Query 003910
Match_columns 787
No_of_seqs 541 out of 3620
Neff 8.0
Searched_HMMs 46136
Date Thu Mar 28 14:12:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003910.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003910hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0339 ATP-dependent RNA heli 100.0 4E-126 8E-131 1001.5 51.0 697 1-727 1-714 (731)
2 KOG0331 ATP-dependent RNA heli 100.0 5.9E-81 1.3E-85 685.5 36.6 426 180-607 16-477 (519)
3 KOG0336 ATP-dependent RNA heli 100.0 2E-79 4.2E-84 632.5 31.9 435 172-609 159-603 (629)
4 KOG0334 RNA helicase [RNA proc 100.0 3.3E-78 7.2E-83 692.3 34.7 435 171-606 310-748 (997)
5 KOG0333 U5 snRNP-like RNA heli 100.0 1.5E-77 3.4E-82 636.7 35.9 491 102-604 128-651 (673)
6 PTZ00110 helicase; Provisional 100.0 1.1E-73 2.3E-78 660.1 50.8 437 170-608 74-514 (545)
7 KOG0341 DEAD-box protein abstr 100.0 2.9E-74 6.2E-79 590.5 22.0 425 178-606 123-557 (610)
8 PLN00206 DEAD-box ATP-dependen 100.0 2.5E-69 5.4E-74 621.9 49.6 483 106-606 8-503 (518)
9 KOG0330 ATP-dependent RNA heli 100.0 1.4E-69 3.1E-74 558.9 33.6 366 223-596 59-425 (476)
10 KOG0335 ATP-dependent RNA heli 100.0 5.1E-68 1.1E-72 573.5 32.6 393 212-606 61-472 (482)
11 KOG0338 ATP-dependent RNA heli 100.0 2E-67 4.4E-72 557.2 28.8 365 224-592 180-547 (691)
12 COG0513 SrmB Superfamily II DN 100.0 6.5E-66 1.4E-70 589.9 41.1 364 225-593 29-396 (513)
13 PRK10590 ATP-dependent RNA hel 100.0 1.1E-62 2.3E-67 560.0 44.7 364 226-592 2-366 (456)
14 KOG0328 Predicted ATP-dependen 100.0 7E-64 1.5E-68 496.3 28.7 377 221-604 23-399 (400)
15 PRK04537 ATP-dependent RNA hel 100.0 4.5E-61 9.8E-66 556.8 46.6 365 225-592 9-378 (572)
16 PRK04837 ATP-dependent RNA hel 100.0 2.1E-60 4.5E-65 537.3 42.6 366 224-592 7-376 (423)
17 KOG0340 ATP-dependent RNA heli 100.0 1.2E-61 2.5E-66 494.9 27.4 394 223-623 5-422 (442)
18 KOG0342 ATP-dependent RNA heli 100.0 6.7E-61 1.4E-65 508.7 30.4 361 224-587 81-446 (543)
19 PRK11776 ATP-dependent RNA hel 100.0 2.2E-58 4.7E-63 526.4 41.8 358 225-591 4-362 (460)
20 PRK11634 ATP-dependent RNA hel 100.0 2E-58 4.3E-63 537.5 42.3 358 224-589 5-363 (629)
21 KOG0345 ATP-dependent RNA heli 100.0 1.6E-58 3.5E-63 486.9 34.8 356 225-583 4-369 (567)
22 PRK11192 ATP-dependent RNA hel 100.0 2.7E-57 5.8E-62 514.1 42.9 363 226-591 2-365 (434)
23 KOG0326 ATP-dependent RNA heli 100.0 8.1E-60 1.7E-64 474.3 18.4 366 225-599 85-450 (459)
24 KOG0343 RNA Helicase [RNA proc 100.0 5.5E-58 1.2E-62 489.3 30.1 371 200-581 49-425 (758)
25 KOG0348 ATP-dependent RNA heli 100.0 7.4E-58 1.6E-62 487.1 29.3 365 223-589 134-565 (708)
26 KOG0346 RNA helicase [RNA proc 100.0 2.8E-57 6.1E-62 473.3 28.7 367 225-592 19-424 (569)
27 PRK01297 ATP-dependent RNA hel 100.0 3.5E-55 7.6E-60 501.5 43.6 379 222-603 84-469 (475)
28 KOG0347 RNA helicase [RNA proc 100.0 1.2E-56 2.5E-61 479.3 21.7 372 220-595 176-587 (731)
29 PTZ00424 helicase 45; Provisio 100.0 4.4E-54 9.5E-59 483.4 39.9 369 224-599 27-395 (401)
30 KOG0344 ATP-dependent RNA heli 100.0 3.5E-55 7.5E-60 475.7 26.5 401 204-606 111-523 (593)
31 KOG0332 ATP-dependent RNA heli 100.0 1.4E-52 3E-57 430.5 29.7 361 222-592 87-458 (477)
32 KOG0337 ATP-dependent RNA heli 100.0 1.2E-53 2.7E-58 444.3 19.2 361 224-590 20-380 (529)
33 KOG0327 Translation initiation 100.0 2E-52 4.3E-57 434.1 23.2 367 224-600 25-392 (397)
34 KOG4284 DEAD box protein [Tran 100.0 4.7E-51 1E-55 441.8 24.1 357 216-580 16-381 (980)
35 TIGR03817 DECH_helic helicase/ 100.0 4.4E-48 9.6E-53 459.1 38.8 344 231-590 20-400 (742)
36 KOG0350 DEAD-box ATP-dependent 100.0 9.7E-49 2.1E-53 415.3 25.1 352 234-592 146-554 (620)
37 PLN03137 ATP-dependent DNA hel 100.0 2.4E-46 5.3E-51 440.6 37.7 344 226-588 436-797 (1195)
38 TIGR00614 recQ_fam ATP-depende 100.0 1.6E-45 3.5E-50 420.4 35.8 327 242-589 6-344 (470)
39 PRK11057 ATP-dependent DNA hel 100.0 1.8E-43 3.9E-48 414.0 37.6 333 232-587 9-352 (607)
40 TIGR00580 mfd transcription-re 100.0 5E-43 1.1E-47 419.5 40.8 401 193-631 390-817 (926)
41 PRK13767 ATP-dependent helicas 100.0 6.5E-43 1.4E-47 422.9 37.9 342 232-576 18-396 (876)
42 PRK02362 ski2-like helicase; P 100.0 4.2E-43 9.1E-48 420.7 35.3 338 226-579 2-398 (737)
43 TIGR02621 cas3_GSU0051 CRISPR- 100.0 5.9E-43 1.3E-47 407.5 32.6 315 243-577 12-390 (844)
44 PRK10689 transcription-repair 100.0 5E-42 1.1E-46 419.1 42.0 402 193-631 539-966 (1147)
45 PRK10917 ATP-dependent DNA hel 100.0 1.2E-41 2.7E-46 402.6 41.2 360 234-630 248-630 (681)
46 TIGR01389 recQ ATP-dependent D 100.0 2.1E-42 4.6E-47 405.8 34.5 326 239-588 4-341 (591)
47 PRK00254 ski2-like helicase; P 100.0 2.7E-42 5.8E-47 412.7 34.3 339 226-579 2-389 (720)
48 TIGR00643 recG ATP-dependent D 100.0 2.7E-41 5.8E-46 397.3 39.9 360 235-630 224-607 (630)
49 KOG0329 ATP-dependent RNA heli 100.0 8.3E-44 1.8E-48 348.6 14.3 333 225-600 42-378 (387)
50 PRK01172 ski2-like helicase; P 100.0 1.6E-40 3.6E-45 395.6 32.9 333 226-578 2-378 (674)
51 PRK09401 reverse gyrase; Revie 100.0 9.9E-39 2.2E-43 391.0 33.8 297 244-564 78-431 (1176)
52 PHA02653 RNA helicase NPH-II; 100.0 2.4E-38 5.3E-43 367.5 29.5 311 250-580 167-516 (675)
53 COG1201 Lhr Lhr-like helicases 100.0 6.7E-38 1.5E-42 363.3 32.2 339 231-577 7-361 (814)
54 PRK09751 putative ATP-dependen 100.0 9.8E-38 2.1E-42 382.8 34.0 303 267-572 1-379 (1490)
55 KOG0349 Putative DEAD-box RNA 100.0 1.9E-38 4E-43 330.4 18.5 279 299-578 287-615 (725)
56 PRK14701 reverse gyrase; Provi 100.0 2.8E-37 6.2E-42 385.2 31.9 328 236-586 68-464 (1638)
57 TIGR01970 DEAH_box_HrpB ATP-de 100.0 3.9E-37 8.4E-42 365.4 30.4 304 252-581 7-339 (819)
58 COG0514 RecQ Superfamily II DN 100.0 8.6E-37 1.9E-41 342.6 30.7 333 238-590 7-349 (590)
59 PRK12898 secA preprotein trans 100.0 1.2E-36 2.5E-41 348.0 29.4 317 246-580 102-588 (656)
60 PRK11664 ATP-dependent RNA hel 100.0 6.8E-37 1.5E-41 364.2 27.5 302 253-580 11-341 (812)
61 COG1111 MPH1 ERCC4-like helica 100.0 7.1E-36 1.5E-40 320.7 32.4 330 244-584 12-489 (542)
62 PHA02558 uvsW UvsW helicase; P 100.0 1.7E-36 3.7E-41 348.1 29.4 306 245-572 112-447 (501)
63 TIGR01587 cas3_core CRISPR-ass 100.0 2E-36 4.3E-41 335.0 28.0 302 264-579 1-337 (358)
64 TIGR01054 rgy reverse gyrase. 100.0 1.9E-35 4.1E-40 362.8 33.0 291 236-549 67-409 (1171)
65 COG1200 RecG RecG-like helicas 100.0 3.5E-34 7.5E-39 320.2 34.7 360 234-630 249-632 (677)
66 PRK09200 preprotein translocas 100.0 6.4E-35 1.4E-39 340.4 29.1 319 244-580 76-543 (790)
67 PRK13766 Hef nuclease; Provisi 100.0 4.5E-34 9.8E-39 346.3 36.5 324 245-579 13-480 (773)
68 COG1202 Superfamily II helicas 100.0 2.2E-35 4.9E-40 317.5 22.0 337 227-578 196-553 (830)
69 TIGR03714 secA2 accessory Sec 100.0 1.9E-34 4.2E-39 333.2 30.4 320 247-581 68-540 (762)
70 COG1204 Superfamily II helicas 100.0 2.4E-34 5.2E-39 338.4 29.1 336 231-578 15-408 (766)
71 TIGR00963 secA preprotein tran 100.0 5.8E-34 1.3E-38 327.2 27.5 318 246-581 55-520 (745)
72 KOG0354 DEAD-box like helicase 100.0 4.7E-33 1E-37 315.5 27.7 322 245-578 60-529 (746)
73 TIGR03158 cas3_cyano CRISPR-as 100.0 2.7E-32 5.8E-37 300.3 29.7 290 251-562 1-357 (357)
74 KOG0384 Chromodomain-helicase 100.0 2.1E-33 4.5E-38 324.6 20.1 397 161-580 290-813 (1373)
75 TIGR00603 rad25 DNA repair hel 100.0 8.9E-32 1.9E-36 311.3 27.6 321 246-594 254-625 (732)
76 PRK11131 ATP-dependent RNA hel 100.0 2.2E-31 4.8E-36 321.7 30.0 302 252-581 79-414 (1294)
77 PRK04914 ATP-dependent helicas 100.0 6.4E-31 1.4E-35 314.1 32.1 320 246-577 151-602 (956)
78 KOG0385 Chromatin remodeling c 100.0 1.3E-31 2.7E-36 297.1 23.8 318 246-579 166-600 (971)
79 COG1205 Distinct helicase fami 100.0 4.2E-30 9.1E-35 306.6 31.7 334 233-576 56-420 (851)
80 KOG0352 ATP-dependent DNA heli 100.0 1.2E-30 2.5E-35 272.5 22.0 335 235-588 6-372 (641)
81 KOG0351 ATP-dependent DNA heli 100.0 3.6E-30 7.8E-35 304.8 29.1 328 241-588 258-602 (941)
82 KOG0952 DNA/RNA helicase MER3/ 100.0 4.1E-30 8.9E-35 293.6 27.0 334 243-584 106-497 (1230)
83 PLN03142 Probable chromatin-re 100.0 3.5E-30 7.5E-35 308.6 27.6 320 246-578 168-599 (1033)
84 COG1197 Mfd Transcription-repa 100.0 3.7E-29 8E-34 294.0 34.4 402 194-631 534-960 (1139)
85 TIGR01967 DEAH_box_HrpA ATP-de 100.0 4.6E-30 9.9E-35 311.5 27.3 303 254-580 74-406 (1283)
86 PRK05580 primosome assembly pr 100.0 1E-28 2.2E-33 291.6 33.0 313 246-581 143-552 (679)
87 cd00268 DEADc DEAD-box helicas 100.0 4.7E-29 1E-33 253.5 25.2 202 227-431 1-202 (203)
88 KOG0387 Transcription-coupled 100.0 1.5E-28 3.3E-33 274.2 24.5 315 246-578 204-658 (923)
89 KOG0353 ATP-dependent DNA heli 100.0 4.6E-28 1E-32 249.3 25.1 335 229-581 75-470 (695)
90 COG1061 SSL2 DNA or RNA helica 100.0 3.5E-28 7.5E-33 274.2 23.6 294 246-564 35-376 (442)
91 PRK09694 helicase Cas3; Provis 100.0 7E-27 1.5E-31 278.0 34.8 312 245-566 284-664 (878)
92 PRK12899 secA preprotein trans 100.0 1.4E-27 3.1E-32 277.3 27.0 180 194-385 32-228 (970)
93 PRK13104 secA preprotein trans 100.0 1.5E-27 3.3E-32 277.8 27.4 316 247-580 82-589 (896)
94 TIGR00595 priA primosomal prot 100.0 1.3E-26 2.8E-31 264.6 28.9 292 266-578 1-381 (505)
95 PRK12904 preprotein translocas 100.0 8.4E-27 1.8E-31 271.6 26.8 317 246-580 80-575 (830)
96 KOG0951 RNA helicase BRR2, DEA 100.0 9E-27 2E-31 268.9 24.6 345 231-583 295-707 (1674)
97 PRK12906 secA preprotein trans 99.9 1.9E-26 4.1E-31 267.7 24.3 317 246-580 79-555 (796)
98 KOG0947 Cytoplasmic exosomal R 99.9 5.1E-26 1.1E-30 257.3 26.4 310 247-578 297-723 (1248)
99 KOG0392 SNF2 family DNA-depend 99.9 1.3E-25 2.8E-30 259.2 23.6 324 247-578 975-1454(1549)
100 KOG1002 Nucleotide excision re 99.9 8.8E-26 1.9E-30 239.5 19.4 361 180-577 141-747 (791)
101 KOG0948 Nuclear exosomal RNA h 99.9 6.4E-26 1.4E-30 250.8 18.0 309 247-578 129-539 (1041)
102 PRK11448 hsdR type I restricti 99.9 2.2E-24 4.8E-29 263.6 29.2 303 246-565 412-801 (1123)
103 KOG0389 SNF2 family DNA-depend 99.9 1.3E-25 2.9E-30 250.5 16.8 322 247-580 399-890 (941)
104 KOG0391 SNF2 family DNA-depend 99.9 1.7E-24 3.7E-29 247.0 25.1 124 456-579 1261-1388(1958)
105 PRK13107 preprotein translocas 99.9 9.9E-25 2.2E-29 253.5 22.8 316 247-580 82-593 (908)
106 KOG0950 DNA polymerase theta/e 99.9 1.6E-24 3.5E-29 247.5 20.5 343 232-588 207-621 (1008)
107 PF00270 DEAD: DEAD/DEAH box h 99.9 4.1E-24 8.9E-29 210.2 20.1 166 249-420 1-169 (169)
108 COG4581 Superfamily II RNA hel 99.9 5.1E-24 1.1E-28 251.1 24.1 309 247-575 119-534 (1041)
109 KOG2340 Uncharacterized conser 99.9 7.7E-24 1.7E-28 227.1 20.2 345 243-588 212-678 (698)
110 COG4098 comFA Superfamily II D 99.9 2E-22 4.3E-27 206.8 29.1 306 246-580 96-418 (441)
111 COG1643 HrpA HrpA-like helicas 99.9 4.4E-23 9.6E-28 242.0 22.9 309 251-580 54-389 (845)
112 KOG0926 DEAH-box RNA helicase 99.9 1.5E-23 3.3E-28 233.3 17.6 308 252-578 261-704 (1172)
113 KOG0390 DNA repair protein, SN 99.9 7.6E-22 1.6E-26 227.0 26.0 325 246-577 237-706 (776)
114 KOG0922 DEAH-box RNA helicase 99.9 2.1E-22 4.7E-27 223.6 19.5 304 251-580 55-392 (674)
115 KOG0923 mRNA splicing factor A 99.9 7.3E-22 1.6E-26 216.6 20.1 310 246-577 264-605 (902)
116 COG1203 CRISPR-associated heli 99.9 4.1E-21 8.8E-26 229.3 23.7 322 248-578 196-550 (733)
117 KOG0924 mRNA splicing factor A 99.9 2.6E-21 5.6E-26 212.4 19.7 312 245-578 354-697 (1042)
118 PF06862 DUF1253: Protein of u 99.9 1.5E-20 3.3E-25 206.4 25.5 292 297-588 36-425 (442)
119 COG1110 Reverse gyrase [DNA re 99.9 8.7E-20 1.9E-24 209.8 31.7 286 238-548 73-416 (1187)
120 KOG0386 Chromatin remodeling c 99.9 5.8E-22 1.3E-26 226.4 13.6 314 246-576 393-836 (1157)
121 KOG0388 SNF2 family DNA-depend 99.9 5.2E-21 1.1E-25 210.3 20.1 148 453-607 1026-1176(1185)
122 TIGR01407 dinG_rel DnaQ family 99.9 1.3E-19 2.9E-24 220.5 32.2 345 232-591 231-829 (850)
123 KOG0920 ATP-dependent RNA heli 99.9 2.9E-20 6.3E-25 217.4 24.8 314 248-578 174-544 (924)
124 TIGR00631 uvrb excinuclease AB 99.9 3.4E-20 7.4E-25 216.9 25.4 133 454-588 425-563 (655)
125 PRK12900 secA preprotein trans 99.8 3E-20 6.5E-25 217.0 21.2 140 452-594 579-731 (1025)
126 PRK05298 excinuclease ABC subu 99.8 8.6E-19 1.9E-23 206.6 29.2 148 454-603 429-591 (652)
127 smart00487 DEXDc DEAD-like hel 99.8 5.2E-19 1.1E-23 177.1 22.2 187 243-435 4-192 (201)
128 KOG1000 Chromatin remodeling p 99.8 1.4E-18 2.9E-23 185.7 25.4 316 245-578 196-602 (689)
129 COG1198 PriA Primosomal protei 99.8 3.5E-18 7.7E-23 198.2 31.0 316 246-583 197-608 (730)
130 TIGR00348 hsdR type I site-spe 99.8 1.7E-18 3.6E-23 204.9 28.2 299 248-564 239-634 (667)
131 PRK12326 preprotein translocas 99.8 1.4E-18 3E-23 198.2 25.6 316 246-580 77-549 (764)
132 COG4096 HsdR Type I site-speci 99.8 7.4E-19 1.6E-23 199.8 19.2 297 246-565 164-526 (875)
133 COG0556 UvrB Helicase subunit 99.8 1.7E-17 3.8E-22 179.5 25.9 165 403-577 386-556 (663)
134 KOG0925 mRNA splicing factor A 99.8 2.2E-18 4.7E-23 183.7 16.6 328 224-578 24-387 (699)
135 PRK13103 secA preprotein trans 99.8 6.6E-18 1.4E-22 197.1 20.9 317 246-581 81-594 (913)
136 PRK07246 bifunctional ATP-depe 99.8 1E-16 2.2E-21 192.9 29.6 324 247-591 245-798 (820)
137 COG4889 Predicted helicase [Ge 99.8 6.6E-18 1.4E-22 189.8 15.3 359 225-595 140-618 (1518)
138 KOG4439 RNA polymerase II tran 99.8 7.8E-18 1.7E-22 186.5 15.4 110 469-578 745-858 (901)
139 KOG1015 Transcription regulato 99.7 3E-17 6.4E-22 185.6 18.9 121 456-576 1127-1275(1567)
140 KOG1123 RNA polymerase II tran 99.7 2.7E-18 5.7E-23 183.4 8.5 311 246-584 301-659 (776)
141 PRK12903 secA preprotein trans 99.7 4.9E-16 1.1E-20 179.7 25.3 315 247-580 78-541 (925)
142 KOG0949 Predicted helicase, DE 99.7 2.1E-16 4.6E-21 180.2 21.2 158 247-414 511-672 (1330)
143 cd00079 HELICc Helicase superf 99.7 1.7E-16 3.6E-21 148.8 12.5 119 455-574 12-131 (131)
144 PRK08074 bifunctional ATP-depe 99.7 5.1E-15 1.1E-19 181.4 28.7 122 469-591 751-908 (928)
145 TIGR03117 cas_csf4 CRISPR-asso 99.7 1.9E-14 4.1E-19 166.3 31.5 107 469-577 469-616 (636)
146 COG0553 HepA Superfamily II DN 99.7 2E-15 4.4E-20 186.4 25.0 325 246-579 337-823 (866)
147 CHL00122 secA preprotein trans 99.7 2.8E-15 6E-20 174.7 21.4 274 247-537 76-491 (870)
148 PF00271 Helicase_C: Helicase 99.7 2.2E-16 4.7E-21 134.7 8.8 78 488-565 1-78 (78)
149 KOG0953 Mitochondrial RNA heli 99.7 1.6E-15 3.4E-20 164.9 16.8 279 261-586 190-484 (700)
150 cd00046 DEXDc DEAD-like helica 99.7 3.5E-15 7.7E-20 140.4 16.9 144 263-413 1-144 (144)
151 PRK12902 secA preprotein trans 99.6 3.6E-14 7.7E-19 165.1 23.3 127 247-385 85-218 (939)
152 KOG4150 Predicted ATP-dependen 99.6 2.5E-14 5.4E-19 155.0 16.9 348 237-595 276-659 (1034)
153 PF04851 ResIII: Type III rest 99.6 1.5E-14 3.3E-19 143.8 12.8 153 247-415 3-184 (184)
154 COG1199 DinG Rad3-related DNA 99.6 4.5E-13 9.7E-18 160.2 25.8 103 470-575 479-615 (654)
155 smart00490 HELICc helicase sup 99.5 6.4E-14 1.4E-18 119.8 8.9 81 485-565 2-82 (82)
156 PRK11747 dinG ATP-dependent DN 99.5 9.1E-12 2E-16 148.4 29.4 117 470-590 534-688 (697)
157 KOG0951 RNA helicase BRR2, DEA 99.5 5.7E-13 1.2E-17 155.9 17.2 313 247-586 1143-1502(1674)
158 TIGR00604 rad3 DNA repair heli 99.5 1.4E-11 3E-16 147.9 28.3 74 244-322 7-84 (705)
159 TIGR02562 cas3_yersinia CRISPR 99.4 5E-12 1.1E-16 149.5 22.1 310 246-565 407-880 (1110)
160 PRK14873 primosome assembly pr 99.4 8.1E-12 1.8E-16 146.4 22.9 273 271-577 169-538 (665)
161 PRK12901 secA preprotein trans 99.4 2.5E-12 5.3E-17 151.3 17.9 126 452-580 609-743 (1112)
162 PF00176 SNF2_N: SNF2 family N 99.3 3.3E-12 7.2E-17 137.4 11.2 156 251-413 1-172 (299)
163 KOG1016 Predicted DNA helicase 99.3 1.1E-11 2.3E-16 138.7 11.9 106 471-576 720-847 (1387)
164 PF02399 Herpes_ori_bp: Origin 99.3 2E-10 4.3E-15 133.1 21.0 288 264-577 51-387 (824)
165 KOG1001 Helicase-like transcri 99.2 6.7E-11 1.4E-15 138.0 10.7 106 471-576 540-647 (674)
166 COG0610 Type I site-specific r 99.1 8.1E-09 1.8E-13 126.6 24.6 313 263-594 274-667 (962)
167 smart00488 DEXDc2 DEAD-like he 99.1 1.7E-09 3.7E-14 115.7 14.6 73 247-321 8-84 (289)
168 smart00489 DEXDc3 DEAD-like he 99.1 1.7E-09 3.7E-14 115.7 14.6 73 247-321 8-84 (289)
169 KOG0921 Dosage compensation co 99.1 6.7E-10 1.5E-14 126.8 11.3 311 255-577 386-773 (1282)
170 PF07652 Flavi_DEAD: Flaviviru 99.1 3.4E-10 7.3E-15 105.6 7.2 135 262-417 4-140 (148)
171 COG0653 SecA Preprotein transl 99.0 9.8E-09 2.1E-13 120.0 16.7 318 247-579 78-546 (822)
172 PF07517 SecA_DEAD: SecA DEAD- 98.8 2.1E-07 4.6E-12 97.4 16.9 134 240-385 70-210 (266)
173 TIGR00596 rad1 DNA repair prot 98.7 3.7E-07 8E-12 109.3 16.1 70 345-414 4-73 (814)
174 KOG0383 Predicted helicase [Ge 98.6 1.9E-09 4.1E-14 124.4 -5.5 78 455-533 615-696 (696)
175 PRK15483 type III restriction- 98.3 8.7E-06 1.9E-10 97.8 15.3 74 520-593 501-583 (986)
176 KOG0952 DNA/RNA helicase MER3/ 98.3 3E-07 6.4E-12 107.8 2.0 256 249-520 929-1205(1230)
177 PF13086 AAA_11: AAA domain; P 98.3 5.8E-06 1.3E-10 85.2 11.2 73 247-320 1-75 (236)
178 COG3587 Restriction endonuclea 98.1 0.0002 4.2E-09 83.4 21.2 73 520-592 483-567 (985)
179 KOG1802 RNA helicase nonsense 98.1 2.9E-05 6.3E-10 87.5 13.5 86 238-334 401-486 (935)
180 PF13604 AAA_30: AAA domain; P 98.1 1.1E-05 2.4E-10 81.5 9.4 124 247-413 1-131 (196)
181 PF12340 DUF3638: Protein of u 98.1 7.1E-05 1.5E-09 76.2 14.6 152 225-386 3-186 (229)
182 PF13872 AAA_34: P-loop contai 98.1 3E-05 6.5E-10 81.7 12.0 168 230-416 26-223 (303)
183 TIGR00376 DNA helicase, putati 98.0 0.00056 1.2E-08 81.2 23.0 68 246-321 156-224 (637)
184 PF13307 Helicase_C_2: Helicas 97.8 2E-05 4.4E-10 77.4 5.5 78 470-549 9-92 (167)
185 PF02562 PhoH: PhoH-like prote 97.8 6.6E-05 1.4E-09 75.7 9.1 146 246-412 3-155 (205)
186 TIGR01447 recD exodeoxyribonuc 97.8 0.00024 5.3E-09 83.2 13.6 143 249-412 147-295 (586)
187 PRK10875 recD exonuclease V su 97.8 0.00022 4.9E-09 83.7 13.2 143 248-412 153-301 (615)
188 PF09848 DUF2075: Uncharacteri 97.7 0.00013 2.8E-09 80.7 10.3 108 264-399 3-117 (352)
189 KOG1803 DNA helicase [Replicat 97.7 9.5E-05 2.1E-09 83.3 8.3 66 246-319 184-250 (649)
190 PRK10536 hypothetical protein; 97.7 0.00076 1.7E-08 70.0 13.7 145 244-411 56-211 (262)
191 TIGR01448 recD_rel helicase, p 97.6 0.00056 1.2E-08 82.4 13.6 127 245-412 321-452 (720)
192 KOG1132 Helicase of the DEAD s 97.6 0.00038 8.3E-09 81.4 10.8 77 472-549 563-656 (945)
193 PF13871 Helicase_C_4: Helicas 97.4 0.00062 1.3E-08 71.6 9.1 84 511-594 52-146 (278)
194 KOG1805 DNA replication helica 97.3 0.0013 2.9E-08 77.7 10.6 138 229-386 655-810 (1100)
195 COG3421 Uncharacterized protei 97.2 0.00084 1.8E-08 75.4 7.7 69 347-416 80-168 (812)
196 TIGR02768 TraA_Ti Ti-type conj 97.1 0.0061 1.3E-07 73.8 15.2 124 246-412 351-476 (744)
197 PRK13889 conjugal transfer rel 97.1 0.0039 8.3E-08 76.8 13.2 124 246-412 345-470 (988)
198 PF13401 AAA_22: AAA domain; P 97.1 0.0023 4.9E-08 59.7 8.4 17 262-278 4-20 (131)
199 PRK08181 transposase; Validate 97.1 0.0053 1.1E-07 65.0 12.0 119 249-416 89-212 (269)
200 KOG1131 RNA polymerase II tran 97.0 0.0062 1.4E-07 67.5 12.4 74 245-322 14-91 (755)
201 PF13245 AAA_19: Part of AAA d 97.0 0.0022 4.8E-08 54.1 7.0 53 262-318 10-62 (76)
202 KOG0298 DEAD box-containing he 96.9 0.0018 3.8E-08 78.6 7.8 155 261-420 373-557 (1394)
203 TIGR02760 TraI_TIGR conjugativ 96.9 0.063 1.4E-06 71.5 22.8 237 247-520 429-686 (1960)
204 PRK04296 thymidine kinase; Pro 96.9 0.002 4.4E-08 64.7 6.8 109 263-412 3-114 (190)
205 PRK14974 cell division protein 96.8 0.011 2.3E-07 64.6 12.1 132 263-425 141-276 (336)
206 smart00492 HELICc3 helicase su 96.8 0.0074 1.6E-07 57.5 9.3 67 483-549 4-79 (141)
207 PRK13826 Dtr system oriT relax 96.7 0.021 4.5E-07 71.0 15.0 137 232-412 367-505 (1102)
208 PRK06526 transposase; Provisio 96.7 0.012 2.5E-07 62.0 11.1 25 255-279 91-115 (254)
209 PRK12723 flagellar biosynthesi 96.7 0.02 4.3E-07 63.8 13.1 132 262-424 174-309 (388)
210 PF00580 UvrD-helicase: UvrD/R 96.7 0.0045 9.8E-08 66.8 8.1 123 248-382 1-125 (315)
211 PF05970 PIF1: PIF1-like helic 96.7 0.0032 7E-08 69.9 6.8 60 247-314 1-66 (364)
212 PRK14722 flhF flagellar biosyn 96.6 0.0097 2.1E-07 65.7 10.2 134 261-426 136-271 (374)
213 COG1875 NYN ribonuclease and A 96.6 0.016 3.5E-07 62.2 11.1 143 244-411 225-386 (436)
214 smart00491 HELICc2 helicase su 96.6 0.0092 2E-07 56.9 8.3 68 482-549 3-80 (142)
215 cd00009 AAA The AAA+ (ATPases 96.5 0.03 6.5E-07 52.3 11.5 25 262-287 19-43 (151)
216 PF14617 CMS1: U3-containing 9 96.4 0.0066 1.4E-07 63.2 6.8 87 296-383 124-212 (252)
217 PRK05703 flhF flagellar biosyn 96.3 0.087 1.9E-06 59.6 15.5 130 262-425 221-355 (424)
218 PF00448 SRP54: SRP54-type pro 96.2 0.034 7.4E-07 56.1 10.5 131 265-424 4-136 (196)
219 COG1419 FlhF Flagellar GTP-bin 96.1 0.089 1.9E-06 58.0 13.7 136 260-427 201-338 (407)
220 PRK11889 flhF flagellar biosyn 96.1 0.076 1.6E-06 58.7 12.8 129 263-425 242-375 (436)
221 PHA02533 17 large terminase pr 96.0 0.03 6.6E-07 65.1 10.4 148 247-413 59-210 (534)
222 PRK06921 hypothetical protein; 96.0 0.075 1.6E-06 56.3 12.5 46 261-314 116-161 (266)
223 smart00382 AAA ATPases associa 96.0 0.023 4.9E-07 52.5 7.6 17 262-278 2-18 (148)
224 PRK07952 DNA replication prote 95.9 0.092 2E-06 54.8 12.4 109 263-418 100-210 (244)
225 PRK08116 hypothetical protein; 95.8 0.17 3.7E-06 53.7 14.2 109 263-418 115-226 (268)
226 TIGR01075 uvrD DNA helicase II 95.8 0.04 8.6E-07 67.0 10.5 109 246-383 3-114 (715)
227 cd01120 RecA-like_NTPases RecA 95.8 0.1 2.2E-06 50.1 11.3 44 370-413 83-136 (165)
228 PRK05642 DNA replication initi 95.8 0.032 7E-07 58.0 8.3 44 371-414 96-140 (234)
229 PF03354 Terminase_1: Phage Te 95.7 0.022 4.8E-07 65.7 7.6 150 250-411 1-161 (477)
230 PRK11773 uvrD DNA-dependent he 95.7 0.045 9.8E-07 66.5 10.4 109 246-383 8-119 (721)
231 PRK06893 DNA replication initi 95.6 0.041 8.9E-07 57.0 8.2 46 371-416 90-137 (229)
232 COG2805 PilT Tfp pilus assembl 95.5 0.021 4.6E-07 59.9 5.3 53 218-290 99-152 (353)
233 KOG1133 Helicase of the DEAD s 95.4 0.37 8.1E-06 55.9 15.4 123 471-606 630-798 (821)
234 PRK08084 DNA replication initi 95.4 0.054 1.2E-06 56.4 8.3 44 373-416 98-144 (235)
235 PRK14723 flhF flagellar biosyn 95.4 0.34 7.4E-06 58.2 15.7 132 262-425 185-318 (767)
236 TIGR01074 rep ATP-dependent DN 95.3 0.092 2E-06 63.4 11.3 108 248-383 2-112 (664)
237 TIGR01547 phage_term_2 phage t 95.3 0.062 1.3E-06 60.5 9.2 145 264-425 3-152 (396)
238 KOG0339 ATP-dependent RNA heli 95.3 1.3 2.8E-05 49.7 18.6 71 470-544 295-376 (731)
239 PRK08727 hypothetical protein; 95.3 0.044 9.5E-07 56.9 7.3 47 371-417 92-140 (233)
240 PRK13709 conjugal transfer nic 95.2 0.17 3.8E-06 65.9 13.6 127 246-412 966-1099(1747)
241 PRK12727 flagellar biosynthesi 95.2 0.71 1.5E-05 53.2 16.9 167 225-425 299-482 (559)
242 PRK14712 conjugal transfer nic 95.2 0.14 3E-06 65.9 12.5 65 246-314 834-900 (1623)
243 PRK11054 helD DNA helicase IV; 95.2 0.061 1.3E-06 64.5 8.8 74 244-323 193-266 (684)
244 PRK06731 flhF flagellar biosyn 95.1 0.35 7.6E-06 51.3 13.4 132 261-425 74-209 (270)
245 PRK07764 DNA polymerase III su 95.1 0.13 2.9E-06 62.7 11.4 42 371-414 119-160 (824)
246 KOG0989 Replication factor C, 95.0 0.16 3.4E-06 53.7 9.9 46 367-413 124-169 (346)
247 TIGR03420 DnaA_homol_Hda DnaA 95.0 0.14 3.1E-06 52.6 9.9 42 373-414 91-133 (226)
248 PRK00149 dnaA chromosomal repl 94.9 0.14 3E-06 58.7 10.7 111 263-420 149-261 (450)
249 cd01124 KaiC KaiC is a circadi 94.9 0.11 2.4E-06 51.5 8.6 48 265-321 2-49 (187)
250 COG1444 Predicted P-loop ATPas 94.8 0.17 3.7E-06 60.2 11.0 148 240-414 207-357 (758)
251 PRK06835 DNA replication prote 94.8 0.2 4.3E-06 54.8 10.9 45 261-314 182-226 (329)
252 PRK12377 putative replication 94.8 0.14 3E-06 53.7 9.3 45 262-315 101-145 (248)
253 TIGR01073 pcrA ATP-dependent D 94.8 0.11 2.4E-06 63.3 9.8 110 246-383 3-114 (726)
254 PRK14087 dnaA chromosomal repl 94.8 0.12 2.6E-06 59.0 9.5 110 263-417 142-253 (450)
255 PF05127 Helicase_RecD: Helica 94.7 0.014 3E-07 57.6 1.5 124 266-414 1-124 (177)
256 TIGR00362 DnaA chromosomal rep 94.7 0.21 4.7E-06 56.4 11.4 48 372-419 199-248 (405)
257 PRK10919 ATP-dependent DNA hel 94.6 0.058 1.3E-06 64.9 6.8 71 247-323 2-72 (672)
258 PHA02544 44 clamp loader, smal 94.5 0.28 6.1E-06 53.3 11.4 39 372-410 100-138 (316)
259 PRK14086 dnaA chromosomal repl 94.5 0.11 2.4E-06 60.8 8.4 50 370-419 375-426 (617)
260 KOG1513 Nuclear helicase MOP-3 94.5 0.058 1.3E-06 62.7 6.0 82 513-594 850-942 (1300)
261 PRK10917 ATP-dependent DNA hel 94.5 0.12 2.5E-06 62.5 8.9 99 446-544 285-389 (681)
262 COG1484 DnaC DNA replication p 94.4 0.15 3.2E-06 53.7 8.4 53 258-319 101-153 (254)
263 KOG0298 DEAD box-containing he 94.4 0.031 6.8E-07 68.3 3.6 100 469-572 1220-1319(1394)
264 TIGR00064 ftsY signal recognit 94.3 0.5 1.1E-05 50.3 12.4 132 263-425 73-214 (272)
265 TIGR02785 addA_Gpos recombinat 94.3 0.18 3.9E-06 64.9 10.6 124 247-383 1-126 (1232)
266 cd00561 CobA_CobO_BtuR ATP:cor 94.3 0.48 1E-05 46.0 10.9 53 370-422 93-147 (159)
267 PRK00771 signal recognition pa 94.2 0.51 1.1E-05 53.5 12.7 131 263-425 96-229 (437)
268 PF05621 TniB: Bacterial TniB 94.2 0.37 8.1E-06 51.3 10.9 54 263-321 62-119 (302)
269 PTZ00112 origin recognition co 94.2 0.52 1.1E-05 56.9 12.9 22 265-287 784-805 (1164)
270 PRK12323 DNA polymerase III su 94.2 0.3 6.6E-06 57.3 10.9 41 370-411 122-162 (700)
271 PRK00411 cdc6 cell division co 94.1 0.34 7.4E-06 54.4 11.2 24 263-287 56-79 (394)
272 PRK05580 primosome assembly pr 94.0 0.2 4.2E-06 60.4 9.4 95 451-546 170-266 (679)
273 PRK12422 chromosomal replicati 93.9 0.3 6.4E-06 55.8 10.3 54 371-424 201-256 (445)
274 PRK06995 flhF flagellar biosyn 93.9 0.34 7.4E-06 55.4 10.6 62 262-330 256-317 (484)
275 PRK05707 DNA polymerase III su 93.9 0.33 7.2E-06 53.1 10.1 42 247-289 3-48 (328)
276 PF00308 Bac_DnaA: Bacterial d 93.8 0.15 3.2E-06 52.5 6.8 107 264-417 36-144 (219)
277 PF13173 AAA_14: AAA domain 93.8 0.53 1.2E-05 43.8 10.1 39 372-413 61-99 (128)
278 PRK07003 DNA polymerase III su 93.7 0.55 1.2E-05 56.1 12.0 52 502-561 242-295 (830)
279 TIGR02760 TraI_TIGR conjugativ 93.7 0.37 7.9E-06 64.5 11.9 62 246-314 1018-1084(1960)
280 PRK14721 flhF flagellar biosyn 93.7 0.58 1.2E-05 52.7 11.7 133 261-425 190-324 (420)
281 PRK12402 replication factor C 93.7 0.4 8.7E-06 52.5 10.5 39 371-410 124-162 (337)
282 PRK09183 transposase/IS protei 93.7 0.26 5.7E-06 52.0 8.6 22 257-278 97-118 (259)
283 PRK08903 DnaA regulatory inact 93.6 0.29 6.4E-06 50.4 8.8 43 372-415 90-133 (227)
284 PRK14949 DNA polymerase III su 93.6 0.51 1.1E-05 57.4 11.6 44 371-416 118-161 (944)
285 PRK08769 DNA polymerase III su 93.5 0.6 1.3E-05 50.8 11.2 45 245-290 2-53 (319)
286 TIGR02881 spore_V_K stage V sp 93.5 0.68 1.5E-05 48.9 11.5 17 263-279 43-59 (261)
287 PRK11331 5-methylcytosine-spec 93.5 0.2 4.3E-06 56.5 7.6 32 248-279 180-211 (459)
288 TIGR00643 recG ATP-dependent D 93.4 0.18 3.8E-06 60.4 7.7 97 448-544 261-363 (630)
289 PRK14088 dnaA chromosomal repl 93.4 0.61 1.3E-05 53.2 11.6 52 372-423 194-247 (440)
290 PRK05986 cob(I)alamin adenolsy 93.4 0.3 6.6E-06 48.7 7.9 146 260-423 20-168 (191)
291 PRK07994 DNA polymerase III su 93.4 1 2.2E-05 53.6 13.6 42 371-414 118-159 (647)
292 PLN03025 replication factor C 93.4 0.75 1.6E-05 50.2 11.9 39 372-412 99-137 (319)
293 PHA03333 putative ATPase subun 93.4 0.96 2.1E-05 53.2 13.0 148 248-413 170-332 (752)
294 TIGR00595 priA primosomal prot 93.3 0.21 4.6E-06 57.9 7.8 93 453-546 7-101 (505)
295 TIGR00708 cobA cob(I)alamin ad 93.2 0.34 7.4E-06 47.6 7.9 53 370-422 95-149 (173)
296 PRK04195 replication factor C 93.2 0.45 9.8E-06 55.1 10.2 17 262-278 39-55 (482)
297 PTZ00293 thymidine kinase; Pro 93.1 0.43 9.3E-06 48.5 8.7 38 262-307 4-41 (211)
298 TIGR01425 SRP54_euk signal rec 93.1 0.96 2.1E-05 51.0 12.3 132 264-425 102-236 (429)
299 PF02572 CobA_CobO_BtuR: ATP:c 93.1 2.3 5E-05 41.8 13.5 139 265-422 6-148 (172)
300 COG2256 MGS1 ATPase related to 93.1 0.41 8.8E-06 52.5 8.9 17 263-279 49-65 (436)
301 PF00004 AAA: ATPase family as 93.1 0.25 5.4E-06 45.6 6.7 17 372-388 58-74 (132)
302 TIGR03015 pepcterm_ATPase puta 93.0 1.4 3E-05 46.5 13.1 32 247-278 23-59 (269)
303 PRK12726 flagellar biosynthesi 93.0 0.94 2E-05 50.1 11.7 132 261-424 205-339 (407)
304 COG1435 Tdk Thymidine kinase [ 93.0 0.72 1.6E-05 45.9 9.7 89 263-383 5-93 (201)
305 PRK08939 primosomal protein Dn 92.8 0.87 1.9E-05 49.3 11.2 25 262-287 156-180 (306)
306 TIGR03499 FlhF flagellar biosy 92.8 0.42 9E-06 51.2 8.7 18 262-279 194-211 (282)
307 cd01122 GP4d_helicase GP4d_hel 92.8 0.33 7.2E-06 51.4 7.9 118 259-387 27-155 (271)
308 TIGR00580 mfd transcription-re 92.7 0.31 6.8E-06 60.4 8.5 99 446-544 475-579 (926)
309 TIGR03689 pup_AAA proteasome A 92.7 0.71 1.5E-05 53.3 10.8 17 262-278 216-232 (512)
310 PRK14964 DNA polymerase III su 92.7 0.67 1.4E-05 53.3 10.5 46 370-417 114-159 (491)
311 PRK14960 DNA polymerase III su 92.7 0.37 8.1E-06 56.7 8.5 42 371-414 117-158 (702)
312 PF05876 Terminase_GpA: Phage 92.6 0.22 4.7E-06 58.5 6.7 127 246-385 15-147 (557)
313 COG1474 CDC6 Cdc6-related prot 92.6 1.2 2.6E-05 49.4 12.2 24 263-287 43-66 (366)
314 PRK14965 DNA polymerase III su 92.6 1.1 2.4E-05 53.0 12.6 46 370-417 117-162 (576)
315 TIGR02928 orc1/cdc6 family rep 92.6 0.82 1.8E-05 50.7 11.1 24 263-287 41-64 (365)
316 PRK13342 recombination factor 92.6 0.79 1.7E-05 51.9 11.0 16 263-278 37-52 (413)
317 PRK09111 DNA polymerase III su 92.6 0.63 1.4E-05 55.0 10.4 40 370-410 130-169 (598)
318 KOG0739 AAA+-type ATPase [Post 92.5 1.7 3.7E-05 45.8 12.1 122 256-428 155-293 (439)
319 PRK13833 conjugal transfer pro 92.4 0.39 8.5E-06 52.2 7.8 58 248-311 129-187 (323)
320 PRK06645 DNA polymerase III su 92.4 0.85 1.8E-05 52.8 10.9 17 264-280 45-61 (507)
321 COG0593 DnaA ATPase involved i 92.1 0.65 1.4E-05 51.8 9.1 49 372-420 175-225 (408)
322 PRK14961 DNA polymerase III su 92.0 1.6 3.5E-05 48.5 12.4 40 371-412 118-157 (363)
323 PRK13894 conjugal transfer ATP 91.9 0.43 9.3E-06 52.0 7.5 66 238-311 125-191 (319)
324 COG0470 HolB ATPase involved i 91.9 2 4.4E-05 46.4 12.9 27 263-290 24-51 (325)
325 COG4962 CpaF Flp pilus assembl 91.9 0.26 5.7E-06 53.1 5.5 60 244-312 154-214 (355)
326 COG3973 Superfamily I DNA and 91.8 1.3 2.7E-05 51.1 11.1 88 231-321 188-283 (747)
327 PRK09112 DNA polymerase III su 91.8 1 2.2E-05 49.8 10.3 40 370-410 139-178 (351)
328 PRK13341 recombination factor 91.8 1.1 2.3E-05 54.3 11.2 46 372-422 109-154 (725)
329 PF13177 DNA_pol3_delta2: DNA 91.7 1 2.2E-05 44.0 9.2 42 371-413 101-142 (162)
330 PHA03368 DNA packaging termina 91.7 0.87 1.9E-05 53.4 9.9 136 260-415 252-392 (738)
331 PRK14956 DNA polymerase III su 91.7 0.9 1.9E-05 51.9 9.9 16 265-280 43-58 (484)
332 PRK14952 DNA polymerase III su 91.7 1.2 2.7E-05 52.3 11.3 45 370-416 116-160 (584)
333 PRK10867 signal recognition pa 91.7 2.1 4.6E-05 48.5 12.8 59 264-330 102-160 (433)
334 PRK12724 flagellar biosynthesi 91.6 2.3 5E-05 47.8 12.8 126 263-424 224-356 (432)
335 PRK08691 DNA polymerase III su 91.6 1.8 3.9E-05 51.5 12.5 40 370-410 117-156 (709)
336 COG2109 BtuR ATP:corrinoid ade 91.6 1.5 3.2E-05 43.4 9.9 54 371-424 121-176 (198)
337 PRK08533 flagellar accessory p 91.6 1.4 2.9E-05 45.8 10.5 52 261-321 23-74 (230)
338 COG4626 Phage terminase-like p 91.6 1.3 2.7E-05 50.9 10.8 148 246-412 60-224 (546)
339 PF06733 DEAD_2: DEAD_2; Inte 91.5 0.12 2.7E-06 50.9 2.5 46 341-386 112-159 (174)
340 KOG2028 ATPase related to the 91.4 0.79 1.7E-05 49.5 8.4 15 264-278 164-178 (554)
341 TIGR02524 dot_icm_DotB Dot/Icm 91.4 0.47 1E-05 52.5 7.2 50 220-288 110-159 (358)
342 PRK14958 DNA polymerase III su 91.4 1.3 2.8E-05 51.5 11.1 39 371-410 118-156 (509)
343 TIGR03881 KaiC_arch_4 KaiC dom 91.4 1.6 3.5E-05 44.9 10.8 52 261-321 19-70 (229)
344 cd00984 DnaB_C DnaB helicase C 91.3 0.59 1.3E-05 48.5 7.5 111 261-386 12-137 (242)
345 COG1200 RecG RecG-like helicas 91.3 0.43 9.4E-06 55.7 6.9 90 457-546 298-392 (677)
346 TIGR03877 thermo_KaiC_1 KaiC d 91.2 0.62 1.3E-05 48.5 7.6 52 261-321 20-71 (237)
347 TIGR02525 plasmid_TraJ plasmid 91.1 0.57 1.2E-05 52.0 7.5 50 221-289 126-175 (372)
348 CHL00181 cbbX CbbX; Provisiona 91.1 2.6 5.6E-05 45.2 12.4 18 262-279 59-76 (287)
349 KOG0741 AAA+-type ATPase [Post 91.1 1.9 4E-05 49.0 11.2 56 220-278 211-272 (744)
350 PRK14873 primosome assembly pr 91.1 0.66 1.4E-05 55.5 8.4 92 454-546 171-265 (665)
351 cd03115 SRP The signal recogni 91.0 3.2 7E-05 40.6 12.1 55 371-425 81-136 (173)
352 PRK05563 DNA polymerase III su 90.9 2 4.3E-05 50.6 12.1 46 370-417 117-162 (559)
353 KOG0738 AAA+-type ATPase [Post 90.9 1.5 3.4E-05 47.9 10.0 56 372-427 304-375 (491)
354 PRK14959 DNA polymerase III su 90.8 0.8 1.7E-05 54.0 8.6 46 371-418 118-163 (624)
355 PRK14951 DNA polymerase III su 90.8 1.3 2.8E-05 52.4 10.4 44 371-416 123-166 (618)
356 PRK10689 transcription-repair 90.7 0.74 1.6E-05 58.5 8.8 99 446-544 624-728 (1147)
357 COG3972 Superfamily I DNA and 90.7 1.1 2.4E-05 50.2 8.9 140 236-383 152-306 (660)
358 KOG0058 Peptide exporter, ABC 90.6 0.62 1.3E-05 54.8 7.4 140 260-411 492-660 (716)
359 TIGR00959 ffh signal recogniti 90.6 2.9 6.3E-05 47.4 12.6 60 264-331 101-160 (428)
360 PF06745 KaiC: KaiC; InterPro 90.6 0.71 1.5E-05 47.5 7.3 134 261-413 18-160 (226)
361 PRK14950 DNA polymerase III su 90.6 4.5 9.8E-05 48.0 14.9 41 370-412 118-158 (585)
362 KOG0701 dsRNA-specific nucleas 90.4 0.18 3.8E-06 64.4 3.0 93 473-565 295-399 (1606)
363 PHA00729 NTP-binding motif con 90.4 2.2 4.8E-05 43.9 10.4 74 350-423 60-138 (226)
364 PRK14955 DNA polymerase III su 90.4 2.3 4.9E-05 48.0 11.6 24 264-288 40-63 (397)
365 PF03796 DnaB_C: DnaB-like hel 90.3 2.6 5.5E-05 44.4 11.3 115 263-387 20-145 (259)
366 PF03969 AFG1_ATPase: AFG1-lik 90.1 5.4 0.00012 44.3 14.0 110 262-417 62-172 (362)
367 PRK00440 rfc replication facto 90.1 3.6 7.8E-05 44.5 12.7 38 372-410 102-139 (319)
368 TIGR02782 TrbB_P P-type conjug 90.1 1.2 2.6E-05 48.1 8.6 58 248-311 117-175 (299)
369 TIGR02880 cbbX_cfxQ probable R 90.0 2.2 4.7E-05 45.7 10.6 18 262-279 58-75 (284)
370 PRK07940 DNA polymerase III su 89.9 1.6 3.4E-05 49.1 9.7 45 371-417 116-160 (394)
371 PRK14957 DNA polymerase III su 89.9 4.6 0.0001 47.2 13.7 39 371-410 118-156 (546)
372 PF05729 NACHT: NACHT domain 89.8 2 4.3E-05 41.1 9.4 38 375-412 84-129 (166)
373 PRK11034 clpA ATP-dependent Cl 89.8 3.2 6.8E-05 50.6 12.8 44 374-417 280-327 (758)
374 KOG0742 AAA+-type ATPase [Post 89.7 0.75 1.6E-05 50.4 6.5 16 263-278 385-400 (630)
375 COG2909 MalT ATP-dependent tra 89.7 1.2 2.6E-05 53.4 8.7 43 372-414 129-171 (894)
376 PRK10416 signal recognition pa 89.6 5.4 0.00012 43.5 13.3 134 262-425 114-256 (318)
377 PHA03372 DNA packaging termina 89.5 7.4 0.00016 45.4 14.5 128 262-413 202-337 (668)
378 PRK14962 DNA polymerase III su 89.4 3.1 6.7E-05 47.9 11.8 16 264-279 38-53 (472)
379 TIGR03346 chaperone_ClpB ATP-d 89.4 4.2 9.1E-05 50.6 13.8 17 263-279 195-211 (852)
380 TIGR02639 ClpA ATP-dependent C 89.3 5.2 0.00011 48.9 14.3 16 263-278 204-219 (731)
381 PRK07414 cob(I)yrinic acid a,c 89.2 5.4 0.00012 39.4 11.7 53 370-422 113-167 (178)
382 PRK11823 DNA repair protein Ra 89.2 1.3 2.8E-05 50.7 8.5 51 262-321 80-130 (446)
383 PRK14969 DNA polymerase III su 89.1 3 6.5E-05 48.7 11.6 40 370-410 117-156 (527)
384 COG0513 SrmB Superfamily II DN 89.1 1.2 2.6E-05 52.0 8.3 68 473-544 102-180 (513)
385 PF03237 Terminase_6: Terminas 89.1 3.8 8.2E-05 44.9 12.1 146 266-428 1-154 (384)
386 PRK13900 type IV secretion sys 89.1 1.1 2.4E-05 49.0 7.6 44 259-311 157-200 (332)
387 PHA00012 I assembly protein 89.0 6.1 0.00013 42.7 12.6 57 371-427 80-141 (361)
388 PRK13851 type IV secretion sys 89.0 0.59 1.3E-05 51.4 5.4 45 258-311 158-202 (344)
389 KOG0733 Nuclear AAA ATPase (VC 89.0 1.9 4.1E-05 49.8 9.3 54 222-278 505-561 (802)
390 PRK04841 transcriptional regul 89.0 3.1 6.7E-05 52.1 12.5 44 371-414 120-163 (903)
391 PRK14963 DNA polymerase III su 88.8 2.7 5.8E-05 48.8 10.8 23 265-288 39-61 (504)
392 PRK06871 DNA polymerase III su 88.7 2.8 6E-05 45.8 10.2 40 371-411 106-145 (325)
393 PRK14948 DNA polymerase III su 88.6 2.5 5.5E-05 50.3 10.6 25 263-288 39-63 (620)
394 COG1198 PriA Primosomal protei 88.5 0.74 1.6E-05 55.2 6.1 92 452-544 226-319 (730)
395 PRK14954 DNA polymerase III su 88.5 3.1 6.7E-05 49.5 11.2 40 370-410 125-164 (620)
396 PRK05973 replicative DNA helic 88.5 3.4 7.4E-05 42.9 10.3 66 246-321 49-114 (237)
397 PRK07471 DNA polymerase III su 88.5 3.7 7.9E-05 45.7 11.2 135 264-413 43-181 (365)
398 PRK06964 DNA polymerase III su 88.3 3 6.5E-05 45.8 10.2 40 249-289 3-47 (342)
399 COG0552 FtsY Signal recognitio 88.2 9.5 0.00021 41.3 13.5 130 264-424 141-280 (340)
400 cd03239 ABC_SMC_head The struc 88.2 0.56 1.2E-05 46.6 4.2 43 370-412 114-157 (178)
401 KOG2543 Origin recognition com 88.2 6.9 0.00015 43.0 12.5 142 248-416 10-161 (438)
402 KOG1133 Helicase of the DEAD s 88.1 0.68 1.5E-05 53.8 5.2 43 246-288 14-60 (821)
403 TIGR03600 phage_DnaB phage rep 88.1 5.1 0.00011 45.5 12.5 115 261-385 193-318 (421)
404 PRK08699 DNA polymerase III su 88.1 4.9 0.00011 43.9 11.8 39 249-288 3-46 (325)
405 PRK06067 flagellar accessory p 88.1 11 0.00023 38.9 13.9 51 262-321 25-75 (234)
406 cd01121 Sms Sms (bacterial rad 88.0 1.9 4.2E-05 48.0 8.7 51 262-321 82-132 (372)
407 KOG0991 Replication factor C, 88.0 1.2 2.6E-05 45.4 6.2 41 371-412 112-152 (333)
408 PF05707 Zot: Zonular occluden 87.9 0.88 1.9E-05 45.7 5.5 53 372-424 79-136 (193)
409 COG1110 Reverse gyrase [DNA re 87.9 1 2.2E-05 54.8 6.6 62 469-530 124-191 (1187)
410 COG3267 ExeA Type II secretory 87.9 3.1 6.6E-05 43.3 9.2 23 258-280 46-69 (269)
411 PRK10865 protein disaggregatio 87.8 5.9 0.00013 49.2 13.5 16 263-278 200-215 (857)
412 PF02534 T4SS-DNA_transf: Type 87.8 0.54 1.2E-05 54.2 4.4 57 263-333 45-101 (469)
413 cd01126 TraG_VirD4 The TraG/Tr 87.7 0.39 8.4E-06 53.8 3.0 56 264-333 1-56 (384)
414 cd01128 rho_factor Transcripti 87.4 1.4 3.1E-05 46.2 6.8 20 259-278 13-32 (249)
415 PRK06904 replicative DNA helic 87.4 7.7 0.00017 44.7 13.4 117 261-387 220-349 (472)
416 PF01695 IstB_IS21: IstB-like 87.4 0.93 2E-05 45.0 5.2 51 255-314 40-90 (178)
417 PRK13764 ATPase; Provisional 87.3 1.2 2.7E-05 52.3 6.9 27 261-288 256-282 (602)
418 PTZ00454 26S protease regulato 86.9 2.3 5.1E-05 47.8 8.6 54 222-278 139-195 (398)
419 PF05496 RuvB_N: Holliday junc 86.9 1.8 4E-05 44.3 7.0 15 264-278 52-66 (233)
420 TIGR01420 pilT_fam pilus retra 86.9 1.7 3.8E-05 47.8 7.5 43 261-310 121-163 (343)
421 KOG0741 AAA+-type ATPase [Post 86.6 7.8 0.00017 44.2 12.0 138 230-417 494-653 (744)
422 KOG0745 Putative ATP-dependent 86.4 1 2.3E-05 49.8 5.2 27 261-289 225-251 (564)
423 PF01443 Viral_helicase1: Vira 86.4 0.57 1.2E-05 48.2 3.2 14 265-278 1-14 (234)
424 PRK07993 DNA polymerase III su 86.3 5.9 0.00013 43.5 11.2 41 248-289 3-50 (334)
425 TIGR00614 recQ_fam ATP-depende 86.3 2.9 6.3E-05 48.2 9.2 94 448-544 31-133 (470)
426 CHL00095 clpC Clp protease ATP 86.2 4.4 9.5E-05 50.2 11.2 17 263-279 201-217 (821)
427 TIGR01243 CDC48 AAA family ATP 86.1 4.5 9.9E-05 49.4 11.3 53 223-278 173-228 (733)
428 PRK05896 DNA polymerase III su 86.0 2.9 6.3E-05 49.1 9.0 25 263-288 39-63 (605)
429 COG1485 Predicted ATPase [Gene 86.0 14 0.00031 40.3 13.4 117 255-417 53-175 (367)
430 PRK08451 DNA polymerase III su 85.9 3.4 7.4E-05 48.1 9.4 40 370-410 115-154 (535)
431 KOG0740 AAA+-type ATPase [Post 85.7 3.8 8.1E-05 46.0 9.2 55 371-425 244-311 (428)
432 TIGR01243 CDC48 AAA family ATP 85.7 2.8 6E-05 51.3 9.1 16 263-278 488-503 (733)
433 cd00268 DEADc DEAD-box helicas 85.6 4.4 9.5E-05 40.6 9.2 71 470-544 69-149 (203)
434 TIGR00635 ruvB Holliday juncti 85.5 1.5 3.4E-05 47.2 6.2 16 263-278 31-46 (305)
435 COG1197 Mfd Transcription-repa 85.4 2.4 5.2E-05 52.7 8.2 92 453-544 625-722 (1139)
436 COG2804 PulE Type II secretory 85.4 1.4 3E-05 50.1 5.7 40 249-289 243-284 (500)
437 PRK13897 type IV secretion sys 85.4 0.85 1.8E-05 53.9 4.3 57 263-333 159-215 (606)
438 TIGR01241 FtsH_fam ATP-depende 85.3 5.1 0.00011 46.6 10.7 54 222-278 49-104 (495)
439 TIGR03345 VI_ClpV1 type VI sec 85.3 9.3 0.0002 47.4 13.3 16 263-278 209-224 (852)
440 PRK06647 DNA polymerase III su 85.2 3.8 8.2E-05 48.2 9.5 43 370-414 117-159 (563)
441 PRK04328 hypothetical protein; 85.1 4.5 9.8E-05 42.4 9.2 52 261-321 22-73 (249)
442 TIGR00767 rho transcription te 85.1 4.9 0.00011 44.9 9.7 19 260-278 166-184 (415)
443 PRK07399 DNA polymerase III su 85.0 5.3 0.00012 43.4 10.0 51 358-411 111-161 (314)
444 TIGR03878 thermo_KaiC_2 KaiC d 85.0 4.9 0.00011 42.4 9.5 37 261-305 35-71 (259)
445 PRK06090 DNA polymerase III su 85.0 4.6 9.9E-05 44.0 9.4 42 247-289 3-51 (319)
446 TIGR00665 DnaB replicative DNA 84.9 7.6 0.00016 44.3 11.7 112 262-385 195-318 (434)
447 PRK10436 hypothetical protein; 84.8 1.4 3.1E-05 50.4 5.6 35 252-287 206-242 (462)
448 TIGR00678 holB DNA polymerase 84.7 7.3 0.00016 38.7 10.2 41 370-412 94-134 (188)
449 PRK04537 ATP-dependent RNA hel 84.6 4.6 0.0001 47.8 10.0 72 297-378 256-331 (572)
450 PRK11634 ATP-dependent RNA hel 84.6 2.6 5.5E-05 50.5 7.9 71 470-544 74-155 (629)
451 PRK06620 hypothetical protein; 84.2 5.3 0.00012 40.9 9.0 105 301-416 17-126 (214)
452 KOG3973 Uncharacterized conser 84.1 0.93 2E-05 48.0 3.4 28 618-645 429-456 (465)
453 PRK08506 replicative DNA helic 84.1 7.5 0.00016 44.8 11.2 113 262-385 192-315 (472)
454 PRK03992 proteasome-activating 84.1 3.9 8.6E-05 45.9 8.7 16 263-278 166-181 (389)
455 COG1132 MdlB ABC-type multidru 83.8 2 4.3E-05 50.8 6.6 44 370-413 481-524 (567)
456 PRK05748 replicative DNA helic 83.8 6.7 0.00015 44.9 10.6 114 262-385 203-327 (448)
457 PRK08840 replicative DNA helic 83.5 12 0.00025 43.1 12.3 115 261-385 216-342 (464)
458 PRK08760 replicative DNA helic 83.4 8.2 0.00018 44.6 11.1 113 262-385 229-352 (476)
459 PRK07004 replicative DNA helic 83.4 7.6 0.00017 44.6 10.8 116 261-386 212-338 (460)
460 PRK07413 hypothetical protein; 83.3 6.5 0.00014 43.6 9.7 54 370-423 123-178 (382)
461 PF01637 Arch_ATPase: Archaeal 83.3 4.7 0.0001 40.9 8.4 17 262-278 20-36 (234)
462 PHA00350 putative assembly pro 83.2 8.5 0.00019 43.1 10.7 23 265-287 4-27 (399)
463 COG0210 UvrD Superfamily I DNA 82.9 2.6 5.6E-05 50.8 7.1 71 247-323 2-72 (655)
464 cd01129 PulE-GspE PulE/GspE Th 82.9 3.2 7E-05 43.9 7.0 36 251-287 67-104 (264)
465 TIGR02858 spore_III_AA stage I 82.9 6.5 0.00014 41.7 9.3 23 256-278 102-127 (270)
466 COG3598 RepA RecA-family ATPas 82.7 8.8 0.00019 41.2 9.8 149 251-413 77-242 (402)
467 PRK09376 rho transcription ter 82.7 3.6 7.8E-05 45.8 7.4 26 261-287 168-193 (416)
468 TIGR03880 KaiC_arch_3 KaiC dom 82.4 8.6 0.00019 39.4 9.9 51 262-321 16-66 (224)
469 COG0630 VirB11 Type IV secreto 82.4 2.4 5.2E-05 46.0 5.9 58 245-311 125-183 (312)
470 PF12846 AAA_10: AAA-like doma 82.3 3.7 8E-05 43.7 7.4 42 263-312 2-43 (304)
471 TIGR01389 recQ ATP-dependent D 82.3 4.7 0.0001 48.0 8.9 79 447-528 32-111 (591)
472 TIGR03819 heli_sec_ATPase heli 82.2 3.1 6.7E-05 45.8 6.7 64 237-311 154-218 (340)
473 cd03221 ABCF_EF-3 ABCF_EF-3 E 81.9 8 0.00017 36.7 8.7 40 370-412 86-125 (144)
474 PRK11776 ATP-dependent RNA hel 81.8 4 8.7E-05 46.9 7.9 70 471-544 73-153 (460)
475 TIGR02538 type_IV_pilB type IV 81.8 2.1 4.5E-05 50.6 5.6 38 249-287 301-340 (564)
476 PRK08006 replicative DNA helic 81.7 18 0.00038 41.8 12.9 114 262-385 224-349 (471)
477 cd01130 VirB11-like_ATPase Typ 81.7 3.3 7.1E-05 41.3 6.2 33 246-278 8-41 (186)
478 TIGR02012 tigrfam_recA protein 81.6 2.6 5.7E-05 45.8 5.8 43 261-311 54-96 (321)
479 TIGR02868 CydC thiol reductant 81.6 2.4 5.3E-05 49.6 6.1 41 370-410 486-526 (529)
480 TIGR00631 uvrb excinuclease AB 81.6 18 0.0004 43.4 13.4 117 296-422 440-562 (655)
481 TIGR00763 lon ATP-dependent pr 81.5 15 0.00033 45.2 13.1 17 262-278 347-363 (775)
482 PRK05636 replicative DNA helic 81.5 13 0.00028 43.3 11.7 112 263-385 266-388 (505)
483 KOG1832 HIV-1 Vpr-binding prot 81.5 0.91 2E-05 53.8 2.3 11 29-39 1393-1403(1516)
484 PRK06305 DNA polymerase III su 81.4 11 0.00025 43.1 11.2 37 371-408 120-156 (451)
485 PRK14971 DNA polymerase III su 81.2 18 0.00038 43.2 13.1 45 370-416 119-163 (614)
486 PRK14701 reverse gyrase; Provi 81.2 3.8 8.2E-05 54.0 8.0 59 470-528 122-186 (1638)
487 KOG0737 AAA+-type ATPase [Post 81.2 9.3 0.0002 41.8 9.6 54 225-278 89-143 (386)
488 CHL00176 ftsH cell division pr 81.2 8.7 0.00019 45.9 10.5 16 263-278 217-232 (638)
489 KOG0331 ATP-dependent RNA heli 81.1 6.1 0.00013 45.4 8.7 89 272-377 322-414 (519)
490 PRK07133 DNA polymerase III su 81.0 5.2 0.00011 48.1 8.4 44 370-415 116-159 (725)
491 PRK06321 replicative DNA helic 80.8 12 0.00025 43.2 11.1 112 263-385 227-349 (472)
492 PRK13850 type IV secretion sys 80.7 1.7 3.7E-05 52.1 4.3 56 263-332 140-195 (670)
493 PF10593 Z1: Z1 domain; Inter 80.7 5.3 0.00011 41.6 7.5 102 494-605 110-216 (239)
494 PRK07413 hypothetical protein; 80.4 7.6 0.00017 43.1 8.9 53 371-423 304-359 (382)
495 COG4555 NatA ABC-type Na+ tran 80.3 7.1 0.00015 39.3 7.7 54 370-423 149-202 (245)
496 COG2255 RuvB Holliday junction 80.3 8.3 0.00018 40.8 8.6 16 263-278 53-68 (332)
497 KOG0333 U5 snRNP-like RNA heli 80.0 6.9 0.00015 44.5 8.3 70 298-377 517-590 (673)
498 PRK11192 ATP-dependent RNA hel 80.0 8.2 0.00018 44.0 9.5 70 298-377 245-318 (434)
499 COG0378 HypB Ni2+-binding GTPa 79.9 41 0.00088 33.8 12.8 53 373-425 144-197 (202)
500 TIGR02237 recomb_radB DNA repa 79.8 6 0.00013 40.0 7.5 38 261-306 11-48 (209)
No 1
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.6e-126 Score=1001.46 Aligned_cols=697 Identities=60% Similarity=0.921 Sum_probs=626.6
Q ss_pred CCCccccccccccccccccccccccCCcccccCCCCCCCCCCCCCCCccCcc----cccchhhhhcCCCCCCCCCccCCc
Q 003910 1 MTKRKFGFEGFNINRQTSYSFEQSQAPQRLYVPPSSRYSHDNYEDTDLDNID----YEDNDAAKAANDTGNGAEKEEIDP 76 (787)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~k~~~~~~d~~~~~----~~ddde~~~~~~~~~~~~eee~d~ 76 (787)
|+.|+|||+||+.+++.+|+|+++++|+++|+|+|++++- +-++.+-+.++ +||||.....+......+.+|+||
T Consensus 1 l~~r~~g~~g~~rn~~ts~~~e~s~~~~~~y~~~s~yg~~-~~~~~~rk~i~ddey~eddd~p~~~s~~~a~~~~de~d~ 79 (731)
T KOG0339|consen 1 LSNRKFGMEGFGRNRQTSYSFERSQAPQRLYVPPSSYGGD-NSEDADRKNIDDDEYEEDDDIPEGGSAAAAGGEVDEIDP 79 (731)
T ss_pred CCccCCCCCCCCcCcccccchhhhcCccceecChhhcCCC-chhhhhhhcccccccccccccccccchhhccCCCCCCCC
Confidence 7899999999999999999999999999999999998874 22222222222 222232223333445567788999
Q ss_pred hhHHhhhhHHHhhcCCCCCCcccccccC------------CCCCCChhHHHHHhhhhcCchhhhhhhccCCCChHHHHHH
Q 003910 77 LDAFMEGIHEEMRAAPPPKPKEKLERYK------------DDDEEDPMESFLMAKKDVGLTLAADALRAGYDSDEEVYAA 144 (787)
Q Consensus 77 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~e~d~~e~~~~~~~~~~~~~~~~~~~~g~~~~ee~~~~ 144 (787)
+|+||+.+++++++.+++..+++.+..+ |.++++..|.+++|+.+. ..+ ..
T Consensus 80 ldafMA~~~d~~~sd~~~~e~kk~eRkn~dd~~p~~~vr~dI~~e~aae~~~kym~e~--------k~~---------~~ 142 (731)
T KOG0339|consen 80 LDAFMAKIEDQAQSDKKPLEQKKKERKNDDDDDPTATVRADIDEEDAAEALFKYMSEN--------KRA---------GA 142 (731)
T ss_pred cchhhhhhhhhhhccCCccchHHHhhhccCCCccchhhhcchhhHHhHHHHHHHhhhc--------ccc---------hh
Confidence 9999999999998877555444333333 233445556666665332 112 22
Q ss_pred HhhhhcCCCCCCCCCChhhhhhhccCCCCCCCCCccccCccccccccCCccccCCCHHHHHHHHHHcCceeccCCCCCcc
Q 003910 145 AKAVDAGMLDYDSDDNPVVVEKKKIEPIPALDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPV 224 (787)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~k~fy~~~~~i~~~s~~~~~~~~~~~~i~v~g~~~P~pi 224 (787)
+++.+...++|+++++++...|+.++|+++++|+.|+|+||+++||.+|+.|..|+..++..++..+++++.|...|+|+
T Consensus 143 ~~e~~~~~leydsd~nPi~~~kr~idpl~~idhs~i~y~p~~kdfy~e~esI~gl~~~d~~~~r~~Lnlrv~g~s~~rpv 222 (731)
T KOG0339|consen 143 AKECDDMCLEYDSDGNPIAPDKRQIDPLPPIDHSEIDYEPFNKDFYEEHESIEGLTKMDVIDLRLTLNLRVSGSSPPRPV 222 (731)
T ss_pred hhhcccceeecCCCCCccCcccccCCCCCCcchhhccccccccccccChhhhhccccccchhhHhhhcceeccCCCCCCc
Confidence 34556678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEE
Q 003910 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC 304 (787)
Q Consensus 225 ~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl 304 (787)
++|++++|+..|+.++.+..|++|||+|+++||..++|+|+|.+|.||||||.+|++|++.|+++++.+...++|+.|||
T Consensus 223 tsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vil 302 (731)
T KOG0339|consen 223 TSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVIL 302 (731)
T ss_pred chhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhh
Q 003910 305 APTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRM 384 (787)
Q Consensus 305 ~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m 384 (787)
||||+||.||+.++++|++.++++++++|||.+.++|+..|+.++.||||||+||++++..+.++|.+++|||||||++|
T Consensus 303 vPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrm 382 (731)
T KOG0339|consen 303 VPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRM 382 (731)
T ss_pred eccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCChHHHHHHhhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcchHHHHHHhc
Q 003910 385 FDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKL 464 (787)
Q Consensus 385 ~~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L 464 (787)
+++||+++++.|..+++|++|+|+||||++..++.+++.+|.+|+.+..+.++..+.+|+|.+.++++...|+.||+..|
T Consensus 383 fdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L 462 (731)
T KOG0339|consen 383 FDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHL 462 (731)
T ss_pred hccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEEE
Q 003910 465 PGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN 544 (787)
Q Consensus 465 ~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~ 544 (787)
......|++|||+..+..++.|+..|+..++.|..+||+|+|.+|.++|..|+.+.+.|||+|++++|||||+.+.+|||
T Consensus 463 ~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvn 542 (731)
T KOG0339|consen 463 VEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVN 542 (731)
T ss_pred hhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHhhccCCCCCCCcEEEEEEccccHHHHHHHHHHHHHcCCCccHHHHHHHHhcCcccccccccCCCCCC
Q 003910 545 FDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLAMKDGRFRSKRDARKGGGKK 624 (787)
Q Consensus 545 ~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~l~~~~~~vp~~l~~~a~~~~~~~~~~~~r~~g~~~ 624 (787)
||+..+++.|+|||||+||+|. .|++|+|+++.|..++..|++.|+.++|.||++|++|+++.+|||.+|.++++|+++
T Consensus 543 yD~ardIdththrigrtgRag~-kGvayTlvTeKDa~fAG~LVnnLe~agQnVP~~l~dlamk~s~fr~~r~~~g~gk~~ 621 (731)
T KOG0339|consen 543 YDFARDIDTHTHRIGRTGRAGE-KGVAYTLVTEKDAEFAGHLVNNLEGAGQNVPDELMDLAMKSSWFRSSRFGRGGGKKG 621 (731)
T ss_pred ccccchhHHHHHHhhhcccccc-cceeeEEechhhHHHhhHHHHHHhhccccCChHHHHHHhhhhhhhhhhccCCCCCCC
Confidence 9999999999999999999995 599999999999999999999999999999999999999999999999888777654
Q ss_pred CCCCCCCCCCCCCcccCCCCCCCCCCCCCCCC-CCCCcchhhhhHHHHHHHhhhccccccCCCCCCCCCCCCcCccCCCC
Q 003910 625 GKGRGGAGRGVRGVDFGLGIGYTPESNNTSSQ-SVPSRSAAVNSLKTGMMTQFRSNFVAASSNTPSEGFNNSASAYANKR 703 (787)
Q Consensus 625 g~g~gggg~g~rg~~~g~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (787)
.+ +|||.|.|+.+ |+|+++.+++++++++ ..|++|....+|++||++||+++||||+.|+++.. +++++|
T Consensus 622 ~~--~~gglgyr~~~-g~g~~~~g~~~~t~~~a~~ps~~gr~~~~r~af~~q~~~~f~a~t~sn~~~q------~~~~~~ 692 (731)
T KOG0339|consen 622 TG--GGGGLGYREKD-GLGIGFRGGSNRTPSSAASPSTSGRITAMRTAFQSQFKNSFVAATPSNPPNQ------AAPKKR 692 (731)
T ss_pred CC--CCCCcccccCC-CCCccccCCCCcCcccccCCCcchhHHHHHHHHHHHhhhheeccCCCCCccc------cccCCC
Confidence 43 33477888876 8888899998888876 35666668899999999999999999998876643 489999
Q ss_pred CccccccccccccCCCCCccccCc
Q 003910 704 PALRGFVSGGSIGGDVNGTQTTGL 727 (787)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~ 727 (787)
|.+. +||+.|++.+.++|.++.
T Consensus 693 p~~~--v~~~~~~~~~~~~q~~s~ 714 (731)
T KOG0339|consen 693 PELG--VSGAPIGGPSARTQGQSA 714 (731)
T ss_pred Cccc--eecCccCCcchhccccCC
Confidence 9998 999999999988886544
No 2
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.9e-81 Score=685.54 Aligned_cols=426 Identities=50% Similarity=0.818 Sum_probs=397.4
Q ss_pred cccCccccccccCCccccCCCHHHHHHHHHHcCceeccCC-CCCccCCccc-----------------------------
Q 003910 180 IDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFD-VPRPVKTFED----------------------------- 229 (787)
Q Consensus 180 ~~~~~f~k~fy~~~~~i~~~s~~~~~~~~~~~~i~v~g~~-~P~pi~sf~~----------------------------- 229 (787)
..+.+|.+.||.+++....+...+....+.+..+.+.+.. +|.|+.+|+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~v~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 95 (519)
T KOG0331|consen 16 LDLSPFDKNFYKEHPSVKKRGSAEVERKRKKNEITVKGGDSVPKPVKSFEESGFPAKVLEEIPKLSRSSGESDSSAAFQE 95 (519)
T ss_pred cccCcccccccccccccccccccccccccCcceeeccCCCCCCCCccchhcccCCccccccccccccccccCCcchhhhc
Confidence 4568899999999988888888888888888888888766 8888766554
Q ss_pred cCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhc-CcccccCCCCEEEEEcCcH
Q 003910 230 CGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMD-QPELQKEEGPIGVICAPTR 308 (787)
Q Consensus 230 ~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~-~~~~~~~~~p~vLIl~Ptr 308 (787)
++|++.+...++..+|..|||||+++||.++.|+|++.+|.||||||++|+||++.|+.. ++...+..+|++|||+|||
T Consensus 96 ~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTR 175 (519)
T KOG0331|consen 96 LGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTR 175 (519)
T ss_pred ccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcH
Confidence 455666677788999999999999999999999999999999999999999999999998 6778888899999999999
Q ss_pred HHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCC
Q 003910 309 ELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG 388 (787)
Q Consensus 309 eLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~ 388 (787)
|||.|+..++..+.....++++|+|||.+...|+..+..+++|+|+||+||+++++...++|+++.|+||||||+|+++|
T Consensus 176 ELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmG 255 (519)
T KOG0331|consen 176 ELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMG 255 (519)
T ss_pred HHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccc
Confidence 99999999999999998999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHhhhc-CCCceEEEEeccCcHHHHHHHHHHhCCCeEEEecccc--cccccceEEEEecCCCcchHHHHHHhcC
Q 003910 389 FEPQIRSIVGQI-RPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVG--MANEDITQVVHVIPSDAEKLPWLLEKLP 465 (787)
Q Consensus 389 f~~~i~~il~~~-~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~--~~~~~i~q~~~~~~~~~~k~~~L~~~L~ 465 (787)
|+++++.|+..+ ++.+|+|++|||||..++.|+..|+.+|+.+.++... .++.+|.|.+..++ ...|...|..+|.
T Consensus 256 Fe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~-~~~K~~~l~~lL~ 334 (519)
T KOG0331|consen 256 FEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCD-ETAKLRKLGKLLE 334 (519)
T ss_pred cHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcC-HHHHHHHHHHHHH
Confidence 999999999999 7778999999999999999999999999999998664 67889999999887 6778888888777
Q ss_pred CcC--CCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEE
Q 003910 466 GMI--DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVV 543 (787)
Q Consensus 466 ~~~--~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI 543 (787)
... ..+++||||+++..|+.|+..|...++++..|||+++|.+|+.+|+.|++|++.|||||++|+||||||+|++||
T Consensus 335 ~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVI 414 (519)
T KOG0331|consen 335 DISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVI 414 (519)
T ss_pred HHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEE
Confidence 664 567999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHHhhccCCCCCCCcEEEEEEccccHHHHHHHHHHHHHcCCCccHHHHHHHHh
Q 003910 544 NFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLAMK 607 (787)
Q Consensus 544 ~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~l~~~~~~vp~~l~~~a~~ 607 (787)
|||+|.++++|+||+|||||+| +.|++++|++..+...+..+++.|..++|.||+.|..++..
T Consensus 415 nydfP~~vEdYVHRiGRTGRa~-~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v~~~l~~~~~~ 477 (519)
T KOG0331|consen 415 NYDFPNNVEDYVHRIGRTGRAG-KKGTAITFFTSDNAKLARELIKVLREAGQTVPPDLLEYARV 477 (519)
T ss_pred eCCCCCCHHHHHhhcCccccCC-CCceEEEEEeHHHHHHHHHHHHHHHHccCCCChHHHHHHhh
Confidence 9999999999999999999999 67999999999999999999999999999999999998764
No 3
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-79 Score=632.50 Aligned_cols=435 Identities=41% Similarity=0.694 Sum_probs=403.4
Q ss_pred CCCCCCCccccCccccccccCCccccCCCHHHHHHHHHHc-Cceec------cCCCCCccCCcccc-CCCHHHHHHHHHC
Q 003910 172 IPALDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSL-AIRVS------GFDVPRPVKTFEDC-GFSTQLMHAISKQ 243 (787)
Q Consensus 172 ~~~~~~~~~~~~~f~k~fy~~~~~i~~~s~~~~~~~~~~~-~i~v~------g~~~P~pi~sf~~~-~l~~~l~~~l~~~ 243 (787)
+.....+|.+.+|+.|+||.++++.+.|+..++.+++++. .|.+. ..++|+|+.+|++. ..-++++++|++.
T Consensus 159 l~~e~~kW~~lpPi~knfYke~~e~s~ls~~q~~~~r~en~~it~dd~K~gekrpIPnP~ctFddAFq~~pevmenIkK~ 238 (629)
T KOG0336|consen 159 LKDEKFKWAKLPPIKKNFYKESNETSNLSKEQLQEWRKENFNITCDDLKEGEKRPIPNPVCTFDDAFQCYPEVMENIKKT 238 (629)
T ss_pred hhhhhcccccCCchhhhhhhcCchhccCCHHHHHHHHHcCCcEEecccccCCcccCCCCcCcHHHHHhhhHHHHHHHHhc
Confidence 3334556888899999999999999999999999999876 55553 25689999999984 7889999999999
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCccc-ccCCCCEEEEEcCcHHHHHHHHHHHHHHh
Q 003910 244 GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPEL-QKEEGPIGVICAPTRELAHQIYLETKKFA 322 (787)
Q Consensus 244 g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~-~~~~~p~vLIl~PtreLa~Qi~~~~~~~~ 322 (787)
||.+|||||.|+||++|+|.|+|++|.||+|||++||+|-+.|+..++.. ....+|.+|+++|||+||.|+.-++.++.
T Consensus 239 GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kys 318 (629)
T KOG0336|consen 239 GFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYS 318 (629)
T ss_pred cCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhh
Confidence 99999999999999999999999999999999999999999999887643 34578999999999999999999888875
Q ss_pred hhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHhhhcCC
Q 003910 323 KSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRP 402 (787)
Q Consensus 323 ~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~ 402 (787)
- .+++.+|+|||.+..+|+..++.+.+|||+||++|.++...+.++|..+.||||||||+|++|+|++++++|+-.++|
T Consensus 319 y-ng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRP 397 (629)
T KOG0336|consen 319 Y-NGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRP 397 (629)
T ss_pred h-cCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCC
Confidence 4 489999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccc-cccceEEEEecCCCcchHHHHHHhcCCcCCCCCEEEEecccc
Q 003910 403 DRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMA-NEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKT 481 (787)
Q Consensus 403 ~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~-~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~ 481 (787)
++|++|.|||||..+..|+..|+.+|+.++++..... ...+.|.+ ++..+..|+..+..++.......++||||..+.
T Consensus 398 DRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i-~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~ 476 (629)
T KOG0336|consen 398 DRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNI-IVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKV 476 (629)
T ss_pred cceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeE-EecccHHHHHHHHHHHHhcCCCceEEEEEechh
Confidence 9999999999999999999999999999999988754 45677776 677788888888788887778889999999999
Q ss_pred cHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEEEecCCCCHHHHHHHhhcc
Q 003910 482 TVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRT 561 (787)
Q Consensus 482 ~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~ 561 (787)
.|+.|...|.-.|+.+..|||+..|.+|+.+++.|++|+++|||||++++||||+++++||+|||+|.+++.|+||+||+
T Consensus 477 ~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrt 556 (629)
T KOG0336|consen 477 MADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRT 556 (629)
T ss_pred hhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcEEEEEEccccHHHHHHHHHHHHHcCCCccHHHHHHHHhcC
Q 003910 562 GRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLAMKDG 609 (787)
Q Consensus 562 gR~G~~~G~~i~l~~~~d~~~~~~l~~~l~~~~~~vp~~l~~~a~~~~ 609 (787)
||+| +.|++++|++.+|...+.+|+++|+.+.|.||.+|..+|.+..
T Consensus 557 GRaG-r~G~sis~lt~~D~~~a~eLI~ILe~aeQevPdeL~~mAeryk 603 (629)
T KOG0336|consen 557 GRAG-RTGTSISFLTRNDWSMAEELIQILERAEQEVPDELVRMAERYK 603 (629)
T ss_pred ccCC-CCcceEEEEehhhHHHHHHHHHHHHHhhhhCcHHHHHHHHHHH
Confidence 9999 7899999999999999999999999999999999999998543
No 4
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.3e-78 Score=692.33 Aligned_cols=435 Identities=49% Similarity=0.807 Sum_probs=421.6
Q ss_pred CCCCCCCCccccCccccccccCCccccCCCHHHHHHHHHHcC-ceeccCCCCCccCCccccCCCHHHHHHHHHCCCCCCc
Q 003910 171 PIPALDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLA-IRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPT 249 (787)
Q Consensus 171 ~~~~~~~~~~~~~~f~k~fy~~~~~i~~~s~~~~~~~~~~~~-i~v~g~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~pt 249 (787)
.+...+|+.+.|+||+++||.+..+|..|+..++..++..+. |.+.|..+|+|+.+|.++|+...++..+++.+|.+||
T Consensus 310 ~~~~~~~S~~~~epFRknfy~e~~di~~ms~~eV~~yr~~l~~i~v~g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~ 389 (997)
T KOG0334|consen 310 NLIQVDHSKISYEPFRKNFYIEVRDIKRMSAAEVDEYRCELDGIKVKGKECPKPVTSWTQCGLSSKILETLKKLGYEKPT 389 (997)
T ss_pred ceeecccccccchhhhhcccccchhHHHHHHHHHHHhhcCccceeeccCCCCcccchHhhCCchHHHHHHHHHhcCCCCc
Confidence 567789999999999999999999999999999999999996 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceE
Q 003910 250 SIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRV 329 (787)
Q Consensus 250 p~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v 329 (787)
|||.+|||+|++|+|||++|.||||||++|+||++.|++.++.+....||.+|||+|||+||.||++++++|++.+++++
T Consensus 390 ~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~ 469 (997)
T KOG0334|consen 390 PIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRV 469 (997)
T ss_pred chhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhc---cccccceeEEEEechhhhhcCCChHHHHHHhhhcCCCceE
Q 003910 330 SAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK---ALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQT 406 (787)
Q Consensus 330 ~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~---~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ 406 (787)
+|+|||....+++.+++++++|+||||+++++++..+ ..+|.++.+||+||||+|++++|++++..|+.++++++|+
T Consensus 470 v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQt 549 (997)
T KOG0334|consen 470 VCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLRPDRQT 549 (997)
T ss_pred EEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcchhhhh
Confidence 9999999999999999999999999999999998653 4567788899999999999999999999999999999999
Q ss_pred EEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcchHHHHHHhcCCcCCCCCEEEEecccccHHHH
Q 003910 407 LLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEI 486 (787)
Q Consensus 407 ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l 486 (787)
++||||+|+.++.+++..+..|+.+.++.....+.++.|.+.++.....|+..|+++|......+++||||..+..|+.|
T Consensus 550 vlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l 629 (997)
T KOG0334|consen 550 VLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADAL 629 (997)
T ss_pred hhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHH
Confidence 99999999999999999999999999999999999999999999988999999999999988899999999999999999
Q ss_pred HHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEEEecCCCCHHHHHHHhhccCCCCC
Q 003910 487 ESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGD 566 (787)
Q Consensus 487 ~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G~ 566 (787)
.+.|.+.++.|..|||+.++.+|..+++.|+++.+.+||||++++||||++.+.+|||||+|....+|+||+|||||+|
T Consensus 630 ~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgrag- 708 (997)
T KOG0334|consen 630 LRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAG- 708 (997)
T ss_pred HHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEccccHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 003910 567 KDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLAM 606 (787)
Q Consensus 567 ~~G~~i~l~~~~d~~~~~~l~~~l~~~~~~vp~~l~~~a~ 606 (787)
+.|.||+|+++.+..++.+|+++|..+++++|..|..+..
T Consensus 709 rkg~AvtFi~p~q~~~a~dl~~al~~~~~~~P~~l~~l~~ 748 (997)
T KOG0334|consen 709 RKGAAVTFITPDQLKYAGDLCKALELSKQPVPKLLQALSE 748 (997)
T ss_pred ccceeEEEeChHHhhhHHHHHHHHHhccCCCchHHHHHHH
Confidence 6799999999999999999999999999999988887765
No 5
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=1.5e-77 Score=636.65 Aligned_cols=491 Identities=38% Similarity=0.616 Sum_probs=421.1
Q ss_pred ccCCCCCCChhHHHH-HhhhhcCchhhhhhhccCCCChHHHHHHHhhhhcCCCCCCC--CCChhhhhhhccCCCCCCCCC
Q 003910 102 RYKDDDEEDPMESFL-MAKKDVGLTLAADALRAGYDSDEEVYAAAKAVDAGMLDYDS--DDNPVVVEKKKIEPIPALDHS 178 (787)
Q Consensus 102 ~~~~~~e~d~~e~~~-~~~~~~~~~~~~~~~~~g~~~~ee~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 178 (787)
+.+++.-+|-...+. -+......+++.++..+|.|..++..+..+.. ++.+... ++.+...+.-...+.+..
T Consensus 128 ~fdWda~edT~~d~~~l~~~~~~i~~fgrG~~ag~d~~~qkk~~s~~~--~~~e~r~t~~~ke~~~~~~qk~~k~~~--- 202 (673)
T KOG0333|consen 128 VFDWDASEDTSNDYNPLYSSRHDIQLFGRGFVAGIDVKEQKKEKSKYG--EMMEKRRTEDEKEQEEELLQKVCKKEA--- 202 (673)
T ss_pred EEeecccccccccchhhhcCcccchhhccccccccchHHHHhhhhhhh--hHhhhhcchhhhhhHHHHHHHhhhhhh---
Confidence 456665554332221 22233445678999999999888776555422 2211111 111111000001111111
Q ss_pred ccccCccccccccCCccccCCCHHHHHHHHHHcCceeccCCCCCccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHH
Q 003910 179 LIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPI 258 (787)
Q Consensus 179 ~~~~~~f~k~fy~~~~~i~~~s~~~~~~~~~~~~i~v~g~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~ 258 (787)
...|+ ...|.+. .+..|++.+|..|++.++|.++|..+|+|+.+|++.+||.+++..|.+.||..|||||.++||.
T Consensus 203 k~~~D---drhW~~k-~l~Em~~rdwri~redynis~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl 278 (673)
T KOG0333|consen 203 KSGWD---DRHWSEK-VLAEMTERDWRIFREDYNISIKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPL 278 (673)
T ss_pred hcccc---ccchhhh-hHHhcCCccceeeecceeeeecCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccc
Confidence 11222 2334443 4788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCEEEEccCCCchhHHHHHHHHHHHhcCccccc----CCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEEC
Q 003910 259 ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQK----EEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYG 334 (787)
Q Consensus 259 il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~----~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~g 334 (787)
+++.+|+|++|+||||||++|++|++.+|...|++.. ..||.++||+|||+||+||.++..+|++..+++++.++|
T Consensus 279 ~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvig 358 (673)
T KOG0333|consen 279 GLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIG 358 (673)
T ss_pred hhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEec
Confidence 9999999999999999999999999999998875543 468999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHhhhcCC------------
Q 003910 335 GMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRP------------ 402 (787)
Q Consensus 335 g~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~------------ 402 (787)
|.+..++-..+..+|+|+|+||++|++.|.+.++.|..+.|||+||||+|+|++|++++..+|.+++.
T Consensus 359 g~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~ 438 (673)
T KOG0333|consen 359 GLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEG 438 (673)
T ss_pred ccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhh
Confidence 99999998899999999999999999999999999999999999999999999999999999998863
Q ss_pred -------------CceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcchHHHHHHhcCCcCC
Q 003910 403 -------------DRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMID 469 (787)
Q Consensus 403 -------------~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~ 469 (787)
-+|++|||||+|+.++.|++.||.+|+.++++..+...+.+.|.++.+.. ..|+..|+++|... .
T Consensus 439 ~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~e-d~k~kkL~eil~~~-~ 516 (673)
T KOG0333|consen 439 EERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSE-DEKRKKLIEILESN-F 516 (673)
T ss_pred HHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecc-hHHHHHHHHHHHhC-C
Confidence 17999999999999999999999999999999999999999999999865 45689999998876 4
Q ss_pred CCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEEEecCCC
Q 003910 470 DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIAR 549 (787)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~~d~p~ 549 (787)
..++|||+|+++.|+.|++.|.+.+|++..|||+.+|++|+.+|..|++|..+|||||++++||||||+|.+|||||++.
T Consensus 517 ~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmak 596 (673)
T KOG0333|consen 517 DPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAK 596 (673)
T ss_pred CCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhh
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHhhccCCCCCCCcEEEEEEccccHHHHHHHHHHHH-HcCCCccHHHHHH
Q 003910 550 DMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLI-AAGQNVSMELMDL 604 (787)
Q Consensus 550 s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~l~-~~~~~vp~~l~~~ 604 (787)
++++|+||||||||+| +.|+|++|+++.|...+++|+..|. ......|++|...
T Consensus 597 sieDYtHRIGRTgRAG-k~GtaiSflt~~dt~v~ydLkq~l~es~~s~~P~Ela~h 651 (673)
T KOG0333|consen 597 SIEDYTHRIGRTGRAG-KSGTAISFLTPADTAVFYDLKQALRESVKSHCPPELANH 651 (673)
T ss_pred hHHHHHHHhccccccc-cCceeEEEeccchhHHHHHHHHHHHHhhhccCChhhccC
Confidence 9999999999999999 7899999999999999999999887 5667788888654
No 6
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.1e-73 Score=660.06 Aligned_cols=437 Identities=47% Similarity=0.753 Sum_probs=406.8
Q ss_pred CCCCCCCCCccccCccccccccCCccccCCCHHHHHHHHHHcCcee-ccCCCCCccCCccccCCCHHHHHHHHHCCCCCC
Q 003910 170 EPIPALDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRV-SGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKP 248 (787)
Q Consensus 170 ~~~~~~~~~~~~~~~f~k~fy~~~~~i~~~s~~~~~~~~~~~~i~v-~g~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~p 248 (787)
..++.++|+...+.||.|+||.+++.+..++.+++..+++...|.+ .|..+|+|+.+|++++|++.+++.|.+.||.+|
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~p 153 (545)
T PTZ00110 74 KRLQPIDWKSINLVPFEKNFYKEHPEVSALSSKEVDEIRKEKEITIIAGENVPKPVVSFEYTSFPDYILKSLKNAGFTEP 153 (545)
T ss_pred cccCCCCCccccccchhhhcccCChhhhcCCHHHHHHHHHhcCcEEecCCCCCcccCCHhhcCCCHHHHHHHHHCCCCCC
Confidence 4577788988899999999999999999999999999999998886 789999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCce
Q 003910 249 TSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIR 328 (787)
Q Consensus 249 tp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~ 328 (787)
||+|.++||.+++|+|+|++++||||||++|++|++.+++.++......+|.+|||+|||+||.|+.++++++....+++
T Consensus 154 t~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~ 233 (545)
T PTZ00110 154 TPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIR 233 (545)
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCcc
Confidence 99999999999999999999999999999999999999988766666678999999999999999999999999888999
Q ss_pred EEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEE
Q 003910 329 VSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLL 408 (787)
Q Consensus 329 v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll 408 (787)
+++++||.....+...+..+++|||+||++|++++......|.++++|||||||+|++++|..++..|+..+++++|+++
T Consensus 234 ~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q~l~ 313 (545)
T PTZ00110 234 NTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLM 313 (545)
T ss_pred EEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCeEEE
Confidence 99999999999999999999999999999999999988888999999999999999999999999999999999999999
Q ss_pred EeccCcHHHHHHHHHHhC-CCeEEEecccc-cccccceEEEEecCCCcchHHHHHHhcCCcC-CCCCEEEEecccccHHH
Q 003910 409 FSATMPRKVEKLAREILS-DPVRVTVGEVG-MANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDE 485 (787)
Q Consensus 409 ~SAT~~~~v~~l~~~~l~-~p~~i~v~~~~-~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~ 485 (787)
||||+|..++.+++.++. +|+.+.++... ....++.+.+..+. ...|...|..+|.... ...++||||+++..|+.
T Consensus 314 ~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~-~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~ 392 (545)
T PTZ00110 314 WSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVE-EHEKRGKLKMLLQRIMRDGDKILIFVETKKGADF 392 (545)
T ss_pred EEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEe-chhHHHHHHHHHHHhcccCCeEEEEecChHHHHH
Confidence 999999999999999986 58888876654 34567777777664 4567777777776654 56699999999999999
Q ss_pred HHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEEEecCCCCHHHHHHHhhccCCCC
Q 003910 486 IESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAG 565 (787)
Q Consensus 486 l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G 565 (787)
|+..|...++.+..+||++++.+|..+++.|++|+++|||||++++||||||+|++|||||+|.++.+|+||+|||||.|
T Consensus 393 l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G 472 (545)
T PTZ00110 393 LTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAG 472 (545)
T ss_pred HHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEEccccHHHHHHHHHHHHHcCCCccHHHHHHHHhc
Q 003910 566 DKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLAMKD 608 (787)
Q Consensus 566 ~~~G~~i~l~~~~d~~~~~~l~~~l~~~~~~vp~~l~~~a~~~ 608 (787)
+.|.||+|+++.+...+.+|++.|..++|.||++|.+++...
T Consensus 473 -~~G~ai~~~~~~~~~~~~~l~~~l~~~~q~vp~~l~~~~~~~ 514 (545)
T PTZ00110 473 -AKGASYTFLTPDKYRLARDLVKVLREAKQPVPPELEKLSNER 514 (545)
T ss_pred -CCceEEEEECcchHHHHHHHHHHHHHccCCCCHHHHHHHHHh
Confidence 679999999999999999999999999999999999998754
No 7
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=2.9e-74 Score=590.55 Aligned_cols=425 Identities=43% Similarity=0.675 Sum_probs=400.9
Q ss_pred CccccCccccccccCCccccCCCHHHHHHHHHHcCceeccCCCCCccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHH
Q 003910 178 SLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALP 257 (787)
Q Consensus 178 ~~~~~~~f~k~fy~~~~~i~~~s~~~~~~~~~~~~i~v~g~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~ 257 (787)
.-|.|+.--+.-|.++-.|..|++++.+..|+.+.|.+.|..+|+|+.+|.++.||..+++.|++.|+.+|||||.|.||
T Consensus 123 kGi~Y~ePi~T~WkPP~hir~mS~e~~e~vRk~~~I~veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlP 202 (610)
T KOG0341|consen 123 KGITYEEPIKTAWKPPRHIRKMSEEQRELVRKQLHILVEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLP 202 (610)
T ss_pred CCCcccCcchhccCCcHHHHHhhHHHHHHHHHhheEEeeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcc
Confidence 34567766677799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCc---ccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhc------Cce
Q 003910 258 IILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQP---ELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH------GIR 328 (787)
Q Consensus 258 ~il~grdvii~a~TGsGKTla~llp~l~~l~~~~---~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~------~i~ 328 (787)
.+++|||+|.+|-||||||++|.||++...+.+. ++.+..||..|||||+|+||.|+++.+..++..+ .++
T Consensus 203 vvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lR 282 (610)
T KOG0341|consen 203 VVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELR 282 (610)
T ss_pred eEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhh
Confidence 9999999999999999999999999999888653 4566789999999999999999999999987654 378
Q ss_pred EEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEE
Q 003910 329 VSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLL 408 (787)
Q Consensus 329 v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll 408 (787)
..++.||.+..+|...+..|.+|+|+||++|.+++.++..+|.-+.|+++||||+|+++||+..++.|+..+...+|+++
T Consensus 283 s~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLL 362 (610)
T KOG0341|consen 283 SLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLL 362 (610)
T ss_pred hhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheee
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcchHHHHHHhcCCcCCCCCEEEEecccccHHHHHH
Q 003910 409 FSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIES 488 (787)
Q Consensus 409 ~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~ 488 (787)
||||+|..++.+++.-+..|+.+.++..+.++-++.|.+.++.. ..|+.+|++.|.+. ..+|||||..+.+++.+.+
T Consensus 363 FSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVkq-EaKiVylLeCLQKT--~PpVLIFaEkK~DVD~IhE 439 (610)
T KOG0341|consen 363 FSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQ-EAKIVYLLECLQKT--SPPVLIFAEKKADVDDIHE 439 (610)
T ss_pred eeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHHHh-hhhhhhHHHHhccC--CCceEEEeccccChHHHHH
Confidence 99999999999999999999999999999999999999988854 57999999999875 4589999999999999999
Q ss_pred HHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEEEecCCCCHHHHHHHhhccCCCCCCC
Q 003910 489 QLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKD 568 (787)
Q Consensus 489 ~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~ 568 (787)
||--+|+.++.|||+.+|.+|..+++.|+.|+.+|||||++++.|||+|++.||||||+|..+++|+||||||||.| ++
T Consensus 440 YLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg-~~ 518 (610)
T KOG0341|consen 440 YLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSG-KT 518 (610)
T ss_pred HHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCC-Cc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 78
Q ss_pred cEEEEEEccc-cHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 003910 569 GTAYTLVTQK-EARFAGELVNSLIAAGQNVSMELMDLAM 606 (787)
Q Consensus 569 G~~i~l~~~~-d~~~~~~l~~~l~~~~~~vp~~l~~~a~ 606 (787)
|.+.+|+.++ +...+.+|...|..++|.||+.|..++.
T Consensus 519 GiATTfINK~~~esvLlDLK~LL~EakQ~vP~~L~~L~~ 557 (610)
T KOG0341|consen 519 GIATTFINKNQEESVLLDLKHLLQEAKQEVPPVLAELAG 557 (610)
T ss_pred ceeeeeecccchHHHHHHHHHHHHHhhccCCHHHHHhCC
Confidence 9999999986 5677889999999999999999988864
No 8
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=2.5e-69 Score=621.85 Aligned_cols=483 Identities=29% Similarity=0.492 Sum_probs=418.5
Q ss_pred CCCCChhHHHHHhhhh--cCchhhhhhhccCC----CChHHHHHH-HhhhhcCCCCCCCCCChhhhhhhccCCCCCCCCC
Q 003910 106 DDEEDPMESFLMAKKD--VGLTLAADALRAGY----DSDEEVYAA-AKAVDAGMLDYDSDDNPVVVEKKKIEPIPALDHS 178 (787)
Q Consensus 106 ~~e~d~~e~~~~~~~~--~~~~~~~~~~~~g~----~~~ee~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (787)
+++++++.++.+.++| .+++.|.-|..||. ..|++++.. +++... ... ...-..+++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~--~~~~~~~~~~ 72 (518)
T PLN00206 8 PHEDDVVKERSIEQREALPGEPKCVVCGRYGEYICDETDDDICSLECKQALL-------------RRV--AKSRVAVGAP 72 (518)
T ss_pred cccchhhhhhhHHhcCCCCCCceEEEecCccceeccCCCCccccHHHHHHHH-------------HHH--hhccCCcCCC
Confidence 3455666777766766 66788999999994 345555443 222111 011 1112334555
Q ss_pred cccc-CccccccccCCcccc-CCCHHHHHHHHHHcCceeccCCCCCccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHH
Q 003910 179 LIDY-EPFNKDFYQDSASIS-GMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQAL 256 (787)
Q Consensus 179 ~~~~-~~f~k~fy~~~~~i~-~~s~~~~~~~~~~~~i~v~g~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai 256 (787)
...+ .+|+++||..++... .|+..++..+++.+.|.+.|..+|+|+.+|++++|++.+++.|.+.||..|||+|.++|
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~~~g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~ai 152 (518)
T PLN00206 73 KPKRLPATDECFYVRDPGSTSGLSSSQAELLRRKLEIHVKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAI 152 (518)
T ss_pred chhhcCCcCCcCCccCcchhccCCHHHHHHHHHHCCCEecCCCCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHH
Confidence 4444 778999999888765 59999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcc--cccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEEC
Q 003910 257 PIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPE--LQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYG 334 (787)
Q Consensus 257 ~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~--~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~g 334 (787)
|.+++|+|+|++++||||||++|++|++.+++.... .....++++|||+|||+||.|+.+.++.+....++++++++|
T Consensus 153 p~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~g 232 (518)
T PLN00206 153 PAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVG 232 (518)
T ss_pred HHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEEC
Confidence 999999999999999999999999999999875421 122367899999999999999999999999888899999999
Q ss_pred CCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEeccCc
Q 003910 335 GMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMP 414 (787)
Q Consensus 335 g~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~ 414 (787)
|.....+...+..+++|||+||++|++++.+..+.+.++.+|||||||+|++++|..++..++..+ +.+|+++||||++
T Consensus 233 G~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l-~~~q~l~~SATl~ 311 (518)
T PLN00206 233 GDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQAL-SQPQVLLFSATVS 311 (518)
T ss_pred CcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHHHhC-CCCcEEEEEeeCC
Confidence 999998988898999999999999999999888889999999999999999999999999999887 4689999999999
Q ss_pred HHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcchHHHHHHhcCCcC-CCCCEEEEecccccHHHHHHHHHH-
Q 003910 415 RKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQ- 492 (787)
Q Consensus 415 ~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~- 492 (787)
+.++.++..++.++..+.++........+.+.+..+.. ..|...|..+|.... ...++||||+++..++.|++.|..
T Consensus 312 ~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~-~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~ 390 (518)
T PLN00206 312 PEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVET-KQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVV 390 (518)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccc-hhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhc
Confidence 99999999999999999988777667777887776653 456666777665432 235899999999999999999975
Q ss_pred cCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEEEecCCCCHHHHHHHhhccCCCCCCCcEEE
Q 003910 493 KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAY 572 (787)
Q Consensus 493 ~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i 572 (787)
.++.+..+||++++.+|..+++.|++|+++|||||++++||||+|+|++|||||+|.++.+|+||+|||||.| ..|.++
T Consensus 391 ~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g-~~G~ai 469 (518)
T PLN00206 391 TGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMG-EKGTAI 469 (518)
T ss_pred cCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCC-CCeEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999 679999
Q ss_pred EEEccccHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 003910 573 TLVTQKEARFAGELVNSLIAAGQNVSMELMDLAM 606 (787)
Q Consensus 573 ~l~~~~d~~~~~~l~~~l~~~~~~vp~~l~~~a~ 606 (787)
+|++..+...+.++++.|..+++.+|++|+++..
T Consensus 470 ~f~~~~~~~~~~~l~~~l~~~~~~vp~~l~~~~~ 503 (518)
T PLN00206 470 VFVNEEDRNLFPELVALLKSSGAAIPRELANSRY 503 (518)
T ss_pred EEEchhHHHHHHHHHHHHHHcCCCCCHHHHhChh
Confidence 9999999999999999999999999999998664
No 9
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-69 Score=558.85 Aligned_cols=366 Identities=39% Similarity=0.642 Sum_probs=346.3
Q ss_pred ccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEE
Q 003910 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV 302 (787)
Q Consensus 223 pi~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vL 302 (787)
...+|.++++.+.+++++...+|.+||+||+++||.++.|+|||+.|+||||||.+|+||++++++.++. .+++|
T Consensus 59 ~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~-----~~~~l 133 (476)
T KOG0330|consen 59 SFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPK-----LFFAL 133 (476)
T ss_pred hhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCC-----CceEE
Confidence 3578999999999999999999999999999999999999999999999999999999999999998753 48999
Q ss_pred EEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHH-hccccccceeEEEEech
Q 003910 303 ICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLK-MKALTMSRVTYLVLDEA 381 (787)
Q Consensus 303 Il~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~-~~~~~l~~i~~lViDEa 381 (787)
||+||||||.||.+.+..+....|++++++.||.....|...+.+.+||||||||+|++++. .+.+.|..++++|+|||
T Consensus 134 VLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEA 213 (476)
T KOG0330|consen 134 VLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEA 213 (476)
T ss_pred EecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchH
Confidence 99999999999999999999999999999999999999999999999999999999999998 57888999999999999
Q ss_pred hhhhcCCChHHHHHHhhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcchHHHHH
Q 003910 382 DRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLL 461 (787)
Q Consensus 382 h~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L~ 461 (787)
|++++++|.+.+..|+..++..+|+++||||+|..+.+|.+..+.+|..+.+.......+.+.|.+..++. ..|...|+
T Consensus 214 DrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~-k~K~~yLV 292 (476)
T KOG0330|consen 214 DRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPG-KDKDTYLV 292 (476)
T ss_pred HhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccc-cccchhHH
Confidence 99999999999999999999999999999999999999999999999999999998899999999998865 46777888
Q ss_pred HhcCCcCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccE
Q 003910 462 EKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKS 541 (787)
Q Consensus 462 ~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~ 541 (787)
.+|.+.. ...+||||++...++.++-.|...|+.+..|||.|++..|.-+++.|++|.+.||||||+++||||||.|++
T Consensus 293 ~ll~e~~-g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~ 371 (476)
T KOG0330|consen 293 YLLNELA-GNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDV 371 (476)
T ss_pred HHHHhhc-CCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceE
Confidence 8877653 479999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEccccHHHHHHHHHHHHHcCCC
Q 003910 542 VVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQN 596 (787)
Q Consensus 542 VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~l~~~~~~ 596 (787)
|||||.|.+..+|+||+||++|+| ..|++++|++..|...+..|...+......
T Consensus 372 VVNyDiP~~skDYIHRvGRtaRaG-rsG~~ItlVtqyDve~~qrIE~~~gkkl~~ 425 (476)
T KOG0330|consen 372 VVNYDIPTHSKDYIHRVGRTARAG-RSGKAITLVTQYDVELVQRIEHALGKKLPE 425 (476)
T ss_pred EEecCCCCcHHHHHHHcccccccC-CCcceEEEEehhhhHHHHHHHHHHhcCCCc
Confidence 999999999999999999999999 789999999999999998888877665544
No 10
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.1e-68 Score=573.50 Aligned_cols=393 Identities=44% Similarity=0.714 Sum_probs=368.3
Q ss_pred CceeccCCCCCccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCc
Q 003910 212 AIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQP 291 (787)
Q Consensus 212 ~i~v~g~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~ 291 (787)
.+.+.|.++|.++.+|.+..+.+.+..+++..+|..|||+|+.+||.+..|+++++||+||||||.+|++|++.++++..
T Consensus 61 ~v~~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~ 140 (482)
T KOG0335|consen 61 PVKVSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEG 140 (482)
T ss_pred eeeccCCccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999764
Q ss_pred cccc-----CCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhc
Q 003910 292 ELQK-----EEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK 366 (787)
Q Consensus 292 ~~~~-----~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~ 366 (787)
.... ...|.+|||+||||||.|++++++++.....++++.+|||.+...+...+..+|||+||||++|.++++..
T Consensus 141 ~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g 220 (482)
T KOG0335|consen 141 PEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERG 220 (482)
T ss_pred cccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcc
Confidence 3221 13599999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceeEEEEechhhhhc-CCChHHHHHHhhhcCC----CceEEEEeccCcHHHHHHHHHHhCC-CeEEEeccccccc
Q 003910 367 ALTMSRVTYLVLDEADRMFD-LGFEPQIRSIVGQIRP----DRQTLLFSATMPRKVEKLAREILSD-PVRVTVGEVGMAN 440 (787)
Q Consensus 367 ~~~l~~i~~lViDEah~m~~-~~f~~~i~~il~~~~~----~~q~ll~SAT~~~~v~~l~~~~l~~-p~~i~v~~~~~~~ 440 (787)
.+.|..+.||||||||+|+| ++|.++|++|+..... .+|++|||||+|..++.++..++.+ .+.+.++..+...
T Consensus 221 ~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~ 300 (482)
T KOG0335|consen 221 KISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTS 300 (482)
T ss_pred eeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeecccc
Confidence 99999999999999999999 9999999999988753 7899999999999999999999987 8999999999999
Q ss_pred ccceEEEEecCCCcchHHHHHHhcCCcC---CCC-----CEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHH
Q 003910 441 EDITQVVHVIPSDAEKLPWLLEKLPGMI---DDG-----DVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEI 512 (787)
Q Consensus 441 ~~i~q~~~~~~~~~~k~~~L~~~L~~~~---~~~-----kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~ 512 (787)
.++.|.+.++.. ..|...|+++|.... ..+ ++||||.+++.|+.|+.+|...++++..|||+.+|.+|.++
T Consensus 301 ~ni~q~i~~V~~-~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~a 379 (482)
T KOG0335|consen 301 ENITQKILFVNE-MEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQA 379 (482)
T ss_pred ccceeEeeeecc-hhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHH
Confidence 999999999954 567788888877544 344 89999999999999999999999999999999999999999
Q ss_pred HHHhhcCCccEEEEehhhhccCCCCCccEEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEccccHHHHHHHHHHHHH
Q 003910 513 LQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIA 592 (787)
Q Consensus 513 l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~l~~ 592 (787)
++.|++|.+.|||||++++||||||+|+||||||+|.+..+|+||||||||.| ..|.++.|+...+...+..|++.|..
T Consensus 380 l~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~G-n~G~atsf~n~~~~~i~~~L~~~l~e 458 (482)
T KOG0335|consen 380 LNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVG-NGGRATSFFNEKNQNIAKALVEILTE 458 (482)
T ss_pred HHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCC-CCceeEEEeccccchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 67999999999999999999999999
Q ss_pred cCCCccHHHHHHHH
Q 003910 593 AGQNVSMELMDLAM 606 (787)
Q Consensus 593 ~~~~vp~~l~~~a~ 606 (787)
++|.||+||.+++.
T Consensus 459 a~q~vP~wl~~~~~ 472 (482)
T KOG0335|consen 459 ANQEVPQWLSELSR 472 (482)
T ss_pred hcccCcHHHHhhhh
Confidence 99999999998554
No 11
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-67 Score=557.19 Aligned_cols=365 Identities=38% Similarity=0.579 Sum_probs=337.6
Q ss_pred cCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEE
Q 003910 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI 303 (787)
Q Consensus 224 i~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLI 303 (787)
..+|.+++|+..|++++...||..|||||.++||..+-|+|++.||.||||||.+|++|+|..++-.|.. ....+|||
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~--~~~TRVLV 257 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKK--VAATRVLV 257 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCccc--CcceeEEE
Confidence 3589999999999999999999999999999999999999999999999999999999999999877643 34568999
Q ss_pred EcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHh-ccccccceeEEEEechh
Q 003910 304 CAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM-KALTMSRVTYLVLDEAD 382 (787)
Q Consensus 304 l~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~-~~~~l~~i~~lViDEah 382 (787)
|||||+|+.|++..+++++....|.+++++||.+...|-..|...+||||+|||+|++++.+ ..++|.++.++|+||||
T Consensus 258 L~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEAD 337 (691)
T KOG0338|consen 258 LVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEAD 337 (691)
T ss_pred EeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHH
Confidence 99999999999999999999999999999999999999999999999999999999999976 46889999999999999
Q ss_pred hhhcCCChHHHHHHhhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCC--CcchHHHH
Q 003910 383 RMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPS--DAEKLPWL 460 (787)
Q Consensus 383 ~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~--~~~k~~~L 460 (787)
+|++.+|..++..|+..++..||+++||||+...+.+|+.--+..|+.+.+.........++|.|+.+-. +..+-..|
T Consensus 338 RMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l 417 (691)
T KOG0338|consen 338 RMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAML 417 (691)
T ss_pred HHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHH
Confidence 9999999999999999999999999999999999999999999999999999888888888998876642 23344444
Q ss_pred HHhcCCcCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCcc
Q 003910 461 LEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIK 540 (787)
Q Consensus 461 ~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~ 540 (787)
..++.+.. ..++|||+.++..|.++.-.|.-.|+++.-|||.++|.+|.+.++.|++.+++||||||+++|||||++|.
T Consensus 418 ~~l~~rtf-~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~ 496 (691)
T KOG0338|consen 418 ASLITRTF-QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQ 496 (691)
T ss_pred HHHHHHhc-ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCcccee
Confidence 55554443 56999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEccccHHHHHHHHHHHHH
Q 003910 541 SVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIA 592 (787)
Q Consensus 541 ~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~l~~ 592 (787)
+||||++|.++..|+||+|||.|+| +.|.+++|+...|.+.+..+++.-..
T Consensus 497 tVINy~mP~t~e~Y~HRVGRTARAG-RaGrsVtlvgE~dRkllK~iik~~~~ 547 (691)
T KOG0338|consen 497 TVINYAMPKTIEHYLHRVGRTARAG-RAGRSVTLVGESDRKLLKEIIKSSTK 547 (691)
T ss_pred EEEeccCchhHHHHHHHhhhhhhcc-cCcceEEEeccccHHHHHHHHhhhhh
Confidence 9999999999999999999999999 78999999999999999999887533
No 12
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.5e-66 Score=589.91 Aligned_cols=364 Identities=47% Similarity=0.737 Sum_probs=337.8
Q ss_pred CCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEE
Q 003910 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC 304 (787)
Q Consensus 225 ~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl 304 (787)
..|++++|++.++++|.+.||..|||||.++||.++.|+|++++|+||||||++|++|+|.++.... .....+ +|||
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~--~~~~~~-aLil 105 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSV--ERKYVS-ALIL 105 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhccc--ccCCCc-eEEE
Confidence 7899999999999999999999999999999999999999999999999999999999999976431 111122 9999
Q ss_pred cCcHHHHHHHHHHHHHHhhhc-CceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhh
Q 003910 305 APTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR 383 (787)
Q Consensus 305 ~PtreLa~Qi~~~~~~~~~~~-~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~ 383 (787)
+||||||.|+++++.+++... ++++++++||.+...+...+..++||||+||+||++++.+..+.+..+.++|+||||+
T Consensus 106 ~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADr 185 (513)
T COG0513 106 APTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADR 185 (513)
T ss_pred CCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhh
Confidence 999999999999999999988 7999999999999999999998999999999999999999999999999999999999
Q ss_pred hhcCCChHHHHHHhhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEEeccccc--ccccceEEEEecCCCcchHHHHH
Q 003910 384 MFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGM--ANEDITQVVHVIPSDAEKLPWLL 461 (787)
Q Consensus 384 m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~--~~~~i~q~~~~~~~~~~k~~~L~ 461 (787)
|+++||.+.+..|+..++.++|+++||||+|..+..+++.++.+|..+.+..... ....|.|.+..+.....|+..|.
T Consensus 186 mLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~ 265 (513)
T COG0513 186 MLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLL 265 (513)
T ss_pred hhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999888875444 78899999999976556888888
Q ss_pred HhcCCcCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccE
Q 003910 462 EKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKS 541 (787)
Q Consensus 462 ~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~ 541 (787)
.++.... ..++||||+++..++.|+..|...|+.+..|||+|+|.+|.++++.|++|+++||||||+++||||||+|++
T Consensus 266 ~ll~~~~-~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~ 344 (513)
T COG0513 266 KLLKDED-EGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSH 344 (513)
T ss_pred HHHhcCC-CCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccce
Confidence 8877543 347999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEccc-cHHHHHHHHHHHHHc
Q 003910 542 VVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQK-EARFAGELVNSLIAA 593 (787)
Q Consensus 542 VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~-d~~~~~~l~~~l~~~ 593 (787)
|||||+|.+++.|+||+|||||+| +.|.+++|+++. +...+..+.+.+...
T Consensus 345 VinyD~p~~~e~yvHRiGRTgRaG-~~G~ai~fv~~~~e~~~l~~ie~~~~~~ 396 (513)
T COG0513 345 VINYDLPLDPEDYVHRIGRTGRAG-RKGVAISFVTEEEEVKKLKRIEKRLERK 396 (513)
T ss_pred eEEccCCCCHHHheeccCccccCC-CCCeEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999 789999999986 888888888887554
No 13
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1.1e-62 Score=560.04 Aligned_cols=364 Identities=39% Similarity=0.652 Sum_probs=328.1
Q ss_pred CccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccc-cCCCCEEEEE
Q 003910 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQ-KEEGPIGVIC 304 (787)
Q Consensus 226 sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~-~~~~p~vLIl 304 (787)
+|++++|++.+++.|.+.||..|||+|.++||.+++++|+|+++|||+|||++|++|++..+....... ....+++|||
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 689999999999999999999999999999999999999999999999999999999999986543221 1234689999
Q ss_pred cCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhh
Q 003910 305 APTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRM 384 (787)
Q Consensus 305 ~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m 384 (787)
+||++||.|+.+.++.+....++++..++||.+...++..+..+++|||+||++|++++....+.++++++|||||||+|
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~l 161 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRM 161 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHH
Confidence 99999999999999999988899999999999998888888888999999999999999888888999999999999999
Q ss_pred hcCCChHHHHHHhhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcchHHHHHHhc
Q 003910 385 FDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKL 464 (787)
Q Consensus 385 ~~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L 464 (787)
++++|...+..++..++..+|+++||||+++.+..++.+++.+|..+.+.........+.+.+..+.. ..+...|..++
T Consensus 162 l~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~l~ 240 (456)
T PRK10590 162 LDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDK-KRKRELLSQMI 240 (456)
T ss_pred hccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCH-HHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988876666666677777776643 34444444444
Q ss_pred CCcCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEEE
Q 003910 465 PGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN 544 (787)
Q Consensus 465 ~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~ 544 (787)
.. ....++||||+++..++.|++.|...++.+..+||++++.+|..+++.|++|+++|||||+++++|||||+|++|||
T Consensus 241 ~~-~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~ 319 (456)
T PRK10590 241 GK-GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVN 319 (456)
T ss_pred Hc-CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEE
Confidence 32 24468999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHhhccCCCCCCCcEEEEEEccccHHHHHHHHHHHHH
Q 003910 545 FDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIA 592 (787)
Q Consensus 545 ~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~l~~ 592 (787)
|++|.++.+|+||+||+||.| ..|.|++|++..|...+..+.+.|..
T Consensus 320 ~~~P~~~~~yvqR~GRaGR~g-~~G~ai~l~~~~d~~~~~~ie~~l~~ 366 (456)
T PRK10590 320 YELPNVPEDYVHRIGRTGRAA-ATGEALSLVCVDEHKLLRDIEKLLKK 366 (456)
T ss_pred eCCCCCHHHhhhhccccccCC-CCeeEEEEecHHHHHHHHHHHHHhcC
Confidence 999999999999999999999 67999999999999888888776643
No 14
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7e-64 Score=496.25 Aligned_cols=377 Identities=33% Similarity=0.561 Sum_probs=353.4
Q ss_pred CCccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCE
Q 003910 221 PRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPI 300 (787)
Q Consensus 221 P~pi~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~ 300 (787)
-+++.+|++++|++.+++.+...||++|..+|+.||+.|++|+|+|.++..|+|||.+|.+.+|..+--. .....
T Consensus 23 ~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~-----~r~tQ 97 (400)
T KOG0328|consen 23 VKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDIS-----VRETQ 97 (400)
T ss_pred cccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccc-----cceee
Confidence 3567899999999999999999999999999999999999999999999999999999998888765322 23467
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEec
Q 003910 301 GVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDE 380 (787)
Q Consensus 301 vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDE 380 (787)
+|||.||||||.|+.+.+..+....++.+..+.||.+..+.++++..|+++|.+||+++++++++..+.-..+++||+||
T Consensus 98 ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDE 177 (400)
T KOG0328|consen 98 ALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDE 177 (400)
T ss_pred EEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCChHHHHHHhhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcchHHHH
Q 003910 381 ADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWL 460 (787)
Q Consensus 381 ah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L 460 (787)
||.|++.+|..++..++..++|..|++++|||+|.++.++...|+.+|+.+.+...+.+.+.|.|.+..+..+.-|+..|
T Consensus 178 aDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtL 257 (400)
T KOG0328|consen 178 ADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTL 257 (400)
T ss_pred HHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988777788877
Q ss_pred HHhcCCcCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCcc
Q 003910 461 LEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIK 540 (787)
Q Consensus 461 ~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~ 540 (787)
..+... +.-.+.+||||++..++.|.+.|+...+.|.++||+|++++|+.++.+|++|+.+|||+|++-+||+|+|.|+
T Consensus 258 cdLYd~-LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVs 336 (400)
T KOG0328|consen 258 CDLYDT-LTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVS 336 (400)
T ss_pred HHHhhh-hehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeE
Confidence 775543 2345899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEccccHHHHHHHHHHHHHcCCCccHHHHHH
Q 003910 541 SVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDL 604 (787)
Q Consensus 541 ~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~l~~~~~~vp~~l~~~ 604 (787)
+|||||+|.+.+.|+|||||.||.| ++|+++-|+...|.+.+.++.+.+.-...++|..+.++
T Consensus 337 lviNYDLP~nre~YIHRIGRSGRFG-RkGvainFVk~~d~~~lrdieq~yst~i~emp~nvad~ 399 (400)
T KOG0328|consen 337 LVINYDLPNNRELYIHRIGRSGRFG-RKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMNVADL 399 (400)
T ss_pred EEEecCCCccHHHHhhhhccccccC-CcceEEEEecHHHHHHHHHHHHHHhhhcccccchhhhc
Confidence 9999999999999999999999999 67999999999999999999999998888888876553
No 15
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=4.5e-61 Score=556.77 Aligned_cols=365 Identities=37% Similarity=0.607 Sum_probs=327.7
Q ss_pred CCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccc--cCCCCEEE
Q 003910 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQ--KEEGPIGV 302 (787)
Q Consensus 225 ~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~--~~~~p~vL 302 (787)
.+|++++|++.+++.|.+.||..|||+|.++||.++.|+|+|+++|||||||++|++|++.+++..+... ....+++|
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 4699999999999999999999999999999999999999999999999999999999999987654322 22358999
Q ss_pred EEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhc-cccccceeEEEEech
Q 003910 303 ICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK-ALTMSRVTYLVLDEA 381 (787)
Q Consensus 303 Il~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~-~~~l~~i~~lViDEa 381 (787)
||+||++||.|+++.+.+|....++++..++||.....+...+..+++|||+||++|++++... .+.+..+++||||||
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEA 168 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEA 168 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCH
Confidence 9999999999999999999998899999999999988888888888999999999999998764 467889999999999
Q ss_pred hhhhcCCChHHHHHHhhhcCC--CceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcchHHH
Q 003910 382 DRMFDLGFEPQIRSIVGQIRP--DRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPW 459 (787)
Q Consensus 382 h~m~~~~f~~~i~~il~~~~~--~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~ 459 (787)
|+|++++|...+..++..++. .+|+++||||++..+..++..++.+|..+.+.........+.+.+... ....|...
T Consensus 169 h~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~-~~~~k~~~ 247 (572)
T PRK04537 169 DRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFP-ADEEKQTL 247 (572)
T ss_pred HHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEec-CHHHHHHH
Confidence 999999999999999998876 789999999999999999999999998877765555556677766654 34567777
Q ss_pred HHHhcCCcCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCc
Q 003910 460 LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSI 539 (787)
Q Consensus 460 L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v 539 (787)
|+.++... ...++||||+++..++.|++.|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||||+|
T Consensus 248 L~~ll~~~-~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V 326 (572)
T PRK04537 248 LLGLLSRS-EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGV 326 (572)
T ss_pred HHHHHhcc-cCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCC
Confidence 77776542 45689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEccccHHHHHHHHHHHHH
Q 003910 540 KSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIA 592 (787)
Q Consensus 540 ~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~l~~ 592 (787)
++|||||+|.++.+|+||+||+||.| +.|.|++|+++.+...+.++.+.+..
T Consensus 327 ~~VInyd~P~s~~~yvqRiGRaGR~G-~~G~ai~~~~~~~~~~l~~i~~~~~~ 378 (572)
T PRK04537 327 KYVYNYDLPFDAEDYVHRIGRTARLG-EEGDAISFACERYAMSLPDIEAYIEQ 378 (572)
T ss_pred CEEEEcCCCCCHHHHhhhhcccccCC-CCceEEEEecHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999 67999999999888888877666543
No 16
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.1e-60 Score=537.33 Aligned_cols=366 Identities=37% Similarity=0.580 Sum_probs=329.8
Q ss_pred cCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccc--cCCCCEE
Q 003910 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQ--KEEGPIG 301 (787)
Q Consensus 224 i~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~--~~~~p~v 301 (787)
-.+|++++|++.++++|...||..|||+|.++||.+++|+|+|++||||||||++|++|++..++..+... ...++++
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~ 86 (423)
T PRK04837 7 EQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRA 86 (423)
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 36899999999999999999999999999999999999999999999999999999999999997654321 2346899
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEech
Q 003910 302 VICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEA 381 (787)
Q Consensus 302 LIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEa 381 (787)
|||+||++||.|+++.+..++...++++.+++||.....+...+..+++|||+||++|.+++....+.+..+.+||||||
T Consensus 87 lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEa 166 (423)
T PRK04837 87 LIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEA 166 (423)
T ss_pred EEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecH
Confidence 99999999999999999999998899999999999888888888888999999999999999888889999999999999
Q ss_pred hhhhcCCChHHHHHHhhhcCC--CceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcchHHH
Q 003910 382 DRMFDLGFEPQIRSIVGQIRP--DRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPW 459 (787)
Q Consensus 382 h~m~~~~f~~~i~~il~~~~~--~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~ 459 (787)
|+|++++|...+..++..++. .+++++||||++..+..++..++.+|..+.+.........+.+.+.+. ....|...
T Consensus 167 d~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~-~~~~k~~~ 245 (423)
T PRK04837 167 DRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYP-SNEEKMRL 245 (423)
T ss_pred HHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeC-CHHHHHHH
Confidence 999999999999999998874 578899999999999999999999999888776655556666665544 34567777
Q ss_pred HHHhcCCcCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCc
Q 003910 460 LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSI 539 (787)
Q Consensus 460 L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v 539 (787)
|..++... ...++||||+++..|+.++..|...++.+..+||++++.+|..+++.|++|+++|||||++++||||||+|
T Consensus 246 l~~ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v 324 (423)
T PRK04837 246 LQTLIEEE-WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAV 324 (423)
T ss_pred HHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCcccc
Confidence 77766543 35689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEccccHHHHHHHHHHHHH
Q 003910 540 KSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIA 592 (787)
Q Consensus 540 ~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~l~~ 592 (787)
++|||||+|.++..|+||+||+||.| +.|.|++|+++.+...+..+.+.+..
T Consensus 325 ~~VI~~d~P~s~~~yiqR~GR~gR~G-~~G~ai~~~~~~~~~~~~~i~~~~~~ 376 (423)
T PRK04837 325 THVFNYDLPDDCEDYVHRIGRTGRAG-ASGHSISLACEEYALNLPAIETYIGH 376 (423)
T ss_pred CEEEEeCCCCchhheEeccccccCCC-CCeeEEEEeCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999 67999999999988888877665543
No 17
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-61 Score=494.93 Aligned_cols=394 Identities=34% Similarity=0.499 Sum_probs=340.6
Q ss_pred ccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEE
Q 003910 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV 302 (787)
Q Consensus 223 pi~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vL 302 (787)
....|..+||.+++.+.|+..++.+|||+|..|||.|+.|+|+|.||.||||||++|.+|+|+.+.+.| .+-++|
T Consensus 5 t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP-----~giFal 79 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDP-----YGIFAL 79 (442)
T ss_pred ccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCC-----CcceEE
Confidence 356799999999999999999999999999999999999999999999999999999999999997764 688999
Q ss_pred EEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhc----cccccceeEEEE
Q 003910 303 ICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK----ALTMSRVTYLVL 378 (787)
Q Consensus 303 Il~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~----~~~l~~i~~lVi 378 (787)
|+.|||+||.|+.+.|..+.+..++++++++||...-.+...|...+||||+|||+|.+++..+ ...+.+++++|+
T Consensus 80 vlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVl 159 (442)
T KOG0340|consen 80 VLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVL 159 (442)
T ss_pred EecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEe
Confidence 9999999999999999999999999999999999999999999999999999999999998764 345789999999
Q ss_pred echhhhhcCCChHHHHHHhhhcCCCceEEEEeccCcHHHHHHHHHHhCC--CeEEEecccccccccceEEEEecCCCcch
Q 003910 379 DEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSD--PVRVTVGEVGMANEDITQVVHVIPSDAEK 456 (787)
Q Consensus 379 DEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~--p~~i~v~~~~~~~~~i~q~~~~~~~~~~k 456 (787)
||||+|++..|...+..++..++..||+++||||+.+.+..+...-... +..+.........+.+.|.+..++ ...|
T Consensus 160 DEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~-~~vk 238 (442)
T KOG0340|consen 160 DEADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVS-IDVK 238 (442)
T ss_pred cchhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecc-hhhh
Confidence 9999999999999999999999999999999999998877665544443 233333333345566777777774 4578
Q ss_pred HHHHHHhcCCcCC--CCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccC
Q 003910 457 LPWLLEKLPGMID--DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGL 534 (787)
Q Consensus 457 ~~~L~~~L~~~~~--~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGl 534 (787)
..+|+..|..... .+.++||+|+..+|+.|+..|+...+.+..+|+.|+|.+|..++.+|+++..+||||||+++|||
T Consensus 239 daYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGL 318 (442)
T KOG0340|consen 239 DAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGL 318 (442)
T ss_pred HHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCC
Confidence 8888888887665 67899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEccccHHHHHHHHHHHHHcCCC----------------cc
Q 003910 535 DIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQN----------------VS 598 (787)
Q Consensus 535 Dip~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~l~~~~~~----------------vp 598 (787)
|||.|..|||||.|.+|.+|+||+||+.|+| +.|.+++|+++.|...+..|.+.+-..-.+ +.
T Consensus 319 DIP~V~LVvN~diPr~P~~yiHRvGRtARAG-R~G~aiSivt~rDv~l~~aiE~~igkKl~e~~~~~~~~~~~~t~V~~a 397 (442)
T KOG0340|consen 319 DIPTVELVVNHDIPRDPKDYIHRVGRTARAG-RKGMAISIVTQRDVELLQAIEEEIGKKLTEYNKVQRTVELYVTQVTVA 397 (442)
T ss_pred CCCceeEEEecCCCCCHHHHHHhhcchhccc-CCcceEEEechhhHHHHHHHHHHHhcccccccccchhhheehhhHHHH
Confidence 9999999999999999999999999999999 689999999999998887776554222111 12
Q ss_pred HHHHHHHHhcCcccccccccCCCCC
Q 003910 599 MELMDLAMKDGRFRSKRDARKGGGK 623 (787)
Q Consensus 599 ~~l~~~a~~~~~~~~~~~~r~~g~~ 623 (787)
.....+.+.+..|..++..|+...+
T Consensus 398 krea~m~m~~~~F~er~q~R~~k~~ 422 (442)
T KOG0340|consen 398 KREAEMKMDNNGFGERAQKRRKKRK 422 (442)
T ss_pred HHHHHHHhhhcchhHHHHHHHHHHh
Confidence 2233456667777766654444333
No 18
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=6.7e-61 Score=508.73 Aligned_cols=361 Identities=38% Similarity=0.556 Sum_probs=331.8
Q ss_pred cCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEE
Q 003910 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI 303 (787)
Q Consensus 224 i~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLI 303 (787)
...|++..|++..+++|+.+||..+|++|...|+.++.|+|+++.|.||+|||+||+||++.++.+.+...+ ++-.+||
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r-~~~~vlI 159 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPR-NGTGVLI 159 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCC-CCeeEEE
Confidence 456888899999999999999999999999999999999999999999999999999999999988754443 6788999
Q ss_pred EcCcHHHHHHHHHHHHHHhhhc-CceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhcc-ccccceeEEEEech
Q 003910 304 CAPTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKA-LTMSRVTYLVLDEA 381 (787)
Q Consensus 304 l~PtreLa~Qi~~~~~~~~~~~-~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~-~~l~~i~~lViDEa 381 (787)
|||||+||.|++.+++++...+ ++.+.++.||........++..+++|+|+|||||++++++.. +....++++|+|||
T Consensus 160 i~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEA 239 (543)
T KOG0342|consen 160 ICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEA 239 (543)
T ss_pred ecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecc
Confidence 9999999999999999999988 899999999999998888998999999999999999998743 44566789999999
Q ss_pred hhhhcCCChHHHHHHhhhcCCCceEEEEeccCcHHHHHHHHHHhCC-CeEEEeccc--ccccccceEEEEecCCCcchHH
Q 003910 382 DRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSD-PVRVTVGEV--GMANEDITQVVHVIPSDAEKLP 458 (787)
Q Consensus 382 h~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~-p~~i~v~~~--~~~~~~i~q~~~~~~~~~~k~~ 458 (787)
|+++++||+..+..|+..++..+|+++||||.+..++++++-.+.. |+.+.+... ..+...+.|.+.+++.. .++.
T Consensus 240 DrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~-~~f~ 318 (543)
T KOG0342|consen 240 DRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSD-SRFS 318 (543)
T ss_pred hhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEecccc-chHH
Confidence 9999999999999999999999999999999999999999988765 777766443 35667888988888664 4588
Q ss_pred HHHHhcCCcCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCC
Q 003910 459 WLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKS 538 (787)
Q Consensus 459 ~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~ 538 (787)
.|+.+|++.....++||||+|......+++.|+...++|..|||.++|..|..+..+|++.+.-|||||||++||+|+|+
T Consensus 319 ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~ 398 (543)
T KOG0342|consen 319 LLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPD 398 (543)
T ss_pred HHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCC
Confidence 88899988877789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEccccHHHHHHHH
Q 003910 539 IKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELV 587 (787)
Q Consensus 539 v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~ 587 (787)
|++||.||+|.++.+|+||+|||||.| +.|.++.|+.+.+..++..|.
T Consensus 399 V~~VvQ~~~P~d~~~YIHRvGRTaR~g-k~G~alL~l~p~El~Flr~LK 446 (543)
T KOG0342|consen 399 VDWVVQYDPPSDPEQYIHRVGRTAREG-KEGKALLLLAPWELGFLRYLK 446 (543)
T ss_pred ceEEEEeCCCCCHHHHHHHhccccccC-CCceEEEEeChhHHHHHHHHh
Confidence 999999999999999999999999999 789999999999998887775
No 19
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=2.2e-58 Score=526.42 Aligned_cols=358 Identities=40% Similarity=0.621 Sum_probs=326.2
Q ss_pred CCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEE
Q 003910 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC 304 (787)
Q Consensus 225 ~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl 304 (787)
.+|++++|++.+++.|.+.||..|||+|.++||.+++++|+|++||||+|||++|++|++.++... ...+++|||
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~-----~~~~~~lil 78 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK-----RFRVQALVL 78 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc-----cCCceEEEE
Confidence 579999999999999999999999999999999999999999999999999999999999988432 235679999
Q ss_pred cCcHHHHHHHHHHHHHHhhhc-CceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhh
Q 003910 305 APTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR 383 (787)
Q Consensus 305 ~PtreLa~Qi~~~~~~~~~~~-~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~ 383 (787)
+||++||.|+.++++.++... ++++..++||.+...+...+..+++|+|+||++|.+++.+..+.+.++++|||||||+
T Consensus 79 ~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~ 158 (460)
T PRK11776 79 CPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADR 158 (460)
T ss_pred eCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHH
Confidence 999999999999999988654 7899999999999999888989999999999999999998888899999999999999
Q ss_pred hhcCCChHHHHHHhhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcchHHHHHHh
Q 003910 384 MFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEK 463 (787)
Q Consensus 384 m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~ 463 (787)
|++++|...+..++..+++.+|+++||||+|+.+..++..++.+|..+.+.... ....+.+.+..+.. ..|...|..+
T Consensus 159 ~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~-~~k~~~l~~l 236 (460)
T PRK11776 159 MLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQRFYEVSP-DERLPALQRL 236 (460)
T ss_pred HhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEEEEEeCc-HHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988876544 34457777776654 3477777777
Q ss_pred cCCcCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEE
Q 003910 464 LPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVV 543 (787)
Q Consensus 464 L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI 543 (787)
+... ...++||||+++..++.+++.|...++.+..+||+|++.+|+.+++.|++|.++|||||+++++|||||++++||
T Consensus 237 l~~~-~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI 315 (460)
T PRK11776 237 LLHH-QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVI 315 (460)
T ss_pred HHhc-CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEE
Confidence 7543 456899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHHhhccCCCCCCCcEEEEEEccccHHHHHHHHHHHH
Q 003910 544 NFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLI 591 (787)
Q Consensus 544 ~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~l~ 591 (787)
+||+|.++..|+||+|||||.| +.|.||+|+++.+...+..+.+.+.
T Consensus 316 ~~d~p~~~~~yiqR~GRtGR~g-~~G~ai~l~~~~e~~~~~~i~~~~~ 362 (460)
T PRK11776 316 NYELARDPEVHVHRIGRTGRAG-SKGLALSLVAPEEMQRANAIEDYLG 362 (460)
T ss_pred EecCCCCHhHhhhhcccccCCC-CcceEEEEEchhHHHHHHHHHHHhC
Confidence 9999999999999999999999 6799999999998887777766553
No 20
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=2e-58 Score=537.54 Aligned_cols=358 Identities=41% Similarity=0.656 Sum_probs=326.1
Q ss_pred cCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEE
Q 003910 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI 303 (787)
Q Consensus 224 i~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLI 303 (787)
..+|.+++|++.++++|.+.||.+|||+|.++||.++.++|+|++|+||+|||++|++|++..+... ...+++||
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~-----~~~~~~LI 79 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE-----LKAPQILV 79 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc-----cCCCeEEE
Confidence 3469999999999999999999999999999999999999999999999999999999999887432 34678999
Q ss_pred EcCcHHHHHHHHHHHHHHhhhc-CceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechh
Q 003910 304 CAPTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD 382 (787)
Q Consensus 304 l~PtreLa~Qi~~~~~~~~~~~-~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah 382 (787)
|+||++||.|+++++.++.... ++.++.++||.....+...+..+++|||+||++|++++.+..+.++.+.+|||||||
T Consensus 80 L~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd 159 (629)
T PRK11634 80 LAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEAD 159 (629)
T ss_pred EeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHH
Confidence 9999999999999999998765 799999999999888888888899999999999999999888889999999999999
Q ss_pred hhhcCCChHHHHHHhhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcchHHHHHH
Q 003910 383 RMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLE 462 (787)
Q Consensus 383 ~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L~~ 462 (787)
.|++++|...+..++..++..+|+++||||+|..+..++..|+.+|..+.+.........+.+.+..+. ...|...|..
T Consensus 160 ~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~-~~~k~~~L~~ 238 (629)
T PRK11634 160 EMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVW-GMRKNEALVR 238 (629)
T ss_pred HHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEec-hhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999998888766666677777776654 3457777777
Q ss_pred hcCCcCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEE
Q 003910 463 KLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSV 542 (787)
Q Consensus 463 ~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~V 542 (787)
+|... ...++||||+++..++.|+..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+|++|
T Consensus 239 ~L~~~-~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~V 317 (629)
T PRK11634 239 FLEAE-DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLV 317 (629)
T ss_pred HHHhc-CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEE
Confidence 76543 34689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEccccHHHHHHHHHH
Q 003910 543 VNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNS 589 (787)
Q Consensus 543 I~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~ 589 (787)
||||+|.++..|+||+|||||+| +.|.|++|+++.+...+..+.+.
T Consensus 318 I~~d~P~~~e~yvqRiGRtGRaG-r~G~ai~~v~~~e~~~l~~ie~~ 363 (629)
T PRK11634 318 VNYDIPMDSESYVHRIGRTGRAG-RAGRALLFVENRERRLLRNIERT 363 (629)
T ss_pred EEeCCCCCHHHHHHHhccccCCC-CcceEEEEechHHHHHHHHHHHH
Confidence 99999999999999999999999 68999999998877666665443
No 21
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-58 Score=486.94 Aligned_cols=356 Identities=36% Similarity=0.550 Sum_probs=316.6
Q ss_pred CCccccC--CCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEE
Q 003910 225 KTFEDCG--FSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV 302 (787)
Q Consensus 225 ~sf~~~~--l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vL 302 (787)
..|++++ |++++++++...||.+.||+|..+||.++.++|+++.++||||||+||++|++..++.+..-.+...-.+|
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgal 83 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGAL 83 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEE
Confidence 3566664 55999999999999999999999999999999999999999999999999999999765432222234689
Q ss_pred EEcCcHHHHHHHHHHHHHHhhh-cCceEEEEECCCChHHHHHHHhc-CCcEEEeCHHHHHHHHHhcccc--ccceeEEEE
Q 003910 303 ICAPTRELAHQIYLETKKFAKS-HGIRVSAVYGGMSKLDQFKELKA-GCEIVIATPGRLIDMLKMKALT--MSRVTYLVL 378 (787)
Q Consensus 303 Il~PtreLa~Qi~~~~~~~~~~-~~i~v~~~~gg~~~~~~~~~l~~-~~dIIV~Tp~~L~~~l~~~~~~--l~~i~~lVi 378 (787)
||+||||||.||.+.+..|... ..+++.+++||....+.+..+.. +++|+|+|||||.+++.+.... +..+++||+
T Consensus 84 IIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVL 163 (567)
T KOG0345|consen 84 IISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVL 163 (567)
T ss_pred EecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEe
Confidence 9999999999999999999887 68999999999999888887764 6889999999999999875444 459999999
Q ss_pred echhhhhcCCChHHHHHHhhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEEeccccc--ccccceEEEEecCCCcch
Q 003910 379 DEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGM--ANEDITQVVHVIPSDAEK 456 (787)
Q Consensus 379 DEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~--~~~~i~q~~~~~~~~~~k 456 (787)
||||+++++||...+..|+..+|.+|+|=+||||...++.+|++..+.||+.+.+..... ++..+...+..+ ....|
T Consensus 164 DEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~-~a~eK 242 (567)
T KOG0345|consen 164 DEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVC-EADEK 242 (567)
T ss_pred cchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEe-cHHHH
Confidence 999999999999999999999999999999999999999999999999999999987765 444455555555 56789
Q ss_pred HHHHHHhcCCcCCCCCEEEEecccccHHHHHHHHHHc--CCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccC
Q 003910 457 LPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK--GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGL 534 (787)
Q Consensus 457 ~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~--g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGl 534 (787)
...|+.+|... ...++|||.+|...++.....|... ...+..+||.|.+..|..++..|.+-.-.||+|||+++|||
T Consensus 243 ~~~lv~~L~~~-~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGl 321 (567)
T KOG0345|consen 243 LSQLVHLLNNN-KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGL 321 (567)
T ss_pred HHHHHHHHhcc-ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccC
Confidence 99999998863 5679999999999999999888764 67899999999999999999999998888999999999999
Q ss_pred CCCCccEEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEccccHHHH
Q 003910 535 DIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFA 583 (787)
Q Consensus 535 Dip~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~ 583 (787)
|||+|++||+||+|.++..|+||+|||+|+| +.|.|++|+.+.+..+.
T Consensus 322 Dip~iD~VvQ~DpP~~~~~FvHR~GRTaR~g-r~G~Aivfl~p~E~aYv 369 (567)
T KOG0345|consen 322 DIPGIDLVVQFDPPKDPSSFVHRCGRTARAG-REGNAIVFLNPREEAYV 369 (567)
T ss_pred CCCCceEEEecCCCCChhHHHhhcchhhhcc-CccceEEEecccHHHHH
Confidence 9999999999999999999999999999999 67999999999766554
No 22
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=2.7e-57 Score=514.11 Aligned_cols=363 Identities=37% Similarity=0.607 Sum_probs=330.8
Q ss_pred CccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEc
Q 003910 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA 305 (787)
Q Consensus 226 sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~ 305 (787)
+|++++|++.+++.|.+.||.+||++|.++|+.++.++|+|+++|||+|||++|++|++.+++..+.. ....+++|||+
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~-~~~~~~~lil~ 80 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRR-KSGPPRILILT 80 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhcccc-CCCCceEEEEC
Confidence 69999999999999999999999999999999999999999999999999999999999999764322 23357899999
Q ss_pred CcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhh
Q 003910 306 PTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (787)
Q Consensus 306 PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~ 385 (787)
||++||.|+++.+..++...++++..++||.....+...+..+++|||+||++|++++....+.+..+.+|||||||+|+
T Consensus 81 Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l 160 (434)
T PRK11192 81 PTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRML 160 (434)
T ss_pred CcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHh
Confidence 99999999999999999989999999999999888877777889999999999999999888889999999999999999
Q ss_pred cCCChHHHHHHhhhcCCCceEEEEeccCcH-HHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcchHHHHHHhc
Q 003910 386 DLGFEPQIRSIVGQIRPDRQTLLFSATMPR-KVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKL 464 (787)
Q Consensus 386 ~~~f~~~i~~il~~~~~~~q~ll~SAT~~~-~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L 464 (787)
+++|...+..+...++..+|+++||||++. .+..++..++.+|..+.+.........+.+.+..+.....|...|..++
T Consensus 161 ~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~ 240 (434)
T PRK11192 161 DMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHLL 240 (434)
T ss_pred CCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHHHH
Confidence 999999999999999989999999999985 5888999999999988877666666777887777765566777777766
Q ss_pred CCcCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEEE
Q 003910 465 PGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN 544 (787)
Q Consensus 465 ~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~ 544 (787)
.. ....++||||+++..++.|+..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++++|||
T Consensus 241 ~~-~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~ 319 (434)
T PRK11192 241 KQ-PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVIN 319 (434)
T ss_pred hc-CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEE
Confidence 53 24569999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHhhccCCCCCCCcEEEEEEccccHHHHHHHHHHHH
Q 003910 545 FDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLI 591 (787)
Q Consensus 545 ~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~l~ 591 (787)
||+|.+...|+||+||+||.| ..|.+++|++..|...+..+.+.+.
T Consensus 320 ~d~p~s~~~yiqr~GR~gR~g-~~g~ai~l~~~~d~~~~~~i~~~~~ 365 (434)
T PRK11192 320 FDMPRSADTYLHRIGRTGRAG-RKGTAISLVEAHDHLLLGKIERYIE 365 (434)
T ss_pred ECCCCCHHHHhhcccccccCC-CCceEEEEecHHHHHHHHHHHHHHh
Confidence 999999999999999999999 6799999999999988888776654
No 23
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.1e-60 Score=474.27 Aligned_cols=366 Identities=30% Similarity=0.523 Sum_probs=338.7
Q ss_pred CCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEE
Q 003910 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC 304 (787)
Q Consensus 225 ~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl 304 (787)
..|+++.|..+|+..|...||.+|+|+|.++||+++.|+|++..|..|+|||.+|++|+|..+-.. .+.-.++|+
T Consensus 85 ~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~-----~~~IQ~~il 159 (459)
T KOG0326|consen 85 NEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPK-----KNVIQAIIL 159 (459)
T ss_pred ccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCcc-----ccceeEEEE
Confidence 579999999999999999999999999999999999999999999999999999999999987432 345678999
Q ss_pred cCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhh
Q 003910 305 APTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRM 384 (787)
Q Consensus 305 ~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m 384 (787)
+||||||.|+...++.+.+..++.|.+.+||.+....+-.+....+++|+||+|+++++++..-.++.+.++|+||||.|
T Consensus 160 VPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKl 239 (459)
T KOG0326|consen 160 VPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKL 239 (459)
T ss_pred eecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhh
Confidence 99999999999999999999999999999999999998889899999999999999999999999999999999999999
Q ss_pred hcCCChHHHHHHhhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcchHHHHHHhc
Q 003910 385 FDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKL 464 (787)
Q Consensus 385 ~~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L 464 (787)
++..|.+.+..++..+++.+|++++|||+|-.+..+..+++.+|..|..- ...+...++|.+-++. +..|...|-.++
T Consensus 240 Ls~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM-~eLtl~GvtQyYafV~-e~qKvhCLntLf 317 (459)
T KOG0326|consen 240 LSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLM-EELTLKGVTQYYAFVE-ERQKVHCLNTLF 317 (459)
T ss_pred hchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehh-hhhhhcchhhheeeec-hhhhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999988763 3466778999988884 456776665555
Q ss_pred CCcCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEEE
Q 003910 465 PGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN 544 (787)
Q Consensus 465 ~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~ 544 (787)
.++ .-.+.|||||+...++.|++.+.+.||.|..+|..|-|+.|.+++..|++|.++.|||||.+.||+||+.+++|||
T Consensus 318 skL-qINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVIN 396 (459)
T KOG0326|consen 318 SKL-QINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVIN 396 (459)
T ss_pred HHh-cccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEe
Confidence 443 4568999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHhhccCCCCCCCcEEEEEEccccHHHHHHHHHHHHHcCCCccH
Q 003910 545 FDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSM 599 (787)
Q Consensus 545 ~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~l~~~~~~vp~ 599 (787)
||+|.++++|+|||||.||.| +.|.|+.|++.+|...+..+...|-..-.++|.
T Consensus 397 FDfpk~aEtYLHRIGRsGRFG-hlGlAInLityedrf~L~~IE~eLGtEI~pip~ 450 (459)
T KOG0326|consen 397 FDFPKNAETYLHRIGRSGRFG-HLGLAINLITYEDRFNLYRIEQELGTEIKPIPS 450 (459)
T ss_pred cCCCCCHHHHHHHccCCccCC-CcceEEEEEehhhhhhHHHHHHHhccccccCCC
Confidence 999999999999999999999 789999999999999999988888666666664
No 24
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=5.5e-58 Score=489.33 Aligned_cols=371 Identities=34% Similarity=0.542 Sum_probs=331.0
Q ss_pred CHHHHHHHHHHcC-ceeccCCCCCccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHH
Q 003910 200 SEQDVMEYKKSLA-IRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 200 s~~~~~~~~~~~~-i~v~g~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla 278 (787)
.++++.++..++. +. ...+..|++++|+...++.|+..+|..||.+|+++||..++|+|+|..|.||||||+|
T Consensus 49 Eee~i~~l~~ky~ei~------~~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLA 122 (758)
T KOG0343|consen 49 EEEEIEELKQKYAEID------STTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLA 122 (758)
T ss_pred hHHHHHHHHHHHHHhh------hhhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceee
Confidence 3455666666552 22 2345789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHH
Q 003910 279 FVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGR 358 (787)
Q Consensus 279 ~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~ 358 (787)
|++|+|.+++.. .+....|--||||.||||||.|+++.+.+..+.+.+.+.+++||.........+ .+++|+||||||
T Consensus 123 FlvPvlE~L~r~-kWs~~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi-~~mNILVCTPGR 200 (758)
T KOG0343|consen 123 FLVPVLEALYRL-KWSPTDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERI-SQMNILVCTPGR 200 (758)
T ss_pred ehHHHHHHHHHc-CCCCCCCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhh-hcCCeEEechHH
Confidence 999999998764 344567888999999999999999999999999999999999998865544443 469999999999
Q ss_pred HHHHHHhc-cccccceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEEeccc-
Q 003910 359 LIDMLKMK-ALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEV- 436 (787)
Q Consensus 359 L~~~l~~~-~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~- 436 (787)
|+.++... .++...+.+|||||||+|++|||..++..|+..+++.+|+|+||||....+.+|++-.+.+|..|.+...
T Consensus 201 LLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a 280 (758)
T KOG0343|consen 201 LLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENA 280 (758)
T ss_pred HHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccc
Confidence 99998754 5677899999999999999999999999999999999999999999999999999999999999888633
Q ss_pred -ccccccceEEEEecCCCcchHHHHHHhcCCcCCCCCEEEEecccccHHHHHHHHHHc--CCceeeccCCCCHHHHHHHH
Q 003910 437 -GMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK--GFKAAALHGDKDQASRMEIL 513 (787)
Q Consensus 437 -~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~--g~~v~~lhg~~~~~eR~~~l 513 (787)
...+.++.|.+.+++. ..|+..|+..+...+ ..++|||+.+..++..++..+.+. |+++..|||.|+|..|..++
T Consensus 281 ~~atP~~L~Q~y~~v~l-~~Ki~~L~sFI~shl-k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~ 358 (758)
T KOG0343|consen 281 VAATPSNLQQSYVIVPL-EDKIDMLWSFIKSHL-KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVY 358 (758)
T ss_pred cccChhhhhheEEEEeh-hhHHHHHHHHHHhcc-ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHH
Confidence 4566778888888754 679999999888654 459999999999999999999875 89999999999999999999
Q ss_pred HHhhcCCccEEEEehhhhccCCCCCccEEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEccccHH
Q 003910 514 QKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEAR 581 (787)
Q Consensus 514 ~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~ 581 (787)
..|...+..||+||++++||||+|.|++||.||+|.++++|+||+||+.|.. ..|.+++++++.+..
T Consensus 359 ~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~-~~G~sll~L~psEeE 425 (758)
T KOG0343|consen 359 KKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYK-ERGESLLMLTPSEEE 425 (758)
T ss_pred HHHHHhcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhccc-CCCceEEEEcchhHH
Confidence 9999999999999999999999999999999999999999999999999998 679999999998843
No 25
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.4e-58 Score=487.15 Aligned_cols=365 Identities=36% Similarity=0.557 Sum_probs=314.7
Q ss_pred ccCCccccCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcC-cccccCCCCE
Q 003910 223 PVKTFEDCGFSTQLMHAISK-QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQ-PELQKEEGPI 300 (787)
Q Consensus 223 pi~sf~~~~l~~~l~~~l~~-~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~-~~~~~~~~p~ 300 (787)
.-..|..+||++.+...|.. +++..||.+|+++||.+++|+|+++.++||||||++|++|++++|... +.+.+..|+.
T Consensus 134 ts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ 213 (708)
T KOG0348|consen 134 TSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPY 213 (708)
T ss_pred ccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCce
Confidence 34579999999999999975 599999999999999999999999999999999999999999999875 4567788999
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhhc-CceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHh-ccccccceeEEEE
Q 003910 301 GVICAPTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM-KALTMSRVTYLVL 378 (787)
Q Consensus 301 vLIl~PtreLa~Qi~~~~~~~~~~~-~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~-~~~~l~~i~~lVi 378 (787)
+||||||||||.|+++.++++.+.+ .|-.+++.||..+......|..|++|+|+|||||++++.+ ..+.++++.||||
T Consensus 214 ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVl 293 (708)
T KOG0348|consen 214 ALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVL 293 (708)
T ss_pred EEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEe
Confidence 9999999999999999999998864 3556778999988888889999999999999999999986 5678899999999
Q ss_pred echhhhhcCCChHHHHHHhhhcC-------------CCceEEEEeccCcHHHHHHHHHHhCCCeEEEeccc---------
Q 003910 379 DEADRMFDLGFEPQIRSIVGQIR-------------PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEV--------- 436 (787)
Q Consensus 379 DEah~m~~~~f~~~i~~il~~~~-------------~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~--------- 436 (787)
||||+|+++||+..|..|++.+. +.+|.+++|||+...+..|+..-+.+|+.|.....
T Consensus 294 DEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~ 373 (708)
T KOG0348|consen 294 DEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDK 373 (708)
T ss_pred cchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchh
Confidence 99999999999999999987762 24799999999999999999999999998872111
Q ss_pred ----------------ccccccceEEEEecCCCcchHHHHHHhcCCc---CCCCCEEEEecccccHHHHHHHHHHc----
Q 003910 437 ----------------GMANEDITQVVHVIPSDAEKLPWLLEKLPGM---IDDGDVLVFASKKTTVDEIESQLAQK---- 493 (787)
Q Consensus 437 ----------------~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~---~~~~kvLVF~~s~~~a~~l~~~L~~~---- 493 (787)
...++.+.|.+.+++.. -++..|..+|... ....++|||+.+.+.++.-+..|...
T Consensus 374 a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpK-LRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~ 452 (708)
T KOG0348|consen 374 AVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPK-LRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSH 452 (708)
T ss_pred hhhhcCCcccccccccccCcHHhhhceEecCCc-hhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcc
Confidence 12234556777777643 3445555544432 23458999999999999888877652
Q ss_pred ------------------CCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEEEecCCCCHHHHH
Q 003910 494 ------------------GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHV 555 (787)
Q Consensus 494 ------------------g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~~d~p~s~~~y~ 555 (787)
+.++..|||+|+|.+|..++..|...+..||+||||++||||+|.|.+||.||+|.++.+|+
T Consensus 453 ~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adyl 532 (708)
T KOG0348|consen 453 LEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYL 532 (708)
T ss_pred cccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHH
Confidence 45689999999999999999999999989999999999999999999999999999999999
Q ss_pred HHhhccCCCCCCCcEEEEEEccccHHHHHHHHHH
Q 003910 556 HRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNS 589 (787)
Q Consensus 556 QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~ 589 (787)
||+|||.|+| ..|.++.|+.+.+..++..|...
T Consensus 533 HRvGRTARaG-~kG~alLfL~P~Eaey~~~l~~~ 565 (708)
T KOG0348|consen 533 HRVGRTARAG-EKGEALLFLLPSEAEYVNYLKKH 565 (708)
T ss_pred HHhhhhhhcc-CCCceEEEecccHHHHHHHHHhh
Confidence 9999999999 67999999999999866555443
No 26
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.8e-57 Score=473.33 Aligned_cols=367 Identities=33% Similarity=0.532 Sum_probs=329.3
Q ss_pred CCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCccc-ccCCCCEEEE
Q 003910 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPEL-QKEEGPIGVI 303 (787)
Q Consensus 225 ~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~-~~~~~p~vLI 303 (787)
.+|++++|+++|++++.+.||.+||-+|..+||.++.|+|++..|.||||||++|+||+++.++..... ....+|.++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 689999999999999999999999999999999999999999999999999999999999999876554 4567899999
Q ss_pred EcCcHHHHHHHHHHHHHHhhhc--CceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhcc-ccccceeEEEEec
Q 003910 304 CAPTRELAHQIYLETKKFAKSH--GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKA-LTMSRVTYLVLDE 380 (787)
Q Consensus 304 l~PtreLa~Qi~~~~~~~~~~~--~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~-~~l~~i~~lViDE 380 (787)
|+||+|||+|++..+.++.... .++++-+....+.......|...++|||+||++|+.++.... ..+..++++|+||
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 9999999999999999986543 467777776777666667777889999999999999998776 6688999999999
Q ss_pred hhhhhcCCChHHHHHHhhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcchHHHH
Q 003910 381 ADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWL 460 (787)
Q Consensus 381 ah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L 460 (787)
||.|+..||+..+..+.+.+|+..|.++||||+..+++.|-..+|.+|+.+...+....+.+-.+.+.+..++.+|+..+
T Consensus 179 ADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflll 258 (569)
T KOG0346|consen 179 ADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLL 258 (569)
T ss_pred hhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHH
Confidence 99999999999999999999999999999999999999999999999999988777766555444444444588999988
Q ss_pred HHhcCCcCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEeh------------
Q 003910 461 LEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD------------ 528 (787)
Q Consensus 461 ~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~------------ 528 (787)
+.+|+-.+-.|++|||+|+...|.+|.-+|.+.|++.++|+|.|+.+.|..++++|+.|-++||||||
T Consensus 259 yallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~ 338 (569)
T KOG0346|consen 259 YALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEV 338 (569)
T ss_pred HHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccc
Confidence 88887666789999999999999999999999999999999999999999999999999999999999
Q ss_pred -----------------------hhhccCCCCCccEEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEccccHHHHHH
Q 003910 529 -----------------------VAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGE 585 (787)
Q Consensus 529 -----------------------v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~ 585 (787)
-++||||+.+|.+|||||+|.++..|+||+|||+|.+ ++|++++|+.+.+......
T Consensus 339 kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~-n~GtalSfv~P~e~~g~~~ 417 (569)
T KOG0346|consen 339 KGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGN-NKGTALSFVSPKEEFGKES 417 (569)
T ss_pred cccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCC-CCCceEEEecchHHhhhhH
Confidence 1358999999999999999999999999999999998 6899999999988775555
Q ss_pred HHHHHHH
Q 003910 586 LVNSLIA 592 (787)
Q Consensus 586 l~~~l~~ 592 (787)
|...+..
T Consensus 418 le~~~~d 424 (569)
T KOG0346|consen 418 LESILKD 424 (569)
T ss_pred HHHHHhh
Confidence 5555544
No 27
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.5e-55 Score=501.46 Aligned_cols=379 Identities=39% Similarity=0.586 Sum_probs=332.0
Q ss_pred CccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccc--cCCCC
Q 003910 222 RPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQ--KEEGP 299 (787)
Q Consensus 222 ~pi~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~--~~~~p 299 (787)
.....|.+++|++.+++.|.+.||..||++|.++|+.+++|+|+|++++||||||++|++|++..+...+... ....+
T Consensus 84 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~ 163 (475)
T PRK01297 84 EGKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEP 163 (475)
T ss_pred cCCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCc
Confidence 3456799999999999999999999999999999999999999999999999999999999999987654221 11257
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhc-CCcEEEeCHHHHHHHHHhccccccceeEEEE
Q 003910 300 IGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYLVL 378 (787)
Q Consensus 300 ~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~-~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lVi 378 (787)
++|||+||++||.|+++.++.+.+..++++..++||.....+...+.. .++|||+||++|++++......+.++++|||
T Consensus 164 ~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lVi 243 (475)
T PRK01297 164 RALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVL 243 (475)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEe
Confidence 899999999999999999999998889999999999888777777654 5899999999999998888888999999999
Q ss_pred echhhhhcCCChHHHHHHhhhcCC--CceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcch
Q 003910 379 DEADRMFDLGFEPQIRSIVGQIRP--DRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEK 456 (787)
Q Consensus 379 DEah~m~~~~f~~~i~~il~~~~~--~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k 456 (787)
||||++++++|...+..++..++. .+|++++|||++..+..++..++.+|..+.+.........+.+.+..+. ...|
T Consensus 244 DEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~k 322 (475)
T PRK01297 244 DEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVA-GSDK 322 (475)
T ss_pred chHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEec-chhH
Confidence 999999999999999999988854 6799999999999999999999999988877666655666777766554 3456
Q ss_pred HHHHHHhcCCcCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCC
Q 003910 457 LPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDI 536 (787)
Q Consensus 457 ~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDi 536 (787)
...|..++... ...++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+++|||||+++++||||
T Consensus 323 ~~~l~~ll~~~-~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi 401 (475)
T PRK01297 323 YKLLYNLVTQN-PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHI 401 (475)
T ss_pred HHHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcc
Confidence 66666666542 34589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEccccHHHHHHHHHHHHHcC-CC-ccHHHHH
Q 003910 537 KSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAG-QN-VSMELMD 603 (787)
Q Consensus 537 p~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~l~~~~-~~-vp~~l~~ 603 (787)
+++++||+|++|.++.+|+||+||+||.| +.|.+++|++..|..++..+.+.+.... .. .|.+|+.
T Consensus 402 ~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g-~~g~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T PRK01297 402 DGISHVINFTLPEDPDDYVHRIGRTGRAG-ASGVSISFAGEDDAFQLPEIEELLGRKISCEMPPAELLK 469 (475)
T ss_pred cCCCEEEEeCCCCCHHHHHHhhCccCCCC-CCceEEEEecHHHHHHHHHHHHHhCCCCcccCCcHHHhh
Confidence 99999999999999999999999999999 6799999999999888888877765443 23 3444443
No 28
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-56 Score=479.30 Aligned_cols=372 Identities=33% Similarity=0.517 Sum_probs=314.1
Q ss_pred CCCccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC-CCEEEEccCCCchhHHHHHHHHHHHhcCccc-----
Q 003910 220 VPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSG-RDIIGIAKTGSGKTAAFVLPMIVHIMDQPEL----- 293 (787)
Q Consensus 220 ~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~g-rdvii~a~TGsGKTla~llp~l~~l~~~~~~----- 293 (787)
.+..+.-|.+++||..++.+|...||..||+||...||.++.| .|+|+.|+||||||+||-|||+..+......
T Consensus 176 ~~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~ 255 (731)
T KOG0347|consen 176 SKVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELS 255 (731)
T ss_pred cccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhh
Confidence 3556788999999999999999999999999999999999999 7999999999999999999999955533211
Q ss_pred ---ccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccc--
Q 003910 294 ---QKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKAL-- 368 (787)
Q Consensus 294 ---~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~-- 368 (787)
.+...|.+||++||||||.|+...+..++..+++++..++||.....|-+-|...++|||+|||||+.++.....
T Consensus 256 ~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l 335 (731)
T KOG0347|consen 256 NTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHL 335 (731)
T ss_pred hHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhh
Confidence 112345699999999999999999999999999999999999999999888888999999999999999987654
Q ss_pred -cccceeEEEEechhhhhcCCChHHHHHHhhhcC-----CCceEEEEeccCcH---------------------HHHHHH
Q 003910 369 -TMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIR-----PDRQTLLFSATMPR---------------------KVEKLA 421 (787)
Q Consensus 369 -~l~~i~~lViDEah~m~~~~f~~~i~~il~~~~-----~~~q~ll~SAT~~~---------------------~v~~l~ 421 (787)
++..+.+|||||||||+..|+-..+..||..+. ..+|+++||||+.- .++.|+
T Consensus 336 ~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lm 415 (731)
T KOG0347|consen 336 GNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLM 415 (731)
T ss_pred hhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHH
Confidence 467889999999999999999889998887775 56899999999842 123333
Q ss_pred HHH--hCCCeEEEecccccccccceEEEEecCCCcchHHHHHHhcCCcCCCCCEEEEecccccHHHHHHHHHHcCCceee
Q 003910 422 REI--LSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAA 499 (787)
Q Consensus 422 ~~~--l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~ 499 (787)
..+ ...|..|.......+...+....+.|+ ...|..+|+=+|.. ..|++|||||+...+.+|+-+|+..+++...
T Consensus 416 k~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~-~~eKD~ylyYfl~r--yPGrTlVF~NsId~vKRLt~~L~~L~i~p~~ 492 (731)
T KOG0347|consen 416 KKIGFRGKPKIIDLTPQSATASTLTESLIECP-PLEKDLYLYYFLTR--YPGRTLVFCNSIDCVKRLTVLLNNLDIPPLP 492 (731)
T ss_pred HHhCccCCCeeEecCcchhHHHHHHHHhhcCC-ccccceeEEEEEee--cCCceEEEechHHHHHHHHHHHhhcCCCCch
Confidence 322 234655555444444444444333342 23343333333333 4789999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEcccc
Q 003910 500 LHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKE 579 (787)
Q Consensus 500 lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d 579 (787)
||..|.|.+|.+.+++|++....|||||||++||||||+|.|||+|-.|.+.+.|+||.|||.|++ ..|+.++|+.|.+
T Consensus 493 LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~-~~Gvsvml~~P~e 571 (731)
T KOG0347|consen 493 LHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARAN-SEGVSVMLCGPQE 571 (731)
T ss_pred hhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEeccccccccc-CCCeEEEEeChHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 6799999999999
Q ss_pred HHHHHHHHHHHHHcCC
Q 003910 580 ARFAGELVNSLIAAGQ 595 (787)
Q Consensus 580 ~~~~~~l~~~l~~~~~ 595 (787)
...+..|.+-|.....
T Consensus 572 ~~~~~KL~ktL~k~~d 587 (731)
T KOG0347|consen 572 VGPLKKLCKTLKKKED 587 (731)
T ss_pred hHHHHHHHHHHhhccC
Confidence 9999999999976553
No 29
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=4.4e-54 Score=483.42 Aligned_cols=369 Identities=33% Similarity=0.547 Sum_probs=327.5
Q ss_pred cCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEE
Q 003910 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI 303 (787)
Q Consensus 224 i~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLI 303 (787)
+.+|.++++++.+++.|.+.+|..|+|+|.++|+.+++++|+++++|||+|||++|++|++.++... ..++++||
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~-----~~~~~~li 101 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD-----LNACQALI 101 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC-----CCCceEEE
Confidence 5789999999999999999999999999999999999999999999999999999999999887432 24678999
Q ss_pred EcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhh
Q 003910 304 CAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR 383 (787)
Q Consensus 304 l~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~ 383 (787)
|+||++|+.|+.+.+..++....+.+..++|+.....++..+..+++|+|+||++|.+++....+.+.++++|||||||+
T Consensus 102 l~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~ 181 (401)
T PTZ00424 102 LAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADE 181 (401)
T ss_pred ECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHH
Confidence 99999999999999999988778888889999888888888888899999999999999988888899999999999999
Q ss_pred hhcCCChHHHHHHhhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcchHHHHHHh
Q 003910 384 MFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEK 463 (787)
Q Consensus 384 m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~ 463 (787)
+.+.+|...+..++..+++..|++++|||+|+.+..+...++.+|..+.+.........+.+.+..+.....+...+..+
T Consensus 182 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 261 (401)
T PTZ00424 182 MLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCDL 261 (401)
T ss_pred HHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988776655555566667666665444455555554
Q ss_pred cCCcCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEE
Q 003910 464 LPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVV 543 (787)
Q Consensus 464 L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI 543 (787)
+.. ....++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||
T Consensus 262 ~~~-~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI 340 (401)
T PTZ00424 262 YET-LTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVI 340 (401)
T ss_pred HHh-cCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEE
Confidence 443 2346899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHHhhccCCCCCCCcEEEEEEccccHHHHHHHHHHHHHcCCCccH
Q 003910 544 NFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSM 599 (787)
Q Consensus 544 ~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~l~~~~~~vp~ 599 (787)
+||+|.+...|+||+||+||.| +.|.|++|+++.+...+..+.+.+.....+.++
T Consensus 341 ~~~~p~s~~~y~qr~GRagR~g-~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~~ 395 (401)
T PTZ00424 341 NYDLPASPENYIHRIGRSGRFG-RKGVAINFVTPDDIEQLKEIERHYNTQIEEMPM 395 (401)
T ss_pred EECCCCCHHHEeecccccccCC-CCceEEEEEcHHHHHHHHHHHHHHCCcccccCc
Confidence 9999999999999999999999 679999999999998888877766544444443
No 30
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.5e-55 Score=475.74 Aligned_cols=401 Identities=33% Similarity=0.527 Sum_probs=358.7
Q ss_pred HHHHHHHcCceeccCCCCCccCCccc----cCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHH
Q 003910 204 VMEYKKSLAIRVSGFDVPRPVKTFED----CGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAF 279 (787)
Q Consensus 204 ~~~~~~~~~i~v~g~~~P~pi~sf~~----~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~ 279 (787)
....|+.+.+.+.|..+|+|+.+|.+ +.....+++++...+|..|+|+|++|+|.++.+++++.|+|||+|||++|
T Consensus 111 ~~~~Rk~~k~~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf 190 (593)
T KOG0344|consen 111 LLGIRKSNKINVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAF 190 (593)
T ss_pred cccchhcceeeccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhh
Confidence 45567888999999999999999998 57889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHh--hhcCceEEEEECCCChHH-HHHHHhcCCcEEEeCH
Q 003910 280 VLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA--KSHGIRVSAVYGGMSKLD-QFKELKAGCEIVIATP 356 (787)
Q Consensus 280 llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~--~~~~i~v~~~~gg~~~~~-~~~~l~~~~dIIV~Tp 356 (787)
++|++.+|.....-....|-+++|+.|||+||.|++.++.++. ...++++..+.......+ ........++|+|.||
T Consensus 191 ~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP 270 (593)
T KOG0344|consen 191 NLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTP 270 (593)
T ss_pred hhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCH
Confidence 9999999976543223457789999999999999999999998 555555544433322211 1111223489999999
Q ss_pred HHHHHHHHhcc--ccccceeEEEEechhhhhcC-CChHHHHHHhhhcC-CCceEEEEeccCcHHHHHHHHHHhCCCeEEE
Q 003910 357 GRLIDMLKMKA--LTMSRVTYLVLDEADRMFDL-GFEPQIRSIVGQIR-PDRQTLLFSATMPRKVEKLAREILSDPVRVT 432 (787)
Q Consensus 357 ~~L~~~l~~~~--~~l~~i~~lViDEah~m~~~-~f~~~i~~il~~~~-~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~ 432 (787)
-+|..++.... +.+..+.++|+||||++++. .|..|+..|+..+. ++..+-+||||++..+++++.....++..+.
T Consensus 271 ~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vi 350 (593)
T KOG0344|consen 271 MRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVI 350 (593)
T ss_pred HHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEE
Confidence 99999998765 67899999999999999998 89999999988775 5677889999999999999999999999999
Q ss_pred ecccccccccceEEEEecCCCcchHHHHHHhcCCcCCCCCEEEEecccccHHHHHHHH-HHcCCceeeccCCCCHHHHHH
Q 003910 433 VGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQL-AQKGFKAAALHGDKDQASRME 511 (787)
Q Consensus 433 v~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L-~~~g~~v~~lhg~~~~~eR~~ 511 (787)
++........|.|....+.+...|+..+.+++.... ..++|||+++++.|..|...| .-.++.+.+|||..++.+|+.
T Consensus 351 vg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g~-~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde 429 (593)
T KOG0344|consen 351 VGLRNSANETVDQELVFCGSEKGKLLALRQLVASGF-KPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDE 429 (593)
T ss_pred EecchhHhhhhhhhheeeecchhHHHHHHHHHhccC-CCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHH
Confidence 999999999999999999999999999999888763 459999999999999999999 677899999999999999999
Q ss_pred HHHHhhcCCccEEEEehhhhccCCCCCccEEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEccccHHHHHHHHHHHH
Q 003910 512 ILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLI 591 (787)
Q Consensus 512 ~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~l~ 591 (787)
++++|+.|+++|||||++++||+|+.++++|||||.|.+...|+|||||+||+| +.|.||+|++..|...++.+.+.++
T Consensus 430 ~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag-~~g~Aitfytd~d~~~ir~iae~~~ 508 (593)
T KOG0344|consen 430 TMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAG-RSGKAITFYTDQDMPRIRSIAEVME 508 (593)
T ss_pred HHHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCC-CCcceEEEeccccchhhhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 7899999999999999999999999
Q ss_pred HcCCCccHHHHHHHH
Q 003910 592 AAGQNVSMELMDLAM 606 (787)
Q Consensus 592 ~~~~~vp~~l~~~a~ 606 (787)
+.|.+||.+++.+..
T Consensus 509 ~sG~evpe~~m~~~k 523 (593)
T KOG0344|consen 509 QSGCEVPEKIMGIKK 523 (593)
T ss_pred HcCCcchHHHHhhhh
Confidence 999999999998875
No 31
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-52 Score=430.53 Aligned_cols=361 Identities=32% Similarity=0.516 Sum_probs=324.3
Q ss_pred CccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC--CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCC
Q 003910 222 RPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGP 299 (787)
Q Consensus 222 ~pi~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~g--rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p 299 (787)
..+++|+++.|+|+|++.|..++|.+|+.||..++|.++.. +++|.++..|+|||.+|.|.||..+--. ..-|
T Consensus 87 yS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~-----~~~P 161 (477)
T KOG0332|consen 87 YSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD-----VVVP 161 (477)
T ss_pred cccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc-----ccCC
Confidence 45789999999999999999999999999999999999987 7999999999999999999999987332 2368
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHh-ccccccceeEEEE
Q 003910 300 IGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM-KALTMSRVTYLVL 378 (787)
Q Consensus 300 ~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~-~~~~l~~i~~lVi 378 (787)
.++.|+|||+||.|+.+.+.+..+..++++.+.+-+.....- ..+ ..+|+|+||+.+.+++.+ ..+.+..+.++|+
T Consensus 162 Q~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG-~~i--~eqIviGTPGtv~Dlm~klk~id~~kikvfVl 238 (477)
T KOG0332|consen 162 QCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRG-NKL--TEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVL 238 (477)
T ss_pred CceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccC-Ccc--hhheeeCCCccHHHHHHHHHhhChhhceEEEe
Confidence 899999999999999999999998888888887776521110 011 268999999999999987 7888999999999
Q ss_pred echhhhhc-CCChHHHHHHhhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcchH
Q 003910 379 DEADRMFD-LGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKL 457 (787)
Q Consensus 379 DEah~m~~-~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~ 457 (787)
||||.|++ .||.++-..|...++++.|+|+||||+...+..++..++.++..+.+.........|.|.+..|.....|+
T Consensus 239 DEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~ 318 (477)
T KOG0332|consen 239 DEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDDKY 318 (477)
T ss_pred cchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhhHH
Confidence 99999987 57999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCC
Q 003910 458 PWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIK 537 (787)
Q Consensus 458 ~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip 537 (787)
..|.+ |.....-++.||||.++..+..|+..|...|+.|.++||+|...+|..++++|+.|..+|||+|++++||+|++
T Consensus 319 ~~l~~-lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~ 397 (477)
T KOG0332|consen 319 QALVN-LYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVA 397 (477)
T ss_pred HHHHH-HHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccc
Confidence 99988 55566778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEecCCC------CHHHHHHHhhccCCCCCCCcEEEEEEcccc-HHHHHHHHHHHHH
Q 003910 538 SIKSVVNFDIAR------DMDMHVHRIGRTGRAGDKDGTAYTLVTQKE-ARFAGELVNSLIA 592 (787)
Q Consensus 538 ~v~~VI~~d~p~------s~~~y~QriGR~gR~G~~~G~~i~l~~~~d-~~~~~~l~~~l~~ 592 (787)
.|++|||||+|. ++++|+||||||||.| +.|.++.|+...+ ...+..|.+++..
T Consensus 398 qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFG-kkG~a~n~v~~~~s~~~mn~iq~~F~~ 458 (477)
T KOG0332|consen 398 QVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFG-KKGLAINLVDDKDSMNIMNKIQKHFNM 458 (477)
T ss_pred eEEEEEecCCccccCCCCCHHHHHHHhccccccc-ccceEEEeecccCcHHHHHHHHHHHhh
Confidence 999999999996 6899999999999999 7899999997654 5555566666643
No 32
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-53 Score=444.30 Aligned_cols=361 Identities=38% Similarity=0.599 Sum_probs=336.5
Q ss_pred cCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEE
Q 003910 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI 303 (787)
Q Consensus 224 i~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLI 303 (787)
--.|..+||+..++++|.+.||..|||+|+..||.++.++|++..+.||||||.+|++||+.++.... ..|-++||
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s----~~g~Rali 95 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS----QTGLRALI 95 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc----ccccceee
Confidence 46799999999999999999999999999999999999999999999999999999999999986542 45778999
Q ss_pred EcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhh
Q 003910 304 CAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR 383 (787)
Q Consensus 304 l~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~ 383 (787)
+.|||+||.|..+.++.+...+++++++++||....+|+..|..++|||++||++++.+.-.-.+.|+.+.|||+||||+
T Consensus 96 lsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadr 175 (529)
T KOG0337|consen 96 LSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADR 175 (529)
T ss_pred ccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhH
Confidence 99999999999999999999999999999999999999999999999999999999988766678899999999999999
Q ss_pred hhcCCChHHHHHHhhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcchHHHHHHh
Q 003910 384 MFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEK 463 (787)
Q Consensus 384 m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~ 463 (787)
|+.+||.+++.+++..++..+|+++||||+|+.+.++++.-+.+|+.+.+.-.....+.+...+..+ ...+|...|+.+
T Consensus 176 lfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~-~~a~K~aaLl~i 254 (529)
T KOG0337|consen 176 LFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRV-RKAEKEAALLSI 254 (529)
T ss_pred HHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeee-ccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998766666666666666666 456899999999
Q ss_pred cCCcCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEE
Q 003910 464 LPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVV 543 (787)
Q Consensus 464 L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI 543 (787)
+.....+.+++|||.++.+++.+...|...++.+..++|.|++..|...+..|..++..+||.|++++||+|||..+.||
T Consensus 255 l~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvi 334 (529)
T KOG0337|consen 255 LGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVI 334 (529)
T ss_pred HhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccc
Confidence 98887788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHHhhccCCCCCCCcEEEEEEccccHHHHHHHHHHH
Q 003910 544 NFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSL 590 (787)
Q Consensus 544 ~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~l 590 (787)
|||+|.....|+||+||+.|+| ..|++|.|+.+++..++-+|-..|
T Consensus 335 nyd~p~~~klFvhRVgr~arag-rtg~aYs~V~~~~~~yl~DL~lfl 380 (529)
T KOG0337|consen 335 NYDFPPDDKLFVHRVGRVARAG-RTGRAYSLVASTDDPYLLDLQLFL 380 (529)
T ss_pred cccCCCCCceEEEEecchhhcc-ccceEEEEEecccchhhhhhhhhc
Confidence 9999999999999999999999 689999999999988877776554
No 33
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-52 Score=434.10 Aligned_cols=367 Identities=33% Similarity=0.547 Sum_probs=336.3
Q ss_pred cCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEE
Q 003910 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI 303 (787)
Q Consensus 224 i~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLI 303 (787)
+.+|++++|++.|++.|...||.+|+.||+.||..+..|+|+++.+++|+|||.+|++++++++-- ...-..+|+
T Consensus 25 vdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~-----~~ke~qali 99 (397)
T KOG0327|consen 25 VDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDM-----SVKETQALI 99 (397)
T ss_pred hhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCc-----chHHHHHHH
Confidence 458999999999999999999999999999999999999999999999999999999999998721 123456899
Q ss_pred EcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhc-CCcEEEeCHHHHHHHHHhccccccceeEEEEechh
Q 003910 304 CAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD 382 (787)
Q Consensus 304 l~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~-~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah 382 (787)
++|||+||.|+......+....++++..+.||.....+...+.. .++|+|+||+++.+++....+....++++|+||||
T Consensus 100 laPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaD 179 (397)
T KOG0327|consen 100 LAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEAD 179 (397)
T ss_pred hcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchH
Confidence 99999999999999999998889999999999988866655554 58999999999999999888888889999999999
Q ss_pred hhhcCCChHHHHHHhhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcchHHHHHH
Q 003910 383 RMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLE 462 (787)
Q Consensus 383 ~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L~~ 462 (787)
.|+..+|..++..|+.+++++.|++++|||+|..+..+.+.|+.+|+.+.+.....+.+.|.|.+..+..+. |+..|..
T Consensus 180 EmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~-k~~~l~d 258 (397)
T KOG0327|consen 180 EMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEE-KLDTLCD 258 (397)
T ss_pred hhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccc-cccHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999988886554 8888887
Q ss_pred hcCCcCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEE
Q 003910 463 KLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSV 542 (787)
Q Consensus 463 ~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~V 542 (787)
+.. .-.+.+||||+++.++.|...|...++.+..+||+|.+.+|..++..|+.|..+|||+|+.++||+|+..+..|
T Consensus 259 l~~---~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slv 335 (397)
T KOG0327|consen 259 LYR---RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLV 335 (397)
T ss_pred HHH---hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhccee
Confidence 776 45689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEccccHHHHHHHHHHHHHcCCCccHH
Q 003910 543 VNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSME 600 (787)
Q Consensus 543 I~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~l~~~~~~vp~~ 600 (787)
|||++|.+.++|+||+||+||.| ++|.++.+++..|...+.++.+.+.-.-.++|..
T Consensus 336 inydlP~~~~~yihR~gr~gr~g-rkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~ 392 (397)
T KOG0327|consen 336 VNYDLPARKENYIHRIGRAGRFG-RKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSN 392 (397)
T ss_pred eeeccccchhhhhhhcccccccC-CCceeeeeehHhhHHHHHhHHHhcCCcceecccc
Confidence 99999999999999999999999 6899999999999999988887664444444443
No 34
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=4.7e-51 Score=441.85 Aligned_cols=357 Identities=31% Similarity=0.460 Sum_probs=323.8
Q ss_pred ccCCCCCccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCccccc
Q 003910 216 SGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQK 295 (787)
Q Consensus 216 ~g~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~ 295 (787)
.+.-.|.-...|+++-|...++..|+..+|..||++|..|||.++.+.|+|+++..|+|||++|.+.++..+.-.
T Consensus 16 s~DV~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~----- 90 (980)
T KOG4284|consen 16 SIDVQSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSR----- 90 (980)
T ss_pred ccccccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcc-----
Confidence 344557778899999999999999999999999999999999999999999999999999999998888776332
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHHHhhh-cCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhcccccccee
Q 003910 296 EEGPIGVICAPTRELAHQIYLETKKFAKS-HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVT 374 (787)
Q Consensus 296 ~~~p~vLIl~PtreLa~Qi~~~~~~~~~~-~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~ 374 (787)
...+.+|||+|||++|.||.+.+.+++.. .|+++.+++||.........|+. ++|+|+|||||..+++...++.+.+.
T Consensus 91 ~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~-~rIvIGtPGRi~qL~el~~~n~s~vr 169 (980)
T KOG4284|consen 91 SSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQ-TRIVIGTPGRIAQLVELGAMNMSHVR 169 (980)
T ss_pred cCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhh-ceEEecCchHHHHHHHhcCCCcccee
Confidence 45688999999999999999999999874 48999999999998877777664 89999999999999999999999999
Q ss_pred EEEEechhhhhc-CCChHHHHHHhhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCC
Q 003910 375 YLVLDEADRMFD-LGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSD 453 (787)
Q Consensus 375 ~lViDEah~m~~-~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~ 453 (787)
++||||||.|++ ..|..+|..|++.++..+|++.||||.|..+..++.+||.+|.++.........-.|.|.+..++..
T Consensus 170 lfVLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~ 249 (980)
T KOG4284|consen 170 LFVLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSP 249 (980)
T ss_pred EEEeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCC
Confidence 999999999998 5699999999999999999999999999999999999999999999988888888999998888765
Q ss_pred cc-------hHHHHHHhcCCcCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEE
Q 003910 454 AE-------KLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIA 526 (787)
Q Consensus 454 ~~-------k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVa 526 (787)
.. |+..|..++... +-.+.||||+....|+-++.+|...|+.|.+|.|.|+|.+|..+++.++.=.++|||+
T Consensus 250 nnsveemrlklq~L~~vf~~i-py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVs 328 (980)
T KOG4284|consen 250 NNSVEEMRLKLQKLTHVFKSI-PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVS 328 (980)
T ss_pred cchHHHHHHHHHHHHHHHhhC-chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEe
Confidence 32 445555555443 3458999999999999999999999999999999999999999999999999999999
Q ss_pred ehhhhccCCCCCccEEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEccccH
Q 003910 527 TDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (787)
Q Consensus 527 T~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~ 580 (787)
||+.+||||-++|++|||.|+|.+.++|.|||||+||.| ..|.+++|++....
T Consensus 329 TDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG-~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 329 TDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFG-AHGAAVTLLEDERE 381 (980)
T ss_pred cchhhccCCccccceEEecCCCcchHHHHHHhhhccccc-ccceeEEEeccchh
Confidence 999999999999999999999999999999999999999 56999999987644
No 35
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=4.4e-48 Score=459.14 Aligned_cols=344 Identities=19% Similarity=0.275 Sum_probs=273.2
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHH
Q 003910 231 GFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTREL 310 (787)
Q Consensus 231 ~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreL 310 (787)
.|++.+.+.|.+.||.+||++|.++|+.+++|+|+|+++|||||||++|++|+|..+... .++++|||+||++|
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~------~~~~aL~l~PtraL 93 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD------PRATALYLAPTKAL 93 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC------CCcEEEEEcChHHH
Confidence 488999999999999999999999999999999999999999999999999999998653 35789999999999
Q ss_pred HHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhc----cccccceeEEEEechhhhhc
Q 003910 311 AHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK----ALTMSRVTYLVLDEADRMFD 386 (787)
Q Consensus 311 a~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~----~~~l~~i~~lViDEah~m~~ 386 (787)
|.|+...++++. ..++++..+.|+.+ ..+...+..+++|||+||++|...+... ...++++++|||||||+|.+
T Consensus 94 a~q~~~~l~~l~-~~~i~v~~~~Gdt~-~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g 171 (742)
T TIGR03817 94 AADQLRAVRELT-LRGVRPATYDGDTP-TEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG 171 (742)
T ss_pred HHHHHHHHHHhc-cCCeEEEEEeCCCC-HHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC
Confidence 999999999997 34788877766665 4455667778999999999997543221 12378999999999999976
Q ss_pred CCChHHHHHHhhhc-------CCCceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCC-------
Q 003910 387 LGFEPQIRSIVGQI-------RPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPS------- 452 (787)
Q Consensus 387 ~~f~~~i~~il~~~-------~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~------- 452 (787)
. |...+..++..+ ..++|++++|||+++..+ ++.+++..|..+. ......... .+...+.+.
T Consensus 172 ~-fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~i-~~~~~~~~~-~~~~~~~p~~~~~~~~ 247 (742)
T TIGR03817 172 V-FGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVAV-TEDGSPRGA-RTVALWEPPLTELTGE 247 (742)
T ss_pred c-cHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEEE-CCCCCCcCc-eEEEEecCCccccccc
Confidence 3 776655555443 467899999999998754 6788888886543 222221111 222211111
Q ss_pred ---------CcchHHHHHHhcCCcCCCCCEEEEecccccHHHHHHHHHHc--------CCceeeccCCCCHHHHHHHHHH
Q 003910 453 ---------DAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK--------GFKAAALHGDKDQASRMEILQK 515 (787)
Q Consensus 453 ---------~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~--------g~~v~~lhg~~~~~eR~~~l~~ 515 (787)
...+...|..++. ...++||||+++..++.++..|... +..+..+||++++.+|..+++.
T Consensus 248 ~~~~~r~~~~~~~~~~l~~l~~---~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~ 324 (742)
T TIGR03817 248 NGAPVRRSASAEAADLLADLVA---EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERA 324 (742)
T ss_pred cccccccchHHHHHHHHHHHHH---CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHH
Confidence 0123334444443 2569999999999999999998764 5688999999999999999999
Q ss_pred hhcCCccEEEEehhhhccCCCCCccEEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEcc--ccHHHHHHHHHHH
Q 003910 516 FKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ--KEARFAGELVNSL 590 (787)
Q Consensus 516 F~~G~~~VLVaT~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~--~d~~~~~~l~~~l 590 (787)
|++|++++||||+++++||||+++++||||++|.++..|+||+|||||.| +.|.+++++.. .|..++..+.+.+
T Consensus 325 f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G-~~g~ai~v~~~~~~d~~~~~~~~~~~ 400 (742)
T TIGR03817 325 LRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRG-QGALVVLVARDDPLDTYLVHHPEALF 400 (742)
T ss_pred HHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCC-CCcEEEEEeCCChHHHHHHhCHHHHh
Confidence 99999999999999999999999999999999999999999999999999 67999988863 3444444443343
No 36
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.7e-49 Score=415.25 Aligned_cols=352 Identities=30% Similarity=0.471 Sum_probs=286.5
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHH---------cCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEE
Q 003910 234 TQLMHAISKQGYEKPTSIQCQALPIIL---------SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC 304 (787)
Q Consensus 234 ~~l~~~l~~~g~~~ptp~Q~~ai~~il---------~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl 304 (787)
..+.+.|.++++....|+|.+.+||++ ..+|+++.||||||||++|.||+++.+...+ -+.-++|||
T Consensus 146 a~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~----v~~LRavVi 221 (620)
T KOG0350|consen 146 ATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRP----VKRLRAVVI 221 (620)
T ss_pred HHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCC----ccceEEEEE
Confidence 445677999999999999999999996 2589999999999999999999999886653 234679999
Q ss_pred cCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhcC-----CcEEEeCHHHHHHHHH-hccccccceeEEEE
Q 003910 305 APTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAG-----CEIVIATPGRLIDMLK-MKALTMSRVTYLVL 378 (787)
Q Consensus 305 ~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~-----~dIIV~Tp~~L~~~l~-~~~~~l~~i~~lVi 378 (787)
+||++|+.|++..|.+|+...++.|+.+.|..+.......|... .||+|+||+||++++. ...+.|.++.|+||
T Consensus 222 vPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVI 301 (620)
T KOG0350|consen 222 VPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVI 301 (620)
T ss_pred eeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEe
Confidence 99999999999999999999999988888887777776666543 4999999999999998 47789999999999
Q ss_pred echhhhhcCCChHHHHHHhhhcC----------------------------------CCceEEEEeccCcHHHHHHHHHH
Q 003910 379 DEADRMFDLGFEPQIRSIVGQIR----------------------------------PDRQTLLFSATMPRKVEKLAREI 424 (787)
Q Consensus 379 DEah~m~~~~f~~~i~~il~~~~----------------------------------~~~q~ll~SAT~~~~v~~l~~~~ 424 (787)
||||||++..|...+-.++..+. +..+.+++|||+...-..+..--
T Consensus 302 DEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~ 381 (620)
T KOG0350|consen 302 DEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLT 381 (620)
T ss_pred chHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhh
Confidence 99999998665544443332221 22357889999877777777777
Q ss_pred hCCCeEEEecc----cccccccceEEEEecCCCcchHHHHHHhcCCcCCCCCEEEEecccccHHHHHHHHH----HcCCc
Q 003910 425 LSDPVRVTVGE----VGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLA----QKGFK 496 (787)
Q Consensus 425 l~~p~~i~v~~----~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~----~~g~~ 496 (787)
+..|....+.. ....+..+.+....+ ....|...+..++... .-.++|+|+++...+.+++..|+ ...++
T Consensus 382 l~~Prl~~v~~~~~~ryslp~~l~~~~vv~-~~~~kpl~~~~lI~~~-k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~ 459 (620)
T KOG0350|consen 382 LHIPRLFHVSKPLIGRYSLPSSLSHRLVVT-EPKFKPLAVYALITSN-KLNRTLCFVNSVSSANRLAHVLKVEFCSDNFK 459 (620)
T ss_pred cCCCceEEeecccceeeecChhhhhceeec-ccccchHhHHHHHHHh-hcceEEEEecchHHHHHHHHHHHHHhccccch
Confidence 78885554432 122233333333333 3334555566655543 34589999999999999999987 23577
Q ss_pred eeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEc
Q 003910 497 AAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVT 576 (787)
Q Consensus 497 v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~ 576 (787)
+..+.|.++...|...+++|+.|.++||||+|+++||+|+.+++.|||||+|.+...|+||+|||+|+| +.|.||+++.
T Consensus 460 ~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAg-q~G~a~tll~ 538 (620)
T KOG0350|consen 460 VSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAG-QDGYAITLLD 538 (620)
T ss_pred hhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhccccccc-CCceEEEeec
Confidence 888999999999999999999999999999999999999999999999999999999999999999999 6799999999
Q ss_pred cccHHHHHHHHHHHHH
Q 003910 577 QKEARFAGELVNSLIA 592 (787)
Q Consensus 577 ~~d~~~~~~l~~~l~~ 592 (787)
..+.+.+.++++....
T Consensus 539 ~~~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 539 KHEKRLFSKLLKKTNL 554 (620)
T ss_pred cccchHHHHHHHHhcc
Confidence 9999888877776544
No 37
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=2.4e-46 Score=440.56 Aligned_cols=344 Identities=18% Similarity=0.284 Sum_probs=268.8
Q ss_pred Cccc--cCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEE
Q 003910 226 TFED--CGFSTQLMHAISK-QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV 302 (787)
Q Consensus 226 sf~~--~~l~~~l~~~l~~-~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vL 302 (787)
.|.. +.....+...+++ .||..++|+|.++|+.++.|+|+|+++|||+|||++|++|+|.. ++.+|
T Consensus 436 ~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~-----------~GiTL 504 (1195)
T PLN03137 436 KWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC-----------PGITL 504 (1195)
T ss_pred cccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc-----------CCcEE
Confidence 4654 4455566666655 48999999999999999999999999999999999999999853 35699
Q ss_pred EEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHh------cCCcEEEeCHHHHHH--HHHhc--cc-ccc
Q 003910 303 ICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELK------AGCEIVIATPGRLID--MLKMK--AL-TMS 371 (787)
Q Consensus 303 Il~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~------~~~dIIV~Tp~~L~~--~l~~~--~~-~l~ 371 (787)
||+|+++|+.+++..+.. .++.+.++.++....++...+. ..++|||+||++|.. .+... .+ ...
T Consensus 505 VISPLiSLmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~ 580 (1195)
T PLN03137 505 VISPLVSLIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRG 580 (1195)
T ss_pred EEeCHHHHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhcc
Confidence 999999999866555544 3899999999988766544332 358999999999863 22211 11 234
Q ss_pred ceeEEEEechhhhhcCC--ChHHHHHH--hhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEE
Q 003910 372 RVTYLVLDEADRMFDLG--FEPQIRSI--VGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVV 447 (787)
Q Consensus 372 ~i~~lViDEah~m~~~~--f~~~i~~i--l~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~ 447 (787)
.+.+|||||||+|.+|| |.+.+..+ +....+..++++||||++..+...+...+.....+... ......++..
T Consensus 581 ~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr-~Sf~RpNL~y-- 657 (1195)
T PLN03137 581 LLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFR-QSFNRPNLWY-- 657 (1195)
T ss_pred ccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEee-cccCccceEE--
Confidence 58899999999999998 66766653 44455678999999999998887666665432222111 1122233322
Q ss_pred EecCCCcchHHHHHHhcCCcCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEe
Q 003910 448 HVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIAT 527 (787)
Q Consensus 448 ~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT 527 (787)
.++.........+..++.........||||.++..|+.|+..|...|+.+..+||+|++.+|..+++.|..|+++|||||
T Consensus 658 ~Vv~k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVAT 737 (1195)
T PLN03137 658 SVVPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICAT 737 (1195)
T ss_pred EEeccchhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEe
Confidence 33332222234555555544345689999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCCccEEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEccccHHHHHHHHH
Q 003910 528 DVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVN 588 (787)
Q Consensus 528 ~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~ 588 (787)
+++++|||+|+|++||||++|.+++.|+||+|||||.| ..+.|++|++..|...+..++.
T Consensus 738 dAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG-~~g~cILlys~~D~~~~~~lI~ 797 (1195)
T PLN03137 738 VAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDG-QRSSCVLYYSYSDYIRVKHMIS 797 (1195)
T ss_pred chhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCC-CCceEEEEecHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999 6899999999888776666653
No 38
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.6e-45 Score=420.40 Aligned_cols=327 Identities=20% Similarity=0.322 Sum_probs=259.8
Q ss_pred HCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003910 242 KQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (787)
Q Consensus 242 ~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~ 321 (787)
..||..|+|+|.++|+.+++++|+++++|||+|||++|++|++.. ++.+|||+||++|+.|++..+..+
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~-----------~~~~lVi~P~~~L~~dq~~~l~~~ 74 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS-----------DGITLVISPLISLMEDQVLQLKAS 74 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc-----------CCcEEEEecHHHHHHHHHHHHHHc
Confidence 358999999999999999999999999999999999999998752 346899999999999998888764
Q ss_pred hhhcCceEEEEECCCChHHHH---HHHhc-CCcEEEeCHHHHHHHHH-hccc-cccceeEEEEechhhhhcCC--ChHHH
Q 003910 322 AKSHGIRVSAVYGGMSKLDQF---KELKA-GCEIVIATPGRLIDMLK-MKAL-TMSRVTYLVLDEADRMFDLG--FEPQI 393 (787)
Q Consensus 322 ~~~~~i~v~~~~gg~~~~~~~---~~l~~-~~dIIV~Tp~~L~~~l~-~~~~-~l~~i~~lViDEah~m~~~~--f~~~i 393 (787)
++.+..+.++....++. ..+.. ..+||++||++|..... ...+ .+..+.+|||||||++.+|+ |.+.+
T Consensus 75 ----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~ 150 (470)
T TIGR00614 75 ----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDY 150 (470)
T ss_pred ----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHH
Confidence 78888887776654332 22333 48999999999854221 1122 46789999999999999987 56665
Q ss_pred HHH--hhhcCCCceEEEEeccCcHHHHHHHHHHhC--CCeEEEecccccccccceEEEEecCCCcchHHHHHHhcCCcCC
Q 003910 394 RSI--VGQIRPDRQTLLFSATMPRKVEKLAREILS--DPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMID 469 (787)
Q Consensus 394 ~~i--l~~~~~~~q~ll~SAT~~~~v~~l~~~~l~--~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~ 469 (787)
..+ +....++.++++||||+++.+...+...+. +|..+... ....++...+ ..........+...+.....
T Consensus 151 ~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s---~~r~nl~~~v--~~~~~~~~~~l~~~l~~~~~ 225 (470)
T TIGR00614 151 KALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTS---FDRPNLYYEV--RRKTPKILEDLLRFIRKEFK 225 (470)
T ss_pred HHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCC---CCCCCcEEEE--EeCCccHHHHHHHHHHHhcC
Confidence 543 333346789999999999988766655543 44433321 1222332222 22222345556666654334
Q ss_pred CCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEEEecCCC
Q 003910 470 DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIAR 549 (787)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~~d~p~ 549 (787)
...+||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+|++||+|++|.
T Consensus 226 ~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~ 305 (470)
T TIGR00614 226 GKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPK 305 (470)
T ss_pred CCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCC
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHhhccCCCCCCCcEEEEEEccccHHHHHHHHHH
Q 003910 550 DMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNS 589 (787)
Q Consensus 550 s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~ 589 (787)
++..|+||+||+||.| ..|.|++|+++.|...+..++..
T Consensus 306 s~~~y~Qr~GRaGR~G-~~~~~~~~~~~~d~~~~~~~~~~ 344 (470)
T TIGR00614 306 SMESYYQESGRAGRDG-LPSECHLFYAPADINRLRRLLME 344 (470)
T ss_pred CHHHHHhhhcCcCCCC-CCceEEEEechhHHHHHHHHHhc
Confidence 9999999999999999 68999999999998887777654
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.8e-43 Score=414.00 Aligned_cols=333 Identities=19% Similarity=0.345 Sum_probs=260.5
Q ss_pred CCHHHHHHHHH-CCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHH
Q 003910 232 FSTQLMHAISK-QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTREL 310 (787)
Q Consensus 232 l~~~l~~~l~~-~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreL 310 (787)
++....+.|++ .||..|+|+|.++|+.++.++|+++++|||+|||++|++|++.. ...+|||+|+++|
T Consensus 9 ~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~-----------~g~tlVisPl~sL 77 (607)
T PRK11057 9 LESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL-----------DGLTLVVSPLISL 77 (607)
T ss_pred chhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc-----------CCCEEEEecHHHH
Confidence 33444455554 59999999999999999999999999999999999999999853 2458999999999
Q ss_pred HHHHHHHHHHHhhhcCceEEEEECCCChHHHHH---HHhc-CCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhc
Q 003910 311 AHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK---ELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFD 386 (787)
Q Consensus 311 a~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~---~l~~-~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~ 386 (787)
+.|+++.++.+ ++.+.++.++........ .+.. ..+|+++||++|........+...++.+|||||||++.+
T Consensus 78 ~~dqv~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~ 153 (607)
T PRK11057 78 MKDQVDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQ 153 (607)
T ss_pred HHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCcccccc
Confidence 99998888765 788888877776554432 2222 478999999999743222234455789999999999999
Q ss_pred CC--ChHHHHHH--hhhcCCCceEEEEeccCcHHHHHHHHHHh--CCCeEEEecccccccccceEEEEecCCCcchHHHH
Q 003910 387 LG--FEPQIRSI--VGQIRPDRQTLLFSATMPRKVEKLAREIL--SDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWL 460 (787)
Q Consensus 387 ~~--f~~~i~~i--l~~~~~~~q~ll~SAT~~~~v~~l~~~~l--~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L 460 (787)
|+ |.+.+..+ +....+..+++++|||+++.+...+...+ .+|... +... ..+++... ++ ....+...+
T Consensus 154 ~G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~-~~~~--~r~nl~~~--v~-~~~~~~~~l 227 (607)
T PRK11057 154 WGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISSF--DRPNIRYT--LV-EKFKPLDQL 227 (607)
T ss_pred ccCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEE-ECCC--CCCcceee--ee-eccchHHHH
Confidence 87 56555443 23334678999999999988765544443 344332 2211 22233221 22 222344555
Q ss_pred HHhcCCcCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCcc
Q 003910 461 LEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIK 540 (787)
Q Consensus 461 ~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~ 540 (787)
+..+... ...++||||+++..|+.++..|...++.+..+|++|++.+|..+++.|+.|+++|||||+++++|||+|+|+
T Consensus 228 ~~~l~~~-~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~ 306 (607)
T PRK11057 228 MRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVR 306 (607)
T ss_pred HHHHHhc-CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcC
Confidence 5555432 456899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEccccHHHHHHHH
Q 003910 541 SVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELV 587 (787)
Q Consensus 541 ~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~ 587 (787)
+||+||+|.++..|+||+||+||.| ..|.|++|+++.|...+..++
T Consensus 307 ~VI~~d~P~s~~~y~Qr~GRaGR~G-~~~~~ill~~~~d~~~~~~~~ 352 (607)
T PRK11057 307 FVVHFDIPRNIESYYQETGRAGRDG-LPAEAMLFYDPADMAWLRRCL 352 (607)
T ss_pred EEEEeCCCCCHHHHHHHhhhccCCC-CCceEEEEeCHHHHHHHHHHH
Confidence 9999999999999999999999999 689999999999887766554
No 40
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=5e-43 Score=419.53 Aligned_cols=401 Identities=19% Similarity=0.252 Sum_probs=298.2
Q ss_pred CccccCCCHHHHHHHHHHcCceecc--CCCC-----CccCCccccCCCHHHHHHHHHC-CCCCCcHHHHHHHHHHHcC--
Q 003910 193 SASISGMSEQDVMEYKKSLAIRVSG--FDVP-----RPVKTFEDCGFSTQLMHAISKQ-GYEKPTSIQCQALPIILSG-- 262 (787)
Q Consensus 193 ~~~i~~~s~~~~~~~~~~~~i~v~g--~~~P-----~pi~sf~~~~l~~~l~~~l~~~-g~~~ptp~Q~~ai~~il~g-- 262 (787)
.+.+.+|-...|...+.+..-.+.. ..+- +....=..+..+..++..+.+. +| +|||+|.++|+.++++
T Consensus 390 ~~~l~~lg~~~w~~~k~~~~~~~~~~a~~l~~l~a~r~~~~~~~~~~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~ 468 (926)
T TIGR00580 390 NPALDKLGGKSWEKTKAKVKKSVREIAAKLIELYAKRKAIKGHAFPPDLEWQQEFEDSFPF-EETPDQLKAIEEIKADME 468 (926)
T ss_pred CCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhc
Confidence 4457777778888777654211110 0000 0000000123445666666654 77 5999999999999975
Q ss_pred ----CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCCh
Q 003910 263 ----RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSK 338 (787)
Q Consensus 263 ----rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~ 338 (787)
+|+|+|++||+|||.+|++|++..+. .+++++||+||++||.|+++.+++++...++++..++|+.+.
T Consensus 469 ~~~~~d~Ll~adTGsGKT~val~a~l~al~--------~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~ 540 (926)
T TIGR00580 469 SPRPMDRLVCGDVGFGKTEVAMRAAFKAVL--------DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSA 540 (926)
T ss_pred ccCcCCEEEECCCCccHHHHHHHHHHHHHH--------hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccH
Confidence 79999999999999999999998873 357899999999999999999999988888999989887764
Q ss_pred HH---HHHHHhc-CCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEeccCc
Q 003910 339 LD---QFKELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMP 414 (787)
Q Consensus 339 ~~---~~~~l~~-~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~ 414 (787)
.+ ....+.. .++|||+||..| ...+.+.++.+|||||+|+ |.......+..+++..|+|+||||+.
T Consensus 541 ~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVIDEahr-----fgv~~~~~L~~~~~~~~vL~~SATpi 610 (926)
T TIGR00580 541 KEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIIDEEQR-----FGVKQKEKLKELRTSVDVLTLSATPI 610 (926)
T ss_pred HHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEeecccc-----cchhHHHHHHhcCCCCCEEEEecCCC
Confidence 43 3344555 489999999433 3456788999999999999 34455667777888899999999987
Q ss_pred HHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcch-HHHHHHhcCCcCCCCCEEEEecccccHHHHHHHHHHc
Q 003910 415 RKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEK-LPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK 493 (787)
Q Consensus 415 ~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k-~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~ 493 (787)
+....++...+.++..+..... ....+.+.+... .... ...+...+ ...++++|||++++.++.+++.|.+.
T Consensus 611 prtl~~~l~g~~d~s~I~~~p~--~R~~V~t~v~~~--~~~~i~~~i~~el---~~g~qv~if~n~i~~~e~l~~~L~~~ 683 (926)
T TIGR00580 611 PRTLHMSMSGIRDLSIIATPPE--DRLPVRTFVMEY--DPELVREAIRREL---LRGGQVFYVHNRIESIEKLATQLREL 683 (926)
T ss_pred HHHHHHHHhcCCCcEEEecCCC--CccceEEEEEec--CHHHHHHHHHHHH---HcCCeEEEEECCcHHHHHHHHHHHHh
Confidence 7665555555666665554322 122344433222 1111 12222222 24679999999999999999999985
Q ss_pred --CCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEEEecCCC-CHHHHHHHhhccCCCCCCCcE
Q 003910 494 --GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIAR-DMDMHVHRIGRTGRAGDKDGT 570 (787)
Q Consensus 494 --g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~~d~p~-s~~~y~QriGR~gR~G~~~G~ 570 (787)
++++..+||.|++.+|..++..|++|+++|||||+++++|||||++++||++++|. ....|.||+||+||.| +.|.
T Consensus 684 ~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g-~~g~ 762 (926)
T TIGR00580 684 VPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSK-KKAY 762 (926)
T ss_pred CCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCC-CCeE
Confidence 78999999999999999999999999999999999999999999999999999976 5779999999999998 6899
Q ss_pred EEEEEcccc--HHHHHHHHHHHHHcC---CCccHHHHHHHHhcCcccccccccCCCCCCCCCCCCC
Q 003910 571 AYTLVTQKE--ARFAGELVNSLIAAG---QNVSMELMDLAMKDGRFRSKRDARKGGGKKGKGRGGA 631 (787)
Q Consensus 571 ~i~l~~~~d--~~~~~~l~~~l~~~~---~~vp~~l~~~a~~~~~~~~~~~~r~~g~~~g~g~ggg 631 (787)
||+|+.+.+ .....+.++.+++.. ..+.....|+.+ |+.|...|..++|.
T Consensus 763 aill~~~~~~l~~~~~~RL~~~~~~~~~g~gf~ia~~Dl~~-----------Rg~G~~lG~~QsG~ 817 (926)
T TIGR00580 763 AYLLYPHQKALTEDAQKRLEAIQEFSELGAGFKIALHDLEI-----------RGAGNLLGEEQSGH 817 (926)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHhhcchhhHHHHHHHHHh-----------cCCcCCCCCcccCc
Confidence 999987653 245555666666654 478778888877 67777777666654
No 41
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=6.5e-43 Score=422.89 Aligned_cols=342 Identities=22% Similarity=0.295 Sum_probs=253.0
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCccccc-CCCCEEEEEcCcHHH
Q 003910 232 FSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQK-EEGPIGVICAPTREL 310 (787)
Q Consensus 232 l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~-~~~p~vLIl~PtreL 310 (787)
|++.+.+.+.+ +|..|||+|.++|+.+++|+|+|++||||||||++|++|++.+++....... ..++++|||+||++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 56666666655 7999999999999999999999999999999999999999999875432111 346789999999999
Q ss_pred HHHHHHHHHH-------Hhh----hc-CceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccc--cccceeEE
Q 003910 311 AHQIYLETKK-------FAK----SH-GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKAL--TMSRVTYL 376 (787)
Q Consensus 311 a~Qi~~~~~~-------~~~----~~-~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~--~l~~i~~l 376 (787)
+.|+++.+.. ++. .. ++++.+.+|+.+.......+...++|||+||++|..++....+ .|.++++|
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 9999886653 221 12 6788889999888777667777899999999999887765432 47899999
Q ss_pred EEechhhhhcCCChHHHHHHhh----hcCCCceEEEEeccCcHHHHHHHHHHhCC-----CeEEEecccccccccceEEE
Q 003910 377 VLDEADRMFDLGFEPQIRSIVG----QIRPDRQTLLFSATMPRKVEKLAREILSD-----PVRVTVGEVGMANEDITQVV 447 (787)
Q Consensus 377 ViDEah~m~~~~f~~~i~~il~----~~~~~~q~ll~SAT~~~~v~~l~~~~l~~-----p~~i~v~~~~~~~~~i~q~~ 447 (787)
||||||.|.+..+...+..++. ...+..|++++|||+++ ...++.++... +..+.+-.... ...+...+
T Consensus 177 VIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~-~~~va~~L~~~~~~~~~r~~~iv~~~~-~k~~~i~v 254 (876)
T PRK13767 177 IVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEP-LEEVAKFLVGYEDDGEPRDCEIVDARF-VKPFDIKV 254 (876)
T ss_pred EEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCC-HHHHHHHhcCccccCCCCceEEEccCC-CccceEEE
Confidence 9999999998766655544443 33467899999999975 34455444321 11111111110 01111111
Q ss_pred Ee-----c-CCCcchHHHHHHhcCCcC-CCCCEEEEecccccHHHHHHHHHHc------CCceeeccCCCCHHHHHHHHH
Q 003910 448 HV-----I-PSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQK------GFKAAALHGDKDQASRMEILQ 514 (787)
Q Consensus 448 ~~-----~-~~~~~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~~------g~~v~~lhg~~~~~eR~~~l~ 514 (787)
.. . .........+...|.... ...++||||+++..|+.++..|... +..+..+||++++.+|..+++
T Consensus 255 ~~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~ 334 (876)
T PRK13767 255 ISPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEE 334 (876)
T ss_pred eccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHH
Confidence 00 0 011111122233332221 2468999999999999999999873 467999999999999999999
Q ss_pred HhhcCCccEEEEehhhhccCCCCCccEEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEc
Q 003910 515 KFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVT 576 (787)
Q Consensus 515 ~F~~G~~~VLVaT~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~ 576 (787)
.|++|.++|||||+++++|||||++++||+|+.|.++..|+||+||+||.+...+..+++..
T Consensus 335 ~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 335 KLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVV 396 (876)
T ss_pred HHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEc
Confidence 99999999999999999999999999999999999999999999999997533334444433
No 42
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=4.2e-43 Score=420.68 Aligned_cols=338 Identities=24% Similarity=0.364 Sum_probs=264.9
Q ss_pred CccccCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEE
Q 003910 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPI-ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC 304 (787)
Q Consensus 226 sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~-il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl 304 (787)
.|++++|++.+++.+.+.||.+|+|+|.++++. ++.++|+|+++|||||||++|.+|++.++. .+.++|||
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~--------~~~kal~i 73 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA--------RGGKALYI 73 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh--------cCCcEEEE
Confidence 478899999999999999999999999999998 778999999999999999999999999984 25679999
Q ss_pred cCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhh
Q 003910 305 APTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRM 384 (787)
Q Consensus 305 ~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m 384 (787)
+||++||.|+++.++++.. .++++..++|+...... ....++||||||+++..++.+....+.++++|||||+|.|
T Consensus 74 ~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l 149 (737)
T PRK02362 74 VPLRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLI 149 (737)
T ss_pred eChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECcccc
Confidence 9999999999999998754 48999999988654432 2345899999999999988766566889999999999999
Q ss_pred hcCCChHHHHHHhhhc---CCCceEEEEeccCcHHHHHHHHHHhCC-------CeEEEeccc--ccccccceEEEEecCC
Q 003910 385 FDLGFEPQIRSIVGQI---RPDRQTLLFSATMPRKVEKLAREILSD-------PVRVTVGEV--GMANEDITQVVHVIPS 452 (787)
Q Consensus 385 ~~~~f~~~i~~il~~~---~~~~q~ll~SAT~~~~v~~l~~~~l~~-------p~~i~v~~~--~~~~~~i~q~~~~~~~ 452 (787)
.+.++...+..++..+ .+..|+|++|||+++ ..+++.|+-.. |+.+..+.. ........+.......
T Consensus 150 ~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n-~~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~ 228 (737)
T PRK02362 150 DSANRGPTLEVTLAKLRRLNPDLQVVALSATIGN-ADELADWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQREVEVPS 228 (737)
T ss_pred CCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCC-HHHHHHHhCCCcccCCCCCCCCeeeEecCCeeccccccccCCCcc
Confidence 9888888887776655 478899999999985 35566555322 211111000 0000000000000011
Q ss_pred CcchHHHHHHhcCCcCCCCCEEEEecccccHHHHHHHHHHc------------------------------------CCc
Q 003910 453 DAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK------------------------------------GFK 496 (787)
Q Consensus 453 ~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~------------------------------------g~~ 496 (787)
.......+.+.+. ..+++||||+++..|+.++..|... ...
T Consensus 229 ~~~~~~~~~~~~~---~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~g 305 (737)
T PRK02362 229 KDDTLNLVLDTLE---EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKG 305 (737)
T ss_pred chHHHHHHHHHHH---cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhC
Confidence 1122233333332 4679999999999999998888643 136
Q ss_pred eeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEEE----ec-----CCCCHHHHHHHhhccCCCC-C
Q 003910 497 AAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN----FD-----IARDMDMHVHRIGRTGRAG-D 566 (787)
Q Consensus 497 v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~----~d-----~p~s~~~y~QriGR~gR~G-~ 566 (787)
+..+|++|++.+|..+++.|++|.++|||||+++++|+|+|.+++||+ || .|.++.+|+||+|||||.| .
T Consensus 306 va~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d 385 (737)
T PRK02362 306 AAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLD 385 (737)
T ss_pred EEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCC
Confidence 889999999999999999999999999999999999999999999997 77 5889999999999999999 3
Q ss_pred CCcEEEEEEcccc
Q 003910 567 KDGTAYTLVTQKE 579 (787)
Q Consensus 567 ~~G~~i~l~~~~d 579 (787)
..|.|++++...+
T Consensus 386 ~~G~~ii~~~~~~ 398 (737)
T PRK02362 386 PYGEAVLLAKSYD 398 (737)
T ss_pred CCceEEEEecCch
Confidence 3599999886643
No 43
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=5.9e-43 Score=407.47 Aligned_cols=315 Identities=21% Similarity=0.292 Sum_probs=250.2
Q ss_pred CCCCCCcHHHHHHHHHHHcCC-CEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEE-EcCcHHHHHHHHHHHHH
Q 003910 243 QGYEKPTSIQCQALPIILSGR-DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI-CAPTRELAHQIYLETKK 320 (787)
Q Consensus 243 ~g~~~ptp~Q~~ai~~il~gr-dvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLI-l~PtreLa~Qi~~~~~~ 320 (787)
.||. |||||.++|+.++.|+ ++++++|||||||.+|.++++... . ....|+.|| ++|||+||.|+++.+.+
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~-~-----~~~~~~rLv~~vPtReLa~Qi~~~~~~ 84 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVE-I-----GAKVPRRLVYVVNRRTVVDQVTEEAEK 84 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhcccc-c-----cccccceEEEeCchHHHHHHHHHHHHH
Confidence 4787 9999999999999998 577789999999997665554221 1 123455666 67999999999999999
Q ss_pred Hhhhc-----------------------CceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccc---------
Q 003910 321 FAKSH-----------------------GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKAL--------- 368 (787)
Q Consensus 321 ~~~~~-----------------------~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~--------- 368 (787)
+++.+ .+++.+++||.+...++..+..+++|||+|+ +++.+..+
T Consensus 85 ~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D~i~sr~L~~gYg~~~~ 160 (844)
T TIGR02621 85 IGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----DMIGSRLLFSGYGCGFK 160 (844)
T ss_pred HHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH----HHHcCCccccccccccc
Confidence 98855 4889999999999999999999999999995 45544443
Q ss_pred -------cccceeEEEEechhhhhcCCChHHHHHHhhhc--CCC---ceEEEEeccCcHHHHHHHHHHhCCCeEEEeccc
Q 003910 369 -------TMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI--RPD---RQTLLFSATMPRKVEKLAREILSDPVRVTVGEV 436 (787)
Q Consensus 369 -------~l~~i~~lViDEah~m~~~~f~~~i~~il~~~--~~~---~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~ 436 (787)
.|.++++||||||| ++++|...+..|+..+ ++. +|+++||||++..+..++..++.++..+.+...
T Consensus 161 ~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~ 238 (844)
T TIGR02621 161 SRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKK 238 (844)
T ss_pred cccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccc
Confidence 26889999999999 7889999999999965 332 699999999999998888888888877666544
Q ss_pred ccccccceEEEEecCCCcchHHHHHHhcCC--cCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHH----
Q 003910 437 GMANEDITQVVHVIPSDAEKLPWLLEKLPG--MIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRM---- 510 (787)
Q Consensus 437 ~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~--~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~---- 510 (787)
......+.+.+ .+ ....|+..++..+.. ....+++|||||++..|+.|++.|...++ ..|||.|++.+|.
T Consensus 239 ~l~a~ki~q~v-~v-~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~ 314 (844)
T TIGR02621 239 RLAAKKIVKLV-PP-SDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVK 314 (844)
T ss_pred cccccceEEEE-ec-ChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHH
Confidence 44444555532 22 222344333332211 12356899999999999999999998876 8999999999999
Q ss_pred -HHHHHhhc----CC-------ccEEEEehhhhccCCCCCccEEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEcc
Q 003910 511 -EILQKFKS----GV-------YHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ 577 (787)
Q Consensus 511 -~~l~~F~~----G~-------~~VLVaT~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~ 577 (787)
.+++.|++ |. ..|||||+++++||||+. ++||++..| ++.|+||+||+||.|.+.+.++++++.
T Consensus 315 ~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 315 KEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred HHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 88999987 44 689999999999999986 899998777 689999999999999544555666644
No 44
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=5e-42 Score=419.14 Aligned_cols=402 Identities=18% Similarity=0.225 Sum_probs=298.1
Q ss_pred CccccCCCHHHHHHHHHHcCceecc--CCCC-----CccCCccccCCCHHHHHH-HHHCCCCCCcHHHHHHHHHHHcC--
Q 003910 193 SASISGMSEQDVMEYKKSLAIRVSG--FDVP-----RPVKTFEDCGFSTQLMHA-ISKQGYEKPTSIQCQALPIILSG-- 262 (787)
Q Consensus 193 ~~~i~~~s~~~~~~~~~~~~i~v~g--~~~P-----~pi~sf~~~~l~~~l~~~-l~~~g~~~ptp~Q~~ai~~il~g-- 262 (787)
.+.+.++-...|...+++..-.+.. ..+- +....=..+..+..++.. ....+| .||++|.++|+.++.+
T Consensus 539 ~~~l~~lg~~~w~~~k~~~~~~~~~~a~~l~~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~ 617 (1147)
T PRK10689 539 NAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMC 617 (1147)
T ss_pred CCccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhh
Confidence 3457777778888777554221110 0000 000000011223344444 455577 7999999999999987
Q ss_pred ----CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCCh
Q 003910 263 ----RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSK 338 (787)
Q Consensus 263 ----rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~ 338 (787)
+|+|+|++||+|||.+|+.+++..+. .++++|||+||++||.|+++.+++++...++++.+++++.+.
T Consensus 618 ~~~~~d~Ll~a~TGsGKT~val~aa~~~~~--------~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~ 689 (1147)
T PRK10689 618 QPLAMDRLVCGDVGFGKTEVAMRAAFLAVE--------NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSA 689 (1147)
T ss_pred cCCCCCEEEEcCCCcCHHHHHHHHHHHHHH--------cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCH
Confidence 89999999999999999988877652 467899999999999999999999887778899889988887
Q ss_pred HHHHHHH---hc-CCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEeccCc
Q 003910 339 LDQFKEL---KA-GCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMP 414 (787)
Q Consensus 339 ~~~~~~l---~~-~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~ 414 (787)
.++...+ .. .++|||+||+.|. ..+.+.++++|||||+|++ ++ .....+..+++++|+++||||++
T Consensus 690 ~e~~~il~~l~~g~~dIVVgTp~lL~-----~~v~~~~L~lLVIDEahrf---G~--~~~e~lk~l~~~~qvLl~SATpi 759 (1147)
T PRK10689 690 KEQTQILAEAAEGKIDILIGTHKLLQ-----SDVKWKDLGLLIVDEEHRF---GV--RHKERIKAMRADVDILTLTATPI 759 (1147)
T ss_pred HHHHHHHHHHHhCCCCEEEECHHHHh-----CCCCHhhCCEEEEechhhc---ch--hHHHHHHhcCCCCcEEEEcCCCC
Confidence 6665433 33 5899999996442 3456788999999999996 33 23455677888999999999988
Q ss_pred HHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcchHHHHHHhcCCcCCCCCEEEEecccccHHHHHHHHHHc-
Q 003910 415 RKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK- 493 (787)
Q Consensus 415 ~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~- 493 (787)
+....++...+.++..+...... ...+.+.+........+ ..++ .+....++++||||++..++.+++.|.+.
T Consensus 760 prtl~l~~~gl~d~~~I~~~p~~--r~~v~~~~~~~~~~~~k-~~il---~el~r~gqv~vf~n~i~~ie~la~~L~~~~ 833 (1147)
T PRK10689 760 PRTLNMAMSGMRDLSIIATPPAR--RLAVKTFVREYDSLVVR-EAIL---REILRGGQVYYLYNDVENIQKAAERLAELV 833 (1147)
T ss_pred HHHHHHHHhhCCCcEEEecCCCC--CCCceEEEEecCcHHHH-HHHH---HHHhcCCeEEEEECCHHHHHHHHHHHHHhC
Confidence 88778888888888777653321 22344433332111111 2222 22234679999999999999999999987
Q ss_pred -CCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEEEecCC-CCHHHHHHHhhccCCCCCCCcEE
Q 003910 494 -GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIA-RDMDMHVHRIGRTGRAGDKDGTA 571 (787)
Q Consensus 494 -g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~~d~p-~s~~~y~QriGR~gR~G~~~G~~ 571 (787)
++.+.++||+|++.+|.+++..|++|+++|||||+++++|||||++++||+.+.. .+...|+||+||+||.| +.|.|
T Consensus 834 p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g-~~g~a 912 (1147)
T PRK10689 834 PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSH-HQAYA 912 (1147)
T ss_pred CCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCC-CceEE
Confidence 7899999999999999999999999999999999999999999999999966553 35678999999999999 67999
Q ss_pred EEEEcccc--HHHHHHHHHHHHHcCC---CccHHHHHHHHhcCcccccccccCCCCCCCCCCCCC
Q 003910 572 YTLVTQKE--ARFAGELVNSLIAAGQ---NVSMELMDLAMKDGRFRSKRDARKGGGKKGKGRGGA 631 (787)
Q Consensus 572 i~l~~~~d--~~~~~~l~~~l~~~~~---~vp~~l~~~a~~~~~~~~~~~~r~~g~~~g~g~ggg 631 (787)
|+++.... ...+...++.+++... .+...+.|+.+ |+.|...|.-++|.
T Consensus 913 ~ll~~~~~~~~~~~~~rl~~~~~~~~lg~gf~~a~~dl~~-----------rg~g~~~g~~q~g~ 966 (1147)
T PRK10689 913 WLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEI-----------RGAGELLGEEQSGQ 966 (1147)
T ss_pred EEEeCCCcccCHHHHHHHHHHHHhcCCcchHHHHHHHHHh-----------cCCccCCCCccCCC
Confidence 98875432 3445555666666544 88888888877 77888888777765
No 45
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=1.2e-41 Score=402.61 Aligned_cols=360 Identities=22% Similarity=0.292 Sum_probs=272.3
Q ss_pred HHHHHHHH-HCCCCCCcHHHHHHHHHHHcC------CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcC
Q 003910 234 TQLMHAIS-KQGYEKPTSIQCQALPIILSG------RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAP 306 (787)
Q Consensus 234 ~~l~~~l~-~~g~~~ptp~Q~~ai~~il~g------rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~P 306 (787)
..+++.+. ..+| +||++|.++++.|..+ .++|++++||||||++|++|++..+. .+.++|||+|
T Consensus 248 ~~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~--------~g~q~lilaP 318 (681)
T PRK10917 248 GELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE--------AGYQAALMAP 318 (681)
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH--------cCCeEEEEec
Confidence 44555444 4466 6999999999999987 48999999999999999999998872 4778999999
Q ss_pred cHHHHHHHHHHHHHHhhhcCceEEEEECCCChH---HHHHHHhcC-CcEEEeCHHHHHHHHHhccccccceeEEEEechh
Q 003910 307 TRELAHQIYLETKKFAKSHGIRVSAVYGGMSKL---DQFKELKAG-CEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD 382 (787)
Q Consensus 307 treLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~---~~~~~l~~~-~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah 382 (787)
|++||.|+++.+++++...++++.+++|+.+.. .++..+..+ ++|||+||+.|.+ .+.+.++.+|||||+|
T Consensus 319 T~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~H 393 (681)
T PRK10917 319 TEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQH 393 (681)
T ss_pred cHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechh
Confidence 999999999999999998899999999998853 344455554 9999999988754 3457889999999999
Q ss_pred hhhcCCChHHHHHHhhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcchHHHHHH
Q 003910 383 RMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLE 462 (787)
Q Consensus 383 ~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L~~ 462 (787)
++ ....+..+......+++|+||||+.+.... ..++.+.....+...+.....+.+.+... .+...+++
T Consensus 394 rf-----g~~qr~~l~~~~~~~~iL~~SATp~prtl~--~~~~g~~~~s~i~~~p~~r~~i~~~~~~~----~~~~~~~~ 462 (681)
T PRK10917 394 RF-----GVEQRLALREKGENPHVLVMTATPIPRTLA--MTAYGDLDVSVIDELPPGRKPITTVVIPD----SRRDEVYE 462 (681)
T ss_pred hh-----hHHHHHHHHhcCCCCCEEEEeCCCCHHHHH--HHHcCCCceEEEecCCCCCCCcEEEEeCc----ccHHHHHH
Confidence 95 333344444445568999999997655433 33344433333333333333444433322 22233333
Q ss_pred hcCCc-CCCCCEEEEecccc--------cHHHHHHHHHHc--CCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhh
Q 003910 463 KLPGM-IDDGDVLVFASKKT--------TVDEIESQLAQK--GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAA 531 (787)
Q Consensus 463 ~L~~~-~~~~kvLVF~~s~~--------~a~~l~~~L~~~--g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~ 531 (787)
.+... ....+++|||+.++ .+..+++.|... ++.+..+||+|++.+|..+++.|++|+++|||||++++
T Consensus 463 ~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie 542 (681)
T PRK10917 463 RIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIE 542 (681)
T ss_pred HHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECccee
Confidence 33322 23558999999654 355677777765 47899999999999999999999999999999999999
Q ss_pred ccCCCCCccEEEEecCCC-CHHHHHHHhhccCCCCCCCcEEEEEEccccHHHHHHHHHHHHHcCCCccHHHHHHHHhcCc
Q 003910 532 RGLDIKSIKSVVNFDIAR-DMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLAMKDGR 610 (787)
Q Consensus 532 rGlDip~v~~VI~~d~p~-s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~l~~~~~~vp~~l~~~a~~~~~ 610 (787)
+|+|+|++++||++++|. ....|.||+||+||.| +.|.||+++...........++.|.++...+.....|+..
T Consensus 543 ~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g-~~g~~ill~~~~~~~~~~~rl~~~~~~~dgf~iae~dl~~---- 617 (681)
T PRK10917 543 VGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGA-AQSYCVLLYKDPLSETARERLKIMRETNDGFVIAEKDLEL---- 617 (681)
T ss_pred eCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCC-CceEEEEEECCCCChhHHHHHHHHHHhcchHHHHHHhHhh----
Confidence 999999999999999997 4677888999999998 6799999996554445667788898888888777777766
Q ss_pred ccccccccCCCCCCCCCCCC
Q 003910 611 FRSKRDARKGGGKKGKGRGG 630 (787)
Q Consensus 611 ~~~~~~~r~~g~~~g~g~gg 630 (787)
|+.|...|..+.|
T Consensus 618 -------rg~g~~~g~~q~g 630 (681)
T PRK10917 618 -------RGPGELLGTRQSG 630 (681)
T ss_pred -------CCCccccCceecC
Confidence 5566665544433
No 46
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=2.1e-42 Score=405.78 Aligned_cols=326 Identities=21% Similarity=0.357 Sum_probs=261.5
Q ss_pred HHHH-CCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHH
Q 003910 239 AISK-QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLE 317 (787)
Q Consensus 239 ~l~~-~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~ 317 (787)
.|++ .||..|+|+|.++|+.++.|+|+++++|||+|||++|++|++.. ...+|||+|+++|+.|+++.
T Consensus 4 ~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~-----------~g~~lVisPl~sL~~dq~~~ 72 (591)
T TIGR01389 4 VLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL-----------KGLTVVISPLISLMKDQVDQ 72 (591)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc-----------CCcEEEEcCCHHHHHHHHHH
Confidence 3444 59999999999999999999999999999999999999998743 23589999999999999888
Q ss_pred HHHHhhhcCceEEEEECCCChHHHHH---HHh-cCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCC--ChH
Q 003910 318 TKKFAKSHGIRVSAVYGGMSKLDQFK---ELK-AGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG--FEP 391 (787)
Q Consensus 318 ~~~~~~~~~i~v~~~~gg~~~~~~~~---~l~-~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~--f~~ 391 (787)
++.+ ++.+..+.++....+... .+. ...+|+++||++|........+...++++|||||||++.+|+ |.+
T Consensus 73 l~~~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp 148 (591)
T TIGR01389 73 LRAA----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRP 148 (591)
T ss_pred HHHc----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHH
Confidence 8775 788888888876654332 222 358999999999975443444556789999999999999887 666
Q ss_pred HHHHHh---hhcCCCceEEEEeccCcHHHHHHHHHHhC--CCeEEEecccccccccceEEEEecCCCcchHHHHHHhcCC
Q 003910 392 QIRSIV---GQIRPDRQTLLFSATMPRKVEKLAREILS--DPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPG 466 (787)
Q Consensus 392 ~i~~il---~~~~~~~q~ll~SAT~~~~v~~l~~~~l~--~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~ 466 (787)
.+..+. ..+ +..+++++|||++..+...+...+. ++..+. . .....++...+ . ....+...+...+..
T Consensus 149 ~y~~l~~l~~~~-~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~-~--~~~r~nl~~~v--~-~~~~~~~~l~~~l~~ 221 (591)
T TIGR01389 149 EYQRLGSLAERF-PQVPRIALTATADAETRQDIRELLRLADANEFI-T--SFDRPNLRFSV--V-KKNNKQKFLLDYLKK 221 (591)
T ss_pred HHHHHHHHHHhC-CCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEe-c--CCCCCCcEEEE--E-eCCCHHHHHHHHHHh
Confidence 655443 333 3456999999999888776666654 333222 1 11222332222 2 223466667776654
Q ss_pred cCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEEEec
Q 003910 467 MIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFD 546 (787)
Q Consensus 467 ~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~~d 546 (787)
.. ..++||||+++..++.+++.|...++.+..+||+|+..+|..+++.|.+|+++|||||+++++|||+|+|++||+|+
T Consensus 222 ~~-~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~ 300 (591)
T TIGR01389 222 HR-GQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYD 300 (591)
T ss_pred cC-CCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcC
Confidence 32 56899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHhhccCCCCCCCcEEEEEEccccHHHHHHHHH
Q 003910 547 IARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVN 588 (787)
Q Consensus 547 ~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~ 588 (787)
+|.+++.|+|++||+||.| +.+.|++|+++.|...+..++.
T Consensus 301 ~p~s~~~y~Q~~GRaGR~G-~~~~~il~~~~~d~~~~~~~i~ 341 (591)
T TIGR01389 301 MPGNLESYYQEAGRAGRDG-LPAEAILLYSPADIALLKRRIE 341 (591)
T ss_pred CCCCHHHHhhhhccccCCC-CCceEEEecCHHHHHHHHHHHh
Confidence 9999999999999999999 6899999999988876665543
No 47
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=2.7e-42 Score=412.72 Aligned_cols=339 Identities=22% Similarity=0.309 Sum_probs=266.2
Q ss_pred CccccCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEE
Q 003910 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPI-ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC 304 (787)
Q Consensus 226 sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~-il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl 304 (787)
+|+++++++.+.+.|.+.||.+|+|+|.++++. ++.++|+|+++|||||||++|.+|++.+++. .+.++|||
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~-------~~~~~l~l 74 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR-------EGGKAVYL 74 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh-------cCCeEEEE
Confidence 577889999999999999999999999999985 8899999999999999999999999998754 25689999
Q ss_pred cCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhh
Q 003910 305 APTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRM 384 (787)
Q Consensus 305 ~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m 384 (787)
+|+++||.|+++.++.+. ..++++..++|+...... ....++|||+||+++..++......++++++|||||+|.+
T Consensus 75 ~P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l 150 (720)
T PRK00254 75 VPLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLI 150 (720)
T ss_pred eChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCcc
Confidence 999999999999999874 468999999998765432 2346899999999999988776667889999999999999
Q ss_pred hcCCChHHHHHHhhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCC-cch-----HH
Q 003910 385 FDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSD-AEK-----LP 458 (787)
Q Consensus 385 ~~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~-~~k-----~~ 458 (787)
.+.++...+..++..+....|+|++|||+++ ..+++.++....+.............+.+.+...... ..+ ..
T Consensus 151 ~~~~rg~~le~il~~l~~~~qiI~lSATl~n-~~~la~wl~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (720)
T PRK00254 151 GSYDRGATLEMILTHMLGRAQILGLSATVGN-AEELAEWLNAELVVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWES 229 (720)
T ss_pred CCccchHHHHHHHHhcCcCCcEEEEEccCCC-HHHHHHHhCCccccCCCCCCcceeeEecCCeeeccCcchhcchHHHHH
Confidence 9988999999999999889999999999986 4667765533221111100000000011111111111 011 12
Q ss_pred HHHHhcCCcCCCCCEEEEecccccHHHHHHHHHHc---------------------------------CCceeeccCCCC
Q 003910 459 WLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK---------------------------------GFKAAALHGDKD 505 (787)
Q Consensus 459 ~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~---------------------------------g~~v~~lhg~~~ 505 (787)
.+.+.+. ..+++||||+++..|+.++..|... ...+..+|++|+
T Consensus 230 ~~~~~i~---~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~ 306 (720)
T PRK00254 230 LVYDAVK---KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLG 306 (720)
T ss_pred HHHHHHH---hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCC
Confidence 2233332 3568999999999998887666421 235899999999
Q ss_pred HHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEEE-------ecCCC-CHHHHHHHhhccCCCC-CCCcEEEEEEc
Q 003910 506 QASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN-------FDIAR-DMDMHVHRIGRTGRAG-DKDGTAYTLVT 576 (787)
Q Consensus 506 ~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~-------~d~p~-s~~~y~QriGR~gR~G-~~~G~~i~l~~ 576 (787)
+.+|..+++.|++|.++|||||+++++|+|+|.+++||. ++.|. .+.+|+||+||+||.| ...|.+++++.
T Consensus 307 ~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~ 386 (720)
T PRK00254 307 RTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVAT 386 (720)
T ss_pred HHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEec
Confidence 999999999999999999999999999999999999994 45444 5679999999999987 45699999987
Q ss_pred ccc
Q 003910 577 QKE 579 (787)
Q Consensus 577 ~~d 579 (787)
..+
T Consensus 387 ~~~ 389 (720)
T PRK00254 387 TEE 389 (720)
T ss_pred Ccc
Confidence 655
No 48
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=2.7e-41 Score=397.29 Aligned_cols=360 Identities=20% Similarity=0.262 Sum_probs=268.3
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHHHHcC------CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcH
Q 003910 235 QLMHAISKQGYEKPTSIQCQALPIILSG------RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTR 308 (787)
Q Consensus 235 ~l~~~l~~~g~~~ptp~Q~~ai~~il~g------rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~Ptr 308 (787)
.+.+.+...+| +||++|.++|+.|+.+ .+.|++++||||||++|++|++..+. .++++|||+||+
T Consensus 224 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~--------~g~qvlilaPT~ 294 (630)
T TIGR00643 224 LLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE--------AGYQVALMAPTE 294 (630)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH--------cCCcEEEECCHH
Confidence 34455667788 7999999999999976 36899999999999999999998873 367899999999
Q ss_pred HHHHHHHHHHHHHhhhcCceEEEEECCCChHH---HHHHHhc-CCcEEEeCHHHHHHHHHhccccccceeEEEEechhhh
Q 003910 309 ELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD---QFKELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRM 384 (787)
Q Consensus 309 eLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~---~~~~l~~-~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m 384 (787)
+||.|+++.+++++...++++.+++|+....+ .+..+.. .++|||+||+.|.+ .+.+.++.+|||||+|++
T Consensus 295 ~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~f 369 (630)
T TIGR00643 295 ILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRF 369 (630)
T ss_pred HHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhc
Confidence 99999999999999988999999999987654 3444444 47999999998754 345788999999999984
Q ss_pred hcCCChHHHHHHhhhcC--CCceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcchHHHHHH
Q 003910 385 FDLGFEPQIRSIVGQIR--PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLE 462 (787)
Q Consensus 385 ~~~~f~~~i~~il~~~~--~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L~~ 462 (787)
.. .+...++.... ..+|+|+||||+.+... +...+.+.....+...+.....+...+... .....++.
T Consensus 370 g~----~qr~~l~~~~~~~~~~~~l~~SATp~prtl--~l~~~~~l~~~~i~~~p~~r~~i~~~~~~~----~~~~~~~~ 439 (630)
T TIGR00643 370 GV----EQRKKLREKGQGGFTPHVLVMSATPIPRTL--ALTVYGDLDTSIIDELPPGRKPITTVLIKH----DEKDIVYE 439 (630)
T ss_pred cH----HHHHHHHHhcccCCCCCEEEEeCCCCcHHH--HHHhcCCcceeeeccCCCCCCceEEEEeCc----chHHHHHH
Confidence 32 12222333222 26789999999755432 223333322222222222223333333221 12233444
Q ss_pred hcCCc-CCCCCEEEEecccc--------cHHHHHHHHHHc--CCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhh
Q 003910 463 KLPGM-IDDGDVLVFASKKT--------TVDEIESQLAQK--GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAA 531 (787)
Q Consensus 463 ~L~~~-~~~~kvLVF~~s~~--------~a~~l~~~L~~~--g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~ 531 (787)
.+... ....+++|||+..+ .+..+++.|... ++.+..+||+|++.+|..+++.|++|+.+|||||++++
T Consensus 440 ~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie 519 (630)
T TIGR00643 440 FIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIE 519 (630)
T ss_pred HHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceee
Confidence 44332 23568999999764 455677777653 68899999999999999999999999999999999999
Q ss_pred ccCCCCCccEEEEecCCC-CHHHHHHHhhccCCCCCCCcEEEEEEccccHHHHHHHHHHHHHcCCCccHHHHHHHHhcCc
Q 003910 532 RGLDIKSIKSVVNFDIAR-DMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLAMKDGR 610 (787)
Q Consensus 532 rGlDip~v~~VI~~d~p~-s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~l~~~~~~vp~~l~~~a~~~~~ 610 (787)
+|||+|++++||+++.|. ....|.||+||+||.| +.|.|++++...........++.|......+.....++..
T Consensus 520 ~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g-~~g~~il~~~~~~~~~~~~rl~~~~~~~dgf~iae~dl~~---- 594 (630)
T TIGR00643 520 VGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGD-HQSYCLLVYKNPKSESAKKRLRVMADTLDGFVIAEEDLEL---- 594 (630)
T ss_pred cCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCC-CCcEEEEEECCCCCHHHHHHHHHHHhhcccHHHHHHHHhc----
Confidence 999999999999999997 5778888999999998 6899999995444455556678888888888777777776
Q ss_pred ccccccccCCCCCCCCCCCC
Q 003910 611 FRSKRDARKGGGKKGKGRGG 630 (787)
Q Consensus 611 ~~~~~~~r~~g~~~g~g~gg 630 (787)
|+.|...|..++|
T Consensus 595 -------Rg~g~~~g~~QsG 607 (630)
T TIGR00643 595 -------RGPGDLLGTKQSG 607 (630)
T ss_pred -------CCCcccCCCcccC
Confidence 5666666655554
No 49
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.3e-44 Score=348.63 Aligned_cols=333 Identities=29% Similarity=0.503 Sum_probs=282.0
Q ss_pred CCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEE
Q 003910 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC 304 (787)
Q Consensus 225 ~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl 304 (787)
+-|.++-|+|+++++|-..||..|+.+|.+|||...-|.|+++.|..|.|||.+|++.-|+.+-.- .....+|++
T Consensus 42 sgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv-----~g~vsvlvm 116 (387)
T KOG0329|consen 42 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPV-----DGQVSVLVM 116 (387)
T ss_pred cchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCC-----CCeEEEEEE
Confidence 457888899999999999999999999999999999999999999999999999999998887221 123468999
Q ss_pred cCcHHHHHHHHHHHHHHhhhc-CceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhh
Q 003910 305 APTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR 383 (787)
Q Consensus 305 ~PtreLa~Qi~~~~~~~~~~~-~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~ 383 (787)
|.||+||.||.++..+|.+.. ++++.+++||.........+++.++|+|+||++++.+++.+.++|++++.+|+||||.
T Consensus 117 chtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdk 196 (387)
T KOG0329|consen 117 CHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDK 196 (387)
T ss_pred eccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHH
Confidence 999999999999999998764 6899999999998888788888899999999999999999999999999999999998
Q ss_pred hhc-CCChHHHHHHhhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEEecccc-cccccceEEEEecCCCcchHHHHH
Q 003910 384 MFD-LGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVG-MANEDITQVVHVIPSDAEKLPWLL 461 (787)
Q Consensus 384 m~~-~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~~k~~~L~ 461 (787)
|+. .+....+..|++..+...|+++||||++++++..+++|+.+|..+.+.... .....+.|.+..+. +..|...|.
T Consensus 197 mle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLk-e~eKNrkl~ 275 (387)
T KOG0329|consen 197 MLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLK-ENEKNRKLN 275 (387)
T ss_pred HHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhh-hhhhhhhhh
Confidence 875 345778889999999999999999999999999999999999999886543 44556666665553 445666666
Q ss_pred HhcCCcCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccE
Q 003910 462 EKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKS 541 (787)
Q Consensus 462 ~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~ 541 (787)
++|..+ .-.+++||+.+... +. | ..+ ||||++.+||+||..++.
T Consensus 276 dLLd~L-eFNQVvIFvKsv~R------------------------------l~-f---~kr-~vat~lfgrgmdiervNi 319 (387)
T KOG0329|consen 276 DLLDVL-EFNQVVIFVKSVQR------------------------------LS-F---QKR-LVATDLFGRGMDIERVNI 319 (387)
T ss_pred hhhhhh-hhcceeEeeehhhh------------------------------hh-h---hhh-hHHhhhhccccCccccee
Confidence 655432 44689999988654 00 3 223 899999999999999999
Q ss_pred EEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEcc-ccHHHHHHHHHHHHHcCCCccHH
Q 003910 542 VVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ-KEARFAGELVNSLIAAGQNVSME 600 (787)
Q Consensus 542 VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~-~d~~~~~~l~~~l~~~~~~vp~~ 600 (787)
|||||+|.+.++|+||++|+||.| ..|.+++|++. +|...+..+...++-.-..+|.+
T Consensus 320 ~~NYdmp~~~DtYlHrv~rAgrfG-tkglaitfvs~e~da~iLn~vqdRf~v~i~eLpde 378 (387)
T KOG0329|consen 320 VFNYDMPEDSDTYLHRVARAGRFG-TKGLAITFVSDENDAKILNPVQDRFEVNIKELPDE 378 (387)
T ss_pred eeccCCCCCchHHHHHhhhhhccc-cccceeehhcchhhHHHhchhhHhhhccHhhcCcc
Confidence 999999999999999999999999 67999999976 46666666666666655666665
No 50
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.6e-40 Score=395.56 Aligned_cols=333 Identities=21% Similarity=0.307 Sum_probs=255.4
Q ss_pred CccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEc
Q 003910 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA 305 (787)
Q Consensus 226 sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~ 305 (787)
.|++++|++.+++.+.+.+|. |+|+|.++++.+++++++|+++|||||||+++.++++.++.. +.++|||+
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~--------~~k~v~i~ 72 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA--------GLKSIYIV 72 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh--------CCcEEEEe
Confidence 477889999999999999887 999999999999999999999999999999999999988743 45789999
Q ss_pred CcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhh
Q 003910 306 PTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (787)
Q Consensus 306 PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~ 385 (787)
|+++||.|++++++++. ..++++...+|+...... ....++|+|+||+++..++.+....+.++++|||||||++.
T Consensus 73 P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~ 148 (674)
T PRK01172 73 PLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIG 148 (674)
T ss_pred chHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhcc
Confidence 99999999999999865 468888888887654332 23468999999999999887766668899999999999999
Q ss_pred cCCChHHHHHHhhh---cCCCceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEE-----EecCCCcchH
Q 003910 386 DLGFEPQIRSIVGQ---IRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVV-----HVIPSDAEKL 457 (787)
Q Consensus 386 ~~~f~~~i~~il~~---~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~-----~~~~~~~~k~ 457 (787)
+.++...+..++.. ++++.|+|++|||+++ ..+++.++-...+...... ..+...+ ..+.......
T Consensus 149 d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n-~~~la~wl~~~~~~~~~r~-----vpl~~~i~~~~~~~~~~~~~~~ 222 (674)
T PRK01172 149 DEDRGPTLETVLSSARYVNPDARILALSATVSN-ANELAQWLNASLIKSNFRP-----VPLKLGILYRKRLILDGYERSQ 222 (674)
T ss_pred CCCccHHHHHHHHHHHhcCcCCcEEEEeCccCC-HHHHHHHhCCCccCCCCCC-----CCeEEEEEecCeeeeccccccc
Confidence 88888777776654 4578899999999986 4666665533221111100 0111000 0111111011
Q ss_pred HHHHHhcCC-cCCCCCEEEEecccccHHHHHHHHHHc-------------------------CCceeeccCCCCHHHHHH
Q 003910 458 PWLLEKLPG-MIDDGDVLVFASKKTTVDEIESQLAQK-------------------------GFKAAALHGDKDQASRME 511 (787)
Q Consensus 458 ~~L~~~L~~-~~~~~kvLVF~~s~~~a~~l~~~L~~~-------------------------g~~v~~lhg~~~~~eR~~ 511 (787)
..+...+.. ....+++||||+++..|+.++..|... ...+..+|++|++.+|..
T Consensus 223 ~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ 302 (674)
T PRK01172 223 VDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRF 302 (674)
T ss_pred ccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHH
Confidence 112222222 124579999999999999999988653 124788999999999999
Q ss_pred HHHHhhcCCccEEEEehhhhccCCCCCccEEEEecC---------CCCHHHHHHHhhccCCCC-CCCcEEEEEEccc
Q 003910 512 ILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDI---------ARDMDMHVHRIGRTGRAG-DKDGTAYTLVTQK 578 (787)
Q Consensus 512 ~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~~d~---------p~s~~~y~QriGR~gR~G-~~~G~~i~l~~~~ 578 (787)
+++.|++|.++|||||+++++|+|+|+. .||+++. |.++.+|.||+|||||.| ...|.+++++...
T Consensus 303 ve~~f~~g~i~VLvaT~~la~Gvnipa~-~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~ 378 (674)
T PRK01172 303 IEEMFRNRYIKVIVATPTLAAGVNLPAR-LVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASP 378 (674)
T ss_pred HHHHHHcCCCeEEEecchhhccCCCcce-EEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCc
Confidence 9999999999999999999999999985 5555543 457889999999999998 3457788776544
No 51
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=9.9e-39 Score=391.01 Aligned_cols=297 Identities=24% Similarity=0.310 Sum_probs=244.3
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhh
Q 003910 244 GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (787)
Q Consensus 244 g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~ 323 (787)
|+ +||++|.+++|.++.|+|++++||||+|||+ |+++++.++.. .++++|||+||++||.|+++.+++++.
T Consensus 78 G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~-------~g~~alIL~PTreLa~Qi~~~l~~l~~ 148 (1176)
T PRK09401 78 GS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK-------KGKKSYIIFPTRLLVEQVVEKLEKFGE 148 (1176)
T ss_pred CC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh-------cCCeEEEEeccHHHHHHHHHHHHHHhh
Confidence 66 8999999999999999999999999999996 56666655522 378899999999999999999999999
Q ss_pred hcCceEEEEECCCCh-----HHHHHHHhc-CCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhc-----------
Q 003910 324 SHGIRVSAVYGGMSK-----LDQFKELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFD----------- 386 (787)
Q Consensus 324 ~~~i~v~~~~gg~~~-----~~~~~~l~~-~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~----------- 386 (787)
..++.+.+++++... .++...+.. .++|+|+||++|.+.+. .+.+..+++|||||||+|++
T Consensus 149 ~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~ 226 (1176)
T PRK09401 149 KVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNIDKLLYL 226 (1176)
T ss_pred hcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccchhhHHHh
Confidence 888888888877542 233444554 59999999999999876 45566799999999999986
Q ss_pred CCCh-HHHHHHhhhcCC------------------------CceEEEEeccCcHH-HHHHHHHHhCCCeEEEeccccccc
Q 003910 387 LGFE-PQIRSIVGQIRP------------------------DRQTLLFSATMPRK-VEKLAREILSDPVRVTVGEVGMAN 440 (787)
Q Consensus 387 ~~f~-~~i~~il~~~~~------------------------~~q~ll~SAT~~~~-v~~l~~~~l~~p~~i~v~~~~~~~ 440 (787)
+||. ..+..++..++. .+|+++||||+++. +.. .++.++..+.++......
T Consensus 227 lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~~~~~~ 303 (1176)
T PRK09401 227 LGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVGSPVFYL 303 (1176)
T ss_pred CCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEecCccccc
Confidence 6785 678777777654 68999999999764 332 344556667776666666
Q ss_pred ccceEEEEecCCCcchHHHHHHhcCCcCCCCCEEEEeccccc---HHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhh
Q 003910 441 EDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTT---VDEIESQLAQKGFKAAALHGDKDQASRMEILQKFK 517 (787)
Q Consensus 441 ~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~---a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~ 517 (787)
.+|.+.+..+. .+...|..++... ..++||||+++.. ++.|+++|...|+++..+||+| .+.++.|+
T Consensus 304 rnI~~~yi~~~---~k~~~L~~ll~~l--~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~ 373 (1176)
T PRK09401 304 RNIVDSYIVDE---DSVEKLVELVKRL--GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFE 373 (1176)
T ss_pred CCceEEEEEcc---cHHHHHHHHHHhc--CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHH
Confidence 78888776554 5666677766544 3589999999888 9999999999999999999999 23469999
Q ss_pred cCCccEEEE----ehhhhccCCCCC-ccEEEEecCCC------CHHHHHHHhhccCCC
Q 003910 518 SGVYHVLIA----TDVAARGLDIKS-IKSVVNFDIAR------DMDMHVHRIGRTGRA 564 (787)
Q Consensus 518 ~G~~~VLVa----T~v~~rGlDip~-v~~VI~~d~p~------s~~~y~QriGR~gR~ 564 (787)
+|+++|||| |++++||||+|+ |++||||+.|. ..+.|.||+||+...
T Consensus 374 ~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 374 EGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred CCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHhh
Confidence 999999999 699999999999 89999999998 678899999999754
No 52
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=2.4e-38 Score=367.47 Aligned_cols=311 Identities=18% Similarity=0.218 Sum_probs=234.2
Q ss_pred HHHHHHHHHHHcCCCEEEEccCCCchhHH---------HHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHH
Q 003910 250 SIQCQALPIILSGRDIIGIAKTGSGKTAA---------FVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKK 320 (787)
Q Consensus 250 p~Q~~ai~~il~grdvii~a~TGsGKTla---------~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~ 320 (787)
.+|.++++.+++++++|++|+||||||.+ |++|.+..+.... .....+.++|++|||+||.|+...+.+
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~--~~~~~~~ilvt~PrreLa~qi~~~i~~ 244 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID--PNFIERPIVLSLPRVALVRLHSITLLK 244 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc--cccCCcEEEEECcHHHHHHHHHHHHHH
Confidence 58999999999999999999999999987 3334444332110 012356799999999999999999887
Q ss_pred Hhhh---cCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHh
Q 003910 321 FAKS---HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIV 397 (787)
Q Consensus 321 ~~~~---~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il 397 (787)
.... .++.+.+.+||... .+........+|||+|++.. ...|..+++|||||||++...+ +.+..++
T Consensus 245 ~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~-------l~~L~~v~~VVIDEaHEr~~~~--DllL~ll 314 (675)
T PHA02653 245 SLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLT-------LNKLFDYGTVIIDEVHEHDQIG--DIIIAVA 314 (675)
T ss_pred HhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCccc-------ccccccCCEEEccccccCccch--hHHHHHH
Confidence 6543 35677888999873 22222333689999997521 1257889999999999987764 4556666
Q ss_pred hhcC-CCceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCC---------CcchHHHHHHhcCCc
Q 003910 398 GQIR-PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPS---------DAEKLPWLLEKLPGM 467 (787)
Q Consensus 398 ~~~~-~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~---------~~~k~~~L~~~L~~~ 467 (787)
..+. ..+|+++||||++.+++.+ ..++.+|..+.+.. .....|.+.+..... ...+ ..++..+...
T Consensus 315 k~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~g--rt~~pV~~~yi~~~~~~~~~~~y~~~~k-~~~l~~L~~~ 390 (675)
T PHA02653 315 RKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPG--GTLFPISEVYVKNKYNPKNKRAYIEEEK-KNIVTALKKY 390 (675)
T ss_pred HHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCC--CcCCCeEEEEeecCcccccchhhhHHHH-HHHHHHHHHh
Confidence 5443 3469999999999888776 57888998887743 223455554432211 0111 1223333221
Q ss_pred --CCCCCEEEEecccccHHHHHHHHHHc--CCceeeccCCCCHHHHHHHHHHh-hcCCccEEEEehhhhccCCCCCccEE
Q 003910 468 --IDDGDVLVFASKKTTVDEIESQLAQK--GFKAAALHGDKDQASRMEILQKF-KSGVYHVLIATDVAARGLDIKSIKSV 542 (787)
Q Consensus 468 --~~~~kvLVF~~s~~~a~~l~~~L~~~--g~~v~~lhg~~~~~eR~~~l~~F-~~G~~~VLVaT~v~~rGlDip~v~~V 542 (787)
...+.+||||+++.+++.+++.|... ++.+..|||++++. +++++.| ++|+.+|||||++++||||||+|++|
T Consensus 391 ~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~V 468 (675)
T PHA02653 391 TPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHV 468 (675)
T ss_pred hcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEE
Confidence 13468999999999999999999887 79999999999985 5677787 68999999999999999999999999
Q ss_pred EEec---CCC---------CHHHHHHHhhccCCCCCCCcEEEEEEccccH
Q 003910 543 VNFD---IAR---------DMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (787)
Q Consensus 543 I~~d---~p~---------s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~ 580 (787)
|+++ .|. +...|+||+|||||.. +|.||.|+++.+.
T Consensus 469 ID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~~--~G~c~rLyt~~~~ 516 (675)
T PHA02653 469 YDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRVS--PGTYVYFYDLDLL 516 (675)
T ss_pred EECCCccCCCcccCcccccCHHHHHHhccCcCCCC--CCeEEEEECHHHh
Confidence 9998 555 8889999999999994 7999999998774
No 53
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=6.7e-38 Score=363.28 Aligned_cols=339 Identities=23% Similarity=0.315 Sum_probs=271.6
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHH
Q 003910 231 GFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTREL 310 (787)
Q Consensus 231 ~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreL 310 (787)
-|++.+.+.++.. |..|||.|.+|||.|.+|+|+|++||||||||++++||++..+..........+-.+|+|.|.++|
T Consensus 7 ~l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkAL 85 (814)
T COG1201 7 ILDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKAL 85 (814)
T ss_pred hcCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHH
Confidence 3788899999888 999999999999999999999999999999999999999999988743334457789999999999
Q ss_pred HHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhc--cccccceeEEEEechhhhhcCC
Q 003910 311 AHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK--ALTMSRVTYLVLDEADRMFDLG 388 (787)
Q Consensus 311 a~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~--~~~l~~i~~lViDEah~m~~~~ 388 (787)
...+...+..++...|+.+.+-+|..+..+..+.+++-+||+|+||+.|.-++... .-.|.++.+|||||.|.+.+..
T Consensus 86 n~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sK 165 (814)
T COG1201 86 NNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESK 165 (814)
T ss_pred HHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccc
Confidence 99999999999999999999999988888777777788999999999998888653 2348899999999999998766
Q ss_pred ChHHHHHHhhh---cCCCceEEEEeccCcHHHHHHHHHHhCC--CeEEEecccccccccceEEEEecCCC--------cc
Q 003910 389 FEPQIRSIVGQ---IRPDRQTLLFSATMPRKVEKLAREILSD--PVRVTVGEVGMANEDITQVVHVIPSD--------AE 455 (787)
Q Consensus 389 f~~~i~~il~~---~~~~~q~ll~SAT~~~~v~~l~~~~l~~--p~~i~v~~~~~~~~~i~q~~~~~~~~--------~~ 455 (787)
...++..-+.+ +.++.|.|++|||.. +...+++++... +..+... ......++. +...... ..
T Consensus 166 RG~~Lsl~LeRL~~l~~~~qRIGLSATV~-~~~~varfL~g~~~~~~Iv~~-~~~k~~~i~--v~~p~~~~~~~~~~~~~ 241 (814)
T COG1201 166 RGVQLALSLERLRELAGDFQRIGLSATVG-PPEEVAKFLVGFGDPCEIVDV-SAAKKLEIK--VISPVEDLIYDEELWAA 241 (814)
T ss_pred cchhhhhhHHHHHhhCcccEEEeehhccC-CHHHHHHHhcCCCCceEEEEc-ccCCcceEE--EEecCCccccccchhHH
Confidence 55555443333 234889999999986 345666666655 3333221 111111121 1111111 11
Q ss_pred hHHHHHHhcCCcCCCCCEEEEecccccHHHHHHHHHHcC-CceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccC
Q 003910 456 KLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKG-FKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGL 534 (787)
Q Consensus 456 k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g-~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGl 534 (787)
....+.+++.+ ...+|||+||+..++.++..|++.+ ..+..+||+++..+|..+.+.|++|+.+++|||+.++-||
T Consensus 242 ~~~~i~~~v~~---~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGI 318 (814)
T COG1201 242 LYERIAELVKK---HRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGI 318 (814)
T ss_pred HHHHHHHHHhh---cCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhcc
Confidence 23333344432 3489999999999999999999987 8999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEcc
Q 003910 535 DIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ 577 (787)
Q Consensus 535 Dip~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~ 577 (787)
|+-+++.||+|..|.++...+||+||+|+.-......+.+...
T Consensus 319 DiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 319 DIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred ccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 9999999999999999999999999999765344555555444
No 54
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=9.8e-38 Score=382.77 Aligned_cols=303 Identities=21% Similarity=0.273 Sum_probs=225.9
Q ss_pred EEccCCCchhHHHHHHHHHHHhcCccc-----ccCCCCEEEEEcCcHHHHHHHHHHHHHHhh------------hcCceE
Q 003910 267 GIAKTGSGKTAAFVLPMIVHIMDQPEL-----QKEEGPIGVICAPTRELAHQIYLETKKFAK------------SHGIRV 329 (787)
Q Consensus 267 i~a~TGsGKTla~llp~l~~l~~~~~~-----~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~------------~~~i~v 329 (787)
|++|||||||++|+||+|..++.++.. ....+.++|||+|+++|+.|+++.++..+. ..++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999999999865311 123468999999999999999998875321 246889
Q ss_pred EEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhc-cccccceeEEEEechhhhhcCCChH----HHHHHhhhcCCCc
Q 003910 330 SAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK-ALTMSRVTYLVLDEADRMFDLGFEP----QIRSIVGQIRPDR 404 (787)
Q Consensus 330 ~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~-~~~l~~i~~lViDEah~m~~~~f~~----~i~~il~~~~~~~ 404 (787)
...+|+.+..++.+.+.+.++|||+||++|..++.++ ...|+++++|||||+|.|.+..+.. .+..+...++.+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 9999999888877777778999999999999887643 3468999999999999998765444 4445545556778
Q ss_pred eEEEEeccCcHHHHHHHHHHhC-CCeEEEecccccccccceEEEEecCCCc-------------------chHHHH-HHh
Q 003910 405 QTLLFSATMPRKVEKLAREILS-DPVRVTVGEVGMANEDITQVVHVIPSDA-------------------EKLPWL-LEK 463 (787)
Q Consensus 405 q~ll~SAT~~~~v~~l~~~~l~-~p~~i~v~~~~~~~~~i~q~~~~~~~~~-------------------~k~~~L-~~~ 463 (787)
|+|+||||+++ .+++++++.. .|+.+.. ........+. .+..+.... .....+ ..+
T Consensus 161 QrIgLSATI~n-~eevA~~L~g~~pv~Iv~-~~~~r~~~l~-v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~i 237 (1490)
T PRK09751 161 QRIGLSATVRS-ASDVAAFLGGDRPVTVVN-PPAMRHPQIR-IVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGI 237 (1490)
T ss_pred eEEEEEeeCCC-HHHHHHHhcCCCCEEEEC-CCCCcccceE-EEEecCchhhccccccccccccchhhhhhhhHHHHHHH
Confidence 99999999987 4667765543 3555532 1111111222 111111100 000011 112
Q ss_pred cCCcCCCCCEEEEecccccHHHHHHHHHHcC---------------------------------CceeeccCCCCHHHHH
Q 003910 464 LPGMIDDGDVLVFASKKTTVDEIESQLAQKG---------------------------------FKAAALHGDKDQASRM 510 (787)
Q Consensus 464 L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g---------------------------------~~v~~lhg~~~~~eR~ 510 (787)
+.......++|||||++..|+.++..|++.. +.+..+||++++++|.
T Consensus 238 l~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~ 317 (1490)
T PRK09751 238 LDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRA 317 (1490)
T ss_pred HHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHH
Confidence 2222245689999999999999999997631 1257899999999999
Q ss_pred HHHHHhhcCCccEEEEehhhhccCCCCCccEEEEecCCCCHHHHHHHhhccCCCCCCCcEEE
Q 003910 511 EILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAY 572 (787)
Q Consensus 511 ~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i 572 (787)
.+++.|++|+++|||||+.+++||||+.+++||+|+.|.++.+|+||+||+||.....+.++
T Consensus 318 ~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gl 379 (1490)
T PRK09751 318 ITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGL 379 (1490)
T ss_pred HHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEE
Confidence 99999999999999999999999999999999999999999999999999999642233444
No 55
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=1.9e-38 Score=330.45 Aligned_cols=279 Identities=34% Similarity=0.507 Sum_probs=230.7
Q ss_pred CEEEEEcCcHHHHHHHHHHHHHHhhhc---CceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeE
Q 003910 299 PIGVICAPTRELAHQIYLETKKFAKSH---GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTY 375 (787)
Q Consensus 299 p~vLIl~PtreLa~Qi~~~~~~~~~~~---~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~ 375 (787)
|.+||+-|.|+|+.|.++.+++|-... .++..++.||.....|...+..+.+|||+||+||.+.+....+.|..+.+
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crF 366 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRF 366 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEE
Confidence 569999999999999999777775443 46777899999999999999999999999999999999999999999999
Q ss_pred EEEechhhhhcCCChHHHHHHhhhcCC------CceEEEEeccCc-HHHHHHHHHHhCCCeEEEecccccccccceEEEE
Q 003910 376 LVLDEADRMFDLGFEPQIRSIVGQIRP------DRQTLLFSATMP-RKVEKLAREILSDPVRVTVGEVGMANEDITQVVH 448 (787)
Q Consensus 376 lViDEah~m~~~~f~~~i~~il~~~~~------~~q~ll~SAT~~-~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~ 448 (787)
+|+|||+.++..++...|..+..+++. ..|.++.|||+. -++..+..+++.-|..+.........+.+.+.+.
T Consensus 367 lvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv~ 446 (725)
T KOG0349|consen 367 LVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVVK 446 (725)
T ss_pred EEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhcccee
Confidence 999999999999999999998888863 468999999974 3566677788888888877665555555544443
Q ss_pred ecCCC-cchHHHH----------------------------HHhcCCc--------CCCCCEEEEecccccHHHHHHHHH
Q 003910 449 VIPSD-AEKLPWL----------------------------LEKLPGM--------IDDGDVLVFASKKTTVDEIESQLA 491 (787)
Q Consensus 449 ~~~~~-~~k~~~L----------------------------~~~L~~~--------~~~~kvLVF~~s~~~a~~l~~~L~ 491 (787)
.+... ...+..| ..+|+.. ..-.+.||||.++.+|+.|..+|.
T Consensus 447 lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~ 526 (725)
T KOG0349|consen 447 LVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMN 526 (725)
T ss_pred ecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHH
Confidence 33211 1111111 1111110 012479999999999999999999
Q ss_pred HcC---CceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEEEecCCCCHHHHHHHhhccCCCCCCC
Q 003910 492 QKG---FKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKD 568 (787)
Q Consensus 492 ~~g---~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~ 568 (787)
+++ |.|+++||+..+.+|...++.|+.+.+++||||++++|||||.++-.|||..+|..-..|+|||||+||+. +.
T Consensus 527 qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgrae-rm 605 (725)
T KOG0349|consen 527 QKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAE-RM 605 (725)
T ss_pred HcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhh-hc
Confidence 874 78999999999999999999999999999999999999999999999999999999999999999999998 68
Q ss_pred cEEEEEEccc
Q 003910 569 GTAYTLVTQK 578 (787)
Q Consensus 569 G~~i~l~~~~ 578 (787)
|.+|.|+...
T Consensus 606 glaislvat~ 615 (725)
T KOG0349|consen 606 GLAISLVATV 615 (725)
T ss_pred ceeEEEeecc
Confidence 9999987543
No 56
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=2.8e-37 Score=385.23 Aligned_cols=328 Identities=21% Similarity=0.259 Sum_probs=253.1
Q ss_pred HHHHHHH-CCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHH
Q 003910 236 LMHAISK-QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQI 314 (787)
Q Consensus 236 l~~~l~~-~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi 314 (787)
+.+.+++ .|| .||++|+++++.+++|+|++++||||+|||++++++++... ..++++|||+||++|+.|+
T Consensus 68 ~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~--------~~g~~aLVl~PTreLa~Qi 138 (1638)
T PRK14701 68 FEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLA--------LKGKKCYIILPTTLLVKQT 138 (1638)
T ss_pred HHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHH--------hcCCeEEEEECHHHHHHHH
Confidence 4455655 688 69999999999999999999999999999996565555432 2367899999999999999
Q ss_pred HHHHHHHhhhc--CceEEEEECCCChHHHH---HHHhcC-CcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhc--
Q 003910 315 YLETKKFAKSH--GIRVSAVYGGMSKLDQF---KELKAG-CEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFD-- 386 (787)
Q Consensus 315 ~~~~~~~~~~~--~i~v~~~~gg~~~~~~~---~~l~~~-~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~-- 386 (787)
++.++.++... ++++.+++|+.+..++. ..+..+ ++|||+||++|.+.+... ....+++|||||||+|++
T Consensus 139 ~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~~~~i~~iVVDEAD~ml~~~ 216 (1638)
T PRK14701 139 VEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--KHLKFDFIFVDDVDAFLKAS 216 (1638)
T ss_pred HHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--hhCCCCEEEEECceeccccc
Confidence 99999998765 46778888998876653 345554 899999999998876532 226789999999999986
Q ss_pred ---------CCChHHHHH----Hhh----------------------hcCCCce-EEEEeccCcHHHHHHHHHHhCCCeE
Q 003910 387 ---------LGFEPQIRS----IVG----------------------QIRPDRQ-TLLFSATMPRKVEKLAREILSDPVR 430 (787)
Q Consensus 387 ---------~~f~~~i~~----il~----------------------~~~~~~q-~ll~SAT~~~~v~~l~~~~l~~p~~ 430 (787)
+||.+++.. ++. .++..+| ++++|||+++.. ....++.++..
T Consensus 217 knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~--~~~~l~~~~l~ 294 (1638)
T PRK14701 217 KNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKG--DRVKLYRELLG 294 (1638)
T ss_pred cccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchh--HHHHHhhcCeE
Confidence 588887764 332 2344555 677999998531 12244567777
Q ss_pred EEecccccccccceEEEEecCCCcchHHHHHHhcCCcCCCCCEEEEeccccc---HHHHHHHHHHcCCceeeccCCCCHH
Q 003910 431 VTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTT---VDEIESQLAQKGFKAAALHGDKDQA 507 (787)
Q Consensus 431 i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~---a~~l~~~L~~~g~~v~~lhg~~~~~ 507 (787)
+.++.......++.+.+..+.. ..+ ..|+.++... ..++||||+++.. |+.|++.|...|+++..+||+
T Consensus 295 f~v~~~~~~lr~i~~~yi~~~~-~~k-~~L~~ll~~~--g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~---- 366 (1638)
T PRK14701 295 FEVGSGRSALRNIVDVYLNPEK-IIK-EHVRELLKKL--GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK---- 366 (1638)
T ss_pred EEecCCCCCCCCcEEEEEECCH-HHH-HHHHHHHHhC--CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch----
Confidence 8887776667778887765532 223 4566666554 3589999999876 589999999999999999995
Q ss_pred HHHHHHHHhhcCCccEEEEe----hhhhccCCCCC-ccEEEEecCCC---CHHHHHHHh-------------hccCCCCC
Q 003910 508 SRMEILQKFKSGVYHVLIAT----DVAARGLDIKS-IKSVVNFDIAR---DMDMHVHRI-------------GRTGRAGD 566 (787)
Q Consensus 508 eR~~~l~~F~~G~~~VLVaT----~v~~rGlDip~-v~~VI~~d~p~---s~~~y~Qri-------------GR~gR~G~ 566 (787)
|..+++.|++|+++||||| ++++||||+|+ |++|||||+|. +++.|.|-. ||++|.|
T Consensus 367 -R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g- 444 (1638)
T PRK14701 367 -NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEG- 444 (1638)
T ss_pred -HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccC-
Confidence 8899999999999999999 58999999999 99999999999 887776655 9999998
Q ss_pred CCcEEEEEEccccHHHHHHH
Q 003910 567 KDGTAYTLVTQKEARFAGEL 586 (787)
Q Consensus 567 ~~G~~i~l~~~~d~~~~~~l 586 (787)
....++..+...+..++..+
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~ 464 (1638)
T PRK14701 445 IPIEGVLDVFPEDVEFLRSI 464 (1638)
T ss_pred CcchhHHHhHHHHHHHHHHH
Confidence 45666644444444444333
No 57
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=3.9e-37 Score=365.44 Aligned_cols=304 Identities=21% Similarity=0.275 Sum_probs=235.9
Q ss_pred HHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHh-hhcCceEE
Q 003910 252 QCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA-KSHGIRVS 330 (787)
Q Consensus 252 Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~-~~~~i~v~ 330 (787)
-.+.+..+.+++++|++|+||||||++|.++++.... .++++||+.|||++|.|+++.+.+.. ...+..|.
T Consensus 7 ~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~--------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VG 78 (819)
T TIGR01970 7 LPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG--------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVG 78 (819)
T ss_pred HHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc--------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEE
Confidence 3455677778899999999999999999999988752 24579999999999999999886443 33455666
Q ss_pred EEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechh-hhhcCCChHHH-HHHhhhcCCCceEEE
Q 003910 331 AVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD-RMFDLGFEPQI-RSIVGQIRPDRQTLL 408 (787)
Q Consensus 331 ~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah-~m~~~~f~~~i-~~il~~~~~~~q~ll 408 (787)
+.+.+... +....+|+|+||++|++++.. ...|..+++|||||+| ++++.++.-.+ ..+...++++.|+|+
T Consensus 79 y~vr~~~~------~s~~t~I~v~T~G~Llr~l~~-d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIl 151 (819)
T TIGR01970 79 YRVRGENK------VSRRTRLEVVTEGILTRMIQD-DPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILA 151 (819)
T ss_pred EEEccccc------cCCCCcEEEECCcHHHHHHhh-CcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEE
Confidence 65554332 234579999999999998876 4579999999999999 68887765433 455566788999999
Q ss_pred EeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcchH-----HHHHHhcCCcCCCCCEEEEecccccH
Q 003910 409 FSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKL-----PWLLEKLPGMIDDGDVLVFASKKTTV 483 (787)
Q Consensus 409 ~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~-----~~L~~~L~~~~~~~kvLVF~~s~~~a 483 (787)
||||++... +..|+.++..+.+... ...+.+.+..... ..++ ..+..++.. ..+.+||||+++.++
T Consensus 152 mSATl~~~~---l~~~l~~~~vI~~~gr---~~pVe~~y~~~~~-~~~~~~~v~~~l~~~l~~--~~g~iLVFlpg~~eI 222 (819)
T TIGR01970 152 MSATLDGER---LSSLLPDAPVVESEGR---SFPVEIRYLPLRG-DQRLEDAVSRAVEHALAS--ETGSILVFLPGQAEI 222 (819)
T ss_pred EeCCCCHHH---HHHHcCCCcEEEecCc---ceeeeeEEeecch-hhhHHHHHHHHHHHHHHh--cCCcEEEEECCHHHH
Confidence 999998653 4667776555554322 1234444433322 2222 122333332 357999999999999
Q ss_pred HHHHHHHHH---cCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEEEecCCCC----------
Q 003910 484 DEIESQLAQ---KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARD---------- 550 (787)
Q Consensus 484 ~~l~~~L~~---~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~~d~p~s---------- 550 (787)
+.+++.|.. .++.+..|||+|++.+|..+++.|++|..+|||||+++++|||||+|++||+++.|..
T Consensus 223 ~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~ 302 (819)
T TIGR01970 223 RRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGIT 302 (819)
T ss_pred HHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCc
Confidence 999999987 4789999999999999999999999999999999999999999999999999998752
Q ss_pred --------HHHHHHHhhccCCCCCCCcEEEEEEccccHH
Q 003910 551 --------MDMHVHRIGRTGRAGDKDGTAYTLVTQKEAR 581 (787)
Q Consensus 551 --------~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~ 581 (787)
..+|+||.||+||.. +|.||.|++..+..
T Consensus 303 ~L~~~~iSkasa~QR~GRAGR~~--~G~cyrL~t~~~~~ 339 (819)
T TIGR01970 303 RLETVRISQASATQRAGRAGRLE--PGVCYRLWSEEQHQ 339 (819)
T ss_pred eeeEEEECHHHHHhhhhhcCCCC--CCEEEEeCCHHHHH
Confidence 346899999999984 79999999876543
No 58
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=8.6e-37 Score=342.60 Aligned_cols=333 Identities=22% Similarity=0.383 Sum_probs=268.1
Q ss_pred HHHHH-CCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHH
Q 003910 238 HAISK-QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYL 316 (787)
Q Consensus 238 ~~l~~-~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~ 316 (787)
..|+. .||..++|-|.++|..+++++|+|+..|||.||+++|.+|++.. .| .+|||.|..+|....++
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~----------~G-~TLVVSPLiSLM~DQV~ 75 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL----------EG-LTLVVSPLISLMKDQVD 75 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc----------CC-CEEEECchHHHHHHHHH
Confidence 34444 38999999999999999999999999999999999999999754 23 58999999999998888
Q ss_pred HHHHHhhhcCceEEEEECCCChHHHHH---HHhcC-CcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCC--Ch
Q 003910 317 ETKKFAKSHGIRVSAVYGGMSKLDQFK---ELKAG-CEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG--FE 390 (787)
Q Consensus 317 ~~~~~~~~~~i~v~~~~gg~~~~~~~~---~l~~~-~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~--f~ 390 (787)
.++.. |+.+.++.+..+..+... .+..+ .+++..+|++|..-.-.+.+.-..+.++||||||++.+|| |.
T Consensus 76 ~l~~~----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFR 151 (590)
T COG0514 76 QLEAA----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFR 151 (590)
T ss_pred HHHHc----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccC
Confidence 88876 899999888877655432 33333 8999999999976433334445678999999999999997 88
Q ss_pred HHHHHHhhhc--CCCceEEEEeccCcHHHHHHHHHHhCCCe-EEEecccccccccceEEEEecCCCcchHHHHHHhcCCc
Q 003910 391 PQIRSIVGQI--RPDRQTLLFSATMPRKVEKLAREILSDPV-RVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGM 467 (787)
Q Consensus 391 ~~i~~il~~~--~~~~q~ll~SAT~~~~v~~l~~~~l~~p~-~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~ 467 (787)
+.+..+-... -++..++.+|||.++.+..-+...+..-. .+.+. ....++|...+........++.++.+.+.
T Consensus 152 P~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~--sfdRpNi~~~v~~~~~~~~q~~fi~~~~~-- 227 (590)
T COG0514 152 PDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRG--SFDRPNLALKVVEKGEPSDQLAFLATVLP-- 227 (590)
T ss_pred HhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEe--cCCCchhhhhhhhcccHHHHHHHHHhhcc--
Confidence 8877654332 23788999999999988877776665322 22222 23344454444433333444444444222
Q ss_pred CCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEEEecC
Q 003910 468 IDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDI 547 (787)
Q Consensus 468 ~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~~d~ 547 (787)
...+..||||.|+..++.++..|...|+.+..+|++|+..+|..+.+.|..++++|+|||.++++|||-|+|++|||||+
T Consensus 228 ~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~l 307 (590)
T COG0514 228 QLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDL 307 (590)
T ss_pred ccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecC
Confidence 23557899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHhhccCCCCCCCcEEEEEEccccHHHHHHHHHHH
Q 003910 548 ARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSL 590 (787)
Q Consensus 548 p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~l 590 (787)
|.+++.|.|-+||+||.| .+..|++|+.+.|......+++..
T Consensus 308 P~s~EsYyQE~GRAGRDG-~~a~aill~~~~D~~~~~~~i~~~ 349 (590)
T COG0514 308 PGSIESYYQETGRAGRDG-LPAEAILLYSPEDIRWQRYLIEQS 349 (590)
T ss_pred CCCHHHHHHHHhhccCCC-CcceEEEeeccccHHHHHHHHHhh
Confidence 999999999999999999 789999999999998877666553
No 59
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.2e-36 Score=347.99 Aligned_cols=317 Identities=20% Similarity=0.247 Sum_probs=245.7
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhc
Q 003910 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (787)
Q Consensus 246 ~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~ 325 (787)
..|+|+|..+++.++.|+ |+.+.||+|||++|++|++.+++ .++.++||+||++||.|.++++.+++..+
T Consensus 102 ~~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al--------~G~~v~VvTptreLA~qdae~~~~l~~~l 171 (656)
T PRK12898 102 QRHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAAL--------AGLPVHVITVNDYLAERDAELMRPLYEAL 171 (656)
T ss_pred CCCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhh--------cCCeEEEEcCcHHHHHHHHHHHHHHHhhc
Confidence 469999999999999999 99999999999999999998863 36789999999999999999999999999
Q ss_pred CceEEEEECCCChHHHHHHHhcCCcEEEeCHHHH-HHHHHhcc-------------------------ccccceeEEEEe
Q 003910 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRL-IDMLKMKA-------------------------LTMSRVTYLVLD 379 (787)
Q Consensus 326 ~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L-~~~l~~~~-------------------------~~l~~i~~lViD 379 (787)
++++.+++||.+. +.+.+..++||+++|..-| .++|..+. .....+.++|||
T Consensus 172 Glsv~~i~gg~~~--~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvD 249 (656)
T PRK12898 172 GLTVGCVVEDQSP--DERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVD 249 (656)
T ss_pred CCEEEEEeCCCCH--HHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEee
Confidence 9999999999764 3455566899999999887 44443221 123568899999
Q ss_pred chhhhh-cC----------------------------------CCh---------------HHHHHHhhh----------
Q 003910 380 EADRMF-DL----------------------------------GFE---------------PQIRSIVGQ---------- 399 (787)
Q Consensus 380 Eah~m~-~~----------------------------------~f~---------------~~i~~il~~---------- 399 (787)
|+|.|+ |. .|. ..+..++..
T Consensus 250 EvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~ 329 (656)
T PRK12898 250 EADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVR 329 (656)
T ss_pred cccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchH
Confidence 999762 10 000 000011000
Q ss_pred --------c------CC-------------------------------------------------------------Cc
Q 003910 400 --------I------RP-------------------------------------------------------------DR 404 (787)
Q Consensus 400 --------~------~~-------------------------------------------------------------~~ 404 (787)
+ .. -.
T Consensus 330 ~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~ 409 (656)
T PRK12898 330 REELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYL 409 (656)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhH
Confidence 0 00 02
Q ss_pred eEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcchHHHHHHhcCCcC-CCCCEEEEecccccH
Q 003910 405 QTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTV 483 (787)
Q Consensus 405 q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a 483 (787)
++.+||||.+....++...|..+++.|-..... .....+.+ +......|+..|...+.... ...++||||+++..+
T Consensus 410 kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~--~r~~~~~~-v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~s 486 (656)
T PRK12898 410 RLAGMTGTAREVAGELWSVYGLPVVRIPTNRPS--QRRHLPDE-VFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAAS 486 (656)
T ss_pred HHhcccCcChHHHHHHHHHHCCCeEEeCCCCCc--cceecCCE-EEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHH
Confidence 567899999888888888888777655432222 11122223 33345678888888876543 245899999999999
Q ss_pred HHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCC---Ccc-----EEEEecCCCCHHHHH
Q 003910 484 DEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIK---SIK-----SVVNFDIARDMDMHV 555 (787)
Q Consensus 484 ~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip---~v~-----~VI~~d~p~s~~~y~ 555 (787)
+.|+..|.+.++++..|||.+. +|+..+..|+.+...|||||++++||+||+ +|. +||+|++|.+...|+
T Consensus 487 e~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~ 564 (656)
T PRK12898 487 ERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDR 564 (656)
T ss_pred HHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHH
Confidence 9999999999999999999865 455556666666668999999999999999 666 999999999999999
Q ss_pred HHhhccCCCCCCCcEEEEEEccccH
Q 003910 556 HRIGRTGRAGDKDGTAYTLVTQKEA 580 (787)
Q Consensus 556 QriGR~gR~G~~~G~~i~l~~~~d~ 580 (787)
||+|||||.| .+|.+++|++.+|.
T Consensus 565 hr~GRTGRqG-~~G~s~~~is~eD~ 588 (656)
T PRK12898 565 QLAGRCGRQG-DPGSYEAILSLEDD 588 (656)
T ss_pred HhcccccCCC-CCeEEEEEechhHH
Confidence 9999999999 68999999998774
No 60
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=6.8e-37 Score=364.24 Aligned_cols=302 Identities=21% Similarity=0.286 Sum_probs=233.8
Q ss_pred HHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHh-hhcCceEEE
Q 003910 253 CQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA-KSHGIRVSA 331 (787)
Q Consensus 253 ~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~-~~~~i~v~~ 331 (787)
.+.+..+.+++++|++|+||||||++|.++++.... ...++||++|||++|.|+++.+.+.. ...+..|.+
T Consensus 11 ~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~--------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy 82 (812)
T PRK11664 11 PELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG--------INGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGY 82 (812)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC--------cCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEE
Confidence 455677778899999999999999999998886531 12479999999999999999886543 345667777
Q ss_pred EECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhh-hhcCCCh-HHHHHHhhhcCCCceEEEE
Q 003910 332 VYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR-MFDLGFE-PQIRSIVGQIRPDRQTLLF 409 (787)
Q Consensus 332 ~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~-m~~~~f~-~~i~~il~~~~~~~q~ll~ 409 (787)
.+++..... ....|+|+||++|++++.. ...|..+++|||||+|. +++.++. ..+..++..++++.|+|+|
T Consensus 83 ~vr~~~~~~------~~t~I~v~T~G~Llr~l~~-d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilm 155 (812)
T PRK11664 83 RMRAESKVG------PNTRLEVVTEGILTRMIQR-DPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIM 155 (812)
T ss_pred EecCccccC------CCCcEEEEChhHHHHHHhh-CCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEE
Confidence 777654322 2468999999999998875 45799999999999995 5555432 2344566777889999999
Q ss_pred eccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcchHH-----HHHHhcCCcCCCCCEEEEecccccHH
Q 003910 410 SATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLP-----WLLEKLPGMIDDGDVLVFASKKTTVD 484 (787)
Q Consensus 410 SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~-----~L~~~L~~~~~~~kvLVF~~s~~~a~ 484 (787)
|||++.. .+..|+.++..+.+... ...+.+.+..+.. ..++. .+...+.. ..+.+||||+++.+++
T Consensus 156 SATl~~~---~l~~~~~~~~~I~~~gr---~~pV~~~y~~~~~-~~~~~~~v~~~l~~~l~~--~~g~iLVFlpg~~ei~ 226 (812)
T PRK11664 156 SATLDND---RLQQLLPDAPVIVSEGR---SFPVERRYQPLPA-HQRFDEAVARATAELLRQ--ESGSLLLFLPGVGEIQ 226 (812)
T ss_pred ecCCCHH---HHHHhcCCCCEEEecCc---cccceEEeccCch-hhhHHHHHHHHHHHHHHh--CCCCEEEEcCCHHHHH
Confidence 9999865 24567766555544322 2235555443332 22322 23333332 3579999999999999
Q ss_pred HHHHHHHH---cCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEEEecCCCC-----------
Q 003910 485 EIESQLAQ---KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARD----------- 550 (787)
Q Consensus 485 ~l~~~L~~---~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~~d~p~s----------- 550 (787)
.+++.|.. .++.+..+||++++.+|..++..|++|+.+|||||+++++||||++|++||+++.+..
T Consensus 227 ~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~ 306 (812)
T PRK11664 227 RVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTR 306 (812)
T ss_pred HHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcce
Confidence 99999987 5788999999999999999999999999999999999999999999999999777653
Q ss_pred -------HHHHHHHhhccCCCCCCCcEEEEEEccccH
Q 003910 551 -------MDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (787)
Q Consensus 551 -------~~~y~QriGR~gR~G~~~G~~i~l~~~~d~ 580 (787)
-.+|+||.||+||.+ +|.||.|+++.+.
T Consensus 307 L~~~~iSkasa~QR~GRaGR~~--~G~cyrL~t~~~~ 341 (812)
T PRK11664 307 LVTQRISQASMTQRAGRAGRLE--PGICLHLYSKEQA 341 (812)
T ss_pred eEEEeechhhhhhhccccCCCC--CcEEEEecCHHHH
Confidence 357999999999985 7999999987654
No 61
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=7.1e-36 Score=320.70 Aligned_cols=330 Identities=24% Similarity=0.271 Sum_probs=242.9
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhh
Q 003910 244 GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (787)
Q Consensus 244 g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~ 323 (787)
+..+++.||.......+.+ |+|++.|||.|||+++++-+..++.+. .+ ++|+|+||+-|+.|.++.|.+++.
T Consensus 12 ~~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~------~~-kvlfLAPTKPLV~Qh~~~~~~v~~ 83 (542)
T COG1111 12 NTIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWF------GG-KVLFLAPTKPLVLQHAEFCRKVTG 83 (542)
T ss_pred ccccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhc------CC-eEEEecCCchHHHHHHHHHHHHhC
Confidence 3457899999998887775 999999999999999888888887554 23 799999999999999999999986
Q ss_pred hcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHhhhcCCC
Q 003910 324 SHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPD 403 (787)
Q Consensus 324 ~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~ 403 (787)
...-.++.++|.....+ ...++....|+|+||+.+.+.+..+.+++.++.+||+|||||-...--...+-+.+-....+
T Consensus 84 ip~~~i~~ltGev~p~~-R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~ 162 (542)
T COG1111 84 IPEDEIAALTGEVRPEE-REELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKN 162 (542)
T ss_pred CChhheeeecCCCChHH-HHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhccC
Confidence 55556777777665543 45566678999999999999999999999999999999999865432222333333334567
Q ss_pred ceEEEEeccCcHHHH---HHHHHHhCCCeEEEecccc-------------------------------------------
Q 003910 404 RQTLLFSATMPRKVE---KLAREILSDPVRVTVGEVG------------------------------------------- 437 (787)
Q Consensus 404 ~q~ll~SAT~~~~v~---~l~~~~l~~p~~i~v~~~~------------------------------------------- 437 (787)
+.+|++|||+-...+ +.+..+.-..+.+......
T Consensus 163 ~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~ 242 (542)
T COG1111 163 PLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKEL 242 (542)
T ss_pred ceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 789999999843322 2211111110000000000
Q ss_pred --------cc-------c-------cc----ce---------------------E-------E-----------------
Q 003910 438 --------MA-------N-------ED----IT---------------------Q-------V----------------- 446 (787)
Q Consensus 438 --------~~-------~-------~~----i~---------------------q-------~----------------- 446 (787)
.. . .. .. | .
T Consensus 243 g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~ 322 (542)
T COG1111 243 GVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAK 322 (542)
T ss_pred CceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHH
Confidence 00 0 00 00 0 0
Q ss_pred -----------------EEecCCCcchHHHHHHhcCCcC---CCCCEEEEecccccHHHHHHHHHHcCCcee-ecc----
Q 003910 447 -----------------VHVIPSDAEKLPWLLEKLPGMI---DDGDVLVFASKKTTVDEIESQLAQKGFKAA-ALH---- 501 (787)
Q Consensus 447 -----------------~~~~~~~~~k~~~L~~~L~~~~---~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~-~lh---- 501 (787)
.....-...|+..+.+++.+.+ .+.++|||++.+..++.|.++|...+..+. .+-
T Consensus 323 ~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~ 402 (542)
T COG1111 323 SLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQAS 402 (542)
T ss_pred HHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccc
Confidence 0000012334455555554433 335899999999999999999999987774 333
Q ss_pred ----CCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEcc
Q 003910 502 ----GDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ 577 (787)
Q Consensus 502 ----g~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~ 577 (787)
.+|+|.++.++++.|++|.++|||||+++++|||||.++.||+|++-.|+..++||.|||||. +.|.+|+|++.
T Consensus 403 r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~--r~Grv~vLvt~ 480 (542)
T COG1111 403 REGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK--RKGRVVVLVTE 480 (542)
T ss_pred cccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC--CCCeEEEEEec
Confidence 379999999999999999999999999999999999999999999999999999999999996 68999999998
Q ss_pred c--cHHHHH
Q 003910 578 K--EARFAG 584 (787)
Q Consensus 578 ~--d~~~~~ 584 (787)
. |..++.
T Consensus 481 gtrdeayy~ 489 (542)
T COG1111 481 GTRDEAYYY 489 (542)
T ss_pred CchHHHHHH
Confidence 8 444443
No 62
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=1.7e-36 Score=348.12 Aligned_cols=306 Identities=16% Similarity=0.166 Sum_probs=223.0
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhh
Q 003910 245 YEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS 324 (787)
Q Consensus 245 ~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~ 324 (787)
...|+++|.++++.++.++++++++|||+|||+++.+.+ ..+... ...++||||||++|+.||.+.++++...
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~-~~~~~~------~~~~vLilvpt~eL~~Q~~~~l~~~~~~ 184 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLS-RYYLEN------YEGKVLIIVPTTSLVTQMIDDFVDYRLF 184 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH-HHHHhc------CCCeEEEEECcHHHHHHHHHHHHHhccc
Confidence 458999999999999999999999999999999754432 222221 2347999999999999999999998754
Q ss_pred cCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHhhhcCCCc
Q 003910 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDR 404 (787)
Q Consensus 325 ~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~ 404 (787)
....+..+++|.... ...+|+|+||++|..... ..+..+++|||||||++... .+..++..+++.+
T Consensus 185 ~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~~----~~~~il~~~~~~~ 250 (501)
T PHA02558 185 PREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTGK----SLTSIITKLDNCK 250 (501)
T ss_pred cccceeEEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccch----hHHHHHHhhhccc
Confidence 445555677776443 347999999999976442 24678999999999998753 4567777777788
Q ss_pred eEEEEeccCcHHHHHHH--HHHhCCCeEEEeccccc------ccccc--------------------eEEEEecCCCcch
Q 003910 405 QTLLFSATMPRKVEKLA--REILSDPVRVTVGEVGM------ANEDI--------------------TQVVHVIPSDAEK 456 (787)
Q Consensus 405 q~ll~SAT~~~~v~~l~--~~~l~~p~~i~v~~~~~------~~~~i--------------------~q~~~~~~~~~~k 456 (787)
++++||||++....... ..+++ |+...+..... ....+ .+.+..+.....+
T Consensus 251 ~~lGLTATp~~~~~~~~~~~~~fG-~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~R 329 (501)
T PHA02558 251 FKFGLTGSLRDGKANILQYVGLFG-DIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKR 329 (501)
T ss_pred eEEEEeccCCCccccHHHHHHhhC-CceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHH
Confidence 99999999975322111 11222 22111110000 00000 0000011111223
Q ss_pred HHHHHHhcCCcC-CCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEe-hhhhccC
Q 003910 457 LPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIAT-DVAARGL 534 (787)
Q Consensus 457 ~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT-~v~~rGl 534 (787)
...+..++.... ...++||||..+++++.|++.|...++++..+||++++.+|..+++.|++|...||||| +++++|+
T Consensus 330 n~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~ 409 (501)
T PHA02558 330 NKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGI 409 (501)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceecccc
Confidence 333333332222 34689999999999999999999999999999999999999999999999999999999 8999999
Q ss_pred CCCCccEEEEecCCCCHHHHHHHhhccCCCCCCCcEEE
Q 003910 535 DIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAY 572 (787)
Q Consensus 535 Dip~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i 572 (787)
|+|++++||++.++.+...|+||+||++|.+..+..|+
T Consensus 410 Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~ 447 (501)
T PHA02558 410 SIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIAT 447 (501)
T ss_pred ccccccEEEEecCCcchhhhhhhhhccccCCCCCceEE
Confidence 99999999999999999999999999999874333333
No 63
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=2e-36 Score=335.01 Aligned_cols=302 Identities=21% Similarity=0.231 Sum_probs=213.8
Q ss_pred CEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChH----
Q 003910 264 DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKL---- 339 (787)
Q Consensus 264 dvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~---- 339 (787)
++++++|||||||++|++|++..+.. ..+.++||++|+++|+.|+++.+..++.. .+..++++....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~------~~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~~ 71 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS------QKADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRIKE 71 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh------CCCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHHhc
Confidence 58999999999999999999987643 23567999999999999999999998642 344444433210
Q ss_pred -------HH-HHHH------hcCCcEEEeCHHHHHHHHHhcc----ccc--cceeEEEEechhhhhcCCChHHHHHHhhh
Q 003910 340 -------DQ-FKEL------KAGCEIVIATPGRLIDMLKMKA----LTM--SRVTYLVLDEADRMFDLGFEPQIRSIVGQ 399 (787)
Q Consensus 340 -------~~-~~~l------~~~~dIIV~Tp~~L~~~l~~~~----~~l--~~i~~lViDEah~m~~~~f~~~i~~il~~ 399 (787)
.. .... ....+|+|+||+.++..+.... ..+ ...++|||||||.+.++++.. +..++..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~ 150 (358)
T TIGR01587 72 MGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEV 150 (358)
T ss_pred cCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHH
Confidence 00 0011 1136899999999988765411 111 123789999999998765443 5555555
Q ss_pred cC-CCceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEe-cCCCcchHHHHHHhcCCcCCCCCEEEEe
Q 003910 400 IR-PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHV-IPSDAEKLPWLLEKLPGMIDDGDVLVFA 477 (787)
Q Consensus 400 ~~-~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~-~~~~~~k~~~L~~~L~~~~~~~kvLVF~ 477 (787)
+. ...|+++||||+|..+.+++..+...+........... ....+.+.. ......+...+..++......+++||||
T Consensus 151 l~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~ 229 (358)
T TIGR01587 151 LKDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEER-RFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIV 229 (358)
T ss_pred HHHcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCcccc-ccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEE
Confidence 44 57899999999998877777665443221111111000 011122211 1122234445554444334567999999
Q ss_pred cccccHHHHHHHHHHcCC--ceeeccCCCCHHHHHHH----HHHhhcCCccEEEEehhhhccCCCCCccEEEEecCCCCH
Q 003910 478 SKKTTVDEIESQLAQKGF--KAAALHGDKDQASRMEI----LQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDM 551 (787)
Q Consensus 478 ~s~~~a~~l~~~L~~~g~--~v~~lhg~~~~~eR~~~----l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~~d~p~s~ 551 (787)
+++..++.++..|++.+. .+..+||.+++.+|..+ ++.|++|+..|||||+++++||||+ +++||++..| +
T Consensus 230 ~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~ 306 (358)
T TIGR01587 230 NTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--I 306 (358)
T ss_pred CCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--H
Confidence 999999999999988766 49999999999999764 8999999999999999999999995 8899998776 7
Q ss_pred HHHHHHhhccCCCCCCCc---EEEEEEcccc
Q 003910 552 DMHVHRIGRTGRAGDKDG---TAYTLVTQKE 579 (787)
Q Consensus 552 ~~y~QriGR~gR~G~~~G---~~i~l~~~~d 579 (787)
..|+||+||+||.|.+.+ .+|+|....+
T Consensus 307 ~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 307 DSLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred HHHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 899999999999985444 6777665443
No 64
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=1.9e-35 Score=362.77 Aligned_cols=291 Identities=25% Similarity=0.328 Sum_probs=228.1
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHH
Q 003910 236 LMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIY 315 (787)
Q Consensus 236 l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~ 315 (787)
+.+.+.+....+|+|+|+.+++.++.|+|++++||||+|||+ |++|++.++.. .++++|||+||++||.|++
T Consensus 67 f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~-------~g~~vLIL~PTreLa~Qi~ 138 (1171)
T TIGR01054 67 FEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK-------KGKRCYIILPTTLLVIQVA 138 (1171)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh-------cCCeEEEEeCHHHHHHHHH
Confidence 444455545568999999999999999999999999999997 67777766532 2688999999999999999
Q ss_pred HHHHHHhhhcCceEE---EEECCCChHHH---HHHHhc-CCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhc--
Q 003910 316 LETKKFAKSHGIRVS---AVYGGMSKLDQ---FKELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFD-- 386 (787)
Q Consensus 316 ~~~~~~~~~~~i~v~---~~~gg~~~~~~---~~~l~~-~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~-- 386 (787)
+.+++++...++.+. +++||.+..++ +..+.. +++|||+||++|.+.+.. +.. .+++|||||||+|++
T Consensus 139 ~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~--l~~-~~~~iVvDEaD~~L~~~ 215 (1171)
T TIGR01054 139 EKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDE--LGP-KFDFIFVDDVDALLKAS 215 (1171)
T ss_pred HHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHH--hcC-CCCEEEEeChHhhhhcc
Confidence 999999987776654 46788776554 334444 499999999999987754 222 899999999999998
Q ss_pred ---------CCChHH-HHHHh----------------------hhcCCCce--EEEEecc-CcHHHHHHHHHHhCCCeEE
Q 003910 387 ---------LGFEPQ-IRSIV----------------------GQIRPDRQ--TLLFSAT-MPRKVEKLAREILSDPVRV 431 (787)
Q Consensus 387 ---------~~f~~~-i~~il----------------------~~~~~~~q--~ll~SAT-~~~~v~~l~~~~l~~p~~i 431 (787)
+||..+ +..++ ..++..+| +++|||| +|..+. ..++.++..+
T Consensus 216 k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~---~~l~r~ll~~ 292 (1171)
T TIGR01054 216 KNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKR---AKLFRELLGF 292 (1171)
T ss_pred ccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccH---HHHcccccce
Confidence 788764 44443 23444555 5678999 565543 2345666667
Q ss_pred EecccccccccceEEEEecCCCcchHHHHHHhcCCcCCCCCEEEEeccc---ccHHHHHHHHHHcCCceeeccCCCCHHH
Q 003910 432 TVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKK---TTVDEIESQLAQKGFKAAALHGDKDQAS 508 (787)
Q Consensus 432 ~v~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~---~~a~~l~~~L~~~g~~v~~lhg~~~~~e 508 (787)
.++.......+|.+.+..... +...|.+++... ..++||||+++ +.|+.|+..|...|+++..+||++++
T Consensus 293 ~v~~~~~~~r~I~~~~~~~~~---~~~~L~~ll~~l--~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~-- 365 (1171)
T TIGR01054 293 EVGGGSDTLRNVVDVYVEDED---LKETLLEIVKKL--GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK-- 365 (1171)
T ss_pred EecCccccccceEEEEEeccc---HHHHHHHHHHHc--CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH--
Confidence 776666666777777654432 234555655543 35899999999 99999999999999999999999973
Q ss_pred HHHHHHHhhcCCccEEEEe----hhhhccCCCCC-ccEEEEecCCC
Q 003910 509 RMEILQKFKSGVYHVLIAT----DVAARGLDIKS-IKSVVNFDIAR 549 (787)
Q Consensus 509 R~~~l~~F~~G~~~VLVaT----~v~~rGlDip~-v~~VI~~d~p~ 549 (787)
.+++.|++|+++||||| ++++||||||+ |++|||||+|.
T Consensus 366 --~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 366 --EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred --HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 68999999999999995 99999999999 89999999997
No 65
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=3.5e-34 Score=320.19 Aligned_cols=360 Identities=24% Similarity=0.328 Sum_probs=292.6
Q ss_pred HHHHHHH-HHCCCCCCcHHHHHHHHHHHcC------CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcC
Q 003910 234 TQLMHAI-SKQGYEKPTSIQCQALPIILSG------RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAP 306 (787)
Q Consensus 234 ~~l~~~l-~~~g~~~ptp~Q~~ai~~il~g------rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~P 306 (787)
..+++.+ ....| +||..|++++..|... .+-++++..|||||++++++|+..+ ..|.++.+++|
T Consensus 249 ~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai--------~~G~Q~ALMAP 319 (677)
T COG1200 249 GELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAI--------EAGYQAALMAP 319 (677)
T ss_pred HHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHH--------HcCCeeEEecc
Confidence 3444444 44455 6999999999999854 4679999999999999999999987 55788999999
Q ss_pred cHHHHHHHHHHHHHHhhhcCceEEEEECCCChH---HHHHHHhcC-CcEEEeCHHHHHHHHHhccccccceeEEEEechh
Q 003910 307 TRELAHQIYLETKKFAKSHGIRVSAVYGGMSKL---DQFKELKAG-CEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD 382 (787)
Q Consensus 307 treLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~---~~~~~l~~~-~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah 382 (787)
|.-||.|.++.+.+|+...+++|..++|..... .....+..| .+|||+|+.-+.+ .+.+.++.++|+||-|
T Consensus 320 TEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd-----~V~F~~LgLVIiDEQH 394 (677)
T COG1200 320 TEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQD-----KVEFHNLGLVIIDEQH 394 (677)
T ss_pred HHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhc-----ceeecceeEEEEeccc
Confidence 999999999999999999999999999976644 334455666 9999999766655 4568889999999999
Q ss_pred hhhcCCChHHHHHHhhhcCC-CceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcchHHHHH
Q 003910 383 RMFDLGFEPQIRSIVGQIRP-DRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLL 461 (787)
Q Consensus 383 ~m~~~~f~~~i~~il~~~~~-~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L~ 461 (787)
| |....+..|..-.. .+++|+||||+-| +.|+-..+.+.....+.+.+.....|...+... .+...++
T Consensus 395 R-----FGV~QR~~L~~KG~~~Ph~LvMTATPIP--RTLAlt~fgDldvS~IdElP~GRkpI~T~~i~~----~~~~~v~ 463 (677)
T COG1200 395 R-----FGVHQRLALREKGEQNPHVLVMTATPIP--RTLALTAFGDLDVSIIDELPPGRKPITTVVIPH----ERRPEVY 463 (677)
T ss_pred c-----ccHHHHHHHHHhCCCCCcEEEEeCCCch--HHHHHHHhccccchhhccCCCCCCceEEEEecc----ccHHHHH
Confidence 9 78777777777666 6899999999533 236888888888888888887777887766544 3344444
Q ss_pred HhcCCc-CCCCCEEEEecccccH--------HHHHHHHHHc--CCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhh
Q 003910 462 EKLPGM-IDDGDVLVFASKKTTV--------DEIESQLAQK--GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVA 530 (787)
Q Consensus 462 ~~L~~~-~~~~kvLVF~~s~~~a--------~~l~~~L~~~--g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~ 530 (787)
+.+.+. ..+.++.|.|+-.++. ..+++.|+.. ++++..+||.|+..++++++..|++|+++|||||.|+
T Consensus 464 e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVI 543 (677)
T COG1200 464 ERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVI 543 (677)
T ss_pred HHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEE
Confidence 444332 2456899999987664 4556666643 5679999999999999999999999999999999999
Q ss_pred hccCCCCCccEEEEecCCCCHHHHHHHh-hccCCCCCCCcEEEEEEccccHHHHHHHHHHHHHcCCCccHHHHHHHHhcC
Q 003910 531 ARGLDIKSIKSVVNFDIARDMDMHVHRI-GRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLAMKDG 609 (787)
Q Consensus 531 ~rGlDip~v~~VI~~d~p~s~~~y~Qri-GR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~l~~~~~~vp~~l~~~a~~~~ 609 (787)
+.|+|+|+++++|+++.-.---.-+|.. ||+||.+ ....|+.++.+.........++.|..+.+.+...-.|+.+
T Consensus 544 EVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~-~qSyC~Ll~~~~~~~~a~~RL~im~~t~DGF~IAE~DLkl--- 619 (677)
T COG1200 544 EVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGD-LQSYCVLLYKPPLSEVAKQRLKIMRETTDGFVIAEEDLKL--- 619 (677)
T ss_pred EecccCCCCeEEEEechhhhhHHHHHHhccccCCCC-cceEEEEEeCCCCChhHHHHHHHHHhcCCcceehhhhHhc---
Confidence 9999999999999999888766666666 9999976 7899999999888788889999999999999888888877
Q ss_pred cccccccccCCCCCCCCCCCC
Q 003910 610 RFRSKRDARKGGGKKGKGRGG 630 (787)
Q Consensus 610 ~~~~~~~~r~~g~~~g~g~gg 630 (787)
|+.|...|..++|
T Consensus 620 --------RGpGe~lG~rQSG 632 (677)
T COG1200 620 --------RGPGELLGTRQSG 632 (677)
T ss_pred --------cCCccccCCcccC
Confidence 6677777766655
No 66
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=6.4e-35 Score=340.43 Aligned_cols=319 Identities=18% Similarity=0.258 Sum_probs=237.5
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhh
Q 003910 244 GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (787)
Q Consensus 244 g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~ 323 (787)
|. .|+++|..+++.+++|+ |+.+.||+|||++|++|++...+ .|+.++||+||++||.|.++.+..++.
T Consensus 76 g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al--------~G~~v~VvTpt~~LA~qd~e~~~~l~~ 144 (790)
T PRK09200 76 GM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNAL--------EGKGVHLITVNDYLAKRDAEEMGQVYE 144 (790)
T ss_pred CC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHH--------cCCCeEEEeCCHHHHHHHHHHHHHHHh
Confidence 44 79999999999988876 99999999999999999986654 367899999999999999999999999
Q ss_pred hcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHH-HHHHHhc------cccccceeEEEEechhhhhc-CC-------
Q 003910 324 SHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRL-IDMLKMK------ALTMSRVTYLVLDEADRMFD-LG------- 388 (787)
Q Consensus 324 ~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L-~~~l~~~------~~~l~~i~~lViDEah~m~~-~~------- 388 (787)
.+|+++.+++|+.+...+.+. ..+++|+++||++| .+++... ...+..+.++||||||.|+- ..
T Consensus 145 ~lGl~v~~i~g~~~~~~~r~~-~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliis 223 (790)
T PRK09200 145 FLGLTVGLNFSDIDDASEKKA-IYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIIS 223 (790)
T ss_pred hcCCeEEEEeCCCCcHHHHHH-hcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeee
Confidence 999999999999884444333 34699999999999 5555432 23568899999999998731 00
Q ss_pred --------ChHHHHHHhhhcCC--------C-------------------------------------------------
Q 003910 389 --------FEPQIRSIVGQIRP--------D------------------------------------------------- 403 (787)
Q Consensus 389 --------f~~~i~~il~~~~~--------~------------------------------------------------- 403 (787)
+...+..++..+.. .
T Consensus 224 g~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~ 303 (790)
T PRK09200 224 GKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDV 303 (790)
T ss_pred CCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCC
Confidence 01111111111110 0
Q ss_pred ------------------------------------------------------------ceEEEEeccCcHHHHHHHHH
Q 003910 404 ------------------------------------------------------------RQTLLFSATMPRKVEKLARE 423 (787)
Q Consensus 404 ------------------------------------------------------------~q~ll~SAT~~~~v~~l~~~ 423 (787)
.++.+||.|....-.++ ..
T Consensus 304 dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~-~~ 382 (790)
T PRK09200 304 DYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEF-FE 382 (790)
T ss_pred cEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHH-HH
Confidence 13345555543332232 22
Q ss_pred HhCCCeEEEecccccccccceEEEEecCCCcchHHHHHHhcCCc-CCCCCEEEEecccccHHHHHHHHHHcCCceeeccC
Q 003910 424 ILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGM-IDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHG 502 (787)
Q Consensus 424 ~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~-~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg 502 (787)
.++-.+.......+....+... .+......|...|+..+... ....++||||+++..++.|+..|.+.++++..|||
T Consensus 383 ~Y~l~v~~IPt~kp~~r~d~~~--~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~ 460 (790)
T PRK09200 383 VYNMEVVQIPTNRPIIRIDYPD--KVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNA 460 (790)
T ss_pred HhCCcEEECCCCCCcccccCCC--eEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecC
Confidence 2222222222111111111111 12224456888888877553 24568999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhcCCccEEEEehhhhccCCC---CCcc-----EEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEE
Q 003910 503 DKDQASRMEILQKFKSGVYHVLIATDVAARGLDI---KSIK-----SVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTL 574 (787)
Q Consensus 503 ~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDi---p~v~-----~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l 574 (787)
.+.+.++..+...++.| .|||||++++||+|| ++|. |||+|++|.+...|+||+|||||.| ++|.+++|
T Consensus 461 ~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G-~~G~s~~~ 537 (790)
T PRK09200 461 KNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQG-DPGSSQFF 537 (790)
T ss_pred CccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCC-CCeeEEEE
Confidence 99998888888877766 699999999999999 6898 9999999999999999999999999 68999999
Q ss_pred EccccH
Q 003910 575 VTQKEA 580 (787)
Q Consensus 575 ~~~~d~ 580 (787)
++.+|.
T Consensus 538 is~eD~ 543 (790)
T PRK09200 538 ISLEDD 543 (790)
T ss_pred EcchHH
Confidence 998765
No 67
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=4.5e-34 Score=346.31 Aligned_cols=324 Identities=25% Similarity=0.319 Sum_probs=243.6
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhh
Q 003910 245 YEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS 324 (787)
Q Consensus 245 ~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~ 324 (787)
..+|++||.+++..++.+ ++|+++|||+|||++++++++..+. ..+.++|||+||++|+.||.+.+++++..
T Consensus 13 ~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~-------~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 84 (773)
T PRK13766 13 TIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLH-------KKGGKVLILAPTKPLVEQHAEFFRKFLNI 84 (773)
T ss_pred cCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHH-------hCCCeEEEEeCcHHHHHHHHHHHHHHhCC
Confidence 357999999999988887 9999999999999999998887762 23567999999999999999999998754
Q ss_pred cCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHhhhcCCCc
Q 003910 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDR 404 (787)
Q Consensus 325 ~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~ 404 (787)
....+..+.|+.... ....+...++|+|+||+.+...+....+.+..+++|||||||++........+...+....+..
T Consensus 85 ~~~~v~~~~g~~~~~-~r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~ 163 (773)
T PRK13766 85 PEEKIVVFTGEVSPE-KRAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNP 163 (773)
T ss_pred CCceEEEEeCCCCHH-HHHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCC
Confidence 445777777776554 3455666789999999999888877777888999999999999875433334444444445567
Q ss_pred eEEEEeccCcHH---HHHHHHHHhCCCeEE--------------------Eeccc------------------------c
Q 003910 405 QTLLFSATMPRK---VEKLAREILSDPVRV--------------------TVGEV------------------------G 437 (787)
Q Consensus 405 q~ll~SAT~~~~---v~~l~~~~l~~p~~i--------------------~v~~~------------------------~ 437 (787)
++++||||+... +..++..+....+.+ .+... +
T Consensus 164 ~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~ 243 (773)
T PRK13766 164 LVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELG 243 (773)
T ss_pred EEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 899999997322 222222221110000 00000 0
Q ss_pred cc---c------------ccceEE--------------------------------------------------------
Q 003910 438 MA---N------------EDITQV-------------------------------------------------------- 446 (787)
Q Consensus 438 ~~---~------------~~i~q~-------------------------------------------------------- 446 (787)
.. . ..+.+.
T Consensus 244 ~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~ 323 (773)
T PRK13766 244 VIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKAS 323 (773)
T ss_pred CcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHH
Confidence 00 0 000000
Q ss_pred ---------------EEecCCCcchHHHHHHhcCCc---CCCCCEEEEecccccHHHHHHHHHHcCCceeeccCC-----
Q 003910 447 ---------------VHVIPSDAEKLPWLLEKLPGM---IDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGD----- 503 (787)
Q Consensus 447 ---------------~~~~~~~~~k~~~L~~~L~~~---~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----- 503 (787)
+..+.....|+..|.++|.+. ....++||||+++..|+.|+++|...++.+..+||.
T Consensus 324 ~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~ 403 (773)
T PRK13766 324 KRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDG 403 (773)
T ss_pred HHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccc
Confidence 000011234555555555443 245699999999999999999999999999999986
Q ss_pred ---CCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEcccc
Q 003910 504 ---KDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKE 579 (787)
Q Consensus 504 ---~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d 579 (787)
|++.+|..++..|++|.++|||||+++++|+|+|.+++||+||+|+++..|+||+||+||.| .|.+|+|++...
T Consensus 404 ~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~--~~~v~~l~~~~t 480 (773)
T PRK13766 404 DKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE--EGRVVVLIAKGT 480 (773)
T ss_pred cCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC--CCEEEEEEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999987 489999987653
No 68
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=2.2e-35 Score=317.55 Aligned_cols=337 Identities=20% Similarity=0.282 Sum_probs=275.0
Q ss_pred ccccCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEc
Q 003910 227 FEDCGFSTQLMHAISKQGYEKPTSIQCQALPI-ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA 305 (787)
Q Consensus 227 f~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~-il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~ 305 (787)
..++.+++.+.+.|+..|++.++|+|.-++.. ++.|+|.+++.+|+||||++.-++-+..++. .+.+.|+|+
T Consensus 196 vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~-------~g~KmlfLv 268 (830)
T COG1202 196 VDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS-------GGKKMLFLV 268 (830)
T ss_pred ccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh-------CCCeEEEEe
Confidence 45678999999999999999999999999987 7799999999999999999988888877754 367789999
Q ss_pred CcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHH----HHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEech
Q 003910 306 PTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF----KELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEA 381 (787)
Q Consensus 306 PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~----~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEa 381 (787)
|..+||+|-++.|+.-...+++.+..-+|-.-....- ......+||||+||+.+-.++... ..+.++..|||||+
T Consensus 269 PLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVIDEi 347 (830)
T COG1202 269 PLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVIDEI 347 (830)
T ss_pred hhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEeeee
Confidence 9999999999999999998999887777643222110 111235899999999998888766 56899999999999
Q ss_pred hhhhcCCChHHHHHHh---hhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcchHH
Q 003910 382 DRMFDLGFEPQIRSIV---GQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLP 458 (787)
Q Consensus 382 h~m~~~~f~~~i~~il---~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~ 458 (787)
|.+-+....+.+..++ ..+-+..|+|.+|||+-+. +++++.+-..++...-. +..+..++.++.....|+.
T Consensus 348 HtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~y~~R-----PVplErHlvf~~~e~eK~~ 421 (830)
T COG1202 348 HTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKLGAKLVLYDER-----PVPLERHLVFARNESEKWD 421 (830)
T ss_pred eeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeEeecCC-----CCChhHeeeeecCchHHHH
Confidence 9988765555555554 4445789999999998755 66788876666554432 2345566666766778887
Q ss_pred HHHHhcCC-------cCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhh
Q 003910 459 WLLEKLPG-------MIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAA 531 (787)
Q Consensus 459 ~L~~~L~~-------~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~ 531 (787)
.+..+.+. ....|++|||++++..|..|+.+|..+|+++..+|++++..+|..+...|.++++.++|+|-+++
T Consensus 422 ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~ 501 (830)
T COG1202 422 IIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALA 501 (830)
T ss_pred HHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhh
Confidence 76665432 22457999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCccEEEE----e-cCCCCHHHHHHHhhccCCCC-CCCcEEEEEEccc
Q 003910 532 RGLDIKSIKSVVN----F-DIARDMDMHVHRIGRTGRAG-DKDGTAYTLVTQK 578 (787)
Q Consensus 532 rGlDip~v~~VI~----~-d~p~s~~~y~QriGR~gR~G-~~~G~~i~l~~~~ 578 (787)
.|+|+|.- .||+ + .-+-++.+|.|+.||+||.+ +..|++|.++.+.
T Consensus 502 AGVDFPAS-QVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 502 AGVDFPAS-QVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred cCCCCchH-HHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 99999964 4443 2 33559999999999999998 5569999998663
No 69
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=1.9e-34 Score=333.25 Aligned_cols=320 Identities=20% Similarity=0.196 Sum_probs=231.1
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcC
Q 003910 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (787)
Q Consensus 247 ~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~ 326 (787)
.++|+|.|++..+...+..|+.++||+|||++|++|++.+++. ++.++||+|+++||.|+++++..++..+|
T Consensus 68 glrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~--------g~~V~VVTpn~yLA~Rdae~m~~l~~~LG 139 (762)
T TIGR03714 68 GMFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALT--------GKGAMLVTTNDYLAKRDAEEMGPVYEWLG 139 (762)
T ss_pred CCCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhc--------CCceEEeCCCHHHHHHHHHHHHHHHhhcC
Confidence 3566666666666666668999999999999999998877643 45699999999999999999999999999
Q ss_pred ceEEEEECCCC---hHHHHHHHhcCCcEEEeCHHHH-HHHHHh------ccccccceeEEEEechhhhhc-CC-------
Q 003910 327 IRVSAVYGGMS---KLDQFKELKAGCEIVIATPGRL-IDMLKM------KALTMSRVTYLVLDEADRMFD-LG------- 388 (787)
Q Consensus 327 i~v~~~~gg~~---~~~~~~~l~~~~dIIV~Tp~~L-~~~l~~------~~~~l~~i~~lViDEah~m~~-~~------- 388 (787)
+.+.+++++.. ..........+++|+++||++| .+++.. ....+..+.++||||||.|+- ..
T Consensus 140 Lsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliis 219 (762)
T TIGR03714 140 LTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVIS 219 (762)
T ss_pred CcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeee
Confidence 99998887632 2222334445799999999999 555532 234577899999999998842 10
Q ss_pred --------ChHHHHHHhhhcCCC---------------------------------------------------------
Q 003910 389 --------FEPQIRSIVGQIRPD--------------------------------------------------------- 403 (787)
Q Consensus 389 --------f~~~i~~il~~~~~~--------------------------------------------------------- 403 (787)
+...+..++..+.+.
T Consensus 220 g~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~ 299 (762)
T TIGR03714 220 GAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNK 299 (762)
T ss_pred CCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCC
Confidence 001111111111110
Q ss_pred ------------------------------------------------------------ceEEEEeccCcHHHHHHHHH
Q 003910 404 ------------------------------------------------------------RQTLLFSATMPRKVEKLARE 423 (787)
Q Consensus 404 ------------------------------------------------------------~q~ll~SAT~~~~v~~l~~~ 423 (787)
.++.+||.|......++. .
T Consensus 300 dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~-~ 378 (762)
T TIGR03714 300 DYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFI-E 378 (762)
T ss_pred ceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHH-H
Confidence 234455555443333333 2
Q ss_pred HhCCCeEEEecccccccccceEEEEecCCCcchHHHHHHhcCCc-CCCCCEEEEecccccHHHHHHHHHHcCCceeeccC
Q 003910 424 ILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGM-IDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHG 502 (787)
Q Consensus 424 ~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~-~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg 502 (787)
+++-.+.......+....+... .+......|+..++..+.+. ....++||||+++..++.|+..|.+.++++.+|||
T Consensus 379 iY~l~v~~IPt~kp~~r~d~~d--~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a 456 (762)
T TIGR03714 379 TYSLSVVKIPTNKPIIRIDYPD--KIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNA 456 (762)
T ss_pred HhCCCEEEcCCCCCeeeeeCCC--eEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecC
Confidence 3333332222222211111111 12224456888888877654 34568999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCC---------CccEEEEecCCCCHHHHHHHhhccCCCCCCCcEEEE
Q 003910 503 DKDQASRMEILQKFKSGVYHVLIATDVAARGLDIK---------SIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYT 573 (787)
Q Consensus 503 ~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip---------~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~ 573 (787)
.+.+.++..+...|+.| .|||||++++||+||+ ++.+||+|++|....+ +||+|||||.| ++|.+++
T Consensus 457 ~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG-~~G~s~~ 532 (762)
T TIGR03714 457 QNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQG-DPGSSQF 532 (762)
T ss_pred CChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCC-CceeEEE
Confidence 99999988887777777 6999999999999999 9999999999998777 99999999999 6899999
Q ss_pred EEccccHH
Q 003910 574 LVTQKEAR 581 (787)
Q Consensus 574 l~~~~d~~ 581 (787)
|++..|.-
T Consensus 533 ~is~eD~l 540 (762)
T TIGR03714 533 FVSLEDDL 540 (762)
T ss_pred EEccchhh
Confidence 99987653
No 70
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=2.4e-34 Score=338.39 Aligned_cols=336 Identities=24% Similarity=0.306 Sum_probs=257.3
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHH-HcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHH
Q 003910 231 GFSTQLMHAISKQGYEKPTSIQCQALPII-LSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRE 309 (787)
Q Consensus 231 ~l~~~l~~~l~~~g~~~ptp~Q~~ai~~i-l~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~Ptre 309 (787)
.+++.+.+.++..++..+.|.|+.++... +.++|+|+|+|||||||+++++.++..+++. +.++|+|||+++
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~-------~~k~vYivPlkA 87 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG-------GGKVVYIVPLKA 87 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc-------CCcEEEEeChHH
Confidence 36777888888888888888888888664 4569999999999999999999999998653 566999999999
Q ss_pred HHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCC
Q 003910 310 LAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGF 389 (787)
Q Consensus 310 La~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f 389 (787)
||.|++++++ ....+|++|...+|+...... ...+++|||+||+++-.++.+....+..+++|||||+|.+.+...
T Consensus 88 La~Ek~~~~~-~~~~~GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~R 163 (766)
T COG1204 88 LAEEKYEEFS-RLEELGIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTR 163 (766)
T ss_pred HHHHHHHHhh-hHHhcCCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCccc
Confidence 9999999999 445579999999998875442 234699999999999998888777788999999999999988766
Q ss_pred hHHHHHHhhhcC---CCceEEEEeccCcHHHHHHHHHHhCCCeEEEeccccccc-ccceEEEEecCCCc-----chHHHH
Q 003910 390 EPQIRSIVGQIR---PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMAN-EDITQVVHVIPSDA-----EKLPWL 460 (787)
Q Consensus 390 ~~~i~~il~~~~---~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~-~~i~q~~~~~~~~~-----~k~~~L 460 (787)
.+.+..|+..++ ...|++.+|||+|+ ..+++.|+-.+++........... ....+.+....... .+...+
T Consensus 164 G~~lE~iv~r~~~~~~~~rivgLSATlpN-~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~ 242 (766)
T COG1204 164 GPVLESIVARMRRLNELIRIVGLSATLPN-AEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLA 242 (766)
T ss_pred CceehhHHHHHHhhCcceEEEEEeeecCC-HHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHH
Confidence 777777766554 34799999999985 478888887776532222222211 11223333322111 111222
Q ss_pred HH-hcCCcCCCCCEEEEecccccHHHHHHHHHHc-------------------------------------CCceeeccC
Q 003910 461 LE-KLPGMIDDGDVLVFASKKTTVDEIESQLAQK-------------------------------------GFKAAALHG 502 (787)
Q Consensus 461 ~~-~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~-------------------------------------g~~v~~lhg 502 (787)
+. .+......+++||||+++..+...++.|... ...++.+|.
T Consensus 243 ~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhA 322 (766)
T COG1204 243 LELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHA 322 (766)
T ss_pred HHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCcccccc
Confidence 22 2223335679999999999999999988831 123788999
Q ss_pred CCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEE----Eec-----CCCCHHHHHHHhhccCCCC-CCCcEEE
Q 003910 503 DKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVV----NFD-----IARDMDMHVHRIGRTGRAG-DKDGTAY 572 (787)
Q Consensus 503 ~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI----~~d-----~p~s~~~y~QriGR~gR~G-~~~G~~i 572 (787)
+++..+|..+.+.|+.|.++|||||..++.|+|+|.-++|| .|+ .+-++.+|+|++||+||.| ...|.++
T Consensus 323 GL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~ 402 (766)
T COG1204 323 GLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAI 402 (766)
T ss_pred CCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEE
Confidence 99999999999999999999999999999999999755555 466 4557899999999999999 4457777
Q ss_pred EEEccc
Q 003910 573 TLVTQK 578 (787)
Q Consensus 573 ~l~~~~ 578 (787)
++.+..
T Consensus 403 i~~~~~ 408 (766)
T COG1204 403 ILATSH 408 (766)
T ss_pred EEecCc
Confidence 777333
No 71
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=5.8e-34 Score=327.20 Aligned_cols=318 Identities=20% Similarity=0.260 Sum_probs=241.2
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhc
Q 003910 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (787)
Q Consensus 246 ~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~ 325 (787)
..|+++|..+.+.+..|+ |+.++||+|||++|++|++...+. +..|+||+||++||.|.++++.+++..+
T Consensus 55 ~~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~--------G~~V~VvTpt~~LA~qdae~~~~l~~~L 124 (745)
T TIGR00963 55 MRPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT--------GKGVHVVTVNDYLAQRDAEWMGQVYRFL 124 (745)
T ss_pred CCccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh--------CCCEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 468899998888887776 999999999999999999644432 4459999999999999999999999999
Q ss_pred CceEEEEECCCChHHHHHHHhcCCcEEEeCHHHH-HHHHHhc------cccccceeEEEEechhhhhc-C--------C-
Q 003910 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRL-IDMLKMK------ALTMSRVTYLVLDEADRMFD-L--------G- 388 (787)
Q Consensus 326 ~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L-~~~l~~~------~~~l~~i~~lViDEah~m~~-~--------~- 388 (787)
++++.+++|+.+...+... ..++|+++||++| ++++..+ .+.+..+.++||||+|+|+- . +
T Consensus 125 GLsv~~i~g~~~~~~r~~~--y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~ 202 (745)
T TIGR00963 125 GLSVGLILSGMSPEERREA--YACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGP 202 (745)
T ss_pred CCeEEEEeCCCCHHHHHHh--cCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCC
Confidence 9999999999886544333 3589999999999 8888665 35678899999999998742 0 0
Q ss_pred -----------------------Ch---------------HHHHHHh------------------hhc------CC----
Q 003910 389 -----------------------FE---------------PQIRSIV------------------GQI------RP---- 402 (787)
Q Consensus 389 -----------------------f~---------------~~i~~il------------------~~~------~~---- 402 (787)
|. ..+..++ ..+ ..
T Consensus 203 ~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dY 282 (745)
T TIGR00963 203 AEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDY 282 (745)
T ss_pred CCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcE
Confidence 00 0011100 000 00
Q ss_pred ---------------------------------------------------------CceEEEEeccCcHHHHHHHHHHh
Q 003910 403 ---------------------------------------------------------DRQTLLFSATMPRKVEKLAREIL 425 (787)
Q Consensus 403 ---------------------------------------------------------~~q~ll~SAT~~~~v~~l~~~~l 425 (787)
-.++.+||.|......+ +..++
T Consensus 283 iV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E-~~~iY 361 (745)
T TIGR00963 283 IVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEE-FEKIY 361 (745)
T ss_pred EEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHH-HHHHh
Confidence 02455677776544333 33444
Q ss_pred CCCeEEEecccccccccceEEEEecCCCcchHHHHHHhcCCcC-CCCCEEEEecccccHHHHHHHHHHcCCceeeccCCC
Q 003910 426 SDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDK 504 (787)
Q Consensus 426 ~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~ 504 (787)
+-++.+.....+....+... .+......|+..+++.+.+.. ...++||||+++..++.|+..|.+.++++..||+.
T Consensus 362 ~l~vv~IPtnkp~~R~d~~d--~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~- 438 (745)
T TIGR00963 362 NLEVVVVPTNRPVIRKDLSD--LVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK- 438 (745)
T ss_pred CCCEEEeCCCCCeeeeeCCC--eEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC-
Confidence 44443333222222222111 223345567877777664433 35599999999999999999999999999999998
Q ss_pred CHHHHHHHHHHhhcCCccEEEEehhhhccCCCCC-------ccEEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEcc
Q 003910 505 DQASRMEILQKFKSGVYHVLIATDVAARGLDIKS-------IKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ 577 (787)
Q Consensus 505 ~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~-------v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~ 577 (787)
+.+|+..+..|+.+...|+|||++++||+||+. .-|||+++.|.+...|.|++|||||.| .+|.+.+|++.
T Consensus 439 -q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG-~~G~s~~~ls~ 516 (745)
T TIGR00963 439 -NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQG-DPGSSRFFLSL 516 (745)
T ss_pred -hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCC-CCcceEEEEec
Confidence 889999999999999999999999999999998 559999999999999999999999999 68999999998
Q ss_pred ccHH
Q 003910 578 KEAR 581 (787)
Q Consensus 578 ~d~~ 581 (787)
.|.-
T Consensus 517 eD~l 520 (745)
T TIGR00963 517 EDNL 520 (745)
T ss_pred cHHH
Confidence 8753
No 72
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=4.7e-33 Score=315.45 Aligned_cols=322 Identities=26% Similarity=0.295 Sum_probs=233.0
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhh
Q 003910 245 YEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS 324 (787)
Q Consensus 245 ~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~ 324 (787)
...++.||.+.+..+| ++|+|+++|||+|||.+++..|++|+-+.+ ..++|+++||+-|+.|....+..++..
T Consensus 60 ~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p------~~KiVF~aP~~pLv~QQ~a~~~~~~~~ 132 (746)
T KOG0354|consen 60 NLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRP------KGKVVFLAPTRPLVNQQIACFSIYLIP 132 (746)
T ss_pred cccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCC------cceEEEeeCCchHHHHHHHHHhhccCc
Confidence 3579999999999999 999999999999999999999999986654 367999999999999998777777653
Q ss_pred cCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhcccc-ccceeEEEEechhhhhcCC-ChHHHHHHhhhcCC
Q 003910 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALT-MSRVTYLVLDEADRMFDLG-FEPQIRSIVGQIRP 402 (787)
Q Consensus 325 ~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~-l~~i~~lViDEah~m~~~~-f~~~i~~il~~~~~ 402 (787)
..+....||.........+....+|+|+||+.|.+.|...... |+.+.++||||||+-.... |...++..+..-..
T Consensus 133 --~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~ 210 (746)
T KOG0354|consen 133 --YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQ 210 (746)
T ss_pred --ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhc
Confidence 5666777775544444577778999999999999988765433 6899999999999865443 44444465555444
Q ss_pred CceEEEEeccCcHHHHHHHHHHhCCCeEEEecccc---------------------------------------------
Q 003910 403 DRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVG--------------------------------------------- 437 (787)
Q Consensus 403 ~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~--------------------------------------------- 437 (787)
..|+|++|||+-...+....-++.-...+.+....
T Consensus 211 ~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~ 290 (746)
T KOG0354|consen 211 GNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEG 290 (746)
T ss_pred cccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcC
Confidence 45999999999654433321111100000000000
Q ss_pred --------------------cccccc--eEE--E------------------Eec-------------------------
Q 003910 438 --------------------MANEDI--TQV--V------------------HVI------------------------- 450 (787)
Q Consensus 438 --------------------~~~~~i--~q~--~------------------~~~------------------------- 450 (787)
....+. .+. + ..+
T Consensus 291 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~ 370 (746)
T KOG0354|consen 291 LIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEA 370 (746)
T ss_pred ccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcc
Confidence 000000 000 0 000
Q ss_pred --------------------CCCcchHHHHHHhcCCc---CCCCCEEEEecccccHHHHHHHHHH---cCCceeeccC--
Q 003910 451 --------------------PSDAEKLPWLLEKLPGM---IDDGDVLVFASKKTTVDEIESQLAQ---KGFKAAALHG-- 502 (787)
Q Consensus 451 --------------------~~~~~k~~~L~~~L~~~---~~~~kvLVF~~s~~~a~~l~~~L~~---~g~~v~~lhg-- 502 (787)
+....|+..|.+.|... ....++||||.++..|+.|..+|.. .+++..++-|
T Consensus 371 ~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~ 450 (746)
T KOG0354|consen 371 RLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQG 450 (746)
T ss_pred hhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeecc
Confidence 00122333333333221 2334899999999999999999983 2344444433
Q ss_pred ------CCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEc
Q 003910 503 ------DKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVT 576 (787)
Q Consensus 503 ------~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~ 576 (787)
+|+|.++.++++.|++|.++|||||+++++||||+.|++||-||...|+...+||.|| ||+ +.|.++.+++
T Consensus 451 ~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa--~ns~~vll~t 527 (746)
T KOG0354|consen 451 KSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA--RNSKCVLLTT 527 (746)
T ss_pred ccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc--cCCeEEEEEc
Confidence 8999999999999999999999999999999999999999999999999999999999 998 5799999998
Q ss_pred cc
Q 003910 577 QK 578 (787)
Q Consensus 577 ~~ 578 (787)
..
T Consensus 528 ~~ 529 (746)
T KOG0354|consen 528 GS 529 (746)
T ss_pred ch
Confidence 43
No 73
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=2.7e-32 Score=300.30 Aligned_cols=290 Identities=17% Similarity=0.191 Sum_probs=204.3
Q ss_pred HHHHHHHHHHcCCC--EEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhc---
Q 003910 251 IQCQALPIILSGRD--IIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH--- 325 (787)
Q Consensus 251 ~Q~~ai~~il~grd--vii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~--- 325 (787)
+|.++++.+..+.+ +++++|||+|||.+|++|++.. ..++|+++|+++|+.|+++.++.++...
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~-----------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~ 69 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG-----------ENDTIALYPTNALIEDQTEAIKEFVDVFKPE 69 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc-----------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCC
Confidence 59999999999875 7889999999999999998842 2347999999999999999999998533
Q ss_pred -CceEEEEECCCChHH-HH-----------------H-HH-hcCCcEEEeCHHHHHHHHHhcc--------ccccceeEE
Q 003910 326 -GIRVSAVYGGMSKLD-QF-----------------K-EL-KAGCEIVIATPGRLIDMLKMKA--------LTMSRVTYL 376 (787)
Q Consensus 326 -~i~v~~~~gg~~~~~-~~-----------------~-~l-~~~~dIIV~Tp~~L~~~l~~~~--------~~l~~i~~l 376 (787)
++.+..+.|...... .. + .+ ...++|+++||+.|..++.... ..+..+++|
T Consensus 70 ~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~i 149 (357)
T TIGR03158 70 RDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTV 149 (357)
T ss_pred CCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEE
Confidence 455555555422110 00 0 01 2358899999999987654311 125789999
Q ss_pred EEechhhhhcCCC-----hHHHHHHhhhcCCCceEEEEeccCcHHHHHHHHHH--hCCCeEEEeccccc---------c-
Q 003910 377 VLDEADRMFDLGF-----EPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREI--LSDPVRVTVGEVGM---------A- 439 (787)
Q Consensus 377 ViDEah~m~~~~f-----~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~--l~~p~~i~v~~~~~---------~- 439 (787)
||||+|.+..+.. ......++.......+++++|||+++.+...+... +..+..+..+..-. .
T Consensus 150 V~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~ 229 (357)
T TIGR03158 150 IFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADN 229 (357)
T ss_pred EEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccc
Confidence 9999998764321 12333444433445799999999999888777765 45554333332000 0
Q ss_pred --------cccceEEEEecCCCcchHHHH---HHhcCCc---CCCCCEEEEecccccHHHHHHHHHHcC--CceeeccCC
Q 003910 440 --------NEDITQVVHVIPSDAEKLPWL---LEKLPGM---IDDGDVLVFASKKTTVDEIESQLAQKG--FKAAALHGD 503 (787)
Q Consensus 440 --------~~~i~q~~~~~~~~~~k~~~L---~~~L~~~---~~~~kvLVF~~s~~~a~~l~~~L~~~g--~~v~~lhg~ 503 (787)
...+.+.+.. ....+...+ .+.+.+. ...+++||||+++..++.++..|+..+ +.+..+||.
T Consensus 230 ~~~~~~~~~~~i~~~~~~--~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~ 307 (357)
T TIGR03158 230 KTQSFRPVLPPVELELIP--APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGF 307 (357)
T ss_pred cccccceeccceEEEEEe--CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecC
Confidence 0133343332 222333333 2322211 245689999999999999999999864 578899999
Q ss_pred CCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEEEecCCCCHHHHHHHhhccC
Q 003910 504 KDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTG 562 (787)
Q Consensus 504 ~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~g 562 (787)
+++.+|.++. +..|||||++++|||||+.+ +|| ++ |.++..|+||+||+|
T Consensus 308 ~~~~~R~~~~------~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 308 APKKDRERAM------QFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred CCHHHHHHhc------cCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 9999987653 68999999999999999986 666 55 899999999999997
No 74
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=2.1e-33 Score=324.62 Aligned_cols=397 Identities=17% Similarity=0.298 Sum_probs=277.8
Q ss_pred hhhhhhhccCCCCCCCCCccccCccccccccCCccccCCCHHHHHHHHHHcCce---eccCCCCCccCCccccCCCHHHH
Q 003910 161 PVVVEKKKIEPIPALDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIR---VSGFDVPRPVKTFEDCGFSTQLM 237 (787)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~f~k~fy~~~~~i~~~s~~~~~~~~~~~~i~---v~g~~~P~pi~sf~~~~l~~~l~ 237 (787)
.++......++...+.|..+.|+ .+.|.....|..+...++..+.....-. -.+...-++...|..+...+..+
T Consensus 290 RIia~~~~~d~eYLvKW~~LpY~---e~TWE~~~~I~~~~~~~~~~~~~Re~sk~~p~~~~~~~~~rp~~~Kle~qp~~~ 366 (1373)
T KOG0384|consen 290 RIIAEQTSKDPEYLVKWRGLPYE---ECTWEDAEDIAKKAQEEIEEFQSRENSKTLPNKGCKYRPQRPRFRKLEKQPEYK 366 (1373)
T ss_pred hhhhcccCCCceeEEEecCCCcc---cccccchhhhhhhHHHHHHHHhhhhccccCCCCccccCccchhHHHhhcCcccc
Confidence 34433333445566677776665 5778777778777777777777553211 11222223334455544444433
Q ss_pred HHHHHCCCCCCcHHHHHHHHHHH----cCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHH
Q 003910 238 HAISKQGYEKPTSIQCQALPIIL----SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQ 313 (787)
Q Consensus 238 ~~l~~~g~~~ptp~Q~~ai~~il----~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Q 313 (787)
.. ..++.||..+++|++ .+.++|++.+||.|||++ .+.+|.+|..... ..||. |||+|...+. .
T Consensus 367 ~g------~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvq-ti~fl~~l~~~~~---~~gpf-lvvvplst~~-~ 434 (1373)
T KOG0384|consen 367 GG------NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQ-TITFLSYLFHSLQ---IHGPF-LVVVPLSTIT-A 434 (1373)
T ss_pred cc------chhhhhhcccchhHHHHHHhcccceehhhcCCCcchH-HHHHHHHHHHhhh---ccCCe-EEEeehhhhH-H
Confidence 22 679999999999987 568999999999999988 5666777665432 34675 8889986555 6
Q ss_pred HHHHHHHHhhhcCceEEEEECCCChHHHHHHHh----c-----CCcEEEeCHHHHHHHHHhccccccceeEEEEechhhh
Q 003910 314 IYLETKKFAKSHGIRVSAVYGGMSKLDQFKELK----A-----GCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRM 384 (787)
Q Consensus 314 i~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~----~-----~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m 384 (787)
|..++..|+ .+++++++|.....+.++... . .++++|+|++.++.- +..+.-..|.+++|||||++
T Consensus 435 W~~ef~~w~---~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkD--k~~L~~i~w~~~~vDeahrL 509 (1373)
T KOG0384|consen 435 WEREFETWT---DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKD--KAELSKIPWRYLLVDEAHRL 509 (1373)
T ss_pred HHHHHHHHh---hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhcc--HhhhccCCcceeeecHHhhc
Confidence 999999997 789999999887777666542 1 379999999988763 22334446889999999999
Q ss_pred hcCCChHHHHHHhhhcCCCceEEEEeccCcHHHHHHH-------------------------------------------
Q 003910 385 FDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLA------------------------------------------- 421 (787)
Q Consensus 385 ~~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~------------------------------------------- 421 (787)
.+. ...+...+..+....+++++..++.+++.+|.
T Consensus 510 kN~--~~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr 587 (1373)
T KOG0384|consen 510 KND--ESKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRR 587 (1373)
T ss_pred Cch--HHHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHH
Confidence 875 45566667666655555544444666666662
Q ss_pred ----------------------------------------------------------HHHhCCCeEEEecccccccccc
Q 003910 422 ----------------------------------------------------------REILSDPVRVTVGEVGMANEDI 443 (787)
Q Consensus 422 ----------------------------------------------------------~~~l~~p~~i~v~~~~~~~~~i 443 (787)
+++|++|..|......... .+
T Consensus 588 ~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~-~~ 666 (1373)
T KOG0384|consen 588 LKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILG-DF 666 (1373)
T ss_pred HHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHH-hh
Confidence 2333333333221110000 00
Q ss_pred e-----EEEEecCCCcchHHHHHHhcCCcCCC-CCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhh
Q 003910 444 T-----QVVHVIPSDAEKLPWLLEKLPGMIDD-GDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFK 517 (787)
Q Consensus 444 ~-----q~~~~~~~~~~k~~~L~~~L~~~~~~-~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~ 517 (787)
. ..+..+-....|+..|-.+|.++... .+||||.+.+.+++.|++||...+|++..|.|.+..+.|..+|++|.
T Consensus 667 ~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFn 746 (1373)
T KOG0384|consen 667 RDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFN 746 (1373)
T ss_pred hhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhcc
Confidence 0 00000001234444445555555444 59999999999999999999999999999999999999999999997
Q ss_pred c---CCccEEEEehhhhccCCCCCccEEEEecCCCCHHHHHHHhhccCCCCCCC-cEEEEEEccccH
Q 003910 518 S---GVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKD-GTAYTLVTQKEA 580 (787)
Q Consensus 518 ~---G~~~VLVaT~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~-G~~i~l~~~~d~ 580 (787)
. ..+.+|+||.+.+-|||+..+++||+||..|||..-+|+..||+|+|++. ..+|.||+..-.
T Consensus 747 ap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~Tv 813 (1373)
T KOG0384|consen 747 APDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTV 813 (1373)
T ss_pred CCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCch
Confidence 6 56889999999999999999999999999999999999999999999654 457888988644
No 75
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=8.9e-32 Score=311.29 Aligned_cols=321 Identities=16% Similarity=0.203 Sum_probs=219.7
Q ss_pred CCCcHHHHHHHHHHHc-C--CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHh
Q 003910 246 EKPTSIQCQALPIILS-G--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (787)
Q Consensus 246 ~~ptp~Q~~ai~~il~-g--rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~ 322 (787)
..|+|||.+++..++. + +..|+++|||+|||++.+..+ ..+ +..+|||||+.+|+.||.+++.+|+
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa-~~l----------~k~tLILvps~~Lv~QW~~ef~~~~ 322 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAA-CTV----------KKSCLVLCTSAVSVEQWKQQFKMWS 322 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHH-HHh----------CCCEEEEeCcHHHHHHHHHHHHHhc
Confidence 5799999999999884 3 478999999999999866443 333 2348999999999999999999997
Q ss_pred hhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHh--------ccccccceeEEEEechhhhhcCCChHHHH
Q 003910 323 KSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM--------KALTMSRVTYLVLDEADRMFDLGFEPQIR 394 (787)
Q Consensus 323 ~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~--------~~~~l~~i~~lViDEah~m~~~~f~~~i~ 394 (787)
......+..++|+.... ......|+|+|+..+.....+ ..+.-..|.+||+||||++.. ....
T Consensus 323 ~l~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA----~~fr 393 (732)
T TIGR00603 323 TIDDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA----AMFR 393 (732)
T ss_pred CCCCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH----HHHH
Confidence 54445566666643221 112378999999988543211 112234689999999999753 4455
Q ss_pred HHhhhcCCCceEEEEeccCcHHHH--HHHHHHhCCCeEEEecccccc----cccceEEEEecC-----------------
Q 003910 395 SIVGQIRPDRQTLLFSATMPRKVE--KLAREILSDPVRVTVGEVGMA----NEDITQVVHVIP----------------- 451 (787)
Q Consensus 395 ~il~~~~~~~q~ll~SAT~~~~v~--~l~~~~l~~p~~i~v~~~~~~----~~~i~q~~~~~~----------------- 451 (787)
.++..+. ....|+||||+.+.-. ..+..+++ |........... ...+...-+.++
T Consensus 394 ~il~~l~-a~~RLGLTATP~ReD~~~~~L~~LiG-P~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k 471 (732)
T TIGR00603 394 RVLTIVQ-AHCKLGLTATLVREDDKITDLNFLIG-PKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKR 471 (732)
T ss_pred HHHHhcC-cCcEEEEeecCcccCCchhhhhhhcC-CeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhh
Confidence 5666554 3457999999864321 12223332 322222111000 001111101111
Q ss_pred -----CCcchHHHHHHhcCCc-CCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcC-CccEE
Q 003910 452 -----SDAEKLPWLLEKLPGM-IDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSG-VYHVL 524 (787)
Q Consensus 452 -----~~~~k~~~L~~~L~~~-~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G-~~~VL 524 (787)
....|+..+..++... ....++||||.....+..++..|. +..|||.+++.+|..+++.|+.| .+++|
T Consensus 472 ~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~vL 546 (732)
T TIGR00603 472 MLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHNPKVNTI 546 (732)
T ss_pred hHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhCCCccEE
Confidence 1123334333333322 145699999999999988888772 46699999999999999999875 88999
Q ss_pred EEehhhhccCCCCCccEEEEecCCC-CHHHHHHHhhccCCCCCCCcE-------EEEEEcccc--HHHHHHHHHHHHHcC
Q 003910 525 IATDVAARGLDIKSIKSVVNFDIAR-DMDMHVHRIGRTGRAGDKDGT-------AYTLVTQKE--ARFAGELVNSLIAAG 594 (787)
Q Consensus 525 VaT~v~~rGlDip~v~~VI~~d~p~-s~~~y~QriGR~gR~G~~~G~-------~i~l~~~~d--~~~~~~l~~~l~~~~ 594 (787)
|+|+++.+|||+|.+++||+++.|. +...|+||+||++|.+ ..+. .|+|++... ..++...-+.|...|
T Consensus 547 v~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~-~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl~~qG 625 (732)
T TIGR00603 547 FLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAK-KGSDAEEYNAFFYSLVSKDTQEMYYSTKRQRFLVDQG 625 (732)
T ss_pred EEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCC-CCCccccccceEEEEecCCchHHHHHHHHHHHHHHCC
Confidence 9999999999999999999999984 9999999999999997 3333 488998764 455556666665544
No 76
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=2.2e-31 Score=321.70 Aligned_cols=302 Identities=21% Similarity=0.308 Sum_probs=212.3
Q ss_pred HHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcC----cHHHHHHHHHHHHHHhhhcCc
Q 003910 252 QCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAP----TRELAHQIYLETKKFAKSHGI 327 (787)
Q Consensus 252 Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~P----treLa~Qi~~~~~~~~~~~~i 327 (787)
..+.+..|..++.+|++|+||||||.+ +|.+...... .....+++..| +++||.|+.+++..-. |-
T Consensus 79 r~~Il~ai~~~~VviI~GeTGSGKTTq--lPq~lle~g~-----g~~g~I~~TQPRRlAArsLA~RVA~El~~~l---G~ 148 (1294)
T PRK11131 79 KQDILEAIRDHQVVIVAGETGSGKTTQ--LPKICLELGR-----GVKGLIGHTQPRRLAARTVANRIAEELETEL---GG 148 (1294)
T ss_pred HHHHHHHHHhCCeEEEECCCCCCHHHH--HHHHHHHcCC-----CCCCceeeCCCcHHHHHHHHHHHHHHHhhhh---cc
Confidence 345566677778889999999999985 7855443221 11123444557 4677777777776422 22
Q ss_pred eEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechh-hhhcCCChHH-HHHHhhhcCCCce
Q 003910 328 RVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD-RMFDLGFEPQ-IRSIVGQIRPDRQ 405 (787)
Q Consensus 328 ~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah-~m~~~~f~~~-i~~il~~~~~~~q 405 (787)
.|.+-+.. ..+ ...+++|+|+|||+|++.+.... .|..+++||||||| ++++.+|... +..++. .+++.|
T Consensus 149 ~VGY~vrf---~~~---~s~~t~I~v~TpG~LL~~l~~d~-~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~-~rpdlK 220 (1294)
T PRK11131 149 CVGYKVRF---NDQ---VSDNTMVKLMTDGILLAEIQQDR-LLMQYDTIIIDEAHERSLNIDFILGYLKELLP-RRPDLK 220 (1294)
T ss_pred eeceeecC---ccc---cCCCCCEEEEChHHHHHHHhcCC-ccccCcEEEecCccccccccchHHHHHHHhhh-cCCCce
Confidence 22221111 111 13468999999999999987654 49999999999999 6899888754 333333 246789
Q ss_pred EEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCC-----cchHHHHHHhcCC--cCCCCCEEEEec
Q 003910 406 TLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSD-----AEKLPWLLEKLPG--MIDDGDVLVFAS 478 (787)
Q Consensus 406 ~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~-----~~k~~~L~~~L~~--~~~~~kvLVF~~ 478 (787)
+|+||||++. +.+.+.|...|+ +.+.... ..+.+.+..+... ...+..++..+.. ....+.+||||+
T Consensus 221 vILmSATid~--e~fs~~F~~apv-I~V~Gr~---~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLp 294 (1294)
T PRK11131 221 VIITSATIDP--ERFSRHFNNAPI-IEVSGRT---YPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMS 294 (1294)
T ss_pred EEEeeCCCCH--HHHHHHcCCCCE-EEEcCcc---ccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcC
Confidence 9999999974 456666655564 4443221 2344444333221 1122333332211 124578999999
Q ss_pred ccccHHHHHHHHHHcCCc---eeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEEEec---------
Q 003910 479 KKTTVDEIESQLAQKGFK---AAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFD--------- 546 (787)
Q Consensus 479 s~~~a~~l~~~L~~~g~~---v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~~d--------- 546 (787)
++.+++.+++.|...++. +..+||++++.+|..+++. .|..+|||||+++++|||||+|++||+++
T Consensus 295 g~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~ 372 (1294)
T PRK11131 295 GEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSY 372 (1294)
T ss_pred CHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCcccccccc
Confidence 999999999999987765 6789999999999999886 47889999999999999999999999986
Q ss_pred ------CC---CCHHHHHHHhhccCCCCCCCcEEEEEEccccHH
Q 003910 547 ------IA---RDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEAR 581 (787)
Q Consensus 547 ------~p---~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~ 581 (787)
+| -+..+|.||+|||||.+ +|.||.|++..+..
T Consensus 373 ~~~~~~Lp~~~iSkasa~QRaGRAGR~~--~G~c~rLyte~d~~ 414 (1294)
T PRK11131 373 RTKVQRLPIEPISQASANQRKGRCGRVS--EGICIRLYSEDDFL 414 (1294)
T ss_pred ccCcccCCeeecCHhhHhhhccccCCCC--CcEEEEeCCHHHHH
Confidence 33 35589999999999995 79999999986543
No 77
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=6.4e-31 Score=314.08 Aligned_cols=320 Identities=20% Similarity=0.209 Sum_probs=210.3
Q ss_pred CCCcHHHHHHHHHHHcC--CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhh
Q 003910 246 EKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (787)
Q Consensus 246 ~~ptp~Q~~ai~~il~g--rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~ 323 (787)
..|.|+|..++..++.. ..+|+++++|.|||+.+.+.+...+.. +...++|||||+ .|+.||..++.+++
T Consensus 151 ~~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~------g~~~rvLIVvP~-sL~~QW~~El~~kF- 222 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLT------GRAERVLILVPE-TLQHQWLVEMLRRF- 222 (956)
T ss_pred CCCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHc------CCCCcEEEEcCH-HHHHHHHHHHHHHh-
Confidence 46999999998887654 479999999999999976554443322 223458999998 89999999997664
Q ss_pred hcCceEEEEECCCChHHHH--HHHhcCCcEEEeCHHHHHHHHH-hccccccceeEEEEechhhhhcCC-ChHHHHHHhhh
Q 003910 324 SHGIRVSAVYGGMSKLDQF--KELKAGCEIVIATPGRLIDMLK-MKALTMSRVTYLVLDEADRMFDLG-FEPQIRSIVGQ 399 (787)
Q Consensus 324 ~~~i~v~~~~gg~~~~~~~--~~l~~~~dIIV~Tp~~L~~~l~-~~~~~l~~i~~lViDEah~m~~~~-f~~~i~~il~~ 399 (787)
++...++.++....... .......+++|+|++.|...-. ...+.-..|++|||||||++.... -.......+..
T Consensus 223 --~l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~ 300 (956)
T PRK04914 223 --NLRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQ 300 (956)
T ss_pred --CCCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHH
Confidence 45544443322110000 0111246899999988875211 112223478999999999987321 11111223333
Q ss_pred c-CCCceEEEEeccCcH-HHHHH-------------------------------HH-----------------HHhCCC-
Q 003910 400 I-RPDRQTLLFSATMPR-KVEKL-------------------------------AR-----------------EILSDP- 428 (787)
Q Consensus 400 ~-~~~~q~ll~SAT~~~-~v~~l-------------------------------~~-----------------~~l~~p- 428 (787)
+ .....+|++|||+-. ..+++ +. .++.+.
T Consensus 301 La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~ 380 (956)
T PRK04914 301 LAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQD 380 (956)
T ss_pred HhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccc
Confidence 3 234578999999831 11110 00 011000
Q ss_pred --------------------------------eEEEecccc----cccccceEEEEe-c---------------------
Q 003910 429 --------------------------------VRVTVGEVG----MANEDITQVVHV-I--------------------- 450 (787)
Q Consensus 429 --------------------------------~~i~v~~~~----~~~~~i~q~~~~-~--------------------- 450 (787)
..+...... .......+.+.. +
T Consensus 381 ~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~ 460 (956)
T PRK04914 381 IEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLY 460 (956)
T ss_pred hhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcC
Confidence 000000000 000000011000 0
Q ss_pred --------------CCCcchHHHHHHhcCCcCCCCCEEEEecccccHHHHHHHHH-HcCCceeeccCCCCHHHHHHHHHH
Q 003910 451 --------------PSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLA-QKGFKAAALHGDKDQASRMEILQK 515 (787)
Q Consensus 451 --------------~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~-~~g~~v~~lhg~~~~~eR~~~l~~ 515 (787)
.....|..+|.++|... ...++||||+++..++.|++.|. ..|+.+..+||+|++.+|.++++.
T Consensus 461 pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~-~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~ 539 (956)
T PRK04914 461 PEQIYQEFEDNATWWNFDPRVEWLIDFLKSH-RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAY 539 (956)
T ss_pred HHHHHHHHhhhhhccccCHHHHHHHHHHHhc-CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHH
Confidence 01123566677766654 35699999999999999999994 669999999999999999999999
Q ss_pred hhcC--CccEEEEehhhhccCCCCCccEEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEcc
Q 003910 516 FKSG--VYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ 577 (787)
Q Consensus 516 F~~G--~~~VLVaT~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~ 577 (787)
|+++ .++|||||+++++|+|++.+++|||||+|||+..|+||+||++|+|++ +.+.+++..
T Consensus 540 F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~-~~V~i~~~~ 602 (956)
T PRK04914 540 FADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQK-HDIQIHVPY 602 (956)
T ss_pred HhcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCC-ceEEEEEcc
Confidence 9984 599999999999999999999999999999999999999999999954 555444433
No 78
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=1.3e-31 Score=297.06 Aligned_cols=318 Identities=20% Similarity=0.348 Sum_probs=240.5
Q ss_pred CCCcHHHHHHHHHHH----cCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003910 246 EKPTSIQCQALPIIL----SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (787)
Q Consensus 246 ~~ptp~Q~~ai~~il----~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~ 321 (787)
.++++||.+++.|+. +|-++|+..+||.|||++ .|.+|.++.... ...||. |||||...|. .|.+++++|
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQ-tIs~l~yl~~~~---~~~GPf-LVi~P~StL~-NW~~Ef~rf 239 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQ-TISLLGYLKGRK---GIPGPF-LVIAPKSTLD-NWMNEFKRF 239 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHH-HHHHHHHHHHhc---CCCCCe-EEEeeHhhHH-HHHHHHHHh
Confidence 469999999999987 567899999999999998 567777775532 235776 8899998776 699999999
Q ss_pred hhhcCceEEEEECCCChHHHHH-HH--hcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHhh
Q 003910 322 AKSHGIRVSAVYGGMSKLDQFK-EL--KAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVG 398 (787)
Q Consensus 322 ~~~~~i~v~~~~gg~~~~~~~~-~l--~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~ 398 (787)
++ ++++++++|.......+. .+ ....+|+|+||+..+.. +..+.--.|.||||||||||.+. ...+..++.
T Consensus 240 ~P--~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiKN~--~s~L~~~lr 313 (971)
T KOG0385|consen 240 TP--SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIKNE--KSKLSKILR 313 (971)
T ss_pred CC--CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhcch--hhHHHHHHH
Confidence 98 789999999764443322 22 23589999999998774 33344457899999999999886 455667777
Q ss_pred hcCCCceEEEEeccCcHHHHHH----------------------------------------------------------
Q 003910 399 QIRPDRQTLLFSATMPRKVEKL---------------------------------------------------------- 420 (787)
Q Consensus 399 ~~~~~~q~ll~SAT~~~~v~~l---------------------------------------------------------- 420 (787)
.+....++|+...++.+++.+|
T Consensus 314 ~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLp 393 (971)
T KOG0385|consen 314 EFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLP 393 (971)
T ss_pred HhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCC
Confidence 7766665554444455555544
Q ss_pred -----------------------------------------------HHHHhCCCeEEEecccccccccceEEEEecCCC
Q 003910 421 -----------------------------------------------AREILSDPVRVTVGEVGMANEDITQVVHVIPSD 453 (787)
Q Consensus 421 -----------------------------------------------~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~ 453 (787)
++++|.+|+.+.....+... .....+...
T Consensus 394 pKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~py----ttdehLv~n 469 (971)
T KOG0385|consen 394 PKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPY----TTDEHLVTN 469 (971)
T ss_pred CcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCC----CcchHHHhc
Confidence 33334444433321111000 001111134
Q ss_pred cchHHHHHHhcCCcCCCC-CEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcC---CccEEEEehh
Q 003910 454 AEKLPWLLEKLPGMIDDG-DVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSG---VYHVLIATDV 529 (787)
Q Consensus 454 ~~k~~~L~~~L~~~~~~~-kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G---~~~VLVaT~v 529 (787)
..|+..|..+|..+...| +||||.+....++.|.+|+.-.+|.++.|.|.++..+|..+|+.|... .+-+|++|.+
T Consensus 470 SGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRA 549 (971)
T KOG0385|consen 470 SGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRA 549 (971)
T ss_pred CcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccc
Confidence 567777777776665544 999999999999999999999999999999999999999999999764 4668999999
Q ss_pred hhccCCCCCccEEEEecCCCCHHHHHHHhhccCCCCCC-CcEEEEEEcccc
Q 003910 530 AARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDK-DGTAYTLVTQKE 579 (787)
Q Consensus 530 ~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G~~-~G~~i~l~~~~d 579 (787)
++.|||+..+++||+||..|||..-+|++.||+|+|++ +.++|.|++.+-
T Consensus 550 GGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitent 600 (971)
T KOG0385|consen 550 GGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENT 600 (971)
T ss_pred cccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccch
Confidence 99999999999999999999999999999999999954 456777887764
No 79
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.97 E-value=4.2e-30 Score=306.64 Aligned_cols=334 Identities=23% Similarity=0.328 Sum_probs=254.3
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHH
Q 003910 233 STQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAH 312 (787)
Q Consensus 233 ~~~l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~ 312 (787)
...+..++.+.++..|+.+|.+|+..+.+|+|+|++.+||||||.+|++|++.+++..+. -++|+|-||++||+
T Consensus 56 ~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~------a~AL~lYPtnALa~ 129 (851)
T COG1205 56 DESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPS------ARALLLYPTNALAN 129 (851)
T ss_pred hhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcC------ccEEEEechhhhHh
Confidence 334577888888999999999999999999999999999999999999999999988652 26899999999999
Q ss_pred HHHHHHHHHhhhcC--ceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhc----cccccceeEEEEechhhhhc
Q 003910 313 QIYLETKKFAKSHG--IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK----ALTMSRVTYLVLDEADRMFD 386 (787)
Q Consensus 313 Qi~~~~~~~~~~~~--i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~----~~~l~~i~~lViDEah~m~~ 386 (787)
...+.++++....+ +++..+.|.....+...-+...++||++||.+|..++.+. ...+.+++||||||+|..-.
T Consensus 130 DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrG 209 (851)
T COG1205 130 DQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRG 209 (851)
T ss_pred hHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccc
Confidence 99999999998877 6666666666655544555677999999999998866543 23367799999999996432
Q ss_pred CCChHHHHH----Hh---hhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecC-C------
Q 003910 387 LGFEPQIRS----IV---GQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIP-S------ 452 (787)
Q Consensus 387 ~~f~~~i~~----il---~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~-~------ 452 (787)
. |...+-. ++ .......|+|..|||+.+. .+++..+........+.............+ ..+ .
T Consensus 210 v-~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~-~~p~~~~~~~~ 286 (851)
T COG1205 210 V-QGSEVALLLRRLLRRLRRYGSPLQIICTSATLANP-GEFAEELFGRDFEVPVDEDGSPRGLRYFVR-REPPIRELAES 286 (851)
T ss_pred c-chhHHHHHHHHHHHHHhccCCCceEEEEeccccCh-HHHHHHhcCCcceeeccCCCCCCCceEEEE-eCCcchhhhhh
Confidence 2 3333333 32 3334578999999998755 556777777766664444333332222222 221 0
Q ss_pred -CcchHHHHHHhcCCcC-CCCCEEEEecccccHHHHH----HHHHHcC----CceeeccCCCCHHHHHHHHHHhhcCCcc
Q 003910 453 -DAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIE----SQLAQKG----FKAAALHGDKDQASRMEILQKFKSGVYH 522 (787)
Q Consensus 453 -~~~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~----~~L~~~g----~~v~~lhg~~~~~eR~~~l~~F~~G~~~ 522 (787)
...+...+..++.... ..-++|+|+.++..++.+. ..+...+ ..+..+++++...+|.++...|+.|+..
T Consensus 287 ~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~ 366 (851)
T COG1205 287 IRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELL 366 (851)
T ss_pred cccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCcc
Confidence 0122222222222222 3449999999999999987 4455555 6789999999999999999999999999
Q ss_pred EEEEehhhhccCCCCCccEEEEecCCC-CHHHHHHHhhccCCCCCCCcEEEEEEc
Q 003910 523 VLIATDVAARGLDIKSIKSVVNFDIAR-DMDMHVHRIGRTGRAGDKDGTAYTLVT 576 (787)
Q Consensus 523 VLVaT~v~~rGlDip~v~~VI~~d~p~-s~~~y~QriGR~gR~G~~~G~~i~l~~ 576 (787)
++++|.+++-|+||-.++.||++..|. +..+++||.||+||.+ +....+.+..
T Consensus 367 ~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~-~~~l~~~v~~ 420 (851)
T COG1205 367 GVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRG-QESLVLVVLR 420 (851)
T ss_pred EEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCC-CCceEEEEeC
Confidence 999999999999999999999999999 8999999999999998 4455554444
No 80
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.97 E-value=1.2e-30 Score=272.45 Aligned_cols=335 Identities=21% Similarity=0.315 Sum_probs=247.7
Q ss_pred HHHHHHHHC-CCCC-CcHHHHHHHHHHHcC-CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHH
Q 003910 235 QLMHAISKQ-GYEK-PTSIQCQALPIILSG-RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELA 311 (787)
Q Consensus 235 ~l~~~l~~~-g~~~-ptp~Q~~ai~~il~g-rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa 311 (787)
.+.++|++. |+.+ -++.|.+++..+..+ +||.+++|||+||+++|.||.|.+ +.+.||+.|..+|+
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~-----------~gITIV~SPLiALI 74 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH-----------GGITIVISPLIALI 74 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh-----------CCeEEEehHHHHHH
Confidence 355666664 5554 379999999998876 699999999999999999999876 34789999999999
Q ss_pred HHHHHHHHHHhhhcCceEEEEECCCChHHH---HHHHh---cCCcEEEeCHHHHHH-----HHHhccccccceeEEEEec
Q 003910 312 HQIYLETKKFAKSHGIRVSAVYGGMSKLDQ---FKELK---AGCEIVIATPGRLID-----MLKMKALTMSRVTYLVLDE 380 (787)
Q Consensus 312 ~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~---~~~l~---~~~dIIV~Tp~~L~~-----~l~~~~~~l~~i~~lViDE 380 (787)
....+.+.++ .+.+..+..-.+..+. +.+|. ....|+..||+.... +|+ ...+-..+.|+||||
T Consensus 75 kDQiDHL~~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn-~L~~r~~L~Y~vVDE 149 (641)
T KOG0352|consen 75 KDQIDHLKRL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLN-GLANRDVLRYIVVDE 149 (641)
T ss_pred HHHHHHHHhc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHH-HHhhhceeeeEEech
Confidence 8888877776 5555555444443332 22332 357899999997532 221 122234578999999
Q ss_pred hhhhhcCC--ChHHHHHH--hhhcCCCceEEEEeccCcHHHHHHHHHH--hCCCeEEEecccccccccceEEEEecCCCc
Q 003910 381 ADRMFDLG--FEPQIRSI--VGQIRPDRQTLLFSATMPRKVEKLAREI--LSDPVRVTVGEVGMANEDITQVVHVIPSDA 454 (787)
Q Consensus 381 ah~m~~~~--f~~~i~~i--l~~~~~~~q~ll~SAT~~~~v~~l~~~~--l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~ 454 (787)
||.+..|| |.+.+..+ |+..-++...|.++||..+.+++-+-.- +.+|+.+.-. +.-..++..-+.+-..-.
T Consensus 150 AHCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkT--P~FR~NLFYD~~~K~~I~ 227 (641)
T KOG0352|consen 150 AHCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKT--PTFRDNLFYDNHMKSFIT 227 (641)
T ss_pred hhhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccC--cchhhhhhHHHHHHHHhh
Confidence 99999997 66666544 3333467789999999999887765443 4566544322 222222221111110011
Q ss_pred chHHHHHH----hcCCc--------CCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcc
Q 003910 455 EKLPWLLE----KLPGM--------IDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYH 522 (787)
Q Consensus 455 ~k~~~L~~----~L~~~--------~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~ 522 (787)
+-+..|.+ .|... ...|=-||||.|++.|++++-.|...|++...+|.++...+|..+.+.|+++++.
T Consensus 228 D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~P 307 (641)
T KOG0352|consen 228 DCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIP 307 (641)
T ss_pred hHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCC
Confidence 11122221 12110 0123479999999999999999999999999999999999999999999999999
Q ss_pred EEEEehhhhccCCCCCccEEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEccccHHHHHHHHH
Q 003910 523 VLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVN 588 (787)
Q Consensus 523 VLVaT~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~ 588 (787)
||+||..+++|+|-|+|+.||++++|.|+.-|.|-.||+||.| +...|-+++..+|...+.-|+.
T Consensus 308 vI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDG-k~SyCRLYYsR~D~~~i~FLi~ 372 (641)
T KOG0352|consen 308 VIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDG-KRSYCRLYYSRQDKNALNFLVS 372 (641)
T ss_pred EEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCC-CccceeeeecccchHHHHHHHh
Confidence 9999999999999999999999999999999999999999999 7899999999999877766654
No 81
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.97 E-value=3.6e-30 Score=304.83 Aligned_cols=328 Identities=20% Similarity=0.283 Sum_probs=262.4
Q ss_pred HHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHH
Q 003910 241 SKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKK 320 (787)
Q Consensus 241 ~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~ 320 (787)
...|...++|-|.++|..++.|+|+++..|||.||+++|.||++.. ++..|||.|...|++.+...+.+
T Consensus 258 ~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~-----------~gitvVISPL~SLm~DQv~~L~~ 326 (941)
T KOG0351|consen 258 EVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL-----------GGVTVVISPLISLMQDQVTHLSK 326 (941)
T ss_pred HHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc-----------CCceEEeccHHHHHHHHHHhhhh
Confidence 3458899999999999999999999999999999999999998754 45789999999999766544433
Q ss_pred HhhhcCceEEEEECCCChHHH---HHHHhcC---CcEEEeCHHHHHHHH--Hhccccccc---eeEEEEechhhhhcCC-
Q 003910 321 FAKSHGIRVSAVYGGMSKLDQ---FKELKAG---CEIVIATPGRLIDML--KMKALTMSR---VTYLVLDEADRMFDLG- 388 (787)
Q Consensus 321 ~~~~~~i~v~~~~gg~~~~~~---~~~l~~~---~dIIV~Tp~~L~~~l--~~~~~~l~~---i~~lViDEah~m~~~~- 388 (787)
.+|...++.++....++ ++.+..+ ++|+..||+++...- ......|.. +.++||||||....|+
T Consensus 327 ----~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgH 402 (941)
T KOG0351|consen 327 ----KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGH 402 (941)
T ss_pred ----cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcc
Confidence 48999999999887644 3344443 899999999986532 222333444 8999999999999997
Q ss_pred -ChHHHHHHhh--hcCCCceEEEEeccCcHHHHHHHHHHhC--CCeEEEecccccccccceEEEEecCCCcchHHHHHHh
Q 003910 389 -FEPQIRSIVG--QIRPDRQTLLFSATMPRKVEKLAREILS--DPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEK 463 (787)
Q Consensus 389 -f~~~i~~il~--~~~~~~q~ll~SAT~~~~v~~l~~~~l~--~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~ 463 (787)
|.+..+.+.. .-.+...+|.+|||....++.-+...+. +|..+. ......++...+..- ........++..
T Consensus 403 dFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~---~sfnR~NL~yeV~~k-~~~~~~~~~~~~ 478 (941)
T KOG0351|consen 403 DFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFK---SSFNRPNLKYEVSPK-TDKDALLDILEE 478 (941)
T ss_pred cccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceec---ccCCCCCceEEEEec-cCccchHHHHHH
Confidence 7777665432 2234478999999998888777666655 343222 122333444333322 113444555666
Q ss_pred cCCcCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEE
Q 003910 464 LPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVV 543 (787)
Q Consensus 464 L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI 543 (787)
+........+||||.++.+|+.++..|...++.+..+|.+|+..+|..+...|..++++|+|||=++++|||.|+|+.||
T Consensus 479 ~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~Vi 558 (941)
T KOG0351|consen 479 SKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVI 558 (941)
T ss_pred hhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEE
Confidence 66677788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHHhhccCCCCCCCcEEEEEEccccHHHHHHHHH
Q 003910 544 NFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVN 588 (787)
Q Consensus 544 ~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~ 588 (787)
+|.+|.+++.|.|-+||+||.| ....|++|+...|...+..++.
T Consensus 559 H~~lPks~E~YYQE~GRAGRDG-~~s~C~l~y~~~D~~~l~~ll~ 602 (941)
T KOG0351|consen 559 HYSLPKSFEGYYQEAGRAGRDG-LPSSCVLLYGYADISELRRLLT 602 (941)
T ss_pred ECCCchhHHHHHHhccccCcCC-CcceeEEecchhHHHHHHHHHH
Confidence 9999999999999999999999 6899999999988776665554
No 82
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=4.1e-30 Score=293.57 Aligned_cols=334 Identities=21% Similarity=0.261 Sum_probs=247.8
Q ss_pred CCCCCCcHHHHHHHHHHHc-CCCEEEEccCCCchhHHHHHHHHHHHhcC--cccccCCCCEEEEEcCcHHHHHHHHHHHH
Q 003910 243 QGYEKPTSIQCQALPIILS-GRDIIGIAKTGSGKTAAFVLPMIVHIMDQ--PELQKEEGPIGVICAPTRELAHQIYLETK 319 (787)
Q Consensus 243 ~g~~~ptp~Q~~ai~~il~-grdvii~a~TGsGKTla~llp~l~~l~~~--~~~~~~~~p~vLIl~PtreLa~Qi~~~~~ 319 (787)
.+|..+..+|..++|.++. ..|+|||||||+|||..|+|.+|+.+..+ .-....+.-++|+|+|+++||..+++.+.
T Consensus 106 f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~ 185 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFS 185 (1230)
T ss_pred ccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHh
Confidence 3667889999999999985 47999999999999999999999988752 11223456789999999999999999999
Q ss_pred HHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhcc---ccccceeEEEEechhhhhcCCChHHHHHH
Q 003910 320 KFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKA---LTMSRVTYLVLDEADRMFDLGFEPQIRSI 396 (787)
Q Consensus 320 ~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~---~~l~~i~~lViDEah~m~~~~f~~~i~~i 396 (787)
+-+...|+.|.-++|.......- ...++|||+||+.+--.-++.. ..+..+.+|||||+|.+-+. ..+.++.|
T Consensus 186 kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~-RGpvlEti 261 (1230)
T KOG0952|consen 186 KKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDD-RGPVLETI 261 (1230)
T ss_pred hhcccccceEEEecCcchhhHHH---HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCc-ccchHHHH
Confidence 88888899999999987654432 2349999999999743222211 12567899999999976654 56777777
Q ss_pred hhhc-------CCCceEEEEeccCcHHHHHHHHHHhCCCe-EEEecccccccccceEEEEecCCCc----------chHH
Q 003910 397 VGQI-------RPDRQTLLFSATMPRKVEKLAREILSDPV-RVTVGEVGMANEDITQVVHVIPSDA----------EKLP 458 (787)
Q Consensus 397 l~~~-------~~~~q~ll~SAT~~~~v~~l~~~~l~~p~-~i~v~~~~~~~~~i~q~~~~~~~~~----------~k~~ 458 (787)
+.++ ....++|++|||+|+ +++++.++-.+|. -+..-.....+..+.+.+.-+.... ....
T Consensus 262 VaRtlr~vessqs~IRivgLSATlPN-~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~ 340 (1230)
T KOG0952|consen 262 VARTLRLVESSQSMIRIVGLSATLPN-YEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYD 340 (1230)
T ss_pred HHHHHHHHHhhhhheEEEEeeccCCC-HHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHH
Confidence 6554 356789999999995 5788888766632 2222222233444556555443321 1122
Q ss_pred HHHHhcCCcCCCCCEEEEecccccHHHHHHHHHHc-----------------------CCceeeccCCCCHHHHHHHHHH
Q 003910 459 WLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK-----------------------GFKAAALHGDKDQASRMEILQK 515 (787)
Q Consensus 459 ~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~-----------------------g~~v~~lhg~~~~~eR~~~l~~ 515 (787)
.+.+.+. .+.++||||.++......++.|.+. ...+.+.|.+|...+|..+.+.
T Consensus 341 kv~e~~~---~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~ 417 (1230)
T KOG0952|consen 341 KVVEFLQ---EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKE 417 (1230)
T ss_pred HHHHHHH---cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHH
Confidence 2233332 3568999999999999999988763 1347789999999999999999
Q ss_pred hhcCCccEEEEehhhhccCCCCCccEEE----EecCCC------CHHHHHHHhhccCCCC-CCCcEEEEEEccccHHHHH
Q 003910 516 FKSGVYHVLIATDVAARGLDIKSIKSVV----NFDIAR------DMDMHVHRIGRTGRAG-DKDGTAYTLVTQKEARFAG 584 (787)
Q Consensus 516 F~~G~~~VLVaT~v~~rGlDip~v~~VI----~~d~p~------s~~~y~QriGR~gR~G-~~~G~~i~l~~~~d~~~~~ 584 (787)
|..|.++||+||..++.|+|+|.-.++| .||.-. .+.+.+|.+||+||.. ...|.++++.+.+-...+.
T Consensus 418 F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~ 497 (1230)
T KOG0952|consen 418 FKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYE 497 (1230)
T ss_pred HhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHH
Confidence 9999999999999999999999754444 355443 5778899999999987 4568888777665444433
No 83
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.97 E-value=3.5e-30 Score=308.60 Aligned_cols=320 Identities=18% Similarity=0.273 Sum_probs=221.1
Q ss_pred CCCcHHHHHHHHHHH----cCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003910 246 EKPTSIQCQALPIIL----SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (787)
Q Consensus 246 ~~ptp~Q~~ai~~il----~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~ 321 (787)
.+++|||.+++.|++ ++.++|++.+||.|||++. +.++.++.... .....+|||||. .|..||.+++.+|
T Consensus 168 ~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQa-IalL~~L~~~~----~~~gp~LIVvP~-SlL~nW~~Ei~kw 241 (1033)
T PLN03142 168 GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQT-ISLLGYLHEYR----GITGPHMVVAPK-STLGNWMNEIRRF 241 (1033)
T ss_pred cchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHH-HHHHHHHHHhc----CCCCCEEEEeCh-HHHHHHHHHHHHH
Confidence 378999999999986 5789999999999999984 44555554321 112236999997 6677999999999
Q ss_pred hhhcCceEEEEECCCChHHHHHH--H-hcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHhh
Q 003910 322 AKSHGIRVSAVYGGMSKLDQFKE--L-KAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVG 398 (787)
Q Consensus 322 ~~~~~i~v~~~~gg~~~~~~~~~--l-~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~ 398 (787)
++ .++++.++|.......... + ...++|||+||+.+..... .+.-..|.+|||||||+|.+. ...+..++.
T Consensus 242 ~p--~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~~VIvDEAHrIKN~--~Sklskalr 315 (1033)
T PLN03142 242 CP--VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSWRYIIIDEAHRIKNE--NSLLSKTMR 315 (1033)
T ss_pred CC--CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH--HhccCCCCEEEEcCccccCCH--HHHHHHHHH
Confidence 86 5677777775443332221 1 2358999999999876432 233346889999999999874 345556666
Q ss_pred hcCCCceEEEEeccC-cHHHHHHHHHH--h-CC--------------------------------CeEEEe--ccccccc
Q 003910 399 QIRPDRQTLLFSATM-PRKVEKLAREI--L-SD--------------------------------PVRVTV--GEVGMAN 440 (787)
Q Consensus 399 ~~~~~~q~ll~SAT~-~~~v~~l~~~~--l-~~--------------------------------p~~i~v--~~~~~~~ 440 (787)
.+.. ...+++|+|+ .+.+.+|...+ + .+ |+.+.- .......
T Consensus 316 ~L~a-~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~L 394 (1033)
T PLN03142 316 LFST-NYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGL 394 (1033)
T ss_pred Hhhc-CcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhC
Confidence 6654 3457889995 33333331100 0 00 000000 0000000
Q ss_pred ccceEEEEec--------------------------------------------------------------CCCcchHH
Q 003910 441 EDITQVVHVI--------------------------------------------------------------PSDAEKLP 458 (787)
Q Consensus 441 ~~i~q~~~~~--------------------------------------------------------------~~~~~k~~ 458 (787)
+.....++.+ .....|+.
T Consensus 395 PpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~ 474 (1033)
T PLN03142 395 PPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMV 474 (1033)
T ss_pred CCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHH
Confidence 0000000000 01134555
Q ss_pred HHHHhcCCcC-CCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcC---CccEEEEehhhhccC
Q 003910 459 WLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSG---VYHVLIATDVAARGL 534 (787)
Q Consensus 459 ~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G---~~~VLVaT~v~~rGl 534 (787)
.|..+|.... ...+||||++....++.|.++|...++.++.|||.++..+|..+++.|+.. .+.+||+|.+++.||
T Consensus 475 lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGI 554 (1033)
T PLN03142 475 LLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGI 554 (1033)
T ss_pred HHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCC
Confidence 5555554433 245999999999999999999999999999999999999999999999763 346799999999999
Q ss_pred CCCCccEEEEecCCCCHHHHHHHhhccCCCCCCCc-EEEEEEccc
Q 003910 535 DIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDG-TAYTLVTQK 578 (787)
Q Consensus 535 Dip~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G-~~i~l~~~~ 578 (787)
|+..+++||+||+||||..+.|++||++|+|++.. .+|.|++..
T Consensus 555 NLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~g 599 (1033)
T PLN03142 555 NLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEY 599 (1033)
T ss_pred chhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCC
Confidence 99999999999999999999999999999996544 466777764
No 84
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=3.7e-29 Score=294.02 Aligned_cols=402 Identities=20% Similarity=0.238 Sum_probs=295.4
Q ss_pred ccccCCCHHHHHHHHHHcCceecc--CCC-----CCccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC----
Q 003910 194 ASISGMSEQDVMEYKKSLAIRVSG--FDV-----PRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSG---- 262 (787)
Q Consensus 194 ~~i~~~s~~~~~~~~~~~~i~v~g--~~~-----P~pi~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~g---- 262 (787)
+.+.+|....|...|.+..-.+.. ..+ -+....=-.+..+..++..+...---..||-|..||..+...
T Consensus 534 p~L~kLG~~~W~k~K~K~~~~v~diA~eLi~lyA~R~~~~G~af~~d~~~q~~F~~~FPyeET~DQl~AI~eVk~DM~~~ 613 (1139)
T COG1197 534 PKLHKLGGGAWKKAKAKARKKVRDIAAELIKLYAKRQAKKGFAFPPDTEWQEEFEASFPYEETPDQLKAIEEVKRDMESG 613 (1139)
T ss_pred ccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCChHHHHHHHhcCCCcCCHHHHHHHHHHHHHhccC
Confidence 447777778888877665322110 000 000000112344566677776654446899999999998743
Q ss_pred --CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHH
Q 003910 263 --RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (787)
Q Consensus 263 --rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~ 340 (787)
.|-|+|+..|-|||-+++-+++..++ +|++|.|||||.-||+|.++.|+.-+.+++++|..+..-.+..+
T Consensus 614 kpMDRLiCGDVGFGKTEVAmRAAFkAV~--------~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE 685 (1139)
T COG1197 614 KPMDRLICGDVGFGKTEVAMRAAFKAVM--------DGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKE 685 (1139)
T ss_pred CcchheeecCcCCcHHHHHHHHHHHHhc--------CCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHH
Confidence 48999999999999999999998884 47889999999999999999999999999999988877666655
Q ss_pred HH---HHHhcC-CcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEeccCcHH
Q 003910 341 QF---KELKAG-CEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRK 416 (787)
Q Consensus 341 ~~---~~l~~~-~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~ 416 (787)
+. ..++.| .||||+|+.-| ...+.+.++.+|||||-|+ |...-..-+..++.+..+|-||||+-|.
T Consensus 686 ~~~il~~la~G~vDIvIGTHrLL-----~kdv~FkdLGLlIIDEEqR-----FGVk~KEkLK~Lr~~VDvLTLSATPIPR 755 (1139)
T COG1197 686 QKEILKGLAEGKVDIVIGTHRLL-----SKDVKFKDLGLLIIDEEQR-----FGVKHKEKLKELRANVDVLTLSATPIPR 755 (1139)
T ss_pred HHHHHHHHhcCCccEEEechHhh-----CCCcEEecCCeEEEechhh-----cCccHHHHHHHHhccCcEEEeeCCCCcc
Confidence 53 344444 89999996433 4566788999999999999 7778888888999999999999996444
Q ss_pred HHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcchHHHHHHhcCCcCCCCCEEEEecccccHHHHHHHHHHc--C
Q 003910 417 VEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK--G 494 (787)
Q Consensus 417 v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~--g 494 (787)
.-.++..-+++...|.. .+.....|...+..... .--...+ +++...+|++...+|.++..+.++..|+.. .
T Consensus 756 TL~Msm~GiRdlSvI~T--PP~~R~pV~T~V~~~d~-~~ireAI---~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPE 829 (1139)
T COG1197 756 TLNMSLSGIRDLSVIAT--PPEDRLPVKTFVSEYDD-LLIREAI---LRELLRGGQVFYVHNRVESIEKKAERLRELVPE 829 (1139)
T ss_pred hHHHHHhcchhhhhccC--CCCCCcceEEEEecCCh-HHHHHHH---HHHHhcCCEEEEEecchhhHHHHHHHHHHhCCc
Confidence 44455555555443332 22223333333322211 1111222 333445889999999999999999999886 4
Q ss_pred CceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEEEecCCCC-HHHHHHHhhccCCCCCCCcEEEE
Q 003910 495 FKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARD-MDMHVHRIGRTGRAGDKDGTAYT 573 (787)
Q Consensus 495 ~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~~d~p~s-~~~y~QriGR~gR~G~~~G~~i~ 573 (787)
.++++.||.|+..+-+.++..|.+|+++|||||.+++.|||||+++++|+-+...- ..+..|--||+||.. +.+.||.
T Consensus 830 arI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~-~~AYAYf 908 (1139)
T COG1197 830 ARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSN-KQAYAYF 908 (1139)
T ss_pred eEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCcc-ceEEEEE
Confidence 57999999999999999999999999999999999999999999999999887764 566667779999987 7799999
Q ss_pred EEccc--cHHHHHHHHHHH---HHcCCCccHHHHHHHHhcCcccccccccCCCCCCCCCCCCC
Q 003910 574 LVTQK--EARFAGELVNSL---IAAGQNVSMELMDLAMKDGRFRSKRDARKGGGKKGKGRGGA 631 (787)
Q Consensus 574 l~~~~--d~~~~~~l~~~l---~~~~~~vp~~l~~~a~~~~~~~~~~~~r~~g~~~g~g~ggg 631 (787)
++.+. -...+.+.++.+ ...|..+..++.|+.+ |+.|+..|..++|.
T Consensus 909 l~p~~k~lT~~A~kRL~aI~~~~~LGaGf~lA~~DLeI-----------RGaGNlLG~eQSG~ 960 (1139)
T COG1197 909 LYPPQKALTEDAEKRLEAIASFTELGAGFKLAMHDLEI-----------RGAGNLLGEEQSGH 960 (1139)
T ss_pred eecCccccCHHHHHHHHHHHhhhhcCchHHHHhcchhc-----------cccccccCccccCc
Confidence 98853 234444444444 4466677666666666 78888888888775
No 85
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.97 E-value=4.6e-30 Score=311.50 Aligned_cols=303 Identities=20% Similarity=0.310 Sum_probs=215.6
Q ss_pred HHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEE
Q 003910 254 QALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVY 333 (787)
Q Consensus 254 ~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~ 333 (787)
+.+..|..++.+|++|+||||||.+ +|.+...... .....+++.-|.|..|..++..+.+.. +..+...+
T Consensus 74 ~Il~~l~~~~vvii~g~TGSGKTTq--lPq~lle~~~-----~~~~~I~~tQPRRlAA~svA~RvA~el---g~~lG~~V 143 (1283)
T TIGR01967 74 DIAEAIAENQVVIIAGETGSGKTTQ--LPKICLELGR-----GSHGLIGHTQPRRLAARTVAQRIAEEL---GTPLGEKV 143 (1283)
T ss_pred HHHHHHHhCceEEEeCCCCCCcHHH--HHHHHHHcCC-----CCCceEecCCccHHHHHHHHHHHHHHh---CCCcceEE
Confidence 4566666778899999999999985 6765443221 112356777899888877765555543 55555555
Q ss_pred CCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechh-hhhcCCChHH-HHHHhhhcCCCceEEEEec
Q 003910 334 GGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD-RMFDLGFEPQ-IRSIVGQIRPDRQTLLFSA 411 (787)
Q Consensus 334 gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah-~m~~~~f~~~-i~~il~~~~~~~q~ll~SA 411 (787)
|.....+.. ......|+|+|+|+|+..+.... .|..+++||||||| ++++.+|.-. +..++. .+++.|+|+|||
T Consensus 144 GY~vR~~~~--~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~-~rpdLKlIlmSA 219 (1283)
T TIGR01967 144 GYKVRFHDQ--VSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLP-RRPDLKIIITSA 219 (1283)
T ss_pred eeEEcCCcc--cCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHh-hCCCCeEEEEeC
Confidence 543222111 13457899999999999886654 48999999999999 6999888765 444443 457899999999
Q ss_pred cCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCC-----cchHHHHHHhcCCc--CCCCCEEEEecccccHH
Q 003910 412 TMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSD-----AEKLPWLLEKLPGM--IDDGDVLVFASKKTTVD 484 (787)
Q Consensus 412 T~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~-----~~k~~~L~~~L~~~--~~~~kvLVF~~s~~~a~ 484 (787)
|+.. +.+++.|...|+ +.+.... ..+...+..+... ..+...+...+... ...+.+|||++++.+++
T Consensus 220 Tld~--~~fa~~F~~apv-I~V~Gr~---~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~ 293 (1283)
T TIGR01967 220 TIDP--ERFSRHFNNAPI-IEVSGRT---YPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGEREIR 293 (1283)
T ss_pred CcCH--HHHHHHhcCCCE-EEECCCc---ccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHH
Confidence 9974 456666655554 3332221 1233333322111 12223333322221 14579999999999999
Q ss_pred HHHHHHHHcC---CceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEEEecCCC------------
Q 003910 485 EIESQLAQKG---FKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIAR------------ 549 (787)
Q Consensus 485 ~l~~~L~~~g---~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~~d~p~------------ 549 (787)
.+++.|...+ +.+..|||.|++.+|.++++.+ +..+|||||+++++|||||+|++||+++.+.
T Consensus 294 ~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~ 371 (1283)
T TIGR01967 294 DAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQR 371 (1283)
T ss_pred HHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccc
Confidence 9999998864 4588999999999999987654 3468999999999999999999999988543
Q ss_pred ------CHHHHHHHhhccCCCCCCCcEEEEEEccccH
Q 003910 550 ------DMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (787)
Q Consensus 550 ------s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~ 580 (787)
+..+|.||.||+||.+ +|.||.|++..+.
T Consensus 372 L~~~~ISkasa~QRaGRAGR~~--~G~cyRLyte~~~ 406 (1283)
T TIGR01967 372 LPIEPISQASANQRKGRCGRVA--PGICIRLYSEEDF 406 (1283)
T ss_pred cCCccCCHHHHHHHhhhhCCCC--CceEEEecCHHHH
Confidence 5689999999999997 7999999987654
No 86
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.97 E-value=1e-28 Score=291.64 Aligned_cols=313 Identities=19% Similarity=0.254 Sum_probs=218.9
Q ss_pred CCCcHHHHHHHHHHHcC---CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHh
Q 003910 246 EKPTSIQCQALPIILSG---RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (787)
Q Consensus 246 ~~ptp~Q~~ai~~il~g---rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~ 322 (787)
..||++|.++++.+..+ +++++.++||||||.+|+.++...+. .+..+|||+||++|+.|+++.+++.+
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~--------~g~~vLvLvPt~~L~~Q~~~~l~~~f 214 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLA--------QGKQALVLVPEIALTPQMLARFRARF 214 (679)
T ss_pred CCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHH--------cCCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 46999999999999974 78999999999999999888766652 25679999999999999999998764
Q ss_pred hhcCceEEEEECCCChHHHH---HHHhc-CCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCC---hHHHH-
Q 003910 323 KSHGIRVSAVYGGMSKLDQF---KELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGF---EPQIR- 394 (787)
Q Consensus 323 ~~~~i~v~~~~gg~~~~~~~---~~l~~-~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f---~~~i~- 394 (787)
+..+..++++.+..+.. ..+.. ..+|||+|+..+. ..+.++.+|||||+|...-... ....+
T Consensus 215 ---g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~ 284 (679)
T PRK05580 215 ---GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARD 284 (679)
T ss_pred ---CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHH
Confidence 67889999998765543 33333 4799999998764 3577899999999997543221 11112
Q ss_pred -HHhhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEEeccccc--ccccceEEEEecCCC------cchHHHHHHhcC
Q 003910 395 -SIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGM--ANEDITQVVHVIPSD------AEKLPWLLEKLP 465 (787)
Q Consensus 395 -~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~--~~~~i~q~~~~~~~~------~~k~~~L~~~L~ 465 (787)
.++.....+.++|++|||++.+....+. -+....+....... ..+.+ ..+. +... ..-...+++.+.
T Consensus 285 va~~ra~~~~~~~il~SATps~~s~~~~~--~g~~~~~~l~~r~~~~~~p~v-~~id-~~~~~~~~~~~~ls~~l~~~i~ 360 (679)
T PRK05580 285 LAVVRAKLENIPVVLGSATPSLESLANAQ--QGRYRLLRLTKRAGGARLPEV-EIID-MRELLRGENGSFLSPPLLEAIK 360 (679)
T ss_pred HHHHHhhccCCCEEEEcCCCCHHHHHHHh--ccceeEEEeccccccCCCCeE-EEEe-chhhhhhcccCCCCHHHHHHHH
Confidence 2233345678999999998755443332 12222222221111 11111 1111 1000 001133444444
Q ss_pred CcCCC-CCEEEEeccc------------------------------------------------------------ccHH
Q 003910 466 GMIDD-GDVLVFASKK------------------------------------------------------------TTVD 484 (787)
Q Consensus 466 ~~~~~-~kvLVF~~s~------------------------------------------------------------~~a~ 484 (787)
+.+.. .++|||+|++ ..++
T Consensus 361 ~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e 440 (679)
T PRK05580 361 QRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTE 440 (679)
T ss_pred HHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHH
Confidence 43333 3788887752 1346
Q ss_pred HHHHHHHHc--CCceeeccCCCCH--HHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEEEecCC--CC--------
Q 003910 485 EIESQLAQK--GFKAAALHGDKDQ--ASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIA--RD-------- 550 (787)
Q Consensus 485 ~l~~~L~~~--g~~v~~lhg~~~~--~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~~d~p--~s-------- 550 (787)
.+++.|.+. +.++..+|+++.+ .+++.+++.|++|+++|||+|+++++|+|+|++++|+++|.+ .+
T Consensus 441 ~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~E 520 (679)
T PRK05580 441 RLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASE 520 (679)
T ss_pred HHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHH
Confidence 788888775 7889999999874 679999999999999999999999999999999999766544 22
Q ss_pred --HHHHHHHhhccCCCCCCCcEEEEEEccccHH
Q 003910 551 --MDMHVHRIGRTGRAGDKDGTAYTLVTQKEAR 581 (787)
Q Consensus 551 --~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~ 581 (787)
...|+|++||+||.+ +.|.+++.....+..
T Consensus 521 r~~~~l~q~~GRagR~~-~~g~viiqT~~p~~~ 552 (679)
T PRK05580 521 RTFQLLTQVAGRAGRAE-KPGEVLIQTYHPEHP 552 (679)
T ss_pred HHHHHHHHHHhhccCCC-CCCEEEEEeCCCCCH
Confidence 367899999999987 679999766554433
No 87
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.97 E-value=4.7e-29 Score=253.52 Aligned_cols=202 Identities=54% Similarity=0.880 Sum_probs=185.9
Q ss_pred ccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcC
Q 003910 227 FEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAP 306 (787)
Q Consensus 227 f~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~P 306 (787)
|+++++++.+.+.+.+.++..|+++|.++++.++++++++++++||+|||++|++|++.++.... ...++++||++|
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~---~~~~~~viii~p 77 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP---KKDGPQALILAP 77 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc---ccCCceEEEEcC
Confidence 67889999999999999999999999999999999999999999999999999999999987642 135789999999
Q ss_pred cHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhc
Q 003910 307 TRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFD 386 (787)
Q Consensus 307 treLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~ 386 (787)
|++|+.|+...++.+....++.+.+++|+.........+..+++|+|+||+.|..++......+..+.+|||||||.+.+
T Consensus 78 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~ 157 (203)
T cd00268 78 TRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLD 157 (203)
T ss_pred CHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhc
Confidence 99999999999999988778999999999988777666666899999999999999988878889999999999999999
Q ss_pred CCChHHHHHHhhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEE
Q 003910 387 LGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRV 431 (787)
Q Consensus 387 ~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i 431 (787)
.++...+..++..++..+|++++|||+++.+..++..++.+|+.+
T Consensus 158 ~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 158 MGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred cChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 999999999999999999999999999999999999999998765
No 88
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.96 E-value=1.5e-28 Score=274.19 Aligned_cols=315 Identities=22% Similarity=0.277 Sum_probs=228.1
Q ss_pred CCCcHHHHHHHHHHH----cCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003910 246 EKPTSIQCQALPIIL----SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (787)
Q Consensus 246 ~~ptp~Q~~ai~~il----~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~ 321 (787)
.++.|||+.++.|+. ++...|+..+||.|||++ ++.+|..|.....+. ..+|||||. .++.||..++..|
T Consensus 204 ~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQ-iisFLaaL~~S~k~~----~paLIVCP~-Tii~qW~~E~~~w 277 (923)
T KOG0387|consen 204 SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQ-IISFLAALHHSGKLT----KPALIVCPA-TIIHQWMKEFQTW 277 (923)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchh-HHHHHHHHhhccccc----CceEEEccH-HHHHHHHHHHHHh
Confidence 567899999999987 567899999999999998 566666665543222 348999998 5777999999999
Q ss_pred hhhcCceEEEEECCCChH--------HHHH-----HHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCC
Q 003910 322 AKSHGIRVSAVYGGMSKL--------DQFK-----ELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG 388 (787)
Q Consensus 322 ~~~~~i~v~~~~gg~~~~--------~~~~-----~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~ 388 (787)
.+ .++|.++++..... .... ....+.+|+|+|+..|.- ....+.-..|+|+|+||.|+|.+.
T Consensus 278 ~p--~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~--~~d~l~~~~W~y~ILDEGH~IrNp- 352 (923)
T KOG0387|consen 278 WP--PFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRI--QGDDLLGILWDYVILDEGHRIRNP- 352 (923)
T ss_pred Cc--ceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcc--cCcccccccccEEEecCcccccCC-
Confidence 87 67888887765521 1111 112357899999987754 223344557999999999999886
Q ss_pred ChHHHHHHhhhcCCCceEEEEecc-CcHHHHHHHHHH-------------------------------------------
Q 003910 389 FEPQIRSIVGQIRPDRQTLLFSAT-MPRKVEKLAREI------------------------------------------- 424 (787)
Q Consensus 389 f~~~i~~il~~~~~~~q~ll~SAT-~~~~v~~l~~~~------------------------------------------- 424 (787)
..++...+..++...+ |++|.| +.+++.+|..-|
T Consensus 353 -ns~islackki~T~~R-iILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~ 430 (923)
T KOG0387|consen 353 -NSKISLACKKIRTVHR-IILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAV 430 (923)
T ss_pred -ccHHHHHHHhccccce-EEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHH
Confidence 4456666666664444 445555 666666653221
Q ss_pred ------------------------------------------------------------------------hCCCeEEE
Q 003910 425 ------------------------------------------------------------------------LSDPVRVT 432 (787)
Q Consensus 425 ------------------------------------------------------------------------l~~p~~i~ 432 (787)
|.+|..+.
T Consensus 431 ~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~ 510 (923)
T KOG0387|consen 431 ALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLD 510 (923)
T ss_pred HHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCccccc
Confidence 11111111
Q ss_pred ecccccccccceEEEE--ecCCCcchHHHHHHhcCCcCCCC-CEEEEecccccHHHHHHHHH-HcCCceeeccCCCCHHH
Q 003910 433 VGEVGMANEDITQVVH--VIPSDAEKLPWLLEKLPGMIDDG-DVLVFASKKTTVDEIESQLA-QKGFKAAALHGDKDQAS 508 (787)
Q Consensus 433 v~~~~~~~~~i~q~~~--~~~~~~~k~~~L~~~L~~~~~~~-kvLVF~~s~~~a~~l~~~L~-~~g~~v~~lhg~~~~~e 508 (787)
-... ...+.-. -......|+..+..+|..+...+ ++|+|.+++.+++.|..+|. ..+|.++.+.|..+...
T Consensus 511 ~~~~-----~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~ 585 (923)
T KOG0387|consen 511 RRDE-----DEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAAL 585 (923)
T ss_pred Cccc-----ccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccch
Confidence 1000 0000000 00123456777777776665544 89999999999999999999 68999999999999999
Q ss_pred HHHHHHHhhcCC--ccEEEEehhhhccCCCCCccEEEEecCCCCHHHHHHHhhccCCCCCCCcE-EEEEEccc
Q 003910 509 RMEILQKFKSGV--YHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGT-AYTLVTQK 578 (787)
Q Consensus 509 R~~~l~~F~~G~--~~VLVaT~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~-~i~l~~~~ 578 (787)
|..+++.|+++. .-+|++|.+.+-|||+.+++.||+|||.|||.+-.|+.-|+.|.|++..+ +|.|++..
T Consensus 586 R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~g 658 (923)
T KOG0387|consen 586 RQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAG 658 (923)
T ss_pred hhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCC
Confidence 999999999875 34788999999999999999999999999999999999999999976665 55666653
No 89
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.96 E-value=4.6e-28 Score=249.28 Aligned_cols=335 Identities=19% Similarity=0.319 Sum_probs=259.4
Q ss_pred ccCCCHHHHHHHHHC-CCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCc
Q 003910 229 DCGFSTQLMHAISKQ-GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPT 307 (787)
Q Consensus 229 ~~~l~~~l~~~l~~~-g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~Pt 307 (787)
+++++.+..+.|+.. .+.+++|.|..+|+..+.+.+++++.|||-||+++|.+|+|.. ...+|||||.
T Consensus 75 ~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a-----------dg~alvi~pl 143 (695)
T KOG0353|consen 75 DFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA-----------DGFALVICPL 143 (695)
T ss_pred CCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc-----------CCceEeechh
Confidence 455666666666543 5688999999999999999999999999999999999999854 4568999999
Q ss_pred HHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHH-------hcCCcEEEeCHHHHHHH---HHh--ccccccceeE
Q 003910 308 RELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKEL-------KAGCEIVIATPGRLIDM---LKM--KALTMSRVTY 375 (787)
Q Consensus 308 reLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l-------~~~~dIIV~Tp~~L~~~---l~~--~~~~l~~i~~ 375 (787)
..|+....-.++.+ |+....+....+..+. +.+ .....+|..||+.+..- +.+ +.+....+.+
T Consensus 144 islmedqil~lkql----gi~as~lnansske~~-k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~ 218 (695)
T KOG0353|consen 144 ISLMEDQILQLKQL----GIDASMLNANSSKEEA-KRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKL 218 (695)
T ss_pred HHHHHHHHHHHHHh----CcchhhccCcccHHHH-HHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEE
Confidence 99998877777776 7776666655554332 221 12368999999998542 221 3445678899
Q ss_pred EEEechhhhhcCC--ChHHHH--HHhhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecC
Q 003910 376 LVLDEADRMFDLG--FEPQIR--SIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIP 451 (787)
Q Consensus 376 lViDEah~m~~~~--f~~~i~--~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~ 451 (787)
|.|||+|....|| |.+.+. .++.+--+...+|.++||..+.+..-++.++.-...+.. ..+...+++...+..-+
T Consensus 219 iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf-~a~fnr~nl~yev~qkp 297 (695)
T KOG0353|consen 219 IAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTF-RAGFNRPNLKYEVRQKP 297 (695)
T ss_pred EeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhhee-ecccCCCCceeEeeeCC
Confidence 9999999999987 555443 455555567889999999998887777766542211111 12233445555444443
Q ss_pred CC-cchHHHHHHhcCCcCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhh
Q 003910 452 SD-AEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVA 530 (787)
Q Consensus 452 ~~-~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~ 530 (787)
.. .+-...+..++..-.....-||||-++.+|+.++..|+..|+....+|..|.+.+|.-+-+.|-.|++.|+|||-+.
T Consensus 298 ~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvaf 377 (695)
T KOG0353|consen 298 GNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAF 377 (695)
T ss_pred CChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeee
Confidence 32 23345566666665566678999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCccEEEEecCCCCHHHHHH-------------------------------------------HhhccCCCCCC
Q 003910 531 ARGLDIKSIKSVVNFDIARDMDMHVH-------------------------------------------RIGRTGRAGDK 567 (787)
Q Consensus 531 ~rGlDip~v~~VI~~d~p~s~~~y~Q-------------------------------------------riGR~gR~G~~ 567 (787)
++|+|-|+|+.||+..+|.+++.|.| -.||+||.+ .
T Consensus 378 gmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~-~ 456 (695)
T KOG0353|consen 378 GMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDD-M 456 (695)
T ss_pred cccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCC-C
Confidence 99999999999999999999999999 569999998 5
Q ss_pred CcEEEEEEccccHH
Q 003910 568 DGTAYTLVTQKEAR 581 (787)
Q Consensus 568 ~G~~i~l~~~~d~~ 581 (787)
+..|+.++.-.|.-
T Consensus 457 ~a~cilyy~~~dif 470 (695)
T KOG0353|consen 457 KADCILYYGFADIF 470 (695)
T ss_pred cccEEEEechHHHH
Confidence 79999887655543
No 90
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.96 E-value=3.5e-28 Score=274.24 Aligned_cols=294 Identities=20% Similarity=0.275 Sum_probs=203.6
Q ss_pred CCCcHHHHHHHHHHHc----CCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003910 246 EKPTSIQCQALPIILS----GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (787)
Q Consensus 246 ~~ptp~Q~~ai~~il~----grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~ 321 (787)
.+|+++|.+++..+.. .+..++++|||+|||++++..+ ..+ +..+||||||++|+.||++.+.++
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~-~~~----------~~~~Lvlv~~~~L~~Qw~~~~~~~ 103 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAI-AEL----------KRSTLVLVPTKELLDQWAEALKKF 103 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHH-HHh----------cCCEEEEECcHHHHHHHHHHHHHh
Confidence 5799999999999998 8999999999999999755443 333 222999999999999998777777
Q ss_pred hhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHhhhcC
Q 003910 322 AKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIR 401 (787)
Q Consensus 322 ~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~~ 401 (787)
.... ..+..++|...... . ..|+|+|++.+........+....+.+|||||||++....+. .+...+.
T Consensus 104 ~~~~--~~~g~~~~~~~~~~-----~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~----~~~~~~~ 171 (442)
T COG1061 104 LLLN--DEIGIYGGGEKELE-----P-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYR----RILELLS 171 (442)
T ss_pred cCCc--cccceecCceeccC-----C-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHH----HHHHhhh
Confidence 5421 13334444333211 0 369999999998752112333447999999999997754333 3333333
Q ss_pred CCceEEEEeccCcHHHHHHH---HHHhCCCeEEEeccccccc----ccceEEEEec--C---------------------
Q 003910 402 PDRQTLLFSATMPRKVEKLA---REILSDPVRVTVGEVGMAN----EDITQVVHVI--P--------------------- 451 (787)
Q Consensus 402 ~~~q~ll~SAT~~~~v~~l~---~~~l~~p~~i~v~~~~~~~----~~i~q~~~~~--~--------------------- 451 (787)
....+|+||||+++.-.... ..++. |....+....... .........+ .
T Consensus 172 ~~~~~LGLTATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~ 250 (442)
T COG1061 172 AAYPRLGLTATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRAR 250 (442)
T ss_pred cccceeeeccCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhh
Confidence 22228999999874431111 11111 2222221111000 0000000000 0
Q ss_pred --------------CCcchHHHHHHhcCCcCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhh
Q 003910 452 --------------SDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFK 517 (787)
Q Consensus 452 --------------~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~ 517 (787)
....+...+..++.......++||||..+.++..++..|...++ +..+.+..+..+|..+++.|+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr 329 (442)
T COG1061 251 GTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFR 329 (442)
T ss_pred hhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHH
Confidence 01112222222332222355999999999999999999998888 999999999999999999999
Q ss_pred cCCccEEEEehhhhccCCCCCccEEEEecCCCCHHHHHHHhhccCCC
Q 003910 518 SGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRA 564 (787)
Q Consensus 518 ~G~~~VLVaT~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~ 564 (787)
.|.+++||++.++.+|+|+|+++++|...+..+...|+||+||..|.
T Consensus 330 ~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 330 TGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred cCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccC
Confidence 99999999999999999999999999999999999999999999993
No 91
>PRK09694 helicase Cas3; Provisional
Probab=99.96 E-value=7e-27 Score=277.96 Aligned_cols=312 Identities=18% Similarity=0.193 Sum_probs=203.0
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhh
Q 003910 245 YEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS 324 (787)
Q Consensus 245 ~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~ 324 (787)
...|+|+|..+........-+|+.||||+|||.++++.+.. ++.. .....++|++||+++++|+++.+.+++..
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~-l~~~-----~~~~gi~~aLPT~Atan~m~~Rl~~~~~~ 357 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWR-LIDQ-----GLADSIIFALPTQATANAMLSRLEALASK 357 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHH-HHHh-----CCCCeEEEECcHHHHHHHHHHHHHHHHHH
Confidence 35899999988655444567899999999999997766543 3322 22457899999999999999999886653
Q ss_pred c--CceEEEEECCCChHHHH--------------------HHHhc-------CCcEEEeCHHHHHHHHHh-ccccccc--
Q 003910 325 H--GIRVSAVYGGMSKLDQF--------------------KELKA-------GCEIVIATPGRLIDMLKM-KALTMSR-- 372 (787)
Q Consensus 325 ~--~i~v~~~~gg~~~~~~~--------------------~~l~~-------~~dIIV~Tp~~L~~~l~~-~~~~l~~-- 372 (787)
. ...+.+++|.......+ ..+.. -.+|+|||...++..+.. +...+..
T Consensus 358 ~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~ 437 (878)
T PRK09694 358 LFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFG 437 (878)
T ss_pred hcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHh
Confidence 2 34566676654321111 01111 169999999988854432 2222222
Q ss_pred --eeEEEEechhhhhcCCChHHHHHHhhhc-CCCceEEEEeccCcHHHHHHHHHHhCC--C--------eEEEecccc--
Q 003910 373 --VTYLVLDEADRMFDLGFEPQIRSIVGQI-RPDRQTLLFSATMPRKVEKLAREILSD--P--------VRVTVGEVG-- 437 (787)
Q Consensus 373 --i~~lViDEah~m~~~~f~~~i~~il~~~-~~~~q~ll~SAT~~~~v~~l~~~~l~~--p--------~~i~v~~~~-- 437 (787)
-++|||||+|.+- .-....+..++..+ .....+|+||||+|..+.+.+...+.. + .........
T Consensus 438 La~svvIiDEVHAyD-~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~ 516 (878)
T PRK09694 438 LGRSVLIVDEVHAYD-AYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQ 516 (878)
T ss_pred hccCeEEEechhhCC-HHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccce
Confidence 2589999999752 21223344444433 235679999999998876543332221 1 000000000
Q ss_pred ---cccc----cceEEEE--ecC-CCcchHHHHHHhcCC-cCCCCCEEEEecccccHHHHHHHHHHcC---CceeeccCC
Q 003910 438 ---MANE----DITQVVH--VIP-SDAEKLPWLLEKLPG-MIDDGDVLVFASKKTTVDEIESQLAQKG---FKAAALHGD 503 (787)
Q Consensus 438 ---~~~~----~i~q~~~--~~~-~~~~k~~~L~~~L~~-~~~~~kvLVF~~s~~~a~~l~~~L~~~g---~~v~~lhg~ 503 (787)
.... .....+. ... ........+++.+.+ ....+++|||||++..|..+++.|++.. +.+.++|+.
T Consensus 517 ~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsr 596 (878)
T PRK09694 517 RFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHAR 596 (878)
T ss_pred eeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCC
Confidence 0000 0111111 110 000111222332222 2245689999999999999999999765 679999999
Q ss_pred CCHHHH----HHHHHHh-hcCC---ccEEEEehhhhccCCCCCccEEEEecCCCCHHHHHHHhhccCCCCC
Q 003910 504 KDQASR----MEILQKF-KSGV---YHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGD 566 (787)
Q Consensus 504 ~~~~eR----~~~l~~F-~~G~---~~VLVaT~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G~ 566 (787)
+.+.+| .++++.| ++|+ ..|||||+++++|||| ++++||....| ++.++||+||++|.+.
T Consensus 597 f~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 597 FTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 999999 4678888 6666 4799999999999999 58999998888 7899999999999884
No 92
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=1.4e-27 Score=277.28 Aligned_cols=180 Identities=18% Similarity=0.281 Sum_probs=144.8
Q ss_pred ccccCCCHHHHHHHHHHcCcee-ccCCCCCccCCccccCCCHHHHHHHH-----HCCCCCC---cHHHHHHHHHHHcCCC
Q 003910 194 ASISGMSEQDVMEYKKSLAIRV-SGFDVPRPVKTFEDCGFSTQLMHAIS-----KQGYEKP---TSIQCQALPIILSGRD 264 (787)
Q Consensus 194 ~~i~~~s~~~~~~~~~~~~i~v-~g~~~P~pi~sf~~~~l~~~l~~~l~-----~~g~~~p---tp~Q~~ai~~il~grd 264 (787)
+.+..|+.++.......+.-.+ .+..+-.. --+.+.+..++...+. ..||..| ||+|.|+++.++.+++
T Consensus 32 ~~~~~lsd~eL~~kt~~~k~~l~~~~~ld~~--l~eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~g 109 (970)
T PRK12899 32 EKFSSLSDDELRNKTAELKQRYQDGESLDKL--LPEAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKG 109 (970)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHcCCchHHH--HHHHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCC
Confidence 4577888877765444443222 22211111 1345678888888776 6789988 9999999999999999
Q ss_pred EEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHH
Q 003910 265 IIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE 344 (787)
Q Consensus 265 vii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~ 344 (787)
+|+.++||+|||++|++|++..++.. ..++||+||++||.|+++.+..+...+++++.+++||.+...+...
T Consensus 110 vIAeaqTGeGKTLAf~LP~l~~aL~g--------~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~ 181 (970)
T PRK12899 110 FITEMQTGEGKTLTAVMPLYLNALTG--------KPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEI 181 (970)
T ss_pred eEEEeCCCCChHHHHHHHHHHHHhhc--------CCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHH
Confidence 99999999999999999999887542 2388999999999999999999999999999999999998887655
Q ss_pred HhcCCcEEEeCHHHH-HHHHHhcccccc-------ceeEEEEechhhhh
Q 003910 345 LKAGCEIVIATPGRL-IDMLKMKALTMS-------RVTYLVLDEADRMF 385 (787)
Q Consensus 345 l~~~~dIIV~Tp~~L-~~~l~~~~~~l~-------~i~~lViDEah~m~ 385 (787)
+ ++||||+||++| +++++.+.+.++ .+.++||||||.|+
T Consensus 182 y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 182 Y--QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred c--CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhh
Confidence 4 599999999999 999987755555 45899999999885
No 93
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=1.5e-27 Score=277.82 Aligned_cols=316 Identities=20% Similarity=0.250 Sum_probs=224.8
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcC
Q 003910 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (787)
Q Consensus 247 ~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~ 326 (787)
.|+++|.-+--++ .+.-|+.++||+|||++|++|++..++. +..++||+||++||.|.++++..++..+|
T Consensus 82 ~~ydvQliGg~~L--h~G~Iaem~TGeGKTL~a~Lpa~~~al~--------G~~V~VvTpn~yLA~qd~e~m~~l~~~lG 151 (896)
T PRK13104 82 RHFDVQLIGGMVL--HEGNIAEMRTGEGKTLVATLPAYLNAIS--------GRGVHIVTVNDYLAKRDSQWMKPIYEFLG 151 (896)
T ss_pred CcchHHHhhhhhh--ccCccccccCCCCchHHHHHHHHHHHhc--------CCCEEEEcCCHHHHHHHHHHHHHHhcccC
Confidence 4566666554444 4456899999999999999999987643 34589999999999999999999999999
Q ss_pred ceEEEEECCCChHHHHHHHhcCCcEEEeCHHHH-HHHHHhc-cccc-----cceeEEEEechhhhhc-CC----------
Q 003910 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRL-IDMLKMK-ALTM-----SRVTYLVLDEADRMFD-LG---------- 388 (787)
Q Consensus 327 i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L-~~~l~~~-~~~l-----~~i~~lViDEah~m~~-~~---------- 388 (787)
+++.+++||.+...+...+ .+||+++||++| ++++..+ .+.+ ..+.++||||||.|+- ..
T Consensus 152 Ltv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg~~ 229 (896)
T PRK13104 152 LTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISGAA 229 (896)
T ss_pred ceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeCCC
Confidence 9999999998876654433 589999999999 8888765 3334 5899999999998742 10
Q ss_pred -----ChHHHHHHhhhcCC--------------CceEEEEe---------------------------------------
Q 003910 389 -----FEPQIRSIVGQIRP--------------DRQTLLFS--------------------------------------- 410 (787)
Q Consensus 389 -----f~~~i~~il~~~~~--------------~~q~ll~S--------------------------------------- 410 (787)
....+..++..+.. ..+.+.+|
T Consensus 230 ~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~aL 309 (896)
T PRK13104 230 EDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAAL 309 (896)
T ss_pred ccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHHH
Confidence 11112222222211 11222222
Q ss_pred -----------------------------------------------------------------------------ccC
Q 003910 411 -----------------------------------------------------------------------------ATM 413 (787)
Q Consensus 411 -----------------------------------------------------------------------------AT~ 413 (787)
.|.
T Consensus 310 ~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa 389 (896)
T PRK13104 310 KAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGTA 389 (896)
T ss_pred HHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCCC
Confidence 222
Q ss_pred cHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcchHHHHHHhcCCcC-CCCCEEEEecccccHHHHHHHHHH
Q 003910 414 PRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQ 492 (787)
Q Consensus 414 ~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~ 492 (787)
.....+ +..+++-.+.+.....+....+.. -.+......|+..+++.+.+.. ...++||||+++..++.|+.+|.+
T Consensus 390 ~te~~E-f~~iY~l~Vv~IPtnkp~~R~d~~--d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~ 466 (896)
T PRK13104 390 DTEAYE-FQQIYNLEVVVIPTNRSMIRKDEA--DLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKK 466 (896)
T ss_pred hhHHHH-HHHHhCCCEEECCCCCCcceecCC--CeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHH
Confidence 111111 111111111111111111111111 1122234567777777765543 345999999999999999999999
Q ss_pred cCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCC----------------------------------
Q 003910 493 KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKS---------------------------------- 538 (787)
Q Consensus 493 ~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~---------------------------------- 538 (787)
.++++.+||+.+.+.++..+.+.|+.|. |+|||++|+||+||.=
T Consensus 467 ~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 544 (896)
T PRK13104 467 ENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEV 544 (896)
T ss_pred cCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHH
Confidence 9999999999999999999999999994 9999999999999972
Q ss_pred ----ccEEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEccccH
Q 003910 539 ----IKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (787)
Q Consensus 539 ----v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~ 580 (787)
-=|||--..+.|-.--.|-.||+||.| .+|.+.+|++-+|.
T Consensus 545 ~~~GGL~VIgTerhesrRID~QLrGRaGRQG-DPGss~f~lSleD~ 589 (896)
T PRK13104 545 IAAGGLRIIGSERHESRRIDNQLRGRAGRQG-DPGSSRFYLSLEDN 589 (896)
T ss_pred HHcCCCEEEeeccCchHHHHHHhccccccCC-CCCceEEEEEcCcH
Confidence 237888888888888899999999999 68999999988775
No 94
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.95 E-value=1.3e-26 Score=264.61 Aligned_cols=292 Identities=18% Similarity=0.236 Sum_probs=196.1
Q ss_pred EEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHH---H
Q 003910 266 IGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ---F 342 (787)
Q Consensus 266 ii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~---~ 342 (787)
|+.++||||||.+|+..+...+ . .+.++|||+|+++|+.|+++.+++.+ +..+..++++.+..+. +
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l-~-------~g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~~ 69 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVL-A-------LGKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQAW 69 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHH-H-------cCCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHHHH
Confidence 5789999999999876554443 2 25679999999999999999998764 5678888888766543 3
Q ss_pred HHHhc-CCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCC---ChHHHH--HHhhhcCCCceEEEEeccCcHH
Q 003910 343 KELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG---FEPQIR--SIVGQIRPDRQTLLFSATMPRK 416 (787)
Q Consensus 343 ~~l~~-~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~---f~~~i~--~il~~~~~~~q~ll~SAT~~~~ 416 (787)
..+.. ..+|||+|+..|. ..+.++.+|||||+|...-+. .....+ .++.....+.++|++|||+..+
T Consensus 70 ~~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsle 142 (505)
T TIGR00595 70 RKVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLE 142 (505)
T ss_pred HHHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHH
Confidence 34444 4799999998764 357789999999999765322 111111 2222334578899999997654
Q ss_pred HHHHHHHHhCCCeEEEecccccccccceEEEEecCCCc---chHHHHHHhcCCcCC-CCCEEEEeccccc----------
Q 003910 417 VEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDA---EKLPWLLEKLPGMID-DGDVLVFASKKTT---------- 482 (787)
Q Consensus 417 v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~---~k~~~L~~~L~~~~~-~~kvLVF~~s~~~---------- 482 (787)
....+ .-+....+...............+.-+.... .-...|++.+.+.+. +.++|||+|++..
T Consensus 143 s~~~~--~~g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg 220 (505)
T TIGR00595 143 SYHNA--KQKAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCG 220 (505)
T ss_pred HHHHH--hcCCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCc
Confidence 33222 1122222222111111111111111111111 111234444444443 4589999887543
Q ss_pred --------------------------------------------------HHHHHHHHHHc--CCceeeccCCCCHHHH-
Q 003910 483 --------------------------------------------------VDEIESQLAQK--GFKAAALHGDKDQASR- 509 (787)
Q Consensus 483 --------------------------------------------------a~~l~~~L~~~--g~~v~~lhg~~~~~eR- 509 (787)
.+.+++.|.+. +.++..+|+++.+..+
T Consensus 221 ~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~ 300 (505)
T TIGR00595 221 YILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGA 300 (505)
T ss_pred CccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccH
Confidence 37788888876 7789999999987765
Q ss_pred -HHHHHHhhcCCccEEEEehhhhccCCCCCccEEEEecCCC------------CHHHHHHHhhccCCCCCCCcEEEEEEc
Q 003910 510 -MEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIAR------------DMDMHVHRIGRTGRAGDKDGTAYTLVT 576 (787)
Q Consensus 510 -~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~~d~p~------------s~~~y~QriGR~gR~G~~~G~~i~l~~ 576 (787)
+.+++.|++|+.+|||+|+++++|+|+|+|++|+.+|... ....|+|++||+||.+ +.|.+++...
T Consensus 301 ~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~-~~g~viiqt~ 379 (505)
T TIGR00595 301 HEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAE-DPGQVIIQTY 379 (505)
T ss_pred HHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCC-CCCEEEEEeC
Confidence 8999999999999999999999999999999987554432 2467899999999988 6798886553
Q ss_pred cc
Q 003910 577 QK 578 (787)
Q Consensus 577 ~~ 578 (787)
..
T Consensus 380 ~p 381 (505)
T TIGR00595 380 NP 381 (505)
T ss_pred CC
Confidence 33
No 95
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=8.4e-27 Score=271.61 Aligned_cols=317 Identities=21% Similarity=0.234 Sum_probs=232.9
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhc
Q 003910 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (787)
Q Consensus 246 ~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~ 325 (787)
..|+++|.-+.-.+.+| -|..++||+|||+++.+|++...+. |..+-||+||..||.|.++++..++..+
T Consensus 80 ~~~~dvQlig~l~L~~G--~Iaem~TGeGKTLva~lpa~l~aL~--------G~~V~IvTpn~yLA~rd~e~~~~l~~~L 149 (830)
T PRK12904 80 MRHFDVQLIGGMVLHEG--KIAEMKTGEGKTLVATLPAYLNALT--------GKGVHVVTVNDYLAKRDAEWMGPLYEFL 149 (830)
T ss_pred CCCCccHHHhhHHhcCC--chhhhhcCCCcHHHHHHHHHHHHHc--------CCCEEEEecCHHHHHHHHHHHHHHHhhc
Confidence 35788888777666665 4999999999999999999644332 3347799999999999999999999999
Q ss_pred CceEEEEECCCChHHHHHHHhcCCcEEEeCHHHH-HHHHHhcc------ccccceeEEEEechhhhhc-CC---------
Q 003910 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRL-IDMLKMKA------LTMSRVTYLVLDEADRMFD-LG--------- 388 (787)
Q Consensus 326 ~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L-~~~l~~~~------~~l~~i~~lViDEah~m~~-~~--------- 388 (787)
|+++.+++|+.+..++...+ .++|+++||+.| .+++..+. ..+..+.++||||||.|+- ..
T Consensus 150 Glsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg~ 227 (830)
T PRK12904 150 GLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGP 227 (830)
T ss_pred CCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeECC
Confidence 99999999998887665543 499999999999 88886543 3467899999999998731 00
Q ss_pred ------ChHHHHHHhhhcCCC-----------------------------------------------------------
Q 003910 389 ------FEPQIRSIVGQIRPD----------------------------------------------------------- 403 (787)
Q Consensus 389 ------f~~~i~~il~~~~~~----------------------------------------------------------- 403 (787)
+...+..+...+..+
T Consensus 228 ~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~dY 307 (830)
T PRK12904 228 AEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDY 307 (830)
T ss_pred CCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCcE
Confidence 111111121111100
Q ss_pred ----------------------------------------------------------ceEEEEeccCcHHHHHHHHHHh
Q 003910 404 ----------------------------------------------------------RQTLLFSATMPRKVEKLAREIL 425 (787)
Q Consensus 404 ----------------------------------------------------------~q~ll~SAT~~~~v~~l~~~~l 425 (787)
.++.+||.|......++ ..++
T Consensus 308 iV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~-~~iY 386 (830)
T PRK12904 308 IVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEF-REIY 386 (830)
T ss_pred EEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHH-HHHh
Confidence 13445555554333332 2222
Q ss_pred CCCeEEEecccccccccceEEEEecCCCcchHHHHHHhcCCcC-CCCCEEEEecccccHHHHHHHHHHcCCceeeccCCC
Q 003910 426 SDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDK 504 (787)
Q Consensus 426 ~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~ 504 (787)
+-.+.......+....+... .+......|+..+...+.+.. ...++||||+++..++.|+..|.+.++++..||+.
T Consensus 387 ~l~vv~IPtnkp~~r~d~~d--~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak- 463 (830)
T PRK12904 387 NLDVVVIPTNRPMIRIDHPD--LIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK- 463 (830)
T ss_pred CCCEEEcCCCCCeeeeeCCC--eEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc-
Confidence 32222222111111111111 222345568888888775532 34599999999999999999999999999999995
Q ss_pred CHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCc--------------------------------------cEEEEec
Q 003910 505 DQASRMEILQKFKSGVYHVLIATDVAARGLDIKSI--------------------------------------KSVVNFD 546 (787)
Q Consensus 505 ~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v--------------------------------------~~VI~~d 546 (787)
+.+|+..+..|+.+...|+|||++|+||+||+-- =|||--.
T Consensus 464 -q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTe 542 (830)
T PRK12904 464 -NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTE 542 (830)
T ss_pred -hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecc
Confidence 8899999999999999999999999999998742 3788888
Q ss_pred CCCCHHHHHHHhhccCCCCCCCcEEEEEEccccH
Q 003910 547 IARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (787)
Q Consensus 547 ~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~ 580 (787)
.+.|..-..|-.||+||.| .+|.+..|++-+|.
T Consensus 543 rhesrRid~QlrGRagRQG-dpGss~f~lSleD~ 575 (830)
T PRK12904 543 RHESRRIDNQLRGRSGRQG-DPGSSRFYLSLEDD 575 (830)
T ss_pred cCchHHHHHHhhcccccCC-CCCceeEEEEcCcH
Confidence 8999999999999999999 68999999988765
No 96
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=9e-27 Score=268.88 Aligned_cols=345 Identities=20% Similarity=0.240 Sum_probs=247.9
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC-CCEEEEccCCCchhHHHHHHHHHHHhcCccccc---CCCCEEEEEcC
Q 003910 231 GFSTQLMHAISKQGYEKPTSIQCQALPIILSG-RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQK---EEGPIGVICAP 306 (787)
Q Consensus 231 ~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~g-rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~---~~~p~vLIl~P 306 (787)
.+|..-..++. |+..+.++|....+..+.+ .++++|||||+|||..+++.+|+.+-.+..... -..-++++++|
T Consensus 295 elP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAP 372 (1674)
T KOG0951|consen 295 ELPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAP 372 (1674)
T ss_pred CCcchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEee
Confidence 34444444443 5577999999999998877 589999999999999999999999866543211 12347899999
Q ss_pred cHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccc---cccceeEEEEechhh
Q 003910 307 TRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKAL---TMSRVTYLVLDEADR 383 (787)
Q Consensus 307 treLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~---~l~~i~~lViDEah~ 383 (787)
..+|++.|...+.+.+..+|++|.-.+|......+- ..+..||||||+..-- +.++.. ..+-+.++|+||.|.
T Consensus 373 mKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~q---ieeTqVIV~TPEK~Di-ITRk~gdraY~qlvrLlIIDEIHL 448 (1674)
T KOG0951|consen 373 MKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQ---IEETQVIVTTPEKWDI-ITRKSGDRAYEQLVRLLIIDEIHL 448 (1674)
T ss_pred HHHHHHHHHHHHHhhccccCcEEEEecccccchhhh---hhcceeEEeccchhhh-hhcccCchhHHHHHHHHhhhhhhh
Confidence 999999999999999999999999999986643321 2358999999999743 333321 234578899999996
Q ss_pred hhcCCChHHHHHHhhhc-------CCCceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCc--
Q 003910 384 MFDLGFEPQIRSIVGQI-------RPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDA-- 454 (787)
Q Consensus 384 m~~~~f~~~i~~il~~~-------~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~-- 454 (787)
+-+ ...+.+..|..++ ....+++++|||+|+- ++.+.-+..++.-+...........+.|.++-+....
T Consensus 449 LhD-dRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy-~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~ 526 (1674)
T KOG0951|consen 449 LHD-DRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNY-EDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPL 526 (1674)
T ss_pred ccc-ccchHHHHHHHHHHHHhhhcccCceeeeecccCCch-hhhHHHhccCcccccccCcccCcCCccceEeccccCCch
Confidence 644 3566666665443 2367899999999964 5555544444433333333444556667666554321
Q ss_pred chHH----HHHHhcCCcCCCCCEEEEecccccHHHHHHHHHHc-------------------------------------
Q 003910 455 EKLP----WLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK------------------------------------- 493 (787)
Q Consensus 455 ~k~~----~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~------------------------------------- 493 (787)
.++. ..++.+.+....++||||+.++++.-..|+.++..
T Consensus 527 ~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLL 606 (1674)
T KOG0951|consen 527 KRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLL 606 (1674)
T ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHh
Confidence 1211 22333333445589999999999887777776631
Q ss_pred CCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEE----EecCC------CCHHHHHHHhhccCC
Q 003910 494 GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVV----NFDIA------RDMDMHVHRIGRTGR 563 (787)
Q Consensus 494 g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI----~~d~p------~s~~~y~QriGR~gR 563 (787)
.+.++.+|.+|+..+|..+.+.|+.|.++|||+|..+++|+|+|.-+++| .||+- .++.+.+||+||+||
T Consensus 607 pygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragr 686 (1674)
T KOG0951|consen 607 PYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGR 686 (1674)
T ss_pred hccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCC
Confidence 46799999999999999999999999999999999999999999755555 36643 479999999999999
Q ss_pred CC-CCCcEEEEEEccccHHHH
Q 003910 564 AG-DKDGTAYTLVTQKEARFA 583 (787)
Q Consensus 564 ~G-~~~G~~i~l~~~~d~~~~ 583 (787)
.+ ...|..++.....+..+.
T Consensus 687 p~~D~~gegiiit~~se~qyy 707 (1674)
T KOG0951|consen 687 PQYDTCGEGIIITDHSELQYY 707 (1674)
T ss_pred CccCcCCceeeccCchHhhhh
Confidence 87 334555555444444433
No 97
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=1.9e-26 Score=267.66 Aligned_cols=317 Identities=21% Similarity=0.287 Sum_probs=226.1
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhc
Q 003910 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (787)
Q Consensus 246 ~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~ 325 (787)
..|++.|.-+.-++.+|+ |....||+|||+++.+|++..++. |..|-|++||.-||.|-++.+..++..+
T Consensus 79 ~~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~--------G~~v~vvT~neyLA~Rd~e~~~~~~~~L 148 (796)
T PRK12906 79 LRPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT--------GKGVHVVTVNEYLSSRDATEMGELYRWL 148 (796)
T ss_pred CCCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc--------CCCeEEEeccHHHHHhhHHHHHHHHHhc
Confidence 458888888877776665 999999999999999999887743 6668999999999999999999999999
Q ss_pred CceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHH-HHHHh------ccccccceeEEEEechhhhh-cCC---------
Q 003910 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLI-DMLKM------KALTMSRVTYLVLDEADRMF-DLG--------- 388 (787)
Q Consensus 326 ~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~-~~l~~------~~~~l~~i~~lViDEah~m~-~~~--------- 388 (787)
|++|.++.++.+..+.... -.|||+.+|..-|- ++|.. .......+.+.||||+|.|+ |..
T Consensus 149 Gl~vg~i~~~~~~~~r~~~--y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~ 226 (796)
T PRK12906 149 GLTVGLNLNSMSPDEKRAA--YNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQ 226 (796)
T ss_pred CCeEEEeCCCCCHHHHHHH--hcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCCC
Confidence 9999999987665544222 25899999988763 23322 12234568899999999763 100
Q ss_pred ------ChHHHHHHhhhcCCC-----------------------------------------------------------
Q 003910 389 ------FEPQIRSIVGQIRPD----------------------------------------------------------- 403 (787)
Q Consensus 389 ------f~~~i~~il~~~~~~----------------------------------------------------------- 403 (787)
+...+..++..+...
T Consensus 227 ~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~ 306 (796)
T PRK12906 227 AEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALR 306 (796)
T ss_pred CCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHH
Confidence 011111111111100
Q ss_pred ---------------------------------------------------------------------ceEEEEeccCc
Q 003910 404 ---------------------------------------------------------------------RQTLLFSATMP 414 (787)
Q Consensus 404 ---------------------------------------------------------------------~q~ll~SAT~~ 414 (787)
.++.+||.|..
T Consensus 307 A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~ 386 (796)
T PRK12906 307 ANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAK 386 (796)
T ss_pred HHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCH
Confidence 12333444433
Q ss_pred HHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcchHHHHHHhcCCcC-CCCCEEEEecccccHHHHHHHHHHc
Q 003910 415 RKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQK 493 (787)
Q Consensus 415 ~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~~ 493 (787)
....++ ...++-++.......+....+.. -.+......|+..+++.+.... ...++||||+++..++.|+..|.+.
T Consensus 387 ~e~~Ef-~~iY~l~vv~IPtnkp~~r~d~~--d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~ 463 (796)
T PRK12906 387 TEEEEF-REIYNMEVITIPTNRPVIRKDSP--DLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEA 463 (796)
T ss_pred HHHHHH-HHHhCCCEEEcCCCCCeeeeeCC--CeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHC
Confidence 222222 22222222221111111111111 1122234567778877775432 4569999999999999999999999
Q ss_pred CCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCC---Ccc-----EEEEecCCCCHHHHHHHhhccCCCC
Q 003910 494 GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIK---SIK-----SVVNFDIARDMDMHVHRIGRTGRAG 565 (787)
Q Consensus 494 g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip---~v~-----~VI~~d~p~s~~~y~QriGR~gR~G 565 (787)
++++.+||+.+.+.++..+...++.|. |+|||++++||+||+ +|. |||+++.|.+...|.|++|||||.|
T Consensus 464 gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG 541 (796)
T PRK12906 464 GIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQG 541 (796)
T ss_pred CCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCC
Confidence 999999999999888888888887776 999999999999995 889 9999999999999999999999999
Q ss_pred CCCcEEEEEEccccH
Q 003910 566 DKDGTAYTLVTQKEA 580 (787)
Q Consensus 566 ~~~G~~i~l~~~~d~ 580 (787)
.+|.+.+|++.+|.
T Consensus 542 -~~G~s~~~~sleD~ 555 (796)
T PRK12906 542 -DPGSSRFYLSLEDD 555 (796)
T ss_pred -CCcceEEEEeccch
Confidence 68999999998865
No 98
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=5.1e-26 Score=257.31 Aligned_cols=310 Identities=20% Similarity=0.209 Sum_probs=233.5
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcC
Q 003910 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (787)
Q Consensus 247 ~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~ 326 (787)
.|-++|++||-++..|..+++.|+|.+|||+++-.++...- .++.++++..|-++|.+|-++.|+..+...|
T Consensus 297 elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq--------~h~TR~iYTSPIKALSNQKfRDFk~tF~Dvg 368 (1248)
T KOG0947|consen 297 ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQ--------KHMTRTIYTSPIKALSNQKFRDFKETFGDVG 368 (1248)
T ss_pred CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHH--------hhccceEecchhhhhccchHHHHHHhccccc
Confidence 58899999999999999999999999999998766554332 3567799999999999999999888765433
Q ss_pred ceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHhhhcCCCceE
Q 003910 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQT 406 (787)
Q Consensus 327 i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ 406 (787)
+++|...... .+.++|+|.+.|..++-+..-.++++.+||+||+|.+-|......+..++-.+|+..++
T Consensus 369 ----LlTGDvqinP-------eAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~~ 437 (1248)
T KOG0947|consen 369 ----LLTGDVQINP-------EASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHVNF 437 (1248)
T ss_pred ----eeecceeeCC-------CcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccccceE
Confidence 6777654433 47899999999999999888778999999999999999988888888999999999999
Q ss_pred EEEeccCcHHHHHHHHHHhCC-CeEEEecccccccccceEEEEecC----------------------------------
Q 003910 407 LLFSATMPRKVEKLAREILSD-PVRVTVGEVGMANEDITQVVHVIP---------------------------------- 451 (787)
Q Consensus 407 ll~SAT~~~~v~~l~~~~l~~-p~~i~v~~~~~~~~~i~q~~~~~~---------------------------------- 451 (787)
|++|||.|+.. +++.|+-.- -..|++.........+.+.+..-.
T Consensus 438 IlLSATVPN~~-EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~ 516 (1248)
T KOG0947|consen 438 ILLSATVPNTL-EFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVE 516 (1248)
T ss_pred EEEeccCCChH-HHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccccccc
Confidence 99999999874 567766432 111222111111111111110000
Q ss_pred --------------------C----------Ccc---hHHHHHHhcCCcCCCCCEEEEecccccHHHHHHHHHHcC----
Q 003910 452 --------------------S----------DAE---KLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKG---- 494 (787)
Q Consensus 452 --------------------~----------~~~---k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g---- 494 (787)
. ... .+..|+..|.+. .--++||||-++..|+..+++|....
T Consensus 517 ~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~-~lLP~VvFvFSkkrCde~a~~L~~~nL~~~ 595 (1248)
T KOG0947|consen 517 KSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKK-NLLPVVVFVFSKKRCDEYADYLTNLNLTDS 595 (1248)
T ss_pred cccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhc-ccCceEEEEEccccHHHHHHHHhccCcccc
Confidence 0 000 122233333321 22379999999999999999997531
Q ss_pred -----------------------------------CceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCc
Q 003910 495 -----------------------------------FKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSI 539 (787)
Q Consensus 495 -----------------------------------~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v 539 (787)
-.++++||++-+--++-+.-.|..|-++||+||..+++|+|.|.-
T Consensus 596 ~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPAR 675 (1248)
T KOG0947|consen 596 KEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPAR 675 (1248)
T ss_pred hhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCce
Confidence 127889999999999999999999999999999999999999964
Q ss_pred cEEEEecCC---------CCHHHHHHHhhccCCCC-CCCcEEEEEEccc
Q 003910 540 KSVVNFDIA---------RDMDMHVHRIGRTGRAG-DKDGTAYTLVTQK 578 (787)
Q Consensus 540 ~~VI~~d~p---------~s~~~y~QriGR~gR~G-~~~G~~i~l~~~~ 578 (787)
+||+-.+- -.|-+|+|+.||+||.| ..+|+++++....
T Consensus 676 -tvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 676 -TVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred -eEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 45543332 26889999999999999 7778888877554
No 99
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.94 E-value=1.3e-25 Score=259.18 Aligned_cols=324 Identities=21% Similarity=0.292 Sum_probs=225.3
Q ss_pred CCcHHHHHHHHHHH---cC-CCEEEEccCCCchhHHHHHHHHHHHhcCc-ccccCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003910 247 KPTSIQCQALPIIL---SG-RDIIGIAKTGSGKTAAFVLPMIVHIMDQP-ELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (787)
Q Consensus 247 ~ptp~Q~~ai~~il---~g-rdvii~a~TGsGKTla~llp~l~~l~~~~-~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~ 321 (787)
+++.||++++.|+. .+ -+.|+|..||.|||++.+-.+....++.+ .....+..-.|||||. .|+-.|..++.+|
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 56889999999975 33 48999999999999996655544444431 1111122337999997 7999999999999
Q ss_pred hhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHhhhcC
Q 003910 322 AKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIR 401 (787)
Q Consensus 322 ~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~~ 401 (787)
++. ++|..++|+...+...+.-.+.++|||++|+.+..-+. .+.-..|.|+|+||-|-|.+. ...+.+.+..++
T Consensus 1054 ~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d--~l~~~~wNYcVLDEGHVikN~--ktkl~kavkqL~ 1127 (1549)
T KOG0392|consen 1054 FPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVD--YLIKIDWNYCVLDEGHVIKNS--KTKLTKAVKQLR 1127 (1549)
T ss_pred cch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHH--HHHhcccceEEecCcceecch--HHHHHHHHHHHh
Confidence 985 77777888766666666656678999999998875443 222346889999999988875 556667777776
Q ss_pred CCceEEEEecc-CcHHHHHHHHHH---h----------------------------------------------------
Q 003910 402 PDRQTLLFSAT-MPRKVEKLAREI---L---------------------------------------------------- 425 (787)
Q Consensus 402 ~~~q~ll~SAT-~~~~v~~l~~~~---l---------------------------------------------------- 425 (787)
...+ +++|.| +.+++.+|..-| |
T Consensus 1128 a~hR-LILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRR 1206 (1549)
T KOG0392|consen 1128 ANHR-LILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRR 1206 (1549)
T ss_pred hcce-EEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHH
Confidence 6655 455666 555555541111 0
Q ss_pred ------CC-CeEE-----------------------------Ee--cccccc--cccceEEE-----------EecC---
Q 003910 426 ------SD-PVRV-----------------------------TV--GEVGMA--NEDITQVV-----------HVIP--- 451 (787)
Q Consensus 426 ------~~-p~~i-----------------------------~v--~~~~~~--~~~i~q~~-----------~~~~--- 451 (787)
.+ |..| .+ +..... ...|.|.. .+..
T Consensus 1207 lKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~h 1286 (1549)
T KOG0392|consen 1207 LKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVH 1286 (1549)
T ss_pred HHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCc
Confidence 00 0000 00 000000 00000000 0000
Q ss_pred --------------------CCcchHHHHHHhcCCcC---------------CCCCEEEEecccccHHHHHHHHHHcC--
Q 003910 452 --------------------SDAEKLPWLLEKLPGMI---------------DDGDVLVFASKKTTVDEIESQLAQKG-- 494 (787)
Q Consensus 452 --------------------~~~~k~~~L~~~L~~~~---------------~~~kvLVF~~s~~~a~~l~~~L~~~g-- 494 (787)
....|+..|-++|..+. .+.++||||+-+.+++.+.+.|.+..
T Consensus 1287 p~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mp 1366 (1549)
T KOG0392|consen 1287 PDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMP 1366 (1549)
T ss_pred chHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcC
Confidence 12345555655554321 23589999999999999999997753
Q ss_pred -CceeeccCCCCHHHHHHHHHHhhcC-CccEEE-EehhhhccCCCCCccEEEEecCCCCHHHHHHHhhccCCCCCCCc-E
Q 003910 495 -FKAAALHGDKDQASRMEILQKFKSG-VYHVLI-ATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDG-T 570 (787)
Q Consensus 495 -~~v~~lhg~~~~~eR~~~l~~F~~G-~~~VLV-aT~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G-~ 570 (787)
+....|.|..++.+|.++.++|+++ .++||+ +|.|.+-|||+.++++||+++-.|||..-+|++.||+|+|++.- .
T Consensus 1367 sVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVN 1446 (1549)
T KOG0392|consen 1367 SVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVN 1446 (1549)
T ss_pred ceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeee
Confidence 3456899999999999999999998 677765 77999999999999999999999999999999999999996554 4
Q ss_pred EEEEEccc
Q 003910 571 AYTLVTQK 578 (787)
Q Consensus 571 ~i~l~~~~ 578 (787)
+|.|++..
T Consensus 1447 VyRlItrG 1454 (1549)
T KOG0392|consen 1447 VYRLITRG 1454 (1549)
T ss_pred eeeehhcc
Confidence 67788764
No 100
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.94 E-value=8.8e-26 Score=239.51 Aligned_cols=361 Identities=19% Similarity=0.259 Sum_probs=241.1
Q ss_pred cccCccccccccCCccccCCCHHHHHHHHHHcCceeccCCCCCccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHH
Q 003910 180 IDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPII 259 (787)
Q Consensus 180 ~~~~~f~k~fy~~~~~i~~~s~~~~~~~~~~~~i~v~g~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~i 259 (787)
+.|+...-..|..++++..+ |..+.+...+.+.....|..+. ..+-|+|.+.+.|+
T Consensus 141 ~p~er~~~rl~eh~pE~~~v----~~dlde~~p~i~e~aeqP~dli--------------------i~LL~fQkE~l~Wl 196 (791)
T KOG1002|consen 141 TPYERNTLRLYEHHPELRNV----FTDLDEANPVIAERAEQPDDLI--------------------IPLLPFQKEGLAWL 196 (791)
T ss_pred CccchhhhhhhhcCchhhhh----hhhhhhcCchhhhcccCcccce--------------------ecchhhhHHHHHHH
Confidence 33444444566777766544 6666666666555555555433 46789999999998
Q ss_pred HcC-----CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEEC
Q 003910 260 LSG-----RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYG 334 (787)
Q Consensus 260 l~g-----rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~g 334 (787)
... ...|+..+||.|||++.+..+|..+ .+...|||||+.+|. ||.+++.++.. |-.-+++|.
T Consensus 197 ~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~---------~ra~tLVvaP~VAlm-QW~nEI~~~T~--gslkv~~Yh 264 (791)
T KOG1002|consen 197 TSQEESSVAGGILADEMGMGKTIQTIALLLAEV---------DRAPTLVVAPTVALM-QWKNEIERHTS--GSLKVYIYH 264 (791)
T ss_pred HHhhhhhhccceehhhhccchHHHHHHHHHhcc---------ccCCeeEEccHHHHH-HHHHHHHHhcc--CceEEEEEe
Confidence 865 3589999999999999666555532 233389999998886 89999999987 555667778
Q ss_pred CCChHHHHHHHhcCCcEEEeCHHHHHHHHHhcccc-------------cc--ceeEEEEechhhhhcCCC----------
Q 003910 335 GMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALT-------------MS--RVTYLVLDEADRMFDLGF---------- 389 (787)
Q Consensus 335 g~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~-------------l~--~i~~lViDEah~m~~~~f---------- 389 (787)
|......++++. ++|+|++|+..+-....+.... |. .+.-||+||||.|.+..-
T Consensus 265 G~~R~~nikel~-~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~R~snTArAV~~L~ 343 (791)
T KOG1002|consen 265 GAKRDKNIKELM-NYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKDRQSNTARAVFALE 343 (791)
T ss_pred cccccCCHHHhh-cCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhcccccccccHHHHHHhhH
Confidence 888877777776 5999999999998877653221 33 355699999998855210
Q ss_pred ---------------hHHHHHHhhhcC--C-------------------------------CceEEEEeccCcHHHHHH-
Q 003910 390 ---------------EPQIRSIVGQIR--P-------------------------------DRQTLLFSATMPRKVEKL- 420 (787)
Q Consensus 390 ---------------~~~i~~il~~~~--~-------------------------------~~q~ll~SAT~~~~v~~l- 420 (787)
...+..+++.++ | ..++++|.+.++..++.+
T Consensus 344 tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~~~~~~ftdr~~c~~c~h~~m~h~~~~n~~mlk~IqkfG 423 (791)
T KOG1002|consen 344 TTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCASLDWKFTDRMHCDHCSHNIMQHTCFFNHFMLKPIQKFG 423 (791)
T ss_pred hhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhccccccceeecccccCCcccchhhhhhhhhcccccccchhhc
Confidence 111222222111 0 023444444433222111
Q ss_pred --------------------------------------------------------------------------------
Q 003910 421 -------------------------------------------------------------------------------- 420 (787)
Q Consensus 421 -------------------------------------------------------------------------------- 420 (787)
T Consensus 424 ~eGpGk~af~~~h~llk~ImlrrTkl~RAdDLgLPPRiv~vRrD~fn~eE~D~YeSLY~dSkrkfntyieeGvvlNNYAn 503 (791)
T KOG1002|consen 424 VEGPGKEAFNNIHTLLKNIMLRRTKLERADDLGLPPRIVTVRRDFFNEEEKDLYESLYKDSKRKFNTYIEEGVVLNNYAN 503 (791)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHhhcccccccCCCccceeeehhhhhhHHHHHHHHHHHhhHHhhhhHHhhhhhhhhHHH
Confidence
Q ss_pred -------HHHHhCCCeEEEecc-ccccccc------------------------------------------ceEEEEec
Q 003910 421 -------AREILSDPVRVTVGE-VGMANED------------------------------------------ITQVVHVI 450 (787)
Q Consensus 421 -------~~~~l~~p~~i~v~~-~~~~~~~------------------------------------------i~q~~~~~ 450 (787)
+++...+|..+.... ......+ +......+
T Consensus 504 IF~LitRmRQ~aDHP~LVl~S~~~n~~~enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i 583 (791)
T KOG1002|consen 504 IFTLITRMRQAADHPDLVLYSANANLPDENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHI 583 (791)
T ss_pred HHHHHHHHHHhccCcceeeehhhcCCCccccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccc
Confidence 122223344332210 0000000 00000000
Q ss_pred C--------------------------------CCcchHHHHHHhcCCcCCC---CCEEEEecccccHHHHHHHHHHcCC
Q 003910 451 P--------------------------------SDAEKLPWLLEKLPGMIDD---GDVLVFASKKTTVDEIESQLAQKGF 495 (787)
Q Consensus 451 ~--------------------------------~~~~k~~~L~~~L~~~~~~---~kvLVF~~s~~~a~~l~~~L~~~g~ 495 (787)
. ....|+..|.+.|..+... -+.|||.+....++.+...|.+.|+
T Consensus 584 ~LsiDlse~alek~~l~~Fk~sSIlnRinm~~~qsSTKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGf 663 (791)
T KOG1002|consen 584 GLSIDLSEPALEKTDLKGFKASSILNRINMDDWQSSTKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGF 663 (791)
T ss_pred cccccccchhhhhcchhhhhhHHHhhhcchhhhcchhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCc
Confidence 0 1234556666655443332 3789999999999999999999999
Q ss_pred ceeeccCCCCHHHHHHHHHHhhcC-Ccc-EEEEehhhhccCCCCCccEEEEecCCCCHHHHHHHhhccCCCCCCCcEEEE
Q 003910 496 KAAALHGDKDQASRMEILQKFKSG-VYH-VLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYT 573 (787)
Q Consensus 496 ~v~~lhg~~~~~eR~~~l~~F~~G-~~~-VLVaT~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~ 573 (787)
.|+.|.|+|++..|..+++.|++. .+. +||+-.+.+..||+..+.+|+++|++||+..-.|...|.+|+|+...+-++
T Consensus 664 scVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvv 743 (791)
T KOG1002|consen 664 SCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVV 743 (791)
T ss_pred eEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEE
Confidence 999999999999999999999985 344 567779999999999999999999999999999999999999976555444
Q ss_pred EEcc
Q 003910 574 LVTQ 577 (787)
Q Consensus 574 l~~~ 577 (787)
-++-
T Consensus 744 rf~i 747 (791)
T KOG1002|consen 744 RFCI 747 (791)
T ss_pred Eeeh
Confidence 4443
No 101
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.94 E-value=6.4e-26 Score=250.81 Aligned_cols=309 Identities=20% Similarity=0.240 Sum_probs=235.7
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcC
Q 003910 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (787)
Q Consensus 247 ~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~ 326 (787)
++-|+|.++|..+-++..+|+.|.|.+|||.++-.++...+ .++.+|++..|-++|.+|-++++..-++.
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sL--------r~kQRVIYTSPIKALSNQKYREl~~EF~D-- 198 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSL--------REKQRVIYTSPIKALSNQKYRELLEEFKD-- 198 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHH--------HhcCeEEeeChhhhhcchhHHHHHHHhcc--
Confidence 57899999999999999999999999999999887777766 33567999999999999999999887664
Q ss_pred ceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHhhhcCCCceE
Q 003910 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQT 406 (787)
Q Consensus 327 i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ 406 (787)
|.+.+|...... .+..+|+|.+.|..++-++.-.+..+.+||+||+|.|-|......+..-+-.++++.+.
T Consensus 199 --VGLMTGDVTInP-------~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~ 269 (1041)
T KOG0948|consen 199 --VGLMTGDVTINP-------DASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRF 269 (1041)
T ss_pred --cceeecceeeCC-------CCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccceE
Confidence 344566554433 37789999999999998887779999999999999999987776777777788999999
Q ss_pred EEEeccCcHHHHHHHHHHhC---CCeEEEecccccccccceEE---------EEecCCC----cchHHHHHHhcCCcC--
Q 003910 407 LLFSATMPRKVEKLAREILS---DPVRVTVGEVGMANEDITQV---------VHVIPSD----AEKLPWLLEKLPGMI-- 468 (787)
Q Consensus 407 ll~SAT~~~~v~~l~~~~l~---~p~~i~v~~~~~~~~~i~q~---------~~~~~~~----~~k~~~L~~~L~~~~-- 468 (787)
+++|||+|+. .+++.|++. .|..+...... +..+.+. +.+++.. .+.+...+..|....
T Consensus 270 VFLSATiPNA-~qFAeWI~~ihkQPcHVVYTdyR--PTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~ 346 (1041)
T KOG0948|consen 270 VFLSATIPNA-RQFAEWICHIHKQPCHVVYTDYR--PTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGES 346 (1041)
T ss_pred EEEeccCCCH-HHHHHHHHHHhcCCceEEeecCC--CCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCC
Confidence 9999999976 567888875 35444332221 1122221 1112110 111222222222110
Q ss_pred -----------------------------------CCCCEEEEecccccHHHHHHHHHHcC-------------------
Q 003910 469 -----------------------------------DDGDVLVFASKKTTVDEIESQLAQKG------------------- 494 (787)
Q Consensus 469 -----------------------------------~~~kvLVF~~s~~~a~~l~~~L~~~g------------------- 494 (787)
.-.+||||+-++++|+.++-.|.+..
T Consensus 347 ~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~ 426 (1041)
T KOG0948|consen 347 DGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAID 426 (1041)
T ss_pred ccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHH
Confidence 11379999999999999998887641
Q ss_pred --------------------CceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEEEecC-------
Q 003910 495 --------------------FKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDI------- 547 (787)
Q Consensus 495 --------------------~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~~d~------- 547 (787)
-.++++|+++-+--++-+.-.|..|-++||.||...+.|||.|.- +|++-..
T Consensus 427 ~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAk-TVvFT~~rKfDG~~ 505 (1041)
T KOG0948|consen 427 QLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAK-TVVFTAVRKFDGKK 505 (1041)
T ss_pred hcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcce-eEEEeeccccCCcc
Confidence 127889999999999999999999999999999999999999964 5554222
Q ss_pred --CCCHHHHHHHhhccCCCC-CCCcEEEEEEccc
Q 003910 548 --ARDMDMHVHRIGRTGRAG-DKDGTAYTLVTQK 578 (787)
Q Consensus 548 --p~s~~~y~QriGR~gR~G-~~~G~~i~l~~~~ 578 (787)
+-+--+|+|+.||+||.| ...|.||+++...
T Consensus 506 fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 506 FRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred eeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 226678999999999999 6679999998764
No 102
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.93 E-value=2.2e-24 Score=263.60 Aligned_cols=303 Identities=18% Similarity=0.265 Sum_probs=198.1
Q ss_pred CCCcHHHHHHHHHHH----c-CCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHH
Q 003910 246 EKPTSIQCQALPIIL----S-GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKK 320 (787)
Q Consensus 246 ~~ptp~Q~~ai~~il----~-grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~ 320 (787)
..|+++|.+||..+. . .+.+|++++||||||.++ +.++..++.. ...+++|||+|+++|+.|+.+.|..
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~ta-i~li~~L~~~-----~~~~rVLfLvDR~~L~~Qa~~~F~~ 485 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTA-IALMYRLLKA-----KRFRRILFLVDRSALGEQAEDAFKD 485 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHH-HHHHHHHHhc-----CccCeEEEEecHHHHHHHHHHHHHh
Confidence 358999999998876 2 368999999999999873 4445555443 2346799999999999999999988
Q ss_pred HhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhc-----cccccceeEEEEechhhhhc---------
Q 003910 321 FAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK-----ALTMSRVTYLVLDEADRMFD--------- 386 (787)
Q Consensus 321 ~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~-----~~~l~~i~~lViDEah~m~~--------- 386 (787)
+.......+..+++....... .......|+|+|++.|...+... ...+..+++|||||||+...
T Consensus 486 ~~~~~~~~~~~i~~i~~L~~~--~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~ 563 (1123)
T PRK11448 486 TKIEGDQTFASIYDIKGLEDK--FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGE 563 (1123)
T ss_pred cccccccchhhhhchhhhhhh--cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccch
Confidence 732212111112221100010 11234799999999998765321 23567889999999998531
Q ss_pred CC------ChHHHHHHhhhcCCCceEEEEeccCcHHHHHHHHHHhCCCe---------------------EEEec--ccc
Q 003910 387 LG------FEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPV---------------------RVTVG--EVG 437 (787)
Q Consensus 387 ~~------f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~---------------------~i~v~--~~~ 437 (787)
.. +...++.++..+ +...|+||||+..... .+++.|+ .+... ..+
T Consensus 564 ~~~~~~~~~~~~yr~iL~yF--dA~~IGLTATP~r~t~----~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~g 637 (1123)
T PRK11448 564 LQFRDQLDYVSKYRRVLDYF--DAVKIGLTATPALHTT----EIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEG 637 (1123)
T ss_pred hccchhhhHHHHHHHHHhhc--CccEEEEecCCccchh----HHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEecccc
Confidence 01 235667777765 3567999999864322 2222222 11110 000
Q ss_pred ccccc------ceE---EE--EecCCC-------cch-------H----HHHHHhcCCcCCCCCEEEEecccccHHHHHH
Q 003910 438 MANED------ITQ---VV--HVIPSD-------AEK-------L----PWLLEKLPGMIDDGDVLVFASKKTTVDEIES 488 (787)
Q Consensus 438 ~~~~~------i~q---~~--~~~~~~-------~~k-------~----~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~ 488 (787)
..... +.. .+ ..++.. ..+ . ..|.+.+... ..+++||||.++.+|+.+++
T Consensus 638 i~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~-~~~KtiIF~~s~~HA~~i~~ 716 (1123)
T PRK11448 638 IHFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPT-GEGKTLIFAATDAHADMVVR 716 (1123)
T ss_pred ccccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhcc-CCCcEEEEEcCHHHHHHHHH
Confidence 00000 000 00 000000 000 0 1122222221 24799999999999999998
Q ss_pred HHHHc------CC---ceeeccCCCCHHHHHHHHHHhhcCCc-cEEEEehhhhccCCCCCccEEEEecCCCCHHHHHHHh
Q 003910 489 QLAQK------GF---KAAALHGDKDQASRMEILQKFKSGVY-HVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRI 558 (787)
Q Consensus 489 ~L~~~------g~---~v~~lhg~~~~~eR~~~l~~F~~G~~-~VLVaT~v~~rGlDip~v~~VI~~d~p~s~~~y~Qri 558 (787)
.|.+. ++ .+..+||+++ ++..+++.|+++.. .|||+++++.+|+|+|.|.+||++.++.|...|+|++
T Consensus 717 ~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmI 794 (1123)
T PRK11448 717 LLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQML 794 (1123)
T ss_pred HHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHH
Confidence 88753 22 4567899886 46789999999887 5899999999999999999999999999999999999
Q ss_pred hccCCCC
Q 003910 559 GRTGRAG 565 (787)
Q Consensus 559 GR~gR~G 565 (787)
||+.|..
T Consensus 795 GRgtR~~ 801 (1123)
T PRK11448 795 GRATRLC 801 (1123)
T ss_pred hhhccCC
Confidence 9999975
No 103
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.93 E-value=1.3e-25 Score=250.48 Aligned_cols=322 Identities=20% Similarity=0.290 Sum_probs=231.0
Q ss_pred CCcHHHHHHHHHHH----cCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHh
Q 003910 247 KPTSIQCQALPIIL----SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (787)
Q Consensus 247 ~ptp~Q~~ai~~il----~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~ 322 (787)
++-+||.-+|+|+. ++-+.|+..+||.|||++ +++.|.+|+... ..||. |||||...|- .|.+++.+||
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~g----~~gpH-LVVvPsSTle-NWlrEf~kwC 471 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQIG----NPGPH-LVVVPSSTLE-NWLREFAKWC 471 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHcC----CCCCc-EEEecchhHH-HHHHHHHHhC
Confidence 37899999999976 456889999999999998 677788876653 35665 8899997775 6999999999
Q ss_pred hhcCceEEEEECCCChHHHHHHHhc----CCcEEEeCHHHHHHHH-HhccccccceeEEEEechhhhhcCCChHHHHHHh
Q 003910 323 KSHGIRVSAVYGGMSKLDQFKELKA----GCEIVIATPGRLIDML-KMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIV 397 (787)
Q Consensus 323 ~~~~i~v~~~~gg~~~~~~~~~l~~----~~dIIV~Tp~~L~~~l-~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il 397 (787)
+ .++|..+||....+..++.... .++|||+||.....-- .+..+.-.++.++|+||+|.+.++.-+ .+. .|
T Consensus 472 P--sl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~Se-Ry~-~L 547 (941)
T KOG0389|consen 472 P--SLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSE-RYK-HL 547 (941)
T ss_pred C--ceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccchH-HHH-Hh
Confidence 8 7899999998877766655432 5899999997664311 122334457899999999999887522 222 23
Q ss_pred hhcCCCceEEEEecc-CcHHHHHHHHHH---hCCCeEEEec---------c-----------------------------
Q 003910 398 GQIRPDRQTLLFSAT-MPRKVEKLAREI---LSDPVRVTVG---------E----------------------------- 435 (787)
Q Consensus 398 ~~~~~~~q~ll~SAT-~~~~v~~l~~~~---l~~p~~i~v~---------~----------------------------- 435 (787)
-.++ ..+.|++|.| +.+++.+|+.-+ +.+....... .
T Consensus 548 M~I~-An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILR 626 (941)
T KOG0389|consen 548 MSIN-ANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILR 626 (941)
T ss_pred cccc-ccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHH
Confidence 3344 3445666666 455555442111 0000000000 0
Q ss_pred -----cccccccceEEEEecC-----------------------------------------------------------
Q 003910 436 -----VGMANEDITQVVHVIP----------------------------------------------------------- 451 (787)
Q Consensus 436 -----~~~~~~~i~q~~~~~~----------------------------------------------------------- 451 (787)
+-...+.-.+++.+|.
T Consensus 627 R~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~ 706 (941)
T KOG0389|consen 627 RLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRK 706 (941)
T ss_pred HHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHH
Confidence 0000000000010000
Q ss_pred ---------------------------------------------------CCcchHHHHHHhcCCcCCC-CCEEEEecc
Q 003910 452 ---------------------------------------------------SDAEKLPWLLEKLPGMIDD-GDVLVFASK 479 (787)
Q Consensus 452 ---------------------------------------------------~~~~k~~~L~~~L~~~~~~-~kvLVF~~s 479 (787)
-...|+..|-.+|.+.... .+||||.+.
T Consensus 707 mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQF 786 (941)
T KOG0389|consen 707 MAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQF 786 (941)
T ss_pred HHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHH
Confidence 1234566666666665544 599999999
Q ss_pred cccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCC--ccEEEEehhhhccCCCCCccEEEEecCCCCHHHHHHH
Q 003910 480 KTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGV--YHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHR 557 (787)
Q Consensus 480 ~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~--~~VLVaT~v~~rGlDip~v~~VI~~d~p~s~~~y~Qr 557 (787)
..+++.|...|...++.+..|.|.+.-.+|+.+++.|...+ ..+|++|.+.+-|||+..+++||+||...||-+-.|+
T Consensus 787 TqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QA 866 (941)
T KOG0389|consen 787 TQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQA 866 (941)
T ss_pred HHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchh
Confidence 99999999999999999999999999999999999998754 5679999999999999999999999999999999999
Q ss_pred hhccCCCC-CCCcEEEEEEccccH
Q 003910 558 IGRTGRAG-DKDGTAYTLVTQKEA 580 (787)
Q Consensus 558 iGR~gR~G-~~~G~~i~l~~~~d~ 580 (787)
-.||+|.| .++.++|.||++.-.
T Consensus 867 EDRcHRvGQtkpVtV~rLItk~TI 890 (941)
T KOG0389|consen 867 EDRCHRVGQTKPVTVYRLITKSTI 890 (941)
T ss_pred HHHHHhhCCcceeEEEEEEecCcH
Confidence 99999999 455678888887643
No 104
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.93 E-value=1.7e-24 Score=246.96 Aligned_cols=124 Identities=22% Similarity=0.403 Sum_probs=105.6
Q ss_pred hHHHHHHhcCCcCC-CCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCC--ccEEEEehhhhc
Q 003910 456 KLPWLLEKLPGMID-DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGV--YHVLIATDVAAR 532 (787)
Q Consensus 456 k~~~L~~~L~~~~~-~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~--~~VLVaT~v~~r 532 (787)
|+..|.-+|.++.. ..++|||++...+++.|..+|..+|+.++.|.|....++|+..+++|+... +++|++|...+.
T Consensus 1261 KLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggv 1340 (1958)
T KOG0391|consen 1261 KLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGV 1340 (1958)
T ss_pred hHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCcc
Confidence 44444333433332 348999999999999999999999999999999999999999999998865 578899999999
Q ss_pred cCCCCCccEEEEecCCCCHHHHHHHhhccCCCCC-CCcEEEEEEcccc
Q 003910 533 GLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGD-KDGTAYTLVTQKE 579 (787)
Q Consensus 533 GlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G~-~~G~~i~l~~~~d 579 (787)
|||+.++++||+||..||+....|...||+|+|+ +.-+.|.||+..-
T Consensus 1341 GiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~T 1388 (1958)
T KOG0391|consen 1341 GINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERT 1388 (1958)
T ss_pred ccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccch
Confidence 9999999999999999999999999999999994 4456777887653
No 105
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=9.9e-25 Score=253.52 Aligned_cols=316 Identities=17% Similarity=0.230 Sum_probs=223.0
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcC
Q 003910 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (787)
Q Consensus 247 ~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~ 326 (787)
.|+++|.-+--.+ .+.-|..++||.|||++|++|++..++. +..|.||+|++.||.|..+++..++..+|
T Consensus 82 ~~ydVQliGgl~L--~~G~IaEm~TGEGKTL~a~lp~~l~al~--------g~~VhIvT~ndyLA~RD~e~m~~l~~~lG 151 (908)
T PRK13107 82 RHFDVQLLGGMVL--DSNRIAEMRTGEGKTLTATLPAYLNALT--------GKGVHVITVNDYLARRDAENNRPLFEFLG 151 (908)
T ss_pred CcCchHHhcchHh--cCCccccccCCCCchHHHHHHHHHHHhc--------CCCEEEEeCCHHHHHHHHHHHHHHHHhcC
Confidence 4666666554444 4556899999999999999999987743 44599999999999999999999999999
Q ss_pred ceEEEEECCCChHHHHHHHhcCCcEEEeCHHHH-HHHHHhc-ccc-----ccceeEEEEechhhhhcC-C----------
Q 003910 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRL-IDMLKMK-ALT-----MSRVTYLVLDEADRMFDL-G---------- 388 (787)
Q Consensus 327 i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L-~~~l~~~-~~~-----l~~i~~lViDEah~m~~~-~---------- 388 (787)
++|.+++++.+..... -.-.+||+++||+.| +++|..+ .+. ...+.++||||||.|+.. .
T Consensus 152 lsv~~i~~~~~~~~r~--~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg~~ 229 (908)
T PRK13107 152 LTVGINVAGLGQQEKK--AAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAA 229 (908)
T ss_pred CeEEEecCCCCHHHHH--hcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeecCCC
Confidence 9999999988764321 122699999999999 8888655 323 377899999999987531 0
Q ss_pred -----ChHHHHHHhhhcC-------------------CCceEEE------------------------------------
Q 003910 389 -----FEPQIRSIVGQIR-------------------PDRQTLL------------------------------------ 408 (787)
Q Consensus 389 -----f~~~i~~il~~~~-------------------~~~q~ll------------------------------------ 408 (787)
+...+..++..+. ...+.+.
T Consensus 230 ~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~~ 309 (908)
T PRK13107 230 EDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLHH 309 (908)
T ss_pred ccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHHHH
Confidence 0111111111111 0111222
Q ss_pred --------------------------------------------------------------------------------
Q 003910 409 -------------------------------------------------------------------------------- 408 (787)
Q Consensus 409 -------------------------------------------------------------------------------- 408 (787)
T Consensus 310 i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~G 389 (908)
T PRK13107 310 VNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLAG 389 (908)
T ss_pred HHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhhc
Confidence
Q ss_pred EeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcchHHHHHHhcCCcCC-CCCEEEEecccccHHHHH
Q 003910 409 FSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMID-DGDVLVFASKKTTVDEIE 487 (787)
Q Consensus 409 ~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~-~~kvLVF~~s~~~a~~l~ 487 (787)
||.|......+ +..+++-.+.+.....+....+... .+......|+..+++.+..... ..+|||||+++..++.|+
T Consensus 390 MTGTa~te~~E-f~~iY~l~Vv~IPTnkp~~R~d~~d--~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls 466 (908)
T PRK13107 390 MTGTADTEAFE-FQHIYGLDTVVVPTNRPMVRKDMAD--LVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLA 466 (908)
T ss_pred ccCCChHHHHH-HHHHhCCCEEECCCCCCccceeCCC--cEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHH
Confidence 22222111111 1111111111111111111111111 1222345677777777665443 448999999999999999
Q ss_pred HHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCC------------------------------
Q 003910 488 SQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIK------------------------------ 537 (787)
Q Consensus 488 ~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip------------------------------ 537 (787)
.+|...++++..||+.+.+.++..+...|+.|. |+|||++++||+||.
T Consensus 467 ~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (908)
T PRK13107 467 RLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIR 544 (908)
T ss_pred HHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhh
Confidence 999999999999999999999999999999998 999999999999997
Q ss_pred -------CccEEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEccccH
Q 003910 538 -------SIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (787)
Q Consensus 538 -------~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~ 580 (787)
+-=|||--..+.|-.--.|-.||+||.| .+|.+..|++-+|.
T Consensus 545 ~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQG-DPGss~f~lSlED~ 593 (908)
T PRK13107 545 HDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQG-DAGSSRFYLSMEDS 593 (908)
T ss_pred HHHHHHcCCCEEEecccCchHHHHhhhhcccccCC-CCCceeEEEEeCcH
Confidence 2247888888999988999999999999 68999999988775
No 106
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.92 E-value=1.6e-24 Score=247.52 Aligned_cols=343 Identities=22% Similarity=0.269 Sum_probs=247.8
Q ss_pred CCHHH-HHHHHHCCCCCCcHHHHHHH--HHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcH
Q 003910 232 FSTQL-MHAISKQGYEKPTSIQCQAL--PIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTR 308 (787)
Q Consensus 232 l~~~l-~~~l~~~g~~~ptp~Q~~ai--~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~Ptr 308 (787)
+++.+ .-..+..|..+++.||.+|+ |.++.++++|+.+||+.|||+++-+-|+..++.. +..++.+.|..
T Consensus 207 ~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~-------rr~~llilp~v 279 (1008)
T KOG0950|consen 207 LPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR-------RRNVLLILPYV 279 (1008)
T ss_pred CchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH-------hhceeEeccee
Confidence 44444 44556679999999999998 6688999999999999999999999999887654 34588999999
Q ss_pred HHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHh--ccccccceeEEEEechhhhhc
Q 003910 309 ELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM--KALTMSRVTYLVLDEADRMFD 386 (787)
Q Consensus 309 eLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~--~~~~l~~i~~lViDEah~m~~ 386 (787)
..++.-...+..+....|+.|-+++|..+..... ...+|.|||-++-..++.. ..-.+..+.+|||||.|.+.+
T Consensus 280 siv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~~----k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d 355 (1008)
T KOG0950|consen 280 SIVQEKISALSPFSIDLGFPVEEYAGRFPPEKRR----KRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGD 355 (1008)
T ss_pred ehhHHHHhhhhhhccccCCcchhhcccCCCCCcc----cceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeec
Confidence 9998888899999999999999988766554332 2368999999987776653 233467899999999999999
Q ss_pred CCChHHHHHHhhhc-----CCCceEEEEeccCcHHHHHHHHHHhCCCeEEE-ecccccccccce--EEEEec--------
Q 003910 387 LGFEPQIRSIVGQI-----RPDRQTLLFSATMPRKVEKLAREILSDPVRVT-VGEVGMANEDIT--QVVHVI-------- 450 (787)
Q Consensus 387 ~~f~~~i~~il~~~-----~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~-v~~~~~~~~~i~--q~~~~~-------- 450 (787)
.+....+..++..+ ....|+|+||||+|+. . ++..++..-+... ....+. .+.+. ..++..
T Consensus 356 ~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~-~-lL~~~L~A~~y~t~fRPv~L-~E~ik~G~~i~~~~r~~~lr~ 432 (1008)
T KOG0950|consen 356 KGRGAILELLLAKILYENLETSVQIIGMSATIPNN-S-LLQDWLDAFVYTTRFRPVPL-KEYIKPGSLIYESSRNKVLRE 432 (1008)
T ss_pred cccchHHHHHHHHHHHhccccceeEeeeecccCCh-H-HHHHHhhhhheecccCcccc-hhccCCCcccccchhhHHHHH
Confidence 88887777776654 2346899999999864 2 3333333211111 000000 00000 000000
Q ss_pred -C----CCcc--hHHHHHHhcCCcCCCC-CEEEEecccccHHHHHHHHHHc-----------------------------
Q 003910 451 -P----SDAE--KLPWLLEKLPGMIDDG-DVLVFASKKTTVDEIESQLAQK----------------------------- 493 (787)
Q Consensus 451 -~----~~~~--k~~~L~~~L~~~~~~~-kvLVF~~s~~~a~~l~~~L~~~----------------------------- 493 (787)
. .... -...++.+..+...++ .+||||+++..|+.++..+...
T Consensus 433 ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ 512 (1008)
T KOG0950|consen 433 IANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGI 512 (1008)
T ss_pred hhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcc
Confidence 0 0000 0012222222333344 5999999999999888665431
Q ss_pred ---------CCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEEEec----CCCCHHHHHHHhhc
Q 003910 494 ---------GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFD----IARDMDMHVHRIGR 560 (787)
Q Consensus 494 ---------g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~~d----~p~s~~~y~QriGR 560 (787)
.+.+..+|.+++..+|+.+...|++|.+.||+||+.++.|+++|..+++|-.- ...+...|.|++||
T Consensus 513 ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GR 592 (1008)
T KOG0950|consen 513 LDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGR 592 (1008)
T ss_pred cchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhh
Confidence 34588999999999999999999999999999999999999999877766432 23467899999999
Q ss_pred cCCCC-CCCcEEEEEEccccHHHHHHHHH
Q 003910 561 TGRAG-DKDGTAYTLVTQKEARFAGELVN 588 (787)
Q Consensus 561 ~gR~G-~~~G~~i~l~~~~d~~~~~~l~~ 588 (787)
|||+| ...|.+++++.+.+.+....++.
T Consensus 593 AGR~gidT~GdsiLI~k~~e~~~~~~lv~ 621 (1008)
T KOG0950|consen 593 AGRTGIDTLGDSILIIKSSEKKRVRELVN 621 (1008)
T ss_pred hhhcccccCcceEEEeeccchhHHHHHHh
Confidence 99998 56699999999998876665543
No 107
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.92 E-value=4.1e-24 Score=210.25 Aligned_cols=166 Identities=35% Similarity=0.576 Sum_probs=142.7
Q ss_pred cHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCce
Q 003910 249 TSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIR 328 (787)
Q Consensus 249 tp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~ 328 (787)
||+|.++++.+++++++++++|||+|||++|+++++..+... ....+||++|+++|+.|+.+.+.+++...+++
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~------~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~ 74 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG------KDARVLIIVPTRALAEQQFERLRKFFSNTNVR 74 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT------SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSS
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC------CCceEEEEeecccccccccccccccccccccc
Confidence 799999999999999999999999999999999999988653 13479999999999999999999999877889
Q ss_pred EEEEECCCChH-HHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHhhhcC--CCce
Q 003910 329 VSAVYGGMSKL-DQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIR--PDRQ 405 (787)
Q Consensus 329 v~~~~gg~~~~-~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~~--~~~q 405 (787)
+..++++.... .....+..+++|+|+||++|.+.+......+.++++|||||+|.+..+.+...+..++..+. ...|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~ 154 (169)
T PF00270_consen 75 VVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQ 154 (169)
T ss_dssp EEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSE
T ss_pred cccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCc
Confidence 99999988865 34444455799999999999999987655777899999999999999888888888887773 3589
Q ss_pred EEEEeccCcHHHHHH
Q 003910 406 TLLFSATMPRKVEKL 420 (787)
Q Consensus 406 ~ll~SAT~~~~v~~l 420 (787)
++++|||+++.++.+
T Consensus 155 ~i~~SAT~~~~~~~~ 169 (169)
T PF00270_consen 155 IILLSATLPSNVEKL 169 (169)
T ss_dssp EEEEESSSTHHHHHH
T ss_pred EEEEeeCCChhHhhC
Confidence 999999999777653
No 108
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.92 E-value=5.1e-24 Score=251.05 Aligned_cols=309 Identities=21% Similarity=0.248 Sum_probs=230.1
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcC
Q 003910 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (787)
Q Consensus 247 ~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~ 326 (787)
.|-++|++++.+|..+..+++||+||+|||++...++...+. ++.+++++.|.++|.+|.+.++...+....
T Consensus 119 ~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~--------~~qrviYTsPIKALsNQKyrdl~~~fgdv~ 190 (1041)
T COG4581 119 ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALR--------DGQRVIYTSPIKALSNQKYRDLLAKFGDVA 190 (1041)
T ss_pred CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHH--------cCCceEeccchhhhhhhHHHHHHHHhhhhh
Confidence 588999999999999999999999999999987777666552 355699999999999999999888765331
Q ss_pred ceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHhhhcCCCceE
Q 003910 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQT 406 (787)
Q Consensus 327 i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ 406 (787)
-.+.+++|..... .++.|+|+|-+.|..++.+....+..+.+||+||+|.|.+......+..++-.++...|+
T Consensus 191 ~~vGL~TGDv~IN-------~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~v~~ 263 (1041)
T COG4581 191 DMVGLMTGDVSIN-------PDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPDHVRF 263 (1041)
T ss_pred hhccceecceeeC-------CCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcCCCCcE
Confidence 2235566655443 348899999999999999888889999999999999999998888888999999999999
Q ss_pred EEEeccCcHHHHHHHHHHhC---CCeEEEecccccccccceEEEE-------ecCCCcc----h---H------------
Q 003910 407 LLFSATMPRKVEKLAREILS---DPVRVTVGEVGMANEDITQVVH-------VIPSDAE----K---L------------ 457 (787)
Q Consensus 407 ll~SAT~~~~v~~l~~~~l~---~p~~i~v~~~~~~~~~i~q~~~-------~~~~~~~----k---~------------ 457 (787)
++||||+|+. +++..|+.. .|..+..... ....+.+.+. .++.... . .
T Consensus 264 v~LSATv~N~-~EF~~Wi~~~~~~~~~vv~t~~--RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~ 340 (1041)
T COG4581 264 VFLSATVPNA-EEFAEWIQRVHSQPIHVVSTEH--RPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVR 340 (1041)
T ss_pred EEEeCCCCCH-HHHHHHHHhccCCCeEEEeecC--CCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhcc
Confidence 9999999976 567777652 2333322211 1111111111 1110000 0 0
Q ss_pred ---------------------------HHHHHhcCCcCCCCCEEEEecccccHHHHHHHHHHc-----------------
Q 003910 458 ---------------------------PWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK----------------- 493 (787)
Q Consensus 458 ---------------------------~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~----------------- 493 (787)
..++..|.. ..--++|+||-++..|+.++..|...
T Consensus 341 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~-~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~ 419 (1041)
T COG4581 341 ETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDK-DNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIID 419 (1041)
T ss_pred ccCccccccccccccccCCcccccccchHHHhhhhh-hcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHH
Confidence 001111110 01137999999999998888776521
Q ss_pred -----------CC-------------ceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEEEecC--
Q 003910 494 -----------GF-------------KAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDI-- 547 (787)
Q Consensus 494 -----------g~-------------~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~~d~-- 547 (787)
++ .++++|++|=+..+..+...|..|-++||+||.+++.|+|.|.- +||++..
T Consensus 420 ~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPar-tvv~~~l~K 498 (1041)
T COG4581 420 HAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPAR-TVVFTSLSK 498 (1041)
T ss_pred HHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCccc-ceeeeeeEE
Confidence 12 15688999999999999999999999999999999999999964 4554332
Q ss_pred -------CCCHHHHHHHhhccCCCC-CCCcEEEEEE
Q 003910 548 -------ARDMDMHVHRIGRTGRAG-DKDGTAYTLV 575 (787)
Q Consensus 548 -------p~s~~~y~QriGR~gR~G-~~~G~~i~l~ 575 (787)
+-++..|.|+.||+||.| ...|+++++-
T Consensus 499 ~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~ 534 (1041)
T COG4581 499 FDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIE 534 (1041)
T ss_pred ecCCceeecChhHHHHhhhhhccccccccceEEEec
Confidence 347999999999999999 5668888873
No 109
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.92 E-value=7.7e-24 Score=227.13 Aligned_cols=345 Identities=21% Similarity=0.282 Sum_probs=246.9
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCEEEEccC-CCch--hHHHHHHHHHHHhcCccccc-----------------------C
Q 003910 243 QGYEKPTSIQCQALPIILSGRDIIGIAKT-GSGK--TAAFVLPMIVHIMDQPELQK-----------------------E 296 (787)
Q Consensus 243 ~g~~~ptp~Q~~ai~~il~grdvii~a~T-GsGK--Tla~llp~l~~l~~~~~~~~-----------------------~ 296 (787)
..-..+|+.|.+.+..+.+++|++..-.| +.|+ +-.|++.+|+|+++.+.+.- -
T Consensus 212 K~s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~ 291 (698)
T KOG2340|consen 212 KKSEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGF 291 (698)
T ss_pred cccCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCC
Confidence 34467899999999999999999875333 3454 56799999999986432110 1
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHHHhhhcCc---------eEEEEECC--------CChHHHHHH---------------
Q 003910 297 EGPIGVICAPTRELAHQIYLETKKFAKSHGI---------RVSAVYGG--------MSKLDQFKE--------------- 344 (787)
Q Consensus 297 ~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i---------~v~~~~gg--------~~~~~~~~~--------------- 344 (787)
..|+||||||+|+-|..+++.+..++...+- +..--|+| ..+......
T Consensus 292 tRpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ 371 (698)
T KOG2340|consen 292 TRPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLA 371 (698)
T ss_pred CCceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHH
Confidence 2699999999999999999999888543211 11111222 111112222
Q ss_pred -------Hh---cCCcEEEeCHHHHHHHHHhc------cccccceeEEEEechhhhhcCCChHHHHHHhhhc---CC---
Q 003910 345 -------LK---AGCEIVIATPGRLIDMLKMK------ALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI---RP--- 402 (787)
Q Consensus 345 -------l~---~~~dIIV~Tp~~L~~~l~~~------~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~---~~--- 402 (787)
|. ..+|||||+|-.|..++... .-.|++|.++|||.||.|+..+|+ .+..|+.++ |.
T Consensus 372 ftkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwE-hl~~ifdHLn~~P~k~h 450 (698)
T KOG2340|consen 372 FTKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWE-HLLHIFDHLNLQPSKQH 450 (698)
T ss_pred HHHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHH-HHHHHHHHhhcCccccc
Confidence 21 24899999999999988732 223789999999999988876655 445555444 32
Q ss_pred ------------------CceEEEEeccCcHHHHHHHHHHhCCCe-EEEe------cccccccccceEEEEec------C
Q 003910 403 ------------------DRQTLLFSATMPRKVEKLAREILSDPV-RVTV------GEVGMANEDITQVVHVI------P 451 (787)
Q Consensus 403 ------------------~~q~ll~SAT~~~~v~~l~~~~l~~p~-~i~v------~~~~~~~~~i~q~~~~~------~ 451 (787)
-+|+|+||+...+.+..++..+|.+.. .+.. +........+.|.+..+ .
T Consensus 451 ~~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~ 530 (698)
T KOG2340|consen 451 DVDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIE 530 (698)
T ss_pred CCChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCccc
Confidence 169999999999999999999998742 1111 11112222233333221 2
Q ss_pred CCcchHHHHHHhcC-CcCC--CCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEeh
Q 003910 452 SDAEKLPWLLEKLP-GMID--DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD 528 (787)
Q Consensus 452 ~~~~k~~~L~~~L~-~~~~--~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~ 528 (787)
....++..++..+. .+.. ...+|||++++-+..+|.++|++..+.++.||.+.++..-.++.+.|-.|+..||+.|.
T Consensus 531 ~~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTE 610 (698)
T KOG2340|consen 531 TPDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTE 610 (698)
T ss_pred CchHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEeh
Confidence 23456666665443 3222 23789999999999999999999999999999999999999999999999999999999
Q ss_pred hhh--ccCCCCCccEEEEecCCCCHHHHH---HHhhccCCCCC---CCcEEEEEEccccHHHHHHHHH
Q 003910 529 VAA--RGLDIKSIKSVVNFDIARDMDMHV---HRIGRTGRAGD---KDGTAYTLVTQKEARFAGELVN 588 (787)
Q Consensus 529 v~~--rGlDip~v~~VI~~d~p~s~~~y~---QriGR~gR~G~---~~G~~i~l~~~~d~~~~~~l~~ 588 (787)
.++ |..+|.+|+.||+|.+|.+|..|. .+++|+.-.|+ ..-+|.+|+++.|.-.+..++-
T Consensus 611 R~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~ivG 678 (698)
T KOG2340|consen 611 RAHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIVG 678 (698)
T ss_pred hhhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhhh
Confidence 988 889999999999999999999885 45566654442 1257888999998877766653
No 110
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.91 E-value=2e-22 Score=206.83 Aligned_cols=306 Identities=21% Similarity=0.244 Sum_probs=213.1
Q ss_pred CCCcHHHHHHHHHHH----cCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003910 246 EKPTSIQCQALPIIL----SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (787)
Q Consensus 246 ~~ptp~Q~~ai~~il----~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~ 321 (787)
.+++|.|..+-..++ +.+++|++|-||+|||-. +.+.+..++++ |..+.|..|....|..++..++..
T Consensus 96 G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~~-------G~~vciASPRvDVclEl~~Rlk~a 167 (441)
T COG4098 96 GTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALNQ-------GGRVCIASPRVDVCLELYPRLKQA 167 (441)
T ss_pred cccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHhc-------CCeEEEecCcccchHHHHHHHHHh
Confidence 479999998877665 558999999999999985 66667776554 777999999999999999999888
Q ss_pred hhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHh-hhc
Q 003910 322 AKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIV-GQI 400 (787)
Q Consensus 322 ~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il-~~~ 400 (787)
+. +..+.++||+....-. ..+||||...|+.+.+ .+++|||||+|..--.. ...+...+ ...
T Consensus 168 F~--~~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk~-------aFD~liIDEVDAFP~~~-d~~L~~Av~~ar 230 (441)
T COG4098 168 FS--NCDIDLLYGDSDSYFR-------APLVVATTHQLLRFKQ-------AFDLLIIDEVDAFPFSD-DQSLQYAVKKAR 230 (441)
T ss_pred hc--cCCeeeEecCCchhcc-------ccEEEEehHHHHHHHh-------hccEEEEeccccccccC-CHHHHHHHHHhh
Confidence 76 5778889998765432 7899999988887653 46789999999753221 22333333 333
Q ss_pred CCCceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcchH-----H-HHHHhcCCcCC-CCCE
Q 003910 401 RPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKL-----P-WLLEKLPGMID-DGDV 473 (787)
Q Consensus 401 ~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~-----~-~L~~~L~~~~~-~~kv 473 (787)
+..--+|++|||+++.++.-+..- +...+.+.......+-+.-.+.++.....++ . .|...|..... ..++
T Consensus 231 k~~g~~IylTATp~k~l~r~~~~g--~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~ 308 (441)
T COG4098 231 KKEGATIYLTATPTKKLERKILKG--NLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPV 308 (441)
T ss_pred cccCceEEEecCChHHHHHHhhhC--CeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcE
Confidence 456678999999998765443322 2222333222222222223333333222222 1 34444443333 4589
Q ss_pred EEEecccccHHHHHHHHHHc-C-CceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEEEecCC--C
Q 003910 474 LVFASKKTTVDEIESQLAQK-G-FKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIA--R 549 (787)
Q Consensus 474 LVF~~s~~~a~~l~~~L~~~-g-~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~~d~p--~ 549 (787)
|||+++....+.++..|+.. . ..++.+|+.. ..|.+.+..|++|++++||+|.+++||+.+|+|+++|.-.-- .
T Consensus 309 liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vf 386 (441)
T COG4098 309 LIFFPEIETMEQVAAALKKKLPKETIASVHSED--QHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVF 386 (441)
T ss_pred EEEecchHHHHHHHHHHHhhCCccceeeeeccC--ccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccc
Confidence 99999999999999999553 3 3446777654 468889999999999999999999999999999988764333 4
Q ss_pred CHHHHHHHhhccCCCCC-CCcEEEEEEccccH
Q 003910 550 DMDMHVHRIGRTGRAGD-KDGTAYTLVTQKEA 580 (787)
Q Consensus 550 s~~~y~QriGR~gR~G~-~~G~~i~l~~~~d~ 580 (787)
+-+..+|..||+||.-. ..|.++.|-.-...
T Consensus 387 TesaLVQIaGRvGRs~~~PtGdv~FFH~G~sk 418 (441)
T COG4098 387 TESALVQIAGRVGRSLERPTGDVLFFHYGKSK 418 (441)
T ss_pred cHHHHHHHhhhccCCCcCCCCcEEEEeccchH
Confidence 67888999999999763 34555544433333
No 111
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.91 E-value=4.4e-23 Score=242.02 Aligned_cols=309 Identities=19% Similarity=0.293 Sum_probs=213.2
Q ss_pred HHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEE
Q 003910 251 IQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVS 330 (787)
Q Consensus 251 ~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~ 330 (787)
...+.+..+.+.+-+||+++||||||.+ +|.+. +.... ..+..+.++-|.|.-|..+++.+...+ +.++.
T Consensus 54 ~~~~i~~ai~~~~vvii~getGsGKTTq--lP~~l--le~g~---~~~g~I~~tQPRRlAArsvA~RvAeel---~~~~G 123 (845)
T COG1643 54 VRDEILKAIEQNQVVIIVGETGSGKTTQ--LPQFL--LEEGL---GIAGKIGCTQPRRLAARSVAERVAEEL---GEKLG 123 (845)
T ss_pred HHHHHHHHHHhCCEEEEeCCCCCChHHH--HHHHH--Hhhhc---ccCCeEEecCchHHHHHHHHHHHHHHh---CCCcC
Confidence 3445566777888999999999999987 44332 22111 234567889999988877766555543 33332
Q ss_pred EEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechh-hhhcCCChHH-HHHHhhhcCCCceEEE
Q 003910 331 AVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD-RMFDLGFEPQ-IRSIVGQIRPDRQTLL 408 (787)
Q Consensus 331 ~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah-~m~~~~f~~~-i~~il~~~~~~~q~ll 408 (787)
-.+|.....+. .......|-++|.|.|+..+..... |+.+++||||||| +-++.+|.-. +..++...+++.++|+
T Consensus 124 ~~VGY~iRfe~--~~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIi 200 (845)
T COG1643 124 ETVGYSIRFES--KVSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLII 200 (845)
T ss_pred ceeeEEEEeec--cCCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEE
Confidence 23332222221 1123478999999999999876654 9999999999999 5555544433 3344666677899999
Q ss_pred EeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcc-hHHHHHHhcCC--cCCCCCEEEEecccccHHH
Q 003910 409 FSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAE-KLPWLLEKLPG--MIDDGDVLVFASKKTTVDE 485 (787)
Q Consensus 409 ~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~-k~~~L~~~L~~--~~~~~kvLVF~~s~~~a~~ 485 (787)
||||+..+ . +..++.+.-.+.+.... ..+...+........ -...+...+.. ....|.+|||.+...+.+.
T Consensus 201 mSATld~~--r-fs~~f~~apvi~i~GR~---fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~ 274 (845)
T COG1643 201 MSATLDAE--R-FSAYFGNAPVIEIEGRT---YPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIER 274 (845)
T ss_pred EecccCHH--H-HHHHcCCCCEEEecCCc---cceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHH
Confidence 99999644 3 44555543333332222 122333312211222 11222222211 1246899999999999999
Q ss_pred HHHHHHH----cCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEEE--------ecC------
Q 003910 486 IESQLAQ----KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN--------FDI------ 547 (787)
Q Consensus 486 l~~~L~~----~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~--------~d~------ 547 (787)
+++.|.+ ..+.+..|||.++..++.++++--..|+.+|++||++++.+|.|++|.+||. |++
T Consensus 275 ~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~ 354 (845)
T COG1643 275 TAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTR 354 (845)
T ss_pred HHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCcee
Confidence 9999998 3578999999999999999988888888889999999999999999999996 332
Q ss_pred ----CCCHHHHHHHhhccCCCCCCCcEEEEEEccccH
Q 003910 548 ----ARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (787)
Q Consensus 548 ----p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~ 580 (787)
|-+-.+..||.|||||.+ +|+||.|++..+.
T Consensus 355 L~~~~ISqAsA~QRaGRAGR~~--pGicyRLyse~~~ 389 (845)
T COG1643 355 LETEPISKASADQRAGRAGRTG--PGICYRLYSEEDF 389 (845)
T ss_pred eeEEEechhhhhhhccccccCC--CceEEEecCHHHH
Confidence 335677789999999997 7999999997544
No 112
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=1.5e-23 Score=233.27 Aligned_cols=308 Identities=21% Similarity=0.265 Sum_probs=204.1
Q ss_pred HHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEE
Q 003910 252 QCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSA 331 (787)
Q Consensus 252 Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~ 331 (787)
.++++..|..+--+|||++||||||.+ +|-+.+-.........++..+-|.-|.|..|..++.....-+..++-.|.+
T Consensus 261 Eq~IMEaIn~n~vvIIcGeTGsGKTTQ--vPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsY 338 (1172)
T KOG0926|consen 261 EQRIMEAINENPVVIICGETGSGKTTQ--VPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSY 338 (1172)
T ss_pred HHHHHHHhhcCCeEEEecCCCCCcccc--chHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeE
Confidence 345677777878899999999999987 776655444333323334477788999999887765554444334444444
Q ss_pred EECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhh-hhcCCChHHHHHHhhhc-------C--
Q 003910 332 VYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR-MFDLGFEPQIRSIVGQI-------R-- 401 (787)
Q Consensus 332 ~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~-m~~~~f~~~i~~il~~~-------~-- 401 (787)
.+.-... +.....|.++|.|.|+..+.. ++.|..++.|||||||. -++ .+.+..+|.++ .
T Consensus 339 qIRfd~t------i~e~T~IkFMTDGVLLrEi~~-DflL~kYSvIIlDEAHERSvn---TDILiGmLSRiV~LR~k~~ke 408 (1172)
T KOG0926|consen 339 QIRFDGT------IGEDTSIKFMTDGVLLREIEN-DFLLTKYSVIILDEAHERSVN---TDILIGMLSRIVPLRQKYYKE 408 (1172)
T ss_pred EEEeccc------cCCCceeEEecchHHHHHHHH-hHhhhhceeEEechhhhccch---HHHHHHHHHHHHHHHHHHhhh
Confidence 3321111 122478999999999998865 45699999999999994 222 22222222222 1
Q ss_pred ----CCceEEEEeccCcHHHHHHH--HHHhCC-CeEEEecccccccccceEEEEecCCCcchHHHH--HHhcCCcCCCCC
Q 003910 402 ----PDRQTLLFSATMPRKVEKLA--REILSD-PVRVTVGEVGMANEDITQVVHVIPSDAEKLPWL--LEKLPGMIDDGD 472 (787)
Q Consensus 402 ----~~~q~ll~SAT~~~~v~~l~--~~~l~~-p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L--~~~L~~~~~~~k 472 (787)
...++|+||||+. +.++. +.++.. |-.+.+.... -.+.-+|..-.....-...+ .-.+.+.++.|.
T Consensus 409 ~~~~kpLKLIIMSATLR--VsDFtenk~LFpi~pPlikVdARQ---fPVsIHF~krT~~DYi~eAfrKtc~IH~kLP~G~ 483 (1172)
T KOG0926|consen 409 QCQIKPLKLIIMSATLR--VSDFTENKRLFPIPPPLIKVDARQ---FPVSIHFNKRTPDDYIAEAFRKTCKIHKKLPPGG 483 (1172)
T ss_pred hcccCceeEEEEeeeEE--ecccccCceecCCCCceeeeeccc---CceEEEeccCCCchHHHHHHHHHHHHhhcCCCCc
Confidence 2457999999984 22222 122222 2233332211 12222222111111000111 112344567899
Q ss_pred EEEEecccccHHHHHHHHHHc-----------------------------------------------------------
Q 003910 473 VLVFASKKTTVDEIESQLAQK----------------------------------------------------------- 493 (787)
Q Consensus 473 vLVF~~s~~~a~~l~~~L~~~----------------------------------------------------------- 493 (787)
||||+..+.+++.|+..|++.
T Consensus 484 ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~ 563 (1172)
T KOG0926|consen 484 ILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFAS 563 (1172)
T ss_pred EEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchh
Confidence 999999999999999999762
Q ss_pred ----------------------------------------CCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhcc
Q 003910 494 ----------------------------------------GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARG 533 (787)
Q Consensus 494 ----------------------------------------g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rG 533 (787)
.+.|..|++-++...+.+++..-..|..-++|||++++..
T Consensus 564 ~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETS 643 (1172)
T KOG0926|consen 564 LRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETS 643 (1172)
T ss_pred hhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcc
Confidence 1227888899999999999999999999999999999999
Q ss_pred CCCCCccEEEE--------ecCCCCHHHH----------HHHhhccCCCCCCCcEEEEEEccc
Q 003910 534 LDIKSIKSVVN--------FDIARDMDMH----------VHRIGRTGRAGDKDGTAYTLVTQK 578 (787)
Q Consensus 534 lDip~v~~VI~--------~d~p~s~~~y----------~QriGR~gR~G~~~G~~i~l~~~~ 578 (787)
|.||+|++||. ||.-..+..| -||.||+||.| .|+||.|++..
T Consensus 644 LTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg--pGHcYRLYSSA 704 (1172)
T KOG0926|consen 644 LTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG--PGHCYRLYSSA 704 (1172)
T ss_pred cccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC--CCceeehhhhH
Confidence 99999999995 6655555444 49999999998 79999998753
No 113
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.89 E-value=7.6e-22 Score=227.01 Aligned_cols=325 Identities=18% Similarity=0.226 Sum_probs=214.3
Q ss_pred CCCcHHHHHHHHHHHc---C-------CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHH
Q 003910 246 EKPTSIQCQALPIILS---G-------RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIY 315 (787)
Q Consensus 246 ~~ptp~Q~~ai~~il~---g-------rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~ 315 (787)
..++|+|++++..+.. | ..+|++..+|+|||++ +++++..++++.+-...--.++|||+|. .|+..|+
T Consensus 237 ~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq-~IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWk 314 (776)
T KOG0390|consen 237 KILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQ-CISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWK 314 (776)
T ss_pred hhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHH-HHHHHHHHHHhCcCccccccccEEEccH-HHHHHHH
Confidence 4688999999998763 2 2488999999999998 5556666665533322233568999997 7889999
Q ss_pred HHHHHHhhhcCceEEEEECCCCh-HHH---HHHH---hcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCC
Q 003910 316 LETKKFAKSHGIRVSAVYGGMSK-LDQ---FKEL---KAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG 388 (787)
Q Consensus 316 ~~~~~~~~~~~i~v~~~~gg~~~-~~~---~~~l---~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~ 388 (787)
++|.+|.....+....+++.... +.. +..+ ....-|++.+++.+.+.+. .+.+..+++||+||.|++.+.
T Consensus 315 kEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~--~il~~~~glLVcDEGHrlkN~- 391 (776)
T KOG0390|consen 315 KEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCR--KILLIRPGLLVCDEGHRLKNS- 391 (776)
T ss_pred HHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHH--HHhcCCCCeEEECCCCCccch-
Confidence 99999988667777778887664 111 1111 1136788999999986554 455678999999999998875
Q ss_pred ChHHHHHHhhhcCCCceEEEEecc-CcHHHHHHHHHHh-CCC----------------eEE-------------------
Q 003910 389 FEPQIRSIVGQIRPDRQTLLFSAT-MPRKVEKLAREIL-SDP----------------VRV------------------- 431 (787)
Q Consensus 389 f~~~i~~il~~~~~~~q~ll~SAT-~~~~v~~l~~~~l-~~p----------------~~i------------------- 431 (787)
...+...|..+...++ |++|.| +.+++.++..-+. .+| +.-
T Consensus 392 -~s~~~kaL~~l~t~rR-VLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~e 469 (776)
T KOG0390|consen 392 -DSLTLKALSSLKTPRR-VLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQE 469 (776)
T ss_pred -hhHHHHHHHhcCCCce-EEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHH
Confidence 5567777777766654 555666 5555444422110 000 000
Q ss_pred -----------Eec-ccccccccceEEEEecC------------------------------------------------
Q 003910 432 -----------TVG-EVGMANEDITQVVHVIP------------------------------------------------ 451 (787)
Q Consensus 432 -----------~v~-~~~~~~~~i~q~~~~~~------------------------------------------------ 451 (787)
.-+ ......+.....+.++.
T Consensus 470 L~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~ 549 (776)
T KOG0390|consen 470 LRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEKT 549 (776)
T ss_pred HHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhcccccc
Confidence 000 00000000000111110
Q ss_pred -------------------------CCcchHHHHHHhcCCcCC--CCCEEEEecccccHHHHHHHHHHcCCceeeccCCC
Q 003910 452 -------------------------SDAEKLPWLLEKLPGMID--DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDK 504 (787)
Q Consensus 452 -------------------------~~~~k~~~L~~~L~~~~~--~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~ 504 (787)
....|+..|+.++..... ..++.+..|-+...+.+...++..|+.+..|||.|
T Consensus 550 ~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~ 629 (776)
T KOG0390|consen 550 EKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKT 629 (776)
T ss_pred cccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCC
Confidence 001122223332211100 11344445566667777777777899999999999
Q ss_pred CHHHHHHHHHHhhcCC---ccEEEEehhhhccCCCCCccEEEEecCCCCHHHHHHHhhccCCCCCCCcE-EEEEEcc
Q 003910 505 DQASRMEILQKFKSGV---YHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGT-AYTLVTQ 577 (787)
Q Consensus 505 ~~~eR~~~l~~F~~G~---~~VLVaT~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~-~i~l~~~ 577 (787)
+..+|+.+++.|++.. .-+|++|.+.+.||++-+++.||+||++|||..-.|+++|+.|.||+..+ +|.|++.
T Consensus 630 ~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlat 706 (776)
T KOG0390|consen 630 SIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLAT 706 (776)
T ss_pred chHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecC
Confidence 9999999999998743 44677889999999999999999999999999999999999999966544 4556654
No 114
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.89 E-value=2.1e-22 Score=223.63 Aligned_cols=304 Identities=20% Similarity=0.255 Sum_probs=206.9
Q ss_pred HHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhh-hcCceE
Q 003910 251 IQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK-SHGIRV 329 (787)
Q Consensus 251 ~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~-~~~i~v 329 (787)
+-.+.+..+..++-+|++++||||||.+ +|-+ +++..- ....++.+.-|.|..|..++.....-.. ..|-.|
T Consensus 55 ~r~~il~~ve~nqvlIviGeTGsGKSTQ--ipQy--L~eaG~---~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~V 127 (674)
T KOG0922|consen 55 YRDQILYAVEDNQVLIVIGETGSGKSTQ--IPQY--LAEAGF---ASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEV 127 (674)
T ss_pred HHHHHHHHHHHCCEEEEEcCCCCCcccc--HhHH--HHhccc---ccCCcEEeecCchHHHHHHHHHHHHHhCCCcCcee
Confidence 3456677777889999999999999987 4433 322211 1122378899999998887655444322 223333
Q ss_pred EEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhh-hhcCCChHHHHHHhhh---cCCCce
Q 003910 330 SAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR-MFDLGFEPQIRSIVGQ---IRPDRQ 405 (787)
Q Consensus 330 ~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~-m~~~~f~~~i~~il~~---~~~~~q 405 (787)
.+.+--.... .....|.++|.|.|++.+.... .|+.+++|||||||. -+. .+.+..+|.. -+++.+
T Consensus 128 GY~IRFed~t------s~~TrikymTDG~LLRE~l~Dp-~LskYsvIIlDEAHERsl~---TDiLlGlLKki~~~R~~Lk 197 (674)
T KOG0922|consen 128 GYTIRFEDST------SKDTRIKYMTDGMLLREILKDP-LLSKYSVIILDEAHERSLH---TDILLGLLKKILKKRPDLK 197 (674)
T ss_pred eeEEEecccC------CCceeEEEecchHHHHHHhcCC-ccccccEEEEechhhhhhH---HHHHHHHHHHHHhcCCCce
Confidence 3322211111 1137899999999999886554 489999999999994 222 2233333333 356789
Q ss_pred EEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcch---HHHHHHhcCCcCCCCCEEEEeccccc
Q 003910 406 TLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEK---LPWLLEKLPGMIDDGDVLVFASKKTT 482 (787)
Q Consensus 406 ~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k---~~~L~~~L~~~~~~~kvLVF~~s~~~ 482 (787)
+|++|||+..+ ....|+.+...+.+.... ..+...+..-+....- +..+++ +....+.|.+|||.+.+++
T Consensus 198 lIimSATlda~---kfS~yF~~a~i~~i~GR~---fPVei~y~~~p~~dYv~a~~~tv~~-Ih~~E~~GDILvFLtGqeE 270 (674)
T KOG0922|consen 198 LIIMSATLDAE---KFSEYFNNAPILTIPGRT---FPVEILYLKEPTADYVDAALITVIQ-IHLTEPPGDILVFLTGQEE 270 (674)
T ss_pred EEEEeeeecHH---HHHHHhcCCceEeecCCC---CceeEEeccCCchhhHHHHHHHHHH-HHccCCCCCEEEEeCCHHH
Confidence 99999999633 456666663333332221 1223322222111111 111222 2233567899999999999
Q ss_pred HHHHHHHHHHc----C----CceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEEE--------ec
Q 003910 483 VDEIESQLAQK----G----FKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN--------FD 546 (787)
Q Consensus 483 a~~l~~~L~~~----g----~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~--------~d 546 (787)
.+.+++.|.+. . .-+..+||.++.+++.+++..-..|..+|+|+|++++..|.|+++..||. |+
T Consensus 271 Ie~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~ 350 (674)
T KOG0922|consen 271 IEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYN 350 (674)
T ss_pred HHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeec
Confidence 99999999764 1 13578999999999999999989999999999999999999999999996 44
Q ss_pred C----------CCCHHHHHHHhhccCCCCCCCcEEEEEEccccH
Q 003910 547 I----------ARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (787)
Q Consensus 547 ~----------p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~ 580 (787)
+ |-|...-.||.||+||.| +|+||.|++..+.
T Consensus 351 p~~g~~~L~v~~ISkasA~QRaGRAGRt~--pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 351 PRTGLDSLIVVPISKASANQRAGRAGRTG--PGKCYRLYTESAY 392 (674)
T ss_pred cccCccceeEEechHHHHhhhcccCCCCC--CceEEEeeeHHHH
Confidence 3 346677789999999997 7999999998765
No 115
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.88 E-value=7.3e-22 Score=216.63 Aligned_cols=310 Identities=20% Similarity=0.275 Sum_probs=216.4
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhc
Q 003910 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (787)
Q Consensus 246 ~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~ 325 (787)
..-+++-.+.|.++..++-+||.++||||||.+ ||-+.+-... . ..+.++-+..|.|..|..++..+.+- .
T Consensus 264 LPVy~ykdell~av~e~QVLiI~GeTGSGKTTQ--iPQyL~EaGy---t-k~gk~IgcTQPRRVAAmSVAaRVA~E---M 334 (902)
T KOG0923|consen 264 LPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQ--IPQYLYEAGY---T-KGGKKIGCTQPRRVAAMSVAARVAEE---M 334 (902)
T ss_pred CCchhhHHHHHHHHHhCcEEEEEcCCCCCcccc--ccHHHHhccc---c-cCCceEeecCcchHHHHHHHHHHHHH---h
Confidence 334677788888888999999999999999987 6655443221 1 23455778899999999886555443 3
Q ss_pred CceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechh-hhhcCCChHHHHHHhhhcCCCc
Q 003910 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD-RMFDLGFEPQIRSIVGQIRPDR 404 (787)
Q Consensus 326 ~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah-~m~~~~f~~~i~~il~~~~~~~ 404 (787)
+++...-+|..-+.+.+.. ...-|-++|.|+|+..+... ..|.++++||||||| +-+..+..-.+..-+..++|+.
T Consensus 335 gvkLG~eVGYsIRFEdcTS--ekTvlKYMTDGmLlREfL~e-pdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdL 411 (902)
T KOG0923|consen 335 GVKLGHEVGYSIRFEDCTS--EKTVLKYMTDGMLLREFLSE-PDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDL 411 (902)
T ss_pred CcccccccceEEEeccccC--cceeeeeecchhHHHHHhcc-ccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcc
Confidence 4444333443333332211 23568899999999877544 468999999999999 4444333334444556678999
Q ss_pred eEEEEeccCcHHHHHHHHHHhCC-CeEEEecccccccccceEEEEecCCCcchHHHHHHhcCC---cCCCCCEEEEeccc
Q 003910 405 QTLLFSATMPRKVEKLAREILSD-PVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPG---MIDDGDVLVFASKK 480 (787)
Q Consensus 405 q~ll~SAT~~~~v~~l~~~~l~~-p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~---~~~~~kvLVF~~s~ 480 (787)
++|+.|||+... + ...|+.+ |++...+... .+...+...+. .+-+...+..+.+ ..+.|.||||...+
T Consensus 412 KllIsSAT~DAe--k-FS~fFDdapIF~iPGRRy----PVdi~Yt~~PE-AdYldAai~tVlqIH~tqp~GDILVFltGQ 483 (902)
T KOG0923|consen 412 KLLISSATMDAE--K-FSAFFDDAPIFRIPGRRY----PVDIFYTKAPE-ADYLDAAIVTVLQIHLTQPLGDILVFLTGQ 483 (902)
T ss_pred eEEeeccccCHH--H-HHHhccCCcEEeccCccc----ceeeecccCCc-hhHHHHHHhhheeeEeccCCccEEEEeccH
Confidence 999999999643 3 4455554 5554443322 22222222222 2233332222221 22457899999999
Q ss_pred ccHHHHHHHHHHc---------CCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEEEec-----
Q 003910 481 TTVDEIESQLAQK---------GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFD----- 546 (787)
Q Consensus 481 ~~a~~l~~~L~~~---------g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~~d----- 546 (787)
++.+.....|... .+-++.||..++...+..+++--..|..+|++||++++..|.|++|..||.-+
T Consensus 484 eEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~n 563 (902)
T KOG0923|consen 484 EEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQN 563 (902)
T ss_pred HHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCcccccc
Confidence 9988877777653 35588999999999999999999999999999999999999999999999633
Q ss_pred ---C----------CCCHHHHHHHhhccCCCCCCCcEEEEEEcc
Q 003910 547 ---I----------ARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ 577 (787)
Q Consensus 547 ---~----------p~s~~~y~QriGR~gR~G~~~G~~i~l~~~ 577 (787)
+ |-+-..-.||.||+||.| +|+||.|++.
T Consensus 564 synprtGmesL~v~piSKAsA~QRaGRAGRtg--PGKCfRLYt~ 605 (902)
T KOG0923|consen 564 SYNPRTGMESLLVTPISKASANQRAGRAGRTG--PGKCFRLYTA 605 (902)
T ss_pred CcCCCcCceeEEEeeechhhhhhhccccCCCC--CCceEEeech
Confidence 2 335566689999999998 7999999984
No 116
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.87 E-value=4.1e-21 Score=229.28 Aligned_cols=322 Identities=19% Similarity=0.237 Sum_probs=213.4
Q ss_pred CcHHHHHHHHHHHcC---C-CEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhh
Q 003910 248 PTSIQCQALPIILSG---R-DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (787)
Q Consensus 248 ptp~Q~~ai~~il~g---r-dvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~ 323 (787)
+++.|..++..+++. . .+++.||||.|||.+.+++++..+... ....++++++.|++.++.++++.++.+..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~----~~~~~r~i~vlP~~t~ie~~~~r~~~~~~ 271 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK----IKLKSRVIYVLPFRTIIEDMYRRAKEIFG 271 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc----ccccceEEEEccHHHHHHHHHHHHHhhhc
Confidence 489999999998854 4 788999999999999998887776442 12578899999999999999999998876
Q ss_pred hcCceEEEEECCCChHHHHHHH---------------hcCCcEEEeCHHHHHHHHHh-ccc---cccceeEEEEechhhh
Q 003910 324 SHGIRVSAVYGGMSKLDQFKEL---------------KAGCEIVIATPGRLIDMLKM-KAL---TMSRVTYLVLDEADRM 384 (787)
Q Consensus 324 ~~~i~v~~~~gg~~~~~~~~~l---------------~~~~dIIV~Tp~~L~~~l~~-~~~---~l~~i~~lViDEah~m 384 (787)
...+.....++.... ...... ..-..++++||-.+...... ... .+-..+++||||+|.+
T Consensus 272 ~~~~~~~~~h~~~~~-~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~ 350 (733)
T COG1203 272 LFSVIGKSLHSSSKE-PLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLY 350 (733)
T ss_pred ccccccccccccccc-hhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhh
Confidence 443332212232221 111100 01145666666555542211 111 1123578999999987
Q ss_pred hcCCChHHHHHHhhhc-CCCceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccc---cccceEEEEecCCCcchHHHH
Q 003910 385 FDLGFEPQIRSIVGQI-RPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMA---NEDITQVVHVIPSDAEKLPWL 460 (787)
Q Consensus 385 ~~~~f~~~i~~il~~~-~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~---~~~i~q~~~~~~~~~~k~~~L 460 (787)
.+......+..++..+ .....+|++|||+|+...+.+...+.....+........ ...+.+.. ...........+
T Consensus 351 ~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~~ 429 (733)
T COG1203 351 ADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKE-RVDVEDGPQEEL 429 (733)
T ss_pred cccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceecccccccccccccccccc-chhhhhhhhHhh
Confidence 7653233333333333 346789999999999999999888876554443211100 00111110 000000000112
Q ss_pred HHhc-CCcCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhh----cCCccEEEEehhhhccCC
Q 003910 461 LEKL-PGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFK----SGVYHVLIATDVAARGLD 535 (787)
Q Consensus 461 ~~~L-~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~----~G~~~VLVaT~v~~rGlD 535 (787)
.... .......+++|.|||+..|..++..|+..+..+.++|+.+...+|.+.++.++ .+...|+|||++++.|||
T Consensus 430 ~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvD 509 (733)
T COG1203 430 IELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVD 509 (733)
T ss_pred hhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEec
Confidence 2222 22234569999999999999999999998888999999999999998888655 467889999999999999
Q ss_pred CCCccEEEEecCCCCHHHHHHHhhccCCCCCC-CcEEEEEEccc
Q 003910 536 IKSIKSVVNFDIARDMDMHVHRIGRTGRAGDK-DGTAYTLVTQK 578 (787)
Q Consensus 536 ip~v~~VI~~d~p~s~~~y~QriGR~gR~G~~-~G~~i~l~~~~ 578 (787)
|. .+++| --+..++..+||+||++|-|.+ .|.++.+....
T Consensus 510 id-fd~mI--Te~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 510 ID-FDVLI--TELAPIDSLIQRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred cc-cCeee--ecCCCHHHHHHHHHHHhhcccccCCceeEeeccc
Confidence 95 45444 3455688999999999999933 56676665443
No 117
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.87 E-value=2.6e-21 Score=212.44 Aligned_cols=312 Identities=20% Similarity=0.261 Sum_probs=207.3
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhh
Q 003910 245 YEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS 324 (787)
Q Consensus 245 ~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~ 324 (787)
+......+.+.+..|..++-+|++++||||||.+ +| ++|+.... .....+-+..|.|..|..++..+..-
T Consensus 354 ~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQ--l~--QyL~edGY---~~~GmIGcTQPRRvAAiSVAkrVa~E--- 423 (1042)
T KOG0924|consen 354 YLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQ--LA--QYLYEDGY---ADNGMIGCTQPRRVAAISVAKRVAEE--- 423 (1042)
T ss_pred hcchHHHHHHHHHHHhhCcEEEEEecCCCCchhh--hH--HHHHhccc---ccCCeeeecCchHHHHHHHHHHHHHH---
Confidence 3344566777777777888899999999999987 33 33333221 12345677889999998876555443
Q ss_pred cCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechh-hhhcCCChHHHHHHhhhcCCC
Q 003910 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD-RMFDLGFEPQIRSIVGQIRPD 403 (787)
Q Consensus 325 ~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah-~m~~~~f~~~i~~il~~~~~~ 403 (787)
.+.....-+|..-..+.... ....|-++|.|.|+....... .|.++++||+|||| +-++.+..-.+.+.+-.-+.+
T Consensus 424 M~~~lG~~VGYsIRFEdvT~--~~T~IkymTDGiLLrEsL~d~-~L~kYSviImDEAHERslNtDilfGllk~~larRrd 500 (1042)
T KOG0924|consen 424 MGVTLGDTVGYSIRFEDVTS--EDTKIKYMTDGILLRESLKDR-DLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRD 500 (1042)
T ss_pred hCCccccccceEEEeeecCC--CceeEEEeccchHHHHHhhhh-hhhheeEEEechhhhcccchHHHHHHHHHHHHhhcc
Confidence 34444444443333332211 236789999999988654433 58899999999999 445433222333333333568
Q ss_pred ceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcchHHHHHH-hc--CCcCCCCCEEEEeccc
Q 003910 404 RQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLE-KL--PGMIDDGDVLVFASKK 480 (787)
Q Consensus 404 ~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L~~-~L--~~~~~~~kvLVF~~s~ 480 (787)
.++|++|||+. .+.+...|-+-|.....+... .+...+...+- .+-..+.+. .+ ......|.+|||...+
T Consensus 501 lKliVtSATm~--a~kf~nfFgn~p~f~IpGRTy----PV~~~~~k~p~-eDYVeaavkq~v~Ihl~~~~GdilIfmtGq 573 (1042)
T KOG0924|consen 501 LKLIVTSATMD--AQKFSNFFGNCPQFTIPGRTY----PVEIMYTKTPV-EDYVEAAVKQAVQIHLSGPPGDILIFMTGQ 573 (1042)
T ss_pred ceEEEeecccc--HHHHHHHhCCCceeeecCCcc----ceEEEeccCch-HHHHHHHHhhheEeeccCCCCCEEEecCCC
Confidence 89999999995 455555554455444333221 12222211111 111222221 11 1223467899999999
Q ss_pred ccHHHHHHHHHHc----------CCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEEEecC---
Q 003910 481 TTVDEIESQLAQK----------GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDI--- 547 (787)
Q Consensus 481 ~~a~~l~~~L~~~----------g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~~d~--- 547 (787)
+..+..+..++.. ++.+..|++.|++.-+.+++..-..|..+++|||++++..|.|+++.+||..+.
T Consensus 574 ediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~ 653 (1042)
T KOG0924|consen 574 EDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKL 653 (1042)
T ss_pred cchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceee
Confidence 8876665555432 678999999999999999988888899999999999999999999999996332
Q ss_pred ---------------CCCHHHHHHHhhccCCCCCCCcEEEEEEccc
Q 003910 548 ---------------ARDMDMHVHRIGRTGRAGDKDGTAYTLVTQK 578 (787)
Q Consensus 548 ---------------p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~ 578 (787)
|-+-..-.||.||+||.| +|+||.+++..
T Consensus 654 kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~--pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 654 KVYNPRIGMDALQIVPISQANADQRAGRAGRTG--PGTCYRLYTED 697 (1042)
T ss_pred eecccccccceeEEEechhccchhhccccCCCC--Ccceeeehhhh
Confidence 445566679999999998 79999999873
No 118
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.87 E-value=1.5e-20 Score=206.44 Aligned_cols=292 Identities=17% Similarity=0.210 Sum_probs=219.3
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHHHhhhc-------------Cc------eEEEEECCCChHHHHHHHhc----------
Q 003910 297 EGPIGVICAPTRELAHQIYLETKKFAKSH-------------GI------RVSAVYGGMSKLDQFKELKA---------- 347 (787)
Q Consensus 297 ~~p~vLIl~PtreLa~Qi~~~~~~~~~~~-------------~i------~v~~~~gg~~~~~~~~~l~~---------- 347 (787)
..|+||||+|+|..|.++++.+.+++... ++ ....-.........+..+..
T Consensus 36 tRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlG 115 (442)
T PF06862_consen 36 TRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLG 115 (442)
T ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEe
Confidence 47999999999999999999998887641 10 00000001122333444432
Q ss_pred ---------------CCcEEEeCHHHHHHHHHh------ccccccceeEEEEechhhhh--cCCChHHHHHHhhhcCC--
Q 003910 348 ---------------GCEIVIATPGRLIDMLKM------KALTMSRVTYLVLDEADRMF--DLGFEPQIRSIVGQIRP-- 402 (787)
Q Consensus 348 ---------------~~dIIV~Tp~~L~~~l~~------~~~~l~~i~~lViDEah~m~--~~~f~~~i~~il~~~~~-- 402 (787)
.+|||||+|-.|...+.. ..-.|++|+++|||.||.|+ +|.+...+...++..|.
T Consensus 116 ik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~ 195 (442)
T PF06862_consen 116 IKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKS 195 (442)
T ss_pred EEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCC
Confidence 389999999999998874 23348999999999999665 44444555555555543
Q ss_pred -------------------CceEEEEeccCcHHHHHHHHHHhCCCe---EEEe-----cccccccccceEEEEecCC---
Q 003910 403 -------------------DRQTLLFSATMPRKVEKLAREILSDPV---RVTV-----GEVGMANEDITQVVHVIPS--- 452 (787)
Q Consensus 403 -------------------~~q~ll~SAT~~~~v~~l~~~~l~~p~---~i~v-----~~~~~~~~~i~q~~~~~~~--- 452 (787)
-||+|++|+...+++..+.+..|.|.. .+.. +........+.|.+..++.
T Consensus 196 ~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~ 275 (442)
T PF06862_consen 196 HDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSP 275 (442)
T ss_pred CCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCc
Confidence 279999999999999999999887742 2221 1223445667787776543
Q ss_pred ---CcchHHHHHH-hcCCcC---CCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEE
Q 003910 453 ---DAEKLPWLLE-KLPGMI---DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLI 525 (787)
Q Consensus 453 ---~~~k~~~L~~-~L~~~~---~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLV 525 (787)
...++..+.. +|..+. ..+++|||++++-+..+|.++|++..+.++.||.+.++.+..++...|..|+.+|||
T Consensus 276 ~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL 355 (442)
T PF06862_consen 276 ADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILL 355 (442)
T ss_pred chhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEE
Confidence 2334554444 233322 456899999999999999999999999999999999999999999999999999999
Q ss_pred Eehhhh--ccCCCCCccEEEEecCCCCHHHHHHHhhccCCCC-----CCCcEEEEEEccccHHHHHHHHH
Q 003910 526 ATDVAA--RGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAG-----DKDGTAYTLVTQKEARFAGELVN 588 (787)
Q Consensus 526 aT~v~~--rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G-----~~~G~~i~l~~~~d~~~~~~l~~ 588 (787)
.|..++ +...|.++++||+|.+|.++..|...+.-..... .....|.+|++..|.-.++.|+-
T Consensus 356 ~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIVG 425 (442)
T PF06862_consen 356 YTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIVG 425 (442)
T ss_pred EEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHhC
Confidence 999988 8899999999999999999999988886554432 13579999999999988887763
No 119
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.87 E-value=8.7e-20 Score=209.80 Aligned_cols=286 Identities=27% Similarity=0.399 Sum_probs=202.3
Q ss_pred HHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHH
Q 003910 238 HAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLE 317 (787)
Q Consensus 238 ~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~ 317 (787)
+.+++.--..|+..|+--...++.|+.+-+.||||.|||. |.+.+-.++. ..|.+++||+||+.|+.|+++.
T Consensus 73 ~fF~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTT-fg~~~sl~~a-------~kgkr~yii~PT~~Lv~Q~~~k 144 (1187)
T COG1110 73 EFFKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTT-FGLLMSLYLA-------KKGKRVYIIVPTTTLVRQVYER 144 (1187)
T ss_pred HHHHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhH-HHHHHHHHHH-------hcCCeEEEEecCHHHHHHHHHH
Confidence 3444543348999999999999999999999999999996 4544444442 2367899999999999999999
Q ss_pred HHHHhhhcC-ceEEEEECCC-ChH---HHHHHHhc-CCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhc-----
Q 003910 318 TKKFAKSHG-IRVSAVYGGM-SKL---DQFKELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFD----- 386 (787)
Q Consensus 318 ~~~~~~~~~-i~v~~~~gg~-~~~---~~~~~l~~-~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~----- 386 (787)
+++++...+ ..+.++|++. +.. +....+.+ +.||+|+|..-|...+.. +.--++++|++|.+|.++.
T Consensus 145 l~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~--L~~~kFdfifVDDVDA~LkaskNv 222 (1187)
T COG1110 145 LKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE--LSKLKFDFIFVDDVDAILKASKNV 222 (1187)
T ss_pred HHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH--hcccCCCEEEEccHHHHHhccccH
Confidence 999997666 5555545554 332 23344444 599999998777664432 1123689999999997753
Q ss_pred ------CCChHH-------HHHHhhhc------------------------CCCceEEEEeccCcHH--HHHHHHHHhCC
Q 003910 387 ------LGFEPQ-------IRSIVGQI------------------------RPDRQTLLFSATMPRK--VEKLAREILSD 427 (787)
Q Consensus 387 ------~~f~~~-------i~~il~~~------------------------~~~~q~ll~SAT~~~~--v~~l~~~~l~~ 427 (787)
.||... +..+...+ ...-++++.|||..+. -..+.+.+++
T Consensus 223 DriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlg- 301 (1187)
T COG1110 223 DRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLG- 301 (1187)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhC-
Confidence 233331 11111111 1235899999996432 2345566654
Q ss_pred CeEEEecccccccccceEEEEecCCCcchHHHHHHhcCCcCCCCCEEEEecc---cccHHHHHHHHHHcCCceeeccCCC
Q 003910 428 PVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASK---KTTVDEIESQLAQKGFKAAALHGDK 504 (787)
Q Consensus 428 p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s---~~~a~~l~~~L~~~g~~v~~lhg~~ 504 (787)
+.++.......+|...+... .-...++++++.+ ....|||++. ++.++.|+++|+..|+++..+|..
T Consensus 302 ---FevG~~~~~LRNIvD~y~~~----~~~e~~~elvk~l--G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~- 371 (1187)
T COG1110 302 ---FEVGSGGEGLRNIVDIYVES----ESLEKVVELVKKL--GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE- 371 (1187)
T ss_pred ---CccCccchhhhheeeeeccC----ccHHHHHHHHHHh--CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-
Confidence 33444444555666554433 3334444444443 2378999999 999999999999999999999974
Q ss_pred CHHHHHHHHHHhhcCCccEEEEe----hhhhccCCCCC-ccEEEEecCC
Q 003910 505 DQASRMEILQKFKSGVYHVLIAT----DVAARGLDIKS-IKSVVNFDIA 548 (787)
Q Consensus 505 ~~~eR~~~l~~F~~G~~~VLVaT----~v~~rGlDip~-v~~VI~~d~p 548 (787)
....++.|..|+++|||.+ .++-||||+|. ++.+|+|+.|
T Consensus 372 ----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 372 ----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred ----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 3678999999999999976 67889999998 8899999988
No 120
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.87 E-value=5.8e-22 Score=226.40 Aligned_cols=314 Identities=20% Similarity=0.293 Sum_probs=215.5
Q ss_pred CCCcHHHHHHHHHHHc----CCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003910 246 EKPTSIQCQALPIILS----GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (787)
Q Consensus 246 ~~ptp~Q~~ai~~il~----grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~ 321 (787)
.++.+||..++.|+.+ .-+.|++.+||.|||++ .+.++.+++... ...||+ |||||+-.|. .|..++.+|
T Consensus 393 G~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQ-tIsLitYLmE~K---~~~GP~-LvivPlstL~-NW~~Ef~kW 466 (1157)
T KOG0386|consen 393 GELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQ-TISLITYLMEHK---QMQGPF-LIIVPLSTLV-NWSSEFPKW 466 (1157)
T ss_pred CCCchhhhhhhHHHhhccCCCcccccchhcccchHHH-HHHHHHHHHHHc---ccCCCe-EEeccccccC-Cchhhcccc
Confidence 4788999999999873 35899999999999998 677788888764 345776 8889999888 589999999
Q ss_pred hhhcCceEEEEECCCChHHHHH-HH-hcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHhhh
Q 003910 322 AKSHGIRVSAVYGGMSKLDQFK-EL-KAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQ 399 (787)
Q Consensus 322 ~~~~~i~v~~~~gg~~~~~~~~-~l-~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~ 399 (787)
++ .+..+.+.|....+..+. .+ ...++|+++|++.++. .+..+.-.+|.|+||||.|+|.+. ...+...+..
T Consensus 467 aP--Sv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmKNa--~~KLt~~L~t 540 (1157)
T KOG0386|consen 467 AP--SVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMKNA--ICKLTDTLNT 540 (1157)
T ss_pred cc--ceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccccch--hhHHHHHhhc
Confidence 87 555555555333222111 11 2358999999998876 333344457889999999999763 2222222221
Q ss_pred cCCCceEEEEeccC-cHHHHHH----------------------------------------------------------
Q 003910 400 IRPDRQTLLFSATM-PRKVEKL---------------------------------------------------------- 420 (787)
Q Consensus 400 ~~~~~q~ll~SAT~-~~~v~~l---------------------------------------------------------- 420 (787)
.-.....+++|.|+ .+.+.+|
T Consensus 541 ~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRR 620 (1157)
T KOG0386|consen 541 HYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRR 620 (1157)
T ss_pred cccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHh
Confidence 11111223333332 1111111
Q ss_pred ----------------------------------------------------------HHHHhCCCeEEEeccccccccc
Q 003910 421 ----------------------------------------------------------AREILSDPVRVTVGEVGMANED 442 (787)
Q Consensus 421 ----------------------------------------------------------~~~~l~~p~~i~v~~~~~~~~~ 442 (787)
++++|++|....--.. .
T Consensus 621 lKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~-----~ 695 (1157)
T KOG0386|consen 621 LKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVEN-----S 695 (1157)
T ss_pred hhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhcc-----c
Confidence 2333333322210000 0
Q ss_pred ceEEEE--ecCCCcchHHHHHHhcCCcCC-CCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcC
Q 003910 443 ITQVVH--VIPSDAEKLPWLLEKLPGMID-DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSG 519 (787)
Q Consensus 443 i~q~~~--~~~~~~~k~~~L~~~L~~~~~-~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G 519 (787)
+...+. .+-....|+..|..+|.++.. +++||.||+.....+.+..+|.-..+....+.|.....+|-..+..|..-
T Consensus 696 ~~~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~P 775 (1157)
T KOG0386|consen 696 YTLHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAP 775 (1157)
T ss_pred cccccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCC
Confidence 000000 000123566666666665543 56999999999999999999999999999999999999999999999875
Q ss_pred C---ccEEEEehhhhccCCCCCccEEEEecCCCCHHHHHHHhhccCCCCCCC-cEEEEEEc
Q 003910 520 V---YHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKD-GTAYTLVT 576 (787)
Q Consensus 520 ~---~~VLVaT~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~-G~~i~l~~ 576 (787)
. +.+|++|.+.+.|||+..+++||+||..|++..+.|+..|++|+|++. ..++.+++
T Consensus 776 ds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~t 836 (1157)
T KOG0386|consen 776 DSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLIT 836 (1157)
T ss_pred CCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeeh
Confidence 4 457899999999999999999999999999999999999999999543 34444544
No 121
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.87 E-value=5.2e-21 Score=210.34 Aligned_cols=148 Identities=24% Similarity=0.406 Sum_probs=121.3
Q ss_pred CcchHHHHHHhcCCcCCC-CCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCC-ccEEEEehhh
Q 003910 453 DAEKLPWLLEKLPGMIDD-GDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGV-YHVLIATDVA 530 (787)
Q Consensus 453 ~~~k~~~L~~~L~~~~~~-~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~-~~VLVaT~v~ 530 (787)
+..|+..|.++|.++... .++|+|.+..++.+.+.+||...+|....|.|.....+|..++.+|+..+ +.+|++|.+.
T Consensus 1026 dSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAG 1105 (1185)
T KOG0388|consen 1026 DSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAG 1105 (1185)
T ss_pred cccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccC
Confidence 456666676776665544 48999999999999999999999999999999999999999999998855 4678899999
Q ss_pred hccCCCCCccEEEEecCCCCHHHHHHHhhccCCCCC-CCcEEEEEEccccHHHHHHHHHHHHHcCCCccHHHHHHHHh
Q 003910 531 ARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGD-KDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLAMK 607 (787)
Q Consensus 531 ~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G~-~~G~~i~l~~~~d~~~~~~l~~~l~~~~~~vp~~l~~~a~~ 607 (787)
+-|||+..+++||+||..|||.-..|++.|++|.|+ +..++|.|++..-.. .+.|..++|. .++..+.+.
T Consensus 1106 GLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvE-----Ek~l~rA~qK--~~vQq~Vm~ 1176 (1185)
T KOG0388|consen 1106 GLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVE-----EKVLERANQK--DEVQQMVMH 1176 (1185)
T ss_pred cccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHH-----HHHHHHhhhH--HHHHHHHHc
Confidence 999999999999999999999999999999999994 446788888765443 2345555552 345555553
No 122
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.86 E-value=1.3e-19 Score=220.52 Aligned_cols=345 Identities=20% Similarity=0.228 Sum_probs=213.1
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHH----HHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCc
Q 003910 232 FSTQLMHAISKQGYEKPTSIQCQALP----IILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPT 307 (787)
Q Consensus 232 l~~~l~~~l~~~g~~~ptp~Q~~ai~----~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~Pt 307 (787)
+++.+...+...||. ++|.|.+.+. .+..++++++.|+||+|||++|++|++.++. .+.++||.+||
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~--------~~~~vvi~t~t 301 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI--------TEKPVVISTNT 301 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc--------CCCeEEEEeCc
Confidence 344666777777876 8999998776 4557899999999999999999999988764 23469999999
Q ss_pred HHHHHHHHH-HHHHHhhhcC--ceEEEEECCCChH---------------HH----------------------------
Q 003910 308 RELAHQIYL-ETKKFAKSHG--IRVSAVYGGMSKL---------------DQ---------------------------- 341 (787)
Q Consensus 308 reLa~Qi~~-~~~~~~~~~~--i~v~~~~gg~~~~---------------~~---------------------------- 341 (787)
++|..|+.. ++..+.+..+ ++++++.|+...- ..
T Consensus 302 ~~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~ 381 (850)
T TIGR01407 302 KVLQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGG 381 (850)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCc
Confidence 999999865 5666655444 7777777653210 00
Q ss_pred ----HH------------------------HHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCC-----
Q 003910 342 ----FK------------------------ELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG----- 388 (787)
Q Consensus 342 ----~~------------------------~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~----- 388 (787)
+. .....++|||+.+..|+..+......+....+|||||||+|.+..
T Consensus 382 ~~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a~~~~~ 461 (850)
T TIGR01407 382 NKMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIAENQLQ 461 (850)
T ss_pred chhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHHHHHhc
Confidence 00 001237999999999988765443335667899999999874300
Q ss_pred --C-----hH----------------------------------------------------------------HHHHHh
Q 003910 389 --F-----EP----------------------------------------------------------------QIRSIV 397 (787)
Q Consensus 389 --f-----~~----------------------------------------------------------------~i~~il 397 (787)
+ .. .+...+
T Consensus 462 ~~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~ 541 (850)
T TIGR01407 462 EELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFD 541 (850)
T ss_pred ceeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 0 00 000000
Q ss_pred hh---------------------c---------------------------CCCceEEEEeccCcHH-HHHHHHHHhCCC
Q 003910 398 GQ---------------------I---------------------------RPDRQTLLFSATMPRK-VEKLAREILSDP 428 (787)
Q Consensus 398 ~~---------------------~---------------------------~~~~q~ll~SAT~~~~-v~~l~~~~l~~p 428 (787)
.. . +....+|++|||+... -.......++-+
T Consensus 542 ~~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~ 621 (850)
T TIGR01407 542 LALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLT 621 (850)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCC
Confidence 00 0 0124678999998631 122333333322
Q ss_pred --eEEEecccccccccceEEEEecCCCc---------chHHHHHHhcCCc--CCCCCEEEEecccccHHHHHHHHHH---
Q 003910 429 --VRVTVGEVGMANEDITQVVHVIPSDA---------EKLPWLLEKLPGM--IDDGDVLVFASKKTTVDEIESQLAQ--- 492 (787)
Q Consensus 429 --~~i~v~~~~~~~~~i~q~~~~~~~~~---------~k~~~L~~~L~~~--~~~~kvLVF~~s~~~a~~l~~~L~~--- 492 (787)
....+. +.......+...+++... .-...+...|.+. ...+++|||++++..++.++..|..
T Consensus 622 ~~~~~~~~--~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~ 699 (850)
T TIGR01407 622 DVHFNTIE--PTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPE 699 (850)
T ss_pred ccccceec--CCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhcc
Confidence 111111 111110112222221111 1111222222221 1357999999999999999999975
Q ss_pred -cCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCcc--EEEEecCCCC----H--------------
Q 003910 493 -KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIK--SVVNFDIARD----M-------------- 551 (787)
Q Consensus 493 -~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~--~VI~~d~p~s----~-------------- 551 (787)
.++.+ +..+.. ..|..+++.|++++..||++|+.+.+|||+|+.. .||+..+|.. +
T Consensus 700 ~~~~~~--l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~ 776 (850)
T TIGR01407 700 FEGYEV--LAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGK 776 (850)
T ss_pred ccCceE--EecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcC
Confidence 23333 333333 4788999999999999999999999999999854 6777666641 1
Q ss_pred ------------HHHHHHhhccCCCCCCCcEEEEEEccc--cHHHHHHHHHHHH
Q 003910 552 ------------DMHVHRIGRTGRAGDKDGTAYTLVTQK--EARFAGELVNSLI 591 (787)
Q Consensus 552 ------------~~y~QriGR~gR~G~~~G~~i~l~~~~--d~~~~~~l~~~l~ 591 (787)
..+.|.+||.-|..+..|. ++++... ...+-..+++.|.
T Consensus 777 ~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~-v~ilD~R~~~~~Yg~~~~~sLp 829 (850)
T TIGR01407 777 NPFYDYVLPMAIIRLRQALGRLIRRENDRGS-IVILDRRLVGKRYGKRFEKSLP 829 (850)
T ss_pred CchHHhhHHHHHHHHHHhhccccccCCceEE-EEEEccccccchHHHHHHHhCC
Confidence 2225999999998744454 4444433 3445555666553
No 123
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.86 E-value=2.9e-20 Score=217.40 Aligned_cols=314 Identities=21% Similarity=0.269 Sum_probs=228.6
Q ss_pred CcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHh-hhcC
Q 003910 248 PTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA-KSHG 326 (787)
Q Consensus 248 ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~-~~~~ 326 (787)
-+..+.+.|..+.+.+.++|+++||+|||.+.---+|.+..... ....+++..|.|--|.-+++.+.+-- ...+
T Consensus 174 a~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~-----~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g 248 (924)
T KOG0920|consen 174 AYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG-----AACNIICTQPRRISAISVAERVAKERGESLG 248 (924)
T ss_pred cHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC-----CCCeEEecCCchHHHHHHHHHHHHHhccccC
Confidence 45678888999999999999999999999985544555544332 34568889999999888877766543 2234
Q ss_pred ceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechh-hhhcCCChHHHHHHhhhcCCCce
Q 003910 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD-RMFDLGFEPQIRSIVGQIRPDRQ 405 (787)
Q Consensus 327 i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah-~m~~~~f~~~i~~il~~~~~~~q 405 (787)
-.|.+-++..+.. .....+++||.|.|++.+.. ...+..++.||+||+| |=.+.+|.-.+.+.+-..+|+.+
T Consensus 249 ~~VGYqvrl~~~~------s~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~Lk 321 (924)
T KOG0920|consen 249 EEVGYQVRLESKR------SRETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLK 321 (924)
T ss_pred CeeeEEEeeeccc------CCceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCce
Confidence 3444433332221 12378999999999999876 4568899999999999 55566677777777777789999
Q ss_pred EEEEeccCcHHHHHHHHHHhCCCeEEEeccccccc-----ccc-----------eEE------------EEec--CCCcc
Q 003910 406 TLLFSATMPRKVEKLAREILSDPVRVTVGEVGMAN-----EDI-----------TQV------------VHVI--PSDAE 455 (787)
Q Consensus 406 ~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~-----~~i-----------~q~------------~~~~--~~~~~ 455 (787)
+|+||||+. .++...|+.....+.+....... ++| .+. +... ..+..
T Consensus 322 vILMSAT~d---ae~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~ 398 (924)
T KOG0920|consen 322 VILMSATLD---AELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYD 398 (924)
T ss_pred EEEeeeecc---hHHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHH
Confidence 999999997 33566666665555443322110 000 000 0000 01112
Q ss_pred hHHHHHHhcCCcCCCCCEEEEecccccHHHHHHHHHHc-------CCceeeccCCCCHHHHHHHHHHhhcCCccEEEEeh
Q 003910 456 KLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK-------GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD 528 (787)
Q Consensus 456 k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~-------g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~ 528 (787)
-+..|+..+......|.||||.+...++..+.+.|... .+-+..+|+.|+..++..++.....|..+|+++|.
T Consensus 399 Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTN 478 (924)
T KOG0920|consen 399 LIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATN 478 (924)
T ss_pred HHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhh
Confidence 23445555555556789999999999999999999642 36788999999999999999999999999999999
Q ss_pred hhhccCCCCCccEEEE--------ecCCCC----------HHHHHHHhhccCCCCCCCcEEEEEEccc
Q 003910 529 VAARGLDIKSIKSVVN--------FDIARD----------MDMHVHRIGRTGRAGDKDGTAYTLVTQK 578 (787)
Q Consensus 529 v~~rGlDip~v~~VI~--------~d~p~s----------~~~y~QriGR~gR~G~~~G~~i~l~~~~ 578 (787)
+++..|.|++|-+||. ||+-.+ -..-.||.||+||. ..|.||.+++..
T Consensus 479 IAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv--~~G~cy~L~~~~ 544 (924)
T KOG0920|consen 479 IAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV--RPGICYHLYTRS 544 (924)
T ss_pred hHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc--cCCeeEEeechh
Confidence 9999999999999995 665443 33446999999998 589999999864
No 124
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.86 E-value=3.4e-20 Score=216.86 Aligned_cols=133 Identities=22% Similarity=0.382 Sum_probs=117.3
Q ss_pred cchHHHHHHhcCCcCC-CCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhc
Q 003910 454 AEKLPWLLEKLPGMID-DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAAR 532 (787)
Q Consensus 454 ~~k~~~L~~~L~~~~~-~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~r 532 (787)
..++..|+..|..... ..++||||+++..++.|+++|...++.+..+|+++++.+|..++..|+.|++.|||||+++++
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~r 504 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLRE 504 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcC
Confidence 4566677777765443 458999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccEEEEec-----CCCCHHHHHHHhhccCCCCCCCcEEEEEEccccHHHHHHHHH
Q 003910 533 GLDIKSIKSVVNFD-----IARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVN 588 (787)
Q Consensus 533 GlDip~v~~VI~~d-----~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~ 588 (787)
|+|+|.+++||++| .|.+...|+||+|||||.. .|.+++|++..+..+...|-+
T Consensus 505 GfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~--~G~vi~~~~~~~~~~~~ai~~ 563 (655)
T TIGR00631 505 GLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV--NGKVIMYADKITDSMQKAIEE 563 (655)
T ss_pred CeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCC--CCEEEEEEcCCCHHHHHHHHH
Confidence 99999999999998 7999999999999999974 699999998876655444433
No 125
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.85 E-value=3e-20 Score=217.05 Aligned_cols=140 Identities=21% Similarity=0.265 Sum_probs=117.8
Q ss_pred CCcchHHHHHHhcCCcC-CCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhh
Q 003910 452 SDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVA 530 (787)
Q Consensus 452 ~~~~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~ 530 (787)
....|+..|+..+.... ...++||||+++..++.|+.+|...++++.+||+ .+.+|+..+..|+.+...|+|||++|
T Consensus 579 t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMA 656 (1025)
T PRK12900 579 TRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMA 656 (1025)
T ss_pred CHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCc
Confidence 34467888888775432 3559999999999999999999999999999997 68899999999999999999999999
Q ss_pred hccCCCC---Ccc-----EEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEccccHHHH----HHHHHHHHHcC
Q 003910 531 ARGLDIK---SIK-----SVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFA----GELVNSLIAAG 594 (787)
Q Consensus 531 ~rGlDip---~v~-----~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~----~~l~~~l~~~~ 594 (787)
+||+||+ .|. +||+++.|.+...|.|++|||||.| .+|.+++|++.+|.-+- ..+...+...+
T Consensus 657 GRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqG-dpGsS~ffvSleD~Lmr~f~~~~i~~~~~~~~ 731 (1025)
T PRK12900 657 GRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQG-DPGESVFYVSLEDELMRLFGSDRVISVMDRLG 731 (1025)
T ss_pred CCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCC-CCcceEEEechhHHHHHhhCcHHHHHHHHHcC
Confidence 9999999 554 4599999999999999999999999 68999999998775431 13455555544
No 126
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.83 E-value=8.6e-19 Score=206.60 Aligned_cols=148 Identities=22% Similarity=0.336 Sum_probs=127.8
Q ss_pred cchHHHHHHhcCCcCC-CCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhc
Q 003910 454 AEKLPWLLEKLPGMID-DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAAR 532 (787)
Q Consensus 454 ~~k~~~L~~~L~~~~~-~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~r 532 (787)
..++..|+..|..... ..++||||+++..++.|+..|...++++..+||++++.+|..++..|+.|.+.|||||+++++
T Consensus 429 ~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~r 508 (652)
T PRK05298 429 KGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLRE 508 (652)
T ss_pred cccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhC
Confidence 3456677777765543 458999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccEEEEecC-----CCCHHHHHHHhhccCCCCCCCcEEEEEEcc---------ccHHHHHHHHHHHHHcCCCcc
Q 003910 533 GLDIKSIKSVVNFDI-----ARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ---------KEARFAGELVNSLIAAGQNVS 598 (787)
Q Consensus 533 GlDip~v~~VI~~d~-----p~s~~~y~QriGR~gR~G~~~G~~i~l~~~---------~d~~~~~~l~~~l~~~~~~vp 598 (787)
|+|+|.+++||++|. |.+...|+||+||+||. ..|.|++|++. .+....+++...+......+|
T Consensus 509 Gfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~--~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 586 (652)
T PRK05298 509 GLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN--VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITP 586 (652)
T ss_pred CccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC--CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCC
Confidence 999999999999885 78999999999999995 47999999984 455666666667777777788
Q ss_pred HHHHH
Q 003910 599 MELMD 603 (787)
Q Consensus 599 ~~l~~ 603 (787)
.....
T Consensus 587 ~~~~~ 591 (652)
T PRK05298 587 KTIKK 591 (652)
T ss_pred hhHHH
Confidence 77654
No 127
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.83 E-value=5.2e-19 Score=177.10 Aligned_cols=187 Identities=41% Similarity=0.627 Sum_probs=157.6
Q ss_pred CCCCCCcHHHHHHHHHHHcC-CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003910 243 QGYEKPTSIQCQALPIILSG-RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (787)
Q Consensus 243 ~g~~~ptp~Q~~ai~~il~g-rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~ 321 (787)
.++..|+++|.+++..++.. +.++++++||+|||.+++++++.++...+ ...+||++|++.++.||...+..+
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~------~~~~l~~~p~~~~~~~~~~~~~~~ 77 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK------GKRVLVLVPTRELAEQWAEELKKL 77 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC------CCcEEEEeCCHHHHHHHHHHHHHH
Confidence 45678999999999999999 99999999999999998888888775432 356899999999999999999998
Q ss_pred hhhcCceEEEEECCCChHHHHHHHhcCC-cEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHhhhc
Q 003910 322 AKSHGIRVSAVYGGMSKLDQFKELKAGC-EIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI 400 (787)
Q Consensus 322 ~~~~~i~v~~~~gg~~~~~~~~~l~~~~-dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~ 400 (787)
+..........+++......+..+..+. +|+++|++.|.+.+.........+.+|||||||.+....+...+..++..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~ 157 (201)
T smart00487 78 GPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLL 157 (201)
T ss_pred hccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhC
Confidence 7654445566666666566666666666 999999999999988766677889999999999998766788888888888
Q ss_pred CCCceEEEEeccCcHHHHHHHHHHhCCCeEEEecc
Q 003910 401 RPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGE 435 (787)
Q Consensus 401 ~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~ 435 (787)
++..+++++|||+++.+...+..++.+.+.+....
T Consensus 158 ~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 158 PKNVQLLLLSATPPEEIENLLELFLNDPVFIDVGP 192 (201)
T ss_pred CccceEEEEecCCchhHHHHHHHhcCCCEEEeCCc
Confidence 88899999999999999999999988777766543
No 128
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.83 E-value=1.4e-18 Score=185.70 Aligned_cols=316 Identities=16% Similarity=0.199 Sum_probs=216.9
Q ss_pred CCCCcHHHHHHHHHHH-cCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhh
Q 003910 245 YEKPTSIQCQALPIIL-SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (787)
Q Consensus 245 ~~~ptp~Q~~ai~~il-~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~ 323 (787)
+..+.|+|.+.+...+ .|-.+|+..+||.|||++++..+-.+..+ .| .|||||. .|-..|.+++.+|++
T Consensus 196 vs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraE--------wp-lliVcPA-svrftWa~al~r~lp 265 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAE--------WP-LLIVCPA-SVRFTWAKALNRFLP 265 (689)
T ss_pred HHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhc--------Cc-EEEEecH-HHhHHHHHHHHHhcc
Confidence 3457799999998866 66789999999999999976555444433 44 5889998 566689999999987
Q ss_pred hcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHhhhcCCC
Q 003910 324 SHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPD 403 (787)
Q Consensus 324 ~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~ 403 (787)
..-. +.++.++...... +-....|.|.+++.|..+-. .+.-..+.+||+||+|.+.+.. ....+.++..+...
T Consensus 266 s~~p-i~vv~~~~D~~~~---~~t~~~v~ivSye~ls~l~~--~l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dllk~a 338 (689)
T KOG1000|consen 266 SIHP-IFVVDKSSDPLPD---VCTSNTVAIVSYEQLSLLHD--ILKKEKYRVVIFDESHMLKDSK-TKRTKAATDLLKVA 338 (689)
T ss_pred cccc-eEEEecccCCccc---cccCCeEEEEEHHHHHHHHH--HHhcccceEEEEechhhhhccc-hhhhhhhhhHHHHh
Confidence 5433 4455555444321 22236799999998876432 2334458999999999887653 23355555555556
Q ss_pred ceEEEEeccCc----H---------------HHHHHHHHHhCC-CeEEEeccccc-------------------------
Q 003910 404 RQTLLFSATMP----R---------------KVEKLAREILSD-PVRVTVGEVGM------------------------- 438 (787)
Q Consensus 404 ~q~ll~SAT~~----~---------------~v~~l~~~~l~~-p~~i~v~~~~~------------------------- 438 (787)
.++|++|.|+. . +..+++..||.- .+.+.....+.
T Consensus 339 khvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~ 418 (689)
T KOG1000|consen 339 KHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLK 418 (689)
T ss_pred hheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78899999962 1 223344455432 11111111110
Q ss_pred -ccccceEEEEecCC-------------------------------------CcchHHHHHHhcCC-----cCCCCCEEE
Q 003910 439 -ANEDITQVVHVIPS-------------------------------------DAEKLPWLLEKLPG-----MIDDGDVLV 475 (787)
Q Consensus 439 -~~~~i~q~~~~~~~-------------------------------------~~~k~~~L~~~L~~-----~~~~~kvLV 475 (787)
..+. .+.+.++.. ...|...+.+.|.. -....+.||
T Consensus 419 qLPpK-rr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflV 497 (689)
T KOG1000|consen 419 QLPPK-RREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLV 497 (689)
T ss_pred hCCcc-ceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEE
Confidence 0111 222222210 00122222222221 112348999
Q ss_pred EecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcC-CccE-EEEehhhhccCCCCCccEEEEecCCCCHHH
Q 003910 476 FASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSG-VYHV-LIATDVAARGLDIKSIKSVVNFDIARDMDM 553 (787)
Q Consensus 476 F~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G-~~~V-LVaT~v~~rGlDip~v~~VI~~d~p~s~~~ 553 (787)
||......+.|...+.++++....|.|..+..+|....+.|+.. ++.| +++-.+++.||++...+.||+..++|||..
T Consensus 498 FaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgv 577 (689)
T KOG1000|consen 498 FAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGV 577 (689)
T ss_pred EehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCce
Confidence 99999999999999999999999999999999999999999875 3444 556688899999999999999999999999
Q ss_pred HHHHhhccCCCCCCCcEEEEEEccc
Q 003910 554 HVHRIGRTGRAGDKDGTAYTLVTQK 578 (787)
Q Consensus 554 y~QriGR~gR~G~~~G~~i~l~~~~ 578 (787)
.+|+-.|++|.|++..+.+.++..+
T Consensus 578 LlQAEDRaHRiGQkssV~v~ylvAK 602 (689)
T KOG1000|consen 578 LLQAEDRAHRIGQKSSVFVQYLVAK 602 (689)
T ss_pred EEechhhhhhccccceeeEEEEEec
Confidence 9999999999998877766665554
No 129
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.83 E-value=3.5e-18 Score=198.25 Aligned_cols=316 Identities=21% Similarity=0.306 Sum_probs=212.9
Q ss_pred CCCcHHHHHHHHHHHcC----CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003910 246 EKPTSIQCQALPIILSG----RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (787)
Q Consensus 246 ~~ptp~Q~~ai~~il~g----rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~ 321 (787)
..+.+-|..++..|... ...++.+-||||||-+|+=.+-..+ . .|..+|||+|-..|..|+.+.|+..
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L-~-------~GkqvLvLVPEI~Ltpq~~~rf~~r 268 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVL-A-------QGKQVLVLVPEIALTPQLLARFKAR 268 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHH-H-------cCCEEEEEeccccchHHHHHHHHHH
Confidence 56889999999999866 6799999999999998766554444 3 3778999999999999998888887
Q ss_pred hhhcCceEEEEECCCChHHHHHHH---h-cCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhh--hcC-C--ChHH
Q 003910 322 AKSHGIRVSAVYGGMSKLDQFKEL---K-AGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRM--FDL-G--FEPQ 392 (787)
Q Consensus 322 ~~~~~i~v~~~~gg~~~~~~~~~l---~-~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m--~~~-~--f~~~ 392 (787)
+ +.++.+++++.+..+....+ . ....|||+|-..|. ..+.++.+|||||=|.- ... + +...
T Consensus 269 F---g~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF-------~Pf~~LGLIIvDEEHD~sYKq~~~prYhAR 338 (730)
T COG1198 269 F---GAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEDGPRYHAR 338 (730)
T ss_pred h---CCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc-------CchhhccEEEEeccccccccCCcCCCcCHH
Confidence 5 68888999998876654443 3 35899999943332 35789999999999942 221 1 2222
Q ss_pred HHHHhhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEEeccccc-ccccceEEEEecCCCcch-----HHHHHHhcCC
Q 003910 393 IRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGM-ANEDITQVVHVIPSDAEK-----LPWLLEKLPG 466 (787)
Q Consensus 393 i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~-~~~~i~q~~~~~~~~~~k-----~~~L~~~L~~ 466 (787)
-..++..-..++.+|+-|||+. ++.+.+-.-+....+....... +...-.+.+. +.....+ -..|++.+.+
T Consensus 339 dvA~~Ra~~~~~pvvLgSATPS--LES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiD-mr~e~~~~~~~lS~~Ll~~i~~ 415 (730)
T COG1198 339 DVAVLRAKKENAPVVLGSATPS--LESYANAESGKYKLLRLTNRAGRARLPRVEIID-MRKEPLETGRSLSPALLEAIRK 415 (730)
T ss_pred HHHHHHHHHhCCCEEEecCCCC--HHHHHhhhcCceEEEEccccccccCCCcceEEe-ccccccccCccCCHHHHHHHHH
Confidence 2233333345788999999986 4444443222222222222211 1111111111 1111111 1445555544
Q ss_pred cC-CCCCEEEEecccccH------------------------------------------------------------HH
Q 003910 467 MI-DDGDVLVFASKKTTV------------------------------------------------------------DE 485 (787)
Q Consensus 467 ~~-~~~kvLVF~~s~~~a------------------------------------------------------------~~ 485 (787)
.+ .+.++|||+|.+-.+ ++
T Consensus 416 ~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~Gter 495 (730)
T COG1198 416 TLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTER 495 (730)
T ss_pred HHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHH
Confidence 33 344788888765432 56
Q ss_pred HHHHHHHc--CCceeeccCCCCHH--HHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEEEecCCC------------
Q 003910 486 IESQLAQK--GFKAAALHGDKDQA--SRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIAR------------ 549 (787)
Q Consensus 486 l~~~L~~~--g~~v~~lhg~~~~~--eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~~d~p~------------ 549 (787)
+++.|... +.++..+.++.... .-+..+..|.+|+.+|||.|++++.|+|+|+++.|...|...
T Consensus 496 ieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er 575 (730)
T COG1198 496 IEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASER 575 (730)
T ss_pred HHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHH
Confidence 66666554 56788888887654 356889999999999999999999999999999988776543
Q ss_pred CHHHHHHHhhccCCCCCCCcEEEEEEccccHHHH
Q 003910 550 DMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFA 583 (787)
Q Consensus 550 s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~ 583 (787)
....+.|-.||+||.+ ++|.+++-....|...+
T Consensus 576 ~fqll~QvaGRAgR~~-~~G~VvIQT~~P~hp~i 608 (730)
T COG1198 576 TFQLLMQVAGRAGRAG-KPGEVVIQTYNPDHPAI 608 (730)
T ss_pred HHHHHHHHHhhhccCC-CCCeEEEEeCCCCcHHH
Confidence 3455678999999997 67888876655554433
No 130
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.82 E-value=1.7e-18 Score=204.93 Aligned_cols=299 Identities=17% Similarity=0.166 Sum_probs=180.9
Q ss_pred CcHHHHHHHHHHH----c------CCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHH
Q 003910 248 PTSIQCQALPIIL----S------GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLE 317 (787)
Q Consensus 248 ptp~Q~~ai~~il----~------grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~ 317 (787)
|+++|..|+..++ + .+..|++.+||||||++.+..+ ..++. ....+++|||+|+.+|..|+.+.
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la-~~l~~-----~~~~~~vl~lvdR~~L~~Q~~~~ 312 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAA-RKALE-----LLKNPKVFFVVDRRELDYQLMKE 312 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHH-HHHHh-----hcCCCeEEEEECcHHHHHHHHHH
Confidence 7899999998764 2 2579999999999998855444 33332 13468899999999999999999
Q ss_pred HHHHhhhcCceEEEEECCCChHHHHHHHhc-CCcEEEeCHHHHHHHHHhc--cccccc-eeEEEEechhhhhcCCChHHH
Q 003910 318 TKKFAKSHGIRVSAVYGGMSKLDQFKELKA-GCEIVIATPGRLIDMLKMK--ALTMSR-VTYLVLDEADRMFDLGFEPQI 393 (787)
Q Consensus 318 ~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~-~~dIIV~Tp~~L~~~l~~~--~~~l~~-i~~lViDEah~m~~~~f~~~i 393 (787)
+..+... . +....+.......+.. ...|+|+|.+.|...+... .+.... --+||+||||+.... .+
T Consensus 313 f~~~~~~----~--~~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~----~~ 382 (667)
T TIGR00348 313 FQSLQKD----C--AERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYG----EL 382 (667)
T ss_pred HHhhCCC----C--CcccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccch----HH
Confidence 9988531 1 1111122222222322 3689999999998644321 111111 138999999985432 33
Q ss_pred HHHhhhcCCCceEEEEeccCcHHHHHH-HHHH---hCCCeEEEecccccccccceEEEEe--------cC----------
Q 003910 394 RSIVGQIRPDRQTLLFSATMPRKVEKL-AREI---LSDPVRVTVGEVGMANEDITQVVHV--------IP---------- 451 (787)
Q Consensus 394 ~~il~~~~~~~q~ll~SAT~~~~v~~l-~~~~---l~~p~~i~v~~~~~~~~~i~q~~~~--------~~---------- 451 (787)
...+...-++...++||||+-...... ...+ +.+++.. ..-...........+.+ +.
T Consensus 383 ~~~l~~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~-Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~ 461 (667)
T TIGR00348 383 AKNLKKALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHR-YFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDE 461 (667)
T ss_pred HHHHHhhCCCCcEEEEeCCCcccccccccccccCCCCCeEEE-eeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHH
Confidence 344433335678999999985321110 1111 1121111 00000000000000000 00
Q ss_pred ------C---C-------------------cchHHH----HHHhcCCcC--CCCCEEEEecccccHHHHHHHHHHc----
Q 003910 452 ------S---D-------------------AEKLPW----LLEKLPGMI--DDGDVLVFASKKTTVDEIESQLAQK---- 493 (787)
Q Consensus 452 ------~---~-------------------~~k~~~----L~~~L~~~~--~~~kvLVF~~s~~~a~~l~~~L~~~---- 493 (787)
. + ...+.. +++.+.... ..++.+|||.++..|..+.+.|.+.
T Consensus 462 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~ 541 (667)
T TIGR00348 462 IFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEK 541 (667)
T ss_pred HHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccc
Confidence 0 0 000011 111111111 2379999999999999999988664
Q ss_pred -CCceeeccCCCCHH---------------------HHHHHHHHhhc-CCccEEEEehhhhccCCCCCccEEEEecCCCC
Q 003910 494 -GFKAAALHGDKDQA---------------------SRMEILQKFKS-GVYHVLIATDVAARGLDIKSIKSVVNFDIARD 550 (787)
Q Consensus 494 -g~~v~~lhg~~~~~---------------------eR~~~l~~F~~-G~~~VLVaT~v~~rGlDip~v~~VI~~d~p~s 550 (787)
+...+++++..... ....++++|++ +.++|||+++++..|+|.|.+++++...+-.+
T Consensus 542 ~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~ 621 (667)
T TIGR00348 542 FEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLKY 621 (667)
T ss_pred cCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEeccccc
Confidence 24456666654322 23478899976 67899999999999999999999998886665
Q ss_pred HHHHHHHhhccCCC
Q 003910 551 MDMHVHRIGRTGRA 564 (787)
Q Consensus 551 ~~~y~QriGR~gR~ 564 (787)
. .++|++||+.|.
T Consensus 622 h-~LlQai~R~nR~ 634 (667)
T TIGR00348 622 H-GLLQAIARTNRI 634 (667)
T ss_pred c-HHHHHHHHhccc
Confidence 4 589999999994
No 131
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.82 E-value=1.4e-18 Score=198.24 Aligned_cols=316 Identities=21% Similarity=0.238 Sum_probs=216.3
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhc
Q 003910 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (787)
Q Consensus 246 ~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~ 325 (787)
..|++.|.-+.-.+++|+ |....||.|||++..+|++...+. |..|.||+|+.-||.|-++++..++..+
T Consensus 77 ~r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~--------G~~VhvvT~NdyLA~RDae~m~~ly~~L 146 (764)
T PRK12326 77 LRPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQ--------GRRVHVITVNDYLARRDAEWMGPLYEAL 146 (764)
T ss_pred CCcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHc--------CCCeEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 458899998888888764 779999999999999998877643 5668999999999999999999999999
Q ss_pred CceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHH-HHHHh------ccccccceeEEEEechhhhhc-CC---------
Q 003910 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLI-DMLKM------KALTMSRVTYLVLDEADRMFD-LG--------- 388 (787)
Q Consensus 326 ~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~-~~l~~------~~~~l~~i~~lViDEah~m~~-~~--------- 388 (787)
|++|.++.+..+..+.. ... .|||+.+|..-|- ++|.. .......+.++||||+|.|+- ..
T Consensus 147 GLsvg~i~~~~~~~err-~aY-~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiISg~ 224 (764)
T PRK12326 147 GLTVGWITEESTPEERR-AAY-ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAGS 224 (764)
T ss_pred CCEEEEECCCCCHHHHH-HHH-cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeeeCC
Confidence 99999998887655432 222 5999999987652 22221 222346689999999997631 00
Q ss_pred -----ChHHHHHHhhhcCCC------------------------------------------------------------
Q 003910 389 -----FEPQIRSIVGQIRPD------------------------------------------------------------ 403 (787)
Q Consensus 389 -----f~~~i~~il~~~~~~------------------------------------------------------------ 403 (787)
....+..+...+...
T Consensus 225 ~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~dY 304 (764)
T PRK12326 225 TPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVHY 304 (764)
T ss_pred CcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCcE
Confidence 111111112111110
Q ss_pred ----------------------------------------------------------ceEEEEeccCcHHHHHHHHHHh
Q 003910 404 ----------------------------------------------------------RQTLLFSATMPRKVEKLAREIL 425 (787)
Q Consensus 404 ----------------------------------------------------------~q~ll~SAT~~~~v~~l~~~~l 425 (787)
.++.+||.|.....++ +..++
T Consensus 305 iV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~E-f~~iY 383 (764)
T PRK12326 305 IVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQ-LRQFY 383 (764)
T ss_pred EEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHH-HHHHh
Confidence 1334555554333322 22222
Q ss_pred CCCeEEEecccccccccceEEEEecCCCcchHHHHHHhcCCcC-CCCCEEEEecccccHHHHHHHHHHcCCceeeccCCC
Q 003910 426 SDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDK 504 (787)
Q Consensus 426 ~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~ 504 (787)
+-++.+.....+....+... .+......|+..+++.+.+.. ...+|||.|.+....+.|+..|.+.++++.+|+..-
T Consensus 384 ~l~Vv~IPtnkp~~R~d~~d--~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~ 461 (764)
T PRK12326 384 DLGVSVIPPNKPNIREDEAD--RVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKN 461 (764)
T ss_pred CCcEEECCCCCCceeecCCC--ceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCc
Confidence 32222222111111111111 222234567777777765543 345999999999999999999999999999999865
Q ss_pred CHHHHHHHHHHhhcCC-ccEEEEehhhhccCCCC---------------CccEEEEecCCCCHHHHHHHhhccCCCCCCC
Q 003910 505 DQASRMEILQKFKSGV-YHVLIATDVAARGLDIK---------------SIKSVVNFDIARDMDMHVHRIGRTGRAGDKD 568 (787)
Q Consensus 505 ~~~eR~~~l~~F~~G~-~~VLVaT~v~~rGlDip---------------~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~ 568 (787)
...+- .++. ..|+ -.|.|||++|+||.||. +-=|||-...+.|..--.|-.||+||.| .+
T Consensus 462 ~~~EA-~IIa--~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQG-Dp 537 (764)
T PRK12326 462 DAEEA-RIIA--EAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQG-DP 537 (764)
T ss_pred hHhHH-HHHH--hcCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCC-CC
Confidence 44332 2222 2333 36999999999999997 2348999999999999999999999999 68
Q ss_pred cEEEEEEccccH
Q 003910 569 GTAYTLVTQKEA 580 (787)
Q Consensus 569 G~~i~l~~~~d~ 580 (787)
|.+..|++-+|.
T Consensus 538 Gss~f~lSleDd 549 (764)
T PRK12326 538 GSSVFFVSLEDD 549 (764)
T ss_pred CceeEEEEcchh
Confidence 999999887664
No 132
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.81 E-value=7.4e-19 Score=199.77 Aligned_cols=297 Identities=20% Similarity=0.241 Sum_probs=193.5
Q ss_pred CCCcHHHHHHHHHHH----cC-CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHH
Q 003910 246 EKPTSIQCQALPIIL----SG-RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKK 320 (787)
Q Consensus 246 ~~ptp~Q~~ai~~il----~g-rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~ 320 (787)
..|+++|..||..+. +| +.+|+++.||+|||.+ .+.++..|++. ....++|+|+-++.|+.|.+..+..
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrT-Aiaii~rL~r~-----~~~KRVLFLaDR~~Lv~QA~~af~~ 237 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRT-AIAIIDRLIKS-----GWVKRVLFLADRNALVDQAYGAFED 237 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCccee-HHHHHHHHHhc-----chhheeeEEechHHHHHHHHHHHHH
Confidence 458999999998765 44 3599999999999987 45566666654 3456799999999999999999999
Q ss_pred HhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhc-----cccccceeEEEEechhhhhcCCChHHHHH
Q 003910 321 FAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK-----ALTMSRVTYLVLDEADRMFDLGFEPQIRS 395 (787)
Q Consensus 321 ~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~-----~~~l~~i~~lViDEah~m~~~~f~~~i~~ 395 (787)
+.+... . +.+..+.... ..++|.|+|+..|...+... .+....+++||||||||-. ......
T Consensus 238 ~~P~~~-~-~n~i~~~~~~-------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi----~~~~~~ 304 (875)
T COG4096 238 FLPFGT-K-MNKIEDKKGD-------TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI----YSEWSS 304 (875)
T ss_pred hCCCcc-c-eeeeecccCC-------cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH----HhhhHH
Confidence 877422 2 2222211111 14899999999999988654 2334568999999999843 334446
Q ss_pred HhhhcCCCceEEEEeccCcHHHHHHHHHHh-CCCeEEE------------------ec----ccccccccc----e----
Q 003910 396 IVGQIRPDRQTLLFSATMPRKVEKLAREIL-SDPVRVT------------------VG----EVGMANEDI----T---- 444 (787)
Q Consensus 396 il~~~~~~~q~ll~SAT~~~~v~~l~~~~l-~~p~~i~------------------v~----~~~~~~~~i----~---- 444 (787)
|+.++..-+ ++++||+...+..---.|+ ..|+..+ +. ..+...... .
T Consensus 305 I~dYFdA~~--~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~ 382 (875)
T COG4096 305 ILDYFDAAT--QGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGE 382 (875)
T ss_pred HHHHHHHHH--HhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhcc
Confidence 666654333 3449998664433333333 3332211 10 000000000 0
Q ss_pred ------EEEE--------ecCCCcchH-HHHHHhcCCc--C-CCCCEEEEecccccHHHHHHHHHHc-----CCceeecc
Q 003910 445 ------QVVH--------VIPSDAEKL-PWLLEKLPGM--I-DDGDVLVFASKKTTVDEIESQLAQK-----GFKAAALH 501 (787)
Q Consensus 445 ------q~~~--------~~~~~~~k~-~~L~~~L~~~--~-~~~kvLVF~~s~~~a~~l~~~L~~~-----g~~v~~lh 501 (787)
+.+. +++...... ..|.+.+... . .-+|+||||.+..+|+.+...|... +--+..|.
T Consensus 383 ~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT 462 (875)
T COG4096 383 AIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKIT 462 (875)
T ss_pred ccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEe
Confidence 0000 000000111 1223333331 1 1358999999999999999999875 23467777
Q ss_pred CCCCHHHHHHHHHHhhc--CCccEEEEehhhhccCCCCCccEEEEecCCCCHHHHHHHhhccCCCC
Q 003910 502 GDKDQASRMEILQKFKS--GVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAG 565 (787)
Q Consensus 502 g~~~~~eR~~~l~~F~~--G~~~VLVaT~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G 565 (787)
|+-.+.+ ..++.|.. .-.+|.|+.+++..|+|+|.|..+|++-.-.|..-|.|++||.-|.-
T Consensus 463 ~d~~~~q--~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~ 526 (875)
T COG4096 463 GDAEQAQ--ALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLC 526 (875)
T ss_pred ccchhhH--HHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccC
Confidence 7766544 34666654 33567888899999999999999999999999999999999999974
No 133
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.79 E-value=1.7e-17 Score=179.54 Aligned_cols=165 Identities=24% Similarity=0.339 Sum_probs=126.3
Q ss_pred CceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcchHHHHHHhcCCc-CCCCCEEEEecccc
Q 003910 403 DRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGM-IDDGDVLVFASKKT 481 (787)
Q Consensus 403 ~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~-~~~~kvLVF~~s~~ 481 (787)
..|+|++|||+.+.-.+.. -++.+.-.+...+..-+.|. +- ........|+..+... ..+.++||-+-|++
T Consensus 386 ~~q~i~VSATPg~~E~e~s---~~~vveQiIRPTGLlDP~ie----vR-p~~~QvdDL~~EI~~r~~~~eRvLVTtLTKk 457 (663)
T COG0556 386 IPQTIYVSATPGDYELEQS---GGNVVEQIIRPTGLLDPEIE----VR-PTKGQVDDLLSEIRKRVAKNERVLVTTLTKK 457 (663)
T ss_pred cCCEEEEECCCChHHHHhc---cCceeEEeecCCCCCCCcee----ee-cCCCcHHHHHHHHHHHHhcCCeEEEEeehHH
Confidence 3699999999865421111 11222333333333322222 11 2234556666655543 34569999999999
Q ss_pred cHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEEEecCC-----CCHHHHHH
Q 003910 482 TVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIA-----RDMDMHVH 556 (787)
Q Consensus 482 ~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~~d~p-----~s~~~y~Q 556 (787)
+++.|.+||...|+++..+|++.+.-+|.+++..++.|.++|||.-+.+-+|||+|.|..|.++|.. .+-.+.+|
T Consensus 458 mAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQ 537 (663)
T COG0556 458 MAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQ 537 (663)
T ss_pred HHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999865 57888999
Q ss_pred HhhccCCCCCCCcEEEEEEcc
Q 003910 557 RIGRTGRAGDKDGTAYTLVTQ 577 (787)
Q Consensus 557 riGR~gR~G~~~G~~i~l~~~ 577 (787)
-|||+.|.- .|.++++...
T Consensus 538 tIGRAARN~--~GkvIlYAD~ 556 (663)
T COG0556 538 TIGRAARNV--NGKVILYADK 556 (663)
T ss_pred HHHHHhhcc--CCeEEEEchh
Confidence 999999974 6998877644
No 134
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.78 E-value=2.2e-18 Score=183.73 Aligned_cols=328 Identities=19% Similarity=0.265 Sum_probs=212.6
Q ss_pred cCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEE
Q 003910 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI 303 (787)
Q Consensus 224 i~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLI 303 (787)
+..|...++++...+.|++..-..-+.++...+..+.+++-+++.++||||||.+ +|-+..-...+. ...+..
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQ--iPq~~~~~~~~~-----~~~v~C 96 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQ--IPQFVLEYELSH-----LTGVAC 96 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCcccc--CcHHHHHHHHhh-----ccceee
Confidence 6778888899999998887755555666777778888889999999999999987 443332221111 134667
Q ss_pred EcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhh
Q 003910 304 CAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR 383 (787)
Q Consensus 304 l~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~ 383 (787)
..|.|..|.+++.. .+...++....-+|..-..+.+.. ...-+-.||.++|+....... .|.++.+||+||||.
T Consensus 97 TQprrvaamsva~R---VadEMDv~lG~EVGysIrfEdC~~--~~T~Lky~tDgmLlrEams~p-~l~~y~viiLDeahE 170 (699)
T KOG0925|consen 97 TQPRRVAAMSVAQR---VADEMDVTLGEEVGYSIRFEDCTS--PNTLLKYCTDGMLLREAMSDP-LLGRYGVIILDEAHE 170 (699)
T ss_pred cCchHHHHHHHHHH---HHHHhccccchhccccccccccCC--hhHHHHHhcchHHHHHHhhCc-ccccccEEEechhhh
Confidence 78999999888544 444445555444444333332110 001133578888877665444 488999999999994
Q ss_pred -hhcCCChHHHHHHhhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcchHHHHHH
Q 003910 384 -MFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLE 462 (787)
Q Consensus 384 -m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L~~ 462 (787)
-+..+..-.+.+-+..-+++.++|++|||+... -++.|+.++-.+.+.... .+. .++.-....+.+...+.
T Consensus 171 RtlATDiLmGllk~v~~~rpdLk~vvmSatl~a~---Kfq~yf~n~Pll~vpg~~----PvE-i~Yt~e~erDylEaair 242 (699)
T KOG0925|consen 171 RTLATDILMGLLKEVVRNRPDLKLVVMSATLDAE---KFQRYFGNAPLLAVPGTH----PVE-IFYTPEPERDYLEAAIR 242 (699)
T ss_pred hhHHHHHHHHHHHHHHhhCCCceEEEeecccchH---HHHHHhCCCCeeecCCCC----ceE-EEecCCCChhHHHHHHH
Confidence 222111111222222235799999999998533 356677776666654311 111 12222222233333222
Q ss_pred h---cCCcCCCCCEEEEecccccHHHHHHHHHHc---------CCceeeccCCCCHHHHHHHHHHhhc---C--CccEEE
Q 003910 463 K---LPGMIDDGDVLVFASKKTTVDEIESQLAQK---------GFKAAALHGDKDQASRMEILQKFKS---G--VYHVLI 525 (787)
Q Consensus 463 ~---L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~---------g~~v~~lhg~~~~~eR~~~l~~F~~---G--~~~VLV 525 (787)
. +......|.+|||....++.+..++.+... .+.|..|| +.+...+++-... | ..+|+|
T Consensus 243 tV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVv 318 (699)
T KOG0925|consen 243 TVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVV 318 (699)
T ss_pred HHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEE
Confidence 2 222334789999999999999988888753 35688888 4444555444322 2 357999
Q ss_pred EehhhhccCCCCCccEEEEecC------------------CCCHHHHHHHhhccCCCCCCCcEEEEEEccc
Q 003910 526 ATDVAARGLDIKSIKSVVNFDI------------------ARDMDMHVHRIGRTGRAGDKDGTAYTLVTQK 578 (787)
Q Consensus 526 aT~v~~rGlDip~v~~VI~~d~------------------p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~ 578 (787)
+|.+++..+.|++|.+||.-++ |-+-..-.||.||+||. ++|.|+.|++++
T Consensus 319 stniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt--~pGkcfrLYte~ 387 (699)
T KOG0925|consen 319 STNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT--RPGKCFRLYTEE 387 (699)
T ss_pred EecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC--CCCceEEeecHH
Confidence 9999999999999999996432 44666778999999997 589999999865
No 135
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.78 E-value=6.6e-18 Score=197.13 Aligned_cols=317 Identities=18% Similarity=0.208 Sum_probs=211.1
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhc
Q 003910 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (787)
Q Consensus 246 ~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~ 325 (787)
..|+++|.-+- +.-.+.-|....||.|||+++.+|++...+ .|..|.||+||.-||.|-++++..++..+
T Consensus 81 m~~ydVQliGg--~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al--------~G~~VhvvT~ndyLA~RD~e~m~~l~~~l 150 (913)
T PRK13103 81 MRHFDVQLIGG--MTLHEGKIAEMRTGEGKTLVGTLAVYLNAL--------SGKGVHVVTVNDYLARRDANWMRPLYEFL 150 (913)
T ss_pred CCcchhHHHhh--hHhccCccccccCCCCChHHHHHHHHHHHH--------cCCCEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 34666666554 444456788999999999999999987663 36668999999999999999999999999
Q ss_pred CceEEEEECCCChHHHHHHHhcCCcEEEeCHHHH-HHHHHhc------cccccceeEEEEechhhhh-cCC---------
Q 003910 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRL-IDMLKMK------ALTMSRVTYLVLDEADRMF-DLG--------- 388 (787)
Q Consensus 326 ~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L-~~~l~~~------~~~l~~i~~lViDEah~m~-~~~--------- 388 (787)
|++|.++.+..+..+....+ .++|+++|..-| .++|..+ ......+.|+||||+|.|+ |..
T Consensus 151 Gl~v~~i~~~~~~~err~~Y--~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIISg~ 228 (913)
T PRK13103 151 GLSVGIVTPFQPPEEKRAAY--AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIISGQ 228 (913)
T ss_pred CCEEEEECCCCCHHHHHHHh--cCCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceeecCC
Confidence 99999998877655433322 399999999886 2333221 2234788999999999874 110
Q ss_pred ------ChHHHHHHhhhcCC--------------------C---------------------------------------
Q 003910 389 ------FEPQIRSIVGQIRP--------------------D--------------------------------------- 403 (787)
Q Consensus 389 ------f~~~i~~il~~~~~--------------------~--------------------------------------- 403 (787)
....+..++..+.. .
T Consensus 229 ~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~~~ 308 (913)
T PRK13103 229 AEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGLLT 308 (913)
T ss_pred CccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHHHH
Confidence 00111111111100 0
Q ss_pred ----------------------------------------------------------------------------ceEE
Q 003910 404 ----------------------------------------------------------------------------RQTL 407 (787)
Q Consensus 404 ----------------------------------------------------------------------------~q~l 407 (787)
.++.
T Consensus 309 ~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kLs 388 (913)
T PRK13103 309 HVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNKLS 388 (913)
T ss_pred HHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcchhc
Confidence 1122
Q ss_pred EEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcchHHHHHHhcCCcCC-CCCEEEEecccccHHHH
Q 003910 408 LFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMID-DGDVLVFASKKTTVDEI 486 (787)
Q Consensus 408 l~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~-~~kvLVF~~s~~~a~~l 486 (787)
+||.|......+ +..+++-.+.+.....+....+... .+......|+..+++.+..... ..+|||-+.+++..+.|
T Consensus 389 GMTGTa~te~~E-f~~iY~l~Vv~IPTnkP~~R~D~~d--~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~l 465 (913)
T PRK13103 389 GMTGTADTEAFE-FRQIYGLDVVVIPPNKPLARKDFND--LVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHM 465 (913)
T ss_pred cCCCCCHHHHHH-HHHHhCCCEEECCCCCCcccccCCC--eEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHH
Confidence 333333222111 2222222222222222211111111 1223445788888777765544 45999999999999999
Q ss_pred HHHHHHcCCceeeccCCCCHHHHHHHHHHhhcC-CccEEEEehhhhccCCCC----------------------------
Q 003910 487 ESQLAQKGFKAAALHGDKDQASRMEILQKFKSG-VYHVLIATDVAARGLDIK---------------------------- 537 (787)
Q Consensus 487 ~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G-~~~VLVaT~v~~rGlDip---------------------------- 537 (787)
+..|.+.+++..+|+......+-.-+- ..| .-.|.|||++|+||.||.
T Consensus 466 s~~L~~~gi~h~VLNAk~~~~EA~IIa---~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~ 542 (913)
T PRK13103 466 SNLLKKEGIEHKVLNAKYHEKEAEIIA---QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQ 542 (913)
T ss_pred HHHHHHcCCcHHHhccccchhHHHHHH---cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHH
Confidence 999999999999888764433322222 344 346999999999999995
Q ss_pred ---------CccEEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEccccHH
Q 003910 538 ---------SIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEAR 581 (787)
Q Consensus 538 ---------~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~ 581 (787)
+-=|||--..+.|..--.|-.||+||.| .+|.+.+|++-+|.-
T Consensus 543 ~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQG-DPGsS~f~lSlED~L 594 (913)
T PRK13103 543 KRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQG-DPGSSRFYLSLEDSL 594 (913)
T ss_pred hHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCC-CCCceEEEEEcCcHH
Confidence 2347898889999999999999999999 689999999887653
No 136
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.77 E-value=1e-16 Score=192.89 Aligned_cols=324 Identities=19% Similarity=0.249 Sum_probs=202.1
Q ss_pred CCcHHHHHHHHHHH----cCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHH-HHHHHHH
Q 003910 247 KPTSIQCQALPIIL----SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQI-YLETKKF 321 (787)
Q Consensus 247 ~ptp~Q~~ai~~il----~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi-~~~~~~~ 321 (787)
++++-|.+....+. .+..+++.|+||+|||++|++|++.+. .+.++||++||++|+.|+ ...+..+
T Consensus 245 e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~---------~~~~vvI~t~T~~Lq~Ql~~~~i~~l 315 (820)
T PRK07246 245 EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS---------DQRQIIVSVPTKILQDQIMAEEVKAI 315 (820)
T ss_pred ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc---------CCCcEEEEeCcHHHHHHHHHHHHHHH
Confidence 58999999665544 567899999999999999999988764 246799999999999999 4778888
Q ss_pred hhhcCceEEEEECCCChH-----HH------------------------------------------HHHH---------
Q 003910 322 AKSHGIRVSAVYGGMSKL-----DQ------------------------------------------FKEL--------- 345 (787)
Q Consensus 322 ~~~~~i~v~~~~gg~~~~-----~~------------------------------------------~~~l--------- 345 (787)
.+..++++.++.|+...- .+ +..+
T Consensus 316 ~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~~ 395 (820)
T PRK07246 316 QEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQS 395 (820)
T ss_pred HHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCCC
Confidence 777788888777764310 00 0000
Q ss_pred ---------------hcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCC-----Ch-------H-------
Q 003910 346 ---------------KAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG-----FE-------P------- 391 (787)
Q Consensus 346 ---------------~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~-----f~-------~------- 391 (787)
...+||||+.+..|+..+.... .+...++|||||||++.+.. .. .
T Consensus 396 cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 474 (820)
T PRK07246 396 SLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQKALS 474 (820)
T ss_pred CCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHHHHHH
Confidence 1137999999998888664433 36789999999999874310 00 0
Q ss_pred -------------------------------------------HH-----------HHHhh--h----c-----------
Q 003910 392 -------------------------------------------QI-----------RSIVG--Q----I----------- 400 (787)
Q Consensus 392 -------------------------------------------~i-----------~~il~--~----~----------- 400 (787)
.+ ..++. . +
T Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~~~~~ 554 (820)
T PRK07246 475 GPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSEKRVT 554 (820)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCCccee
Confidence 00 00000 0 0
Q ss_pred ----------------CCCceEEEEeccCc--HHHHHHHHHHhCCC--eEEEecccccccccceEEEEec----CCC---
Q 003910 401 ----------------RPDRQTLLFSATMP--RKVEKLAREILSDP--VRVTVGEVGMANEDITQVVHVI----PSD--- 453 (787)
Q Consensus 401 ----------------~~~~q~ll~SAT~~--~~v~~l~~~~l~~p--~~i~v~~~~~~~~~i~q~~~~~----~~~--- 453 (787)
+....+|++|||++ +.. .+ ...++-. ....+ .... . .+...++ +..
T Consensus 555 ~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f-~~-~~~lGl~~~~~~~~---~~~~-~-~~~~~~i~~~~p~~~~~ 627 (820)
T PRK07246 555 YLNSASKAFTHFSQLLPETCKTYFVSATLQISPRV-SL-ADLLGFEEYLFHKI---EKDK-K-QDQLVVVDQDMPLVTET 627 (820)
T ss_pred EEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCC-cH-HHHcCCCccceecC---CCCh-H-HccEEEeCCCCCCCCCC
Confidence 00135778888874 222 23 2222311 11111 1011 1 1222222 111
Q ss_pred --cchHHHHHHhcCCc-CCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhh
Q 003910 454 --AEKLPWLLEKLPGM-IDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVA 530 (787)
Q Consensus 454 --~~k~~~L~~~L~~~-~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~ 530 (787)
..-...+.+.+... ...|++||++++++.++.++..|....+.+ ...|... .+..++++|+.+...||++|..+
T Consensus 628 ~~~~~~~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sF 704 (820)
T PRK07246 628 SDEVYAEEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSF 704 (820)
T ss_pred ChHHHHHHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchh
Confidence 01111232222111 246899999999999999999997665555 5555322 25668999999888999999999
Q ss_pred hccCCCCC--ccEEEEecCCC----C--------------------------HHHHHHHhhccCCCCCCCcEEEEEEccc
Q 003910 531 ARGLDIKS--IKSVVNFDIAR----D--------------------------MDMHVHRIGRTGRAGDKDGTAYTLVTQK 578 (787)
Q Consensus 531 ~rGlDip~--v~~VI~~d~p~----s--------------------------~~~y~QriGR~gR~G~~~G~~i~l~~~~ 578 (787)
.+|||+|+ ...||+..+|. + +..+.|.+||.-|.-...|+++ ++.+.
T Consensus 705 wEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~-ilD~R 783 (820)
T PRK07246 705 WEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVL-ILDRR 783 (820)
T ss_pred hCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEE-EECCc
Confidence 99999974 56677766552 2 1223599999999874456544 44332
Q ss_pred --cHHHHHHHHHHHH
Q 003910 579 --EARFAGELVNSLI 591 (787)
Q Consensus 579 --d~~~~~~l~~~l~ 591 (787)
...+-..+++.|-
T Consensus 784 ~~~k~Yg~~~l~sLP 798 (820)
T PRK07246 784 ILTKSYGKQILASLA 798 (820)
T ss_pred ccccHHHHHHHHhCC
Confidence 3445556666553
No 137
>COG4889 Predicted helicase [General function prediction only]
Probab=99.76 E-value=6.6e-18 Score=189.78 Aligned_cols=359 Identities=19% Similarity=0.211 Sum_probs=215.3
Q ss_pred CCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC----CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCE
Q 003910 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSG----RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPI 300 (787)
Q Consensus 225 ~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~g----rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~ 300 (787)
..|+.+.. .++..+|.-+.-.+|+|+|++|+...+.+ ...=+++.+|+|||.+.| -+...+. ..+
T Consensus 140 IDW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsL-kisEala---------~~~ 208 (1518)
T COG4889 140 IDWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSL-KISEALA---------AAR 208 (1518)
T ss_pred CChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHH-HHHHHHh---------hhh
Confidence 45555443 45666666666789999999999999866 234556678999998844 3444442 256
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHH--------------------HHHHH-----hcCCcEEEeC
Q 003910 301 GVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD--------------------QFKEL-----KAGCEIVIAT 355 (787)
Q Consensus 301 vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~--------------------~~~~l-----~~~~dIIV~T 355 (787)
+|+|+|+..|..|..+++..-.. ..++...++....... ....+ ..+--||++|
T Consensus 209 iL~LvPSIsLLsQTlrew~~~~~-l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsT 287 (1518)
T COG4889 209 ILFLVPSISLLSQTLREWTAQKE-LDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFST 287 (1518)
T ss_pred eEeecchHHHHHHHHHHHhhccC-ccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEc
Confidence 89999999999998665554322 3556555555422110 11111 2356799999
Q ss_pred HHHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHhhhcC-----CCceEEEEeccCcH---HH----------
Q 003910 356 PGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIR-----PDRQTLLFSATMPR---KV---------- 417 (787)
Q Consensus 356 p~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~~-----~~~q~ll~SAT~~~---~v---------- 417 (787)
|+.|..+-+.....+..+++||+|||||-........-...+..+. +..+.+.|+||+.- .+
T Consensus 288 YQSl~~i~eAQe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~ 367 (1518)
T COG4889 288 YQSLPRIKEAQEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAE 367 (1518)
T ss_pred ccchHHHHHHHHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccce
Confidence 9999988877778899999999999998543211111111111111 12345788888621 11
Q ss_pred --------------------HHHHHHHhCCCeEEEecccccccccceEEEEecCC------CcchHHHHHHhcCC-c---
Q 003910 418 --------------------EKLAREILSDPVRVTVGEVGMANEDITQVVHVIPS------DAEKLPWLLEKLPG-M--- 467 (787)
Q Consensus 418 --------------------~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~------~~~k~~~L~~~L~~-~--- 467 (787)
+...+.++.+...+...-.........|....-+. ...|+.-...-|.+ .
T Consensus 368 l~SMDDe~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~ 447 (1518)
T COG4889 368 LSSMDDELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGED 447 (1518)
T ss_pred eeccchhhhhchhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhcccc
Confidence 11123333333222221111111111111111111 11111111111111 0
Q ss_pred ------CC----CCCEEEEecccccHHHHHHHHHH-------------c--CCceeeccCCCCHHHHHHHHH---HhhcC
Q 003910 468 ------ID----DGDVLVFASKKTTVDEIESQLAQ-------------K--GFKAAALHGDKDQASRMEILQ---KFKSG 519 (787)
Q Consensus 468 ------~~----~~kvLVF~~s~~~a~~l~~~L~~-------------~--g~~v~~lhg~~~~~eR~~~l~---~F~~G 519 (787)
.. -.+.|-||.+.+....+++.+.. . .+.+..+.|.|...+|...+. .|...
T Consensus 448 n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~n 527 (1518)
T COG4889 448 NDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPN 527 (1518)
T ss_pred ccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcc
Confidence 00 12578899988887777666543 1 344666778999988855444 34557
Q ss_pred CccEEEEehhhhccCCCCCccEEEEecCCCCHHHHHHHhhccCCCC--CCCcEEEEEE-------------ccccHHHHH
Q 003910 520 VYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAG--DKDGTAYTLV-------------TQKEARFAG 584 (787)
Q Consensus 520 ~~~VLVaT~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G--~~~G~~i~l~-------------~~~d~~~~~ 584 (787)
.++||--..++++|+|+|.++.||+|++-.++.+.+|.+||+.|-. .+.|..++=+ .....+.+.
T Consensus 528 eckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPIalpegi~p~~~l~~n~nFk~VW 607 (1518)
T COG4889 528 ECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPIALPEGIKPLDELVNNTNFKNVW 607 (1518)
T ss_pred hheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEeccCCCCCchHHHhcCccHHHHH
Confidence 8899998999999999999999999999999999999999999964 2334333322 122445566
Q ss_pred HHHHHHHHcCC
Q 003910 585 ELVNSLIAAGQ 595 (787)
Q Consensus 585 ~l~~~l~~~~~ 595 (787)
.+++.|..+..
T Consensus 608 qVlnALRShD~ 618 (1518)
T COG4889 608 QVLKALRSHDE 618 (1518)
T ss_pred HHHHHHHhcCH
Confidence 77888866554
No 138
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.76 E-value=7.8e-18 Score=186.45 Aligned_cols=110 Identities=15% Similarity=0.292 Sum_probs=93.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhc--CCcc-EEEEehhhhccCCCCCccEEEEe
Q 003910 469 DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKS--GVYH-VLIATDVAARGLDIKSIKSVVNF 545 (787)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~--G~~~-VLVaT~v~~rGlDip~v~~VI~~ 545 (787)
...+++|..+=...+..+...|.+.|+.+..+||.....+|+.+++.|.. |..+ .||+-.+.+.|||+-+.+|+|.+
T Consensus 745 skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilv 824 (901)
T KOG4439|consen 745 SKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILV 824 (901)
T ss_pred ccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEE
Confidence 34578888877888889999999999999999999999999999999964 4344 45667888899999999999999
Q ss_pred cCCCCHHHHHHHhhccCCCCCCCcEEE-EEEccc
Q 003910 546 DIARDMDMHVHRIGRTGRAGDKDGTAY-TLVTQK 578 (787)
Q Consensus 546 d~p~s~~~y~QriGR~gR~G~~~G~~i-~l~~~~ 578 (787)
|+-|||.--.|++.|..|.|+++-+.| .|++..
T Consensus 825 DlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~g 858 (901)
T KOG4439|consen 825 DLHWNPALEQQACDRIYRMGQKKDVFIHRLMCKG 858 (901)
T ss_pred ecccCHHHHHHHHHHHHHhcccCceEEEEEEecC
Confidence 999999999999999999997666555 455543
No 139
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.75 E-value=3e-17 Score=185.65 Aligned_cols=121 Identities=25% Similarity=0.324 Sum_probs=98.1
Q ss_pred hHHHHHHhcCCcCC-CCCEEEEecccccHHHHHHHHHHc----------------------CCceeeccCCCCHHHHHHH
Q 003910 456 KLPWLLEKLPGMID-DGDVLVFASKKTTVDEIESQLAQK----------------------GFKAAALHGDKDQASRMEI 512 (787)
Q Consensus 456 k~~~L~~~L~~~~~-~~kvLVF~~s~~~a~~l~~~L~~~----------------------g~~v~~lhg~~~~~eR~~~ 512 (787)
|+..|+++|..... ..++|||.++...++.|..+|... |.....|.|.....+|...
T Consensus 1127 KmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~ 1206 (1567)
T KOG1015|consen 1127 KMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKW 1206 (1567)
T ss_pred ceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHH
Confidence 33344444443322 348999999999999999999752 5568899999999999999
Q ss_pred HHHhhcC----CccEEEEehhhhccCCCCCccEEEEecCCCCHHHHHHHhhccCCCCCCCc-EEEEEEc
Q 003910 513 LQKFKSG----VYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDG-TAYTLVT 576 (787)
Q Consensus 513 l~~F~~G----~~~VLVaT~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G-~~i~l~~ 576 (787)
...|+.- ...+||+|.+.+-|+|+-.++.||+||..|||.--+|.|=|+.|.|+.+. .+|.|+.
T Consensus 1207 ~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiA 1275 (1567)
T KOG1015|consen 1207 AEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIA 1275 (1567)
T ss_pred HHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhh
Confidence 9999873 23489999999999999999999999999999999999999999995444 4555554
No 140
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.74 E-value=2.7e-18 Score=183.44 Aligned_cols=311 Identities=17% Similarity=0.219 Sum_probs=204.4
Q ss_pred CCCcHHHHHHHHHHHcC---CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHh
Q 003910 246 EKPTSIQCQALPIILSG---RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (787)
Q Consensus 246 ~~ptp~Q~~ai~~il~g---rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~ 322 (787)
..++|||..++..++-+ |..||+.|+|+|||++-+.++ ..+ ...+||||.+-.-+.||..+++.|+
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa-~ti----------kK~clvLcts~VSVeQWkqQfk~ws 369 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAA-CTI----------KKSCLVLCTSAVSVEQWKQQFKQWS 369 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeee-eee----------cccEEEEecCccCHHHHHHHHHhhc
Confidence 67899999999999833 689999999999998744433 222 3459999999999999999999998
Q ss_pred hhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHh--------ccccccceeEEEEechhhhhcCCChHHHH
Q 003910 323 KSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM--------KALTMSRVTYLVLDEADRMFDLGFEPQIR 394 (787)
Q Consensus 323 ~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~--------~~~~l~~i~~lViDEah~m~~~~f~~~i~ 394 (787)
...+-.++.++...... ...++.|+|+||.++..--++ ..+.-..|.++|+||+|.+-..-|...+.
T Consensus 370 ti~d~~i~rFTsd~Ke~-----~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVls 444 (776)
T KOG1123|consen 370 TIQDDQICRFTSDAKER-----FPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLS 444 (776)
T ss_pred ccCccceEEeecccccc-----CCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHH
Confidence 76666666666554332 234789999999887542211 12234679999999999877665665555
Q ss_pred HHhhhcCCCceEEEEeccCcHHHHHHHH-HHhCCCeEEEecccccc----cccc------------------------eE
Q 003910 395 SIVGQIRPDRQTLLFSATMPRKVEKLAR-EILSDPVRVTVGEVGMA----NEDI------------------------TQ 445 (787)
Q Consensus 395 ~il~~~~~~~q~ll~SAT~~~~v~~l~~-~~l~~p~~i~v~~~~~~----~~~i------------------------~q 445 (787)
.+-.++ -|+++||+-++-.++.. .|+-.|......-.... ...+ ..
T Consensus 445 iv~aHc-----KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~ 519 (776)
T KOG1123|consen 445 IVQAHC-----KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRM 519 (776)
T ss_pred HHHHHh-----hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhh
Confidence 544444 38999998554222210 11111111100000000 0001 11
Q ss_pred EEEecC-CCcchHHHHHHhcCCcCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcC-CccE
Q 003910 446 VVHVIP-SDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSG-VYHV 523 (787)
Q Consensus 446 ~~~~~~-~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G-~~~V 523 (787)
.+.++. ....-...|+..-.+ .+.++|||....-.+...+-.|.+ -.|+|..+|.+|.++++.|+.. .++.
T Consensus 520 lLyvMNP~KFraCqfLI~~HE~--RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~ILqnFq~n~~vNT 592 (776)
T KOG1123|consen 520 LLYVMNPNKFRACQFLIKFHER--RGDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNERMKILQNFQTNPKVNT 592 (776)
T ss_pred eeeecCcchhHHHHHHHHHHHh--cCCeEEEEeccHHHHHHHHHHcCC-----ceEECCCchhHHHHHHHhcccCCccce
Confidence 112221 111112233333222 456999999887666666555533 3589999999999999999864 5788
Q ss_pred EEEehhhhccCCCCCccEEEEecCCC-CHHHHHHHhhccCCCCC-----CCcEEEEEEccccHHHHH
Q 003910 524 LIATDVAARGLDIKSIKSVVNFDIAR-DMDMHVHRIGRTGRAGD-----KDGTAYTLVTQKEARFAG 584 (787)
Q Consensus 524 LVaT~v~~rGlDip~v~~VI~~d~p~-s~~~y~QriGR~gR~G~-----~~G~~i~l~~~~d~~~~~ 584 (787)
+.-..++...+|+|.++++|....-. +-..-.||+||..|+-. -....|+|++..-..++.
T Consensus 593 IFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~Y 659 (776)
T KOG1123|consen 593 IFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMYY 659 (776)
T ss_pred EEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHHh
Confidence 88899999999999999999876543 56677899999999741 224577788776554444
No 141
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.73 E-value=4.9e-16 Score=179.73 Aligned_cols=315 Identities=19% Similarity=0.258 Sum_probs=211.0
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcC
Q 003910 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (787)
Q Consensus 247 ~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~ 326 (787)
.|+++|.-+.-.+..| -|....||-|||+++.+|+....+. |..|-||+..--||.-=.+++..+...+|
T Consensus 78 r~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL~--------GkgVhVVTvNdYLA~RDae~mg~vy~fLG 147 (925)
T PRK12903 78 RPYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNALT--------GKGVIVSTVNEYLAERDAEEMGKVFNFLG 147 (925)
T ss_pred CcCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHhc--------CCceEEEecchhhhhhhHHHHHHHHHHhC
Confidence 5788888777666655 5799999999999999998765433 45577888888999988899999999999
Q ss_pred ceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHH-HHHHh------ccccccceeEEEEechhhhh-cCC----------
Q 003910 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLI-DMLKM------KALTMSRVTYLVLDEADRMF-DLG---------- 388 (787)
Q Consensus 327 i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~-~~l~~------~~~~l~~i~~lViDEah~m~-~~~---------- 388 (787)
+.|.++..+....+... .-.|||+.+|..-|- ++|.. .......+.|.||||+|.|+ |..
T Consensus 148 LsvG~i~~~~~~~~rr~--aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIISg~~ 225 (925)
T PRK12903 148 LSVGINKANMDPNLKRE--AYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGGQ 225 (925)
T ss_pred CceeeeCCCCChHHHHH--hccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccccCCC
Confidence 99999988766554322 235999999988763 33332 12235678999999999763 110
Q ss_pred -----ChHHHHHHhhhcCC-------C-----------------------------------------------------
Q 003910 389 -----FEPQIRSIVGQIRP-------D----------------------------------------------------- 403 (787)
Q Consensus 389 -----f~~~i~~il~~~~~-------~----------------------------------------------------- 403 (787)
+...+..++..+.. .
T Consensus 226 ~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dYiV 305 (925)
T PRK12903 226 SNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEYIV 305 (925)
T ss_pred ccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCceEE
Confidence 11111122221111 0
Q ss_pred --------------------------------------------------------ceEEEEeccCcHHHHHHHHHHhCC
Q 003910 404 --------------------------------------------------------RQTLLFSATMPRKVEKLAREILSD 427 (787)
Q Consensus 404 --------------------------------------------------------~q~ll~SAT~~~~v~~l~~~~l~~ 427 (787)
.++.+||.|......++.. .++-
T Consensus 306 ~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~-iY~l 384 (925)
T PRK12903 306 RDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFID-IYNM 384 (925)
T ss_pred ECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHH-HhCC
Confidence 1233444443332222222 2222
Q ss_pred CeEEEecccccccccceEEEEecCCCcchHHHHHHhcCCcC-CCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCH
Q 003910 428 PVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQ 506 (787)
Q Consensus 428 p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~ 506 (787)
.+.......+....+... .+......|+..+++.+.... ...+|||.|.+.+..+.|+..|.+.+++..+|+....
T Consensus 385 ~Vv~IPTnkP~~R~D~~d--~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~- 461 (925)
T PRK12903 385 RVNVVPTNKPVIRKDEPD--SIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN- 461 (925)
T ss_pred CEEECCCCCCeeeeeCCC--cEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch-
Confidence 222221111111111111 122234567888877766543 3459999999999999999999999999999998643
Q ss_pred HHHHHHHHHhhcCC-ccEEEEehhhhccCCCCCcc--------EEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEcc
Q 003910 507 ASRMEILQKFKSGV-YHVLIATDVAARGLDIKSIK--------SVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ 577 (787)
Q Consensus 507 ~eR~~~l~~F~~G~-~~VLVaT~v~~rGlDip~v~--------~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~ 577 (787)
+++..+-. ..|. -.|.|||++|+||.||.--. |||....+.|..---|..||+||.| .+|.+.+|++-
T Consensus 462 -e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQG-DpGss~f~lSL 538 (925)
T PRK12903 462 -AREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQG-DVGESRFFISL 538 (925)
T ss_pred -hhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCC-CCCcceEEEec
Confidence 34433332 4453 46999999999999997432 8999999999988899999999999 68999999887
Q ss_pred ccH
Q 003910 578 KEA 580 (787)
Q Consensus 578 ~d~ 580 (787)
+|.
T Consensus 539 eD~ 541 (925)
T PRK12903 539 DDQ 541 (925)
T ss_pred chH
Confidence 764
No 142
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.72 E-value=2.1e-16 Score=180.21 Aligned_cols=158 Identities=19% Similarity=0.241 Sum_probs=112.6
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhh-c
Q 003910 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS-H 325 (787)
Q Consensus 247 ~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~-~ 325 (787)
.|-.||.+.+..+-.+...+|+|||-+|||.+... ++..+++. .+...+|+++||..|+.|+...+...... +
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY-~iEKVLRe-----sD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t 584 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFY-AIEKVLRE-----SDSDVVIYVAPTKALVNQVSANVYARFDTKT 584 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHH-HHHHHHhh-----cCCCEEEEecchHHHhhhhhHHHHHhhccCc
Confidence 58899999999999999999999999999986433 34444432 34667899999999999998777766522 1
Q ss_pred CceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHh---ccccccceeEEEEechhhhhcCCChHHHHHHhhhcCC
Q 003910 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM---KALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRP 402 (787)
Q Consensus 326 ~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~---~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~ 402 (787)
-.+.+.+.|.....-++. .-.|.|+|+-|+.|..++.. ......++.+||+||+|.+.+..-.-.+..++..+
T Consensus 585 ~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li-- 660 (1330)
T KOG0949|consen 585 FLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI-- 660 (1330)
T ss_pred cccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc--
Confidence 222233333222211111 11499999999999998876 34457889999999999988765444445555544
Q ss_pred CceEEEEeccCc
Q 003910 403 DRQTLLFSATMP 414 (787)
Q Consensus 403 ~~q~ll~SAT~~ 414 (787)
.+.+|++|||+-
T Consensus 661 ~CP~L~LSATig 672 (1330)
T KOG0949|consen 661 PCPFLVLSATIG 672 (1330)
T ss_pred CCCeeEEecccC
Confidence 356899999974
No 143
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.69 E-value=1.7e-16 Score=148.84 Aligned_cols=119 Identities=45% Similarity=0.718 Sum_probs=109.2
Q ss_pred chHHHHHHhcCCcC-CCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhcc
Q 003910 455 EKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARG 533 (787)
Q Consensus 455 ~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rG 533 (787)
.|...+...+.... ..+++||||++...++.++++|...+..+..+||.++..+|..++..|+++...|||+|.++++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 67777777776654 46799999999999999999999989999999999999999999999999999999999999999
Q ss_pred CCCCCccEEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEE
Q 003910 534 LDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTL 574 (787)
Q Consensus 534 lDip~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l 574 (787)
+|+|.+++||++++|++...|+|++||++|.|+ .|.++++
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~-~~~~~~~ 131 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQ-KGTAILL 131 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCC-CceEEeC
Confidence 999999999999999999999999999999994 6877753
No 144
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.69 E-value=5.1e-15 Score=181.39 Aligned_cols=122 Identities=17% Similarity=0.225 Sum_probs=87.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHHcCC--ceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCC--ccEEEE
Q 003910 469 DDGDVLVFASKKTTVDEIESQLAQKGF--KAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKS--IKSVVN 544 (787)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~g~--~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~--v~~VI~ 544 (787)
..|++|||++++...+.++..|..... ...++.-+++...|..+++.|+.+.-.||++|..+.+|||+|+ +.+||+
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 457999999999999999999976432 1222332444445788999999988899999999999999998 588998
Q ss_pred ecCCC----C--------------------------HHHHHHHhhccCCCCCCCcEEEEEEccc--cHHHHHHHHHHHH
Q 003910 545 FDIAR----D--------------------------MDMHVHRIGRTGRAGDKDGTAYTLVTQK--EARFAGELVNSLI 591 (787)
Q Consensus 545 ~d~p~----s--------------------------~~~y~QriGR~gR~G~~~G~~i~l~~~~--d~~~~~~l~~~l~ 591 (787)
..+|. + +..+.|.+||.-|..+..|.+ +++... ...+-..+++.|-
T Consensus 831 ~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v-~ilD~R~~~k~Yg~~~l~sLP 908 (928)
T PRK08074 831 VRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTV-FVLDRRLTTTSYGKYFLESLP 908 (928)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEE-EEecCccccchHHHHHHHhCC
Confidence 77664 1 112259999999987544544 444433 4445566666653
No 145
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.69 E-value=1.9e-14 Score=166.29 Aligned_cols=107 Identities=21% Similarity=0.238 Sum_probs=79.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhc----CCccEEEEehhhhccCCC--------
Q 003910 469 DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKS----GVYHVLIATDVAARGLDI-------- 536 (787)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~----G~~~VLVaT~v~~rGlDi-------- 536 (787)
..|++||.+.++..+..++..|...--....++|..+ .+...+++|+. |...||++|+.+-+|||+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~ 546 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPD 546 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCC
Confidence 4679999999999999999999764323455666543 34667888887 478999999999999999
Q ss_pred CC--ccEEEEecCCCC-------------------------HHHHHHHhhccCCCCCC--CcEEEEEEcc
Q 003910 537 KS--IKSVVNFDIARD-------------------------MDMHVHRIGRTGRAGDK--DGTAYTLVTQ 577 (787)
Q Consensus 537 p~--v~~VI~~d~p~s-------------------------~~~y~QriGR~gR~G~~--~G~~i~l~~~ 577 (787)
|+ +++||+..+|.. ...+.|-+||.-|.... .|+.+++-..
T Consensus 547 ~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R 616 (636)
T TIGR03117 547 KDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGR 616 (636)
T ss_pred CCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCC
Confidence 33 899999877731 12235888999998744 5655555444
No 146
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.69 E-value=2e-15 Score=186.39 Aligned_cols=325 Identities=22% Similarity=0.267 Sum_probs=210.0
Q ss_pred CCCcHHHHHHHHHHH-----cCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHH
Q 003910 246 EKPTSIQCQALPIIL-----SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKK 320 (787)
Q Consensus 246 ~~ptp~Q~~ai~~il-----~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~ 320 (787)
..+.++|..++.|+. .+.+.+++.+||.|||++.+..+ .+++.... ...+.+||+||+ .++.+|.+++.+
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l-~~~~~~~~---~~~~~~liv~p~-s~~~nw~~e~~k 411 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALL-LSLLESIK---VYLGPALIVVPA-SLLSNWKREFEK 411 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHH-Hhhhhccc---CCCCCeEEEecH-HHHHHHHHHHhh
Confidence 568899999999976 25789999999999999855444 33333221 113568999998 677789999999
Q ss_pred HhhhcCceEEEEECCCCh----HHHHHHHhcC-----CcEEEeCHHHHHHHH-HhccccccceeEEEEechhhhhcCCCh
Q 003910 321 FAKSHGIRVSAVYGGMSK----LDQFKELKAG-----CEIVIATPGRLIDML-KMKALTMSRVTYLVLDEADRMFDLGFE 390 (787)
Q Consensus 321 ~~~~~~i~v~~~~gg~~~----~~~~~~l~~~-----~dIIV~Tp~~L~~~l-~~~~~~l~~i~~lViDEah~m~~~~f~ 390 (787)
|++.... +...+|.... .+....+... .+|+++|++.|.... ....+.-..+.++|+||||++.+..-
T Consensus 412 ~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~s- 489 (866)
T COG0553 412 FAPDLRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQS- 489 (866)
T ss_pred hCccccc-eeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhhh-
Confidence 9874433 5555555431 4444444432 799999999998842 12234455789999999999765321
Q ss_pred HHHHHHhhhcCCCceEEEEeccC-cHHHHHHHH-----------------------------------------------
Q 003910 391 PQIRSIVGQIRPDRQTLLFSATM-PRKVEKLAR----------------------------------------------- 422 (787)
Q Consensus 391 ~~i~~il~~~~~~~q~ll~SAT~-~~~v~~l~~----------------------------------------------- 422 (787)
.....+..++...+ +++|.|+ .+.+.++..
T Consensus 490 -~~~~~l~~~~~~~~-~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 567 (866)
T COG0553 490 -SEGKALQFLKALNR-LDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELLRK 567 (866)
T ss_pred -HHHHHHHHHhhcce-eeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHHHH
Confidence 11111111111111 2223332 111111100
Q ss_pred --------------------------------------------------------------------------------
Q 003910 423 -------------------------------------------------------------------------------- 422 (787)
Q Consensus 423 -------------------------------------------------------------------------------- 422 (787)
T Consensus 568 ~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 647 (866)
T COG0553 568 LLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTR 647 (866)
T ss_pred HHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHH
Confidence
Q ss_pred --HHhCCCeEEEec-ccccccc--------cceEEEEecCCCc-chHHHHHHhc-CCcCCCC---CEEEEecccccHHHH
Q 003910 423 --EILSDPVRVTVG-EVGMANE--------DITQVVHVIPSDA-EKLPWLLEKL-PGMIDDG---DVLVFASKKTTVDEI 486 (787)
Q Consensus 423 --~~l~~p~~i~v~-~~~~~~~--------~i~q~~~~~~~~~-~k~~~L~~~L-~~~~~~~---kvLVF~~s~~~a~~l 486 (787)
.+|.+|..+... ....... ............. .|...+.++| ......+ ++|||++.....+.+
T Consensus 648 lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il 727 (866)
T COG0553 648 LRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLL 727 (866)
T ss_pred HHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHH
Confidence 001111110000 0000000 0000000000011 5666676777 4444444 899999999999999
Q ss_pred HHHHHHcCCceeeccCCCCHHHHHHHHHHhhcC--CccEEEEehhhhccCCCCCccEEEEecCCCCHHHHHHHhhccCCC
Q 003910 487 ESQLAQKGFKAAALHGDKDQASRMEILQKFKSG--VYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRA 564 (787)
Q Consensus 487 ~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G--~~~VLVaT~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~ 564 (787)
..+|...++.+..++|.++...|...++.|.++ ...+|++|.+++.|+|+..+++||+||++||+....|++.|++|.
T Consensus 728 ~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~Ri 807 (866)
T COG0553 728 EDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRI 807 (866)
T ss_pred HHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHh
Confidence 999999999999999999999999999999986 456777889999999999999999999999999999999999999
Q ss_pred CCCCc-EEEEEEcccc
Q 003910 565 GDKDG-TAYTLVTQKE 579 (787)
Q Consensus 565 G~~~G-~~i~l~~~~d 579 (787)
|++.. .+|.|++...
T Consensus 808 gQ~~~v~v~r~i~~~t 823 (866)
T COG0553 808 GQKRPVKVYRLITRGT 823 (866)
T ss_pred cCcceeEEEEeecCCc
Confidence 95444 4556666543
No 147
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.67 E-value=2.8e-15 Score=174.70 Aligned_cols=274 Identities=19% Similarity=0.186 Sum_probs=175.5
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcC
Q 003910 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (787)
Q Consensus 247 ~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~ 326 (787)
.|++.|.-+. +.-.+..|..+.||.|||+++.+|++...+ .|..|-||+++..||.+-++++..+...+|
T Consensus 76 r~ydvQlig~--l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL--------~G~~VhVvT~NdyLA~RD~e~m~pvy~~LG 145 (870)
T CHL00122 76 RHFDVQLIGG--LVLNDGKIAEMKTGEGKTLVATLPAYLNAL--------TGKGVHIVTVNDYLAKRDQEWMGQIYRFLG 145 (870)
T ss_pred CCCchHhhhh--HhhcCCccccccCCCCchHHHHHHHHHHHh--------cCCceEEEeCCHHHHHHHHHHHHHHHHHcC
Confidence 3677776654 444567899999999999999999965543 256689999999999999999999999999
Q ss_pred ceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHH-HHHHh------ccccccceeEEEEechhhhh-cCC----------
Q 003910 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLI-DMLKM------KALTMSRVTYLVLDEADRMF-DLG---------- 388 (787)
Q Consensus 327 i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~-~~l~~------~~~~l~~i~~lViDEah~m~-~~~---------- 388 (787)
+.|.++.++.+..+... .-.|||+.+|..-|- ++|.. .......+.++||||+|.|+ |..
T Consensus 146 Lsvg~i~~~~~~~err~--aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArTPLiISg~~ 223 (870)
T CHL00122 146 LTVGLIQEGMSSEERKK--NYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLIISGQS 223 (870)
T ss_pred CceeeeCCCCChHHHHH--hcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCCceeccCCC
Confidence 99999988777654322 234899999987542 22221 12235678999999999763 100
Q ss_pred -----ChHHHHHHhhhcCCC------------------------------------------------------------
Q 003910 389 -----FEPQIRSIVGQIRPD------------------------------------------------------------ 403 (787)
Q Consensus 389 -----f~~~i~~il~~~~~~------------------------------------------------------------ 403 (787)
....+..+...+..+
T Consensus 224 ~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~d~dYiV 303 (870)
T CHL00122 224 KTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNVHYIV 303 (870)
T ss_pred ccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 000011111111000
Q ss_pred --------------------------------------------------------ceEEEEeccCcHHHHHHHHHHhCC
Q 003910 404 --------------------------------------------------------RQTLLFSATMPRKVEKLAREILSD 427 (787)
Q Consensus 404 --------------------------------------------------------~q~ll~SAT~~~~v~~l~~~~l~~ 427 (787)
..+.+||.|......+ +...++-
T Consensus 304 ~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~E-f~~iY~l 382 (870)
T CHL00122 304 RNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELE-FEKIYNL 382 (870)
T ss_pred ECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHH-HHHHhCC
Confidence 2344555555433222 2333333
Q ss_pred CeEEEecccccccccceEEEEecCCCcchHHHHHHhcCCcC-CCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCH
Q 003910 428 PVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQ 506 (787)
Q Consensus 428 p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~ 506 (787)
.+.+.....+....+.. ..+......|+..+++.+.... ...+|||-|.+.+..+.|+..|.+.+++..+|+..-..
T Consensus 383 ~vv~IPtnkp~~R~d~~--d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~ 460 (870)
T CHL00122 383 EVVCIPTHRPMLRKDLP--DLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPEN 460 (870)
T ss_pred CEEECCCCCCccceeCC--CeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCcc
Confidence 33332222222221111 1223345567777777655443 34599999999999999999999999999999986422
Q ss_pred HHHH-HHHHHhhcCC-ccEEEEehhhhccCCCC
Q 003910 507 ASRM-EILQKFKSGV-YHVLIATDVAARGLDIK 537 (787)
Q Consensus 507 ~eR~-~~l~~F~~G~-~~VLVaT~v~~rGlDip 537 (787)
.+++ .++.. .|+ -.|.|||++|+||.||.
T Consensus 461 ~~~EA~IIA~--AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 461 VRRESEIVAQ--AGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred chhHHHHHHh--cCCCCcEEEeccccCCCcCee
Confidence 2233 23332 343 46999999999999975
No 148
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.66 E-value=2.2e-16 Score=134.69 Aligned_cols=78 Identities=44% Similarity=0.695 Sum_probs=75.7
Q ss_pred HHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEEEecCCCCHHHHHHHhhccCCCC
Q 003910 488 SQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAG 565 (787)
Q Consensus 488 ~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G 565 (787)
++|...++.+..+||++++.+|..+++.|+++...|||||+++++|+|+|.+++||+|++|+++..|.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 468889999999999999999999999999999999999999999999999999999999999999999999999986
No 149
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.66 E-value=1.6e-15 Score=164.89 Aligned_cols=279 Identities=22% Similarity=0.287 Sum_probs=183.5
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHH
Q 003910 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~ 340 (787)
..+-++-++||.||||.- +|+++.. ....+++-|.|-||..+++.+.+. |+.+.+++|......
T Consensus 190 ~RkIi~H~GPTNSGKTy~----ALqrl~~--------aksGvycGPLrLLA~EV~~r~na~----gipCdL~TGeE~~~~ 253 (700)
T KOG0953|consen 190 RRKIIMHVGPTNSGKTYR----ALQRLKS--------AKSGVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEERRFV 253 (700)
T ss_pred hheEEEEeCCCCCchhHH----HHHHHhh--------hccceecchHHHHHHHHHHHhhhc----CCCccccccceeeec
Confidence 334567789999999965 4566532 344799999999999999988887 888888888544332
Q ss_pred HHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHH-HhhhcCCCceEEEEeccCcHHHHH
Q 003910 341 QFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRS-IVGQIRPDRQTLLFSATMPRKVEK 419 (787)
Q Consensus 341 ~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~-il~~~~~~~q~ll~SAT~~~~v~~ 419 (787)
... -..+..+-||-+++- .-..+++.||||+++|.+......+.. +|.......++++ -+.+-.
T Consensus 254 ~~~--~~~a~hvScTVEM~s--------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCG-----epsvld 318 (700)
T KOG0953|consen 254 LDN--GNPAQHVSCTVEMVS--------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCG-----EPSVLD 318 (700)
T ss_pred CCC--CCcccceEEEEEEee--------cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccC-----CchHHH
Confidence 211 112566677743321 124688999999999998765555443 4444334444333 234455
Q ss_pred HHHHHhCCC-eEEEecccccccccceEEEEecCCCcchHHHHHHhcCCcCCCCCEEEEecccccHHHHHHHHHHcCCc-e
Q 003910 420 LAREILSDP-VRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFK-A 497 (787)
Q Consensus 420 l~~~~l~~p-~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~-v 497 (787)
+.+.++... ..+.+ ..+..+ ....-...++..|... ..|.+|| |-+++....+...+.+.+.. +
T Consensus 319 lV~~i~k~TGd~vev-----------~~YeRl-~pL~v~~~~~~sl~nl-k~GDCvV-~FSkk~I~~~k~kIE~~g~~k~ 384 (700)
T KOG0953|consen 319 LVRKILKMTGDDVEV-----------REYERL-SPLVVEETALGSLSNL-KPGDCVV-AFSKKDIFTVKKKIEKAGNHKC 384 (700)
T ss_pred HHHHHHhhcCCeeEE-----------Eeeccc-CcceehhhhhhhhccC-CCCCeEE-EeehhhHHHHHHHHHHhcCcce
Confidence 666665421 01111 111111 0111111333444433 3455544 55777888888888888766 9
Q ss_pred eeccCCCCHHHHHHHHHHhhc--CCccEEEEehhhhccCCCCCccEEEEecCC---------CCHHHHHHHhhccCCCCC
Q 003910 498 AALHGDKDQASRMEILQKFKS--GVYHVLIATDVAARGLDIKSIKSVVNFDIA---------RDMDMHVHRIGRTGRAGD 566 (787)
Q Consensus 498 ~~lhg~~~~~eR~~~l~~F~~--G~~~VLVaT~v~~rGlDip~v~~VI~~d~p---------~s~~~y~QriGR~gR~G~ 566 (787)
++|+|++++..|..--..|++ ++++||||||++++|||+ +++.||+|++- -......|..||+||.|.
T Consensus 385 aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s 463 (700)
T KOG0953|consen 385 AVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGS 463 (700)
T ss_pred EEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhccccccc
Confidence 999999999999999999987 899999999999999999 79999998864 356777899999999982
Q ss_pred --CCcEEEEEEccccHHHHHHH
Q 003910 567 --KDGTAYTLVTQKEARFAGEL 586 (787)
Q Consensus 567 --~~G~~i~l~~~~d~~~~~~l 586 (787)
..|.+.+|. .+|...+..+
T Consensus 464 ~~~~G~vTtl~-~eDL~~L~~~ 484 (700)
T KOG0953|consen 464 KYPQGEVTTLH-SEDLKLLKRI 484 (700)
T ss_pred CCcCceEEEee-HhhHHHHHHH
Confidence 235555444 3444444433
No 150
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.65 E-value=3.5e-15 Score=140.43 Aligned_cols=144 Identities=40% Similarity=0.548 Sum_probs=112.5
Q ss_pred CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHH
Q 003910 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF 342 (787)
Q Consensus 263 rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~ 342 (787)
+++++.++||+|||.+++..+...+.. ...+++||++|++.|+.|+.+.+..+... .+.+..+.+........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~------~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 73 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS------LKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQE 73 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc------ccCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHH
Confidence 478999999999999877777665533 23567999999999999999999998765 67788888877666665
Q ss_pred HHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEeccC
Q 003910 343 KELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATM 413 (787)
Q Consensus 343 ~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~ 413 (787)
.......+|+|+|++.+...+.........+.+|||||+|.+....+...............+++++|||+
T Consensus 74 ~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 74 KLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 55567899999999999988766555566789999999999887655444323344446678899999996
No 151
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.62 E-value=3.6e-14 Score=165.08 Aligned_cols=127 Identities=22% Similarity=0.262 Sum_probs=97.8
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcC
Q 003910 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (787)
Q Consensus 247 ~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~ 326 (787)
.|+++|.-+ .+.-.+.-|..+.||-|||+++.+|++...+. |..|-||+++.-||..-++++..+...+|
T Consensus 85 r~ydVQliG--gl~Lh~G~IAEM~TGEGKTL~atlpaylnAL~--------GkgVhVVTvNdYLA~RDae~m~~vy~~LG 154 (939)
T PRK12902 85 RHFDVQLIG--GMVLHEGQIAEMKTGEGKTLVATLPSYLNALT--------GKGVHVVTVNDYLARRDAEWMGQVHRFLG 154 (939)
T ss_pred CcchhHHHh--hhhhcCCceeeecCCCChhHHHHHHHHHHhhc--------CCCeEEEeCCHHHHHhHHHHHHHHHHHhC
Confidence 355666554 44445667899999999999999998876543 55689999999999999999999999999
Q ss_pred ceEEEEECCCChHHHHHHHhcCCcEEEeCHHHH-----HHHHHh--ccccccceeEEEEechhhhh
Q 003910 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRL-----IDMLKM--KALTMSRVTYLVLDEADRMF 385 (787)
Q Consensus 327 i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L-----~~~l~~--~~~~l~~i~~lViDEah~m~ 385 (787)
+.|.++.++....+. ...-.|||+.+|...| .+.+.. .......+.++||||+|.|+
T Consensus 155 Ltvg~i~~~~~~~er--r~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 155 LSVGLIQQDMSPEER--KKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred CeEEEECCCCChHHH--HHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 999999887655433 2334699999999987 443322 22345778999999999764
No 152
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.59 E-value=2.5e-14 Score=154.99 Aligned_cols=348 Identities=13% Similarity=0.072 Sum_probs=231.4
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHH
Q 003910 237 MHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYL 316 (787)
Q Consensus 237 ~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~ 316 (787)
.+.+.+..-.....+|..+|..+.+|+++++.-.|-+||.++|.+..+..++..+ ....+++.|+.++++...+
T Consensus 276 ~~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~------~s~~~~~~~~~~~~~~~~~ 349 (1034)
T KOG4150|consen 276 RSLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCH------ATNSLLPSEMVEHLRNGSK 349 (1034)
T ss_pred HHHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCc------ccceecchhHHHHhhccCC
Confidence 3444555556788999999999999999999999999999999988877765543 3346888999998865432
Q ss_pred HHHHHh---hhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhcccc----ccceeEEEEechhhhhcCC-
Q 003910 317 ETKKFA---KSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALT----MSRVTYLVLDEADRMFDLG- 388 (787)
Q Consensus 317 ~~~~~~---~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~----l~~i~~lViDEah~m~~~~- 388 (787)
.+.-.. +...--++-.+.+.+......-...+..+|++.|......+.-+..+ +-...++++||+|..+-..
T Consensus 350 ~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~ 429 (1034)
T KOG4150|consen 350 GQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTK 429 (1034)
T ss_pred ceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchh
Confidence 211110 01122345556666666666666778999999999988766543332 2345678999999654321
Q ss_pred --ChHHHHHHhhhc-----CCCceEEEEeccCcHHHHHHHHHHhC--CCeEEEecccccccccceEEEEecCC-----C-
Q 003910 389 --FEPQIRSIVGQI-----RPDRQTLLFSATMPRKVEKLAREILS--DPVRVTVGEVGMANEDITQVVHVIPS-----D- 453 (787)
Q Consensus 389 --f~~~i~~il~~~-----~~~~q~ll~SAT~~~~v~~l~~~~l~--~p~~i~v~~~~~~~~~i~q~~~~~~~-----~- 453 (787)
...+++.++..+ ....|++-.+||+...++- ...+.+ ....+.+...+. .-...+.+-+. .
T Consensus 430 ~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~-~~~~~~~~E~~Li~~DGSPs---~~K~~V~WNP~~~P~~~~ 505 (1034)
T KOG4150|consen 430 ALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRL-RSELANLSELELVTIDGSPS---SEKLFVLWNPSAPPTSKS 505 (1034)
T ss_pred hHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHH-HHHhcCCcceEEEEecCCCC---ccceEEEeCCCCCCcchh
Confidence 123444444433 3467899999998766543 333332 222333322221 22333333322 1
Q ss_pred --cchHHHHHHhcCCcCC-CCCEEEEecccccHHHHHHHHHHc----C----CceeeccCCCCHHHHHHHHHHhhcCCcc
Q 003910 454 --AEKLPWLLEKLPGMID-DGDVLVFASKKTTVDEIESQLAQK----G----FKAAALHGDKDQASRMEILQKFKSGVYH 522 (787)
Q Consensus 454 --~~k~~~L~~~L~~~~~-~~kvLVF~~s~~~a~~l~~~L~~~----g----~~v~~lhg~~~~~eR~~~l~~F~~G~~~ 522 (787)
..++.....++.+... +-++|-||+.++.|+.+....+.. + -.+..+.|+....+|.++....--|+..
T Consensus 506 ~~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~ 585 (1034)
T KOG4150|consen 506 EKSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLC 585 (1034)
T ss_pred hhhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeee
Confidence 1222222233333333 348999999999998776554432 2 1356678999999999999999999999
Q ss_pred EEEEehhhhccCCCCCccEEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEE--ccccHHHHHHHHHHHHHcCC
Q 003910 523 VLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLV--TQKEARFAGELVNSLIAAGQ 595 (787)
Q Consensus 523 VLVaT~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~--~~~d~~~~~~l~~~l~~~~~ 595 (787)
-+|+|++++-|+||-+++.|++.++|.++..+.|..||+||.. ++..++++. .+-|.-++..-...+...+.
T Consensus 586 giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRN-k~SLavyva~~~PVDQ~Y~~HP~~l~~~pN~ 659 (1034)
T KOG4150|consen 586 GIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRN-KPSLAVYVAFLGPVDQYYMSHPDKLFGSPNE 659 (1034)
T ss_pred EEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccC-CCceEEEEEeccchhhHhhcCcHHHhCCCcc
Confidence 9999999999999999999999999999999999999999987 566555443 34455555444444444333
No 153
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.57 E-value=1.5e-14 Score=143.79 Aligned_cols=153 Identities=23% Similarity=0.183 Sum_probs=101.9
Q ss_pred CCcHHHHHHHHHHHc-------CCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHH
Q 003910 247 KPTSIQCQALPIILS-------GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETK 319 (787)
Q Consensus 247 ~ptp~Q~~ai~~il~-------grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~ 319 (787)
+|+++|.+++..+.. .+.+++.++||+|||.+++..+.... . ++||++|+..|+.|+.+.+.
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~-~----------~~l~~~p~~~l~~Q~~~~~~ 71 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA-R----------KVLIVAPNISLLEQWYDEFD 71 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH-C----------EEEEEESSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc-c----------ceeEecCHHHHHHHHHHHHH
Confidence 589999999999884 68999999999999998665444443 2 68999999999999999997
Q ss_pred HHhhhcCceEEE-----------EECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhc-----------cccccceeEEE
Q 003910 320 KFAKSHGIRVSA-----------VYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK-----------ALTMSRVTYLV 377 (787)
Q Consensus 320 ~~~~~~~i~v~~-----------~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~-----------~~~l~~i~~lV 377 (787)
.+.......... ..................+|+++|+..|....... ......+.+||
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI 151 (184)
T PF04851_consen 72 DFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVI 151 (184)
T ss_dssp HHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEE
T ss_pred HhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEE
Confidence 765421111000 01111111111222346899999999999876531 12345688999
Q ss_pred EechhhhhcCCChHHHHHHhhhcCCCceEEEEeccCcH
Q 003910 378 LDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPR 415 (787)
Q Consensus 378 iDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~~ 415 (787)
+||||++.... ....++. .+...+|+||||+.+
T Consensus 152 ~DEaH~~~~~~---~~~~i~~--~~~~~~l~lTATp~r 184 (184)
T PF04851_consen 152 IDEAHHYPSDS---SYREIIE--FKAAFILGLTATPFR 184 (184)
T ss_dssp EETGGCTHHHH---HHHHHHH--SSCCEEEEEESS-S-
T ss_pred EehhhhcCCHH---HHHHHHc--CCCCeEEEEEeCccC
Confidence 99999866432 1344444 566779999999864
No 154
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.56 E-value=4.5e-13 Score=160.18 Aligned_cols=103 Identities=22% Similarity=0.312 Sum_probs=78.1
Q ss_pred CCCEEEEecccccHHHHHHHHHHcCCc-eeeccCCCCHHHHHHHHHHhhcCCc-cEEEEehhhhccCCCCC--ccEEEEe
Q 003910 470 DGDVLVFASKKTTVDEIESQLAQKGFK-AAALHGDKDQASRMEILQKFKSGVY-HVLIATDVAARGLDIKS--IKSVVNF 545 (787)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~g~~-v~~lhg~~~~~eR~~~l~~F~~G~~-~VLVaT~v~~rGlDip~--v~~VI~~ 545 (787)
.+++|||++++..+..+.+.|...... ....+|..+ +...++.|+.+.- .+||+|..+.+|||+++ +..||+.
T Consensus 479 ~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~ 555 (654)
T COG1199 479 PGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVIV 555 (654)
T ss_pred CCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEEE
Confidence 459999999999999999999886553 344454444 4478888877654 89999999999999998 6889987
Q ss_pred cCCCC------------------------------HHHHHHHhhccCCCCCCCcEEEEEE
Q 003910 546 DIARD------------------------------MDMHVHRIGRTGRAGDKDGTAYTLV 575 (787)
Q Consensus 546 d~p~s------------------------------~~~y~QriGR~gR~G~~~G~~i~l~ 575 (787)
..|.- +....|.+||+-|.-+..|.++++-
T Consensus 556 ~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD 615 (654)
T COG1199 556 GLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLD 615 (654)
T ss_pred ecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEec
Confidence 77651 2333699999999764445555443
No 155
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.50 E-value=6.4e-14 Score=119.76 Aligned_cols=81 Identities=46% Similarity=0.724 Sum_probs=77.7
Q ss_pred HHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEEEecCCCCHHHHHHHhhccCCC
Q 003910 485 EIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRA 564 (787)
Q Consensus 485 ~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~ 564 (787)
.++..|...++.+..+||.++..+|..+++.|+.+...|||+|+++++|+|++.+++||++++|++...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 56788888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 003910 565 G 565 (787)
Q Consensus 565 G 565 (787)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
No 156
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.49 E-value=9.1e-12 Score=148.42 Aligned_cols=117 Identities=22% Similarity=0.362 Sum_probs=80.9
Q ss_pred CCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhc----CCccEEEEehhhhccCCCCC--ccEEE
Q 003910 470 DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKS----GVYHVLIATDVAARGLDIKS--IKSVV 543 (787)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~----G~~~VLVaT~v~~rGlDip~--v~~VI 543 (787)
.+++|||++++..++.++..|....-....++|.. .+..+++.|++ ++..||++|..+.+|||+|+ +++||
T Consensus 534 ~gg~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~vI 610 (697)
T PRK11747 534 HKGSLVLFASRRQMQKVADLLPRDLRLMLLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQVI 610 (697)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCCc---hHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEEE
Confidence 45799999999999999999975321234456643 46778877764 67789999999999999998 89999
Q ss_pred EecCCC----CHH--------------------------HHHHHhhccCCCCCCCcEEEEEEccc--cHHHHHHHHHHH
Q 003910 544 NFDIAR----DMD--------------------------MHVHRIGRTGRAGDKDGTAYTLVTQK--EARFAGELVNSL 590 (787)
Q Consensus 544 ~~d~p~----s~~--------------------------~y~QriGR~gR~G~~~G~~i~l~~~~--d~~~~~~l~~~l 590 (787)
+..+|. ++. .+.|.+||.-|.....|.. +++.+. ...+-..+++.|
T Consensus 611 I~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i-~ilD~R~~~~~Yg~~~l~sL 688 (697)
T PRK11747 611 ITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRV-TILDRRLLTKRYGKRLLDAL 688 (697)
T ss_pred EEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEE-EEEcccccchhHHHHHHHhC
Confidence 977664 221 1248999999987444543 344333 334445555444
No 157
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.48 E-value=5.7e-13 Score=155.94 Aligned_cols=313 Identities=18% Similarity=0.227 Sum_probs=203.8
Q ss_pred CCcHHHHHHHHHHHcC-CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHH-Hhhh
Q 003910 247 KPTSIQCQALPIILSG-RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKK-FAKS 324 (787)
Q Consensus 247 ~ptp~Q~~ai~~il~g-rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~-~~~~ 324 (787)
...|+|.|.++.+.+. +++++++|+|||||+++-++++. +....++++++|..+.+...+..+.+ |.+.
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~---------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~ 1213 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR---------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKL 1213 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC---------CccceEEEEecchHHHHHHHHHHHHHhhccc
Confidence 3478999999998855 67999999999999998777765 23456799999999999877766655 4444
Q ss_pred cCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCC------ChHHHHHHhh
Q 003910 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG------FEPQIRSIVG 398 (787)
Q Consensus 325 ~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~------f~~~i~~il~ 398 (787)
.|..++-+.|..+... ++....+|||+||+++-.+ . ..+.+++.|+||+|.+.... ... ++.|-.
T Consensus 1214 ~G~~~~~l~ge~s~~l---kl~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ia~ 1284 (1674)
T KOG0951|consen 1214 LGLRIVKLTGETSLDL---KLLQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRYIAS 1284 (1674)
T ss_pred cCceEEecCCccccch---HHhhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhcccCCceEEEEee-HHHHHH
Confidence 6777777776554432 3444589999999998665 2 57789999999999887321 112 555556
Q ss_pred hcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCC---CcchHH---HHHHhcCC-cCCCC
Q 003910 399 QIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPS---DAEKLP---WLLEKLPG-MIDDG 471 (787)
Q Consensus 399 ~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~---~~~k~~---~L~~~L~~-~~~~~ 471 (787)
.+-+..+++.+|..+.+. .+++ .+...-.+.. ............+..+.. ....+. ..+..+.. .....
T Consensus 1285 q~~k~ir~v~ls~~lana-~d~i--g~s~~~v~Nf-~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k 1360 (1674)
T KOG0951|consen 1285 QLEKKIRVVALSSSLANA-RDLI--GASSSGVFNF-SPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRK 1360 (1674)
T ss_pred HHHhheeEEEeehhhccc-hhhc--cccccceeec-CcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCC
Confidence 666777889998887643 3331 1111111111 111111112222222211 111111 11112221 22456
Q ss_pred CEEEEecccccHHHHHHHHHHc----------------------CCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehh
Q 003910 472 DVLVFASKKTTVDEIESQLAQK----------------------GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDV 529 (787)
Q Consensus 472 kvLVF~~s~~~a~~l~~~L~~~----------------------g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v 529 (787)
+.+||+++++.|..++..|-.. .++..+=|.+++..+...+...|..|.+.|+|...-
T Consensus 1361 ~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~ 1440 (1674)
T KOG0951|consen 1361 PAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD 1440 (1674)
T ss_pred CeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc
Confidence 8999999999998776655321 233444488999999999999999999999998766
Q ss_pred hhccCCCCCccEEE----Eec------CCCCHHHHHHHhhccCCCCCCCcEEEEEEccccHHHHHHH
Q 003910 530 AARGLDIKSIKSVV----NFD------IARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGEL 586 (787)
Q Consensus 530 ~~rGlDip~v~~VI----~~d------~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l 586 (787)
..|+-...--+|| .|| .+..+...+|++|++.|+ |.|+++.....+.++++.
T Consensus 1441 -~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~~----~k~vi~~~~~~k~yykkf 1502 (1674)
T KOG0951|consen 1441 -CYGTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASGA----GKCVIMCHTPKKEYYKKF 1502 (1674)
T ss_pred -cccccccceEEEEecceeecccccccccCchhHHHHHhhhhcCC----ccEEEEecCchHHHHHHh
Confidence 7777665433333 244 344688889999999985 678888877777766544
No 158
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.46 E-value=1.4e-11 Score=147.89 Aligned_cols=74 Identities=22% Similarity=0.201 Sum_probs=61.6
Q ss_pred CCCCCcHHHHHHHHHHH----cCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHH
Q 003910 244 GYEKPTSIQCQALPIIL----SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETK 319 (787)
Q Consensus 244 g~~~ptp~Q~~ai~~il----~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~ 319 (787)
.|..++|.|.+.+..+. .+.++|+.+|||+|||++.|.|+|.++...+ ..+++++++.|..=..|+.++++
T Consensus 7 Py~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~-----~~~kIiy~sRThsQl~q~i~Elk 81 (705)
T TIGR00604 7 PYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP-----EVRKIIYASRTHSQLEQATEELR 81 (705)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc-----ccccEEEEcccchHHHHHHHHHH
Confidence 46667999999887765 6789999999999999999999998875432 23679999999999999999999
Q ss_pred HHh
Q 003910 320 KFA 322 (787)
Q Consensus 320 ~~~ 322 (787)
+..
T Consensus 82 ~~~ 84 (705)
T TIGR00604 82 KLM 84 (705)
T ss_pred hhh
Confidence 853
No 159
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.45 E-value=5e-12 Score=149.49 Aligned_cols=310 Identities=19% Similarity=0.170 Sum_probs=178.0
Q ss_pred CCCcHHHHHHHHHHHcCC--------CEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHH
Q 003910 246 EKPTSIQCQALPIILSGR--------DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLE 317 (787)
Q Consensus 246 ~~ptp~Q~~ai~~il~gr--------dvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~ 317 (787)
..-..+|-.|+..+..-+ =+|-.|.||+|||++=.- |+..+.. ...+.+..|..-.|.|..|.-.+
T Consensus 407 ~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNAR-ImyaLsd-----~~~g~RfsiALGLRTLTLQTGda 480 (1110)
T TIGR02562 407 HPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANAR-AMYALRD-----DKQGARFAIALGLRSLTLQTGHA 480 (1110)
T ss_pred CCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHH-HHHHhCC-----CCCCceEEEEccccceeccchHH
Confidence 345679999999887421 256689999999987333 3333322 13456777777888888888888
Q ss_pred HHHHhhhcCceEEEEECCCChHHHHH-------------------------------------------HHh--------
Q 003910 318 TKKFAKSHGIRVSAVYGGMSKLDQFK-------------------------------------------ELK-------- 346 (787)
Q Consensus 318 ~~~~~~~~~i~v~~~~gg~~~~~~~~-------------------------------------------~l~-------- 346 (787)
+++-+...+-...+++|+....+... .+.
T Consensus 481 ~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rl 560 (1110)
T TIGR02562 481 LKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTL 560 (1110)
T ss_pred HHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhh
Confidence 77766544445555555533221110 000
Q ss_pred cCCcEEEeCHHHHHHHHHhc---ccccc----ceeEEEEechhhhhcCCChHHHHHHhhhc-CCCceEEEEeccCcHHHH
Q 003910 347 AGCEIVIATPGRLIDMLKMK---ALTMS----RVTYLVLDEADRMFDLGFEPQIRSIVGQI-RPDRQTLLFSATMPRKVE 418 (787)
Q Consensus 347 ~~~dIIV~Tp~~L~~~l~~~---~~~l~----~i~~lViDEah~m~~~~f~~~i~~il~~~-~~~~q~ll~SAT~~~~v~ 418 (787)
-...|+|||+..++...... ...+. .-+.|||||+|.+-... ...+..++.-+ .....+++||||+|+.+.
T Consensus 561 l~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~-~~~L~rlL~w~~~lG~~VlLmSATLP~~l~ 639 (1110)
T TIGR02562 561 LAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPED-LPALLRLVQLAGLLGSRVLLSSATLPPALV 639 (1110)
T ss_pred hcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHH-HHHHHHHHHHHHHcCCCEEEEeCCCCHHHH
Confidence 01689999999998876321 11111 13579999999732111 11222222211 235679999999998765
Q ss_pred HH-HHHH----------hCC---CeEEEec---cccccc--------------------------ccceE--EEEecCCC
Q 003910 419 KL-AREI----------LSD---PVRVTVG---EVGMAN--------------------------EDITQ--VVHVIPSD 453 (787)
Q Consensus 419 ~l-~~~~----------l~~---p~~i~v~---~~~~~~--------------------------~~i~q--~~~~~~~~ 453 (787)
.. ...| ++. +..|... +..... ..+.. .+..++..
T Consensus 640 ~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~ 719 (1110)
T TIGR02562 640 KTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLSSL 719 (1110)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeecCCc
Confidence 43 3333 221 2222111 100000 00011 11112111
Q ss_pred cc----hHHHHHHhcCC-----------cCC-CC-C---EEEEecccccHHHHHHHHHHc------CCceeeccCCCCHH
Q 003910 454 AE----KLPWLLEKLPG-----------MID-DG-D---VLVFASKKTTVDEIESQLAQK------GFKAAALHGDKDQA 507 (787)
Q Consensus 454 ~~----k~~~L~~~L~~-----------~~~-~~-k---vLVF~~s~~~a~~l~~~L~~~------g~~v~~lhg~~~~~ 507 (787)
.. ....+.+.+.+ ... .+ + -||-++++..+..++..|... .+.+.++|+.....
T Consensus 720 ~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~ 799 (1110)
T TIGR02562 720 PRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLL 799 (1110)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHH
Confidence 11 11122221110 001 22 2 378888888888888888654 24588899998777
Q ss_pred HHHHHHHHh----------------------hc----CCccEEEEehhhhccCCCCCccEEEEecCCCCHHHHHHHhhcc
Q 003910 508 SRMEILQKF----------------------KS----GVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRT 561 (787)
Q Consensus 508 eR~~~l~~F----------------------~~----G~~~VLVaT~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~ 561 (787)
.|..+.+.. .+ +...|+|+|.+++.|+|+. .+.+| --|..+...+|+.||+
T Consensus 800 ~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~d-fd~~~--~~~~~~~sliQ~aGR~ 876 (1110)
T TIGR02562 800 LRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDHD-YDWAI--ADPSSMRSIIQLAGRV 876 (1110)
T ss_pred HHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEeccc-CCeee--eccCcHHHHHHHhhcc
Confidence 776655442 12 3568999999999999993 44443 4477799999999999
Q ss_pred CCCC
Q 003910 562 GRAG 565 (787)
Q Consensus 562 gR~G 565 (787)
.|.+
T Consensus 877 ~R~~ 880 (1110)
T TIGR02562 877 NRHR 880 (1110)
T ss_pred cccc
Confidence 9988
No 160
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.44 E-value=8.1e-12 Score=146.44 Aligned_cols=273 Identities=10% Similarity=0.121 Sum_probs=161.9
Q ss_pred CCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHH---HHHHhc
Q 003910 271 TGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ---FKELKA 347 (787)
Q Consensus 271 TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~---~~~l~~ 347 (787)
+|||||.+|+-.+-..+ . .|..+|||+|...|+.|+.+.++..+. +..++.++++.+..+. +..+..
T Consensus 169 ~GSGKTevyl~~i~~~l-~-------~Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w~~~~~ 238 (665)
T PRK14873 169 PGEDWARRLAAAAAATL-R-------AGRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRWLAVLR 238 (665)
T ss_pred CCCcHHHHHHHHHHHHH-H-------cCCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHHHhC
Confidence 59999999877665554 2 367799999999999999999988763 2567888888876654 444445
Q ss_pred C-CcEEEeCHHHHHHHHHhccccccceeEEEEechhhhh--cC-CChHHHH--HHhhhcCCCceEEEEeccCcHHHHHHH
Q 003910 348 G-CEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF--DL-GFEPQIR--SIVGQIRPDRQTLLFSATMPRKVEKLA 421 (787)
Q Consensus 348 ~-~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~--~~-~f~~~i~--~il~~~~~~~q~ll~SAT~~~~v~~l~ 421 (787)
| ..|||+|-..+ ...+.++.+|||||=|.-. +. ......+ .++.....+..+|+.|||++-+...++
T Consensus 239 G~~~IViGtRSAv-------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~~~ 311 (665)
T PRK14873 239 GQARVVVGTRSAV-------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQALV 311 (665)
T ss_pred CCCcEEEEcceeE-------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHHHH
Confidence 5 79999994333 2357899999999999422 21 1111222 222223456789999999875543333
Q ss_pred HHHhCCCeEEEecc--cccccccceEEEEecC-----CCc----chHHHHHHhcCCcCCCCCEEEEecccccH-------
Q 003910 422 REILSDPVRVTVGE--VGMANEDITQVVHVIP-----SDA----EKLPWLLEKLPGMIDDGDVLVFASKKTTV------- 483 (787)
Q Consensus 422 ~~~l~~p~~i~v~~--~~~~~~~i~q~~~~~~-----~~~----~k~~~L~~~L~~~~~~~kvLVF~~s~~~a------- 483 (787)
..- ....+.... .....+.| +.+..-. ... .--..+++.+.+.+..+++|||+|.+-.+
T Consensus 312 ~~g--~~~~~~~~~~~~~~~~P~v-~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~gqvll~lnRrGyap~l~C~~ 388 (665)
T PRK14873 312 ESG--WAHDLVAPRPVVRARAPRV-RALGDSGLALERDPAARAARLPSLAFRAARDALEHGPVLVQVPRRGYVPSLACAR 388 (665)
T ss_pred hcC--cceeeccccccccCCCCeE-EEEeCchhhhccccccccCccCHHHHHHHHHHHhcCcEEEEecCCCCCCeeEhhh
Confidence 211 111111000 00111111 1111000 000 01124555555555556999999865543
Q ss_pred ----------------------------------------------------HHHHHHHHHc--CCceeeccCCCCHHHH
Q 003910 484 ----------------------------------------------------DEIESQLAQK--GFKAAALHGDKDQASR 509 (787)
Q Consensus 484 ----------------------------------------------------~~l~~~L~~~--g~~v~~lhg~~~~~eR 509 (787)
+++++.|.+. +.++..+. +
T Consensus 389 Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~r~d-------~ 461 (665)
T PRK14873 389 CRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVVTSG-------G 461 (665)
T ss_pred CcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEEEEC-------h
Confidence 3333333332 22333332 2
Q ss_pred HHHHHHhhcCCccEEEEeh----hhhccCCCCCccEEEEecCCC------------CHHHHHHHhhccCCCCCCCcEEEE
Q 003910 510 MEILQKFKSGVYHVLIATD----VAARGLDIKSIKSVVNFDIAR------------DMDMHVHRIGRTGRAGDKDGTAYT 573 (787)
Q Consensus 510 ~~~l~~F~~G~~~VLVaT~----v~~rGlDip~v~~VI~~d~p~------------s~~~y~QriGR~gR~G~~~G~~i~ 573 (787)
+.+++.|. ++.+|||+|. +++ .++..|++.|... ....+.|..||+||.. +.|.+++
T Consensus 462 d~~l~~~~-~~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~-~~G~V~i 534 (665)
T PRK14873 462 DQVVDTVD-AGPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRA-DGGQVVV 534 (665)
T ss_pred HHHHHhhc-cCCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCC-CCCEEEE
Confidence 34788886 5899999998 555 3567777766442 2444478889999976 6788887
Q ss_pred EEcc
Q 003910 574 LVTQ 577 (787)
Q Consensus 574 l~~~ 577 (787)
...+
T Consensus 535 q~~p 538 (665)
T PRK14873 535 VAES 538 (665)
T ss_pred EeCC
Confidence 6533
No 161
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.43 E-value=2.5e-12 Score=151.32 Aligned_cols=126 Identities=21% Similarity=0.266 Sum_probs=100.9
Q ss_pred CCcchHHHHHHhcCCcCC-CCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhh
Q 003910 452 SDAEKLPWLLEKLPGMID-DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVA 530 (787)
Q Consensus 452 ~~~~k~~~L~~~L~~~~~-~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~ 530 (787)
....|+..+++.+..... ..+|||-+.+++..+.|+..|...+++..+|+......+-+-+-+.=+. -.|-|||++|
T Consensus 609 t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~--GaVTIATNMA 686 (1112)
T PRK12901 609 TKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQP--GTVTIATNMA 686 (1112)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCCC--CcEEEeccCc
Confidence 345677777777665543 4599999999999999999999999999999886554443333332233 3599999999
Q ss_pred hccCCCC--------CccEEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEccccH
Q 003910 531 ARGLDIK--------SIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (787)
Q Consensus 531 ~rGlDip--------~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~ 580 (787)
+||.||. +-=|||--..+.|..-.-|-.||+||.| .+|.+.+|++-+|.
T Consensus 687 GRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQG-DPGsS~f~lSLEDd 743 (1112)
T PRK12901 687 GRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQG-DPGSSQFYVSLEDN 743 (1112)
T ss_pred CCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCC-CCCcceEEEEcccH
Confidence 9999998 4468999999999999999999999999 68999999887764
No 162
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.35 E-value=3.3e-12 Score=137.45 Aligned_cols=156 Identities=21% Similarity=0.223 Sum_probs=96.3
Q ss_pred HHHHHHHHHHc-------------CCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHH
Q 003910 251 IQCQALPIILS-------------GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLE 317 (787)
Q Consensus 251 ~Q~~ai~~il~-------------grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~ 317 (787)
+|.+++.+++. .+.+|++.++|+|||++.+. ++.++....... ....+|||||. .+..||..+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~-~~~~l~~~~~~~--~~~~~LIv~P~-~l~~~W~~E 76 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIA-LISYLKNEFPQR--GEKKTLIVVPS-SLLSQWKEE 76 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHH-HHHHHHHCCTTS--S-S-EEEEE-T-TTHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhh-hhhhhhhccccc--cccceeEeecc-chhhhhhhh
Confidence 68999988853 35799999999999998544 444444332110 11248999999 777899999
Q ss_pred HHHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHH---HhccccccceeEEEEechhhhhcCCChHHHH
Q 003910 318 TKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDML---KMKALTMSRVTYLVLDEADRMFDLGFEPQIR 394 (787)
Q Consensus 318 ~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l---~~~~~~l~~i~~lViDEah~m~~~~f~~~i~ 394 (787)
+.+++....+++..+.+...............+|+|+|++.+.... ....+.-..+++|||||+|.+.+. .....
T Consensus 77 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~--~s~~~ 154 (299)
T PF00176_consen 77 IEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNK--DSKRY 154 (299)
T ss_dssp HHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTT--TSHHH
T ss_pred hccccccccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEecccccccc--ccccc
Confidence 9999865566666666554122222223345899999999998111 011122245999999999998654 44455
Q ss_pred HHhhhcCCCceEEEEeccC
Q 003910 395 SIVGQIRPDRQTLLFSATM 413 (787)
Q Consensus 395 ~il~~~~~~~q~ll~SAT~ 413 (787)
..+..+. ....+++|||+
T Consensus 155 ~~l~~l~-~~~~~lLSgTP 172 (299)
T PF00176_consen 155 KALRKLR-ARYRWLLSGTP 172 (299)
T ss_dssp HHHHCCC-ECEEEEE-SS-
T ss_pred ccccccc-cceEEeecccc
Confidence 5555565 56678899995
No 163
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=99.30 E-value=1.1e-11 Score=138.71 Aligned_cols=106 Identities=24% Similarity=0.391 Sum_probs=89.7
Q ss_pred CCEEEEecccccHHHHHHHHHHc------------------CCceeeccCCCCHHHHHHHHHHhhcC--C-ccEEEEehh
Q 003910 471 GDVLVFASKKTTVDEIESQLAQK------------------GFKAAALHGDKDQASRMEILQKFKSG--V-YHVLIATDV 529 (787)
Q Consensus 471 ~kvLVF~~s~~~a~~l~~~L~~~------------------g~~v~~lhg~~~~~eR~~~l~~F~~G--~-~~VLVaT~v 529 (787)
.++|||.+....++.|.+.|.+. ......+.|..+..+|++.|++|.+- - .-+|++|..
T Consensus 720 ~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstra 799 (1387)
T KOG1016|consen 720 EKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRA 799 (1387)
T ss_pred ceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhcc
Confidence 37999999999999999999875 23456789999999999999999873 2 358899999
Q ss_pred hhccCCCCCccEEEEecCCCCHHHHHHHhhccCCCCCC-CcEEEEEEc
Q 003910 530 AARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDK-DGTAYTLVT 576 (787)
Q Consensus 530 ~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G~~-~G~~i~l~~ 576 (787)
..-|+|+-..+.||+||.-|++.--.|++-|+-|-|++ +-.+|.|+.
T Consensus 800 g~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVm 847 (1387)
T KOG1016|consen 800 GSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVM 847 (1387)
T ss_pred ccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehh
Confidence 99999999999999999999999999999999999943 334455554
No 164
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.28 E-value=2e-10 Score=133.10 Aligned_cols=288 Identities=16% Similarity=0.202 Sum_probs=178.1
Q ss_pred CEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHH
Q 003910 264 DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK 343 (787)
Q Consensus 264 dvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~ 343 (787)
-.++-+|||+|||.+. +..|...++. ....+|+|...+.|+.++...++.. ++.-...|........ .
T Consensus 51 V~vVRSpMGTGKTtaL-i~wLk~~l~~------~~~~VLvVShRrSL~~sL~~rf~~~----~l~gFv~Y~d~~~~~i-~ 118 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTAL-IRWLKDALKN------PDKSVLVVSHRRSLTKSLAERFKKA----GLSGFVNYLDSDDYII-D 118 (824)
T ss_pred eEEEECCCCCCcHHHH-HHHHHHhccC------CCCeEEEEEhHHHHHHHHHHHHhhc----CCCcceeeeccccccc-c
Confidence 3577899999999873 4444443322 3566999999999999998887765 2211112222111100 0
Q ss_pred HHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHHH------HH-HhhhcCCCceEEEEeccCcHH
Q 003910 344 ELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQI------RS-IVGQIRPDRQTLLFSATMPRK 416 (787)
Q Consensus 344 ~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i------~~-il~~~~~~~q~ll~SAT~~~~ 416 (787)
....+-+++..+.|..+. ...+.++++|||||+-.++..=|.+.+ .. +...++....+|++-|++...
T Consensus 119 --~~~~~rLivqIdSL~R~~---~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~ 193 (824)
T PF02399_consen 119 --GRPYDRLIVQIDSLHRLD---GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQ 193 (824)
T ss_pred --ccccCeEEEEehhhhhcc---cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHH
Confidence 012567777777776643 224677999999999977654333222 22 233456677899999999999
Q ss_pred HHHHHHHHhCC-CeEEEecccccccccceEEEEecC-----------------------------------CCcchHHHH
Q 003910 417 VEKLAREILSD-PVRVTVGEVGMANEDITQVVHVIP-----------------------------------SDAEKLPWL 460 (787)
Q Consensus 417 v~~l~~~~l~~-p~~i~v~~~~~~~~~i~q~~~~~~-----------------------------------~~~~k~~~L 460 (787)
.-+++..+..+ ++.+.+.......-.-.+- ..+. ........+
T Consensus 194 tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~-~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~ 272 (824)
T PF02399_consen 194 TVDFLASCRPDENIHVIVNTYASPGFSNRRC-TFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFF 272 (824)
T ss_pred HHHHHHHhCCCCcEEEEEeeeecCCcccceE-EEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHH
Confidence 98888887654 3333332211110000000 0000 001112222
Q ss_pred HHhcCCcCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCc-
Q 003910 461 LEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSI- 539 (787)
Q Consensus 461 ~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v- 539 (787)
-.++..+..+.+|-||+.+...++.+++........+..+++..+..+. +. =++++|+|.|.++..||++...
T Consensus 273 ~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~--W~~~~VviYT~~itvG~Sf~~~H 346 (824)
T PF02399_consen 273 SELLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ES--WKKYDVVIYTPVITVGLSFEEKH 346 (824)
T ss_pred HHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----cc--ccceeEEEEeceEEEEeccchhh
Confidence 3333333345688999999999999999999999999999887766532 22 2468999999999999999754
Q ss_pred -cEEEEecCC----CCHHHHHHHhhccCCCCCCCcEEEEEEcc
Q 003910 540 -KSVVNFDIA----RDMDMHVHRIGRTGRAGDKDGTAYTLVTQ 577 (787)
Q Consensus 540 -~~VI~~d~p----~s~~~y~QriGR~gR~G~~~G~~i~l~~~ 577 (787)
+-|+-|=-| .++.+..|++||+-... ....++.+..
T Consensus 347 F~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~--~~ei~v~~d~ 387 (824)
T PF02399_consen 347 FDSMFAYVKPMSYGPDMVSVYQMLGRVRSLL--DNEIYVYIDA 387 (824)
T ss_pred ceEEEEEecCCCCCCcHHHHHHHHHHHHhhc--cCeEEEEEec
Confidence 334444223 24556899999997765 3555555543
No 165
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.18 E-value=6.7e-11 Score=137.95 Aligned_cols=106 Identities=16% Similarity=0.199 Sum_probs=94.1
Q ss_pred CCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCC-ccE-EEEehhhhccCCCCCccEEEEecCC
Q 003910 471 GDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGV-YHV-LIATDVAARGLDIKSIKSVVNFDIA 548 (787)
Q Consensus 471 ~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~-~~V-LVaT~v~~rGlDip~v~~VI~~d~p 548 (787)
.++|||++....++.+...|...++....+.|.|+...|.+.+..|..+. ..| |++..+...||++..+.||+..|+.
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~ 619 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPW 619 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchh
Confidence 48999999999999999999999999999999999999999999998643 334 5577889999999999999999999
Q ss_pred CCHHHHHHHhhccCCCCCCCcEEEEEEc
Q 003910 549 RDMDMHVHRIGRTGRAGDKDGTAYTLVT 576 (787)
Q Consensus 549 ~s~~~y~QriGR~gR~G~~~G~~i~l~~ 576 (787)
||+..--|.|-|++|.|+.+-+-++.+.
T Consensus 620 wnp~~eeQaidR~hrigq~k~v~v~r~~ 647 (674)
T KOG1001|consen 620 WNPAVEEQAIDRAHRIGQTKPVKVSRFI 647 (674)
T ss_pred cChHHHHHHHHHHHHhcccceeeeeeeh
Confidence 9999999999999999976666555443
No 166
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.11 E-value=8.1e-09 Score=126.55 Aligned_cols=313 Identities=16% Similarity=0.176 Sum_probs=170.0
Q ss_pred CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHH
Q 003910 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF 342 (787)
Q Consensus 263 rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~ 342 (787)
+..+|+.-+|||||++.+. +...+... ...|.++||+-+++|-.|+.+++..+........ ......+.
T Consensus 274 ~~G~IWHtqGSGKTlTm~~-~A~~l~~~-----~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~-----~~~s~~~L 342 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFK-LARLLLEL-----PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP-----KAESTSEL 342 (962)
T ss_pred CceEEEeecCCchHHHHHH-HHHHHHhc-----cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc-----cccCHHHH
Confidence 4699999999999997433 33344343 4578999999999999999999999976432211 22233343
Q ss_pred HH-HhcC-CcEEEeCHHHHHHHHHhcc--ccccceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEeccCcHHHH
Q 003910 343 KE-LKAG-CEIVIATPGRLIDMLKMKA--LTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVE 418 (787)
Q Consensus 343 ~~-l~~~-~dIIV~Tp~~L~~~l~~~~--~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~ 418 (787)
++ +..+ ..|||+|-+.|-..+.... ..-.+--+||+|||||-. +......+ ...-+....++||.|+--.-.
T Consensus 343 k~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ---~G~~~~~~-~~~~~~a~~~gFTGTPi~~~d 418 (962)
T COG0610 343 KELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ---YGELAKLL-KKALKKAIFIGFTGTPIFKED 418 (962)
T ss_pred HHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc---ccHHHHHH-HHHhccceEEEeeCCcccccc
Confidence 43 4433 4899999999988775531 112233468999999843 23222222 222334789999999632111
Q ss_pred HH-HHHHhCCCeEEEecccccccc---cceEEEE-ecC---CC------------------------------------c
Q 003910 419 KL-AREILSDPVRVTVGEVGMANE---DITQVVH-VIP---SD------------------------------------A 454 (787)
Q Consensus 419 ~l-~~~~l~~p~~i~v~~~~~~~~---~i~q~~~-~~~---~~------------------------------------~ 454 (787)
.. ....+++++..+.-.....-. .+..... .+. .. .
T Consensus 419 ~~tt~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 498 (962)
T COG0610 419 KDTTKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLA 498 (962)
T ss_pred ccchhhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcch
Confidence 11 122233322221110000000 0000000 000 00 0
Q ss_pred ch----HHHHHHhcCC-cCCCCCEEEEecccccHHHHHHHHHHcC---------------------Cceeec--cCCCCH
Q 003910 455 EK----LPWLLEKLPG-MIDDGDVLVFASKKTTVDEIESQLAQKG---------------------FKAAAL--HGDKDQ 506 (787)
Q Consensus 455 ~k----~~~L~~~L~~-~~~~~kvLVF~~s~~~a~~l~~~L~~~g---------------------~~v~~l--hg~~~~ 506 (787)
.+ ...++..... .....++++.|.++..+..+.+.+.... ...... |.. ..
T Consensus 499 ~r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~ 577 (962)
T COG0610 499 VRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAK-LK 577 (962)
T ss_pred HHHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHH-HH
Confidence 00 0011122222 2234577877777775554444433210 000000 111 12
Q ss_pred HHHHHHHHHh--hcCCccEEEEehhhhccCCCCCccEEEEecCCCCHHHHHHHhhccCCCC-C--CCcEEEEEEccccHH
Q 003910 507 ASRMEILQKF--KSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAG-D--KDGTAYTLVTQKEAR 581 (787)
Q Consensus 507 ~eR~~~l~~F--~~G~~~VLVaT~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G-~--~~G~~i~l~~~~d~~ 581 (787)
..+......| .....++||.++++-.|.|.|.++++. +|-|.-....+|++.||.|.- . ..|..+.|+. -..
T Consensus 578 ~~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g--l~e 654 (962)
T COG0610 578 DEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG--LKE 654 (962)
T ss_pred HHHhhhhhhhcCcCCCCCEEEEEccccccCCccccceEE-eccccccchHHHHHHHhccCCCCCCCCcEEEECcc--hHH
Confidence 2334444443 446789999999999999999887666 566677778899999999975 2 2345555544 333
Q ss_pred HHHHHHHHHHHcC
Q 003910 582 FAGELVNSLIAAG 594 (787)
Q Consensus 582 ~~~~l~~~l~~~~ 594 (787)
.+...++.+...+
T Consensus 655 ~l~~Al~~Y~~~~ 667 (962)
T COG0610 655 ALKKALKLYSNEG 667 (962)
T ss_pred HHHHHHHHhhccc
Confidence 3333344443333
No 167
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.07 E-value=1.7e-09 Score=115.75 Aligned_cols=73 Identities=21% Similarity=0.189 Sum_probs=58.1
Q ss_pred CCcHHHHHHH----HHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003910 247 KPTSIQCQAL----PIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (787)
Q Consensus 247 ~ptp~Q~~ai----~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~ 321 (787)
.|+|.|.+.+ ..+..+.++|+.+|||+|||++|++|++.++...... ..+.+++|+++|..+..|...+++++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~--~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER--IQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc--ccccceeEEeccHHHHHHHHHHHHhc
Confidence 3699999955 4455789999999999999999999999887653211 02347899999999999988888765
No 168
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.07 E-value=1.7e-09 Score=115.75 Aligned_cols=73 Identities=21% Similarity=0.189 Sum_probs=58.1
Q ss_pred CCcHHHHHHH----HHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003910 247 KPTSIQCQAL----PIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (787)
Q Consensus 247 ~ptp~Q~~ai----~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~ 321 (787)
.|+|.|.+.+ ..+..+.++|+.+|||+|||++|++|++.++...... ..+.+++|+++|..+..|...+++++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~--~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER--IQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc--ccccceeEEeccHHHHHHHHHHHHhc
Confidence 3699999955 4455789999999999999999999999887653211 02347899999999999988888765
No 169
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.06 E-value=6.7e-10 Score=126.85 Aligned_cols=311 Identities=19% Similarity=0.234 Sum_probs=185.7
Q ss_pred HHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEEC
Q 003910 255 ALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYG 334 (787)
Q Consensus 255 ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~g 334 (787)
.+..+...+-++|-++||+|||..+.--+|..++...... ...+.+.-|+|..+.-+.+.+.+- -+-.++-.+|
T Consensus 386 i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~---~~na~v~qprrisaisiaerva~e---r~e~~g~tvg 459 (1282)
T KOG0921|consen 386 ILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGA---SFNAVVSQPRRISAISLAERVANE---RGEEVGETCG 459 (1282)
T ss_pred HHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccc---cccceeccccccchHHHHHHHHHh---hHHhhccccc
Confidence 3344445567888999999999999988888887654222 234788899998887776554432 1222222222
Q ss_pred CCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhh-cCCChHHHHHHhhhcCCCceEEEEeccC
Q 003910 335 GMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF-DLGFEPQIRSIVGQIRPDRQTLLFSATM 413 (787)
Q Consensus 335 g~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~-~~~f~~~i~~il~~~~~~~q~ll~SAT~ 413 (787)
...+...... ..---|.+||-+.|+.++.. .+..+.++|+||.|... +..|...+..-+..+-++.+.+++|||+
T Consensus 460 y~vRf~Sa~p-rpyg~i~fctvgvllr~~e~---glrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsatI 535 (1282)
T KOG0921|consen 460 YNVRFDSATP-RPYGSIMFCTVGVLLRMMEN---GLRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSATI 535 (1282)
T ss_pred cccccccccc-ccccceeeeccchhhhhhhh---cccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhccc
Confidence 2222211100 11246899999999998865 35578899999999532 2233333333233333455555666665
Q ss_pred cHH--------------------HHHHHHHHhCCCeEEEecccccc-c-----------------ccceEEEEe------
Q 003910 414 PRK--------------------VEKLAREILSDPVRVTVGEVGMA-N-----------------EDITQVVHV------ 449 (787)
Q Consensus 414 ~~~--------------------v~~l~~~~l~~p~~i~v~~~~~~-~-----------------~~i~q~~~~------ 449 (787)
... ++.++...+..+........... . .++...-.+
T Consensus 536 dTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~ 615 (1282)
T KOG0921|consen 536 DTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRT 615 (1282)
T ss_pred chhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchhhh
Confidence 322 11222222211111111000000 0 000000000
Q ss_pred ---cCCCcchHHHHHHh----cCCcCCCCCEEEEecccccHHHHHHHHHHc-------CCceeeccCCCCHHHHHHHHHH
Q 003910 450 ---IPSDAEKLPWLLEK----LPGMIDDGDVLVFASKKTTVDEIESQLAQK-------GFKAAALHGDKDQASRMEILQK 515 (787)
Q Consensus 450 ---~~~~~~k~~~L~~~----L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~-------g~~v~~lhg~~~~~eR~~~l~~ 515 (787)
..+.......|++. +....-.+-||||.+--.....|..+|... .+.+..+|..+...+..++.+.
T Consensus 616 am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~ 695 (1282)
T KOG0921|consen 616 AMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEP 695 (1282)
T ss_pred hhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCc
Confidence 00000111122222 222223467999999999999888888653 5788999999999888899999
Q ss_pred hhcCCccEEEEehhhhccCCCCCccEEEEecC------------------CCCHHHHHHHhhccCCCCCCCcEEEEEEcc
Q 003910 516 FKSGVYHVLIATDVAARGLDIKSIKSVVNFDI------------------ARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ 577 (787)
Q Consensus 516 F~~G~~~VLVaT~v~~rGlDip~v~~VI~~d~------------------p~s~~~y~QriGR~gR~G~~~G~~i~l~~~ 577 (787)
...|..++++.|.++..-+.|.++..||+.+. +.+....+||.||+||. ++|.|+.+.+.
T Consensus 696 ~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv--R~G~~f~lcs~ 773 (1282)
T KOG0921|consen 696 VPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV--RPGFCFHLCSR 773 (1282)
T ss_pred ccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee--cccccccccHH
Confidence 99999999999999999999888777775332 22455668999999997 57999988754
No 170
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.05 E-value=3.4e-10 Score=105.62 Aligned_cols=135 Identities=16% Similarity=0.194 Sum_probs=79.5
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHH
Q 003910 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ 341 (787)
Q Consensus 262 grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~ 341 (787)
|+-.++-..+|+|||.-.+.-++...+. .+.++|||.|||.++..+.+.++.. .+++.. . ...
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~-------~~~rvLvL~PTRvva~em~~aL~~~----~~~~~t--~-~~~--- 66 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIK-------RRLRVLVLAPTRVVAEEMYEALKGL----PVRFHT--N-ARM--- 66 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHH-------TT--EEEEESSHHHHHHHHHHTTTS----SEEEES--T-TSS---
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHH-------ccCeEEEecccHHHHHHHHHHHhcC----CcccCc--e-eee---
Confidence 4456788899999998755555554433 3677999999999999887776543 333321 1 110
Q ss_pred HHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHhhhc--CCCceEEEEeccCcHHH
Q 003910 342 FKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI--RPDRQTLLFSATMPRKV 417 (787)
Q Consensus 342 ~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~--~~~~q~ll~SAT~~~~v 417 (787)
.....+.-|-|+|+..+...+.. ...+.++++||+||||-+--. .-..+..+..+ .....+|++|||+|-..
T Consensus 67 -~~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~--sIA~rg~l~~~~~~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 67 -RTHFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPT--SIAARGYLRELAESGEAKVIFMTATPPGSE 140 (148)
T ss_dssp -----SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHH--HHHHHHHHHHHHHTTS-EEEEEESS-TT--
T ss_pred -ccccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccCCHH--HHhhheeHHHhhhccCeeEEEEeCCCCCCC
Confidence 02234577889999999888766 556789999999999963211 01111222222 23457999999998653
No 171
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.97 E-value=9.8e-09 Score=120.02 Aligned_cols=318 Identities=20% Similarity=0.243 Sum_probs=192.2
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcC
Q 003910 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (787)
Q Consensus 247 ~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~ 326 (787)
-.+|+-.|.+-.+.-...-|....||-|||++..+|+....+. |..+.||...--||.--.+++.++...+|
T Consensus 78 g~~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~--------gkgVhvVTvNdYLA~RDae~m~~l~~~LG 149 (822)
T COG0653 78 GMRHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALA--------GKGVHVVTVNDYLARRDAEWMGPLYEFLG 149 (822)
T ss_pred CCChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcC--------CCCcEEeeehHHhhhhCHHHHHHHHHHcC
Confidence 3445556667677777788999999999999999998665433 45578888888999999999999999999
Q ss_pred ceEEEEECCCChHHHHHHHhcCCcEEEeCHHHH-HHHHH------hccccccceeEEEEechhhhhc---------CC--
Q 003910 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRL-IDMLK------MKALTMSRVTYLVLDEADRMFD---------LG-- 388 (787)
Q Consensus 327 i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L-~~~l~------~~~~~l~~i~~lViDEah~m~~---------~~-- 388 (787)
+.|.+...+.+..+..... .|||..+|-..| .+.+. .....+....|.|+||+|-|+- .|
T Consensus 150 lsvG~~~~~m~~~ek~~aY--~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~~ 227 (822)
T COG0653 150 LSVGVILAGMSPEEKRAAY--ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGPA 227 (822)
T ss_pred CceeeccCCCChHHHHHHH--hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeeccc
Confidence 9999999998766554433 489999997765 12221 1223345688999999997631 01
Q ss_pred -C----hHHHHHHhhhcCCC--------ceEEEEecc-C-----------------------------------------
Q 003910 389 -F----EPQIRSIVGQIRPD--------RQTLLFSAT-M----------------------------------------- 413 (787)
Q Consensus 389 -f----~~~i~~il~~~~~~--------~q~ll~SAT-~----------------------------------------- 413 (787)
. ...+..++..+... .+.|.++-. +
T Consensus 228 ~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYI 307 (822)
T COG0653 228 EDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYI 307 (822)
T ss_pred ccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeE
Confidence 1 12222222222111 111111111 0
Q ss_pred --------------------------cHHH--------------------HHHHH--------------------HHhCC
Q 003910 414 --------------------------PRKV--------------------EKLAR--------------------EILSD 427 (787)
Q Consensus 414 --------------------------~~~v--------------------~~l~~--------------------~~l~~ 427 (787)
...+ +.+.+ .++..
T Consensus 308 Vrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~l 387 (822)
T COG0653 308 VRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYGL 387 (822)
T ss_pred EecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccCC
Confidence 0000 00000 00000
Q ss_pred CeEEEecccccccccceEEEEecCCCcchHHHHHHhcCCcC-CCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCH
Q 003910 428 PVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQ 506 (787)
Q Consensus 428 p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~ 506 (787)
-+.+.....+... +...-.+......|+..++..+.... ...+|||-..+++..+.+.+.|.+.+++..+|...-..
T Consensus 388 ~vv~iPTnrp~~R--~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~ 465 (822)
T COG0653 388 DVVVIPTNRPIIR--LDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHA 465 (822)
T ss_pred ceeeccCCCcccC--CCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccHH
Confidence 0000000000000 01111111234457777776665543 45699999999999999999999999999888876653
Q ss_pred HHHHHHHHHhhcCCccEEEEehhhhccCCCCCcc-----------EEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEE
Q 003910 507 ASRMEILQKFKSGVYHVLIATDVAARGLDIKSIK-----------SVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLV 575 (787)
Q Consensus 507 ~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~-----------~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~ 575 (787)
++.-+-.+.--.--|-|||++|+||-||.--. +||--.--.+-.---|--||+||.| .+|..-.|+
T Consensus 466 --~EA~Iia~AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQG-DpG~S~F~l 542 (822)
T COG0653 466 --REAEIIAQAGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQG-DPGSSRFYL 542 (822)
T ss_pred --HHHHHHhhcCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCC-Ccchhhhhh
Confidence 33333333322335889999999999987433 2333332333333347789999999 578887777
Q ss_pred cccc
Q 003910 576 TQKE 579 (787)
Q Consensus 576 ~~~d 579 (787)
+-.|
T Consensus 543 SleD 546 (822)
T COG0653 543 SLED 546 (822)
T ss_pred hhHH
Confidence 6554
No 172
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.78 E-value=2.1e-07 Score=97.39 Aligned_cols=134 Identities=21% Similarity=0.260 Sum_probs=97.6
Q ss_pred HHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHH
Q 003910 240 ISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETK 319 (787)
Q Consensus 240 l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~ 319 (787)
+.+.--..|++.|..++-.+..|+ |+...||-|||++..+|++.+.+. |..|-||+....||..=++++.
T Consensus 70 ~~r~~g~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~--------G~~V~vvT~NdyLA~RD~~~~~ 139 (266)
T PF07517_consen 70 ARRTLGLRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ--------GKGVHVVTSNDYLAKRDAEEMR 139 (266)
T ss_dssp HHHHTS----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT--------SS-EEEEESSHHHHHHHHHHHH
T ss_pred HHHHcCCcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh--------cCCcEEEeccHHHhhccHHHHH
Confidence 333334568889988887776665 999999999999988888777643 5668889999999999999999
Q ss_pred HHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHH-HHHhc------cccccceeEEEEechhhhh
Q 003910 320 KFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLID-MLKMK------ALTMSRVTYLVLDEADRMF 385 (787)
Q Consensus 320 ~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~-~l~~~------~~~l~~i~~lViDEah~m~ 385 (787)
.++..+|+.+.+++.+.+........ .++|+.+|...|.- .+... ......+.++||||+|.|+
T Consensus 140 ~~y~~LGlsv~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 140 PFYEFLGLSVGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHHHHTT--EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHHHHhhhccccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 99999999999999988754432222 37899999998864 33321 1124678999999999765
No 173
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.65 E-value=3.7e-07 Score=109.27 Aligned_cols=70 Identities=19% Similarity=0.078 Sum_probs=57.4
Q ss_pred HhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEeccCc
Q 003910 345 LKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMP 414 (787)
Q Consensus 345 l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~ 414 (787)
++....|+++||..|..-+..+.+.+..|..|||||||++....-+..+-.++..-.+..-+.+||+.+.
T Consensus 4 ly~~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~ 73 (814)
T TIGR00596 4 VYLEGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPE 73 (814)
T ss_pred HhhcCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCc
Confidence 4455789999999999888888999999999999999998766556666677766666777888888863
No 174
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=98.59 E-value=1.9e-09 Score=124.39 Aligned_cols=78 Identities=24% Similarity=0.400 Sum_probs=64.4
Q ss_pred chHHHHHHhcCCcCCC-CCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhc---CCccEEEEehhh
Q 003910 455 EKLPWLLEKLPGMIDD-GDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKS---GVYHVLIATDVA 530 (787)
Q Consensus 455 ~k~~~L~~~L~~~~~~-~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~---G~~~VLVaT~v~ 530 (787)
.|+..|...++++... .+||||.+.....+.|..++...+ ....+.|.....+|+.+++.|+. ....+|++|.+.
T Consensus 615 ~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~ 693 (696)
T KOG0383|consen 615 GKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAG 693 (696)
T ss_pred HHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccc
Confidence 3455555555555444 499999999999999999999998 99999999999999999999984 467899999987
Q ss_pred hcc
Q 003910 531 ARG 533 (787)
Q Consensus 531 ~rG 533 (787)
+.|
T Consensus 694 g~g 696 (696)
T KOG0383|consen 694 GLG 696 (696)
T ss_pred cCC
Confidence 654
No 175
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.30 E-value=8.7e-06 Score=97.83 Aligned_cols=74 Identities=19% Similarity=0.268 Sum_probs=58.0
Q ss_pred CccEEEEehhhhccCCCCCccEEEEecCCCCHHHHHHHhhccCCCC-CCCc-------E-EEEEEccccHHHHHHHHHHH
Q 003910 520 VYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAG-DKDG-------T-AYTLVTQKEARFAGELVNSL 590 (787)
Q Consensus 520 ~~~VLVaT~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G-~~~G-------~-~i~l~~~~d~~~~~~l~~~l 590 (787)
.+++|++-.++.+|-|.|+|-+++-+....+...-.|-+||..|.- +..| . --++++.....++..|...+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 5789999999999999999999999998889999999999999964 1112 1 22344556778888888877
Q ss_pred HHc
Q 003910 591 IAA 593 (787)
Q Consensus 591 ~~~ 593 (787)
...
T Consensus 581 ~~~ 583 (986)
T PRK15483 581 NSD 583 (986)
T ss_pred Hhh
Confidence 554
No 176
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.27 E-value=3e-07 Score=107.84 Aligned_cols=256 Identities=20% Similarity=0.191 Sum_probs=152.2
Q ss_pred cHHHHHHHHHHHc-CCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCc
Q 003910 249 TSIQCQALPIILS-GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGI 327 (787)
Q Consensus 249 tp~Q~~ai~~il~-grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i 327 (787)
.|+|.+.+..+.. ..++++.+|||+|||++|.+.++..+...| +.++++++|-..|+..-.+.+.+.....|+
T Consensus 929 n~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p------~~kvvyIap~kalvker~~Dw~~r~~~~g~ 1002 (1230)
T KOG0952|consen 929 NPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYP------GSKVVYIAPDKALVKERSDDWSKRDELPGI 1002 (1230)
T ss_pred CCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCC------CccEEEEcCCchhhcccccchhhhcccCCc
Confidence 3445544444332 257899999999999999999888776543 467999999999998887777776655588
Q ss_pred eEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHH--hccccccceeEEEEechhhhhcCCChHHHHHHhh-------
Q 003910 328 RVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLK--MKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVG------- 398 (787)
Q Consensus 328 ~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~--~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~------- 398 (787)
+++-+.|..... ... ....+|+|+||+++..+.. .....+.++..+|+||.|.+... ..+.+..+..
T Consensus 1003 k~ie~tgd~~pd--~~~-v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~-rgPVle~ivsr~n~~s~ 1078 (1230)
T KOG0952|consen 1003 KVIELTGDVTPD--VKA-VREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED-RGPVLEVIVSRMNYISS 1078 (1230)
T ss_pred eeEeccCccCCC--hhh-eecCceEEcccccccCccccccchhhhccccceeecccccccCC-CcceEEEEeeccccCcc
Confidence 888888876554 222 2348999999999988776 34445788999999999976543 3333222221
Q ss_pred hcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEEeccccccc-ccceEEE------EecCCCcchHHHHHHhcCCcCCCC
Q 003910 399 QIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMAN-EDITQVV------HVIPSDAEKLPWLLEKLPGMIDDG 471 (787)
Q Consensus 399 ~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~-~~i~q~~------~~~~~~~~k~~~L~~~L~~~~~~~ 471 (787)
...+..+.+.+|.-+ .+..+++.|+-..+. .+..+... ......+ .+++....+..-....++...+..
T Consensus 1079 ~t~~~vr~~glsta~-~na~dla~wl~~~~~---~nf~~svrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~sp~~ 1154 (1230)
T KOG0952|consen 1079 QTEEPVRYLGLSTAL-ANANDLADWLNIKDM---YNFRPSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTHSPIK 1154 (1230)
T ss_pred ccCcchhhhhHhhhh-hccHHHHHHhCCCCc---CCCCcccccCCceEeecCCCchhcchhhhhcccHHHHHHhcCCCCC
Confidence 222344555554333 344566666544332 11111110 0111111 122222223334455666666777
Q ss_pred CEEEEecccccHH----HHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCC
Q 003910 472 DVLVFASKKTTVD----EIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGV 520 (787)
Q Consensus 472 kvLVF~~s~~~a~----~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~ 520 (787)
++|||+.+.+... .+...+....-+...++ ++..+-+.++...+...
T Consensus 1155 p~lifv~srrqtrlta~~li~~~~~~~~p~~fl~--~de~e~e~~~~~~~d~~ 1205 (1230)
T KOG0952|consen 1155 PVLIFVSSRRQTRLTALDLIASCATEDNPKQFLN--MDELELEIIMSKVRDTN 1205 (1230)
T ss_pred ceEEEeecccccccchHhHHhhccCCCCchhccC--CCHHHHHHHHHHhcccc
Confidence 9999998876643 33333333333334444 33555555565555443
No 177
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.26 E-value=5.8e-06 Score=85.21 Aligned_cols=73 Identities=21% Similarity=0.295 Sum_probs=51.6
Q ss_pred CCcHHHHHHHHHHHcCCC-EEEEccCCCchhHHHHHHHHHHHhcCc-ccccCCCCEEEEEcCcHHHHHHHHHHHHH
Q 003910 247 KPTSIQCQALPIILSGRD-IIGIAKTGSGKTAAFVLPMIVHIMDQP-ELQKEEGPIGVICAPTRELAHQIYLETKK 320 (787)
Q Consensus 247 ~ptp~Q~~ai~~il~grd-vii~a~TGsGKTla~llp~l~~l~~~~-~~~~~~~p~vLIl~PtreLa~Qi~~~~~~ 320 (787)
++.+.|.+|+..++.... .+|.+|.|+|||.+ +..++..++... ......+..+||++|+...+.++.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~-l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTT-LASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHH-HHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHH-HHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 467899999999999998 99999999999964 445555552110 01123467799999999999999888887
No 178
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.14 E-value=0.0002 Score=83.40 Aligned_cols=73 Identities=15% Similarity=0.244 Sum_probs=58.4
Q ss_pred CccEEEEehhhhccCCCCCccEEEEecCCCCHHHHHHHhhccCCCC-CCCcEEE-----------EEEccccHHHHHHHH
Q 003910 520 VYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAG-DKDGTAY-----------TLVTQKEARFAGELV 587 (787)
Q Consensus 520 ~~~VLVaT~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G-~~~G~~i-----------~l~~~~d~~~~~~l~ 587 (787)
..++|.+-.++-+|-|=|+|=+++-+....|...=.|.+||..|.- +..|.-+ +|+...+..++..|+
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~Lq 562 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKALQ 562 (985)
T ss_pred cceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999964 2334333 356667778888777
Q ss_pred HHHHH
Q 003910 588 NSLIA 592 (787)
Q Consensus 588 ~~l~~ 592 (787)
+.+..
T Consensus 563 kEI~~ 567 (985)
T COG3587 563 KEIND 567 (985)
T ss_pred HHHHH
Confidence 66543
No 179
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.12 E-value=2.9e-05 Score=87.46 Aligned_cols=86 Identities=21% Similarity=0.279 Sum_probs=68.9
Q ss_pred HHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHH
Q 003910 238 HAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLE 317 (787)
Q Consensus 238 ~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~ 317 (787)
..+...++.++..-|..|+.++++..-.||++|+|+|||.+. ..++.|+..+ ....+||++|+...+.|+++.
T Consensus 401 ~~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvts-a~IVyhl~~~------~~~~VLvcApSNiAVDqLaeK 473 (935)
T KOG1802|consen 401 RRFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTS-ATIVYHLARQ------HAGPVLVCAPSNIAVDQLAEK 473 (935)
T ss_pred hhhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehh-HHHHHHHHHh------cCCceEEEcccchhHHHHHHH
Confidence 355667888999999999999999999999999999999874 4455555443 344589999999999999888
Q ss_pred HHHHhhhcCceEEEEEC
Q 003910 318 TKKFAKSHGIRVSAVYG 334 (787)
Q Consensus 318 ~~~~~~~~~i~v~~~~g 334 (787)
+.+. +++|+-+..
T Consensus 474 Ih~t----gLKVvRl~a 486 (935)
T KOG1802|consen 474 IHKT----GLKVVRLCA 486 (935)
T ss_pred HHhc----CceEeeeeh
Confidence 8775 677766554
No 180
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.11 E-value=1.1e-05 Score=81.49 Aligned_cols=124 Identities=19% Similarity=0.198 Sum_probs=73.5
Q ss_pred CCcHHHHHHHHHHHcCC--CEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhh
Q 003910 247 KPTSIQCQALPIILSGR--DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS 324 (787)
Q Consensus 247 ~ptp~Q~~ai~~il~gr--dvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~ 324 (787)
++++-|.+++..++... -+++.++.|+|||.+ +..+...+.. .+..+++++||...+..+.+.+
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~-------~g~~v~~~apT~~Aa~~L~~~~------ 66 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEA-------AGKRVIGLAPTNKAAKELREKT------ 66 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHH-------TT--EEEEESSHHHHHHHHHHH------
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHh-------CCCeEEEECCcHHHHHHHHHhh------
Confidence 37889999999997554 367789999999975 3444444422 3577999999998887654441
Q ss_pred cCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccc----cccceeEEEEechhhhhcCCChHHHHHHhhhc
Q 003910 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKAL----TMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI 400 (787)
Q Consensus 325 ~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~----~l~~i~~lViDEah~m~~~~f~~~i~~il~~~ 400 (787)
++.+ .|-..++........ .+...++||||||-.+. ...+..++..+
T Consensus 67 -~~~a------------------------~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~ll~~~ 117 (196)
T PF13604_consen 67 -GIEA------------------------QTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLARLLRLA 117 (196)
T ss_dssp -TS-E------------------------EEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHHHHHHS
T ss_pred -Ccch------------------------hhHHHHHhcCCcccccccccCCcccEEEEecccccC----HHHHHHHHHHH
Confidence 2222 222222221111111 15566799999999754 34667777777
Q ss_pred CC-CceEEEEeccC
Q 003910 401 RP-DRQTLLFSATM 413 (787)
Q Consensus 401 ~~-~~q~ll~SAT~ 413 (787)
.. ..++|++.=+.
T Consensus 118 ~~~~~klilvGD~~ 131 (196)
T PF13604_consen 118 KKSGAKLILVGDPN 131 (196)
T ss_dssp -T-T-EEEEEE-TT
T ss_pred HhcCCEEEEECCcc
Confidence 65 66777777663
No 181
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.09 E-value=7.1e-05 Score=76.15 Aligned_cols=152 Identities=16% Similarity=0.248 Sum_probs=100.7
Q ss_pred CCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHc---CCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEE
Q 003910 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILS---GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIG 301 (787)
Q Consensus 225 ~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~---grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~v 301 (787)
..|.....|..|+=.+... -..++.|.+....+.+ +.+.+...-||.|||.+ ++|++..++.+. ...+
T Consensus 3 ~~w~p~~~P~wLl~E~e~~--iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg------~~Lv 73 (229)
T PF12340_consen 3 RNWDPMEYPDWLLFEIESN--ILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADG------SRLV 73 (229)
T ss_pred CCCCchhChHHHHHHHHcC--ceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCC------CcEE
Confidence 3566666777776666533 4689999999999885 57999999999999987 899999887652 3456
Q ss_pred EEEcCcHHHHHHHHHHHHHHhhhc-CceEEEEEC--CCChH----HHHH----HHhcCCcEEEeCHHHHHHHHHhc----
Q 003910 302 VICAPTRELAHQIYLETKKFAKSH-GIRVSAVYG--GMSKL----DQFK----ELKAGCEIVIATPGRLIDMLKMK---- 366 (787)
Q Consensus 302 LIl~PtreLa~Qi~~~~~~~~~~~-~i~v~~~~g--g~~~~----~~~~----~l~~~~dIIV~Tp~~L~~~l~~~---- 366 (787)
.+++|. .|..|....+...+... +-++..+-- ..... ..+. +......|+++||+.++.+....
T Consensus 74 rviVpk-~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l 152 (229)
T PF12340_consen 74 RVIVPK-ALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERL 152 (229)
T ss_pred EEEcCH-HHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHH
Confidence 778885 79999988888766532 323322211 11111 1122 22345679999999987654221
Q ss_pred ---c-----------ccccceeEEEEechhhhhc
Q 003910 367 ---A-----------LTMSRVTYLVLDEADRMFD 386 (787)
Q Consensus 367 ---~-----------~~l~~i~~lViDEah~m~~ 386 (787)
. ..+.....-|+||+|.++.
T Consensus 153 ~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 153 QDGKPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred HhcCHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 0 0133445579999998665
No 182
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.08 E-value=3e-05 Score=81.65 Aligned_cols=168 Identities=13% Similarity=0.117 Sum_probs=105.0
Q ss_pred cCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHc----------CCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCC
Q 003910 230 CGFSTQLMHAISKQGYEKPTSIQCQALPIILS----------GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGP 299 (787)
Q Consensus 230 ~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~----------grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p 299 (787)
+.|++.++.. ..++..|.+++-...+ +..+++-..||.||--+..-.|+..++.. ..
T Consensus 26 ~~lp~~~~~~------g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G-------r~ 92 (303)
T PF13872_consen 26 LHLPEEVIDS------GLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG-------RK 92 (303)
T ss_pred cCCCHHHHhc------ccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC-------CC
Confidence 3666655432 3578889998876652 35688899999999776555556655432 34
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhc---cccc------
Q 003910 300 IGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK---ALTM------ 370 (787)
Q Consensus 300 ~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~---~~~l------ 370 (787)
++|+|..+..|.....+.++.+... .+.+..+.. ...-....-...||++||..|...-... ...|
T Consensus 93 r~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~----~~~~~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W 167 (303)
T PF13872_consen 93 RAVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNK----FKYGDIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDW 167 (303)
T ss_pred ceEEEECChhhhhHHHHHHHHhCCC-cccceechh----hccCcCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHH
Confidence 5899999999998888888876432 233322221 0000001123569999999998865321 1111
Q ss_pred ---cceeEEEEechhhhhcCCCh--------HHHHHHhhhcCCCceEEEEeccCcHH
Q 003910 371 ---SRVTYLVLDEADRMFDLGFE--------PQIRSIVGQIRPDRQTLLFSATMPRK 416 (787)
Q Consensus 371 ---~~i~~lViDEah~m~~~~f~--------~~i~~il~~~~~~~q~ll~SAT~~~~ 416 (787)
..-.+|||||||++.+..-. ..+..+-+.+ |+.+++.+|||-..+
T Consensus 168 ~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~L-P~ARvvY~SATgase 223 (303)
T PF13872_consen 168 CGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRL-PNARVVYASATGASE 223 (303)
T ss_pred HhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhC-CCCcEEEecccccCC
Confidence 12358999999999876431 2333444555 455699999997544
No 183
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=98.03 E-value=0.00056 Score=81.16 Aligned_cols=68 Identities=18% Similarity=0.224 Sum_probs=54.2
Q ss_pred CCCcHHHHHHHHHHHcC-CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003910 246 EKPTSIQCQALPIILSG-RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (787)
Q Consensus 246 ~~ptp~Q~~ai~~il~g-rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~ 321 (787)
..+.+.|..|+..++.. ..+++.+|+|+|||.+ +..++.++.. .++++|+++||...+.++.+.+...
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t-~~~ii~~~~~-------~g~~VLv~a~sn~Avd~l~e~l~~~ 224 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRT-LVELIRQLVK-------RGLRVLVTAPSNIAVDNLLERLALC 224 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHH-HHHHHHHHHH-------cCCCEEEEcCcHHHHHHHHHHHHhC
Confidence 46799999999999876 5788999999999976 4444555433 2557999999999999998877653
No 184
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.84 E-value=2e-05 Score=77.44 Aligned_cols=78 Identities=23% Similarity=0.373 Sum_probs=58.4
Q ss_pred CCCEEEEecccccHHHHHHHHHHcCC--ceeeccCCCCHHHHHHHHHHhhcCCccEEEEeh--hhhccCCCCC--ccEEE
Q 003910 470 DGDVLVFASKKTTVDEIESQLAQKGF--KAAALHGDKDQASRMEILQKFKSGVYHVLIATD--VAARGLDIKS--IKSVV 543 (787)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~g~--~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~--v~~rGlDip~--v~~VI 543 (787)
.+++|||++++..++.+.+.|..... .+.++.. ...++..+++.|+.+.-.||+++. .+.+|+|+++ ++.||
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vi 86 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVI 86 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhheee
Confidence 48999999999999999999976531 1222222 355788999999999999999998 8999999997 88999
Q ss_pred EecCCC
Q 003910 544 NFDIAR 549 (787)
Q Consensus 544 ~~d~p~ 549 (787)
...+|.
T Consensus 87 i~glPf 92 (167)
T PF13307_consen 87 IVGLPF 92 (167)
T ss_dssp EES---
T ss_pred ecCCCC
Confidence 988874
No 185
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.84 E-value=6.6e-05 Score=75.70 Aligned_cols=146 Identities=16% Similarity=0.192 Sum_probs=75.3
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHH-------HHHHH
Q 003910 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQ-------IYLET 318 (787)
Q Consensus 246 ~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Q-------i~~~~ 318 (787)
...++.|..++..++...-+++.++.|+|||+.++..++..+... .-.+++|+-|+.+.... ..+.+
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g------~~~kiii~Rp~v~~~~~lGflpG~~~eK~ 76 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEG------EYDKIIITRPPVEAGEDLGFLPGDLEEKM 76 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTT------S-SEEEEEE-S--TT----SS--------
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhC------CCcEEEEEecCCCCccccccCCCCHHHHH
Confidence 456889999999999888899999999999999888888877552 23457777777643111 11111
Q ss_pred HHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHhh
Q 003910 319 KKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVG 398 (787)
Q Consensus 319 ~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~ 398 (787)
.-|+...- . .............+.....|-+..+.-+.- ..+. -.+||||||+.+. ..++..++.
T Consensus 77 ~p~~~p~~-d---~l~~~~~~~~~~~~~~~~~Ie~~~~~~iRG------rt~~-~~~iIvDEaQN~t----~~~~k~ilT 141 (205)
T PF02562_consen 77 EPYLRPIY-D---ALEELFGKEKLEELIQNGKIEIEPLAFIRG------RTFD-NAFIIVDEAQNLT----PEELKMILT 141 (205)
T ss_dssp -TTTHHHH-H---HHTTTS-TTCHHHHHHTTSEEEEEGGGGTT--------B--SEEEEE-SGGG------HHHHHHHHT
T ss_pred HHHHHHHH-H---HHHHHhChHhHHHHhhcCeEEEEehhhhcC------cccc-ceEEEEecccCCC----HHHHHHHHc
Confidence 11111000 0 000000111223333344555555322211 1122 3789999999854 568899999
Q ss_pred hcCCCceEEEEecc
Q 003910 399 QIRPDRQTLLFSAT 412 (787)
Q Consensus 399 ~~~~~~q~ll~SAT 412 (787)
++..+.+++++.-+
T Consensus 142 R~g~~skii~~GD~ 155 (205)
T PF02562_consen 142 RIGEGSKIIITGDP 155 (205)
T ss_dssp TB-TT-EEEEEE--
T ss_pred ccCCCcEEEEecCc
Confidence 99988888887655
No 186
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.77 E-value=0.00024 Score=83.16 Aligned_cols=143 Identities=20% Similarity=0.213 Sum_probs=90.9
Q ss_pred cHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCce
Q 003910 249 TSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIR 328 (787)
Q Consensus 249 tp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~ 328 (787)
.++|+.++..++..+-+++.++.|+|||.+ +..++..+...... ...+.+++++||--.|..+.+.+..........
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~-v~~ll~~l~~~~~~--~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~ 223 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTT-VARLLLALVKQSPK--QGKLRIALAAPTGKAAARLAESLRKAVKNLAAA 223 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHH-HHHHHHHHHHhccc--cCCCcEEEECCcHHHHHHHHHHHHhhhcccccc
Confidence 379999999999999999999999999975 44444444332110 113568999999988888777666543211110
Q ss_pred EEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHh------ccccccceeEEEEechhhhhcCCChHHHHHHhhhcCC
Q 003910 329 VSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM------KALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRP 402 (787)
Q Consensus 329 v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~------~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~ 402 (787)
. .+.....+-..|-.+|+..... ...+.-.+++||||||-++- ...+..++..+++
T Consensus 224 ---------~-----~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----~~l~~~ll~al~~ 285 (586)
T TIGR01447 224 ---------E-----ALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----LPLMAKLLKALPP 285 (586)
T ss_pred ---------h-----hhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----HHHHHHHHHhcCC
Confidence 0 0011112224454444433211 11123367999999999543 4467778888888
Q ss_pred CceEEEEecc
Q 003910 403 DRQTLLFSAT 412 (787)
Q Consensus 403 ~~q~ll~SAT 412 (787)
..++|++.=.
T Consensus 286 ~~rlIlvGD~ 295 (586)
T TIGR01447 286 NTKLILLGDK 295 (586)
T ss_pred CCEEEEECCh
Confidence 9999988766
No 187
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.76 E-value=0.00022 Score=83.65 Aligned_cols=143 Identities=21% Similarity=0.232 Sum_probs=91.0
Q ss_pred CcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCc
Q 003910 248 PTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGI 327 (787)
Q Consensus 248 ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i 327 (787)
..++|+.|+...+..+-++|.+++|+|||.+ +..++..+.... ......+++++||..-|..+.+.+.......++
T Consensus 153 ~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~-v~~ll~~l~~~~---~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~ 228 (615)
T PRK10875 153 EVDWQKVAAAVALTRRISVISGGPGTGKTTT-VAKLLAALIQLA---DGERCRIRLAAPTGKAAARLTESLGKALRQLPL 228 (615)
T ss_pred CCHHHHHHHHHHhcCCeEEEEeCCCCCHHHH-HHHHHHHHHHhc---CCCCcEEEEECCcHHHHHHHHHHHHhhhhcccc
Confidence 3589999999999999999999999999976 344444443321 112356888999999998888777654432221
Q ss_pred eEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHH------hccccccceeEEEEechhhhhcCCChHHHHHHhhhcC
Q 003910 328 RVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLK------MKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIR 401 (787)
Q Consensus 328 ~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~------~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~~ 401 (787)
. . .+......-..|-.+|+.... ....+.-.+++||||||-++ + ...+..++..++
T Consensus 229 ~-----------~---~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv-d---~~lm~~ll~al~ 290 (615)
T PRK10875 229 T-----------D---EQKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV-D---LPMMARLIDALP 290 (615)
T ss_pred c-----------h---hhhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcc-c---HHHHHHHHHhcc
Confidence 0 0 000001112334344433211 11112335689999999964 3 456778888899
Q ss_pred CCceEEEEecc
Q 003910 402 PDRQTLLFSAT 412 (787)
Q Consensus 402 ~~~q~ll~SAT 412 (787)
+..++|++.=.
T Consensus 291 ~~~rlIlvGD~ 301 (615)
T PRK10875 291 PHARVIFLGDR 301 (615)
T ss_pred cCCEEEEecch
Confidence 99999988766
No 188
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.73 E-value=0.00013 Score=80.72 Aligned_cols=108 Identities=19% Similarity=0.216 Sum_probs=68.3
Q ss_pred CEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHH
Q 003910 264 DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK 343 (787)
Q Consensus 264 dvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~ 343 (787)
-+||.+..|||||+. ++-++..+.. ...+..++++++...|...+...+......
T Consensus 3 v~~I~G~aGTGKTvl-a~~l~~~l~~-----~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~------------------- 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVL-ALNLAKELQN-----SEEGKKVLYLCGNHPLRNKLREQLAKKYNP------------------- 57 (352)
T ss_pred EEEEEecCCcCHHHH-HHHHHHHhhc-----cccCCceEEEEecchHHHHHHHHHhhhccc-------------------
Confidence 368899999999987 3444444411 134567899999999998877777654300
Q ss_pred HHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCC-------ChHHHHHHhhh
Q 003910 344 ELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG-------FEPQIRSIVGQ 399 (787)
Q Consensus 344 ~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~-------f~~~i~~il~~ 399 (787)
......+..+..++..+.........+++|||||||+|.... ...++..++..
T Consensus 58 ---~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 58 ---KLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred ---chhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 001223444444444333223456789999999999998731 23566666665
No 189
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.69 E-value=9.5e-05 Score=83.26 Aligned_cols=66 Identities=24% Similarity=0.378 Sum_probs=51.7
Q ss_pred CCCcHHHHHHHHHHHcCCC-EEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHH
Q 003910 246 EKPTSIQCQALPIILSGRD-IIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETK 319 (787)
Q Consensus 246 ~~ptp~Q~~ai~~il~grd-vii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~ 319 (787)
..+.+-|.+|+...++.++ .++.+|+|+|||.+.. -++..++.+ +.++||++||.+.+..+.+.+.
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~Tlv-EiI~qlvk~-------~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLV-EIISQLVKQ-------KKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHH-HHHHHHHHc-------CCeEEEEcCchHHHHHHHHHhc
Confidence 3577899999999998865 6778999999998744 444444443 5779999999999999988533
No 190
>PRK10536 hypothetical protein; Provisional
Probab=97.66 E-value=0.00076 Score=70.03 Aligned_cols=145 Identities=14% Similarity=0.130 Sum_probs=82.6
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHH-------HHHH
Q 003910 244 GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAH-------QIYL 316 (787)
Q Consensus 244 g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~-------Qi~~ 316 (787)
++...+..|...+.++.+...+++.+++|+|||+..+..++..++.. .-.+++|.-|+.+... .+.+
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~------~~~kIiI~RP~v~~ge~LGfLPG~~~e 129 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK------DVDRIIVTRPVLQADEDLGFLPGDIAE 129 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcC------CeeEEEEeCCCCCchhhhCcCCCCHHH
Confidence 44567889999999999988899999999999987666666555432 1334566666643221 1122
Q ss_pred HHHHHhhhc--CceEEEEECCCChHHHHHHHh--cCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHH
Q 003910 317 ETKKFAKSH--GIRVSAVYGGMSKLDQFKELK--AGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQ 392 (787)
Q Consensus 317 ~~~~~~~~~--~i~v~~~~gg~~~~~~~~~l~--~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~ 392 (787)
.+.-|.... .+.. +.+. ..+..+. ....|-|+.... +.-. .| .-.+||||||+++- ..+
T Consensus 130 K~~p~~~pi~D~L~~--~~~~----~~~~~~~~~~~~~Iei~~l~y----mRGr--tl-~~~~vIvDEaqn~~----~~~ 192 (262)
T PRK10536 130 KFAPYFRPVYDVLVR--RLGA----SFMQYCLRPEIGKVEIAPFAY----MRGR--TF-ENAVVILDEAQNVT----AAQ 192 (262)
T ss_pred HHHHHHHHHHHHHHH--HhCh----HHHHHHHHhccCcEEEecHHH----hcCC--cc-cCCEEEEechhcCC----HHH
Confidence 222222110 0000 0111 1222221 123344544322 2211 22 33789999999854 468
Q ss_pred HHHHhhhcCCCceEEEEec
Q 003910 393 IRSIVGQIRPDRQTLLFSA 411 (787)
Q Consensus 393 i~~il~~~~~~~q~ll~SA 411 (787)
+..++..+..+.++|++.-
T Consensus 193 ~k~~ltR~g~~sk~v~~GD 211 (262)
T PRK10536 193 MKMFLTRLGENVTVIVNGD 211 (262)
T ss_pred HHHHHhhcCCCCEEEEeCC
Confidence 8888888888887776543
No 191
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.60 E-value=0.00056 Score=82.40 Aligned_cols=127 Identities=21% Similarity=0.142 Sum_probs=80.9
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhh
Q 003910 245 YEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS 324 (787)
Q Consensus 245 ~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~ 324 (787)
-..+++-|++|+..+...+-+++.+..|+|||.+ +-.++..+... .....+++++||-..|..+.+..
T Consensus 321 ~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~-l~~i~~~~~~~-----~~~~~v~l~ApTg~AA~~L~e~~------ 388 (720)
T TIGR01448 321 RKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTI-TRAIIELAEEL-----GGLLPVGLAAPTGRAAKRLGEVT------ 388 (720)
T ss_pred CCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHH-HHHHHHHHHHc-----CCCceEEEEeCchHHHHHHHHhc------
Confidence 3579999999999999999999999999999975 33344433221 01145788999988876543321
Q ss_pred cCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHH-----hccccccceeEEEEechhhhhcCCChHHHHHHhhh
Q 003910 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLK-----MKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQ 399 (787)
Q Consensus 325 ~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~-----~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~ 399 (787)
+... .|..+|+.... ...-.....++||||||+++- ...+..++..
T Consensus 389 -g~~a------------------------~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd----~~~~~~Ll~~ 439 (720)
T TIGR01448 389 -GLTA------------------------STIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMD----TWLALSLLAA 439 (720)
T ss_pred -CCcc------------------------ccHHHHhhccCCccchhhhhccccCCEEEEeccccCC----HHHHHHHHHh
Confidence 2211 11111111100 000112357899999999754 3456777778
Q ss_pred cCCCceEEEEecc
Q 003910 400 IRPDRQTLLFSAT 412 (787)
Q Consensus 400 ~~~~~q~ll~SAT 412 (787)
+++..++|++.=+
T Consensus 440 ~~~~~rlilvGD~ 452 (720)
T TIGR01448 440 LPDHARLLLVGDT 452 (720)
T ss_pred CCCCCEEEEECcc
Confidence 8888888888766
No 192
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.55 E-value=0.00038 Score=81.43 Aligned_cols=77 Identities=13% Similarity=0.285 Sum_probs=51.1
Q ss_pred CEEEEecccccHHHHHHHHHHc-------CCceeeccCCCCHHHHHHHHHHhhc--------CCccEEEEehhhhccCCC
Q 003910 472 DVLVFASKKTTVDEIESQLAQK-------GFKAAALHGDKDQASRMEILQKFKS--------GVYHVLIATDVAARGLDI 536 (787)
Q Consensus 472 kvLVF~~s~~~a~~l~~~L~~~-------g~~v~~lhg~~~~~eR~~~l~~F~~--------G~~~VLVaT~v~~rGlDi 536 (787)
.+|||.+++...+.+..++... +.+- ++.+-.+..+-.+++..|-+ |.+-+.||-.-+++|||+
T Consensus 563 G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~-l~vEPr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGlDF 641 (945)
T KOG1132|consen 563 GLLIFFPSYPVMDKLITFWQNRGLWERMEKVKK-LVVEPRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGLDF 641 (945)
T ss_pred ceEEeccchHHHHHHHHHHHcchHHHHhhcccC-ceeccCCccchHHHHHHHHHHhhCccccceEEEEEecccccCCCCc
Confidence 4999999999888886665442 1222 23333345555666676644 333456677888999999
Q ss_pred CC--ccEEEEecCCC
Q 003910 537 KS--IKSVVNFDIAR 549 (787)
Q Consensus 537 p~--v~~VI~~d~p~ 549 (787)
.+ .+.||..++|.
T Consensus 642 sD~~~RaVI~tGlPy 656 (945)
T KOG1132|consen 642 SDDNGRAVIITGLPY 656 (945)
T ss_pred cccCCceeEEecCCC
Confidence 86 67888887764
No 193
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.39 E-value=0.00062 Score=71.57 Aligned_cols=84 Identities=23% Similarity=0.431 Sum_probs=67.2
Q ss_pred HHHHHhhcCCccEEEEehhhhccCCCCC--------ccEEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEccc---c
Q 003910 511 EILQKFKSGVYHVLIATDVAARGLDIKS--------IKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQK---E 579 (787)
Q Consensus 511 ~~l~~F~~G~~~VLVaT~v~~rGlDip~--------v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~---d 579 (787)
...+.|++|+..|+|.+++++.|+.+.. -++-|.+.+||+.+..+|.+||++|.|+...-.|.++..+ +
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 5577999999999999999999998764 3456788999999999999999999997667667766543 5
Q ss_pred HHHHHHHHHHHHHcC
Q 003910 580 ARFAGELVNSLIAAG 594 (787)
Q Consensus 580 ~~~~~~l~~~l~~~~ 594 (787)
.+++..+.+.|...+
T Consensus 132 ~Rfas~va~rL~sLg 146 (278)
T PF13871_consen 132 RRFASTVARRLESLG 146 (278)
T ss_pred HHHHHHHHHHHhhcc
Confidence 666666666665433
No 194
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.26 E-value=0.0013 Score=77.67 Aligned_cols=138 Identities=20% Similarity=0.205 Sum_probs=86.4
Q ss_pred ccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCC-EEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCc
Q 003910 229 DCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRD-IIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPT 307 (787)
Q Consensus 229 ~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~grd-vii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~Pt 307 (787)
...+.+.+... -+..+..-|++|+-.++..+| .||.+=+|+|||.+ +..++..+.. .|.++|+.+-|
T Consensus 655 ~~~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTt-I~~LIkiL~~-------~gkkVLLtsyT 722 (1100)
T KOG1805|consen 655 SKVLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTT-ISLLIKILVA-------LGKKVLLTSYT 722 (1100)
T ss_pred ccccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhh-HHHHHHHHHH-------cCCeEEEEehh
Confidence 34455555543 235688899999999888876 67788999999976 3333333322 36779999999
Q ss_pred HHHHHHHHHHHHHHhhhcCceEEEEECCCChHHH-----------------HHHHhcCCcEEEeCHHHHHHHHHhccccc
Q 003910 308 RELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ-----------------FKELKAGCEIVIATPGRLIDMLKMKALTM 370 (787)
Q Consensus 308 reLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~-----------------~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l 370 (787)
...+..|.-.++.+ ++...-+-.+.....+ +........||.||--.+.+-+ +..
T Consensus 723 hsAVDNILiKL~~~----~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~pl----f~~ 794 (1100)
T KOG1805|consen 723 HSAVDNILIKLKGF----GIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPL----FVN 794 (1100)
T ss_pred hHHHHHHHHHHhcc----CcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchh----hhc
Confidence 88877774444433 3332211111122222 2233445788888865555433 345
Q ss_pred cceeEEEEechhhhhc
Q 003910 371 SRVTYLVLDEADRMFD 386 (787)
Q Consensus 371 ~~i~~lViDEah~m~~ 386 (787)
..++|+|||||-.|..
T Consensus 795 R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 795 RQFDYCIIDEASQILL 810 (1100)
T ss_pred cccCEEEEcccccccc
Confidence 6799999999998754
No 195
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.19 E-value=0.00084 Score=75.39 Aligned_cols=69 Identities=26% Similarity=0.343 Sum_probs=42.8
Q ss_pred cCCcEEEeCHHHHHHHHHhc---ccc---cccee-EEEEechhhhhcC-------------CChHHHHHHhhhcCCCceE
Q 003910 347 AGCEIVIATPGRLIDMLKMK---ALT---MSRVT-YLVLDEADRMFDL-------------GFEPQIRSIVGQIRPDRQT 406 (787)
Q Consensus 347 ~~~dIIV~Tp~~L~~~l~~~---~~~---l~~i~-~lViDEah~m~~~-------------~f~~~i~~il~~~~~~~q~ 406 (787)
.+..|+++|.+.|...+.+. .+. |.... +++-||||++-.. .|+..+...++. .++.-+
T Consensus 80 d~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~-nkd~~~ 158 (812)
T COG3421 80 DAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQ-NKDNLL 158 (812)
T ss_pred CceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhc-CCCcee
Confidence 45789999999998777542 222 33334 3567999997431 133333333332 345668
Q ss_pred EEEeccCcHH
Q 003910 407 LLFSATMPRK 416 (787)
Q Consensus 407 ll~SAT~~~~ 416 (787)
+.+|||.|.+
T Consensus 159 lef~at~~k~ 168 (812)
T COG3421 159 LEFSATIPKE 168 (812)
T ss_pred ehhhhcCCcc
Confidence 8899999843
No 196
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.14 E-value=0.0061 Score=73.84 Aligned_cols=124 Identities=18% Similarity=0.166 Sum_probs=76.5
Q ss_pred CCCcHHHHHHHHHHHcC-CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhh
Q 003910 246 EKPTSIQCQALPIILSG-RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS 324 (787)
Q Consensus 246 ~~ptp~Q~~ai~~il~g-rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~ 324 (787)
..+++-|.+|+..++.+ +-+++.++.|+|||.. +-.+..++.. .+..+++++||--.|..+.+.
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl--l~~i~~~~~~------~g~~V~~~ApTg~Aa~~L~~~------- 415 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM--LKAAREAWEA------AGYRVIGAALSGKAAEGLQAE------- 415 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH--HHHHHHHHHh------CCCeEEEEeCcHHHHHHHHhc-------
Confidence 45899999999999875 5678999999999964 3333333332 367789999997666544321
Q ss_pred cCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHhhhc-CCC
Q 003910 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI-RPD 403 (787)
Q Consensus 325 ~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~-~~~ 403 (787)
.++... |-.+|+..+......+...++||||||-++-. ..+..++... ...
T Consensus 416 ~g~~a~------------------------Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~----~~~~~Ll~~~~~~~ 467 (744)
T TIGR02768 416 SGIESR------------------------TLASLEYAWANGRDLLSDKDVLVIDEAGMVGS----RQMARVLKEAEEAG 467 (744)
T ss_pred cCCcee------------------------eHHHHHhhhccCcccCCCCcEEEEECcccCCH----HHHHHHHHHHHhcC
Confidence 233221 11222111122223456789999999997543 2344555432 356
Q ss_pred ceEEEEecc
Q 003910 404 RQTLLFSAT 412 (787)
Q Consensus 404 ~q~ll~SAT 412 (787)
.++|++.=+
T Consensus 468 ~kliLVGD~ 476 (744)
T TIGR02768 468 AKVVLVGDP 476 (744)
T ss_pred CEEEEECCh
Confidence 677777644
No 197
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.12 E-value=0.0039 Score=76.77 Aligned_cols=124 Identities=19% Similarity=0.130 Sum_probs=78.2
Q ss_pred CCCcHHHHHHHHHHHcCCC-EEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhh
Q 003910 246 EKPTSIQCQALPIILSGRD-IIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS 324 (787)
Q Consensus 246 ~~ptp~Q~~ai~~il~grd-vii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~ 324 (787)
..+++-|.+++..++.+++ +++.+..|+|||.+ +-.++..+ . ..+..+++++||--.|..+.+ .
T Consensus 345 ~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~-e------~~G~~V~~~ApTGkAA~~L~e-------~ 409 (988)
T PRK13889 345 LVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAW-E------AAGYEVRGAALSGIAAENLEG-------G 409 (988)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHH-H------HcCCeEEEecCcHHHHHHHhh-------c
Confidence 4699999999999998765 68899999999975 33333333 2 236779999999766654321 1
Q ss_pred cCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHhhhc-CCC
Q 003910 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI-RPD 403 (787)
Q Consensus 325 ~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~-~~~ 403 (787)
.++.. .|-.+|+.-.......+...++||||||-++.. .++..++... ...
T Consensus 410 tGi~a------------------------~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~~----~~m~~LL~~a~~~g 461 (988)
T PRK13889 410 SGIAS------------------------RTIASLEHGWGQGRDLLTSRDVLVIDEAGMVGT----RQLERVLSHAADAG 461 (988)
T ss_pred cCcch------------------------hhHHHHHhhhcccccccccCcEEEEECcccCCH----HHHHHHHHhhhhCC
Confidence 12211 122222221122233466778999999996543 3555666544 456
Q ss_pred ceEEEEecc
Q 003910 404 RQTLLFSAT 412 (787)
Q Consensus 404 ~q~ll~SAT 412 (787)
.++|++.=+
T Consensus 462 arvVLVGD~ 470 (988)
T PRK13889 462 AKVVLVGDP 470 (988)
T ss_pred CEEEEECCH
Confidence 778887766
No 198
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.07 E-value=0.0023 Score=59.69 Aligned_cols=17 Identities=35% Similarity=0.393 Sum_probs=12.1
Q ss_pred CCCEEEEccCCCchhHH
Q 003910 262 GRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 262 grdvii~a~TGsGKTla 278 (787)
++.+++.|++|+|||..
T Consensus 4 ~~~~~i~G~~G~GKT~~ 20 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTL 20 (131)
T ss_dssp ---EEEEE-TTSSHHHH
T ss_pred CcccEEEcCCCCCHHHH
Confidence 46789999999999976
No 199
>PRK08181 transposase; Validated
Probab=97.07 E-value=0.0053 Score=65.01 Aligned_cols=119 Identities=13% Similarity=0.196 Sum_probs=64.5
Q ss_pred cHHHHHHH----HHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhh
Q 003910 249 TSIQCQAL----PIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS 324 (787)
Q Consensus 249 tp~Q~~ai----~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~ 324 (787)
...|..++ .++-.++++++++|+|+|||... ..+...+... +..+++ ++..+|+.++.....
T Consensus 89 ~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa-~Aia~~a~~~-------g~~v~f-~~~~~L~~~l~~a~~----- 154 (269)
T PRK08181 89 SKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLA-AAIGLALIEN-------GWRVLF-TRTTDLVQKLQVARR----- 154 (269)
T ss_pred CHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHH-HHHHHHHHHc-------CCceee-eeHHHHHHHHHHHHh-----
Confidence 34444444 35668899999999999999642 2333333322 333444 455566655532100
Q ss_pred cCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCC-hHHHHHHhhhcCCC
Q 003910 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGF-EPQIRSIVGQIRPD 403 (787)
Q Consensus 325 ~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f-~~~i~~il~~~~~~ 403 (787)
. .+...++. .+.++++|||||.+.+....+ ...+..+++.....
T Consensus 155 -~---------------------------~~~~~~l~-------~l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~ 199 (269)
T PRK08181 155 -E---------------------------LQLESAIA-------KLDKFDLLILDDLAYVTKDQAETSVLFELISARYER 199 (269)
T ss_pred -C---------------------------CcHHHHHH-------HHhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhC
Confidence 0 01112222 234678899999997543222 23455666554334
Q ss_pred ceEEEEeccCcHH
Q 003910 404 RQTLLFSATMPRK 416 (787)
Q Consensus 404 ~q~ll~SAT~~~~ 416 (787)
..+|+.|-..+..
T Consensus 200 ~s~IiTSN~~~~~ 212 (269)
T PRK08181 200 RSILITANQPFGE 212 (269)
T ss_pred CCEEEEcCCCHHH
Confidence 4555555555544
No 200
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=97.04 E-value=0.0062 Score=67.50 Aligned_cols=74 Identities=18% Similarity=0.208 Sum_probs=46.7
Q ss_pred CCCCcHHHHHHHHHHH----cCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHH
Q 003910 245 YEKPTSIQCQALPIIL----SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKK 320 (787)
Q Consensus 245 ~~~ptp~Q~~ai~~il----~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~ 320 (787)
|...+|-|.+-+-.+. .+-++|+..|+|+|||++.+..++.+.+..|. ...+.+++.-|..-+.....+++.
T Consensus 14 Y~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~----~~~KliYCSRTvpEieK~l~El~~ 89 (755)
T KOG1131|consen 14 YDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPD----EHRKLIYCSRTVPEIEKALEELKR 89 (755)
T ss_pred CcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCc----ccceEEEecCcchHHHHHHHHHHH
Confidence 4556677776665544 44689999999999999866666666655542 223455555555545555555555
Q ss_pred Hh
Q 003910 321 FA 322 (787)
Q Consensus 321 ~~ 322 (787)
+.
T Consensus 90 l~ 91 (755)
T KOG1131|consen 90 LM 91 (755)
T ss_pred HH
Confidence 43
No 201
>PF13245 AAA_19: Part of AAA domain
Probab=97.01 E-value=0.0022 Score=54.12 Aligned_cols=53 Identities=21% Similarity=0.286 Sum_probs=37.0
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHH
Q 003910 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLET 318 (787)
Q Consensus 262 grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~ 318 (787)
..-+++.++.|+|||.+ ++.++.++.... ... +..+||++||+..+.++.+.+
T Consensus 10 ~~~~vv~g~pGtGKT~~-~~~~i~~l~~~~--~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTT-LAARIAELLAAR--ADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHHHHHh--cCC-CCeEEEECCCHHHHHHHHHHH
Confidence 34455699999999976 444455554211 012 567999999999999887777
No 202
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=96.95 E-value=0.0018 Score=78.60 Aligned_cols=155 Identities=17% Similarity=0.127 Sum_probs=92.0
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHHhcCcc----------cccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEE
Q 003910 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPE----------LQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVS 330 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla~llp~l~~l~~~~~----------~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~ 330 (787)
.|++++++..+|+|||..-+.-.+.++-+... .........|||+|. .+..||.+++.+.+... ++|.
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~ 450 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKVL 450 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceEE
Confidence 45678999999999998855544443211100 000113457999998 66679999999998753 6666
Q ss_pred EEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhcc--------------cc----cc--ceeEEEEechhhhhcCCCh
Q 003910 331 AVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKA--------------LT----MS--RVTYLVLDEADRMFDLGFE 390 (787)
Q Consensus 331 ~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~--------------~~----l~--~i~~lViDEah~m~~~~f~ 390 (787)
.+.|-....-........+|||++||..|...+.... .. |- .|=-|+||||+.+-. -.
T Consensus 451 ~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves--ss 528 (1394)
T KOG0298|consen 451 LYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES--SS 528 (1394)
T ss_pred EEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--hH
Confidence 5555221111001112359999999999987664321 11 11 122389999996544 24
Q ss_pred HHHHHHhhhcCCCceEEEEeccCcHHHHHH
Q 003910 391 PQIRSIVGQIRPDRQTLLFSATMPRKVEKL 420 (787)
Q Consensus 391 ~~i~~il~~~~~~~q~ll~SAT~~~~v~~l 420 (787)
....+++..++ ....-.+|.|+-..+..+
T Consensus 529 S~~a~M~~rL~-~in~W~VTGTPiq~Iddl 557 (1394)
T KOG0298|consen 529 SAAAEMVRRLH-AINRWCVTGTPIQKIDDL 557 (1394)
T ss_pred HHHHHHHHHhh-hhceeeecCCchhhhhhh
Confidence 44555555543 334567788864445444
No 203
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.94 E-value=0.063 Score=71.48 Aligned_cols=237 Identities=15% Similarity=0.194 Sum_probs=128.2
Q ss_pred CCcHHHHHHHHHHHcC--CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhh
Q 003910 247 KPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS 324 (787)
Q Consensus 247 ~ptp~Q~~ai~~il~g--rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~ 324 (787)
.+++-|.+++..++.. +-+++.+..|+|||.+ +-. +..++. ..|..+++++||-.-+..+.+.+...+.
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~-l~~~~~------~~G~~V~~lAPTgrAA~~L~e~~g~~A~- 499 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQL-LLHLAS------EQGYEIQIITAGSLSAQELRQKIPRLAS- 499 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHH-HHHHHH------hcCCeEEEEeCCHHHHHHHHHHhcchhh-
Confidence 5889999999999876 5688899999999965 333 333333 2467799999998877666544321110
Q ss_pred cCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHhhhc-CCC
Q 003910 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI-RPD 403 (787)
Q Consensus 325 ~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~-~~~ 403 (787)
. ....+..+.. ..-..|...|+ .....+...++||||||-++- ...+..++... +..
T Consensus 500 ------T------i~~~l~~l~~--~~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~----~~~~~~Ll~~a~~~g 557 (1960)
T TIGR02760 500 ------T------FITWVKNLFN--DDQDHTVQGLL----DKSSPFSNKDIFVVDEANKLS----NNELLKLIDKAEQHN 557 (1960)
T ss_pred ------h------HHHHHHhhcc--cccchhHHHhh----cccCCCCCCCEEEEECCCCCC----HHHHHHHHHHHhhcC
Confidence 0 0111111111 11122333333 223345678899999999654 44667777655 467
Q ss_pred ceEEEEecc--CcH----HHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcchHHHHHHhcCCcC-CCCCEEEE
Q 003910 404 RQTLLFSAT--MPR----KVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVF 476 (787)
Q Consensus 404 ~q~ll~SAT--~~~----~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~-~~~kvLVF 476 (787)
.++||+.=+ +|. .+-.++... ....+...........+ .+ .......+...+.+.+.... ....++|+
T Consensus 558 arvVlvGD~~QL~sV~aG~~f~~L~~~--gv~t~~l~~i~rq~~~v--~i-~~~~~~~r~~~ia~~y~~L~~~r~~tliv 632 (1960)
T TIGR02760 558 SKLILLNDSAQRQGMSAGSAIDLLKEG--GVTTYAWVDTKQQKASV--EI-SEAVDKLRVDYIASAWLDLTPDRQNSQVL 632 (1960)
T ss_pred CEEEEEcChhhcCccccchHHHHHHHC--CCcEEEeecccccCcce--ee-eccCchHHHHHHHHHHHhcccccCceEEE
Confidence 889988776 332 222233321 11111111111111111 11 11222334444554444433 33369999
Q ss_pred ecccccHHHHHHHHHH----cC------Cceeecc-CCCCHHHHHHHHHHhhcCC
Q 003910 477 ASKKTTVDEIESQLAQ----KG------FKAAALH-GDKDQASRMEILQKFKSGV 520 (787)
Q Consensus 477 ~~s~~~a~~l~~~L~~----~g------~~v~~lh-g~~~~~eR~~~l~~F~~G~ 520 (787)
..+..+...|....+. .| +.+..|. -.++..++... ..|+.|.
T Consensus 633 ~~t~~dr~~Ln~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~~-~~Yr~Gd 686 (1960)
T TIGR02760 633 ATTHREQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRNA-AHYKQGM 686 (1960)
T ss_pred cCCcHHHHHHHHHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHhhH-hhcCCCC
Confidence 9998887777666544 22 2233332 35677776643 5665553
No 204
>PRK04296 thymidine kinase; Provisional
Probab=96.89 E-value=0.002 Score=64.69 Aligned_cols=109 Identities=14% Similarity=0.186 Sum_probs=58.9
Q ss_pred CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCc---HHHHHHHHHHHHHHhhhcCceEEEEECCCChH
Q 003910 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPT---RELAHQIYLETKKFAKSHGIRVSAVYGGMSKL 339 (787)
Q Consensus 263 rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~Pt---reLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~ 339 (787)
.=.++.+++|+|||... +-++..+. ..+.+++|+-|. +....+ ++...++.+..
T Consensus 3 ~i~litG~~GsGKTT~~-l~~~~~~~-------~~g~~v~i~k~~~d~~~~~~~-------i~~~lg~~~~~-------- 59 (190)
T PRK04296 3 KLEFIYGAMNSGKSTEL-LQRAYNYE-------ERGMKVLVFKPAIDDRYGEGK-------VVSRIGLSREA-------- 59 (190)
T ss_pred EEEEEECCCCCHHHHHH-HHHHHHHH-------HcCCeEEEEeccccccccCCc-------EecCCCCcccc--------
Confidence 34688999999999763 33343332 235667888663 222111 11111221110
Q ss_pred HHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEecc
Q 003910 340 DQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSAT 412 (787)
Q Consensus 340 ~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT 412 (787)
+.+..+..++..+.. .-..+++|||||||.+- ..++..++..+.+.-..+++++-
T Consensus 60 -----------~~~~~~~~~~~~~~~---~~~~~dvviIDEaq~l~----~~~v~~l~~~l~~~g~~vi~tgl 114 (190)
T PRK04296 60 -----------IPVSSDTDIFELIEE---EGEKIDCVLIDEAQFLD----KEQVVQLAEVLDDLGIPVICYGL 114 (190)
T ss_pred -----------eEeCChHHHHHHHHh---hCCCCCEEEEEccccCC----HHHHHHHHHHHHHcCCeEEEEec
Confidence 123444555555433 23467899999998632 34566677765554455555544
No 205
>PRK14974 cell division protein FtsY; Provisional
Probab=96.82 E-value=0.011 Score=64.62 Aligned_cols=132 Identities=22% Similarity=0.271 Sum_probs=74.6
Q ss_pred CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEc-Cc--HHHHHHHHHHHHHHhhhcCceEEEEECCCChH
Q 003910 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA-PT--RELAHQIYLETKKFAKSHGIRVSAVYGGMSKL 339 (787)
Q Consensus 263 rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~-Pt--reLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~ 339 (787)
.-+++++++|+|||.+. .-+..++ .. .+..++++. .| .....|+ +.++...++.+.....+....
T Consensus 141 ~vi~~~G~~GvGKTTti-akLA~~l-~~------~g~~V~li~~Dt~R~~a~eqL----~~~a~~lgv~v~~~~~g~dp~ 208 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTI-AKLAYYL-KK------NGFSVVIAAGDTFRAGAIEQL----EEHAERLGVKVIKHKYGADPA 208 (336)
T ss_pred eEEEEEcCCCCCHHHHH-HHHHHHH-HH------cCCeEEEecCCcCcHHHHHHH----HHHHHHcCCceecccCCCCHH
Confidence 45788999999999762 2222333 21 233454444 32 2333444 444444466543322221111
Q ss_pred HHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhh-cCCChHHHHHHhhhcCCCceEEEEeccCcHHHH
Q 003910 340 DQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF-DLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVE 418 (787)
Q Consensus 340 ~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~-~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~ 418 (787)
.. +.+.+... ....+++||||.+.++. +......+..+...+.++..+++++||...+..
T Consensus 209 ~v-----------------~~~ai~~~--~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~ 269 (336)
T PRK14974 209 AV-----------------AYDAIEHA--KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAV 269 (336)
T ss_pred HH-----------------HHHHHHHH--HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHH
Confidence 10 11222211 12356799999999875 333456677777777888889999999877766
Q ss_pred HHHHHHh
Q 003910 419 KLAREIL 425 (787)
Q Consensus 419 ~l~~~~l 425 (787)
..++.|.
T Consensus 270 ~~a~~f~ 276 (336)
T PRK14974 270 EQAREFN 276 (336)
T ss_pred HHHHHHH
Confidence 6666664
No 206
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=96.78 E-value=0.0074 Score=57.50 Aligned_cols=67 Identities=16% Similarity=0.283 Sum_probs=47.3
Q ss_pred HHHHHHHHHHcCC------ceeeccCCCCHHHHHHHHHHhhcCC-ccEEEEehhhhccCCCCC--ccEEEEecCCC
Q 003910 483 VDEIESQLAQKGF------KAAALHGDKDQASRMEILQKFKSGV-YHVLIATDVAARGLDIKS--IKSVVNFDIAR 549 (787)
Q Consensus 483 a~~l~~~L~~~g~------~v~~lhg~~~~~eR~~~l~~F~~G~-~~VLVaT~v~~rGlDip~--v~~VI~~d~p~ 549 (787)
.+.+...+...+. ...++....+..+...+++.|+... ..||++|.-+.+|+|+++ ++.||+..+|.
T Consensus 4 m~~v~~~~~~~~~~~~l~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 4 MESFVQYWKENGILENINKNLLLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred HHHHHHHHHHcCchhhHhcCCeEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCC
Confidence 4455555555443 2334444566667788999998754 379999988999999998 67899888764
No 207
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.74 E-value=0.021 Score=70.98 Aligned_cols=137 Identities=18% Similarity=0.110 Sum_probs=83.5
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHHc-CCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHH
Q 003910 232 FSTQLMHAISKQGYEKPTSIQCQALPIILS-GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTREL 310 (787)
Q Consensus 232 l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~-grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreL 310 (787)
+++..+...... -..+++-|.+++..+.. .+-+++.+..|+|||.+ +-++...+ . ..+..++.++||---
T Consensus 367 v~~~~l~a~~~~-~~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~-l~~~~~~~-e------~~G~~V~g~ApTgkA 437 (1102)
T PRK13826 367 VREAVLAATFAR-HARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM-MKAAREAW-E------AAGYRVVGGALAGKA 437 (1102)
T ss_pred CCHHHHHHHHhc-CCCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH-HHHHHHHH-H------HcCCeEEEEcCcHHH
Confidence 344444433322 24699999999998865 45688899999999975 33433333 2 236778999999766
Q ss_pred HHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCCh
Q 003910 311 AHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFE 390 (787)
Q Consensus 311 a~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~ 390 (787)
|..+.+ . .++... |-.+|+.........+..-++||||||-++. .
T Consensus 438 A~~L~e----~---~Gi~a~------------------------TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~----~ 482 (1102)
T PRK13826 438 AEGLEK----E---AGIQSR------------------------TLSSWELRWNQGRDQLDNKTVFVLDEAGMVA----S 482 (1102)
T ss_pred HHHHHH----h---hCCCee------------------------eHHHHHhhhccCccCCCCCcEEEEECcccCC----H
Confidence 654422 1 233322 1122211111122346667899999999643 3
Q ss_pred HHHHHHhhhcC-CCceEEEEecc
Q 003910 391 PQIRSIVGQIR-PDRQTLLFSAT 412 (787)
Q Consensus 391 ~~i~~il~~~~-~~~q~ll~SAT 412 (787)
.++..++..+. ...++|++.=+
T Consensus 483 ~~m~~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 483 RQMALFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred HHHHHHHHHHHhcCCEEEEECCH
Confidence 45666666664 56788887766
No 208
>PRK06526 transposase; Provisional
Probab=96.71 E-value=0.012 Score=61.97 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=20.6
Q ss_pred HHHHHHcCCCEEEEccCCCchhHHH
Q 003910 255 ALPIILSGRDIIGIAKTGSGKTAAF 279 (787)
Q Consensus 255 ai~~il~grdvii~a~TGsGKTla~ 279 (787)
+..++..++++++++|+|+|||...
T Consensus 91 ~~~fi~~~~nlll~Gp~GtGKThLa 115 (254)
T PRK06526 91 TLDFVTGKENVVFLGPPGTGKTHLA 115 (254)
T ss_pred cCchhhcCceEEEEeCCCCchHHHH
Confidence 3456777899999999999999753
No 209
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.69 E-value=0.02 Score=63.79 Aligned_cols=132 Identities=17% Similarity=0.172 Sum_probs=73.1
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCc-HHHHHHHHHHHHHHhhhcCceEEEEECCCChHH
Q 003910 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPT-RELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (787)
Q Consensus 262 grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~Pt-reLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~ 340 (787)
.+.++++++||+|||.+..-.+ .++.... .......+||-+-| |.-+.. +++.++...++.+.+
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA-~~~~~~~--~~~g~~V~lit~Dt~R~aa~e---QL~~~a~~lgvpv~~--------- 238 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLA-AIYGINS--DDKSLNIKIITIDNYRIGAKK---QIQTYGDIMGIPVKA--------- 238 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHH-HHHHhhh--ccCCCeEEEEeccCccHHHHH---HHHHHhhcCCcceEe---------
Confidence 3578899999999998743222 2221110 01123344555554 333322 266666655654422
Q ss_pred HHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCC-ChHHHHHHhhhcCCC-ceEEEEeccCc-HHH
Q 003910 341 QFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG-FEPQIRSIVGQIRPD-RQTLLFSATMP-RKV 417 (787)
Q Consensus 341 ~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~-f~~~i~~il~~~~~~-~q~ll~SAT~~-~~v 417 (787)
+-++..+...+. .+..+++||||++.++.... ....+..++..+.++ ..+|.+|||.. ..+
T Consensus 239 ------------~~~~~~l~~~L~----~~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~ 302 (388)
T PRK12723 239 ------------IESFKDLKEEIT----QSKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDV 302 (388)
T ss_pred ------------eCcHHHHHHHHH----HhCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHH
Confidence 223444444443 24578999999999865211 123455555555443 46788999974 455
Q ss_pred HHHHHHH
Q 003910 418 EKLAREI 424 (787)
Q Consensus 418 ~~l~~~~ 424 (787)
.+.+..|
T Consensus 303 ~~~~~~~ 309 (388)
T PRK12723 303 KEIFHQF 309 (388)
T ss_pred HHHHHHh
Confidence 5566665
No 210
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.69 E-value=0.0045 Score=66.79 Aligned_cols=123 Identities=15% Similarity=0.070 Sum_probs=75.8
Q ss_pred CcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCc
Q 003910 248 PTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGI 327 (787)
Q Consensus 248 ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i 327 (787)
+|+-|.++|.+ ...+++|.|..|||||.+.+.- +.+++.... .....+|+|++|+..|..+.+.+...+.....
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~r-i~~ll~~~~---~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~ 74 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLER-IAYLLYEGG---VPPERILVLTFTNAAAQEMRERIRELLEEEQQ 74 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHH-HHHHHHTSS---STGGGEEEEESSHHHHHHHHHHHHHHHHHCCH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHH-HHHhhcccc---CChHHheecccCHHHHHHHHHHHHHhcCcccc
Confidence 57889999988 6679999999999999974443 444444322 22345999999999999999999987654321
Q ss_pred eEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhcccccc--ceeEEEEechh
Q 003910 328 RVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMS--RVTYLVLDEAD 382 (787)
Q Consensus 328 ~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~--~i~~lViDEah 382 (787)
.. ............-..+.|+|...+...+-+...... .-.+-|+|+..
T Consensus 75 ~~------~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 75 ES------SDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp CC------TT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred cc------cccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 10 000011112223467889998888665443222211 23456777777
No 211
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.66 E-value=0.0032 Score=69.94 Aligned_cols=60 Identities=22% Similarity=0.320 Sum_probs=44.9
Q ss_pred CCcHHHHHHHHHH------HcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHH
Q 003910 247 KPTSIQCQALPII------LSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQI 314 (787)
Q Consensus 247 ~ptp~Q~~ai~~i------l~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi 314 (787)
+|++-|+.++..+ ..+..+++.++-|+|||. ++-.+.+.+.. .+..+++++||-..|..+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~--l~~~i~~~~~~------~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSF--LIKAIIDYLRS------RGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhH--HHHHHHHHhcc------ccceEEEecchHHHHHhc
Confidence 3677899998888 577899999999999995 44444444332 356799999997776554
No 212
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.64 E-value=0.0097 Score=65.70 Aligned_cols=134 Identities=19% Similarity=0.186 Sum_probs=68.4
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHH
Q 003910 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~ 340 (787)
.+..+++++|||+|||......+...+... +....++|.+-+ .-.--.+.++.|+...++.+..+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~-----G~~~V~lit~D~--~R~ga~EqL~~~a~~~gv~~~~~-------- 200 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRF-----GASKVALLTTDS--YRIGGHEQLRIFGKILGVPVHAV-------- 200 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhc-----CCCeEEEEeccc--ccccHHHHHHHHHHHcCCceEec--------
Confidence 567899999999999986433332222221 111223333333 21112345666666556544332
Q ss_pred HHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcC-CChHHHHHHhhhcCCCceEEEEeccCcH-HHH
Q 003910 341 QFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL-GFEPQIRSIVGQIRPDRQTLLFSATMPR-KVE 418 (787)
Q Consensus 341 ~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~-~f~~~i~~il~~~~~~~q~ll~SAT~~~-~v~ 418 (787)
-++..+...+. .+.+.++|+||.+-+.... ....++..+.....+...+|+++||... .+.
T Consensus 201 -------------~~~~~l~~~l~----~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~ 263 (374)
T PRK14722 201 -------------KDGGDLQLALA----ELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLN 263 (374)
T ss_pred -------------CCcccHHHHHH----HhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHH
Confidence 23333333222 2456688999999753211 1122233332222344568889999754 445
Q ss_pred HHHHHHhC
Q 003910 419 KLAREILS 426 (787)
Q Consensus 419 ~l~~~~l~ 426 (787)
+.+..|..
T Consensus 264 evi~~f~~ 271 (374)
T PRK14722 264 EVVQAYRS 271 (374)
T ss_pred HHHHHHHH
Confidence 56666643
No 213
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.61 E-value=0.016 Score=62.24 Aligned_cols=143 Identities=15% Similarity=0.228 Sum_probs=85.7
Q ss_pred CCCCCcHHHHHHHHHHHcCC--CEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHH-------
Q 003910 244 GYEKPTSIQCQALPIILSGR--DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQI------- 314 (787)
Q Consensus 244 g~~~ptp~Q~~ai~~il~gr--dvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi------- 314 (787)
|+......|.-|+..++.-. =|.+.++.|+|||+.++.+.|...+..+.. .++||.=|+..+-..|
T Consensus 225 Gi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y-----~KiiVtRp~vpvG~dIGfLPG~e 299 (436)
T COG1875 225 GIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRY-----RKIIVTRPTVPVGEDIGFLPGTE 299 (436)
T ss_pred ccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhh-----ceEEEecCCcCcccccCcCCCch
Confidence 55666678888888888653 477889999999999999999988876433 3467766765544222
Q ss_pred HHHHHHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccc----------eeEEEEechhhh
Q 003910 315 YLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSR----------VTYLVLDEADRM 384 (787)
Q Consensus 315 ~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~----------i~~lViDEah~m 384 (787)
.+.+.-|+.. .......+.. .-=|+.+.|..++.+..+.+.. -.+||||||+.+
T Consensus 300 EeKm~PWmq~-------------i~DnLE~L~~---~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNL 363 (436)
T COG1875 300 EEKMGPWMQA-------------IFDNLEVLFS---PNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNL 363 (436)
T ss_pred hhhccchHHH-------------HHhHHHHHhc---ccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhcc
Confidence 1111111110 0011111111 1112234444444443322211 257999999985
Q ss_pred hcCCChHHHHHHhhhcCCCceEEEEec
Q 003910 385 FDLGFEPQIRSIVGQIRPDRQTLLFSA 411 (787)
Q Consensus 385 ~~~~f~~~i~~il~~~~~~~q~ll~SA 411 (787)
- ..++..|+.++.+..+++++.-
T Consensus 364 T----pheikTiltR~G~GsKIVl~gd 386 (436)
T COG1875 364 T----PHELKTILTRAGEGSKIVLTGD 386 (436)
T ss_pred C----HHHHHHHHHhccCCCEEEEcCC
Confidence 4 5688999999988888887654
No 214
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=96.56 E-value=0.0092 Score=56.91 Aligned_cols=68 Identities=18% Similarity=0.333 Sum_probs=45.4
Q ss_pred cHHHHHHHHHHcCC---ceeeccCCCCHHHHHHHHHHhhcCCc---cEEEEehh--hhccCCCCC--ccEEEEecCCC
Q 003910 482 TVDEIESQLAQKGF---KAAALHGDKDQASRMEILQKFKSGVY---HVLIATDV--AARGLDIKS--IKSVVNFDIAR 549 (787)
Q Consensus 482 ~a~~l~~~L~~~g~---~v~~lhg~~~~~eR~~~l~~F~~G~~---~VLVaT~v--~~rGlDip~--v~~VI~~d~p~ 549 (787)
..+.+.+.+...+. ...++.......+...+++.|++... .||+++.- +.+|||+++ ++.||+..+|.
T Consensus 3 ~m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 3 YLEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred HHHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 34556666665443 12233333334455788899987543 68988876 899999998 78899988774
No 215
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.51 E-value=0.03 Score=52.31 Aligned_cols=25 Identities=16% Similarity=0.328 Sum_probs=18.2
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHH
Q 003910 262 GRDIIGIAKTGSGKTAAFVLPMIVHI 287 (787)
Q Consensus 262 grdvii~a~TGsGKTla~llp~l~~l 287 (787)
++.+++.+++|+|||.. +..++..+
T Consensus 19 ~~~v~i~G~~G~GKT~l-~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL-ARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHh
Confidence 67899999999999964 33333333
No 216
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.42 E-value=0.0066 Score=63.17 Aligned_cols=87 Identities=24% Similarity=0.360 Sum_probs=65.8
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECC-CChHHHHHHHhc-CCcEEEeCHHHHHHHHHhccccccce
Q 003910 296 EEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGG-MSKLDQFKELKA-GCEIVIATPGRLIDMLKMKALTMSRV 373 (787)
Q Consensus 296 ~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg-~~~~~~~~~l~~-~~dIIV~Tp~~L~~~l~~~~~~l~~i 373 (787)
...|.+|||+..-.-|..+.+.++.|.. .+..|+-++.- ....+++.-|.. .++|.||||+||..+++...+.++.+
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~-k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l 202 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKG-KDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNL 202 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhcc-CCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccC
Confidence 4578999999988888888888887731 12333333332 245566666664 58999999999999999999999999
Q ss_pred eEEEEechhh
Q 003910 374 TYLVLDEADR 383 (787)
Q Consensus 374 ~~lViDEah~ 383 (787)
.+||||--|.
T Consensus 203 ~~ivlD~s~~ 212 (252)
T PF14617_consen 203 KRIVLDWSYL 212 (252)
T ss_pred eEEEEcCCcc
Confidence 9999998763
No 217
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.30 E-value=0.087 Score=59.65 Aligned_cols=130 Identities=22% Similarity=0.284 Sum_probs=69.2
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHh-cCcccccCCCCEEEEEcCc-HHHHHHHHHHHHHHhhhcCceEEEEECCCChH
Q 003910 262 GRDIIGIAKTGSGKTAAFVLPMIVHIM-DQPELQKEEGPIGVICAPT-RELAHQIYLETKKFAKSHGIRVSAVYGGMSKL 339 (787)
Q Consensus 262 grdvii~a~TGsGKTla~llp~l~~l~-~~~~~~~~~~p~vLIl~Pt-reLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~ 339 (787)
++.+++++|||+|||.+... +..++. .. .....+||-+-+ |.-+ .+.++.|+...++.+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~k-LA~~~~~~~-----~g~~V~li~~D~~r~~a---~eqL~~~a~~~~vp~~--------- 282 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAK-LAARYALLY-----GKKKVALITLDTYRIGA---VEQLKTYAKIMGIPVE--------- 282 (424)
T ss_pred CcEEEEECCCCCCHHHHHHH-HHHHHHHhc-----CCCeEEEEECCccHHHH---HHHHHHHHHHhCCceE---------
Confidence 56789999999999976332 222221 11 112334444433 3222 2445555544454332
Q ss_pred HHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhc-CCChHHHHHHhh-hcCCCceEEEEeccCc-HH
Q 003910 340 DQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFD-LGFEPQIRSIVG-QIRPDRQTLLFSATMP-RK 416 (787)
Q Consensus 340 ~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~-~~f~~~i~~il~-~~~~~~q~ll~SAT~~-~~ 416 (787)
++.++..|...+.. +..+++||||-+-+... ......+..++. ...+....++++||.. ..
T Consensus 283 ------------~~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~ 346 (424)
T PRK05703 283 ------------VVYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYED 346 (424)
T ss_pred ------------ccCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHH
Confidence 22344445454432 34679999999865321 112234555555 2234456788999875 45
Q ss_pred HHHHHHHHh
Q 003910 417 VEKLAREIL 425 (787)
Q Consensus 417 v~~l~~~~l 425 (787)
+..++..|-
T Consensus 347 l~~~~~~f~ 355 (424)
T PRK05703 347 LKDIYKHFS 355 (424)
T ss_pred HHHHHHHhC
Confidence 566666653
No 218
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.22 E-value=0.034 Score=56.11 Aligned_cols=131 Identities=19% Similarity=0.276 Sum_probs=72.0
Q ss_pred EEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHH
Q 003910 265 IIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE 344 (787)
Q Consensus 265 vii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~ 344 (787)
+++++|||+|||.+.. -+..++... ....+||.+-|--.+ -.++++.++...++.+....-...
T Consensus 4 i~lvGptGvGKTTt~a-KLAa~~~~~------~~~v~lis~D~~R~g--a~eQL~~~a~~l~vp~~~~~~~~~------- 67 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIA-KLAARLKLK------GKKVALISADTYRIG--AVEQLKTYAEILGVPFYVARTESD------- 67 (196)
T ss_dssp EEEEESTTSSHHHHHH-HHHHHHHHT------T--EEEEEESTSSTH--HHHHHHHHHHHHTEEEEESSTTSC-------
T ss_pred EEEECCCCCchHhHHH-HHHHHHhhc------cccceeecCCCCCcc--HHHHHHHHHHHhccccchhhcchh-------
Confidence 6789999999998733 333333221 233455555433222 244577777766776544322211
Q ss_pred HhcCCcEEEeCHHHHH-HHHHhccccccceeEEEEechhhhhc-CCChHHHHHHhhhcCCCceEEEEeccCcHHHHHHHH
Q 003910 345 LKAGCEIVIATPGRLI-DMLKMKALTMSRVTYLVLDEADRMFD-LGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAR 422 (787)
Q Consensus 345 l~~~~dIIV~Tp~~L~-~~l~~~~~~l~~i~~lViDEah~m~~-~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~ 422 (787)
|..+. +.++. ....++++|+||=+-+... ......+..++..+.+..-++.++||........+.
T Consensus 68 -----------~~~~~~~~l~~--~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~ 134 (196)
T PF00448_consen 68 -----------PAEIAREALEK--FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQAL 134 (196)
T ss_dssp -----------HHHHHHHHHHH--HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHH
T ss_pred -----------hHHHHHHHHHH--HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHH
Confidence 11111 22221 1234578899999876432 223456667777777788889999998665444444
Q ss_pred HH
Q 003910 423 EI 424 (787)
Q Consensus 423 ~~ 424 (787)
.+
T Consensus 135 ~~ 136 (196)
T PF00448_consen 135 AF 136 (196)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 219
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.11 E-value=0.089 Score=57.98 Aligned_cols=136 Identities=18% Similarity=0.251 Sum_probs=80.3
Q ss_pred HcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChH
Q 003910 260 LSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKL 339 (787)
Q Consensus 260 l~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~ 339 (787)
.+++-+++.+|||.|||.+..-.+..+.+. ......+||.+-|--... +++++.++..+++.+.+
T Consensus 201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~~-----~~~~kVaiITtDtYRIGA--~EQLk~Ya~im~vp~~v-------- 265 (407)
T COG1419 201 EQKRVIALVGPTGVGKTTTLAKLAARYVML-----KKKKKVAIITTDTYRIGA--VEQLKTYADIMGVPLEV-------- 265 (407)
T ss_pred ccCcEEEEECCCCCcHHHHHHHHHHHHHhh-----ccCcceEEEEeccchhhH--HHHHHHHHHHhCCceEE--------
Confidence 347889999999999998733222222211 233455677666644432 45677777766776644
Q ss_pred HHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhh-cCCChHHHHHHhhhcCCCceEEEEeccCc-HHH
Q 003910 340 DQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF-DLGFEPQIRSIVGQIRPDRQTLLFSATMP-RKV 417 (787)
Q Consensus 340 ~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~-~~~f~~~i~~il~~~~~~~q~ll~SAT~~-~~v 417 (787)
+-+|.-|...+. .+.++++|.||=+-+-. |.-...++..++....+.--.|.+|||.. ..+
T Consensus 266 -------------v~~~~el~~ai~----~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dl 328 (407)
T COG1419 266 -------------VYSPKELAEAIE----ALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDL 328 (407)
T ss_pred -------------ecCHHHHHHHHH----HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHH
Confidence 445555555443 35566778888776421 21123455555555545556788999964 455
Q ss_pred HHHHHHHhCC
Q 003910 418 EKLAREILSD 427 (787)
Q Consensus 418 ~~l~~~~l~~ 427 (787)
.+.+..|-.-
T Consensus 329 kei~~~f~~~ 338 (407)
T COG1419 329 KEIIKQFSLF 338 (407)
T ss_pred HHHHHHhccC
Confidence 6666666443
No 220
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.06 E-value=0.076 Score=58.67 Aligned_cols=129 Identities=22% Similarity=0.329 Sum_probs=70.5
Q ss_pred CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEE-EEEcCc-H-HHHHHHHHHHHHHhhhcCceEEEEECCCChH
Q 003910 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIG-VICAPT-R-ELAHQIYLETKKFAKSHGIRVSAVYGGMSKL 339 (787)
Q Consensus 263 rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~v-LIl~Pt-r-eLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~ 339 (787)
+.++++++||+|||..... +...+.. .+.++ +|-+-+ | ..+.| ++.++...++.+.
T Consensus 242 ~vI~LVGptGvGKTTTiaK-LA~~L~~-------~GkkVglI~aDt~RiaAvEQ----Lk~yae~lgipv~--------- 300 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAK-MAWQFHG-------KKKTVGFITTDHSRIGTVQQ----LQDYVKTIGFEVI--------- 300 (436)
T ss_pred cEEEEECCCCCcHHHHHHH-HHHHHHH-------cCCcEEEEecCCcchHHHHH----HHHHhhhcCCcEE---------
Confidence 5688999999999986333 2233322 23334 444433 3 23333 3444433333322
Q ss_pred HHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcC-CChHHHHHHhhhcCCCceEEEEeccC-cHHH
Q 003910 340 DQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL-GFEPQIRSIVGQIRPDRQTLLFSATM-PRKV 417 (787)
Q Consensus 340 ~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~-~f~~~i~~il~~~~~~~q~ll~SAT~-~~~v 417 (787)
++.+|..|.+.+..-. ....+++|+||-+=+.... .....+..++....+..-+|.+|||. .+.+
T Consensus 301 ------------v~~d~~~L~~aL~~lk-~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~ 367 (436)
T PRK11889 301 ------------AVRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDM 367 (436)
T ss_pred ------------ecCCHHHHHHHHHHHH-hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHH
Confidence 2346666666554211 1125789999998764422 12334455555555666677799875 4566
Q ss_pred HHHHHHHh
Q 003910 418 EKLAREIL 425 (787)
Q Consensus 418 ~~l~~~~l 425 (787)
...++.|-
T Consensus 368 ~~i~~~F~ 375 (436)
T PRK11889 368 IEIITNFK 375 (436)
T ss_pred HHHHHHhc
Confidence 77777664
No 221
>PHA02533 17 large terminase protein; Provisional
Probab=96.05 E-value=0.03 Score=65.05 Aligned_cols=148 Identities=16% Similarity=0.070 Sum_probs=86.2
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcC
Q 003910 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (787)
Q Consensus 247 ~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~ 326 (787)
.|.|+|...+..+..++-.++..+=..|||.+..+.++..++.. .+..+++++|++.-|..+.+.++.......
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~------~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P 132 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN------KDKNVGILAHKASMAAEVLDRTKQAIELLP 132 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC------CCCEEEEEeCCHHHHHHHHHHHHHHHHhCH
Confidence 58899999998876666667777778899987665555444432 255899999999999999888887654321
Q ss_pred --ceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHhhhcCC--
Q 003910 327 --IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRP-- 402 (787)
Q Consensus 327 --i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~-- 402 (787)
++...... ......+.+|+.|.+.|-. .....-..+.++||||+|.+.+ +...+..+...+..
T Consensus 133 ~l~~~~i~~~----~~~~I~l~NGS~I~~lss~-------~~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~lasg~ 199 (534)
T PHA02533 133 DFLQPGIVEW----NKGSIELENGSKIGAYASS-------PDAVRGNSFAMIYIDECAFIPN--FIDFWLAIQPVISSGR 199 (534)
T ss_pred HHhhcceeec----CccEEEeCCCCEEEEEeCC-------CCccCCCCCceEEEeccccCCC--HHHHHHHHHHHHHcCC
Confidence 11100000 0011122456666555421 1111223567899999997654 22333333333322
Q ss_pred CceEEEEeccC
Q 003910 403 DRQTLLFSATM 413 (787)
Q Consensus 403 ~~q~ll~SAT~ 413 (787)
..+++++|++.
T Consensus 200 ~~r~iiiSTp~ 210 (534)
T PHA02533 200 SSKIIITSTPN 210 (534)
T ss_pred CceEEEEECCC
Confidence 23466666653
No 222
>PRK06921 hypothetical protein; Provisional
Probab=96.03 E-value=0.075 Score=56.33 Aligned_cols=46 Identities=22% Similarity=0.227 Sum_probs=27.7
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHH
Q 003910 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQI 314 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi 314 (787)
.+..+++.+++|+|||.. +.++...+... .+..++++ +..+|..++
T Consensus 116 ~~~~l~l~G~~G~GKThL-a~aia~~l~~~------~g~~v~y~-~~~~l~~~l 161 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHL-LTAAANELMRK------KGVPVLYF-PFVEGFGDL 161 (266)
T ss_pred CCCeEEEECCCCCcHHHH-HHHHHHHHhhh------cCceEEEE-EHHHHHHHH
Confidence 357899999999999964 34444444331 13445554 444555443
No 223
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.99 E-value=0.023 Score=52.54 Aligned_cols=17 Identities=41% Similarity=0.589 Sum_probs=14.9
Q ss_pred CCCEEEEccCCCchhHH
Q 003910 262 GRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 262 grdvii~a~TGsGKTla 278 (787)
+..+++++++|+|||..
T Consensus 2 ~~~~~l~G~~G~GKTtl 18 (148)
T smart00382 2 GEVILIVGPPGSGKTTL 18 (148)
T ss_pred CCEEEEECCCCCcHHHH
Confidence 46789999999999975
No 224
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.94 E-value=0.092 Score=54.82 Aligned_cols=109 Identities=18% Similarity=0.241 Sum_probs=58.7
Q ss_pred CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHH
Q 003910 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF 342 (787)
Q Consensus 263 rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~ 342 (787)
..+++++++|+|||.. +..+..++... +..++++ +..+|...+...+. .
T Consensus 100 ~~~~l~G~~GtGKThL-a~aia~~l~~~-------g~~v~~i-t~~~l~~~l~~~~~----~------------------ 148 (244)
T PRK07952 100 ASFIFSGKPGTGKNHL-AAAICNELLLR-------GKSVLII-TVADIMSAMKDTFS----N------------------ 148 (244)
T ss_pred ceEEEECCCCCCHHHH-HHHHHHHHHhc-------CCeEEEE-EHHHHHHHHHHHHh----h------------------
Confidence 4789999999999975 44455555432 3445554 44444433322110 0
Q ss_pred HHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChH-HHHHHhhh-cCCCceEEEEeccCcHHHH
Q 003910 343 KELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEP-QIRSIVGQ-IRPDRQTLLFSATMPRKVE 418 (787)
Q Consensus 343 ~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~-~i~~il~~-~~~~~q~ll~SAT~~~~v~ 418 (787)
. -.+...++.. +..+++|||||++......|.. .+..|+.. ......+++.|---+..+.
T Consensus 149 ------~---~~~~~~~l~~-------l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~ 210 (244)
T PRK07952 149 ------S---ETSEEQLLND-------LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMT 210 (244)
T ss_pred ------c---cccHHHHHHH-------hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHH
Confidence 0 0122223322 4578899999999766444444 33445543 2234556666655544443
No 225
>PRK08116 hypothetical protein; Validated
Probab=95.83 E-value=0.17 Score=53.71 Aligned_cols=109 Identities=15% Similarity=0.199 Sum_probs=58.1
Q ss_pred CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHH
Q 003910 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF 342 (787)
Q Consensus 263 rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~ 342 (787)
..+++.+++|+|||.. +.++.++++.. +..++ +++..+|..++...+... ..
T Consensus 115 ~gl~l~G~~GtGKThL-a~aia~~l~~~-------~~~v~-~~~~~~ll~~i~~~~~~~---------------~~---- 166 (268)
T PRK08116 115 VGLLLWGSVGTGKTYL-AACIANELIEK-------GVPVI-FVNFPQLLNRIKSTYKSS---------------GK---- 166 (268)
T ss_pred ceEEEECCCCCCHHHH-HHHHHHHHHHc-------CCeEE-EEEHHHHHHHHHHHHhcc---------------cc----
Confidence 3499999999999975 44555665442 23344 445556655443322110 00
Q ss_pred HHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhh--hhcCCChHHHHHHhhhc-CCCceEEEEeccCcHHHH
Q 003910 343 KELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR--MFDLGFEPQIRSIVGQI-RPDRQTLLFSATMPRKVE 418 (787)
Q Consensus 343 ~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~--m~~~~f~~~i~~il~~~-~~~~q~ll~SAT~~~~v~ 418 (787)
.+...++. .+..+++||||+++. ..++ ....+..|+... .....+|+.|-..|..+.
T Consensus 167 -----------~~~~~~~~-------~l~~~dlLviDDlg~e~~t~~-~~~~l~~iin~r~~~~~~~IiTsN~~~~eL~ 226 (268)
T PRK08116 167 -----------EDENEIIR-------SLVNADLLILDDLGAERDTEW-AREKVYNIIDSRYRKGLPTIVTTNLSLEELK 226 (268)
T ss_pred -----------ccHHHHHH-------HhcCCCEEEEecccCCCCCHH-HHHHHHHHHHHHHHCCCCEEEECCCCHHHHH
Confidence 01111222 234667899999964 2222 233455555543 344567766666665544
No 226
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=95.81 E-value=0.04 Score=67.00 Aligned_cols=109 Identities=17% Similarity=0.153 Sum_probs=73.1
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhc
Q 003910 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (787)
Q Consensus 246 ~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~ 325 (787)
..|+|-|.+++.. ....++|.|..|||||.+ ++.-+.+++..... ....+|+|+.|+..|..+.+.+.++....
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~-L~~Ria~Li~~~~v---~p~~IL~lTFTnkAA~em~~Rl~~~~~~~ 76 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRV-LTHRIAWLLSVENA---SPHSIMAVTFTNKAAAEMRHRIGALLGTS 76 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHH-HHHHHHHHHHcCCC---CHHHeEeeeccHHHHHHHHHHHHHHhccc
Confidence 4689999999864 346899999999999987 55556666653211 23458999999999999998888875310
Q ss_pred CceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhcc---ccccceeEEEEechhh
Q 003910 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKA---LTMSRVTYLVLDEADR 383 (787)
Q Consensus 326 ~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~---~~l~~i~~lViDEah~ 383 (787)
...+.|+|...|...+.+.. ..+. -.+-|+|+.+.
T Consensus 77 ----------------------~~~~~i~TfHs~~~~iLr~~~~~~g~~-~~f~i~d~~d~ 114 (715)
T TIGR01075 77 ----------------------ARGMWIGTFHGLAHRLLRAHHLDAGLP-QDFQILDSDDQ 114 (715)
T ss_pred ----------------------ccCcEEEcHHHHHHHHHHHHHHHhCCC-CCCeecCHHHH
Confidence 02467788877754333221 1111 13457787764
No 227
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.78 E-value=0.1 Score=50.05 Aligned_cols=44 Identities=18% Similarity=0.336 Sum_probs=25.0
Q ss_pred ccceeEEEEechhhhhcCCC----------hHHHHHHhhhcCCCceEEEEeccC
Q 003910 370 MSRVTYLVLDEADRMFDLGF----------EPQIRSIVGQIRPDRQTLLFSATM 413 (787)
Q Consensus 370 l~~i~~lViDEah~m~~~~f----------~~~i~~il~~~~~~~q~ll~SAT~ 413 (787)
...+.+|||||++.+..... ...+..++..++....+++++...
T Consensus 83 ~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~ 136 (165)
T cd01120 83 RGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQV 136 (165)
T ss_pred CCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEec
Confidence 35678999999998754321 234444444444334444444443
No 228
>PRK05642 DNA replication initiation factor; Validated
Probab=95.77 E-value=0.032 Score=57.98 Aligned_cols=44 Identities=18% Similarity=0.348 Sum_probs=28.8
Q ss_pred cceeEEEEechhhhhcC-CChHHHHHHhhhcCCCceEEEEeccCc
Q 003910 371 SRVTYLVLDEADRMFDL-GFEPQIRSIVGQIRPDRQTLLFSATMP 414 (787)
Q Consensus 371 ~~i~~lViDEah~m~~~-~f~~~i~~il~~~~~~~q~ll~SAT~~ 414 (787)
..+++||||++|.+... .+...+..+++.+......++++++.+
T Consensus 96 ~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~ 140 (234)
T PRK05642 96 EQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKS 140 (234)
T ss_pred hhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCC
Confidence 35678999999977532 345567788877665444456666643
No 229
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=95.74 E-value=0.022 Score=65.75 Aligned_cols=150 Identities=19% Similarity=0.183 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHc-----C----CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHH
Q 003910 250 SIQCQALPIILS-----G----RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKK 320 (787)
Q Consensus 250 p~Q~~ai~~il~-----g----rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~ 320 (787)
|+|+-.+-.++- + +.+++.-+=+-|||......++.+++-. ...++.+++++++++-|..+++.+.+
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~----g~~~~~i~~~A~~~~QA~~~f~~~~~ 76 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD----GEPGAEIYCAANTRDQAKIVFDEAKK 76 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC----CccCceEEEEeCCHHHHHHHHHHHHH
Confidence 678888777772 2 3578888999999976555445555432 24467899999999999999999999
Q ss_pred HhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHh--ccccccceeEEEEechhhhhcCCChHHHHHHhh
Q 003910 321 FAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM--KALTMSRVTYLVLDEADRMFDLGFEPQIRSIVG 398 (787)
Q Consensus 321 ~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~--~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~ 398 (787)
+........... . ...... ....|..-..+.++..+.. ....-.+.+++|+||+|.+.+......+..-..
T Consensus 77 ~i~~~~~l~~~~-~-----~~~~~~-~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l~~g~~ 149 (477)
T PF03354_consen 77 MIEASPELRKRK-K-----PKIIKS-NKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDALESGMG 149 (477)
T ss_pred HHHhChhhccch-h-----hhhhhh-hceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHHHhhhc
Confidence 876422111000 0 000000 0112222221222222211 122223678999999998766433333333333
Q ss_pred hcCCCceEEEEec
Q 003910 399 QIRPDRQTLLFSA 411 (787)
Q Consensus 399 ~~~~~~q~ll~SA 411 (787)
. +++.+++++|.
T Consensus 150 ~-r~~pl~~~IST 161 (477)
T PF03354_consen 150 A-RPNPLIIIIST 161 (477)
T ss_pred c-CCCceEEEEeC
Confidence 3 45666666544
No 230
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=95.71 E-value=0.045 Score=66.51 Aligned_cols=109 Identities=17% Similarity=0.156 Sum_probs=72.4
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhc
Q 003910 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (787)
Q Consensus 246 ~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~ 325 (787)
..|+|-|.+++... ...++|.|..|||||.+ ++.-+.+++..... ....+|+|+-|+..|..+.+.+.++....
T Consensus 8 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~v-l~~Ria~Li~~~~v---~p~~IL~lTFT~kAA~Em~~Rl~~~~~~~ 81 (721)
T PRK11773 8 DSLNDKQREAVAAP--LGNMLVLAGAGSGKTRV-LVHRIAWLMQVENA---SPYSIMAVTFTNKAAAEMRHRIEQLLGTS 81 (721)
T ss_pred HhcCHHHHHHHhCC--CCCEEEEecCCCCHHHH-HHHHHHHHHHcCCC---ChhHeEeeeccHHHHHHHHHHHHHHhccC
Confidence 45899999998643 46899999999999987 55555666543211 23458999999999999998888875310
Q ss_pred CceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccc---cccceeEEEEechhh
Q 003910 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKAL---TMSRVTYLVLDEADR 383 (787)
Q Consensus 326 ~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~---~l~~i~~lViDEah~ 383 (787)
...+.|+|...|...+.+... .+ .-.+-|+|+.+.
T Consensus 82 ----------------------~~~~~i~TfHs~~~~iLr~~~~~~g~-~~~f~i~d~~d~ 119 (721)
T PRK11773 82 ----------------------QGGMWVGTFHGLAHRLLRAHWQDANL-PQDFQILDSDDQ 119 (721)
T ss_pred ----------------------CCCCEEEcHHHHHHHHHHHHHHHhCC-CCCCeecCHHHH
Confidence 024667887777554332211 11 123457777763
No 231
>PRK06893 DNA replication initiation factor; Validated
Probab=95.59 E-value=0.041 Score=57.01 Aligned_cols=46 Identities=20% Similarity=0.312 Sum_probs=30.1
Q ss_pred cceeEEEEechhhhhc-CCChHHHHHHhhhcCC-CceEEEEeccCcHH
Q 003910 371 SRVTYLVLDEADRMFD-LGFEPQIRSIVGQIRP-DRQTLLFSATMPRK 416 (787)
Q Consensus 371 ~~i~~lViDEah~m~~-~~f~~~i~~il~~~~~-~~q~ll~SAT~~~~ 416 (787)
.++++|||||+|.+.. ..+...+..+++.+.. ..+++++|++.++.
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 4678999999998753 2344456666666544 34566777775443
No 232
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.46 E-value=0.021 Score=59.93 Aligned_cols=53 Identities=28% Similarity=0.353 Sum_probs=41.4
Q ss_pred CCCCCccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCC-CEEEEccCCCchhHHHHHHHHHHHhcC
Q 003910 218 FDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGR-DIIGIAKTGSGKTAAFVLPMIVHIMDQ 290 (787)
Q Consensus 218 ~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~gr-dvii~a~TGsGKTla~llp~l~~l~~~ 290 (787)
..+|..+.+|+++++|+.+.+.+. .-+ =+++.+|||||||.+ +..|+.++..+
T Consensus 99 R~Ip~~i~~~e~LglP~i~~~~~~-------------------~~~GLILVTGpTGSGKSTT-lAamId~iN~~ 152 (353)
T COG2805 99 RLIPSKIPTLEELGLPPIVRELAE-------------------SPRGLILVTGPTGSGKSTT-LAAMIDYINKH 152 (353)
T ss_pred eccCccCCCHHHcCCCHHHHHHHh-------------------CCCceEEEeCCCCCcHHHH-HHHHHHHHhcc
Confidence 457999999999999998766332 112 377889999999986 78888998765
No 233
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=95.41 E-value=0.37 Score=55.86 Aligned_cols=123 Identities=20% Similarity=0.297 Sum_probs=81.1
Q ss_pred CCEEEEecccccHHHHHHHHHHcCCc------eeeccCCCCHHHHHHHHHHhhc----CCccEEEEe--hhhhccCCCCC
Q 003910 471 GDVLVFASKKTTVDEIESQLAQKGFK------AAALHGDKDQASRMEILQKFKS----GVYHVLIAT--DVAARGLDIKS 538 (787)
Q Consensus 471 ~kvLVF~~s~~~a~~l~~~L~~~g~~------v~~lhg~~~~~eR~~~l~~F~~----G~~~VLVaT--~v~~rGlDip~ 538 (787)
+.|++|.++++-...+.+.+.+.|+- -.++...... -+.+++.|.. |.-.+|+|. .-+++|||+.+
T Consensus 630 gGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~--~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~D 707 (821)
T KOG1133|consen 630 GGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT--VEDVLEGYAEAAERGRGAILLAVVGGKLSEGINFSD 707 (821)
T ss_pred CcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc--HHHHHHHHHHHhhcCCCeEEEEEecccccccccccc
Confidence 79999999999999999999876531 1112222222 3456666643 555677776 77889999988
Q ss_pred --ccEEEEecCCCC------------------------HHHH--------HHHhhccCCCCCCCcEEEEEEccccHHHHH
Q 003910 539 --IKSVVNFDIARD------------------------MDMH--------VHRIGRTGRAGDKDGTAYTLVTQKEARFAG 584 (787)
Q Consensus 539 --v~~VI~~d~p~s------------------------~~~y--------~QriGR~gR~G~~~G~~i~l~~~~d~~~~~ 584 (787)
++.||..++|.. -+.| -|.||||-|.- ++--+++|+. .+++.
T Consensus 708 ~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~-~DYA~i~LlD---~RY~~ 783 (821)
T KOG1133|consen 708 DLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHR-KDYASIYLLD---KRYAR 783 (821)
T ss_pred ccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhh-ccceeEEEeh---hhhcC
Confidence 788888887752 1112 39999999975 5556666663 33332
Q ss_pred HHHHHHHHcCCCccHHHHHHHH
Q 003910 585 ELVNSLIAAGQNVSMELMDLAM 606 (787)
Q Consensus 585 ~l~~~l~~~~~~vp~~l~~~a~ 606 (787)
.+.+ .+|.|+.+...
T Consensus 784 p~~R-------KLp~WI~~~v~ 798 (821)
T KOG1133|consen 784 PLSR-------KLPKWIRKRVH 798 (821)
T ss_pred chhh-------hccHHHHhHhc
Confidence 2222 67888755443
No 234
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.40 E-value=0.054 Score=56.39 Aligned_cols=44 Identities=16% Similarity=0.252 Sum_probs=26.0
Q ss_pred eeEEEEechhhhhc-CCChHHHHHHhhhcCC-C-ceEEEEeccCcHH
Q 003910 373 VTYLVLDEADRMFD-LGFEPQIRSIVGQIRP-D-RQTLLFSATMPRK 416 (787)
Q Consensus 373 i~~lViDEah~m~~-~~f~~~i~~il~~~~~-~-~q~ll~SAT~~~~ 416 (787)
+++|||||+|.+.. ..+...+..+++.+.. . .++|+.|...|..
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~ 144 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQ 144 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHH
Confidence 46899999998753 2345556666666543 2 3445444434443
No 235
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.37 E-value=0.34 Score=58.17 Aligned_cols=132 Identities=15% Similarity=0.212 Sum_probs=69.4
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHH
Q 003910 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ 341 (787)
Q Consensus 262 grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~ 341 (787)
++-++++++||+|||.+....+..+.... +....+||-+-|--.+ ..+.++.++...++.+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~-----G~kkV~lit~Dt~Rig--A~eQL~~~a~~~gvpv~----------- 246 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVARE-----GADQLALLTTDSFRIG--ALEQLRIYGRILGVPVH----------- 246 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHc-----CCCeEEEecCcccchH--HHHHHHHHHHhCCCCcc-----------
Confidence 34578899999999987433322221111 1112234444332211 13445555554454332
Q ss_pred HHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcC-CChHHHHHHhhhcCCCceEEEEeccCc-HHHHH
Q 003910 342 FKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL-GFEPQIRSIVGQIRPDRQTLLFSATMP-RKVEK 419 (787)
Q Consensus 342 ~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~-~f~~~i~~il~~~~~~~q~ll~SAT~~-~~v~~ 419 (787)
++.+|..+.+.+. .+..+++|+||=+=+.... ....++..+.....+...+|+++||.. ..+.+
T Consensus 247 ----------~~~~~~~l~~al~----~~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~ 312 (767)
T PRK14723 247 ----------AVKDAADLRFALA----ALGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNE 312 (767)
T ss_pred ----------ccCCHHHHHHHHH----HhcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHH
Confidence 2335666655554 2345678888888764421 122333344444456667888888864 34555
Q ss_pred HHHHHh
Q 003910 420 LAREIL 425 (787)
Q Consensus 420 l~~~~l 425 (787)
++..|.
T Consensus 313 i~~~f~ 318 (767)
T PRK14723 313 VVHAYR 318 (767)
T ss_pred HHHHHh
Confidence 666664
No 236
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=95.34 E-value=0.092 Score=63.37 Aligned_cols=108 Identities=18% Similarity=0.123 Sum_probs=71.4
Q ss_pred CcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCc
Q 003910 248 PTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGI 327 (787)
Q Consensus 248 ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i 327 (787)
|+|-|.+++.. ...++++.|..|||||.+ ++.-+.+++.... .....+|+|+.|+..|.++.+.+.+.+...
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~-L~~ri~~ll~~~~---~~p~~IL~vTFt~~Aa~em~~Rl~~~l~~~-- 73 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRV-ITNKIAYLIQNCG---YKARNIAAVTFTNKAAREMKERVAKTLGKG-- 73 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHH-HHHHHHHHHHhcC---CCHHHeEEEeccHHHHHHHHHHHHHHhCcc--
Confidence 78899998864 356899999999999987 5555556554311 123458999999999999988887765310
Q ss_pred eEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhcc---ccccceeEEEEechhh
Q 003910 328 RVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKA---LTMSRVTYLVLDEADR 383 (787)
Q Consensus 328 ~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~---~~l~~i~~lViDEah~ 383 (787)
....|.|.|..+|...+-+.. ..+ .-.+-|+|+.+.
T Consensus 74 -------------------~~~~v~v~TfHs~a~~il~~~~~~~g~-~~~~~il~~~~~ 112 (664)
T TIGR01074 74 -------------------EARGLTISTFHTLGLDIIKREYNALGY-KSNFSLFDETDQ 112 (664)
T ss_pred -------------------ccCCeEEEeHHHHHHHHHHHHHHHhCC-CCCCEEeCHHHH
Confidence 013577888888765443321 111 123456777763
No 237
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=95.34 E-value=0.062 Score=60.53 Aligned_cols=145 Identities=12% Similarity=0.230 Sum_probs=84.9
Q ss_pred CEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHH-HHHHHHHHHHHHhhhcCceEEEEECCCChHHHH
Q 003910 264 DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRE-LAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF 342 (787)
Q Consensus 264 dvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~Ptre-La~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~ 342 (787)
-.++.+..|||||.+.++-++..++.. ..+..+||+.|+.. |..-++..+.......++....-....+. .+
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~-----~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~--~i 75 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAIN-----KKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM--EI 75 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhc-----CCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc--EE
Confidence 467899999999999888888877664 13466898989887 66777788877776666542221111100 00
Q ss_pred HHHhc-CCcEEEeCH-HHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHhhhcCC--CceEEEEeccCcHHHH
Q 003910 343 KELKA-GCEIVIATP-GRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRP--DRQTLLFSATMPRKVE 418 (787)
Q Consensus 343 ~~l~~-~~dIIV~Tp-~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~--~~q~ll~SAT~~~~v~ 418 (787)
.+.. +..|++..- ....+ ......+.++.||||..+.. ..+..++..++. ....+++|.+++....
T Consensus 76 -~~~~~g~~i~f~g~~d~~~~-----ik~~~~~~~~~idEa~~~~~----~~~~~l~~rlr~~~~~~~i~~t~NP~~~~~ 145 (396)
T TIGR01547 76 -KILNTGKKFIFKGLNDKPNK-----LKSGAGIAIIWFEEASQLTF----EDIKELIPRLRETGGKKFIIFSSNPESPLH 145 (396)
T ss_pred -EecCCCeEEEeecccCChhH-----hhCcceeeeehhhhhhhcCH----HHHHHHHHHhhccCCccEEEEEcCcCCCcc
Confidence 1122 455666442 11111 11233468999999998743 244455444542 2224788888765333
Q ss_pred HHHHHHh
Q 003910 419 KLAREIL 425 (787)
Q Consensus 419 ~l~~~~l 425 (787)
-+...|+
T Consensus 146 w~~~~f~ 152 (396)
T TIGR01547 146 WVKKRFI 152 (396)
T ss_pred HHHHHHH
Confidence 3444444
No 238
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.32 E-value=1.3 Score=49.70 Aligned_cols=71 Identities=14% Similarity=0.308 Sum_probs=53.5
Q ss_pred CCCE-EEEecccccHHHHHHHHHH----cCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEeh-----hhh-ccCCCCC
Q 003910 470 DGDV-LVFASKKTTVDEIESQLAQ----KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-----VAA-RGLDIKS 538 (787)
Q Consensus 470 ~~kv-LVF~~s~~~a~~l~~~L~~----~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-----v~~-rGlDip~ 538 (787)
++++ ||.|++++.|..+....++ .++.++++||+.+..++...|+ . ..-|+|||. ++- .++|+..
T Consensus 295 ~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk---~-g~EivVaTPgRlid~VkmKatn~~r 370 (731)
T KOG0339|consen 295 EGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK---E-GAEIVVATPGRLIDMVKMKATNLSR 370 (731)
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh---c-CCeEEEechHHHHHHHHhhccccee
Confidence 4565 6778999988877666554 4789999999999988776665 3 367999993 222 5789999
Q ss_pred ccEEEE
Q 003910 539 IKSVVN 544 (787)
Q Consensus 539 v~~VI~ 544 (787)
+.++|+
T Consensus 371 vS~LV~ 376 (731)
T KOG0339|consen 371 VSYLVL 376 (731)
T ss_pred eeEEEE
Confidence 888775
No 239
>PRK08727 hypothetical protein; Validated
Probab=95.31 E-value=0.044 Score=56.95 Aligned_cols=47 Identities=15% Similarity=0.150 Sum_probs=27.0
Q ss_pred cceeEEEEechhhhhcCC-ChHHHHHHhhhcCC-CceEEEEeccCcHHH
Q 003910 371 SRVTYLVLDEADRMFDLG-FEPQIRSIVGQIRP-DRQTLLFSATMPRKV 417 (787)
Q Consensus 371 ~~i~~lViDEah~m~~~~-f~~~i~~il~~~~~-~~q~ll~SAT~~~~v 417 (787)
.++++|||||+|.+.... ....+..+++.+.. ..++|+.|...|..+
T Consensus 92 ~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l 140 (233)
T PRK08727 92 EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGL 140 (233)
T ss_pred hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhh
Confidence 455789999999876432 23345555555433 334555555455544
No 240
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.22 E-value=0.17 Score=65.89 Aligned_cols=127 Identities=20% Similarity=0.163 Sum_probs=76.7
Q ss_pred CCCcHHHHHHHHHHHcC--CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhh
Q 003910 246 EKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (787)
Q Consensus 246 ~~ptp~Q~~ai~~il~g--rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~ 323 (787)
..+++.|.+|+..++.. +-++|.+..|+|||.. +-.++..+... ....+..++.++||---|..+.+
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~-l~~v~~~~~~l---~~~~~~~V~glAPTgrAAk~L~e------- 1034 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQ-FRAVMSAVNTL---PESERPRVVGLGPTHRAVGEMRS------- 1034 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHH-HHHHHHHHHHh---hcccCceEEEECCcHHHHHHHHh-------
Confidence 46899999999999975 5688999999999975 33333333211 11235678889999877764431
Q ss_pred hcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHH----HhccccccceeEEEEechhhhhcCCChHHHHHHhhh
Q 003910 324 SHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDML----KMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQ 399 (787)
Q Consensus 324 ~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l----~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~ 399 (787)
.|+... |-.+|+... ..........++||||||=++-. ..+..++..
T Consensus 1035 -~Gi~A~------------------------TI~s~L~~~~~~~~~~~~~~~~~~llIVDEaSMv~~----~~m~~Ll~~ 1085 (1747)
T PRK13709 1035 -AGVDAQ------------------------TLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVGN----TDMARAYAL 1085 (1747)
T ss_pred -cCcchh------------------------hHHHHhcccccccccccCCCCCCcEEEEEccccccH----HHHHHHHHh
Confidence 133221 212222110 01111223458999999996543 355566666
Q ss_pred cCC-CceEEEEecc
Q 003910 400 IRP-DRQTLLFSAT 412 (787)
Q Consensus 400 ~~~-~~q~ll~SAT 412 (787)
+.. ..++|++.=+
T Consensus 1086 ~~~~garvVLVGD~ 1099 (1747)
T PRK13709 1086 IAAGGGRAVSSGDT 1099 (1747)
T ss_pred hhcCCCEEEEecch
Confidence 653 5778877666
No 241
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.21 E-value=0.71 Score=53.16 Aligned_cols=167 Identities=17% Similarity=0.240 Sum_probs=79.1
Q ss_pred CCccccCCCHHHHHHHHHC-CC-CCCcHHHHHHHHH------------HHcCCCEEEEccCCCchhHHHHHHHHHHHhcC
Q 003910 225 KTFEDCGFSTQLMHAISKQ-GY-EKPTSIQCQALPI------------ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQ 290 (787)
Q Consensus 225 ~sf~~~~l~~~l~~~l~~~-g~-~~ptp~Q~~ai~~------------il~grdvii~a~TGsGKTla~llp~l~~l~~~ 290 (787)
..+...|+++.+...|... .- ..........+.. +..++.+++++++|+|||......+.......
T Consensus 299 ~~L~~~Gvs~~la~~L~~~l~~~~~~~~~~~~l~~~L~~~l~v~~~~~l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~ 378 (559)
T PRK12727 299 ELMDDYGFDAGLTRDVAMQIPADTELHRGRGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQH 378 (559)
T ss_pred HHHHHCCCCHHHHHHHHHhhhcccchhhHHHHHHHHHHHhcCcCccccccCCCEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 3455668888887776442 10 1111111122222 22456788999999999976332222222111
Q ss_pred cccccCCCCEEEEEcCc-HHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhcccc
Q 003910 291 PELQKEEGPIGVICAPT-RELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALT 369 (787)
Q Consensus 291 ~~~~~~~~p~vLIl~Pt-reLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~ 369 (787)
.....+||-+.+ |..+. +.++.+....++.+.. +.++..|...+. .
T Consensus 379 -----~gkkVaLIdtDtyRigA~---EQLk~ya~iLgv~v~~---------------------a~d~~~L~~aL~----~ 425 (559)
T PRK12727 379 -----APRDVALVTTDTQRVGGR---EQLHSYGRQLGIAVHE---------------------ADSAESLLDLLE----R 425 (559)
T ss_pred -----CCCceEEEecccccccHH---HHHHHhhcccCceeEe---------------------cCcHHHHHHHHH----H
Confidence 011223333333 33332 2233333323332211 123344555443 2
Q ss_pred ccceeEEEEechhhhhcC-CChHHHHHHhhhcCCCceEEEEeccCc-HHHHHHHHHHh
Q 003910 370 MSRVTYLVLDEADRMFDL-GFEPQIRSIVGQIRPDRQTLLFSATMP-RKVEKLAREIL 425 (787)
Q Consensus 370 l~~i~~lViDEah~m~~~-~f~~~i~~il~~~~~~~q~ll~SAT~~-~~v~~l~~~~l 425 (787)
+.++++||||.+=++... ....++..+. .......+|+++++.. ..+..+++.|.
T Consensus 426 l~~~DLVLIDTaG~s~~D~~l~eeL~~L~-aa~~~a~lLVLpAtss~~Dl~eii~~f~ 482 (559)
T PRK12727 426 LRDYKLVLIDTAGMGQRDRALAAQLNWLR-AARQVTSLLVLPANAHFSDLDEVVRRFA 482 (559)
T ss_pred hccCCEEEecCCCcchhhHHHHHHHHHHH-HhhcCCcEEEEECCCChhHHHHHHHHHH
Confidence 346789999999764211 1111222222 2233456778888864 45566666653
No 242
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.20 E-value=0.14 Score=65.91 Aligned_cols=65 Identities=29% Similarity=0.250 Sum_probs=45.9
Q ss_pred CCCcHHHHHHHHHHHcC--CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHH
Q 003910 246 EKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQI 314 (787)
Q Consensus 246 ~~ptp~Q~~ai~~il~g--rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi 314 (787)
..+++-|.+++..++.. +-++|.+..|+|||.+ +-.++..+.. +....+..++.++||---+..+
T Consensus 834 ~~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~-l~~i~~~~~~---l~e~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 834 EKLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQ-FRAVMSAVNM---LPESERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred cccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHH-HHHHHHHHHH---HhhccCceEEEEechHHHHHHH
Confidence 36999999999999965 6789999999999975 2222222211 1112456788899998777655
No 243
>PRK11054 helD DNA helicase IV; Provisional
Probab=95.16 E-value=0.061 Score=64.47 Aligned_cols=74 Identities=15% Similarity=0.137 Sum_probs=54.8
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhh
Q 003910 244 GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (787)
Q Consensus 244 g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~ 323 (787)
.-..+++-|++++-. ...+++|.|..|||||.+ ++.-+.+++.... .....+|+|+.|+..|..+.+.+...+.
T Consensus 193 e~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~v-l~~r~ayLl~~~~---~~~~~IL~ltft~~AA~em~eRL~~~lg 266 (684)
T PRK11054 193 ESSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSV-LVARAGWLLARGQ---AQPEQILLLAFGRQAAEEMDERIRERLG 266 (684)
T ss_pred cCCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHH-HHHHHHHHHHhCC---CCHHHeEEEeccHHHHHHHHHHHHHhcC
Confidence 335799999999853 345789999999999987 5555556554321 1234699999999999999888877653
No 244
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.11 E-value=0.35 Score=51.27 Aligned_cols=132 Identities=21% Similarity=0.328 Sum_probs=72.5
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcH--HHHHHHHHHHHHHhhhcCceEEEEECCCCh
Q 003910 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTR--ELAHQIYLETKKFAKSHGIRVSAVYGGMSK 338 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~Ptr--eLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~ 338 (787)
.+..+++++++|+|||..+.+.+. .+.. ......+|-+.+. ..+.||. .++...++.+..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~-~l~~------~~~~v~~i~~D~~ri~~~~ql~----~~~~~~~~~~~~------- 135 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAW-QFHG------KKKTVGFITTDHSRIGTVQQLQ----DYVKTIGFEVIA------- 135 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHH-HHHH------cCCeEEEEecCCCCHHHHHHHH----HHhhhcCceEEe-------
Confidence 446889999999999986443332 2211 1122334444332 3444443 333323333321
Q ss_pred HHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhc-CCChHHHHHHhhhcCCCceEEEEeccC-cHH
Q 003910 339 LDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFD-LGFEPQIRSIVGQIRPDRQTLLFSATM-PRK 416 (787)
Q Consensus 339 ~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~-~~f~~~i~~il~~~~~~~q~ll~SAT~-~~~ 416 (787)
..++..|...+..- .....+++||||-+=++.. ......+..++....++.-++.++||. ...
T Consensus 136 --------------~~~~~~l~~~l~~l-~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d 200 (270)
T PRK06731 136 --------------VRDEAAMTRALTYF-KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKD 200 (270)
T ss_pred --------------cCCHHHHHHHHHHH-HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHH
Confidence 13455555444321 1124678999999977532 112334455555556665677899985 557
Q ss_pred HHHHHHHHh
Q 003910 417 VEKLAREIL 425 (787)
Q Consensus 417 v~~l~~~~l 425 (787)
+...++.|-
T Consensus 201 ~~~~~~~f~ 209 (270)
T PRK06731 201 MIEIITNFK 209 (270)
T ss_pred HHHHHHHhC
Confidence 777777764
No 245
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.07 E-value=0.13 Score=62.74 Aligned_cols=42 Identities=26% Similarity=0.372 Sum_probs=27.8
Q ss_pred cceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEeccCc
Q 003910 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMP 414 (787)
Q Consensus 371 ~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~ 414 (787)
.+++++||||+|+|-...+ ..+.++|+..+....+||.+ |-+
T Consensus 119 ~~~KV~IIDEad~lt~~a~-NaLLK~LEEpP~~~~fIl~t-t~~ 160 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQGF-NALLKIVEEPPEHLKFIFAT-TEP 160 (824)
T ss_pred CCceEEEEechhhcCHHHH-HHHHHHHhCCCCCeEEEEEe-CCh
Confidence 5788999999999875432 35566666655555555544 543
No 246
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=94.97 E-value=0.16 Score=53.75 Aligned_cols=46 Identities=15% Similarity=0.282 Sum_probs=32.6
Q ss_pred cccccceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEeccC
Q 003910 367 ALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATM 413 (787)
Q Consensus 367 ~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~ 413 (787)
......+++|||||||.|-... ...+++.+........+++.+..+
T Consensus 124 ~~~~~~fKiiIlDEcdsmtsda-q~aLrr~mE~~s~~trFiLIcnyl 169 (346)
T KOG0989|consen 124 GYPCPPFKIIILDECDSMTSDA-QAALRRTMEDFSRTTRFILICNYL 169 (346)
T ss_pred CCCCCcceEEEEechhhhhHHH-HHHHHHHHhccccceEEEEEcCCh
Confidence 3446678999999999987543 335666677766666777777764
No 247
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=94.96 E-value=0.14 Score=52.55 Aligned_cols=42 Identities=12% Similarity=0.286 Sum_probs=24.3
Q ss_pred eeEEEEechhhhhcC-CChHHHHHHhhhcCCCceEEEEeccCc
Q 003910 373 VTYLVLDEADRMFDL-GFEPQIRSIVGQIRPDRQTLLFSATMP 414 (787)
Q Consensus 373 i~~lViDEah~m~~~-~f~~~i~~il~~~~~~~q~ll~SAT~~ 414 (787)
..+|||||+|.+... .+...+..++..+......++++++.+
T Consensus 91 ~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~ 133 (226)
T TIGR03420 91 ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAA 133 (226)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCC
Confidence 468999999987543 224456666655433223455565543
No 248
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=94.94 E-value=0.14 Score=58.73 Aligned_cols=111 Identities=14% Similarity=0.180 Sum_probs=58.3
Q ss_pred CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHH
Q 003910 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF 342 (787)
Q Consensus 263 rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~ 342 (787)
..+++++++|+|||.. +-.+.+.+... ..+..++++ +...+..++...++.-
T Consensus 149 ~~l~l~G~~G~GKThL-~~ai~~~~~~~-----~~~~~v~yi-~~~~~~~~~~~~~~~~--------------------- 200 (450)
T PRK00149 149 NPLFIYGGVGLGKTHL-LHAIGNYILEK-----NPNAKVVYV-TSEKFTNDFVNALRNN--------------------- 200 (450)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHHHh-----CCCCeEEEE-EHHHHHHHHHHHHHcC---------------------
Confidence 4589999999999975 33444444332 113445554 5555655443333210
Q ss_pred HHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCC-ChHHHHHHhhhcC-CCceEEEEeccCcHHHHHH
Q 003910 343 KELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG-FEPQIRSIVGQIR-PDRQTLLFSATMPRKVEKL 420 (787)
Q Consensus 343 ~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~-f~~~i~~il~~~~-~~~q~ll~SAT~~~~v~~l 420 (787)
+...+.. .+..+++|||||+|.+.... ....+..++..+. ...++++.|...|..+..+
T Consensus 201 ------------~~~~~~~-------~~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l 261 (450)
T PRK00149 201 ------------TMEEFKE-------KYRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGL 261 (450)
T ss_pred ------------cHHHHHH-------HHhcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHH
Confidence 1112222 12357789999999875432 1234445554443 3455555554555554433
No 249
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.89 E-value=0.11 Score=51.51 Aligned_cols=48 Identities=17% Similarity=0.241 Sum_probs=30.8
Q ss_pred EEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003910 265 IIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (787)
Q Consensus 265 vii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~ 321 (787)
+++.+++|+|||... +-++..... .+..++++.. .+...++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~-~~~~~~~~~-------~g~~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFA-LQFLYAGLA-------RGEPGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHH-HHHHHHHHH-------CCCcEEEEEC-CCCHHHHHHHHHHc
Confidence 689999999999853 333333322 2555777654 46666776666655
No 250
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=94.85 E-value=0.17 Score=60.19 Aligned_cols=148 Identities=18% Similarity=0.250 Sum_probs=90.7
Q ss_pred HHHCCCCCCcHHHHHHHHHHHcCC--CEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHH
Q 003910 240 ISKQGYEKPTSIQCQALPIILSGR--DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLE 317 (787)
Q Consensus 240 l~~~g~~~ptp~Q~~ai~~il~gr--dvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~ 317 (787)
+.....+.+..-|.+.+..++..+ -+++.|.=|-|||.+.-+.+. .+.... ..-.++|.+|+.+-++.+.+.
T Consensus 207 l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~-~~~~~~-----~~~~iiVTAP~~~nv~~Lf~f 280 (758)
T COG1444 207 LYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALA-AAARLA-----GSVRIIVTAPTPANVQTLFEF 280 (758)
T ss_pred HhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHH-HHHHhc-----CCceEEEeCCCHHHHHHHHHH
Confidence 444445666667777777777664 588899999999988665552 222211 034689999999999888888
Q ss_pred HHHHhhhcCceEEEEECCCChHHHHHHHh-cCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHH
Q 003910 318 TKKFAKSHGIRVSAVYGGMSKLDQFKELK-AGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSI 396 (787)
Q Consensus 318 ~~~~~~~~~i~v~~~~gg~~~~~~~~~l~-~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~i 396 (787)
+.+-+...|++-.+........ .... ....|=+.+|.... . ..++||||||=.|- .+.+..+
T Consensus 281 a~~~l~~lg~~~~v~~d~~g~~---~~~~~~~~~i~y~~P~~a~---------~-~~DllvVDEAAaIp----lplL~~l 343 (758)
T COG1444 281 AGKGLEFLGYKRKVAPDALGEI---REVSGDGFRIEYVPPDDAQ---------E-EADLLVVDEAAAIP----LPLLHKL 343 (758)
T ss_pred HHHhHHHhCCccccccccccce---eeecCCceeEEeeCcchhc---------c-cCCEEEEehhhcCC----hHHHHHH
Confidence 8877776665432222111000 0000 11224444443222 1 16789999998753 5566677
Q ss_pred hhhcCCCceEEEEeccCc
Q 003910 397 VGQIRPDRQTLLFSATMP 414 (787)
Q Consensus 397 l~~~~~~~q~ll~SAT~~ 414 (787)
+... +.++||.|+.
T Consensus 344 ~~~~----~rv~~sTTIh 357 (758)
T COG1444 344 LRRF----PRVLFSTTIH 357 (758)
T ss_pred Hhhc----CceEEEeeec
Confidence 6654 4689999984
No 251
>PRK06835 DNA replication protein DnaC; Validated
Probab=94.84 E-value=0.2 Score=54.77 Aligned_cols=45 Identities=20% Similarity=0.302 Sum_probs=28.6
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHH
Q 003910 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQI 314 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi 314 (787)
.+.++++.++||+|||.. +.++...++.. +..|++ ++..+|..++
T Consensus 182 ~~~~Lll~G~~GtGKThL-a~aIa~~l~~~-------g~~V~y-~t~~~l~~~l 226 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFL-SNCIAKELLDR-------GKSVIY-RTADELIEIL 226 (329)
T ss_pred cCCcEEEECCCCCcHHHH-HHHHHHHHHHC-------CCeEEE-EEHHHHHHHH
Confidence 457899999999999964 33444445432 344444 4556666544
No 252
>PRK12377 putative replication protein; Provisional
Probab=94.83 E-value=0.14 Score=53.66 Aligned_cols=45 Identities=13% Similarity=0.219 Sum_probs=28.1
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHH
Q 003910 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIY 315 (787)
Q Consensus 262 grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~ 315 (787)
...+++.+++|+|||.. +.++.+++... +..+ ++++..+|..++.
T Consensus 101 ~~~l~l~G~~GtGKThL-a~AIa~~l~~~-------g~~v-~~i~~~~l~~~l~ 145 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHL-AAAIGNRLLAK-------GRSV-IVVTVPDVMSRLH 145 (248)
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHHHHc-------CCCe-EEEEHHHHHHHHH
Confidence 36799999999999964 34444555332 3334 4445566766553
No 253
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=94.79 E-value=0.11 Score=63.33 Aligned_cols=110 Identities=16% Similarity=0.180 Sum_probs=71.8
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhc
Q 003910 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (787)
Q Consensus 246 ~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~ 325 (787)
..|+|-|.+++.. ....++|.|..|||||.+ ++.-+.+++..... ....+|+|+-|+..|..+.+.+.+++...
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~-l~~ria~Li~~~~i---~P~~IL~lTFT~kAA~em~~Rl~~~~~~~ 76 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRV-LTHRIAHLIAEKNV---APWNILAITFTNKAAREMKERVEKLLGPV 76 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHH-HHHHHHHHHHcCCC---CHHHeeeeeccHHHHHHHHHHHHHHhccc
Confidence 4589999999875 346899999999999987 55555566543211 12358999999999999988887764310
Q ss_pred CceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhcccc-c-cceeEEEEechhh
Q 003910 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALT-M-SRVTYLVLDEADR 383 (787)
Q Consensus 326 ~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~-l-~~i~~lViDEah~ 383 (787)
...+.|+|...|...+.+.... + -.-.+-|+|+.+.
T Consensus 77 ----------------------~~~~~i~TFHs~~~~iLr~~~~~~g~~~~f~i~d~~~~ 114 (726)
T TIGR01073 77 ----------------------AEDIWISTFHSMCVRILRRDIDRIGINRNFSIIDPTDQ 114 (726)
T ss_pred ----------------------cCCcEEEcHHHHHHHHHHHHHHHhCCCCCCCcCCHHHH
Confidence 1346778877775544332111 1 0223457777763
No 254
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=94.78 E-value=0.12 Score=59.01 Aligned_cols=110 Identities=14% Similarity=0.086 Sum_probs=59.5
Q ss_pred CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHH
Q 003910 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF 342 (787)
Q Consensus 263 rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~ 342 (787)
..+++.|++|+|||.. +-.+.+.+... ..+..++++ +..++...+...+....
T Consensus 142 npl~i~G~~G~GKTHL-l~Ai~~~l~~~-----~~~~~v~yv-~~~~f~~~~~~~l~~~~-------------------- 194 (450)
T PRK14087 142 NPLFIYGESGMGKTHL-LKAAKNYIESN-----FSDLKVSYM-SGDEFARKAVDILQKTH-------------------- 194 (450)
T ss_pred CceEEECCCCCcHHHH-HHHHHHHHHHh-----CCCCeEEEE-EHHHHHHHHHHHHHHhh--------------------
Confidence 4689999999999954 33333433321 123445554 44566666654443210
Q ss_pred HHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcC-CChHHHHHHhhhcCC-CceEEEEeccCcHHH
Q 003910 343 KELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL-GFEPQIRSIVGQIRP-DRQTLLFSATMPRKV 417 (787)
Q Consensus 343 ~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~-~f~~~i~~il~~~~~-~~q~ll~SAT~~~~v 417 (787)
+.+..+.. .+..+++|||||+|.+... .....+..+++.+.. ..|+|+.|-..|..+
T Consensus 195 --------------~~~~~~~~----~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l 253 (450)
T PRK14087 195 --------------KEIEQFKN----EICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELL 253 (450)
T ss_pred --------------hHHHHHHH----HhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 01111111 2346789999999977532 123456666665543 345555555555444
No 255
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=94.73 E-value=0.014 Score=57.55 Aligned_cols=124 Identities=20% Similarity=0.248 Sum_probs=53.6
Q ss_pred EEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHH
Q 003910 266 IGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKEL 345 (787)
Q Consensus 266 ii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l 345 (787)
|+.|+-|-|||.+.-+.+ ..+.. .....++|.+|+.+-++.+.+.+.+-+...+++...... ........
T Consensus 1 VltA~RGRGKSa~lGl~~-a~l~~------~~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~---~~~~~~~~ 70 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAA-AALIQ------KGKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKR---IGQIIKLR 70 (177)
T ss_dssp -EEE-TTSSHHHHHHHCC-CCSSS-----------EEEE-SS--S-HHHHHCC---------------------------
T ss_pred CccCCCCCCHHHHHHHHH-HHHHH------hcCceEEEecCCHHHHHHHHHHHHhhccccccccccccc---cccccccc
Confidence 578999999998633332 22211 112568999999998888877776665544443300000 00000001
Q ss_pred hcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEeccCc
Q 003910 346 KAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMP 414 (787)
Q Consensus 346 ~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~ 414 (787)
..+..|-+..|..+.... ...++||||||=.+- .+.+..++...+ .++||.|+.
T Consensus 71 ~~~~~i~f~~Pd~l~~~~-------~~~DlliVDEAAaIp----~p~L~~ll~~~~----~vv~stTi~ 124 (177)
T PF05127_consen 71 FNKQRIEFVAPDELLAEK-------PQADLLIVDEAAAIP----LPLLKQLLRRFP----RVVFSTTIH 124 (177)
T ss_dssp --CCC--B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHHCCSS----EEEEEEEBS
T ss_pred cccceEEEECCHHHHhCc-------CCCCEEEEechhcCC----HHHHHHHHhhCC----EEEEEeecc
Confidence 124667777776654421 235789999999754 456666654433 577888863
No 256
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=94.73 E-value=0.21 Score=56.35 Aligned_cols=48 Identities=15% Similarity=0.235 Sum_probs=26.8
Q ss_pred ceeEEEEechhhhhcCC-ChHHHHHHhhhc-CCCceEEEEeccCcHHHHH
Q 003910 372 RVTYLVLDEADRMFDLG-FEPQIRSIVGQI-RPDRQTLLFSATMPRKVEK 419 (787)
Q Consensus 372 ~i~~lViDEah~m~~~~-f~~~i~~il~~~-~~~~q~ll~SAT~~~~v~~ 419 (787)
.+++|||||+|.+.... ....+..++..+ ....++|+.|...|..+..
T Consensus 199 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~ 248 (405)
T TIGR00362 199 SVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPG 248 (405)
T ss_pred hCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhh
Confidence 46789999999876432 123344555444 2345555544445555443
No 257
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=94.65 E-value=0.058 Score=64.91 Aligned_cols=71 Identities=18% Similarity=0.116 Sum_probs=53.8
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhh
Q 003910 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (787)
Q Consensus 247 ~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~ 323 (787)
.|++-|.+++.. ....++|.|..|||||.+ ++.-+.+++.... .....+|+|+.|+..|..+.+.+.+++.
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~v-L~~Ria~Li~~~~---v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRV-ITNKIAHLIRGCG---YQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHH-HHHHHHHHHHhcC---CCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 478999999865 346889999999999987 5555566654311 1233589999999999999998887754
No 258
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=94.54 E-value=0.28 Score=53.25 Aligned_cols=39 Identities=15% Similarity=0.201 Sum_probs=25.2
Q ss_pred ceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEe
Q 003910 372 RVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (787)
Q Consensus 372 ~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~S 410 (787)
..++|||||+|.+........+..++...+...++|+.+
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 457899999998733223445666666666666655544
No 259
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=94.52 E-value=0.11 Score=60.81 Aligned_cols=50 Identities=14% Similarity=0.237 Sum_probs=32.0
Q ss_pred ccceeEEEEechhhhhcCC-ChHHHHHHhhhcCC-CceEEEEeccCcHHHHH
Q 003910 370 MSRVTYLVLDEADRMFDLG-FEPQIRSIVGQIRP-DRQTLLFSATMPRKVEK 419 (787)
Q Consensus 370 l~~i~~lViDEah~m~~~~-f~~~i~~il~~~~~-~~q~ll~SAT~~~~v~~ 419 (787)
+.++++||||++|.+.... ....+..+++.+.. ..++|+.|-..|..+..
T Consensus 375 y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~ 426 (617)
T PRK14086 375 YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVT 426 (617)
T ss_pred hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhh
Confidence 3457889999999876532 24456666666544 46677666656665543
No 260
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=94.52 E-value=0.058 Score=62.75 Aligned_cols=82 Identities=27% Similarity=0.460 Sum_probs=65.8
Q ss_pred HHHhhcCCccEEEEehhhhccCCCCCccEEEE--------ecCCCCHHHHHHHhhccCCCCCCCcEEEEEEcc---ccHH
Q 003910 513 LQKFKSGVYHVLIATDVAARGLDIKSIKSVVN--------FDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ---KEAR 581 (787)
Q Consensus 513 l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~--------~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~---~d~~ 581 (787)
-++|..|+..|-|-..+++-||-+..-+.|+| +.+||+.+.-+|..|||+|..+-.+--|+|+-. .+.+
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGErR 929 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGERR 929 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccchH
Confidence 46799999999999999999999987665554 889999999999999999998655655655543 4677
Q ss_pred HHHHHHHHHHHcC
Q 003910 582 FAGELVNSLIAAG 594 (787)
Q Consensus 582 ~~~~l~~~l~~~~ 594 (787)
++.-+.+.|+..+
T Consensus 930 FAS~VAKRLESLG 942 (1300)
T KOG1513|consen 930 FASIVAKRLESLG 942 (1300)
T ss_pred HHHHHHHHHHhhc
Confidence 8777777777654
No 261
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=94.47 E-value=0.12 Score=62.48 Aligned_cols=99 Identities=18% Similarity=0.212 Sum_probs=74.6
Q ss_pred EEEecCCCcchHHHH-HHhcCCcCCCCCEEEEecccccHHHHHHHHHH----cCCceeeccCCCCHHHHHHHHHHhhcCC
Q 003910 446 VVHVIPSDAEKLPWL-LEKLPGMIDDGDVLVFASKKTTVDEIESQLAQ----KGFKAAALHGDKDQASRMEILQKFKSGV 520 (787)
Q Consensus 446 ~~~~~~~~~~k~~~L-~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~----~g~~v~~lhg~~~~~eR~~~l~~F~~G~ 520 (787)
.+...+....|-... +..+.......++||.+|+..-|..+++.|.+ .++.+..+||+++..+|..++..+.+|.
T Consensus 285 ~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~ 364 (681)
T PRK10917 285 RLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGE 364 (681)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCC
Confidence 344445556665432 22222223455899999999988877776654 4689999999999999999999999999
Q ss_pred ccEEEEehh-hhccCCCCCccEEEE
Q 003910 521 YHVLIATDV-AARGLDIKSIKSVVN 544 (787)
Q Consensus 521 ~~VLVaT~v-~~rGlDip~v~~VI~ 544 (787)
.+|+|+|.. +...+.+.++.+||.
T Consensus 365 ~~IvVgT~~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 365 ADIVIGTHALIQDDVEFHNLGLVII 389 (681)
T ss_pred CCEEEchHHHhcccchhcccceEEE
Confidence 999999964 445677888888885
No 262
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.39 E-value=0.15 Score=53.71 Aligned_cols=53 Identities=15% Similarity=0.285 Sum_probs=35.2
Q ss_pred HHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHH
Q 003910 258 IILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETK 319 (787)
Q Consensus 258 ~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~ 319 (787)
++.++.++++.+++|+|||.. +.++.+.++. .|.. ++++++.+|+.++...+.
T Consensus 101 ~~~~~~nl~l~G~~G~GKThL-a~Ai~~~l~~-------~g~s-v~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 101 FFERGENLVLLGPPGVGKTHL-AIAIGNELLK-------AGIS-VLFITAPDLLSKLKAAFD 153 (254)
T ss_pred HhccCCcEEEECCCCCcHHHH-HHHHHHHHHH-------cCCe-EEEEEHHHHHHHHHHHHh
Confidence 344778999999999999975 3344444432 1344 455688888887654443
No 263
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=94.36 E-value=0.031 Score=68.28 Aligned_cols=100 Identities=20% Similarity=0.211 Sum_probs=80.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEEEecCC
Q 003910 469 DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIA 548 (787)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~~d~p 548 (787)
...++|||+.-....+.+...+...++.+...-++ ++-...+..|++ --.+||-+...+-|+|+-++.||+..++-
T Consensus 1220 ~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~t---~d~~dc~~~fk~-I~clll~~~~~~~GLNL~eA~Hvfl~ePi 1295 (1394)
T KOG0298|consen 1220 EQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGET---EDFDDCIICFKS-IDCLLLFVSKGSKGLNLIEATHVFLVEPI 1295 (1394)
T ss_pred cCceEEEEEehHHHHHHHHHHHHhhhhHhhhccCC---cchhhhhhhccc-ceEEEEEeccCcccccHHhhhhhheeccc
Confidence 45699999999999999998888777765554443 334566777776 33456678889999999999999999999
Q ss_pred CCHHHHHHHhhccCCCCCCCcEEE
Q 003910 549 RDMDMHVHRIGRTGRAGDKDGTAY 572 (787)
Q Consensus 549 ~s~~~y~QriGR~gR~G~~~G~~i 572 (787)
.|+..-.|.+||++|.|++..+.+
T Consensus 1296 LN~~~E~QAigRvhRiGQ~~pT~V 1319 (1394)
T KOG0298|consen 1296 LNPGDEAQAIGRVHRIGQKRPTFV 1319 (1394)
T ss_pred cCchHHHhhhhhhhhcccccchhh
Confidence 999999999999999996555544
No 264
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.34 E-value=0.5 Score=50.28 Aligned_cols=132 Identities=20% Similarity=0.305 Sum_probs=67.4
Q ss_pred CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEE-cC-cHHHHHHHHHHHHHHhhhcCceEEEEECCCChHH
Q 003910 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC-AP-TRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (787)
Q Consensus 263 rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl-~P-treLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~ 340 (787)
+-+++++++|+|||.+..-.+ .++.. .+.+++++ +- .|.-+. +.++.|+...++.+.....+..
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA-~~l~~-------~g~~V~li~~D~~r~~a~---~ql~~~~~~~~i~~~~~~~~~d--- 138 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLA-NKLKK-------QGKSVLLAAGDTFRAAAI---EQLEEWAKRLGVDVIKQKEGAD--- 138 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHH-HHHHh-------cCCEEEEEeCCCCCHHHH---HHHHHHHHhCCeEEEeCCCCCC---
Confidence 457788999999998633332 22321 24445544 33 343332 3455666555654432221111
Q ss_pred HHHHHhcCCcEEEeCHHHH-HHHHHhccccccceeEEEEechhhhhc-CCChHHHHHHhhhcC------CCceEEEEecc
Q 003910 341 QFKELKAGCEIVIATPGRL-IDMLKMKALTMSRVTYLVLDEADRMFD-LGFEPQIRSIVGQIR------PDRQTLLFSAT 412 (787)
Q Consensus 341 ~~~~l~~~~dIIV~Tp~~L-~~~l~~~~~~l~~i~~lViDEah~m~~-~~f~~~i~~il~~~~------~~~q~ll~SAT 412 (787)
|..+ .+.+.. .....+++||||=+-++.. ......+..+...+. ++--++.++||
T Consensus 139 ---------------p~~~~~~~l~~--~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~ 201 (272)
T TIGR00064 139 ---------------PAAVAFDAIQK--AKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDAT 201 (272)
T ss_pred ---------------HHHHHHHHHHH--HHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECC
Confidence 1111 111111 1124577888888876532 112234445554444 56678889998
Q ss_pred CcHHHHHHHHHHh
Q 003910 413 MPRKVEKLAREIL 425 (787)
Q Consensus 413 ~~~~v~~l~~~~l 425 (787)
........+..|.
T Consensus 202 ~~~~~~~~~~~f~ 214 (272)
T TIGR00064 202 TGQNALEQAKVFN 214 (272)
T ss_pred CCHHHHHHHHHHH
Confidence 7655444555554
No 265
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=94.34 E-value=0.18 Score=64.86 Aligned_cols=124 Identities=19% Similarity=0.128 Sum_probs=78.3
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcC
Q 003910 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (787)
Q Consensus 247 ~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~ 326 (787)
+.|+-|.++|. ..++++++.|..|||||.+.+--++..+... ..-..+|+|+=|+..|..+.+.+.+.+...-
T Consensus 1 ~~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~-----~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~ 73 (1232)
T TIGR02785 1 QWTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRG-----VDIDRLLVVTFTNAAAREMKERIEEALQKAL 73 (1232)
T ss_pred CCCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC-----CCHhhEEEEeccHHHHHHHHHHHHHHHHHHH
Confidence 36899999997 4688999999999999988555555555432 1123489999999999998888888654211
Q ss_pred ceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhcccccc--ceeEEEEechhh
Q 003910 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMS--RVTYLVLDEADR 383 (787)
Q Consensus 327 i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~--~i~~lViDEah~ 383 (787)
.- ..........+..-...-|+|...+...+-+.....- ...+=|+||...
T Consensus 74 -~~-----~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 74 -QQ-----EPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred -hc-----CchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 00 0000111111222245678998888655544332221 235567888874
No 266
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.25 E-value=0.48 Score=45.98 Aligned_cols=53 Identities=15% Similarity=0.282 Sum_probs=40.7
Q ss_pred ccceeEEEEechhhhhcCCC--hHHHHHHhhhcCCCceEEEEeccCcHHHHHHHH
Q 003910 370 MSRVTYLVLDEADRMFDLGF--EPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAR 422 (787)
Q Consensus 370 l~~i~~lViDEah~m~~~~f--~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~ 422 (787)
...+++|||||+=..++.++ ...+..++..-+...-+|+.+-.+|+.+.+++.
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 45789999999998877765 456777887777777777777778888766654
No 267
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.21 E-value=0.51 Score=53.50 Aligned_cols=131 Identities=19% Similarity=0.268 Sum_probs=68.2
Q ss_pred CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCc-HHHHHHHHHHHHHHhhhcCceEEEEECCCChHHH
Q 003910 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPT-RELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ 341 (787)
Q Consensus 263 rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~Pt-reLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~ 341 (787)
..+++++++|+|||.+... +..++... ....+||-+.+ |.. ..+.++.++...++.+.......
T Consensus 96 ~vI~lvG~~GsGKTTtaak-LA~~L~~~------g~kV~lV~~D~~R~a---a~eQL~~la~~~gvp~~~~~~~~----- 160 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAK-LARYFKKK------GLKVGLVAADTYRPA---AYDQLKQLAEKIGVPFYGDPDNK----- 160 (437)
T ss_pred eEEEEECCCCCcHHHHHHH-HHHHHHHc------CCeEEEecCCCCCHH---HHHHHHHHHHHcCCcEEecCCcc-----
Confidence 4688899999999986433 33333221 12233444443 222 23445555554455432111100
Q ss_pred HHHHhcCCcEEEeCHHH-HHHHHHhccccccceeEEEEechhhhhc-CCChHHHHHHhhhcCCCceEEEEeccCcHHHHH
Q 003910 342 FKELKAGCEIVIATPGR-LIDMLKMKALTMSRVTYLVLDEADRMFD-LGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEK 419 (787)
Q Consensus 342 ~~~l~~~~dIIV~Tp~~-L~~~l~~~~~~l~~i~~lViDEah~m~~-~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~ 419 (787)
.|.. +.+.+.. +...++||||.+-++.. ......+..+...+.++.-++.++|+.......
T Consensus 161 -------------d~~~i~~~al~~----~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~ 223 (437)
T PRK00771 161 -------------DAVEIAKEGLEK----FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKN 223 (437)
T ss_pred -------------CHHHHHHHHHHH----hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHH
Confidence 1111 1222221 12237899999965332 112334555666667777788889988766555
Q ss_pred HHHHHh
Q 003910 420 LAREIL 425 (787)
Q Consensus 420 l~~~~l 425 (787)
.++.|.
T Consensus 224 ~a~~F~ 229 (437)
T PRK00771 224 QAKAFH 229 (437)
T ss_pred HHHHHH
Confidence 565543
No 268
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.21 E-value=0.37 Score=51.34 Aligned_cols=54 Identities=17% Similarity=0.248 Sum_probs=33.8
Q ss_pred CCEEEEccCCCchhHHHHHHHHHHHhcC-cccc---cCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003910 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQ-PELQ---KEEGPIGVICAPTRELAHQIYLETKKF 321 (787)
Q Consensus 263 rdvii~a~TGsGKTla~llp~l~~l~~~-~~~~---~~~~p~vLIl~PtreLa~Qi~~~~~~~ 321 (787)
.+++++++|+.|||.. +.+.... +... ...-|.++|-+|...-..-.+..+-..
T Consensus 62 p~lLivG~snnGKT~I-----i~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~ 119 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMI-----IERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEA 119 (302)
T ss_pred CceEEecCCCCcHHHH-----HHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHH
Confidence 5899999999999974 3333322 2111 122477788888776666665555444
No 269
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=94.18 E-value=0.52 Score=56.85 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=16.1
Q ss_pred EEEEccCCCchhHHHHHHHHHHH
Q 003910 265 IIGIAKTGSGKTAAFVLPMIVHI 287 (787)
Q Consensus 265 vii~a~TGsGKTla~llp~l~~l 287 (787)
++|.++||+|||++ +..++..+
T Consensus 784 LYIyG~PGTGKTAT-VK~VLrEL 805 (1164)
T PTZ00112 784 LYISGMPGTGKTAT-VYSVIQLL 805 (1164)
T ss_pred EEEECCCCCCHHHH-HHHHHHHH
Confidence 35999999999987 44444544
No 270
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.15 E-value=0.3 Score=57.34 Aligned_cols=41 Identities=12% Similarity=0.220 Sum_probs=25.8
Q ss_pred ccceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEec
Q 003910 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSA 411 (787)
Q Consensus 370 l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SA 411 (787)
..+++++||||+|+|....+. .+.++|+.-+....+|+.|.
T Consensus 122 ~gr~KViIIDEah~Ls~~AaN-ALLKTLEEPP~~v~FILaTt 162 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAFN-AMLKTLEEPPEHVKFILATT 162 (700)
T ss_pred cCCceEEEEEChHhcCHHHHH-HHHHhhccCCCCceEEEEeC
Confidence 346889999999988654433 44455555445555555543
No 271
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.11 E-value=0.34 Score=54.40 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=18.2
Q ss_pred CCEEEEccCCCchhHHHHHHHHHHH
Q 003910 263 RDIIGIAKTGSGKTAAFVLPMIVHI 287 (787)
Q Consensus 263 rdvii~a~TGsGKTla~llp~l~~l 287 (787)
.++++.+++|+|||.. +..++..+
T Consensus 56 ~~~lI~G~~GtGKT~l-~~~v~~~l 79 (394)
T PRK00411 56 LNVLIYGPPGTGKTTT-VKKVFEEL 79 (394)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHH
Confidence 5799999999999986 44444444
No 272
>PRK05580 primosome assembly protein PriA; Validated
Probab=94.01 E-value=0.2 Score=60.45 Aligned_cols=95 Identities=18% Similarity=0.249 Sum_probs=72.8
Q ss_pred CCCcchHHHHHHhcCCcC-CCCCEEEEecccccHHHHHHHHHH-cCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEeh
Q 003910 451 PSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQ-KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD 528 (787)
Q Consensus 451 ~~~~~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~-~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~ 528 (787)
+....|....+..+.... ...++||.++++..+.++.+.|++ .+..+..+||+++..+|...+.....|..+|+|+|.
T Consensus 170 ~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTr 249 (679)
T PRK05580 170 VTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGAR 249 (679)
T ss_pred CCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEecc
Confidence 344556554444333222 245899999999999999999976 478899999999999999999999999999999996
Q ss_pred hhhccCCCCCccEEEEec
Q 003910 529 VAARGLDIKSIKSVVNFD 546 (787)
Q Consensus 529 v~~rGlDip~v~~VI~~d 546 (787)
.+.. +.+.++.+||.-+
T Consensus 250 sal~-~p~~~l~liVvDE 266 (679)
T PRK05580 250 SALF-LPFKNLGLIIVDE 266 (679)
T ss_pred HHhc-ccccCCCEEEEEC
Confidence 4332 5677888888654
No 273
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=93.95 E-value=0.3 Score=55.77 Aligned_cols=54 Identities=9% Similarity=0.254 Sum_probs=32.6
Q ss_pred cceeEEEEechhhhhcCC-ChHHHHHHhhhcC-CCceEEEEeccCcHHHHHHHHHH
Q 003910 371 SRVTYLVLDEADRMFDLG-FEPQIRSIVGQIR-PDRQTLLFSATMPRKVEKLAREI 424 (787)
Q Consensus 371 ~~i~~lViDEah~m~~~~-f~~~i~~il~~~~-~~~q~ll~SAT~~~~v~~l~~~~ 424 (787)
..+++|||||+|.+.... ....+..+++.+. ...|+|+.|.+.|..+..+...+
T Consensus 201 ~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL 256 (445)
T PRK12422 201 RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERL 256 (445)
T ss_pred ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHH
Confidence 467899999999876432 2344555555442 34566666656676665443333
No 274
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.94 E-value=0.34 Score=55.43 Aligned_cols=62 Identities=16% Similarity=0.207 Sum_probs=32.4
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEE
Q 003910 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVS 330 (787)
Q Consensus 262 grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~ 330 (787)
++-++++++||+|||.+....+-.+.... +....+||-+-+--+. ..+.++.|+...++.+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~-----G~~kV~LI~~Dt~Rig--A~EQLr~~AeilGVpv~ 317 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRH-----GASKVALLTTDSYRIG--GHEQLRIYGKILGVPVH 317 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhc-----CCCeEEEEeCCccchh--HHHHHHHHHHHhCCCee
Confidence 45688999999999987333222222121 1112344444442222 24556666665565443
No 275
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=93.87 E-value=0.33 Score=53.08 Aligned_cols=42 Identities=12% Similarity=0.028 Sum_probs=30.7
Q ss_pred CCcHHHHHHHHHHHcCC----CEEEEccCCCchhHHHHHHHHHHHhc
Q 003910 247 KPTSIQCQALPIILSGR----DIIGIAKTGSGKTAAFVLPMIVHIMD 289 (787)
Q Consensus 247 ~ptp~Q~~ai~~il~gr----dvii~a~TGsGKTla~llp~l~~l~~ 289 (787)
.++|||...+..++... -+|+++|.|.|||.. ...+...++.
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~-A~~~A~~llC 48 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRAL-AERLAAALLC 48 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHH-HHHHHHHHcC
Confidence 35789999998887542 488999999999975 3444555544
No 276
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.80 E-value=0.15 Score=52.52 Aligned_cols=107 Identities=14% Similarity=0.197 Sum_probs=60.0
Q ss_pred CEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHH
Q 003910 264 DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK 343 (787)
Q Consensus 264 dvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~ 343 (787)
-+++++++|+|||.. +-++.+.+... ..+.+++++ +..+....+...++.
T Consensus 36 ~l~l~G~~G~GKTHL-L~Ai~~~~~~~-----~~~~~v~y~-~~~~f~~~~~~~~~~----------------------- 85 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL-LQAIANEAQKQ-----HPGKRVVYL-SAEEFIREFADALRD----------------------- 85 (219)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHH-----CTTS-EEEE-EHHHHHHHHHHHHHT-----------------------
T ss_pred ceEEECCCCCCHHHH-HHHHHHHHHhc-----cccccceee-cHHHHHHHHHHHHHc-----------------------
Confidence 489999999999973 44444444332 124455655 333454443332221
Q ss_pred HHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCC-ChHHHHHHhhhcC-CCceEEEEeccCcHHH
Q 003910 344 ELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG-FEPQIRSIVGQIR-PDRQTLLFSATMPRKV 417 (787)
Q Consensus 344 ~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~-f~~~i~~il~~~~-~~~q~ll~SAT~~~~v 417 (787)
.....+.+ .+..+++||||.+|.+.... +...+..+++.+. ...++|+.|...|..+
T Consensus 86 ----------~~~~~~~~-------~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 86 ----------GEIEEFKD-------RLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp ----------TSHHHHHH-------HHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred ----------ccchhhhh-------hhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 01111222 24468899999999976531 3445666666653 4567777776776654
No 277
>PF13173 AAA_14: AAA domain
Probab=93.80 E-value=0.53 Score=43.79 Aligned_cols=39 Identities=21% Similarity=0.405 Sum_probs=27.0
Q ss_pred ceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEeccC
Q 003910 372 RVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATM 413 (787)
Q Consensus 372 ~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~ 413 (787)
.-.+|||||+|++-+ |...+..++... ++.++++.+...
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~~-~~~~ii~tgS~~ 99 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDNG-PNIKIILTGSSS 99 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHhc-cCceEEEEccch
Confidence 456899999999865 466777777654 456666655543
No 278
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=93.71 E-value=0.55 Score=56.05 Aligned_cols=52 Identities=25% Similarity=0.401 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHHHHhhcCCccEEE--EehhhhccCCCCCccEEEEecCCCCHHHHHHHhhcc
Q 003910 502 GDKDQASRMEILQKFKSGVYHVLI--ATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRT 561 (787)
Q Consensus 502 g~~~~~eR~~~l~~F~~G~~~VLV--aT~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~ 561 (787)
|..+...-..+++.+.+++..-++ ...+..+|+|+.. ....+..++|++-..
T Consensus 242 G~~d~~~i~~ll~aL~~~d~~~~l~~~~~l~~~g~~~~~--------~l~dLl~~l~~~~~~ 295 (830)
T PRK07003 242 GALDQTYMVRLLDALAAGDGPEILAVADEMALRSLSFST--------ALQDLASLLHRIAWA 295 (830)
T ss_pred CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHH--------HHHHHHHHHHHHHHH
Confidence 667777777788888887765433 3466667777632 133455566666443
No 279
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=93.71 E-value=0.37 Score=64.49 Aligned_cols=62 Identities=29% Similarity=0.302 Sum_probs=44.4
Q ss_pred CCCcHHHHHHHHHHHcC--CCEEEEccCCCchhHHHH---HHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHH
Q 003910 246 EKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFV---LPMIVHIMDQPELQKEEGPIGVICAPTRELAHQI 314 (787)
Q Consensus 246 ~~ptp~Q~~ai~~il~g--rdvii~a~TGsGKTla~l---lp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi 314 (787)
..+++.|.+|+..++.+ +-+++.+..|+|||.... -++...+ . ..+..++.++||-.-+.++
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~-~------~~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAF-E------SEQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHH-H------hcCCeEEEEeChHHHHHHH
Confidence 46899999999999876 456778999999997521 1222222 1 2366788899997776554
No 280
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.69 E-value=0.58 Score=52.72 Aligned_cols=133 Identities=15% Similarity=0.155 Sum_probs=68.2
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHH
Q 003910 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~ 340 (787)
.++-+.++++||+|||......+-.+++.. ......+|.+.+.-.+ ..+.+..++...++.+..+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~-----~~~~v~~i~~d~~rig--alEQL~~~a~ilGvp~~~v-------- 254 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRH-----GADKVALLTTDSYRIG--GHEQLRIYGKLLGVSVRSI-------- 254 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhc-----CCCeEEEEecCCcchh--HHHHHHHHHHHcCCceecC--------
Confidence 456688999999999986332222222221 1123456666663332 2344555665556554322
Q ss_pred HHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhc-CCChHHHHHHhhhcCCCceEEEEeccC-cHHHH
Q 003910 341 QFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFD-LGFEPQIRSIVGQIRPDRQTLLFSATM-PRKVE 418 (787)
Q Consensus 341 ~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~-~~f~~~i~~il~~~~~~~q~ll~SAT~-~~~v~ 418 (787)
-++..+...+. .+...++++||.+=+... .....++..+.....+...+|+++||. ...+.
T Consensus 255 -------------~~~~dl~~al~----~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~ 317 (420)
T PRK14721 255 -------------KDIADLQLMLH----ELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLD 317 (420)
T ss_pred -------------CCHHHHHHHHH----HhcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHH
Confidence 22222222221 245667888888643211 111223333322223455678899996 44566
Q ss_pred HHHHHHh
Q 003910 419 KLAREIL 425 (787)
Q Consensus 419 ~l~~~~l 425 (787)
+.+..|-
T Consensus 318 ~~~~~f~ 324 (420)
T PRK14721 318 EVISAYQ 324 (420)
T ss_pred HHHHHhc
Confidence 6666653
No 281
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=93.68 E-value=0.4 Score=52.45 Aligned_cols=39 Identities=15% Similarity=0.248 Sum_probs=24.4
Q ss_pred cceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEe
Q 003910 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (787)
Q Consensus 371 ~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~S 410 (787)
....+|||||+|.+... ....+..++...+...++|+.+
T Consensus 124 ~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il~~ 162 (337)
T PRK12402 124 ADYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFIIAT 162 (337)
T ss_pred CCCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEEEe
Confidence 45678999999987532 2334556666655555555543
No 282
>PRK09183 transposase/IS protein; Provisional
Probab=93.67 E-value=0.26 Score=52.04 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=18.8
Q ss_pred HHHHcCCCEEEEccCCCchhHH
Q 003910 257 PIILSGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 257 ~~il~grdvii~a~TGsGKTla 278 (787)
.++..+.++++.+|+|+|||..
T Consensus 97 ~~i~~~~~v~l~Gp~GtGKThL 118 (259)
T PRK09183 97 SFIERNENIVLLGPSGVGKTHL 118 (259)
T ss_pred CchhcCCeEEEEeCCCCCHHHH
Confidence 4466789999999999999965
No 283
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=93.62 E-value=0.29 Score=50.40 Aligned_cols=43 Identities=16% Similarity=0.311 Sum_probs=25.9
Q ss_pred ceeEEEEechhhhhcCCChHHHHHHhhhcCCCce-EEEEeccCcH
Q 003910 372 RVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ-TLLFSATMPR 415 (787)
Q Consensus 372 ~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q-~ll~SAT~~~ 415 (787)
..++|||||+|.+-.. -...+..++..+..... +++++++.++
T Consensus 90 ~~~~liiDdi~~l~~~-~~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDDA-QQIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCch-HHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 4568999999986432 23345555555443333 4777777543
No 284
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.57 E-value=0.51 Score=57.37 Aligned_cols=44 Identities=18% Similarity=0.180 Sum_probs=25.7
Q ss_pred cceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEeccCcHH
Q 003910 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRK 416 (787)
Q Consensus 371 ~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~ 416 (787)
.+++++||||||+|-... ...+.+++..-+....+|+. .|-+..
T Consensus 118 gk~KViIIDEAh~LT~eA-qNALLKtLEEPP~~vrFILa-TTe~~k 161 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSS-FNALLKTLEEPPEHVKFLLA-TTDPQK 161 (944)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhccCCCeEEEEE-CCCchh
Confidence 467899999999975332 23444555554444444443 454443
No 285
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=93.52 E-value=0.6 Score=50.76 Aligned_cols=45 Identities=22% Similarity=0.314 Sum_probs=32.7
Q ss_pred CCCCcHHHHHHHHHHH----cCC---CEEEEccCCCchhHHHHHHHHHHHhcC
Q 003910 245 YEKPTSIQCQALPIIL----SGR---DIIGIAKTGSGKTAAFVLPMIVHIMDQ 290 (787)
Q Consensus 245 ~~~ptp~Q~~ai~~il----~gr---dvii~a~TGsGKTla~llp~l~~l~~~ 290 (787)
+..++|+|..++..+. +++ -+|+.++.|.||+.. ...+...++..
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~l-A~~lA~~LlC~ 53 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAV-ALALAEHVLAS 53 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHH-HHHHHHHHhCC
Confidence 3567899999988776 333 488999999999875 44555666543
No 286
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=93.51 E-value=0.68 Score=48.92 Aligned_cols=17 Identities=29% Similarity=0.346 Sum_probs=14.7
Q ss_pred CCEEEEccCCCchhHHH
Q 003910 263 RDIIGIAKTGSGKTAAF 279 (787)
Q Consensus 263 rdvii~a~TGsGKTla~ 279 (787)
.++|+.+|+|+|||..+
T Consensus 43 ~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVA 59 (261)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 47899999999999753
No 287
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=93.49 E-value=0.2 Score=56.51 Aligned_cols=32 Identities=25% Similarity=0.234 Sum_probs=25.8
Q ss_pred CcHHHHHHHHHHHcCCCEEEEccCCCchhHHH
Q 003910 248 PTSIQCQALPIILSGRDIIGIAKTGSGKTAAF 279 (787)
Q Consensus 248 ptp~Q~~ai~~il~grdvii~a~TGsGKTla~ 279 (787)
+-......+..+..++++|+.+++|+|||..+
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA 211 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVA 211 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHH
Confidence 44555666777888999999999999999653
No 288
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=93.44 E-value=0.18 Score=60.40 Aligned_cols=97 Identities=20% Similarity=0.237 Sum_probs=72.9
Q ss_pred EecCCCcchHHH-HHHhcCCcCCCCCEEEEecccccHHHHHHHHHH----cCCceeeccCCCCHHHHHHHHHHhhcCCcc
Q 003910 448 HVIPSDAEKLPW-LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQ----KGFKAAALHGDKDQASRMEILQKFKSGVYH 522 (787)
Q Consensus 448 ~~~~~~~~k~~~-L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~----~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~ 522 (787)
...+....|-.. ++..+.......+++|.+|+..-|..+++.+.+ .++++..+||+++..+|..++....+|+.+
T Consensus 261 l~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~ 340 (630)
T TIGR00643 261 LQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIH 340 (630)
T ss_pred EECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCC
Confidence 334445556443 222333223455899999999998888777654 378999999999999999999999999999
Q ss_pred EEEEehh-hhccCCCCCccEEEE
Q 003910 523 VLIATDV-AARGLDIKSIKSVVN 544 (787)
Q Consensus 523 VLVaT~v-~~rGlDip~v~~VI~ 544 (787)
|+|+|.. +...+.+.++.+||.
T Consensus 341 IiVgT~~ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 341 LVVGTHALIQEKVEFKRLALVII 363 (630)
T ss_pred EEEecHHHHhccccccccceEEE
Confidence 9999964 445677888888875
No 289
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=93.40 E-value=0.61 Score=53.25 Aligned_cols=52 Identities=13% Similarity=0.346 Sum_probs=30.2
Q ss_pred ceeEEEEechhhhhcCC-ChHHHHHHhhhcC-CCceEEEEeccCcHHHHHHHHH
Q 003910 372 RVTYLVLDEADRMFDLG-FEPQIRSIVGQIR-PDRQTLLFSATMPRKVEKLARE 423 (787)
Q Consensus 372 ~i~~lViDEah~m~~~~-f~~~i~~il~~~~-~~~q~ll~SAT~~~~v~~l~~~ 423 (787)
.+++|||||+|.+.+.. ....+..++..+. ...++|+.|...|..+..+...
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~r 247 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDR 247 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHH
Confidence 46789999999876532 2234555554443 3445555555566665554433
No 290
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.39 E-value=0.3 Score=48.72 Aligned_cols=146 Identities=15% Similarity=0.088 Sum_probs=78.0
Q ss_pred HcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCCh-
Q 003910 260 LSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSK- 338 (787)
Q Consensus 260 l~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~- 338 (787)
+....+++...+|.|||.+++--++..+ ..|.+|+|+-=.+--. -+-+...+....++.. ...|...
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~--------g~G~~V~ivQFlKg~~--~~GE~~~l~~l~~v~~--~~~g~~~~ 87 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAV--------GHGKKVGVVQFIKGAW--STGERNLLEFGGGVEF--HVMGTGFT 87 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHH--------HCCCeEEEEEEecCCC--ccCHHHHHhcCCCcEE--EECCCCCc
Confidence 3556899999999999998776666665 3466677763222110 0112222211113332 2222211
Q ss_pred HHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCCh--HHHHHHhhhcCCCceEEEEeccCcHH
Q 003910 339 LDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFE--PQIRSIVGQIRPDRQTLLFSATMPRK 416 (787)
Q Consensus 339 ~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~--~~i~~il~~~~~~~q~ll~SAT~~~~ 416 (787)
+.. ...+.-+......+.... ..+.-..+++|||||+-..++.++. ..+..++..-++...+|+..-.+|+.
T Consensus 88 ~~~-----~~~~e~~~~~~~~~~~a~-~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~ 161 (191)
T PRK05986 88 WET-----QDRERDIAAAREGWEEAK-RMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRE 161 (191)
T ss_pred ccC-----CCcHHHHHHHHHHHHHHH-HHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHH
Confidence 000 000000001111122111 1222357899999999998888754 56777777766666677766678888
Q ss_pred HHHHHHH
Q 003910 417 VEKLARE 423 (787)
Q Consensus 417 v~~l~~~ 423 (787)
+.+++..
T Consensus 162 Lie~ADl 168 (191)
T PRK05986 162 LIEAADL 168 (191)
T ss_pred HHHhCch
Confidence 7666543
No 291
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=93.38 E-value=1 Score=53.55 Aligned_cols=42 Identities=19% Similarity=0.266 Sum_probs=24.5
Q ss_pred cceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEeccCc
Q 003910 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMP 414 (787)
Q Consensus 371 ~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~ 414 (787)
.+++++||||+|+|....+ ..+.++++.-+....+|+ .+|-+
T Consensus 118 g~~KV~IIDEah~Ls~~a~-NALLKtLEEPp~~v~FIL-~Tt~~ 159 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSF-NALLKTLEEPPEHVKFLL-ATTDP 159 (647)
T ss_pred CCCEEEEEechHhCCHHHH-HHHHHHHHcCCCCeEEEE-ecCCc
Confidence 4688999999998765433 234445555333333443 34433
No 292
>PLN03025 replication factor C subunit; Provisional
Probab=93.38 E-value=0.75 Score=50.15 Aligned_cols=39 Identities=21% Similarity=0.275 Sum_probs=23.6
Q ss_pred ceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEecc
Q 003910 372 RVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSAT 412 (787)
Q Consensus 372 ~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT 412 (787)
...+|||||+|.|.... ...+..++...+....++ ++++
T Consensus 99 ~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~~i-l~~n 137 (319)
T PLN03025 99 RHKIVILDEADSMTSGA-QQALRRTMEIYSNTTRFA-LACN 137 (319)
T ss_pred CeEEEEEechhhcCHHH-HHHHHHHHhcccCCceEE-EEeC
Confidence 57899999999976432 334455555544444444 4444
No 293
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=93.37 E-value=0.96 Score=53.23 Aligned_cols=148 Identities=12% Similarity=0.138 Sum_probs=81.3
Q ss_pred CcHHHHHHHHHH---HcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhh
Q 003910 248 PTSIQCQALPII---LSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS 324 (787)
Q Consensus 248 ptp~Q~~ai~~i---l~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~ 324 (787)
|.|.-.+-|..+ +..+-.++.+|=|.|||.+..+.++ ++... .+..++|.+|...-+.++.+.+++++..
T Consensus 170 ~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~-~La~f------~Gi~IlvTAH~~~ts~evF~rv~~~le~ 242 (752)
T PHA03333 170 PSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILA-AMISF------LEIDIVVQAQRKTMCLTLYNRVETVVHA 242 (752)
T ss_pred CChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHH-HHHHh------cCCeEEEECCChhhHHHHHHHHHHHHHH
Confidence 444444444444 3556788899999999987444433 43221 2567999999999999999998888874
Q ss_pred cCc--------eEEEEECCCChHHHH--HHHhcC-CcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHHH
Q 003910 325 HGI--------RVSAVYGGMSKLDQF--KELKAG-CEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQI 393 (787)
Q Consensus 325 ~~i--------~v~~~~gg~~~~~~~--~~l~~~-~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i 393 (787)
.+. ++..+.||...-.-. ...+.+ ..|.+++- ..+...-..+++||||||.-+.. +.+
T Consensus 243 lg~~~~fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ar-------s~~s~RG~~~DLLIVDEAAfI~~----~~l 311 (752)
T PHA03333 243 YQHKPWFPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLAS-------SPNAARGQNPDLVIVDEAAFVNP----GAL 311 (752)
T ss_pred hccccccCCCceEEEeeCCeeEEEEecCcccccCcceeEEecc-------cCCCcCCCCCCEEEEECcccCCH----HHH
Confidence 331 112222221100000 000001 12222221 01122223568999999998764 344
Q ss_pred HHHhhhcC-CCceEEEEeccC
Q 003910 394 RSIVGQIR-PDRQTLLFSATM 413 (787)
Q Consensus 394 ~~il~~~~-~~~q~ll~SAT~ 413 (787)
..++-.+. ....++++|.+.
T Consensus 312 ~aIlP~l~~~~~k~IiISS~~ 332 (752)
T PHA03333 312 LSVLPLMAVKGTKQIHISSPV 332 (752)
T ss_pred HHHHHHHccCCCceEEEeCCC
Confidence 44444443 356677777775
No 294
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.29 E-value=0.21 Score=57.92 Aligned_cols=93 Identities=19% Similarity=0.278 Sum_probs=71.5
Q ss_pred CcchHHHHHHhcCCcC-CCCCEEEEecccccHHHHHHHHHHc-CCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhh
Q 003910 453 DAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQK-GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVA 530 (787)
Q Consensus 453 ~~~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~~-g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~ 530 (787)
...|....+..+.... ...++||.+++..-+..+++.|++. +..+..+|+.++..+|.+++....+|+.+|+|+|..+
T Consensus 7 GsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsa 86 (505)
T TIGR00595 7 GSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSA 86 (505)
T ss_pred CCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHH
Confidence 4456555444443333 3458999999999999999999764 6789999999999999999999999999999999654
Q ss_pred hccCCCCCccEEEEec
Q 003910 531 ARGLDIKSIKSVVNFD 546 (787)
Q Consensus 531 ~rGlDip~v~~VI~~d 546 (787)
-. +.+.++.+||.-+
T Consensus 87 lf-~p~~~l~lIIVDE 101 (505)
T TIGR00595 87 LF-LPFKNLGLIIVDE 101 (505)
T ss_pred Hc-CcccCCCEEEEEC
Confidence 32 4577788888543
No 295
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=93.17 E-value=0.34 Score=47.61 Aligned_cols=53 Identities=13% Similarity=0.270 Sum_probs=40.6
Q ss_pred ccceeEEEEechhhhhcCCCh--HHHHHHhhhcCCCceEEEEeccCcHHHHHHHH
Q 003910 370 MSRVTYLVLDEADRMFDLGFE--PQIRSIVGQIRPDRQTLLFSATMPRKVEKLAR 422 (787)
Q Consensus 370 l~~i~~lViDEah~m~~~~f~--~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~ 422 (787)
-..+++|||||+-..++.++. ..+..++..-++...+|+..-.+|+.+.+++.
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD 149 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELAD 149 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCc
Confidence 357899999999988887754 46777787767777777777778888776654
No 296
>PRK04195 replication factor C large subunit; Provisional
Probab=93.16 E-value=0.45 Score=55.06 Aligned_cols=17 Identities=24% Similarity=0.386 Sum_probs=15.0
Q ss_pred CCCEEEEccCCCchhHH
Q 003910 262 GRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 262 grdvii~a~TGsGKTla 278 (787)
.+.+|+.+|+|+|||..
T Consensus 39 ~~~lLL~GppG~GKTtl 55 (482)
T PRK04195 39 KKALLLYGPPGVGKTSL 55 (482)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 46799999999999975
No 297
>PTZ00293 thymidine kinase; Provisional
Probab=93.12 E-value=0.43 Score=48.45 Aligned_cols=38 Identities=18% Similarity=0.037 Sum_probs=24.8
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCc
Q 003910 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPT 307 (787)
Q Consensus 262 grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~Pt 307 (787)
|+=.++++||+||||...+-.+.++. ..+.+++++-|.
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~y~--------~ag~kv~~~kp~ 41 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKRFT--------YSEKKCVVIKYS 41 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHHHH--------HcCCceEEEEec
Confidence 44568899999999976333333332 224557888885
No 298
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.11 E-value=0.96 Score=51.04 Aligned_cols=132 Identities=16% Similarity=0.177 Sum_probs=67.3
Q ss_pred CEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEE-cC-cHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHH
Q 003910 264 DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC-AP-TRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ 341 (787)
Q Consensus 264 dvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl-~P-treLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~ 341 (787)
-+++++++|+|||.+..- +..++.. .+.+++++ +- .|.-|.++ ++.++...++.+...+.+......
T Consensus 102 vi~lvG~~GvGKTTtaaK-LA~~l~~-------~G~kV~lV~~D~~R~aA~eQ---Lk~~a~~~~vp~~~~~~~~dp~~i 170 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTK-LAYYYQR-------KGFKPCLVCADTFRAGAFDQ---LKQNATKARIPFYGSYTESDPVKI 170 (429)
T ss_pred EEEEECCCCCCHHHHHHH-HHHHHHH-------CCCCEEEEcCcccchhHHHH---HHHHhhccCCeEEeecCCCCHHHH
Confidence 478899999999976332 2223321 13334443 42 35444433 455555445555433332221111
Q ss_pred HHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcC-CChHHHHHHhhhcCCCceEEEEeccCcHHHHHH
Q 003910 342 FKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL-GFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKL 420 (787)
Q Consensus 342 ~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~-~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l 420 (787)
. .+.+.. ..-..+++||||=+-++... .....+..+...+.|+.-++.++||........
T Consensus 171 ~-----------------~~~l~~--~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~ 231 (429)
T TIGR01425 171 A-----------------SEGVEK--FKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQ 231 (429)
T ss_pred H-----------------HHHHHH--HHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHH
Confidence 0 001110 01134677788877654321 123345555555667777888888877666666
Q ss_pred HHHHh
Q 003910 421 AREIL 425 (787)
Q Consensus 421 ~~~~l 425 (787)
++.|.
T Consensus 232 a~~F~ 236 (429)
T TIGR01425 232 AKAFK 236 (429)
T ss_pred HHHHH
Confidence 66663
No 299
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=93.11 E-value=2.3 Score=41.83 Aligned_cols=139 Identities=17% Similarity=0.147 Sum_probs=64.9
Q ss_pred EEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHH
Q 003910 265 IIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE 344 (787)
Q Consensus 265 vii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~ 344 (787)
+.+.-..|-|||.+++=-++..+ ..+.+|+|+-=.+-- --+-++..+....++.+. ..|.........
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~--------G~G~rV~ivQFlKg~--~~~GE~~~l~~l~~~~~~--~~g~~f~~~~~~ 73 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAA--------GHGMRVLIVQFLKGG--RYSGELKALKKLPNVEIE--RFGKGFVWRMNE 73 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHH--------CTT--EEEEESS--S--S--HHHHHHGGGT--EEE--E--TT----GGG
T ss_pred EEEEeCCCCCchHHHHHHHHHHH--------hCCCEEEEEEEecCC--CCcCHHHHHHhCCeEEEE--EcCCcccccCCC
Confidence 34455678899998777777665 557778887443330 111233333222223322 222211000000
Q ss_pred HhcCCcEEEeCHHHHHHHHHh--ccccccceeEEEEechhhhhcCCCh--HHHHHHhhhcCCCceEEEEeccCcHHHHHH
Q 003910 345 LKAGCEIVIATPGRLIDMLKM--KALTMSRVTYLVLDEADRMFDLGFE--PQIRSIVGQIRPDRQTLLFSATMPRKVEKL 420 (787)
Q Consensus 345 l~~~~dIIV~Tp~~L~~~l~~--~~~~l~~i~~lViDEah~m~~~~f~--~~i~~il~~~~~~~q~ll~SAT~~~~v~~l 420 (787)
-. .+ .......+.. ..+.-..+++|||||+-..++.++. ..+..++..-++...+|+..-.+|+.+.+.
T Consensus 74 ~~--~~-----~~~~~~~~~~a~~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~ 146 (172)
T PF02572_consen 74 EE--ED-----RAAAREGLEEAKEAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEA 146 (172)
T ss_dssp HH--HH-----HHHHHHHHHHHHHHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH
T ss_pred cH--HH-----HHHHHHHHHHHHHHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHh
Confidence 00 00 1111122221 2233457999999999988888764 457777777677777777777788887665
Q ss_pred HH
Q 003910 421 AR 422 (787)
Q Consensus 421 ~~ 422 (787)
+.
T Consensus 147 AD 148 (172)
T PF02572_consen 147 AD 148 (172)
T ss_dssp -S
T ss_pred CC
Confidence 53
No 300
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=93.09 E-value=0.41 Score=52.54 Aligned_cols=17 Identities=29% Similarity=0.372 Sum_probs=14.7
Q ss_pred CCEEEEccCCCchhHHH
Q 003910 263 RDIIGIAKTGSGKTAAF 279 (787)
Q Consensus 263 rdvii~a~TGsGKTla~ 279 (787)
.++|+.+|+|+|||..+
T Consensus 49 ~SmIl~GPPG~GKTTlA 65 (436)
T COG2256 49 HSMILWGPPGTGKTTLA 65 (436)
T ss_pred ceeEEECCCCCCHHHHH
Confidence 47999999999999753
No 301
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=93.09 E-value=0.25 Score=45.58 Aligned_cols=17 Identities=29% Similarity=0.559 Sum_probs=13.6
Q ss_pred ceeEEEEechhhhhcCC
Q 003910 372 RVTYLVLDEADRMFDLG 388 (787)
Q Consensus 372 ~i~~lViDEah~m~~~~ 388 (787)
...+|+|||+|.+....
T Consensus 58 ~~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 58 KPCVLFIDEIDKLFPKS 74 (132)
T ss_dssp TSEEEEEETGGGTSHHC
T ss_pred cceeeeeccchhccccc
Confidence 35789999999887654
No 302
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=93.03 E-value=1.4 Score=46.46 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=22.3
Q ss_pred CCcHHHHHHHHHHH----cCC-CEEEEccCCCchhHH
Q 003910 247 KPTSIQCQALPIIL----SGR-DIIGIAKTGSGKTAA 278 (787)
Q Consensus 247 ~ptp~Q~~ai~~il----~gr-dvii~a~TGsGKTla 278 (787)
-+++.+.+++..+. .+. .+++++++|+|||..
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl 59 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTL 59 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH
Confidence 35566666666543 223 588999999999975
No 303
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.02 E-value=0.94 Score=50.08 Aligned_cols=132 Identities=22% Similarity=0.306 Sum_probs=64.6
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCc-HHHHHHHHHHHHHHhhhcCceEEEEECCCChH
Q 003910 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPT-RELAHQIYLETKKFAKSHGIRVSAVYGGMSKL 339 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~Pt-reLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~ 339 (787)
.++.+++++|+|+|||....-.+ .++..+ ....++|-+-+ |.-| .++++.++...++.+.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA-~~l~~~------g~~V~lItaDtyR~gA---veQLk~yae~lgvpv~--------- 265 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLG-WQLLKQ------NRTVGFITTDTFRSGA---VEQFQGYADKLDVELI--------- 265 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHH-HHHHHc------CCeEEEEeCCccCccH---HHHHHHHhhcCCCCEE---------
Confidence 35678899999999997633332 223221 12334454433 3211 2234445443344322
Q ss_pred HHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcC-CChHHHHHHhhhcCCCceEEEEeccCc-HHH
Q 003910 340 DQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL-GFEPQIRSIVGQIRPDRQTLLFSATMP-RKV 417 (787)
Q Consensus 340 ~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~-~f~~~i~~il~~~~~~~q~ll~SAT~~-~~v 417 (787)
++.+|..|...+.... ....+++|+||=+=+.... .....+..++..+.+..-++.+|||.. ..+
T Consensus 266 ------------~~~dp~dL~~al~~l~-~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~ 332 (407)
T PRK12726 266 ------------VATSPAELEEAVQYMT-YVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADV 332 (407)
T ss_pred ------------ecCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccHHHH
Confidence 1234555544443211 1245678888877654311 122334444454555544566777643 344
Q ss_pred HHHHHHH
Q 003910 418 EKLAREI 424 (787)
Q Consensus 418 ~~l~~~~ 424 (787)
...+..|
T Consensus 333 ~~i~~~f 339 (407)
T PRK12726 333 MTILPKL 339 (407)
T ss_pred HHHHHhc
Confidence 4444443
No 304
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=92.96 E-value=0.72 Score=45.90 Aligned_cols=89 Identities=19% Similarity=0.128 Sum_probs=53.3
Q ss_pred CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHH
Q 003910 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF 342 (787)
Q Consensus 263 rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~ 342 (787)
.=.++++||.||||...+--+-++. ..+.+++|..|-..-- ++...+...-|...
T Consensus 5 ~l~~i~gpM~SGKT~eLl~r~~~~~--------~~g~~v~vfkp~iD~R-------------~~~~~V~Sr~G~~~---- 59 (201)
T COG1435 5 WLEFIYGPMFSGKTEELLRRARRYK--------EAGMKVLVFKPAIDTR-------------YGVGKVSSRIGLSS---- 59 (201)
T ss_pred EEEEEEccCcCcchHHHHHHHHHHH--------HcCCeEEEEecccccc-------------cccceeeeccCCcc----
Confidence 3457899999999986333322222 3356688888853211 12233333333322
Q ss_pred HHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhh
Q 003910 343 KELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR 383 (787)
Q Consensus 343 ~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~ 383 (787)
.-++|-.+..+.+.+......+ .+++|.||||+-
T Consensus 60 ------~A~~i~~~~~i~~~i~~~~~~~-~~~~v~IDEaQF 93 (201)
T COG1435 60 ------EAVVIPSDTDIFDEIAALHEKP-PVDCVLIDEAQF 93 (201)
T ss_pred ------cceecCChHHHHHHHHhcccCC-CcCEEEEehhHh
Confidence 3466777777888776543322 288999999996
No 305
>PRK08939 primosomal protein DnaI; Reviewed
Probab=92.85 E-value=0.87 Score=49.32 Aligned_cols=25 Identities=12% Similarity=0.167 Sum_probs=18.1
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHH
Q 003910 262 GRDIIGIAKTGSGKTAAFVLPMIVHI 287 (787)
Q Consensus 262 grdvii~a~TGsGKTla~llp~l~~l 287 (787)
++.+++.+++|+|||.. +.++.+.+
T Consensus 156 ~~gl~L~G~~G~GKThL-a~Aia~~l 180 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYL-LAAIANEL 180 (306)
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHH
Confidence 46899999999999964 33344444
No 306
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=92.83 E-value=0.42 Score=51.20 Aligned_cols=18 Identities=39% Similarity=0.521 Sum_probs=14.9
Q ss_pred CCCEEEEccCCCchhHHH
Q 003910 262 GRDIIGIAKTGSGKTAAF 279 (787)
Q Consensus 262 grdvii~a~TGsGKTla~ 279 (787)
++.++++++||+|||.+.
T Consensus 194 ~~vi~~vGptGvGKTTt~ 211 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTL 211 (282)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456889999999999763
No 307
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=92.81 E-value=0.33 Score=51.42 Aligned_cols=118 Identities=16% Similarity=0.166 Sum_probs=57.0
Q ss_pred HHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEEC-CCC
Q 003910 259 ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYG-GMS 337 (787)
Q Consensus 259 il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~g-g~~ 337 (787)
+..|.-+++.|++|+|||.. ++.++.++.. ..+..++++.- -+-..++...+..... ++.+..... ...
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l-~~~~~~~~~~------~~g~~vl~iS~-E~~~~~~~~r~~~~~~--~~~~~~~~~~~~~ 96 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTF-LREYALDLIT------QHGVRVGTISL-EEPVVRTARRLLGQYA--GKRLHLPDTVFIY 96 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHH-HHHHHHHHHH------hcCceEEEEEc-ccCHHHHHHHHHHHHh--CCCcccCCccccc
Confidence 34567889999999999974 3433333322 12455666643 2334444444433322 222211100 001
Q ss_pred hHHHH----HHHhcCCcEEE------eCHHHHHHHHHhccccccceeEEEEechhhhhcC
Q 003910 338 KLDQF----KELKAGCEIVI------ATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL 387 (787)
Q Consensus 338 ~~~~~----~~l~~~~dIIV------~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~ 387 (787)
....+ ..+.....+++ .|...+...+..-. .-..+++||||..+.+...
T Consensus 97 ~~~~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~~-~~~~~~~vvID~l~~l~~~ 155 (271)
T cd01122 97 TLEEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMA-VSHGIQHIIIDNLSIMVSD 155 (271)
T ss_pred cHHHHHHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHHHH-hcCCceEEEECCHHHHhcc
Confidence 11111 12221122222 15555655554322 1236889999999987643
No 308
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=92.71 E-value=0.31 Score=60.35 Aligned_cols=99 Identities=14% Similarity=0.184 Sum_probs=75.0
Q ss_pred EEEecCCCcchHHHHH-HhcCCcCCCCCEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhcCC
Q 003910 446 VVHVIPSDAEKLPWLL-EKLPGMIDDGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGV 520 (787)
Q Consensus 446 ~~~~~~~~~~k~~~L~-~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~G~ 520 (787)
.+...+....|-...+ ..+.......+++|.+||..-|.+.++.|++. ++.+..++|..+..++..+++.+++|.
T Consensus 475 ~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~ 554 (926)
T TIGR00580 475 RLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGK 554 (926)
T ss_pred EEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCC
Confidence 3444555666654332 22222234468999999999999988877653 577889999999999999999999999
Q ss_pred ccEEEEeh-hhhccCCCCCccEEEE
Q 003910 521 YHVLIATD-VAARGLDIKSIKSVVN 544 (787)
Q Consensus 521 ~~VLVaT~-v~~rGlDip~v~~VI~ 544 (787)
++|+|+|. .+...+.+.++.+||.
T Consensus 555 ~dIVIGTp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 555 IDILIGTHKLLQKDVKFKDLGLLII 579 (926)
T ss_pred ceEEEchHHHhhCCCCcccCCEEEe
Confidence 99999996 4556688888888885
No 309
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=92.70 E-value=0.71 Score=53.31 Aligned_cols=17 Identities=24% Similarity=0.374 Sum_probs=15.0
Q ss_pred CCCEEEEccCCCchhHH
Q 003910 262 GRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 262 grdvii~a~TGsGKTla 278 (787)
.+.+|+.+|+|+|||+.
T Consensus 216 p~GILLyGPPGTGKT~L 232 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLI 232 (512)
T ss_pred CcceEEECCCCCcHHHH
Confidence 36899999999999975
No 310
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.69 E-value=0.67 Score=53.28 Aligned_cols=46 Identities=15% Similarity=0.313 Sum_probs=26.8
Q ss_pred ccceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEeccCcHHH
Q 003910 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKV 417 (787)
Q Consensus 370 l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v 417 (787)
..+.+++||||+|.|....+. .+.+.++..++...+| |.+|-+..+
T Consensus 114 ~~~~KVvIIDEah~Ls~~A~N-aLLK~LEePp~~v~fI-latte~~Kl 159 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNSAFN-ALLKTLEEPAPHVKFI-LATTEVKKI 159 (491)
T ss_pred cCCceEEEEeChHhCCHHHHH-HHHHHHhCCCCCeEEE-EEeCChHHH
Confidence 357899999999987653332 3445555544444444 444543333
No 311
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.66 E-value=0.37 Score=56.71 Aligned_cols=42 Identities=19% Similarity=0.292 Sum_probs=25.6
Q ss_pred cceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEeccCc
Q 003910 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMP 414 (787)
Q Consensus 371 ~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~ 414 (787)
.+++++||||+|+|-...+ ..+.+++...+....+| |.+|-+
T Consensus 117 gk~KV~IIDEVh~LS~~A~-NALLKtLEEPP~~v~FI-LaTtd~ 158 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSF-NALLKTLEEPPEHVKFL-FATTDP 158 (702)
T ss_pred CCcEEEEEechHhcCHHHH-HHHHHHHhcCCCCcEEE-EEECCh
Confidence 4678999999998764433 34555566544444444 444533
No 312
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=92.63 E-value=0.22 Score=58.54 Aligned_cols=127 Identities=19% Similarity=0.209 Sum_probs=72.4
Q ss_pred CCCcHHHHHHHHHHHcC--CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHH-HHHHHHh
Q 003910 246 EKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIY-LETKKFA 322 (787)
Q Consensus 246 ~~ptp~Q~~ai~~il~g--rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~-~~~~~~~ 322 (787)
...+|||.+.+..+... +.++++..+-+|||.+ ++-++.+.+.+ ..+| +|++.||.++|..+. ..+..+.
T Consensus 15 ~~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~-~~n~~g~~i~~-----~P~~-~l~v~Pt~~~a~~~~~~rl~Pmi 87 (557)
T PF05876_consen 15 TDRTPYLREIMDALSDPSVREVVVMKSAQVGKTEL-LLNWIGYSIDQ-----DPGP-MLYVQPTDDAAKDFSKERLDPMI 87 (557)
T ss_pred CCCChhHHHHHHhcCCcCccEEEEEEcchhhHhHH-HHhhceEEEEe-----CCCC-EEEEEEcHHHHHHHHHHHHHHHH
Confidence 46789999999988754 6899999999999985 44444444333 2233 689999999999886 3444443
Q ss_pred hhcCceEEEEEC---CCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhh
Q 003910 323 KSHGIRVSAVYG---GMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (787)
Q Consensus 323 ~~~~i~v~~~~g---g~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~ 385 (787)
.....--..+.. .........+...+..|.++.-.. -..+.-..+.+|++||.|.+-
T Consensus 88 ~~sp~l~~~~~~~~~~~~~~t~~~k~f~gg~l~~~ga~S------~~~l~s~~~r~~~~DEvD~~p 147 (557)
T PF05876_consen 88 RASPVLRRKLSPSKSRDSGNTILYKRFPGGFLYLVGANS------PSNLRSRPARYLLLDEVDRYP 147 (557)
T ss_pred HhCHHHHHHhCchhhcccCCchhheecCCCEEEEEeCCC------CcccccCCcCEEEEechhhcc
Confidence 322110011111 000001111112244454443111 112223467899999999874
No 313
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=92.62 E-value=1.2 Score=49.44 Aligned_cols=24 Identities=38% Similarity=0.466 Sum_probs=17.6
Q ss_pred CCEEEEccCCCchhHHHHHHHHHHH
Q 003910 263 RDIIGIAKTGSGKTAAFVLPMIVHI 287 (787)
Q Consensus 263 rdvii~a~TGsGKTla~llp~l~~l 287 (787)
.++++.++||+|||++ +--++..+
T Consensus 43 ~n~~iyG~~GTGKT~~-~~~v~~~l 66 (366)
T COG1474 43 SNIIIYGPTGTGKTAT-VKFVMEEL 66 (366)
T ss_pred ccEEEECCCCCCHhHH-HHHHHHHH
Confidence 4799999999999987 33334444
No 314
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.62 E-value=1.1 Score=52.98 Aligned_cols=46 Identities=24% Similarity=0.387 Sum_probs=26.9
Q ss_pred ccceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEeccCcHHH
Q 003910 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKV 417 (787)
Q Consensus 370 l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v 417 (787)
..+++++||||+|+|....+ ..+.+++...++...+| |.+|-+..+
T Consensus 117 ~~~~KVvIIdev~~Lt~~a~-naLLk~LEepp~~~~fI-l~t~~~~kl 162 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTNAF-NALLKTLEEPPPHVKFI-FATTEPHKV 162 (576)
T ss_pred cCCceEEEEEChhhCCHHHH-HHHHHHHHcCCCCeEEE-EEeCChhhh
Confidence 35788999999998764322 34555555544444444 444544333
No 315
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=92.61 E-value=0.82 Score=50.68 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=18.4
Q ss_pred CCEEEEccCCCchhHHHHHHHHHHH
Q 003910 263 RDIIGIAKTGSGKTAAFVLPMIVHI 287 (787)
Q Consensus 263 rdvii~a~TGsGKTla~llp~l~~l 287 (787)
.++++++++|+|||.+ +-.++.++
T Consensus 41 ~~i~I~G~~GtGKT~l-~~~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAV-TKYVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHH-HHHHHHHH
Confidence 5799999999999975 44445554
No 316
>PRK13342 recombination factor protein RarA; Reviewed
Probab=92.59 E-value=0.79 Score=51.92 Aligned_cols=16 Identities=31% Similarity=0.426 Sum_probs=14.1
Q ss_pred CCEEEEccCCCchhHH
Q 003910 263 RDIIGIAKTGSGKTAA 278 (787)
Q Consensus 263 rdvii~a~TGsGKTla 278 (787)
..+|+.+|+|+|||..
T Consensus 37 ~~ilL~GppGtGKTtL 52 (413)
T PRK13342 37 SSMILWGPPGTGKTTL 52 (413)
T ss_pred ceEEEECCCCCCHHHH
Confidence 3799999999999975
No 317
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=92.57 E-value=0.63 Score=55.00 Aligned_cols=40 Identities=10% Similarity=0.154 Sum_probs=25.7
Q ss_pred ccceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEe
Q 003910 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (787)
Q Consensus 370 l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~S 410 (787)
....++|||||+|.|.... ...+.+.++..++...+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~a-~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHH-HHHHHHHHHhCCCCeEEEEEe
Confidence 4578899999999876432 234455555555555555544
No 318
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.51 E-value=1.7 Score=45.85 Aligned_cols=122 Identities=19% Similarity=0.361 Sum_probs=72.6
Q ss_pred HHHHHcCC-----CEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEE
Q 003910 256 LPIILSGR-----DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVS 330 (787)
Q Consensus 256 i~~il~gr-----dvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~ 330 (787)
+|.++.|+ .+|+.+|+|+||+ |+.-++..-. + -..+-+-+..|+..|.-+-.++.++
T Consensus 155 FPqlFtGkR~PwrgiLLyGPPGTGKS--YLAKAVATEA---------n-STFFSvSSSDLvSKWmGESEkLVkn------ 216 (439)
T KOG0739|consen 155 FPQLFTGKRKPWRGILLYGPPGTGKS--YLAKAVATEA---------N-STFFSVSSSDLVSKWMGESEKLVKN------ 216 (439)
T ss_pred chhhhcCCCCcceeEEEeCCCCCcHH--HHHHHHHhhc---------C-CceEEeehHHHHHHHhccHHHHHHH------
Confidence 56777774 5999999999999 4554444321 1 2577778888988887666665331
Q ss_pred EEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCC---hHHHHHH----hhhc---
Q 003910 331 AVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGF---EPQIRSI----VGQI--- 400 (787)
Q Consensus 331 ~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f---~~~i~~i----l~~~--- 400 (787)
|..+.+. ...++|.|||+|.|....- ....+.| |-++
T Consensus 217 ----------------------------LFemARe-----~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGV 263 (439)
T KOG0739|consen 217 ----------------------------LFEMARE-----NKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGV 263 (439)
T ss_pred ----------------------------HHHHHHh-----cCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhcc
Confidence 1122221 2456799999997764321 1222222 2222
Q ss_pred -CCCceEEEEecc-CcHHHHHHHHHHhCCC
Q 003910 401 -RPDRQTLLFSAT-MPRKVEKLAREILSDP 428 (787)
Q Consensus 401 -~~~~q~ll~SAT-~~~~v~~l~~~~l~~p 428 (787)
..+--+|++.|| +|=.+...++.-+...
T Consensus 264 G~d~~gvLVLgATNiPw~LDsAIRRRFekR 293 (439)
T KOG0739|consen 264 GNDNDGVLVLGATNIPWVLDSAIRRRFEKR 293 (439)
T ss_pred ccCCCceEEEecCCCchhHHHHHHHHhhcc
Confidence 234568999999 4545555555554433
No 319
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=92.39 E-value=0.39 Score=52.22 Aligned_cols=58 Identities=28% Similarity=0.251 Sum_probs=39.6
Q ss_pred CcHHHHHHHHHHH-cCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHH
Q 003910 248 PTSIQCQALPIIL-SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELA 311 (787)
Q Consensus 248 ptp~Q~~ai~~il-~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa 311 (787)
+++.|.+.|..+. .+.++|++++||||||.. +-.++..+...+ ..-+++++=.+.||.
T Consensus 129 ~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~~-----~~~rivtiEd~~El~ 187 (323)
T PRK13833 129 MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVASA-----PEDRLVILEDTAEIQ 187 (323)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcCC-----CCceEEEecCCcccc
Confidence 5677887776655 557999999999999974 555666654322 123567777777764
No 320
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=92.37 E-value=0.85 Score=52.78 Aligned_cols=17 Identities=24% Similarity=0.212 Sum_probs=14.6
Q ss_pred CEEEEccCCCchhHHHH
Q 003910 264 DIIGIAKTGSGKTAAFV 280 (787)
Q Consensus 264 dvii~a~TGsGKTla~l 280 (787)
.+|+++|.|+|||.++.
T Consensus 45 a~Lf~Gp~G~GKTT~Ar 61 (507)
T PRK06645 45 GYLLTGIRGVGKTTSAR 61 (507)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 68999999999998643
No 321
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=92.10 E-value=0.65 Score=51.85 Aligned_cols=49 Identities=14% Similarity=0.254 Sum_probs=35.8
Q ss_pred ceeEEEEechhhhhcC-CChHHHHHHhhhcCCC-ceEEEEeccCcHHHHHH
Q 003910 372 RVTYLVLDEADRMFDL-GFEPQIRSIVGQIRPD-RQTLLFSATMPRKVEKL 420 (787)
Q Consensus 372 ~i~~lViDEah~m~~~-~f~~~i~~il~~~~~~-~q~ll~SAT~~~~v~~l 420 (787)
++++|+||.++.+... .....+..+++.+... .|+|+.|..+|.++..+
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~ 225 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGL 225 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccc
Confidence 7789999999987654 3566677777777644 47787777788776543
No 322
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.01 E-value=1.6 Score=48.50 Aligned_cols=40 Identities=18% Similarity=0.232 Sum_probs=23.4
Q ss_pred cceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEecc
Q 003910 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSAT 412 (787)
Q Consensus 371 ~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT 412 (787)
....++||||+|.|....+. .+.+.+...++...+|+. +|
T Consensus 118 ~~~kviIIDEa~~l~~~a~n-aLLk~lEe~~~~~~fIl~-t~ 157 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFN-ALLKTLEEPPQHIKFILA-TT 157 (363)
T ss_pred CCceEEEEEChhhcCHHHHH-HHHHHHhcCCCCeEEEEE-cC
Confidence 45789999999997643222 344444444444444444 44
No 323
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=91.94 E-value=0.43 Score=51.95 Aligned_cols=66 Identities=29% Similarity=0.295 Sum_probs=42.6
Q ss_pred HHHHHCCCCCCcHHHHHHHHHH-HcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHH
Q 003910 238 HAISKQGYEKPTSIQCQALPII-LSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELA 311 (787)
Q Consensus 238 ~~l~~~g~~~ptp~Q~~ai~~i-l~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa 311 (787)
+.|.+.|+ +++.|.+.+..+ ..+++++++++||||||. ++-.++..+...+ ...++++|-.+.||.
T Consensus 125 ~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT-ll~aL~~~~~~~~-----~~~rivtIEd~~El~ 191 (319)
T PRK13894 125 DQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTT-LVNAIINEMVIQD-----PTERVFIIEDTGEIQ 191 (319)
T ss_pred HHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHhhhhcC-----CCceEEEEcCCCccc
Confidence 34444443 567777777654 466899999999999995 4555555543221 233567777777763
No 324
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=91.88 E-value=2 Score=46.45 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=19.7
Q ss_pred CC-EEEEccCCCchhHHHHHHHHHHHhcC
Q 003910 263 RD-IIGIAKTGSGKTAAFVLPMIVHIMDQ 290 (787)
Q Consensus 263 rd-vii~a~TGsGKTla~llp~l~~l~~~ 290 (787)
.+ +|+.+|.|+|||.+ ++.+...++..
T Consensus 24 ~halL~~Gp~G~Gktt~-a~~lA~~l~~~ 51 (325)
T COG0470 24 PHALLFYGPPGVGKTTA-ALALAKELLCE 51 (325)
T ss_pred CceeeeeCCCCCCHHHH-HHHHHHHHhCC
Confidence 45 99999999999986 44455555543
No 325
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=91.88 E-value=0.26 Score=53.14 Aligned_cols=60 Identities=22% Similarity=0.151 Sum_probs=43.5
Q ss_pred CCCCCcHHHHHHHHHHHcCC-CEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHH
Q 003910 244 GYEKPTSIQCQALPIILSGR-DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAH 312 (787)
Q Consensus 244 g~~~ptp~Q~~ai~~il~gr-dvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~ 312 (787)
.|...++-|...+..+...+ ++|+++.||||||.. +-.++.++ ...-++|.|=-|.||--
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl-LNal~~~i--------~~~eRvItiEDtaELql 214 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL-LNALSGFI--------DSDERVITIEDTAELQL 214 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH-HHHHHhcC--------CCcccEEEEeehhhhcc
Confidence 46789999999998888776 999999999999974 22222222 11226788877777743
No 326
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=91.85 E-value=1.3 Score=51.06 Aligned_cols=88 Identities=18% Similarity=0.172 Sum_probs=54.4
Q ss_pred CCCHH-HHHHHHHCCCCCCc----HHHHHHHHHHHcC--CCEEEEccCCCchhHHHHHHHHHHHh-cCcccccCCCCEEE
Q 003910 231 GFSTQ-LMHAISKQGYEKPT----SIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIM-DQPELQKEEGPIGV 302 (787)
Q Consensus 231 ~l~~~-l~~~l~~~g~~~pt----p~Q~~ai~~il~g--rdvii~a~TGsGKTla~llp~l~~l~-~~~~~~~~~~p~vL 302 (787)
++.++ |+.+|.+.--.+++ -+|.+-=.+|..- +-+|+++..|||||.+++-- +.+++ ..+... . +..+|
T Consensus 188 ~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHR-vAyLlY~~R~~l-~-~k~vl 264 (747)
T COG3973 188 GGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHR-VAYLLYGYRGPL-Q-AKPVL 264 (747)
T ss_pred chHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHH-HHHHHhcccccc-c-cCceE
Confidence 44444 55677766545554 3455555555543 45889999999999885443 44443 332211 1 22389
Q ss_pred EEcCcHHHHHHHHHHHHHH
Q 003910 303 ICAPTRELAHQIYLETKKF 321 (787)
Q Consensus 303 Il~PtreLa~Qi~~~~~~~ 321 (787)
|+.|.+.+..-+...+=.+
T Consensus 265 vl~PN~vFleYis~VLPeL 283 (747)
T COG3973 265 VLGPNRVFLEYISRVLPEL 283 (747)
T ss_pred EEcCcHHHHHHHHHhchhh
Confidence 9999999988766555554
No 327
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=91.78 E-value=1 Score=49.80 Aligned_cols=40 Identities=18% Similarity=0.138 Sum_probs=25.5
Q ss_pred ccceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEe
Q 003910 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (787)
Q Consensus 370 l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~S 410 (787)
...+.+|||||||.|-... ...+.++++.-+....+|++|
T Consensus 139 ~g~~rVviIDeAd~l~~~a-anaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRNA-ANAILKTLEEPPARALFILIS 178 (351)
T ss_pred cCCceEEEEEchhhcCHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 3467899999999975432 334566666644445555554
No 328
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=91.78 E-value=1.1 Score=54.33 Aligned_cols=46 Identities=20% Similarity=0.257 Sum_probs=26.3
Q ss_pred ceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEeccCcHHHHHHHH
Q 003910 372 RVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAR 422 (787)
Q Consensus 372 ~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~ 422 (787)
...+|||||+|++.. .+...++..+ ...+++++++|-++....+..
T Consensus 109 ~~~IL~IDEIh~Ln~----~qQdaLL~~l-E~g~IiLI~aTTenp~~~l~~ 154 (725)
T PRK13341 109 KRTILFIDEVHRFNK----AQQDALLPWV-ENGTITLIGATTENPYFEVNK 154 (725)
T ss_pred CceEEEEeChhhCCH----HHHHHHHHHh-cCceEEEEEecCCChHhhhhh
Confidence 456899999998642 1222333333 245677888775544333333
No 329
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=91.75 E-value=1 Score=43.95 Aligned_cols=42 Identities=12% Similarity=0.245 Sum_probs=27.3
Q ss_pred cceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEeccC
Q 003910 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATM 413 (787)
Q Consensus 371 ~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~ 413 (787)
...+++|||+||.|-.. -...+.++++.-+....+++++..+
T Consensus 101 ~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp SSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred CCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECCh
Confidence 46899999999987643 2445666677666566666555443
No 330
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=91.73 E-value=0.87 Score=53.38 Aligned_cols=136 Identities=19% Similarity=0.227 Sum_probs=82.5
Q ss_pred HcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhc--CceEEEEECCCC
Q 003910 260 LSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH--GIRVSAVYGGMS 337 (787)
Q Consensus 260 l~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~--~i~v~~~~gg~~ 337 (787)
+..+-.++..|==.|||.. +.+++..++.. ..+-.+++++|.+..+..+++++...+... .-.+..+.| ..
T Consensus 252 fkqk~tVflVPRR~GKTwi-vv~iI~~ll~s-----~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~ 324 (738)
T PHA03368 252 FRQRATVFLVPRRHGKTWF-LVPLIALALAT-----FRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ET 324 (738)
T ss_pred hhccceEEEecccCCchhh-HHHHHHHHHHh-----CCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cE
Confidence 4456778888888999985 44666655432 236779999999999999999998876632 111222222 11
Q ss_pred hHHHHHHHhcC--CcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHhhhc-CCCceEEEEeccCc
Q 003910 338 KLDQFKELKAG--CEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI-RPDRQTLLFSATMP 414 (787)
Q Consensus 338 ~~~~~~~l~~~--~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~-~~~~q~ll~SAT~~ 414 (787)
. ...+..+ .-|.++|- -..+...-..+++||||||+-+.+. .+..++-.+ ..+.++|++|.|..
T Consensus 325 I---~i~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~~----al~~ilp~l~~~n~k~I~ISS~Ns 391 (738)
T PHA03368 325 I---SFSFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRPD----AVQTIMGFLNQTNCKIIFVSSTNT 391 (738)
T ss_pred E---EEEecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCHH----HHHHHHHHHhccCccEEEEecCCC
Confidence 1 0011223 24555531 1122233457899999999987653 333443222 23789999999854
Q ss_pred H
Q 003910 415 R 415 (787)
Q Consensus 415 ~ 415 (787)
.
T Consensus 392 ~ 392 (738)
T PHA03368 392 G 392 (738)
T ss_pred C
Confidence 3
No 331
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.70 E-value=0.9 Score=51.86 Aligned_cols=16 Identities=31% Similarity=0.256 Sum_probs=13.8
Q ss_pred EEEEccCCCchhHHHH
Q 003910 265 IIGIAKTGSGKTAAFV 280 (787)
Q Consensus 265 vii~a~TGsGKTla~l 280 (787)
+|+++|.|+|||.++.
T Consensus 43 ~Lf~GP~GtGKTTlAr 58 (484)
T PRK14956 43 YIFFGPRGVGKTTIAR 58 (484)
T ss_pred EEEECCCCCCHHHHHH
Confidence 7999999999998643
No 332
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.66 E-value=1.2 Score=52.34 Aligned_cols=45 Identities=27% Similarity=0.340 Sum_probs=27.0
Q ss_pred ccceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEeccCcHH
Q 003910 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRK 416 (787)
Q Consensus 370 l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~ 416 (787)
....+++||||+|+|....+ ..+.+.+...+...-+|+.+ |-+..
T Consensus 116 ~~~~KVvIIDEah~Lt~~A~-NALLK~LEEpp~~~~fIL~t-te~~k 160 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTAGF-NALLKIVEEPPEHLIFIFAT-TEPEK 160 (584)
T ss_pred cCCceEEEEECCCcCCHHHH-HHHHHHHhcCCCCeEEEEEe-CChHh
Confidence 35788999999998865432 24455555544444444444 54433
No 333
>PRK10867 signal recognition particle protein; Provisional
Probab=91.65 E-value=2.1 Score=48.51 Aligned_cols=59 Identities=17% Similarity=0.156 Sum_probs=30.4
Q ss_pred CEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEE
Q 003910 264 DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVS 330 (787)
Q Consensus 264 dvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~ 330 (787)
-+++++++|+|||.+..-. ..++... .....+||-+-+.--+. .+.++.|+...++.+.
T Consensus 102 vI~~vG~~GsGKTTtaakL-A~~l~~~-----~G~kV~lV~~D~~R~aa--~eQL~~~a~~~gv~v~ 160 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKL-AKYLKKK-----KKKKVLLVAADVYRPAA--IEQLKTLGEQIGVPVF 160 (433)
T ss_pred EEEEECCCCCcHHHHHHHH-HHHHHHh-----cCCcEEEEEccccchHH--HHHHHHHHhhcCCeEE
Confidence 4788999999999864332 2333221 01223445444433221 2344555555566554
No 334
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.60 E-value=2.3 Score=47.76 Aligned_cols=126 Identities=16% Similarity=0.189 Sum_probs=63.9
Q ss_pred CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEE-EEEcCc-HHHHHHHHHHHHHHhhhcCceEEEEECCCChHH
Q 003910 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIG-VICAPT-RELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (787)
Q Consensus 263 rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~v-LIl~Pt-reLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~ 340 (787)
.-+++++++|+|||.+..-.+...... .+.++ |+-+-+ |..+. ..++.++...++.+..
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~-------~G~~V~Lit~Dt~R~aA~---eQLk~yAe~lgvp~~~--------- 284 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLH-------MGKSVSLYTTDNYRIAAI---EQLKRYADTMGMPFYP--------- 284 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHh-------cCCeEEEecccchhhhHH---HHHHHHHHhcCCCeee---------
Confidence 447889999999998744333222222 12233 444444 33332 2455555544443311
Q ss_pred HHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhh-cCCChHHHHHHhhhcC---CCceEEEEeccCcH-
Q 003910 341 QFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF-DLGFEPQIRSIVGQIR---PDRQTLLFSATMPR- 415 (787)
Q Consensus 341 ~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~-~~~f~~~i~~il~~~~---~~~q~ll~SAT~~~- 415 (787)
+..+..+...+. -..+++||||=+-++. +..-...+..++..+. +...+|.++||...
T Consensus 285 ------------~~~~~~l~~~l~-----~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~ 347 (432)
T PRK12724 285 ------------VKDIKKFKETLA-----RDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYH 347 (432)
T ss_pred ------------hHHHHHHHHHHH-----hCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHH
Confidence 011223333332 2457889999766542 1111223344444332 23467888999865
Q ss_pred HHHHHHHHH
Q 003910 416 KVEKLAREI 424 (787)
Q Consensus 416 ~v~~l~~~~ 424 (787)
.+...++.|
T Consensus 348 ~~~~~~~~f 356 (432)
T PRK12724 348 HTLTVLKAY 356 (432)
T ss_pred HHHHHHHHh
Confidence 566666655
No 335
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=91.60 E-value=1.8 Score=51.54 Aligned_cols=40 Identities=10% Similarity=0.171 Sum_probs=24.6
Q ss_pred ccceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEe
Q 003910 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (787)
Q Consensus 370 l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~S 410 (787)
+.+.++|||||+|+|....+ ..+.+++...+....+|+.+
T Consensus 117 ~gk~KVIIIDEad~Ls~~A~-NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hCCcEEEEEECccccCHHHH-HHHHHHHHhCCCCcEEEEEe
Confidence 35678999999998654322 24555555545555555544
No 336
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=91.59 E-value=1.5 Score=43.35 Aligned_cols=54 Identities=13% Similarity=0.282 Sum_probs=40.5
Q ss_pred cceeEEEEechhhhhcCCCh--HHHHHHhhhcCCCceEEEEeccCcHHHHHHHHHH
Q 003910 371 SRVTYLVLDEADRMFDLGFE--PQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREI 424 (787)
Q Consensus 371 ~~i~~lViDEah~m~~~~f~--~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~ 424 (787)
..+++||+||.--.+..++. ..+..++..-|....+|+..-..|+.+.+++...
T Consensus 121 ~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADlV 176 (198)
T COG2109 121 GKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADLV 176 (198)
T ss_pred CCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHHH
Confidence 46899999999988887754 4566777766666666666666898887777644
No 337
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=91.59 E-value=1.4 Score=45.75 Aligned_cols=52 Identities=10% Similarity=0.093 Sum_probs=31.9
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003910 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~ 321 (787)
.+.-+++.+++|+|||.. .+-++..+.. .+..+++++. .+-..++.+.+..+
T Consensus 23 ~g~~~~i~G~~G~GKTtl-~~~~~~~~~~-------~g~~~~yi~~-e~~~~~~~~~~~~~ 74 (230)
T PRK08533 23 AGSLILIEGDESTGKSIL-SQRLAYGFLQ-------NGYSVSYVST-QLTTTEFIKQMMSL 74 (230)
T ss_pred CCcEEEEECCCCCCHHHH-HHHHHHHHHh-------CCCcEEEEeC-CCCHHHHHHHHHHh
Confidence 467899999999999975 3333443332 2455677764 34445555555443
No 338
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=91.57 E-value=1.3 Score=50.87 Aligned_cols=148 Identities=13% Similarity=0.100 Sum_probs=84.8
Q ss_pred CCCcHHHHHHHHHHHc------C----CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHH
Q 003910 246 EKPTSIQCQALPIILS------G----RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIY 315 (787)
Q Consensus 246 ~~ptp~Q~~ai~~il~------g----rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~ 315 (787)
..+-|+|.-++..|+- + +-.+|..+-+-|||......++..++-. ...+-...|++|+.+-+.+..
T Consensus 60 ~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~----~~~~~~~~i~A~s~~qa~~~F 135 (546)
T COG4626 60 ESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLN----WRSGAGIYILAPSVEQAANSF 135 (546)
T ss_pred cccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhh----hhcCCcEEEEeccHHHHHHhh
Confidence 3567999999998881 1 2478888888899965432222222221 134667899999999999998
Q ss_pred HHHHHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHH---HHHh--ccccccceeEEEEechhhhhcCCCh
Q 003910 316 LETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLID---MLKM--KALTMSRVTYLVLDEADRMFDLGFE 390 (787)
Q Consensus 316 ~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~---~l~~--~~~~l~~i~~lViDEah~m~~~~f~ 390 (787)
..++....... + .. .......+.+..+...... .+.. +...-.+..+.||||.|...+.+
T Consensus 136 ~~ar~mv~~~~--------~--l~---~~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~-- 200 (546)
T COG4626 136 NPARDMVKRDD--------D--LR---DLCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE-- 200 (546)
T ss_pred HHHHHHHHhCc--------c--hh---hhhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH--
Confidence 88887765332 0 00 0000011222222222211 1111 22233467899999999866542
Q ss_pred HHHHHHhhhc--CCCceEEEEecc
Q 003910 391 PQIRSIVGQI--RPDRQTLLFSAT 412 (787)
Q Consensus 391 ~~i~~il~~~--~~~~q~ll~SAT 412 (787)
..+..+..-+ +++.+++..|..
T Consensus 201 ~~~~~~~~g~~ar~~~l~~~ITT~ 224 (546)
T COG4626 201 DMYSEAKGGLGARPEGLVVYITTS 224 (546)
T ss_pred HHHHHHHhhhccCcCceEEEEecC
Confidence 3444444433 466677776653
No 339
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=91.48 E-value=0.12 Score=50.94 Aligned_cols=46 Identities=28% Similarity=0.299 Sum_probs=31.7
Q ss_pred HHHHHhcCCcEEEeCHHHHHHHHHhcccc--ccceeEEEEechhhhhc
Q 003910 341 QFKELKAGCEIVIATPGRLIDMLKMKALT--MSRVTYLVLDEADRMFD 386 (787)
Q Consensus 341 ~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~--l~~i~~lViDEah~m~~ 386 (787)
..+.....++|||+++..|++-.....+. ...-.+|||||||.|.+
T Consensus 112 ~~r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 112 LARELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp HHHHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred HHHHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 33455567999999999998765443332 23457899999999765
No 340
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=91.41 E-value=0.79 Score=49.52 Aligned_cols=15 Identities=33% Similarity=0.459 Sum_probs=13.6
Q ss_pred CEEEEccCCCchhHH
Q 003910 264 DIIGIAKTGSGKTAA 278 (787)
Q Consensus 264 dvii~a~TGsGKTla 278 (787)
.+|+++|.|+|||..
T Consensus 164 SmIlWGppG~GKTtl 178 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTL 178 (554)
T ss_pred ceEEecCCCCchHHH
Confidence 699999999999964
No 341
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=91.41 E-value=0.47 Score=52.51 Aligned_cols=50 Identities=18% Similarity=0.295 Sum_probs=32.7
Q ss_pred CCCccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHh
Q 003910 220 VPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (787)
Q Consensus 220 ~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~ 288 (787)
+|..+.+++++++++.+.+.+ ...+.-+++++|||||||.. +-.++.++.
T Consensus 110 l~~~~~~l~~l~~~~~~~~~~------------------~~~~glilI~GpTGSGKTTt-L~aLl~~i~ 159 (358)
T TIGR02524 110 IPAEPPKLSKLDLPAAIIDAI------------------APQEGIVFITGATGSGKSTL-LAAIIRELA 159 (358)
T ss_pred cCCCCCCHHHcCCCHHHHHHH------------------hccCCEEEEECCCCCCHHHH-HHHHHHHHh
Confidence 344556788887775543321 12456799999999999975 455556554
No 342
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.38 E-value=1.3 Score=51.47 Aligned_cols=39 Identities=13% Similarity=0.205 Sum_probs=25.5
Q ss_pred cceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEe
Q 003910 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (787)
Q Consensus 371 ~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~S 410 (787)
.+++++||||+|+|....+ ..+.+++...++...+|+.+
T Consensus 118 ~~~kV~iIDE~~~ls~~a~-naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSF-NALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHH-HHHHHHHhccCCCeEEEEEE
Confidence 4678999999998765433 34555666655555555544
No 343
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=91.37 E-value=1.6 Score=44.95 Aligned_cols=52 Identities=17% Similarity=0.217 Sum_probs=29.6
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003910 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~ 321 (787)
.|..+++.+++|+|||...+ .++.+.+. .+..++++.- .+.+.++.+.++.+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~-~~~~~~~~-------~g~~~~~is~-e~~~~~i~~~~~~~ 70 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCL-HFAYKGLR-------DGDPVIYVTT-EESRESIIRQAAQF 70 (229)
T ss_pred CCeEEEEECCCCCChHHHHH-HHHHHHHh-------cCCeEEEEEc-cCCHHHHHHHHHHh
Confidence 45789999999999997533 33333222 1334566543 34445555444443
No 344
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=91.29 E-value=0.59 Score=48.53 Aligned_cols=111 Identities=23% Similarity=0.225 Sum_probs=54.8
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcC---cHHHHHHHHHHHHHHhhhcCceEEEEECCCC
Q 003910 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAP---TRELAHQIYLETKKFAKSHGIRVSAVYGGMS 337 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~P---treLa~Qi~~~~~~~~~~~~i~v~~~~gg~~ 337 (787)
.|.-++++|++|+|||.. ++-++.++..+ .+..++++.. ..+++..+... . .++....+..+..
T Consensus 12 ~G~l~lI~G~~G~GKT~~-~~~~~~~~~~~------~g~~vly~s~E~~~~~~~~r~~~~---~---~~~~~~~~~~~~~ 78 (242)
T cd00984 12 PGDLIIIAARPSMGKTAF-ALNIAENIAKK------QGKPVLFFSLEMSKEQLLQRLLAS---E---SGISLSKLRTGSL 78 (242)
T ss_pred CCeEEEEEeCCCCCHHHH-HHHHHHHHHHh------CCCceEEEeCCCCHHHHHHHHHHH---h---cCCCHHHHhcCCC
Confidence 456789999999999974 44444444332 1455777652 33444333211 1 1221111111111
Q ss_pred hHHHH-------HHHhcCCcEEE-----eCHHHHHHHHHhccccccceeEEEEechhhhhc
Q 003910 338 KLDQF-------KELKAGCEIVI-----ATPGRLIDMLKMKALTMSRVTYLVLDEADRMFD 386 (787)
Q Consensus 338 ~~~~~-------~~l~~~~dIIV-----~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~ 386 (787)
....+ ..+. ...+.| .|+..|...+..... -..+++||||=.+.|..
T Consensus 79 ~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~l~~~i~~~~~-~~~~~~vvID~l~~l~~ 137 (242)
T cd00984 79 SDEDWERLAEAIGELK-ELPIYIDDSSSLTVSDIRSRARRLKK-EHGLGLIVIDYLQLMSG 137 (242)
T ss_pred CHHHHHHHHHHHHHHh-cCCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcCchhcCC
Confidence 11111 1121 234444 355666655543221 12788999999997643
No 345
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=91.28 E-value=0.43 Score=55.68 Aligned_cols=90 Identities=19% Similarity=0.294 Sum_probs=72.4
Q ss_pred HHHHHHhcCCcCCCCCEEEEeccc----ccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehh-hh
Q 003910 457 LPWLLEKLPGMIDDGDVLVFASKK----TTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDV-AA 531 (787)
Q Consensus 457 ~~~L~~~L~~~~~~~kvLVF~~s~----~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v-~~ 531 (787)
+..++..+.......++.+-+||- .++..+.++|...++.+.++.|.+....|..++....+|.++|+|.|.+ +.
T Consensus 298 vVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQ 377 (677)
T COG1200 298 VVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQ 377 (677)
T ss_pred HHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhh
Confidence 344455555444566899999995 4556677777778999999999999999999999999999999999965 45
Q ss_pred ccCCCCCccEEEEec
Q 003910 532 RGLDIKSIKSVVNFD 546 (787)
Q Consensus 532 rGlDip~v~~VI~~d 546 (787)
..+++.++-.||.-.
T Consensus 378 d~V~F~~LgLVIiDE 392 (677)
T COG1200 378 DKVEFHNLGLVIIDE 392 (677)
T ss_pred cceeecceeEEEEec
Confidence 789999998888643
No 346
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=91.23 E-value=0.62 Score=48.48 Aligned_cols=52 Identities=17% Similarity=0.167 Sum_probs=34.5
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003910 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~ 321 (787)
.|.-+++.+++|+|||+..+-.+...+ . .+-.+|++. +.+-..|+.+.+..+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~-~-------~ge~~lyvs-~ee~~~~i~~~~~~~ 71 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGL-Q-------MGEPGIYVA-LEEHPVQVRRNMAQF 71 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-H-------cCCcEEEEE-eeCCHHHHHHHHHHh
Confidence 346799999999999985443333333 2 245577776 456677777776655
No 347
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=91.14 E-value=0.57 Score=52.04 Aligned_cols=50 Identities=18% Similarity=0.296 Sum_probs=34.4
Q ss_pred CCccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhc
Q 003910 221 PRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMD 289 (787)
Q Consensus 221 P~pi~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~ 289 (787)
|..+.++.++++++.+++.+. .....++++++||||||.. +..++.++..
T Consensus 126 ~~~~~~l~~lgl~~~~~~~l~------------------~~~GlilI~G~TGSGKTT~-l~al~~~i~~ 175 (372)
T TIGR02525 126 PSDIPDLKQMGIEPDLFNSLL------------------PAAGLGLICGETGSGKSTL-AASIYQHCGE 175 (372)
T ss_pred CCcCCCHHHcCCCHHHHHHHH------------------hcCCEEEEECCCCCCHHHH-HHHHHHHHHh
Confidence 444457888888886654332 2334689999999999975 5667777654
No 348
>CHL00181 cbbX CbbX; Provisional
Probab=91.14 E-value=2.6 Score=45.23 Aligned_cols=18 Identities=28% Similarity=0.357 Sum_probs=15.2
Q ss_pred CCCEEEEccCCCchhHHH
Q 003910 262 GRDIIGIAKTGSGKTAAF 279 (787)
Q Consensus 262 grdvii~a~TGsGKTla~ 279 (787)
+.++++.+++|+|||..+
T Consensus 59 ~~~ill~G~pGtGKT~lA 76 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVA 76 (287)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 457999999999999763
No 349
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.12 E-value=1.9 Score=48.99 Aligned_cols=56 Identities=20% Similarity=0.305 Sum_probs=33.5
Q ss_pred CCCccCCccccC---CCHHHHHHHHHC---CCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHH
Q 003910 220 VPRPVKTFEDCG---FSTQLMHAISKQ---GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 220 ~P~pi~sf~~~~---l~~~l~~~l~~~---g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla 278 (787)
+-.|--.|+++| |+.+.-+.+++. ..-.|.-+-+-.++ .-+.+|+.+|+|+|||+.
T Consensus 211 ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~---HVKGiLLyGPPGTGKTLi 272 (744)
T KOG0741|consen 211 IINPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIK---HVKGILLYGPPGTGKTLI 272 (744)
T ss_pred ccCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCcc---ceeeEEEECCCCCChhHH
Confidence 445667788884 677665555443 11112222222222 227899999999999985
No 350
>PRK14873 primosome assembly protein PriA; Provisional
Probab=91.05 E-value=0.66 Score=55.49 Aligned_cols=92 Identities=20% Similarity=0.207 Sum_probs=74.1
Q ss_pred cchHHHHHHhcCCcCCC-CCEEEEecccccHHHHHHHHHHc-C-CceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhh
Q 003910 454 AEKLPWLLEKLPGMIDD-GDVLVFASKKTTVDEIESQLAQK-G-FKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVA 530 (787)
Q Consensus 454 ~~k~~~L~~~L~~~~~~-~kvLVF~~s~~~a~~l~~~L~~~-g-~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~ 530 (787)
..|...++.++...+.. .++||.++....+..+...|+.. + ..+..+|++++..+|.+.+....+|+.+|+|.|..+
T Consensus 171 SGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSA 250 (665)
T PRK14873 171 EDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSA 250 (665)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEccee
Confidence 46777777777665544 47999999999999999999865 3 579999999999999999999999999999999654
Q ss_pred hccCCCCCccEEEEec
Q 003910 531 ARGLDIKSIKSVVNFD 546 (787)
Q Consensus 531 ~rGlDip~v~~VI~~d 546 (787)
.- +-++++..||..+
T Consensus 251 vF-aP~~~LgLIIvdE 265 (665)
T PRK14873 251 VF-APVEDLGLVAIWD 265 (665)
T ss_pred EE-eccCCCCEEEEEc
Confidence 32 3566667777544
No 351
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=91.02 E-value=3.2 Score=40.57 Aligned_cols=55 Identities=18% Similarity=0.312 Sum_probs=31.2
Q ss_pred cceeEEEEechhhhh-cCCChHHHHHHhhhcCCCceEEEEeccCcHHHHHHHHHHh
Q 003910 371 SRVTYLVLDEADRMF-DLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREIL 425 (787)
Q Consensus 371 ~~i~~lViDEah~m~-~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l 425 (787)
...++||+|....+. +......+..+.....+..-++.+.+.......+.+..+.
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~~ 136 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAFN 136 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHH
Confidence 356778899988643 1112333444444444566677777776555555555553
No 352
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=90.90 E-value=2 Score=50.62 Aligned_cols=46 Identities=13% Similarity=0.273 Sum_probs=25.5
Q ss_pred ccceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEeccCcHHH
Q 003910 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKV 417 (787)
Q Consensus 370 l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v 417 (787)
.....++||||+|+|....+. .+.+.+...+... +++|.+|-+..+
T Consensus 117 ~~~~kViIIDE~~~Lt~~a~n-aLLKtLEepp~~~-ifIlatt~~~ki 162 (559)
T PRK05563 117 EAKYKVYIIDEVHMLSTGAFN-ALLKTLEEPPAHV-IFILATTEPHKI 162 (559)
T ss_pred cCCeEEEEEECcccCCHHHHH-HHHHHhcCCCCCe-EEEEEeCChhhC
Confidence 456889999999987543222 3334444433333 444445544433
No 353
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.88 E-value=1.5 Score=47.86 Aligned_cols=56 Identities=20% Similarity=0.425 Sum_probs=31.5
Q ss_pred ceeEEEEechhhhhcC-C----ChH--HH-HHHhhhc-------CCCceEEEEecc-CcHHHHHHHHHHhCC
Q 003910 372 RVTYLVLDEADRMFDL-G----FEP--QI-RSIVGQI-------RPDRQTLLFSAT-MPRKVEKLAREILSD 427 (787)
Q Consensus 372 ~i~~lViDEah~m~~~-~----f~~--~i-~~il~~~-------~~~~q~ll~SAT-~~~~v~~l~~~~l~~ 427 (787)
....|.|||+|.|... | ++. .+ ..+|-++ .....++++-|| +|=++.+.++.-+-.
T Consensus 304 APStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrRRlEK 375 (491)
T KOG0738|consen 304 APSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWDIDEALRRRLEK 375 (491)
T ss_pred CCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCcchHHHHHHHHhh
Confidence 4567999999988652 1 111 11 1222222 223457778888 676776666655443
No 354
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.82 E-value=0.8 Score=53.98 Aligned_cols=46 Identities=22% Similarity=0.331 Sum_probs=25.0
Q ss_pred cceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEeccCcHHHH
Q 003910 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVE 418 (787)
Q Consensus 371 ~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~ 418 (787)
....+|||||||+|.... ...+.+++... +..-++++.+|-+..+.
T Consensus 118 g~~kVIIIDEad~Lt~~a-~naLLk~LEEP-~~~~ifILaTt~~~kll 163 (624)
T PRK14959 118 GRYKVFIIDEAHMLTREA-FNALLKTLEEP-PARVTFVLATTEPHKFP 163 (624)
T ss_pred CCceEEEEEChHhCCHHH-HHHHHHHhhcc-CCCEEEEEecCChhhhh
Confidence 467899999999875321 12333344332 23334555555544443
No 355
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.76 E-value=1.3 Score=52.43 Aligned_cols=44 Identities=16% Similarity=0.286 Sum_probs=25.8
Q ss_pred cceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEeccCcHH
Q 003910 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRK 416 (787)
Q Consensus 371 ~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~ 416 (787)
.+++++||||+|+|....|. .+.+.++..+....+| |.+|-+..
T Consensus 123 g~~KV~IIDEvh~Ls~~a~N-aLLKtLEEPP~~~~fI-L~Ttd~~k 166 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFN-AMLKTLEEPPEYLKFV-LATTDPQK 166 (618)
T ss_pred CCceEEEEEChhhCCHHHHH-HHHHhcccCCCCeEEE-EEECCchh
Confidence 46889999999997654433 3444444434444444 44454433
No 356
>PRK10689 transcription-repair coupling factor; Provisional
Probab=90.68 E-value=0.74 Score=58.47 Aligned_cols=99 Identities=11% Similarity=0.123 Sum_probs=72.7
Q ss_pred EEEecCCCcchHHHHHHh-cCCcCCCCCEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhcCC
Q 003910 446 VVHVIPSDAEKLPWLLEK-LPGMIDDGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGV 520 (787)
Q Consensus 446 ~~~~~~~~~~k~~~L~~~-L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~G~ 520 (787)
.+...+....|-...+.. +.......++||.||++.-|.+++..|.+. ++.+..+++..+..++..++..+++|.
T Consensus 624 ~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~ 703 (1147)
T PRK10689 624 RLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGK 703 (1147)
T ss_pred EEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCC
Confidence 344455566676432211 111123568999999999999988887753 467888999999999999999999999
Q ss_pred ccEEEEeh-hhhccCCCCCccEEEE
Q 003910 521 YHVLIATD-VAARGLDIKSIKSVVN 544 (787)
Q Consensus 521 ~~VLVaT~-v~~rGlDip~v~~VI~ 544 (787)
++|||+|. .+...+.+..+.+||.
T Consensus 704 ~dIVVgTp~lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 704 IDILIGTHKLLQSDVKWKDLGLLIV 728 (1147)
T ss_pred CCEEEECHHHHhCCCCHhhCCEEEE
Confidence 99999995 4445577778888774
No 357
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=90.67 E-value=1.1 Score=50.25 Aligned_cols=140 Identities=18% Similarity=0.123 Sum_probs=77.1
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHH
Q 003910 236 LMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIY 315 (787)
Q Consensus 236 l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~ 315 (787)
++..|.+ .+..+-..|..+.-..-.|.- .|.+=.|||||...++ -+.++.. +...-+++|.+-|+.|+.++.
T Consensus 152 ~l~~ies-kIanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~-Kaa~lh~-----knPd~~I~~Tfftk~L~s~~r 223 (660)
T COG3972 152 LLDTIES-KIANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAH-KAAELHS-----KNPDSRIAFTFFTKILASTMR 223 (660)
T ss_pred HHHHHHH-HHhcccchhheeeeecCCchh-hhhcccCCCchhHHHH-HHHHHhc-----CCCCceEEEEeehHHHHHHHH
Confidence 4444433 234455566666544445544 5677789999986322 2333322 233457899999999999999
Q ss_pred HHHHHHhhhc--------CceEEEEECCCChHHHH---HHHhcCCcEEEeCHH----HHHHHHHhccccccceeEEEEec
Q 003910 316 LETKKFAKSH--------GIRVSAVYGGMSKLDQF---KELKAGCEIVIATPG----RLIDMLKMKALTMSRVTYLVLDE 380 (787)
Q Consensus 316 ~~~~~~~~~~--------~i~v~~~~gg~~~~~~~---~~l~~~~dIIV~Tp~----~L~~~l~~~~~~l~~i~~lViDE 380 (787)
..+.+|+-.. .+.++.-.||....... .....-..+-++--+ .+-..+-....++.-+++|.|||
T Consensus 224 ~lv~~F~f~~~e~~pdW~~~l~~h~wgG~t~~g~y~~~~~~~~~~~~~fsg~g~~F~~aC~eli~~~~~~~~yD~ilIDE 303 (660)
T COG3972 224 TLVPEFFFMRVEKQPDWGTKLFCHNWGGLTKEGFYGMYRYICHYYEIPFSGFGNGFDAACKELIADINNKKAYDYILIDE 303 (660)
T ss_pred HHHHHHHHHHhhcCCCccceEEEeccCCCCCCcchHHHHHHhcccccccCCCCcchHHHHHHHHHhhhccccccEEEecc
Confidence 9999887432 24455556666543322 221111122221111 11111111222366789999999
Q ss_pred hhh
Q 003910 381 ADR 383 (787)
Q Consensus 381 ah~ 383 (787)
++-
T Consensus 304 ~QD 306 (660)
T COG3972 304 SQD 306 (660)
T ss_pred ccc
Confidence 996
No 358
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.65 E-value=0.62 Score=54.79 Aligned_cols=140 Identities=18% Similarity=0.258 Sum_probs=77.7
Q ss_pred HcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEE-EcCcHHHHHHHHHHHHHHhhhcCceEEEE------
Q 003910 260 LSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI-CAPTRELAHQIYLETKKFAKSHGIRVSAV------ 332 (787)
Q Consensus 260 l~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLI-l~PtreLa~Qi~~~~~~~~~~~~i~v~~~------ 332 (787)
--|+.+-+++|.|+|||.+ +.+|.+++.- ...++++ =+|-+++-.++.+ +.....+-..+++
T Consensus 492 ~pGe~vALVGPSGsGKSTi--asLL~rfY~P------tsG~IllDG~~i~~~~~~~lr---~~Ig~V~QEPvLFs~sI~e 560 (716)
T KOG0058|consen 492 RPGEVVALVGPSGSGKSTI--ASLLLRFYDP------TSGRILLDGVPISDINHKYLR---RKIGLVGQEPVLFSGSIRE 560 (716)
T ss_pred CCCCEEEEECCCCCCHHHH--HHHHHHhcCC------CCCeEEECCeehhhcCHHHHH---HHeeeeeccceeecccHHH
Confidence 3578899999999999975 5667777652 2333333 4666666655543 2211111111111
Q ss_pred ---ECCCC--h------------HHHHHHHhcCCcEEEeCHHHHHHHHHhcc-----ccccceeEEEEechhhhhcCCCh
Q 003910 333 ---YGGMS--K------------LDQFKELKAGCEIVIATPGRLIDMLKMKA-----LTMSRVTYLVLDEADRMFDLGFE 390 (787)
Q Consensus 333 ---~gg~~--~------------~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~-----~~l~~i~~lViDEah~m~~~~f~ 390 (787)
||-.. . .+.+..+..+++-.|+.-|..+.-=++.. --+++..++|+|||---+|..-+
T Consensus 561 NI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE 640 (716)
T KOG0058|consen 561 NIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESE 640 (716)
T ss_pred HHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhH
Confidence 11111 0 01112222344455554443322111111 12567889999999999998888
Q ss_pred HHHHHHhhhcCCCceEEEEec
Q 003910 391 PQIRSIVGQIRPDRQTLLFSA 411 (787)
Q Consensus 391 ~~i~~il~~~~~~~q~ll~SA 411 (787)
..+...+..+..++ +++.=|
T Consensus 641 ~lVq~aL~~~~~~r-TVlvIA 660 (716)
T KOG0058|consen 641 YLVQEALDRLMQGR-TVLVIA 660 (716)
T ss_pred HHHHHHHHHhhcCC-eEEEEe
Confidence 89999998887774 444444
No 359
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=90.63 E-value=2.9 Score=47.39 Aligned_cols=60 Identities=18% Similarity=0.153 Sum_probs=31.0
Q ss_pred CEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEE
Q 003910 264 DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSA 331 (787)
Q Consensus 264 dvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~ 331 (787)
-+++++++|+|||.+..-. ..++... .....+||-+-++-.+ ..+.++.++...++.+..
T Consensus 101 vi~~vG~~GsGKTTtaakL-A~~l~~~-----~g~kV~lV~~D~~R~~--a~~QL~~~a~~~gvp~~~ 160 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKL-AYYLKKK-----QGKKVLLVACDLYRPA--AIEQLKVLGQQVGVPVFA 160 (428)
T ss_pred EEEEECCCCCcHHHHHHHH-HHHHHHh-----CCCeEEEEeccccchH--HHHHHHHHHHhcCCceEe
Confidence 5788999999999863332 2333211 1123345555543322 122455555545655443
No 360
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=90.62 E-value=0.71 Score=47.49 Aligned_cols=134 Identities=13% Similarity=0.144 Sum_probs=65.6
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhc-----CceEEEEECC
Q 003910 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH-----GIRVSAVYGG 335 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~-----~i~v~~~~gg 335 (787)
.|.-+++.+++|+|||+..+--+...+.. .+-.+++++- .+-..++.+.+..+.-.. .-....+...
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~-------~ge~vlyvs~-ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~ 89 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKN-------FGEKVLYVSF-EEPPEELIENMKSFGWDLEEYEDSGKLKIIDAF 89 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHH-------HT--EEEEES-SS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhh-------cCCcEEEEEe-cCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecc
Confidence 34679999999999997544334444422 0344677663 455566666666552100 0011111110
Q ss_pred CChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCC----ChHHHHHHhhhcCCCceEEEEec
Q 003910 336 MSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG----FEPQIRSIVGQIRPDRQTLLFSA 411 (787)
Q Consensus 336 ~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~----f~~~i~~il~~~~~~~q~ll~SA 411 (787)
...... . -..+..+...+...... .+.+.||||-...+.... +...+..++..++....++++++
T Consensus 90 ~~~~~~--------~--~~~~~~l~~~i~~~i~~-~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~llt~ 158 (226)
T PF06745_consen 90 PERIGW--------S--PNDLEELLSKIREAIEE-LKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVTTLLTS 158 (226)
T ss_dssp GGGST---------T--SCCHHHHHHHHHHHHHH-HTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred cccccc--------c--ccCHHHHHHHHHHHHHh-cCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 000000 0 12344444444332111 233889999999873222 23345555555555556666666
Q ss_pred cC
Q 003910 412 TM 413 (787)
Q Consensus 412 T~ 413 (787)
..
T Consensus 159 ~~ 160 (226)
T PF06745_consen 159 EM 160 (226)
T ss_dssp EE
T ss_pred cc
Confidence 63
No 361
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.58 E-value=4.5 Score=47.99 Aligned_cols=41 Identities=15% Similarity=0.346 Sum_probs=23.3
Q ss_pred ccceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEecc
Q 003910 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSAT 412 (787)
Q Consensus 370 l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT 412 (787)
+....+|||||+|.|....+ ..+.+.+...++ .-++++.++
T Consensus 118 ~~~~kVvIIDEa~~L~~~a~-naLLk~LEepp~-~tv~Il~t~ 158 (585)
T PRK14950 118 LARYKVYIIDEVHMLSTAAF-NALLKTLEEPPP-HAIFILATT 158 (585)
T ss_pred cCCeEEEEEeChHhCCHHHH-HHHHHHHhcCCC-CeEEEEEeC
Confidence 35678999999998764322 233344444333 334445554
No 362
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=90.44 E-value=0.18 Score=64.42 Aligned_cols=93 Identities=24% Similarity=0.305 Sum_probs=75.6
Q ss_pred EEEEecccccHHHHHHHHHHcC-CceeeccCCCC-----------HHHHHHHHHHhhcCCccEEEEehhhhccCCCCCcc
Q 003910 473 VLVFASKKTTVDEIESQLAQKG-FKAAALHGDKD-----------QASRMEILQKFKSGVYHVLIATDVAARGLDIKSIK 540 (787)
Q Consensus 473 vLVF~~s~~~a~~l~~~L~~~g-~~v~~lhg~~~-----------~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~ 540 (787)
.+|||+....+..+...+.... +.+..+.|.+. +..+..++..|....+++|++|.++..|+|++.++
T Consensus 295 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~~ 374 (1606)
T KOG0701|consen 295 GIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKCN 374 (1606)
T ss_pred heeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhhh
Confidence 5788888888888887776642 23333444332 23467899999999999999999999999999999
Q ss_pred EEEEecCCCCHHHHHHHhhccCCCC
Q 003910 541 SVVNFDIARDMDMHVHRIGRTGRAG 565 (787)
Q Consensus 541 ~VI~~d~p~s~~~y~QriGR~gR~G 565 (787)
.|+.++.|.....|+|..||+-++.
T Consensus 375 ~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 375 LVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hheeccCcchHHHHHHhhcccccch
Confidence 9999999999999999999997765
No 363
>PHA00729 NTP-binding motif containing protein
Probab=90.40 E-value=2.2 Score=43.86 Aligned_cols=74 Identities=14% Similarity=0.189 Sum_probs=38.9
Q ss_pred cEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcC-CCh----HHHHHHhhhcCCCceEEEEeccCcHHHHHHHHH
Q 003910 350 EIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL-GFE----PQIRSIVGQIRPDRQTLLFSATMPRKVEKLARE 423 (787)
Q Consensus 350 dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~-~f~----~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~ 423 (787)
..++.+...|+..+........++.+|||||+=.-+.. .|. .....+...++...+++.+...-+..+...++.
T Consensus 60 ~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~ 138 (226)
T PHA00729 60 NSYFFELPDALEKIQDAIDNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLRE 138 (226)
T ss_pred cEEEEEHHHHHHHHHHHHhcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHh
Confidence 45555556666555432222335678999994321110 011 122234444444566777877777777666665
No 364
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.35 E-value=2.3 Score=47.95 Aligned_cols=24 Identities=25% Similarity=0.171 Sum_probs=17.1
Q ss_pred CEEEEccCCCchhHHHHHHHHHHHh
Q 003910 264 DIIGIAKTGSGKTAAFVLPMIVHIM 288 (787)
Q Consensus 264 dvii~a~TGsGKTla~llp~l~~l~ 288 (787)
.+|+++|.|+|||.++.+ +...+.
T Consensus 40 a~lf~Gp~G~GKtt~A~~-~a~~l~ 63 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARV-FAKAVN 63 (397)
T ss_pred eEEEECCCCCCHHHHHHH-HHHHhc
Confidence 488999999999986433 334443
No 365
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=90.29 E-value=2.6 Score=44.43 Aligned_cols=115 Identities=14% Similarity=0.110 Sum_probs=59.3
Q ss_pred CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHH
Q 003910 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF 342 (787)
Q Consensus 263 rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~ 342 (787)
.=+++.|.+|.|||.. ++-+..++... .+..++++..- .-..++...+-... .++...-+..+......+
T Consensus 20 ~L~vi~a~pg~GKT~~-~l~ia~~~a~~------~~~~vly~SlE-m~~~~l~~R~la~~--s~v~~~~i~~g~l~~~e~ 89 (259)
T PF03796_consen 20 ELTVIAARPGVGKTAF-ALQIALNAALN------GGYPVLYFSLE-MSEEELAARLLARL--SGVPYNKIRSGDLSDEEF 89 (259)
T ss_dssp -EEEEEESTTSSHHHH-HHHHHHHHHHT------TSSEEEEEESS-S-HHHHHHHHHHHH--HTSTHHHHHCCGCHHHHH
T ss_pred cEEEEEecccCCchHH-HHHHHHHHHHh------cCCeEEEEcCC-CCHHHHHHHHHHHh--hcchhhhhhccccCHHHH
Confidence 4578899999999974 55555555432 13557777552 22223332222222 133222222233223332
Q ss_pred HHHh------cCCcEEE-e----CHHHHHHHHHhccccccceeEEEEechhhhhcC
Q 003910 343 KELK------AGCEIVI-A----TPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL 387 (787)
Q Consensus 343 ~~l~------~~~dIIV-~----Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~ 387 (787)
..+. ....+.| . |+..|...+..-......+.+||||=.|.|...
T Consensus 90 ~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~ 145 (259)
T PF03796_consen 90 ERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSE 145 (259)
T ss_dssp HHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTS
T ss_pred HHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCC
Confidence 2221 1233443 3 555666655543333368899999999987653
No 366
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=90.12 E-value=5.4 Score=44.28 Aligned_cols=110 Identities=14% Similarity=0.169 Sum_probs=59.6
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHH
Q 003910 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ 341 (787)
Q Consensus 262 grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~ 341 (787)
.+.+.+.++.|.|||. ++-++...+... .+.+ +...+.+.+++..+.++. ++...-.
T Consensus 62 ~~GlYl~G~vG~GKT~--Lmd~f~~~lp~~-----~k~R----~HFh~Fm~~vh~~l~~~~-----------~~~~~l~- 118 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTM--LMDLFYDSLPIK-----RKRR----VHFHEFMLDVHSRLHQLR-----------GQDDPLP- 118 (362)
T ss_pred CceEEEECCCCCchhH--HHHHHHHhCCcc-----cccc----ccccHHHHHHHHHHHHHh-----------CCCccHH-
Confidence 3679999999999996 344444332210 1111 244577777777777764 1111111
Q ss_pred HHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHhhhc-CCCceEEEEeccCcHHH
Q 003910 342 FKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI-RPDRQTLLFSATMPRKV 417 (787)
Q Consensus 342 ~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~-~~~~q~ll~SAT~~~~v 417 (787)
.+.+.+ .....+|+|||.|- -|.+-.-.+..++..+ ....-+|++|-+.|.++
T Consensus 119 ----------------~va~~l------~~~~~lLcfDEF~V-~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 119 ----------------QVADEL------AKESRLLCFDEFQV-TDIADAMILKRLFEALFKRGVVLVATSNRPPEDL 172 (362)
T ss_pred ----------------HHHHHH------HhcCCEEEEeeeec-cchhHHHHHHHHHHHHHHCCCEEEecCCCChHHH
Confidence 111111 23556799999993 2222122344444443 34556777777777653
No 367
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=90.09 E-value=3.6 Score=44.46 Aligned_cols=38 Identities=18% Similarity=0.273 Sum_probs=24.4
Q ss_pred ceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEe
Q 003910 372 RVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (787)
Q Consensus 372 ~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~S 410 (787)
...+|||||+|.+.... ...+..++...++...+|+.+
T Consensus 102 ~~~vviiDe~~~l~~~~-~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTSDA-QQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCHHH-HHHHHHHHhcCCCCCeEEEEe
Confidence 46789999999875421 234556666656666655544
No 368
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=90.07 E-value=1.2 Score=48.12 Aligned_cols=58 Identities=29% Similarity=0.328 Sum_probs=37.7
Q ss_pred CcHHHHHHHHHHH-cCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHH
Q 003910 248 PTSIQCQALPIIL-SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELA 311 (787)
Q Consensus 248 ptp~Q~~ai~~il-~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa 311 (787)
+++.|.+.|..++ .+++++++++||||||.. +-.++..+...+ ..-+++++=.+.||.
T Consensus 117 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~~~-----~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 117 MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAKND-----PTDRVVIIEDTRELQ 175 (299)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhccC-----CCceEEEECCchhhc
Confidence 4455556665544 567999999999999974 455555553211 134577787777774
No 369
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=90.01 E-value=2.2 Score=45.75 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=15.5
Q ss_pred CCCEEEEccCCCchhHHH
Q 003910 262 GRDIIGIAKTGSGKTAAF 279 (787)
Q Consensus 262 grdvii~a~TGsGKTla~ 279 (787)
+.++++.+|+|+|||.++
T Consensus 58 ~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 458999999999999764
No 370
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=89.91 E-value=1.6 Score=49.10 Aligned_cols=45 Identities=24% Similarity=0.398 Sum_probs=26.8
Q ss_pred cceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEeccCcHHH
Q 003910 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKV 417 (787)
Q Consensus 371 ~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v 417 (787)
...+++||||+|+|.... ...+.++++.-++.. ++++.+|-+..+
T Consensus 116 ~~~kViiIDead~m~~~a-anaLLk~LEep~~~~-~fIL~a~~~~~l 160 (394)
T PRK07940 116 GRWRIVVIEDADRLTERA-ANALLKAVEEPPPRT-VWLLCAPSPEDV 160 (394)
T ss_pred CCcEEEEEechhhcCHHH-HHHHHHHhhcCCCCC-eEEEEECChHHC
Confidence 467899999999986432 234555555544444 455555544443
No 371
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.87 E-value=4.6 Score=47.22 Aligned_cols=39 Identities=13% Similarity=0.166 Sum_probs=24.5
Q ss_pred cceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEe
Q 003910 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (787)
Q Consensus 371 ~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~S 410 (787)
....++||||||+|-...+ ..+.+.+...+....+|+.+
T Consensus 118 g~~kViIIDEa~~ls~~a~-naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 118 GRYKVYLIDEVHMLSKQSF-NALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred CCcEEEEEechhhccHHHH-HHHHHHHhcCCCCceEEEEE
Confidence 4678999999999765322 34555556544455555544
No 372
>PF05729 NACHT: NACHT domain
Probab=89.84 E-value=2 Score=41.12 Aligned_cols=38 Identities=18% Similarity=0.329 Sum_probs=23.7
Q ss_pred EEEEechhhhhcCC-------ChHHHHHHhhh-cCCCceEEEEecc
Q 003910 375 YLVLDEADRMFDLG-------FEPQIRSIVGQ-IRPDRQTLLFSAT 412 (787)
Q Consensus 375 ~lViDEah~m~~~~-------f~~~i~~il~~-~~~~~q~ll~SAT 412 (787)
+||||-+|.+.... +...+..++.. +.+..++++.|.+
T Consensus 84 llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~ 129 (166)
T PF05729_consen 84 LLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRP 129 (166)
T ss_pred EEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcC
Confidence 49999999877632 22344455554 4556776666655
No 373
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=89.78 E-value=3.2 Score=50.59 Aligned_cols=44 Identities=11% Similarity=0.245 Sum_probs=25.7
Q ss_pred eEEEEechhhhhcCCC----hHHHHHHhhhcCCCceEEEEeccCcHHH
Q 003910 374 TYLVLDEADRMFDLGF----EPQIRSIVGQIRPDRQTLLFSATMPRKV 417 (787)
Q Consensus 374 ~~lViDEah~m~~~~f----~~~i~~il~~~~~~~q~ll~SAT~~~~v 417 (787)
.+|+|||+|.+...+- ...+..++..+-...++.++.||-+++.
T Consensus 280 ~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~ 327 (758)
T PRK11034 280 SILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEF 327 (758)
T ss_pred CEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHH
Confidence 4899999999875442 1223333433333445666677755554
No 374
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.67 E-value=0.75 Score=50.37 Aligned_cols=16 Identities=38% Similarity=0.526 Sum_probs=14.7
Q ss_pred CCEEEEccCCCchhHH
Q 003910 263 RDIIGIAKTGSGKTAA 278 (787)
Q Consensus 263 rdvii~a~TGsGKTla 278 (787)
||+++.+|+|+|||+.
T Consensus 385 RNilfyGPPGTGKTm~ 400 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMF 400 (630)
T ss_pred hheeeeCCCCCCchHH
Confidence 7999999999999975
No 375
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=89.67 E-value=1.2 Score=53.36 Aligned_cols=43 Identities=21% Similarity=0.305 Sum_probs=38.1
Q ss_pred ceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEeccCc
Q 003910 372 RVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMP 414 (787)
Q Consensus 372 ~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~ 414 (787)
..-++|||..|++.+......+..++++.+++.++++.|-+-|
T Consensus 129 ~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 129 GPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred CceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 3468999999999998888899999999999999999988855
No 376
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=89.57 E-value=5.4 Score=43.46 Aligned_cols=134 Identities=19% Similarity=0.283 Sum_probs=64.8
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEE-cCc-HHHHHHHHHHHHHHhhhcCceEEEEECCCChH
Q 003910 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC-APT-RELAHQIYLETKKFAKSHGIRVSAVYGGMSKL 339 (787)
Q Consensus 262 grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl-~Pt-reLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~ 339 (787)
++-+++++++|+|||... ..|...+.. .+..++++ +.+ |..+.+ .+..|+...++.++....+....
T Consensus 114 ~~vi~lvGpnGsGKTTt~--~kLA~~l~~------~g~~V~Li~~D~~r~~a~e---ql~~~a~~~~i~~~~~~~~~dpa 182 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTI--GKLAHKYKA------QGKKVLLAAGDTFRAAAIE---QLQVWGERVGVPVIAQKEGADPA 182 (318)
T ss_pred CeEEEEECCCCCcHHHHH--HHHHHHHHh------cCCeEEEEecCccchhhHH---HHHHHHHHcCceEEEeCCCCCHH
Confidence 456788999999999763 223333221 23344444 444 333322 23344444455443332211110
Q ss_pred HHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcC-CChHHHHHHhhhc------CCCceEEEEecc
Q 003910 340 DQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL-GFEPQIRSIVGQI------RPDRQTLLFSAT 412 (787)
Q Consensus 340 ~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~-~f~~~i~~il~~~------~~~~q~ll~SAT 412 (787)
....+.+... ....+++||||=+-++... .....+..+...+ .+..-++.++||
T Consensus 183 -----------------~~v~~~l~~~--~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~ 243 (318)
T PRK10416 183 -----------------SVAFDAIQAA--KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDAT 243 (318)
T ss_pred -----------------HHHHHHHHHH--HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECC
Confidence 0111111111 1356788999988875422 1223444443322 244567888999
Q ss_pred CcHHHHHHHHHHh
Q 003910 413 MPRKVEKLAREIL 425 (787)
Q Consensus 413 ~~~~v~~l~~~~l 425 (787)
...+....+..+.
T Consensus 244 ~g~~~~~~a~~f~ 256 (318)
T PRK10416 244 TGQNALSQAKAFH 256 (318)
T ss_pred CChHHHHHHHHHH
Confidence 7554434455554
No 377
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=89.46 E-value=7.4 Score=45.36 Aligned_cols=128 Identities=16% Similarity=0.208 Sum_probs=78.8
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhh-cCc-eEEEEECCCChH
Q 003910 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS-HGI-RVSAVYGGMSKL 339 (787)
Q Consensus 262 grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~-~~i-~v~~~~gg~~~~ 339 (787)
.+-.+..-|=--|||. |+.|++..++.. -.+-.+.+++.-+..++-+.+++..-+.. ++- .++..-+
T Consensus 202 QkaTVFLVPRRHGKTW-f~VpiIsllL~s-----~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~----- 270 (668)
T PHA03372 202 QKATVFLVPRRHGKTW-FIIPIISFLLKN-----IIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKD----- 270 (668)
T ss_pred ccceEEEecccCCcee-hHHHHHHHHHHh-----hcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecC-----
Confidence 3556777888899997 689999888763 34677999999988887766665433321 111 1111111
Q ss_pred HHHHHHhcCCcEEEeCHHH-----HHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHhhhc-CCCceEEEEeccC
Q 003910 340 DQFKELKAGCEIVIATPGR-----LIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI-RPDRQTLLFSATM 413 (787)
Q Consensus 340 ~~~~~l~~~~dIIV~Tp~~-----L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~-~~~~q~ll~SAT~ 413 (787)
.-|.+.-|+. +......+...-..+.+|+|||||-+. ...+..|+..+ ..++++|+.|.|-
T Consensus 271 ---------~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~----~~a~~tilgfm~q~~~KiIfISS~N 337 (668)
T PHA03372 271 ---------NVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIK----KDAFNTILGFLAQNTTKIIFISSTN 337 (668)
T ss_pred ---------cEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccC----HHHHHHhhhhhcccCceEEEEeCCC
Confidence 1233322211 111223344445678999999999654 33555666554 3578899999885
No 378
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.42 E-value=3.1 Score=47.89 Aligned_cols=16 Identities=31% Similarity=0.324 Sum_probs=13.6
Q ss_pred CEEEEccCCCchhHHH
Q 003910 264 DIIGIAKTGSGKTAAF 279 (787)
Q Consensus 264 dvii~a~TGsGKTla~ 279 (787)
.+|+++|+|+|||..+
T Consensus 38 ~~Lf~GPpGtGKTTlA 53 (472)
T PRK14962 38 AYIFAGPRGTGKTTVA 53 (472)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3799999999999763
No 379
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=89.42 E-value=4.2 Score=50.57 Aligned_cols=17 Identities=35% Similarity=0.472 Sum_probs=14.9
Q ss_pred CCEEEEccCCCchhHHH
Q 003910 263 RDIIGIAKTGSGKTAAF 279 (787)
Q Consensus 263 rdvii~a~TGsGKTla~ 279 (787)
.++|+.+|+|+|||...
T Consensus 195 ~n~lL~G~pGvGKT~l~ 211 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIV 211 (852)
T ss_pred CceEEEcCCCCCHHHHH
Confidence 58999999999999763
No 380
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=89.29 E-value=5.2 Score=48.89 Aligned_cols=16 Identities=31% Similarity=0.474 Sum_probs=14.6
Q ss_pred CCEEEEccCCCchhHH
Q 003910 263 RDIIGIAKTGSGKTAA 278 (787)
Q Consensus 263 rdvii~a~TGsGKTla 278 (787)
.++|+.+++|+|||..
T Consensus 204 ~n~lL~G~pG~GKT~l 219 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAI 219 (731)
T ss_pred CceEEECCCCCCHHHH
Confidence 5899999999999975
No 381
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=89.21 E-value=5.4 Score=39.38 Aligned_cols=53 Identities=19% Similarity=0.323 Sum_probs=41.0
Q ss_pred ccceeEEEEechhhhhcCCCh--HHHHHHhhhcCCCceEEEEeccCcHHHHHHHH
Q 003910 370 MSRVTYLVLDEADRMFDLGFE--PQIRSIVGQIRPDRQTLLFSATMPRKVEKLAR 422 (787)
Q Consensus 370 l~~i~~lViDEah~m~~~~f~--~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~ 422 (787)
-..+++||+||+-..++.++. ..+..++...++...+|+..-.+|+.+.+++.
T Consensus 113 ~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~AD 167 (178)
T PRK07414 113 EGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIAD 167 (178)
T ss_pred CCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCC
Confidence 357899999999988888754 56777788777777788877778888766553
No 382
>PRK11823 DNA repair protein RadA; Provisional
Probab=89.20 E-value=1.3 Score=50.67 Aligned_cols=51 Identities=22% Similarity=0.303 Sum_probs=32.7
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003910 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (787)
Q Consensus 262 grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~ 321 (787)
|.-+++.+++|+|||.. ++-++..+.. .+.++|++. +.+...|+...+.++
T Consensus 80 Gs~~lI~G~pG~GKTtL-~lq~a~~~a~-------~g~~vlYvs-~Ees~~qi~~ra~rl 130 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTL-LLQVAARLAA-------AGGKVLYVS-GEESASQIKLRAERL 130 (446)
T ss_pred CEEEEEECCCCCCHHHH-HHHHHHHHHh-------cCCeEEEEE-ccccHHHHHHHHHHc
Confidence 45688999999999974 4444444322 245577776 445666776665554
No 383
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.10 E-value=3 Score=48.75 Aligned_cols=40 Identities=13% Similarity=0.189 Sum_probs=25.0
Q ss_pred ccceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEe
Q 003910 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (787)
Q Consensus 370 l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~S 410 (787)
..+.+++||||+|+|....+ ..+.+.+...+....+|+.+
T Consensus 117 ~~~~kVvIIDEad~ls~~a~-naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHHHH-HHHHHHHhCCCCCEEEEEEe
Confidence 35678999999998765332 24455555544555555544
No 384
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=89.09 E-value=1.2 Score=52.00 Aligned_cols=68 Identities=26% Similarity=0.516 Sum_probs=56.0
Q ss_pred EEEEecccccHHHHHHHHHHc-----CCceeeccCCCCHHHHHHHHHHhhcCCccEEEEe-----hhhhcc-CCCCCccE
Q 003910 473 VLVFASKKTTVDEIESQLAQK-----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIAT-----DVAARG-LDIKSIKS 541 (787)
Q Consensus 473 vLVF~~s~~~a~~l~~~L~~~-----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT-----~v~~rG-lDip~v~~ 541 (787)
+||+++|++-|.++++.+... ++.+..++|+++...+...++ .| .+|||+| +.+.++ +++..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~---~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALK---RG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHh---cC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 999999999999998887653 567899999999877665554 46 9999999 466677 99999999
Q ss_pred EEE
Q 003910 542 VVN 544 (787)
Q Consensus 542 VI~ 544 (787)
+|.
T Consensus 178 lVl 180 (513)
T COG0513 178 LVL 180 (513)
T ss_pred EEe
Confidence 885
No 385
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=89.07 E-value=3.8 Score=44.93 Aligned_cols=146 Identities=17% Similarity=0.135 Sum_probs=63.7
Q ss_pred EEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHH-H---HHHHHHhhhcCceEEEE--ECCCChH
Q 003910 266 IGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQI-Y---LETKKFAKSHGIRVSAV--YGGMSKL 339 (787)
Q Consensus 266 ii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi-~---~~~~~~~~~~~i~v~~~--~gg~~~~ 339 (787)
|+.++.|+|||....+.++.+++..+. ...++++ ||..-+... . ..+..+... .+.+... ......
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~-----~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~- 72 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPP-----GRRVIIA-STYRQARDIFGRFWKGIIELLPS-WFEIKFNEWNDRKII- 72 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS-------EEEEE-ESSHHHHHHHHHHHHHHHHTS-T-TTS--EEEE-SSEEE-
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCC-----CcEEEEe-cCHHHHHHHHHHhHHHHHHHHHH-hcCcccccCCCCcEE-
Confidence 577899999999888877777765431 2445555 555544442 2 233333332 1222111 000000
Q ss_pred HHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEecc--CcHHH
Q 003910 340 DQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSAT--MPRKV 417 (787)
Q Consensus 340 ~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT--~~~~v 417 (787)
+..+..|.+.+...-.. ...+.-..+++|||||+-.+.+..+...+...+.... ....+++|.| ....+
T Consensus 73 -----~~nG~~i~~~~~~~~~~---~~~~~G~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~p~~~~~~~ 143 (384)
T PF03237_consen 73 -----LPNGSRIQFRGADSPDS---GDNIRGFEYDLIIIDEAAKVPDDAFSELIRRLRATWG-GSIRMYISTPPNPGGWF 143 (384)
T ss_dssp -----ETTS-EEEEES-----S---HHHHHTS--SEEEEESGGGSTTHHHHHHHHHHHHCST-T--EEEEEE---SSSHH
T ss_pred -----ecCceEEEEeccccccc---cccccccccceeeeeecccCchHHHHHHHHhhhhccc-CcceEEeecCCCCCCce
Confidence 13456666666332100 0011125678999999887654433333333332222 2222245554 33445
Q ss_pred HHHHHHHhCCC
Q 003910 418 EKLAREILSDP 428 (787)
Q Consensus 418 ~~l~~~~l~~p 428 (787)
..+......+.
T Consensus 144 ~~~~~~~~~~~ 154 (384)
T PF03237_consen 144 YEIFQRNLDDD 154 (384)
T ss_dssp HHHHHHHHCTS
T ss_pred eeeeehhhcCC
Confidence 55666665554
No 386
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=89.05 E-value=1.1 Score=49.01 Aligned_cols=44 Identities=23% Similarity=0.223 Sum_probs=29.5
Q ss_pred HHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHH
Q 003910 259 ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELA 311 (787)
Q Consensus 259 il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa 311 (787)
+..+++++++++||||||.. +-.++.++- ..-++++|=-+.||.
T Consensus 157 v~~~~nili~G~tgSGKTTl-l~aL~~~ip--------~~~ri~tiEd~~El~ 200 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTF-TNAALREIP--------AIERLITVEDAREIV 200 (332)
T ss_pred HHcCCcEEEECCCCCCHHHH-HHHHHhhCC--------CCCeEEEecCCCccc
Confidence 44678999999999999974 555555541 223466665555654
No 387
>PHA00012 I assembly protein
Probab=89.02 E-value=6.1 Score=42.70 Aligned_cols=57 Identities=25% Similarity=0.293 Sum_probs=36.0
Q ss_pred cceeEEEEechhhhhcC-CCh----HHHHHHhhhcCCCceEEEEeccCcHHHHHHHHHHhCC
Q 003910 371 SRVTYLVLDEADRMFDL-GFE----PQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSD 427 (787)
Q Consensus 371 ~~i~~lViDEah~m~~~-~f~----~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~ 427 (787)
..-.++||||||..++. .+. ..+...+...+...--++|-.--+..+...++..+..
T Consensus 80 p~gsLlVlDEaq~~fp~R~~~sk~p~~vie~l~~hRh~G~DvilITQ~ps~VDs~IR~ll~e 141 (361)
T PHA00012 80 SKNGLLVLDECGTWFNSRSWNDKERQPVIDWFLHARKLGWDIIFIIQDISIMDKQAREALAE 141 (361)
T ss_pred CCCcEEEEECcccccCCCCcCcCCcHHHHHHHHHhccCCceEEEEcCCHHHHhHHHHHhhhh
Confidence 45678999999998752 222 3356666666655555555555556676667655543
No 388
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=89.01 E-value=0.59 Score=51.37 Aligned_cols=45 Identities=24% Similarity=0.207 Sum_probs=30.5
Q ss_pred HHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHH
Q 003910 258 IILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELA 311 (787)
Q Consensus 258 ~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa 311 (787)
++..+++++++++||||||.. +-.++.++- ...+++.+=.+.||.
T Consensus 158 ~v~~~~nilI~G~tGSGKTTl-l~aLl~~i~--------~~~rivtiEd~~El~ 202 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTTM-SKTLISAIP--------PQERLITIEDTLELV 202 (344)
T ss_pred HHHcCCeEEEECCCCccHHHH-HHHHHcccC--------CCCCEEEECCCcccc
Confidence 345678999999999999974 444444431 123467777777774
No 389
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=88.98 E-value=1.9 Score=49.80 Aligned_cols=54 Identities=17% Similarity=0.268 Sum_probs=33.9
Q ss_pred CccCCccccCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHH
Q 003910 222 RPVKTFEDCGFSTQLMHAISKQ---GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 222 ~pi~sf~~~~l~~~l~~~l~~~---g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla 278 (787)
-|-.+|++.|--..+...|.-. .+..|--++.-.+.. -..+|+|+|+|+|||+.
T Consensus 505 VPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~---PsGvLL~GPPGCGKTLl 561 (802)
T KOG0733|consen 505 VPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDA---PSGVLLCGPPGCGKTLL 561 (802)
T ss_pred cCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCC---CCceEEeCCCCccHHHH
Confidence 3557899998777766655432 233333333322211 35799999999999974
No 390
>PRK04841 transcriptional regulator MalT; Provisional
Probab=88.96 E-value=3.1 Score=52.08 Aligned_cols=44 Identities=16% Similarity=0.309 Sum_probs=34.6
Q ss_pred cceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEeccCc
Q 003910 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMP 414 (787)
Q Consensus 371 ~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~ 414 (787)
..--+||||++|.+-+......+..++...++..++|+.|-+.|
T Consensus 120 ~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 120 HQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred CCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 44568999999998655555678888888888899988887754
No 391
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.75 E-value=2.7 Score=48.81 Aligned_cols=23 Identities=17% Similarity=0.154 Sum_probs=16.9
Q ss_pred EEEEccCCCchhHHHHHHHHHHHh
Q 003910 265 IIGIAKTGSGKTAAFVLPMIVHIM 288 (787)
Q Consensus 265 vii~a~TGsGKTla~llp~l~~l~ 288 (787)
+|+++|.|+|||.++ ..+..++.
T Consensus 39 ~Lf~GppGtGKTTlA-~~lA~~l~ 61 (504)
T PRK14963 39 YLFSGPRGVGKTTTA-RLIAMAVN 61 (504)
T ss_pred EEEECCCCCCHHHHH-HHHHHHHh
Confidence 599999999999863 34445543
No 392
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=88.72 E-value=2.8 Score=45.78 Aligned_cols=40 Identities=15% Similarity=0.234 Sum_probs=25.5
Q ss_pred cceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEec
Q 003910 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSA 411 (787)
Q Consensus 371 ~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SA 411 (787)
...+++|||+||+|-... ...+.++++.-++...+|+.|.
T Consensus 106 g~~KV~iI~~a~~m~~~A-aNaLLKtLEEPp~~~~fiL~t~ 145 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAA-ANALLKTLEEPRPNTYFLLQAD 145 (325)
T ss_pred CCceEEEEechhhhCHHH-HHHHHHHhcCCCCCeEEEEEEC
Confidence 467899999999987532 3456666666444444444433
No 393
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.60 E-value=2.5 Score=50.32 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=17.8
Q ss_pred CCEEEEccCCCchhHHHHHHHHHHHh
Q 003910 263 RDIIGIAKTGSGKTAAFVLPMIVHIM 288 (787)
Q Consensus 263 rdvii~a~TGsGKTla~llp~l~~l~ 288 (787)
..+|++++.|+|||..+ ..+...++
T Consensus 39 ~a~Lf~Gp~G~GKttlA-~~lAk~L~ 63 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSA-RILAKSLN 63 (620)
T ss_pred ceEEEECCCCCChHHHH-HHHHHHhc
Confidence 45799999999999863 33444443
No 394
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=88.55 E-value=0.74 Score=55.16 Aligned_cols=92 Identities=22% Similarity=0.346 Sum_probs=75.3
Q ss_pred CCcchHHHHHHhcCCcCCCC-CEEEEecccccHHHHHHHHHHc-CCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehh
Q 003910 452 SDAEKLPWLLEKLPGMIDDG-DVLVFASKKTTVDEIESQLAQK-GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDV 529 (787)
Q Consensus 452 ~~~~k~~~L~~~L~~~~~~~-kvLVF~~s~~~a~~l~~~L~~~-g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v 529 (787)
..+.|...+++++...+..| .+||.++.+.....+...|+.. +.++.++|++++..+|.....+..+|+.+|+|.|..
T Consensus 226 TGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRS 305 (730)
T COG1198 226 TGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRS 305 (730)
T ss_pred CCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEech
Confidence 45678888888887776666 7999999999998888888654 889999999999999999999999999999999954
Q ss_pred hhccCCCCCccEEEE
Q 003910 530 AARGLDIKSIKSVVN 544 (787)
Q Consensus 530 ~~rGlDip~v~~VI~ 544 (787)
+- =+-++++..||.
T Consensus 306 Al-F~Pf~~LGLIIv 319 (730)
T COG1198 306 AL-FLPFKNLGLIIV 319 (730)
T ss_pred hh-cCchhhccEEEE
Confidence 32 134556666664
No 395
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.54 E-value=3.1 Score=49.45 Aligned_cols=40 Identities=10% Similarity=0.114 Sum_probs=23.1
Q ss_pred ccceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEe
Q 003910 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (787)
Q Consensus 370 l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~S 410 (787)
+...++|||||+|.|-... ...+.+.+...++..-+|+++
T Consensus 125 ~~~~KVvIIdEad~Lt~~a-~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 125 KGRYRVYIIDEVHMLSTAA-FNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred cCCCEEEEEeChhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 4567899999999976432 223444444444443344433
No 396
>PRK05973 replicative DNA helicase; Provisional
Probab=88.50 E-value=3.4 Score=42.93 Aligned_cols=66 Identities=20% Similarity=0.228 Sum_probs=39.3
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003910 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (787)
Q Consensus 246 ~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~ 321 (787)
..+||... ..--+..|.-++|.|++|+|||+. .+-++..... .+..++++.- -+-..|+.+.+..+
T Consensus 49 ~~~~p~~~-l~GGl~~Gsl~LIaG~PG~GKT~l-alqfa~~~a~-------~Ge~vlyfSl-Ees~~~i~~R~~s~ 114 (237)
T PRK05973 49 AATTPAEE-LFSQLKPGDLVLLGARPGHGKTLL-GLELAVEAMK-------SGRTGVFFTL-EYTEQDVRDRLRAL 114 (237)
T ss_pred cCCCCHHH-hcCCCCCCCEEEEEeCCCCCHHHH-HHHHHHHHHh-------cCCeEEEEEE-eCCHHHHHHHHHHc
Confidence 34566333 333445667789999999999975 4433333322 2445666643 34456776666655
No 397
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=88.50 E-value=3.7 Score=45.67 Aligned_cols=135 Identities=16% Similarity=0.163 Sum_probs=61.9
Q ss_pred CEEEEccCCCchhHHHHHHHHHHHhcCcccccC---CCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEE-CCCChH
Q 003910 264 DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKE---EGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVY-GGMSKL 339 (787)
Q Consensus 264 dvii~a~TGsGKTla~llp~l~~l~~~~~~~~~---~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~-gg~~~~ 339 (787)
-.|+.+|.|.||+.. ...+...++........ ..+..+.+|+.-..|.++ .... +.++.++.-. .....
T Consensus 43 A~Lf~Gp~G~GK~~l-A~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i----~~~~-HPDl~~i~~~~~~~~~- 115 (365)
T PRK07471 43 AWLIGGPQGIGKATL-AYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRI----AAGA-HGGLLTLERSWNEKGK- 115 (365)
T ss_pred eEEEECCCCCCHHHH-HHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHH----HccC-CCCeEEEecccccccc-
Confidence 489999999999975 45556666654321110 012234445543333322 1111 1133322110 01000
Q ss_pred HHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEeccC
Q 003910 340 DQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATM 413 (787)
Q Consensus 340 ~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~ 413 (787)
. ....|.|-..-.+...+... .......+|||||+|.|-.. -...+.+.++..+....+|++|...
T Consensus 116 ----~--~~~~I~VdqiR~l~~~~~~~-~~~~~~kVviIDead~m~~~-aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 116 ----R--LRTVITVDEVRELISFFGLT-AAEGGWRVVIVDTADEMNAN-AANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred ----c--ccccccHHHHHHHHHHhCcC-cccCCCEEEEEechHhcCHH-HHHHHHHHHhcCCCCeEEEEEECCc
Confidence 0 01223332222233332222 12356789999999987532 2334555555544455555554443
No 398
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=88.31 E-value=3 Score=45.84 Aligned_cols=40 Identities=10% Similarity=0.023 Sum_probs=28.0
Q ss_pred cHHHHHHHHHHHcC-----CCEEEEccCCCchhHHHHHHHHHHHhc
Q 003910 249 TSIQCQALPIILSG-----RDIIGIAKTGSGKTAAFVLPMIVHIMD 289 (787)
Q Consensus 249 tp~Q~~ai~~il~g-----rdvii~a~TGsGKTla~llp~l~~l~~ 289 (787)
+|+|...+..+.+. +-+|+.++.|.||+..+ ..+...++.
T Consensus 3 yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA-~~~A~~LlC 47 (342)
T PRK06964 3 YPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFA-QHLAQGLLC 47 (342)
T ss_pred CcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHH-HHHHHHHcC
Confidence 57777777776643 35789999999999753 444455554
No 399
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=88.23 E-value=9.5 Score=41.29 Aligned_cols=130 Identities=19% Similarity=0.288 Sum_probs=73.2
Q ss_pred CEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcC-c-HHHHHHHHHHHHHHhhhcCceEEEE-ECCCChHH
Q 003910 264 DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAP-T-RELAHQIYLETKKFAKSHGIRVSAV-YGGMSKLD 340 (787)
Q Consensus 264 dvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~P-t-reLa~Qi~~~~~~~~~~~~i~v~~~-~gg~~~~~ 340 (787)
-+++++-.|+|||.+ +.=|.+.+. ..+.++|+.+- | |+-| .++++-|+...++.++.- +|+.+-.-
T Consensus 141 Vil~vGVNG~GKTTT--IaKLA~~l~------~~g~~VllaA~DTFRAaA---iEQL~~w~er~gv~vI~~~~G~DpAaV 209 (340)
T COG0552 141 VILFVGVNGVGKTTT--IAKLAKYLK------QQGKSVLLAAGDTFRAAA---IEQLEVWGERLGVPVISGKEGADPAAV 209 (340)
T ss_pred EEEEEecCCCchHhH--HHHHHHHHH------HCCCeEEEEecchHHHHH---HHHHHHHHHHhCCeEEccCCCCCcHHH
Confidence 367799999999987 333444433 23566666543 3 3333 456777777777776652 23222211
Q ss_pred HHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcC-CChHHHHHHhhhcCCCc------eEEEEeccC
Q 003910 341 QFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL-GFEPQIRSIVGQIRPDR------QTLLFSATM 413 (787)
Q Consensus 341 ~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~-~f~~~i~~il~~~~~~~------q~ll~SAT~ 413 (787)
..+.++.. .-..+++|++|=|=||-+. +.-..+.+|.+-+.+.. -++.+=||.
T Consensus 210 ------------------afDAi~~A--kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAtt 269 (340)
T COG0552 210 ------------------AFDAIQAA--KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATT 269 (340)
T ss_pred ------------------HHHHHHHH--HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEccc
Confidence 11222211 2346778888888887653 23455666665554432 344447887
Q ss_pred cHHHHHHHHHH
Q 003910 414 PRKVEKLAREI 424 (787)
Q Consensus 414 ~~~v~~l~~~~ 424 (787)
-.+.-.-++.|
T Consensus 270 Gqnal~QAk~F 280 (340)
T COG0552 270 GQNALSQAKIF 280 (340)
T ss_pred ChhHHHHHHHH
Confidence 66655555555
No 400
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=88.19 E-value=0.56 Score=46.55 Aligned_cols=43 Identities=16% Similarity=0.335 Sum_probs=30.5
Q ss_pred ccceeEEEEechhhhhcCCChHHHHHHhhhcCCC-ceEEEEecc
Q 003910 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPD-RQTLLFSAT 412 (787)
Q Consensus 370 l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~-~q~ll~SAT 412 (787)
+....++++||...-++......+..++..+... .++|+.|.-
T Consensus 114 ~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~ 157 (178)
T cd03239 114 IKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLK 157 (178)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 3567899999999888876666666666655433 666666654
No 401
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=88.17 E-value=6.9 Score=42.96 Aligned_cols=142 Identities=18% Similarity=0.152 Sum_probs=72.3
Q ss_pred CcHHHHHHHHHHHcCCC------EEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003910 248 PTSIQCQALPIILSGRD------IIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (787)
Q Consensus 248 ptp~Q~~ai~~il~grd------vii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~ 321 (787)
-+..|...+..++..++ +++.+.+|+|||.. +..++.+. +-+ .+.+.+- + +.-+.-.+.++
T Consensus 10 ~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~-~r~~l~~~---------n~~-~vw~n~~-e-cft~~~lle~I 76 (438)
T KOG2543|consen 10 CRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYL-VRQLLRKL---------NLE-NVWLNCV-E-CFTYAILLEKI 76 (438)
T ss_pred chHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHH-HHHHHhhc---------CCc-ceeeehH-H-hccHHHHHHHH
Confidence 45788888888887654 48899999999975 33333332 112 3444442 1 11233333333
Q ss_pred hhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHh--ccccccceeEEEEechhhhhcCCC--hHHHHHHh
Q 003910 322 AKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM--KALTMSRVTYLVLDEADRMFDLGF--EPQIRSIV 397 (787)
Q Consensus 322 ~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~--~~~~l~~i~~lViDEah~m~~~~f--~~~i~~il 397 (787)
+...+ .+-..|........ +-..++..+.+ ...+....-+||+|-||.+-|++- .+.+..+-
T Consensus 77 L~~~~---~~d~dg~~~~~~~e-----------n~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~ 142 (438)
T KOG2543|consen 77 LNKSQ---LADKDGDKVEGDAE-----------NFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLY 142 (438)
T ss_pred HHHhc---cCCCchhhhhhHHH-----------HHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHH
Confidence 32211 00000100000000 01112222222 112224567899999999988762 23444444
Q ss_pred hhcCCCceEEEEeccCcHH
Q 003910 398 GQIRPDRQTLLFSATMPRK 416 (787)
Q Consensus 398 ~~~~~~~q~ll~SAT~~~~ 416 (787)
..++.+.-.+++|+++++.
T Consensus 143 el~~~~~i~iils~~~~e~ 161 (438)
T KOG2543|consen 143 ELLNEPTIVIILSAPSCEK 161 (438)
T ss_pred HHhCCCceEEEEeccccHH
Confidence 5555556678899997754
No 402
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=88.13 E-value=0.68 Score=53.79 Aligned_cols=43 Identities=21% Similarity=0.272 Sum_probs=35.4
Q ss_pred CCCcHHHHHHHHHHH----cCCCEEEEccCCCchhHHHHHHHHHHHh
Q 003910 246 EKPTSIQCQALPIIL----SGRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (787)
Q Consensus 246 ~~ptp~Q~~ai~~il----~grdvii~a~TGsGKTla~llp~l~~l~ 288 (787)
-+|+.||.+.+..++ .|+-.|+..|||+|||+..+-.+|.+|-
T Consensus 14 y~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~ 60 (821)
T KOG1133|consen 14 YTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLR 60 (821)
T ss_pred CCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHH
Confidence 468999999887766 6888999999999999987766666654
No 403
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=88.11 E-value=5.1 Score=45.47 Aligned_cols=115 Identities=18% Similarity=0.160 Sum_probs=55.7
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHH
Q 003910 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~ 340 (787)
.|.=+++.|++|+|||.. ++-+..++.. ..+..++++. .-.-+.|+...+-.. ..++....+..|.-...
T Consensus 193 ~g~liviag~pg~GKT~~-al~ia~~~a~------~~g~~v~~fS-lEm~~~~l~~Rl~~~--~~~v~~~~~~~~~l~~~ 262 (421)
T TIGR03600 193 KGDLIVIGARPSMGKTTL-ALNIAENVAL------REGKPVLFFS-LEMSAEQLGERLLAS--KSGINTGNIRTGRFNDS 262 (421)
T ss_pred CCceEEEEeCCCCCHHHH-HHHHHHHHHH------hCCCcEEEEE-CCCCHHHHHHHHHHH--HcCCCHHHHhcCCCCHH
Confidence 445688899999999974 5555544421 1233466664 223334443332221 12333222222222222
Q ss_pred HHHHH------hcCCcEEEe-----CHHHHHHHHHhccccccceeEEEEechhhhh
Q 003910 341 QFKEL------KAGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (787)
Q Consensus 341 ~~~~l------~~~~dIIV~-----Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~ 385 (787)
.+..+ ..+..+.|. |...+...+.+-......+++||||=.+.|.
T Consensus 263 ~~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~ 318 (421)
T TIGR03600 263 DFNRLLNAVDRLSEKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMA 318 (421)
T ss_pred HHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccC
Confidence 22221 123455553 4444444433221112258899999888765
No 404
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=88.11 E-value=4.9 Score=43.94 Aligned_cols=39 Identities=21% Similarity=0.079 Sum_probs=27.3
Q ss_pred cHHHHHHHHHHHcC--C---CEEEEccCCCchhHHHHHHHHHHHh
Q 003910 249 TSIQCQALPIILSG--R---DIIGIAKTGSGKTAAFVLPMIVHIM 288 (787)
Q Consensus 249 tp~Q~~ai~~il~g--r---dvii~a~TGsGKTla~llp~l~~l~ 288 (787)
+|+|...+..+... + -+|+.+|.|.|||..+ ..+...++
T Consensus 3 yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la-~~~a~~ll 46 (325)
T PRK08699 3 YPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFA-RFAAQALL 46 (325)
T ss_pred CCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHH-HHHHHHHc
Confidence 57888888777633 2 4889999999999753 33344444
No 405
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=88.07 E-value=11 Score=38.95 Aligned_cols=51 Identities=10% Similarity=0.059 Sum_probs=30.1
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003910 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (787)
Q Consensus 262 grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~ 321 (787)
|.-+++.+++|+|||......+...+ . .+.+++++.- .+-..++.+.+..+
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~-~-------~g~~~~y~~~-e~~~~~~~~~~~~~ 75 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGAL-K-------QGKKVYVITT-ENTSKSYLKQMESV 75 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHH-h-------CCCEEEEEEc-CCCHHHHHHHHHHC
Confidence 45688899999999975333323333 1 2455666544 34445565555554
No 406
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=88.03 E-value=1.9 Score=47.97 Aligned_cols=51 Identities=22% Similarity=0.296 Sum_probs=31.4
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003910 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (787)
Q Consensus 262 grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~ 321 (787)
|.-+++.+++|+|||.. ++-++..+.. .+.++|++.-. +...|+...+.++
T Consensus 82 GslvLI~G~pG~GKStL-llq~a~~~a~-------~g~~VlYvs~E-Es~~qi~~Ra~rl 132 (372)
T cd01121 82 GSVILIGGDPGIGKSTL-LLQVAARLAK-------RGGKVLYVSGE-ESPEQIKLRADRL 132 (372)
T ss_pred CeEEEEEeCCCCCHHHH-HHHHHHHHHh-------cCCeEEEEECC-cCHHHHHHHHHHc
Confidence 45688999999999974 4444444322 23457777543 4456665555544
No 407
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=87.99 E-value=1.2 Score=45.43 Aligned_cols=41 Identities=22% Similarity=0.223 Sum_probs=24.5
Q ss_pred cceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEecc
Q 003910 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSAT 412 (787)
Q Consensus 371 ~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT 412 (787)
-+.++||+||||.|-+- -...++..+.......++.+..-+
T Consensus 112 grhKIiILDEADSMT~g-AQQAlRRtMEiyS~ttRFalaCN~ 152 (333)
T KOG0991|consen 112 GRHKIIILDEADSMTAG-AQQALRRTMEIYSNTTRFALACNQ 152 (333)
T ss_pred CceeEEEeeccchhhhH-HHHHHHHHHHHHcccchhhhhhcc
Confidence 56789999999987642 233455555544444444444333
No 408
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=87.93 E-value=0.88 Score=45.72 Aligned_cols=53 Identities=23% Similarity=0.415 Sum_probs=29.3
Q ss_pred ceeEEEEechhhhhcCCCh-----HHHHHHhhhcCCCceEEEEeccCcHHHHHHHHHH
Q 003910 372 RVTYLVLDEADRMFDLGFE-----PQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREI 424 (787)
Q Consensus 372 ~i~~lViDEah~m~~~~f~-----~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~ 424 (787)
.-.+|||||||.++..... +.+...+...+....-|+|..--+..+...++.+
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~~~~id~~ir~l 136 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQSPSQIDKFIRDL 136 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES-GGGB-HHHHCC
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCCHHHHhHHHHHH
Confidence 4568999999988754322 3344667666666555666655555555555543
No 409
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=87.89 E-value=1 Score=54.76 Aligned_cols=62 Identities=19% Similarity=0.318 Sum_probs=52.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHHcC-----Cceee-ccCCCCHHHHHHHHHHhhcCCccEEEEehhh
Q 003910 469 DDGDVLVFASKKTTVDEIESQLAQKG-----FKAAA-LHGDKDQASRMEILQKFKSGVYHVLIATDVA 530 (787)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~g-----~~v~~-lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~ 530 (787)
...+++|.+||..-+.++++.|.+.. +.+.. +|+.|+..+++.++++|.+|.++|||+|...
T Consensus 124 kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 124 KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 34689999999998888888887642 44333 8999999999999999999999999999653
No 410
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=87.89 E-value=3.1 Score=43.26 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=17.4
Q ss_pred HHHcCC-CEEEEccCCCchhHHHH
Q 003910 258 IILSGR-DIIGIAKTGSGKTAAFV 280 (787)
Q Consensus 258 ~il~gr-dvii~a~TGsGKTla~l 280 (787)
.+..++ -+.++++.|||||...-
T Consensus 46 ~i~d~qg~~~vtGevGsGKTv~~R 69 (269)
T COG3267 46 AIADGQGILAVTGEVGSGKTVLRR 69 (269)
T ss_pred HHhcCCceEEEEecCCCchhHHHH
Confidence 344555 68889999999998744
No 411
>PRK10865 protein disaggregation chaperone; Provisional
Probab=87.78 E-value=5.9 Score=49.21 Aligned_cols=16 Identities=38% Similarity=0.499 Sum_probs=14.5
Q ss_pred CCEEEEccCCCchhHH
Q 003910 263 RDIIGIAKTGSGKTAA 278 (787)
Q Consensus 263 rdvii~a~TGsGKTla 278 (787)
.++|+.+|+|+|||..
T Consensus 200 ~n~lL~G~pGvGKT~l 215 (857)
T PRK10865 200 NNPVLIGEPGVGKTAI 215 (857)
T ss_pred CceEEECCCCCCHHHH
Confidence 4899999999999975
No 412
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=87.77 E-value=0.54 Score=54.16 Aligned_cols=57 Identities=32% Similarity=0.458 Sum_probs=41.2
Q ss_pred CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEE
Q 003910 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVY 333 (787)
Q Consensus 263 rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~ 333 (787)
.+++++|+||||||..+++|.+... .+ -+||+=|--+|.......+++. +.+|.++-
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~---------~~-s~iV~D~KgEl~~~t~~~r~~~----G~~V~vld 101 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNY---------PG-SMIVTDPKGELYEKTAGYRKKR----GYKVYVLD 101 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhc---------cC-CEEEEECCCcHHHHHHHHHHHC----CCEEEEee
Confidence 5799999999999999999987432 12 4788889999887665544444 44555543
No 413
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=87.70 E-value=0.39 Score=53.84 Aligned_cols=56 Identities=23% Similarity=0.265 Sum_probs=39.6
Q ss_pred CEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEE
Q 003910 264 DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVY 333 (787)
Q Consensus 264 dvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~ 333 (787)
+++++|+||+|||..+++|-+... ...+||+=|.-++........++. |.+|.++-
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~----------~~s~vv~D~Kge~~~~t~~~r~~~----G~~V~v~n 56 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW----------PGSVVVLDPKGENFELTSEHRRAL----GRKVFVFD 56 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC----------CCCEEEEccchhHHHHHHHHHHHc----CCeEEEEc
Confidence 579999999999999888876532 234788889988987655444433 55554443
No 414
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=87.45 E-value=1.4 Score=46.15 Aligned_cols=20 Identities=30% Similarity=0.302 Sum_probs=17.3
Q ss_pred HHcCCCEEEEccCCCchhHH
Q 003910 259 ILSGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 259 il~grdvii~a~TGsGKTla 278 (787)
+-.|+.+++.++.|+|||..
T Consensus 13 i~~Gqr~~I~G~~G~GKTTL 32 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTL 32 (249)
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 45789999999999999963
No 415
>PRK06904 replicative DNA helicase; Validated
Probab=87.44 E-value=7.7 Score=44.71 Aligned_cols=117 Identities=15% Similarity=0.116 Sum_probs=58.2
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECC-CChH
Q 003910 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGG-MSKL 339 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg-~~~~ 339 (787)
.|.=+|+.|.+|.|||. |++-+..++... .+..++|+.. ..-..|+...+-... .++....+..| .-..
T Consensus 220 ~G~LiiIaarPg~GKTa-falnia~~~a~~------~g~~Vl~fSl-EMs~~ql~~Rlla~~--s~v~~~~i~~g~~l~~ 289 (472)
T PRK06904 220 PSDLIIVAARPSMGKTT-FAMNLCENAAMA------SEKPVLVFSL-EMPAEQIMMRMLASL--SRVDQTKIRTGQNLDQ 289 (472)
T ss_pred CCcEEEEEeCCCCChHH-HHHHHHHHHHHh------cCCeEEEEec-cCCHHHHHHHHHHhh--CCCCHHHhccCCCCCH
Confidence 34457789999999997 455555444321 1334565533 344555544433332 23332222223 2222
Q ss_pred HHHH-------HHhcCCcEEE-----eCHHHHHHHHHhccccccceeEEEEechhhhhcC
Q 003910 340 DQFK-------ELKAGCEIVI-----ATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDL 387 (787)
Q Consensus 340 ~~~~-------~l~~~~dIIV-----~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~ 387 (787)
..+. .+.....+.| .|+..+...+.+-......+++||||=.+.|...
T Consensus 290 ~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~ 349 (472)
T PRK06904 290 QDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRAP 349 (472)
T ss_pred HHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCCC
Confidence 2222 2223344655 3555555444322111225789999998877543
No 416
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=87.43 E-value=0.93 Score=44.97 Aligned_cols=51 Identities=22% Similarity=0.342 Sum_probs=29.3
Q ss_pred HHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHH
Q 003910 255 ALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQI 314 (787)
Q Consensus 255 ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi 314 (787)
...++-.++++++.+++|+|||..+ ..+...+... +..+++ +++.+|...+
T Consensus 40 ~~~~~~~~~~l~l~G~~G~GKThLa-~ai~~~~~~~-------g~~v~f-~~~~~L~~~l 90 (178)
T PF01695_consen 40 ALEFIENGENLILYGPPGTGKTHLA-VAIANEAIRK-------GYSVLF-ITASDLLDEL 90 (178)
T ss_dssp HH-S-SC--EEEEEESTTSSHHHHH-HHHHHHHHHT-------T--EEE-EEHHHHHHHH
T ss_pred cCCCcccCeEEEEEhhHhHHHHHHH-HHHHHHhccC-------CcceeE-eecCceeccc
Confidence 3444557789999999999999763 3444444332 444555 4566676654
No 417
>PRK13764 ATPase; Provisional
Probab=87.32 E-value=1.2 Score=52.27 Aligned_cols=27 Identities=15% Similarity=0.214 Sum_probs=21.0
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHHh
Q 003910 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla~llp~l~~l~ 288 (787)
..++++++++||||||.. +..++.++.
T Consensus 256 ~~~~ILIsG~TGSGKTTl-l~AL~~~i~ 282 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTF-AQALAEFYA 282 (602)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHh
Confidence 457899999999999974 556666663
No 418
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=86.94 E-value=2.3 Score=47.77 Aligned_cols=54 Identities=20% Similarity=0.232 Sum_probs=32.7
Q ss_pred CccCCccccCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHH
Q 003910 222 RPVKTFEDCGFSTQLMHAISKQ---GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 222 ~pi~sf~~~~l~~~l~~~l~~~---g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla 278 (787)
.|-.+|.+++--+...+.|... .+..|.-++...+ ...+.+++.+|+|+|||+.
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl---~~pkgvLL~GppGTGKT~L 195 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGI---DPPRGVLLYGPPGTGKTML 195 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCC---CCCceEEEECCCCCCHHHH
Confidence 4556788887666555555432 2232322222221 2347899999999999975
No 419
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=86.92 E-value=1.8 Score=44.30 Aligned_cols=15 Identities=27% Similarity=0.357 Sum_probs=13.6
Q ss_pred CEEEEccCCCchhHH
Q 003910 264 DIIGIAKTGSGKTAA 278 (787)
Q Consensus 264 dvii~a~TGsGKTla 278 (787)
++|+++|+|+|||..
T Consensus 52 h~lf~GPPG~GKTTL 66 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTL 66 (233)
T ss_dssp EEEEESSTTSSHHHH
T ss_pred eEEEECCCccchhHH
Confidence 699999999999964
No 420
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=86.91 E-value=1.7 Score=47.83 Aligned_cols=43 Identities=23% Similarity=0.176 Sum_probs=26.5
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHH
Q 003910 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTREL 310 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreL 310 (787)
.+..++++++||||||.. +-.++.++... ...+++.+--..|+
T Consensus 121 ~~g~ili~G~tGSGKTT~-l~al~~~i~~~------~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTT-LASMIDYINKN------AAGHIITIEDPIEY 163 (343)
T ss_pred cCcEEEEECCCCCCHHHH-HHHHHHhhCcC------CCCEEEEEcCChhh
Confidence 346789999999999975 44455555321 12345555544444
No 421
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=86.60 E-value=7.8 Score=44.24 Aligned_cols=138 Identities=21% Similarity=0.270 Sum_probs=75.1
Q ss_pred cCCCHHHHHHHHHCCCCCCcHHHHHHHHH----HHcC--------CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCC
Q 003910 230 CGFSTQLMHAISKQGYEKPTSIQCQALPI----ILSG--------RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEE 297 (787)
Q Consensus 230 ~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~----il~g--------rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~ 297 (787)
+|.+++-++.+...|.-.-.|.=.+.+.. +.+- ..+++.+|.|||||..+.-.++ ...
T Consensus 494 FG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~----------~S~ 563 (744)
T KOG0741|consen 494 FGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIAL----------SSD 563 (744)
T ss_pred cCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHh----------hcC
Confidence 57777777777776654444333333322 2111 2589999999999964322221 235
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEE
Q 003910 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLV 377 (787)
Q Consensus 298 ~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lV 377 (787)
-|.+=||.|....- .+....+..+.. .+.+. .-+.+.+||
T Consensus 564 FPFvKiiSpe~miG------------------------~sEsaKc~~i~k----------~F~DA------YkS~lsiiv 603 (744)
T KOG0741|consen 564 FPFVKIISPEDMIG------------------------LSESAKCAHIKK----------IFEDA------YKSPLSIIV 603 (744)
T ss_pred CCeEEEeChHHccC------------------------ccHHHHHHHHHH----------HHHHh------hcCcceEEE
Confidence 68888888853211 112222111110 01111 134578899
Q ss_pred EechhhhhcCC-----ChHHHHHH----hhhcCC-CceEEEEeccCcHHH
Q 003910 378 LDEADRMFDLG-----FEPQIRSI----VGQIRP-DRQTLLFSATMPRKV 417 (787)
Q Consensus 378 iDEah~m~~~~-----f~~~i~~i----l~~~~~-~~q~ll~SAT~~~~v 417 (787)
||+..+++++. |...+... +...+| .+++++|..|-...+
T Consensus 604 vDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~v 653 (744)
T KOG0741|consen 604 VDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREV 653 (744)
T ss_pred EcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHH
Confidence 99999999874 44433332 333343 456777777754443
No 422
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=86.40 E-value=1 Score=49.75 Aligned_cols=27 Identities=26% Similarity=0.477 Sum_probs=19.5
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHHhc
Q 003910 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMD 289 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla~llp~l~~l~~ 289 (787)
.--|+|+.+|||||||+. .--|..+++
T Consensus 225 eKSNvLllGPtGsGKTll--aqTLAr~ld 251 (564)
T KOG0745|consen 225 EKSNVLLLGPTGSGKTLL--AQTLARVLD 251 (564)
T ss_pred ecccEEEECCCCCchhHH--HHHHHHHhC
Confidence 345899999999999974 444555543
No 423
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=86.37 E-value=0.57 Score=48.23 Aligned_cols=14 Identities=36% Similarity=0.477 Sum_probs=12.2
Q ss_pred EEEEccCCCchhHH
Q 003910 265 IIGIAKTGSGKTAA 278 (787)
Q Consensus 265 vii~a~TGsGKTla 278 (787)
+++.|..|+|||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47899999999974
No 424
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=86.34 E-value=5.9 Score=43.49 Aligned_cols=41 Identities=17% Similarity=0.167 Sum_probs=27.8
Q ss_pred CcHHHHHHHHHHH----cCC---CEEEEccCCCchhHHHHHHHHHHHhc
Q 003910 248 PTSIQCQALPIIL----SGR---DIIGIAKTGSGKTAAFVLPMIVHIMD 289 (787)
Q Consensus 248 ptp~Q~~ai~~il----~gr---dvii~a~TGsGKTla~llp~l~~l~~ 289 (787)
++|||...+..+. ++| -.|+.+|.|.||+.. ...+..+++.
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~l-A~~~A~~LlC 50 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDAL-IYALSRWLMC 50 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHH-HHHHHHHHcC
Confidence 4567777766654 443 578999999999975 4445555554
No 425
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=86.26 E-value=2.9 Score=48.22 Aligned_cols=94 Identities=23% Similarity=0.327 Sum_probs=69.7
Q ss_pred EecCCCcchHH-HHHHhcCCcCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEE
Q 003910 448 HVIPSDAEKLP-WLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIA 526 (787)
Q Consensus 448 ~~~~~~~~k~~-~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVa 526 (787)
...+....|-. .++-.+. ..+.+||.+|+++-+......|...++.+..+++..+..++..++.....+..+||++
T Consensus 31 v~apTGsGKTl~y~lp~l~---~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~ 107 (470)
T TIGR00614 31 VVMPTGGGKSLCYQLPALC---SDGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYV 107 (470)
T ss_pred EEcCCCCcHhHHHHHHHHH---cCCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 34445555532 2233222 3568999999999999888999999999999999999999999999999999999999
Q ss_pred ehh-hhc------cC-CCCCccEEEE
Q 003910 527 TDV-AAR------GL-DIKSIKSVVN 544 (787)
Q Consensus 527 T~v-~~r------Gl-Dip~v~~VI~ 544 (787)
|.- +.. .+ ....+.+||+
T Consensus 108 TPe~l~~~~~~~~~l~~~~~i~~iVi 133 (470)
T TIGR00614 108 TPEKCSASNRLLQTLEERKGITLIAV 133 (470)
T ss_pred CHHHHcCchhHHHHHHhcCCcCEEEE
Confidence 953 222 12 4456667664
No 426
>CHL00095 clpC Clp protease ATP binding subunit
Probab=86.18 E-value=4.4 Score=50.20 Aligned_cols=17 Identities=41% Similarity=0.442 Sum_probs=15.1
Q ss_pred CCEEEEccCCCchhHHH
Q 003910 263 RDIIGIAKTGSGKTAAF 279 (787)
Q Consensus 263 rdvii~a~TGsGKTla~ 279 (787)
.++|+.+++|+|||...
T Consensus 201 ~n~lL~G~pGvGKTal~ 217 (821)
T CHL00095 201 NNPILIGEPGVGKTAIA 217 (821)
T ss_pred CCeEEECCCCCCHHHHH
Confidence 58999999999999763
No 427
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=86.14 E-value=4.5 Score=49.43 Aligned_cols=53 Identities=23% Similarity=0.308 Sum_probs=29.0
Q ss_pred ccCCccccCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHH
Q 003910 223 PVKTFEDCGFSTQLMHAISKQ---GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 223 pi~sf~~~~l~~~l~~~l~~~---g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla 278 (787)
+-.+|++++--...++.|... .+..|.-++... +..++.+++++|+|+|||..
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~g---i~~~~giLL~GppGtGKT~l 228 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLG---IEPPKGVLLYGPPGTGKTLL 228 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcC---CCCCceEEEECCCCCChHHH
Confidence 345777776544444444332 111111111111 12347899999999999964
No 428
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=86.04 E-value=2.9 Score=49.14 Aligned_cols=25 Identities=24% Similarity=0.093 Sum_probs=17.5
Q ss_pred CCEEEEccCCCchhHHHHHHHHHHHh
Q 003910 263 RDIIGIAKTGSGKTAAFVLPMIVHIM 288 (787)
Q Consensus 263 rdvii~a~TGsGKTla~llp~l~~l~ 288 (787)
+-+|++||.|+|||..+ ..+...++
T Consensus 39 hA~Lf~GP~GvGKTTlA-~~lAk~L~ 63 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIA-KIFAKAIN 63 (605)
T ss_pred ceEEEECCCCCCHHHHH-HHHHHHhc
Confidence 35889999999999763 33344443
No 429
>COG1485 Predicted ATPase [General function prediction only]
Probab=86.04 E-value=14 Score=40.26 Aligned_cols=117 Identities=15% Similarity=0.206 Sum_probs=67.3
Q ss_pred HHHHHHcC-----CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceE
Q 003910 255 ALPIILSG-----RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRV 329 (787)
Q Consensus 255 ai~~il~g-----rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v 329 (787)
++.|++.. +.+-+.++.|.|||. |+-++-+.+... + -.-++...-+..+++++..+-
T Consensus 53 ~l~~lf~r~~~~~~GlYl~GgVGrGKT~--LMD~Fy~~lp~~---~------k~R~HFh~FM~~vH~~l~~l~------- 114 (367)
T COG1485 53 ALGWLFGRDHGPVRGLYLWGGVGRGKTM--LMDLFYESLPGE---R------KRRLHFHRFMARVHQRLHTLQ------- 114 (367)
T ss_pred ccccccccCCCCCceEEEECCCCccHHH--HHHHHHhhCCcc---c------cccccHHHHHHHHHHHHHHHc-------
Confidence 55555554 678899999999994 555555443211 1 124677788888888888773
Q ss_pred EEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHhhh-cCCCceEEE
Q 003910 330 SAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQ-IRPDRQTLL 408 (787)
Q Consensus 330 ~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~-~~~~~q~ll 408 (787)
| .. +.| +. +.+-+ ..+..+|+|||.|- .|.+=.-.+..+++. +.....++.
T Consensus 115 ----g-~~------------dpl---~~-iA~~~------~~~~~vLCfDEF~V-tDI~DAMiL~rL~~~Lf~~GV~lva 166 (367)
T COG1485 115 ----G-QT------------DPL---PP-IADEL------AAETRVLCFDEFEV-TDIADAMILGRLLEALFARGVVLVA 166 (367)
T ss_pred ----C-CC------------Ccc---HH-HHHHH------HhcCCEEEeeeeee-cChHHHHHHHHHHHHHHHCCcEEEE
Confidence 1 11 111 00 01111 24567799999983 221111223333333 345778889
Q ss_pred EeccCcHHH
Q 003910 409 FSATMPRKV 417 (787)
Q Consensus 409 ~SAT~~~~v 417 (787)
.|-|.|.++
T Consensus 167 TSN~~P~~L 175 (367)
T COG1485 167 TSNTAPDNL 175 (367)
T ss_pred eCCCChHHh
Confidence 999988764
No 430
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=85.86 E-value=3.4 Score=48.10 Aligned_cols=40 Identities=13% Similarity=0.157 Sum_probs=26.1
Q ss_pred ccceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEe
Q 003910 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (787)
Q Consensus 370 l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~S 410 (787)
.....++||||||+|-... ...+.+.+...++...+|+.+
T Consensus 115 ~~~~KVvIIDEad~Lt~~A-~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKEA-FNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHHH-HHHHHHHHhhcCCceEEEEEE
Confidence 4578999999999876432 234555666655555555554
No 431
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=85.73 E-value=3.8 Score=46.01 Aligned_cols=55 Identities=22% Similarity=0.288 Sum_probs=33.5
Q ss_pred cceeEEEEechhhhhcCC--------C----hHHHHHHhhhcCCCceEEEEecc-CcHHHHHHHHHHh
Q 003910 371 SRVTYLVLDEADRMFDLG--------F----EPQIRSIVGQIRPDRQTLLFSAT-MPRKVEKLAREIL 425 (787)
Q Consensus 371 ~~i~~lViDEah~m~~~~--------f----~~~i~~il~~~~~~~q~ll~SAT-~~~~v~~l~~~~l 425 (787)
....+++|||+|.++..- . +-.+..+.....++-++++++|| .|..+.+-++..+
T Consensus 244 ~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~Rrf 311 (428)
T KOG0740|consen 244 LQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARRRF 311 (428)
T ss_pred cCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHHHh
Confidence 356788899999887421 0 11122222333456689999999 6777766665543
No 432
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=85.65 E-value=2.8 Score=51.26 Aligned_cols=16 Identities=25% Similarity=0.486 Sum_probs=14.2
Q ss_pred CCEEEEccCCCchhHH
Q 003910 263 RDIIGIAKTGSGKTAA 278 (787)
Q Consensus 263 rdvii~a~TGsGKTla 278 (787)
+.+++.+|+|+|||+.
T Consensus 488 ~giLL~GppGtGKT~l 503 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLL 503 (733)
T ss_pred ceEEEECCCCCCHHHH
Confidence 5689999999999974
No 433
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=85.58 E-value=4.4 Score=40.58 Aligned_cols=71 Identities=20% Similarity=0.301 Sum_probs=51.3
Q ss_pred CCCEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhcCCccEEEEeh-----hhhc-cCCCCCc
Q 003910 470 DGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-----VAAR-GLDIKSI 539 (787)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-----v~~r-GlDip~v 539 (787)
..++||.|++...+...+..+... ++.+..++|+.+..+....+. +...|+|+|. .+.. -++++.+
T Consensus 69 ~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~~~~~~~l 144 (203)
T cd00268 69 GPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERGKLDLSKV 144 (203)
T ss_pred CceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCCChhhC
Confidence 457999999999888877766554 678889999998766544333 5678999994 2222 3567778
Q ss_pred cEEEE
Q 003910 540 KSVVN 544 (787)
Q Consensus 540 ~~VI~ 544 (787)
.++|.
T Consensus 145 ~~lIv 149 (203)
T cd00268 145 KYLVL 149 (203)
T ss_pred CEEEE
Confidence 88774
No 434
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=85.49 E-value=1.5 Score=47.19 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=14.1
Q ss_pred CCEEEEccCCCchhHH
Q 003910 263 RDIIGIAKTGSGKTAA 278 (787)
Q Consensus 263 rdvii~a~TGsGKTla 278 (787)
.++++++|.|+|||..
T Consensus 31 ~~~ll~Gp~G~GKT~l 46 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTL 46 (305)
T ss_pred CeEEEECCCCCCHHHH
Confidence 4699999999999964
No 435
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=85.42 E-value=2.4 Score=52.67 Aligned_cols=92 Identities=13% Similarity=0.194 Sum_probs=71.7
Q ss_pred CcchHHHHHHhc-CCcCCCCCEEEEecccccHHHHHHHHHH----cCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEe
Q 003910 453 DAEKLPWLLEKL-PGMIDDGDVLVFASKKTTVDEIESQLAQ----KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIAT 527 (787)
Q Consensus 453 ~~~k~~~L~~~L-~~~~~~~kvLVF~~s~~~a~~l~~~L~~----~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT 527 (787)
...|-...+... .......+|.|.|||.--|++=++.|++ ..+++..+.-=.+.++...+++..++|+++|||.|
T Consensus 625 GFGKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGT 704 (1139)
T COG1197 625 GFGKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGT 704 (1139)
T ss_pred CCcHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEec
Confidence 445655444433 2233455899999998777666665554 47788999999999999999999999999999999
Q ss_pred -hhhhccCCCCCccEEEE
Q 003910 528 -DVAARGLDIKSIKSVVN 544 (787)
Q Consensus 528 -~v~~rGlDip~v~~VI~ 544 (787)
.+++..+-+.++-.||+
T Consensus 705 HrLL~kdv~FkdLGLlII 722 (1139)
T COG1197 705 HRLLSKDVKFKDLGLLII 722 (1139)
T ss_pred hHhhCCCcEEecCCeEEE
Confidence 56778899999999885
No 436
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=85.38 E-value=1.4 Score=50.06 Aligned_cols=40 Identities=25% Similarity=0.344 Sum_probs=31.0
Q ss_pred cHHHHHHHHHHHcCCC--EEEEccCCCchhHHHHHHHHHHHhc
Q 003910 249 TSIQCQALPIILSGRD--IIGIAKTGSGKTAAFVLPMIVHIMD 289 (787)
Q Consensus 249 tp~Q~~ai~~il~grd--vii~a~TGsGKTla~llp~l~~l~~ 289 (787)
.+.|.+.+..+++... +|+.+|||||||.+ +..++..+..
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~ 284 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNT 284 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcC
Confidence 6888888888877654 67789999999986 6667777654
No 437
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=85.36 E-value=0.85 Score=53.87 Aligned_cols=57 Identities=25% Similarity=0.167 Sum_probs=43.5
Q ss_pred CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEE
Q 003910 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVY 333 (787)
Q Consensus 263 rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~ 333 (787)
++++++||||||||..+++|-|... +.-+||+=|--|+........++. |.+|.++-
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~----------~~S~VV~DpKGEl~~~Ta~~R~~~----G~~V~vfd 215 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW----------EDSVVVHDIKLENYELTSGWREKQ----GQKVFVWE 215 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC----------CCCEEEEeCcHHHHHHHHHHHHHC----CCeEEEEe
Confidence 5799999999999999999988763 123788999999997666555443 66665554
No 438
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=85.32 E-value=5.1 Score=46.56 Aligned_cols=54 Identities=17% Similarity=0.238 Sum_probs=29.1
Q ss_pred CccCCccccCCCHHHHHHHHHC--CCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHH
Q 003910 222 RPVKTFEDCGFSTQLMHAISKQ--GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 222 ~pi~sf~~~~l~~~l~~~l~~~--g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla 278 (787)
.|-.+|+++.-.+.+.+.+... -+..|..++... ....+.+|+.+|+|+|||+.
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g---~~~~~giLL~GppGtGKT~l 104 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLG---AKIPKGVLLVGPPGTGKTLL 104 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcC---CCCCCcEEEECCCCCCHHHH
Confidence 4556777776555544444321 011222222211 11225799999999999974
No 439
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=85.27 E-value=9.3 Score=47.43 Aligned_cols=16 Identities=38% Similarity=0.451 Sum_probs=14.5
Q ss_pred CCEEEEccCCCchhHH
Q 003910 263 RDIIGIAKTGSGKTAA 278 (787)
Q Consensus 263 rdvii~a~TGsGKTla 278 (787)
.++|+++|.|+|||..
T Consensus 209 ~n~lLvG~pGvGKTal 224 (852)
T TIGR03345 209 NNPILTGEAGVGKTAV 224 (852)
T ss_pred CceeEECCCCCCHHHH
Confidence 4899999999999975
No 440
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=85.23 E-value=3.8 Score=48.25 Aligned_cols=43 Identities=19% Similarity=0.308 Sum_probs=24.2
Q ss_pred ccceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEeccCc
Q 003910 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMP 414 (787)
Q Consensus 370 l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~ 414 (787)
.....++||||+|.|....+ ..+.+.+... +..-+++|.+|-+
T Consensus 117 ~~~~KVvIIDEa~~Ls~~a~-naLLK~LEep-p~~~vfI~~tte~ 159 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSNSAF-NALLKTIEEP-PPYIVFIFATTEV 159 (563)
T ss_pred cCCCEEEEEEChhhcCHHHH-HHHHHhhccC-CCCEEEEEecCCh
Confidence 45778999999998754321 2333444442 3334444555533
No 441
>PRK04328 hypothetical protein; Provisional
Probab=85.09 E-value=4.5 Score=42.39 Aligned_cols=52 Identities=19% Similarity=0.188 Sum_probs=32.3
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003910 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~ 321 (787)
.|.-+++.+++|+|||+..+--+...+ . .+..++++. +.+-..++.+.+..+
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~-~-------~ge~~lyis-~ee~~~~i~~~~~~~ 73 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGL-Q-------MGEPGVYVA-LEEHPVQVRRNMRQF 73 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH-h-------cCCcEEEEE-eeCCHHHHHHHHHHc
Confidence 346788999999999975333333333 1 244466664 555666666666655
No 442
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=85.08 E-value=4.9 Score=44.90 Aligned_cols=19 Identities=26% Similarity=0.239 Sum_probs=16.8
Q ss_pred HcCCCEEEEccCCCchhHH
Q 003910 260 LSGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 260 l~grdvii~a~TGsGKTla 278 (787)
-.|+.+++.+++|+|||..
T Consensus 166 g~Gq~~~IvG~~g~GKTtL 184 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVL 184 (415)
T ss_pred CCCCEEEEECCCCCChhHH
Confidence 3778999999999999974
No 443
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=85.02 E-value=5.3 Score=43.42 Aligned_cols=51 Identities=12% Similarity=0.214 Sum_probs=29.9
Q ss_pred HHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEec
Q 003910 358 RLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSA 411 (787)
Q Consensus 358 ~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SA 411 (787)
.+...+....+ ....+++|||+||.|-... ...+.++++.-+ ...+|+++.
T Consensus 111 ~i~~~l~~~p~-~~~~kVvII~~ae~m~~~a-aNaLLK~LEEPp-~~~fILi~~ 161 (314)
T PRK07399 111 EIKRFLSRPPL-EAPRKVVVIEDAETMNEAA-ANALLKTLEEPG-NGTLILIAP 161 (314)
T ss_pred HHHHHHccCcc-cCCceEEEEEchhhcCHHH-HHHHHHHHhCCC-CCeEEEEEC
Confidence 34444443332 3578999999999975432 345666666644 554444443
No 444
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=85.00 E-value=4.9 Score=42.43 Aligned_cols=37 Identities=16% Similarity=0.067 Sum_probs=23.6
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEc
Q 003910 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA 305 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~ 305 (787)
.|.-+++++++|+|||.. .+-++.+... .+..++++.
T Consensus 35 ~gs~~lI~G~pGtGKT~l-~~qf~~~~a~-------~Ge~vlyis 71 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLM-VEQFAVTQAS-------RGNPVLFVT 71 (259)
T ss_pred CCcEEEEEcCCCCCHHHH-HHHHHHHHHh-------CCCcEEEEE
Confidence 446789999999999974 3333333222 244567765
No 445
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=84.99 E-value=4.6 Score=43.97 Aligned_cols=42 Identities=12% Similarity=0.060 Sum_probs=27.9
Q ss_pred CCcHHHHHHHHHHH----cCC---CEEEEccCCCchhHHHHHHHHHHHhc
Q 003910 247 KPTSIQCQALPIIL----SGR---DIIGIAKTGSGKTAAFVLPMIVHIMD 289 (787)
Q Consensus 247 ~ptp~Q~~ai~~il----~gr---dvii~a~TGsGKTla~llp~l~~l~~ 289 (787)
.++|+|...+..+. +++ -.++.++.|.||+.. ...+...++.
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~l-A~~~a~~llC 51 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESL-VELFSRALLC 51 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHH-HHHHHHHHcC
Confidence 35567776666654 443 589999999999964 3444455544
No 446
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=84.88 E-value=7.6 Score=44.26 Aligned_cols=112 Identities=19% Similarity=0.144 Sum_probs=56.4
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHH
Q 003910 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ 341 (787)
Q Consensus 262 grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~ 341 (787)
|.=+++.|++|+|||. |++-++.++.. ..+..++++.. -.-..|+...+..... ++....+..|.-...+
T Consensus 195 G~l~vi~g~pg~GKT~-~~l~~a~~~a~------~~g~~vl~~Sl-Em~~~~i~~R~~~~~~--~v~~~~~~~g~l~~~~ 264 (434)
T TIGR00665 195 SDLIILAARPSMGKTA-FALNIAENAAI------KEGKPVAFFSL-EMSAEQLAMRMLSSES--RVDSQKLRTGKLSDED 264 (434)
T ss_pred CeEEEEEeCCCCChHH-HHHHHHHHHHH------hCCCeEEEEeC-cCCHHHHHHHHHHHhc--CCCHHHhccCCCCHHH
Confidence 4567889999999997 45555555432 12344566543 3344455444433322 3332222223222222
Q ss_pred HH-------HHhcCCcEEE-----eCHHHHHHHHHhccccccceeEEEEechhhhh
Q 003910 342 FK-------ELKAGCEIVI-----ATPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (787)
Q Consensus 342 ~~-------~l~~~~dIIV-----~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~ 385 (787)
+. .+. ...+.| .|+..+...+..-... ..+++||||=.+.|.
T Consensus 265 ~~~~~~a~~~l~-~~~l~i~d~~~~~~~~i~~~i~~~~~~-~~~~~vvID~l~~i~ 318 (434)
T TIGR00665 265 WEKLTSAAGKLS-EAPLYIDDTPGLTITELRAKARRLKRE-HGLGLIVIDYLQLMS 318 (434)
T ss_pred HHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHhcC
Confidence 22 222 234554 2455555544322211 247899999998774
No 447
>PRK10436 hypothetical protein; Provisional
Probab=84.82 E-value=1.4 Score=50.41 Aligned_cols=35 Identities=26% Similarity=0.285 Sum_probs=23.1
Q ss_pred HHHHHHHHHc--CCCEEEEccCCCchhHHHHHHHHHHH
Q 003910 252 QCQALPIILS--GRDIIGIAKTGSGKTAAFVLPMIVHI 287 (787)
Q Consensus 252 Q~~ai~~il~--grdvii~a~TGsGKTla~llp~l~~l 287 (787)
|.+.+..++. +--+|++++||||||.+ +..+|.++
T Consensus 206 ~~~~l~~~~~~~~GliLvtGpTGSGKTTt-L~a~l~~~ 242 (462)
T PRK10436 206 QLAQFRQALQQPQGLILVTGPTGSGKTVT-LYSALQTL 242 (462)
T ss_pred HHHHHHHHHHhcCCeEEEECCCCCChHHH-HHHHHHhh
Confidence 3344444443 34588999999999986 45566665
No 448
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=84.70 E-value=7.3 Score=38.69 Aligned_cols=41 Identities=12% Similarity=0.280 Sum_probs=23.9
Q ss_pred ccceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEecc
Q 003910 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSAT 412 (787)
Q Consensus 370 l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT 412 (787)
.....+|||||+|+|.... ...+...++..++.. +++|.++
T Consensus 94 ~~~~kviiide~~~l~~~~-~~~Ll~~le~~~~~~-~~il~~~ 134 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEAA-ANALLKTLEEPPPNT-LFILITP 134 (188)
T ss_pred cCCeEEEEEechhhhCHHH-HHHHHHHhcCCCCCe-EEEEEEC
Confidence 3567899999999976431 233445555533333 3444444
No 449
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=84.60 E-value=4.6 Score=47.78 Aligned_cols=72 Identities=21% Similarity=0.381 Sum_probs=52.1
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHH---HHhc-CCcEEEeCHHHHHHHHHhccccccc
Q 003910 297 EGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK---ELKA-GCEIVIATPGRLIDMLKMKALTMSR 372 (787)
Q Consensus 297 ~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~---~l~~-~~dIIV~Tp~~L~~~l~~~~~~l~~ 372 (787)
.+.++||.|+|+..|.++++.+.+. ++.+.+++|+.+..+... .+.. ..+||||| +.+. ..+++..
T Consensus 256 ~~~k~LVF~nt~~~ae~l~~~L~~~----g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaT-----dv~a-rGIDip~ 325 (572)
T PRK04537 256 EGARTMVFVNTKAFVERVARTLERH----GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVAT-----DVAA-RGLHIDG 325 (572)
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHc----CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe-----hhhh-cCCCccC
Confidence 3567899999999999988877664 789999999887655433 2333 47999999 3333 3456777
Q ss_pred eeEEEE
Q 003910 373 VTYLVL 378 (787)
Q Consensus 373 i~~lVi 378 (787)
+++||.
T Consensus 326 V~~VIn 331 (572)
T PRK04537 326 VKYVYN 331 (572)
T ss_pred CCEEEE
Confidence 777764
No 450
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=84.59 E-value=2.6 Score=50.47 Aligned_cols=71 Identities=18% Similarity=0.318 Sum_probs=52.7
Q ss_pred CCCEEEEecccccHHHHHHHHHHc-----CCceeeccCCCCHHHHHHHHHHhhcCCccEEEEeh-----hhhc-cCCCCC
Q 003910 470 DGDVLVFASKKTTVDEIESQLAQK-----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-----VAAR-GLDIKS 538 (787)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~-----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-----v~~r-GlDip~ 538 (787)
..++||.|++++-+.++++.|... ++.+..+||+.+...+...+ + ....|||+|. .+.+ .+++.+
T Consensus 74 ~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l---~-~~~~IVVgTPgrl~d~l~r~~l~l~~ 149 (629)
T PRK11634 74 APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL---R-QGPQIVVGTPGRLLDHLKRGTLDLSK 149 (629)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCcchhh
Confidence 457999999999999888877653 68899999998776554433 2 3578999993 3333 377888
Q ss_pred ccEEEE
Q 003910 539 IKSVVN 544 (787)
Q Consensus 539 v~~VI~ 544 (787)
+.+||.
T Consensus 150 l~~lVl 155 (629)
T PRK11634 150 LSGLVL 155 (629)
T ss_pred ceEEEe
Confidence 888774
No 451
>PRK06620 hypothetical protein; Validated
Probab=84.19 E-value=5.3 Score=40.86 Aligned_cols=105 Identities=15% Similarity=0.127 Sum_probs=58.0
Q ss_pred EEEEcCcHHHHHHHHHHHHH-HhhhcC-ceEEEEECC--CChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEE
Q 003910 301 GVICAPTRELAHQIYLETKK-FAKSHG-IRVSAVYGG--MSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYL 376 (787)
Q Consensus 301 vLIl~PtreLa~Qi~~~~~~-~~~~~~-i~v~~~~gg--~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~l 376 (787)
-.|+.+...+|.++...+.+ +.. .. .+..+++|. ..+......+.......+.+....... .+...++|
T Consensus 17 ~Fvvg~~N~~a~~~~~~~~~~~~~-~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~~~~~~~~------~~~~~d~l 89 (214)
T PRK06620 17 EFIVSSSNDQAYNIIKNWQCGFGV-NPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIKDIFFNEE------ILEKYNAF 89 (214)
T ss_pred hhEecccHHHHHHHHHHHHHcccc-CCCcceEEEECCCCCCHHHHHHHHHhccCCEEcchhhhchh------HHhcCCEE
Confidence 47888877777776555543 210 01 145788884 445555554444444455443322211 12456789
Q ss_pred EEechhhhhcCCChHHHHHHhhhcCCC-ceEEEEeccCcHH
Q 003910 377 VLDEADRMFDLGFEPQIRSIVGQIRPD-RQTLLFSATMPRK 416 (787)
Q Consensus 377 ViDEah~m~~~~f~~~i~~il~~~~~~-~q~ll~SAT~~~~ 416 (787)
+|||+|.+. ...+..+++.+... .++|+.|.|.|+.
T Consensus 90 liDdi~~~~----~~~lf~l~N~~~e~g~~ilits~~~p~~ 126 (214)
T PRK06620 90 IIEDIENWQ----EPALLHIFNIINEKQKYLLLTSSDKSRN 126 (214)
T ss_pred EEeccccch----HHHHHHHHHHHHhcCCEEEEEcCCCccc
Confidence 999999642 23556666666443 4555555555554
No 452
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=84.13 E-value=0.93 Score=48.04 Aligned_cols=28 Identities=50% Similarity=0.853 Sum_probs=15.3
Q ss_pred cCCCCCCCCCCCCCCCCCCCcccCCCCC
Q 003910 618 RKGGGKKGKGRGGAGRGVRGVDFGLGIG 645 (787)
Q Consensus 618 r~~g~~~g~g~gggg~g~rg~~~g~g~~ 645 (787)
+.+|+..|+|++|||++++|.+.|+|+|
T Consensus 429 rdggg~~gggr~gggr~gggrgrggggg 456 (465)
T KOG3973|consen 429 RDGGGRDGGGRDGGGRDGGGRGRGGGGG 456 (465)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 4445555666666666555554444443
No 453
>PRK08506 replicative DNA helicase; Provisional
Probab=84.11 E-value=7.5 Score=44.83 Aligned_cols=113 Identities=18% Similarity=0.164 Sum_probs=56.5
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHH
Q 003910 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ 341 (787)
Q Consensus 262 grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~ 341 (787)
|.=+|+.|.+|.|||. |++-++.++.. .+..++++.. -.-+.|+...+.... .++....+..|.-....
T Consensus 192 G~LivIaarpg~GKT~-fal~ia~~~~~-------~g~~V~~fSl-EMs~~ql~~Rlla~~--s~v~~~~i~~~~l~~~e 260 (472)
T PRK08506 192 GDLIIIAARPSMGKTT-LCLNMALKALN-------QDKGVAFFSL-EMPAEQLMLRMLSAK--TSIPLQNLRTGDLDDDE 260 (472)
T ss_pred CceEEEEcCCCCChHH-HHHHHHHHHHh-------cCCcEEEEeC-cCCHHHHHHHHHHHh--cCCCHHHHhcCCCCHHH
Confidence 3457889999999997 45555555532 2334565533 344455544443322 23322222222222222
Q ss_pred HHHH------hcCCcEEEe-----CHHHHHHHHHhccccccceeEEEEechhhhh
Q 003910 342 FKEL------KAGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (787)
Q Consensus 342 ~~~l------~~~~dIIV~-----Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~ 385 (787)
+..+ .....+.|. |+..+...+++-......+++||||=.+.|.
T Consensus 261 ~~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~ 315 (472)
T PRK08506 261 WERLSDACDELSKKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMS 315 (472)
T ss_pred HHHHHHHHHHHHcCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhcc
Confidence 2211 123445553 5555555444321112357899999999765
No 454
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=84.07 E-value=3.9 Score=45.89 Aligned_cols=16 Identities=25% Similarity=0.451 Sum_probs=14.5
Q ss_pred CCEEEEccCCCchhHH
Q 003910 263 RDIIGIAKTGSGKTAA 278 (787)
Q Consensus 263 rdvii~a~TGsGKTla 278 (787)
+.+|+++|+|+|||+.
T Consensus 166 ~gvLL~GppGtGKT~l 181 (389)
T PRK03992 166 KGVLLYGPPGTGKTLL 181 (389)
T ss_pred CceEEECCCCCChHHH
Confidence 5799999999999975
No 455
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=83.79 E-value=2 Score=50.83 Aligned_cols=44 Identities=25% Similarity=0.391 Sum_probs=32.3
Q ss_pred ccceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEeccC
Q 003910 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATM 413 (787)
Q Consensus 370 l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~ 413 (787)
+.+-.++|+|||..-+|..-+..+...+..+..++.+++.+.-+
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRl 524 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRL 524 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccH
Confidence 55668999999998888877888888877666665555555443
No 456
>PRK05748 replicative DNA helicase; Provisional
Probab=83.75 E-value=6.7 Score=44.94 Aligned_cols=114 Identities=17% Similarity=0.135 Sum_probs=56.8
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHH
Q 003910 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ 341 (787)
Q Consensus 262 grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~ 341 (787)
|.-+++.|.+|+|||. |.+-++.++... .+..++++. ...-..|+...+.... .++....+..|.-....
T Consensus 203 G~livIaarpg~GKT~-~al~ia~~~a~~------~g~~v~~fS-lEms~~~l~~R~l~~~--~~v~~~~i~~~~l~~~e 272 (448)
T PRK05748 203 NDLIIVAARPSVGKTA-FALNIAQNVATK------TDKNVAIFS-LEMGAESLVMRMLCAE--GNIDAQRLRTGQLTDDD 272 (448)
T ss_pred CceEEEEeCCCCCchH-HHHHHHHHHHHh------CCCeEEEEe-CCCCHHHHHHHHHHHh--cCCCHHHhhcCCCCHHH
Confidence 3557889999999997 455555554321 233455553 3344455544442221 12222212223222223
Q ss_pred HHHH------hcCCcEEEe-----CHHHHHHHHHhccccccceeEEEEechhhhh
Q 003910 342 FKEL------KAGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (787)
Q Consensus 342 ~~~l------~~~~dIIV~-----Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~ 385 (787)
+..+ .....+.|. |+..+...+.+-......+++||||=.+.|.
T Consensus 273 ~~~~~~a~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~ 327 (448)
T PRK05748 273 WPKLTIAMGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQ 327 (448)
T ss_pred HHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcC
Confidence 2221 123445553 4455554443221111257899999999874
No 457
>PRK08840 replicative DNA helicase; Provisional
Probab=83.48 E-value=12 Score=43.13 Aligned_cols=115 Identities=15% Similarity=0.119 Sum_probs=54.3
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHH
Q 003910 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~ 340 (787)
.|.=+|+.|.+|.|||.. .+-+..++... .+..++|+..- .-..|+...+-... .++...-+..|.-...
T Consensus 216 ~g~LiviaarPg~GKTaf-alnia~~~a~~------~~~~v~~fSlE-Ms~~ql~~Rlla~~--s~v~~~~i~~~~l~~~ 285 (464)
T PRK08840 216 GSDLIIVAARPSMGKTTF-AMNLCENAAMD------QDKPVLIFSLE-MPAEQLMMRMLASL--SRVDQTKIRTGQLDDE 285 (464)
T ss_pred CCceEEEEeCCCCchHHH-HHHHHHHHHHh------CCCeEEEEecc-CCHHHHHHHHHHhh--CCCCHHHHhcCCCCHH
Confidence 345578899999999974 44444443211 13345555332 33444443332221 1222222222222222
Q ss_pred HHHH-------HhcCCcEEEe-----CHHHHHHHHHhccccccceeEEEEechhhhh
Q 003910 341 QFKE-------LKAGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (787)
Q Consensus 341 ~~~~-------l~~~~dIIV~-----Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~ 385 (787)
.+.. +.....+.|. |...+...+.+-......+++||||=.|.|.
T Consensus 286 e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~ 342 (464)
T PRK08840 286 DWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMR 342 (464)
T ss_pred HHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcC
Confidence 2222 2223445553 3444444332221111247899999998774
No 458
>PRK08760 replicative DNA helicase; Provisional
Probab=83.44 E-value=8.2 Score=44.58 Aligned_cols=113 Identities=17% Similarity=0.105 Sum_probs=56.3
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHH
Q 003910 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ 341 (787)
Q Consensus 262 grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~ 341 (787)
|.=+||.|.+|+|||. |++-+..++... .+..++|+.. ..-..|+...+..... ++....+..|......
T Consensus 229 G~LivIaarPg~GKTa-fal~iA~~~a~~------~g~~V~~fSl-EMs~~ql~~Rl~a~~s--~i~~~~i~~g~l~~~e 298 (476)
T PRK08760 229 TDLIILAARPAMGKTT-FALNIAEYAAIK------SKKGVAVFSM-EMSASQLAMRLISSNG--RINAQRLRTGALEDED 298 (476)
T ss_pred CceEEEEeCCCCChhH-HHHHHHHHHHHh------cCCceEEEec-cCCHHHHHHHHHHhhC--CCcHHHHhcCCCCHHH
Confidence 3457889999999997 455555544321 1334555533 2334455554443322 2222112222222222
Q ss_pred HHHH------hcCCcEEEe-----CHHHHHHHHHhccccccceeEEEEechhhhh
Q 003910 342 FKEL------KAGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (787)
Q Consensus 342 ~~~l------~~~~dIIV~-----Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~ 385 (787)
+..+ .....+.|. |+..+...+.+-.. -..+++||||=.+.|.
T Consensus 299 ~~~~~~a~~~l~~~~l~I~d~~~~t~~~I~~~~r~l~~-~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 299 WARVTGAIKMLKETKIFIDDTPGVSPEVLRSKCRRLKR-EHDLGLIVIDYLQLMS 352 (476)
T ss_pred HHHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEecHHhcC
Confidence 2221 122455544 45555554432211 2357899999998774
No 459
>PRK07004 replicative DNA helicase; Provisional
Probab=83.44 E-value=7.6 Score=44.63 Aligned_cols=116 Identities=16% Similarity=0.125 Sum_probs=55.7
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHH
Q 003910 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~ 340 (787)
.|.=+|+.|.+|+|||.. ++-+..++.. ..+..++++.. ..-..|+...+-.. ..++....+.-|.-...
T Consensus 212 ~g~liviaarpg~GKT~~-al~ia~~~a~------~~~~~v~~fSl-EM~~~ql~~R~la~--~~~v~~~~i~~g~l~~~ 281 (460)
T PRK07004 212 GGELIIVAGRPSMGKTAF-SMNIGEYVAV------EYGLPVAVFSM-EMPGTQLAMRMLGS--VGRLDQHRMRTGRLTDE 281 (460)
T ss_pred CCceEEEEeCCCCCccHH-HHHHHHHHHH------HcCCeEEEEeC-CCCHHHHHHHHHHh--hcCCCHHHHhcCCCCHH
Confidence 345678899999999974 5555444421 12334555532 23334443333211 11222221222222223
Q ss_pred HHHHH------hcCCcEEEe-----CHHHHHHHHHhccccccceeEEEEechhhhhc
Q 003910 341 QFKEL------KAGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMFD 386 (787)
Q Consensus 341 ~~~~l------~~~~dIIV~-----Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~ 386 (787)
.+..+ .....+.|. |+..+...+.+-......+++||||=.+.|..
T Consensus 282 e~~~~~~a~~~l~~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~~ 338 (460)
T PRK07004 282 DWPKLTHAVQKMSEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMSG 338 (460)
T ss_pred HHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhccC
Confidence 22221 123556663 45455444332211123478999999998753
No 460
>PRK07413 hypothetical protein; Validated
Probab=83.33 E-value=6.5 Score=43.60 Aligned_cols=54 Identities=17% Similarity=0.274 Sum_probs=41.7
Q ss_pred ccceeEEEEechhhhhcCCCh--HHHHHHhhhcCCCceEEEEeccCcHHHHHHHHH
Q 003910 370 MSRVTYLVLDEADRMFDLGFE--PQIRSIVGQIRPDRQTLLFSATMPRKVEKLARE 423 (787)
Q Consensus 370 l~~i~~lViDEah~m~~~~f~--~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~ 423 (787)
-..+++|||||+-..++.++. ..+..++..-++...+|+..-.+|+.+.+++..
T Consensus 123 sg~ydlvILDEi~~Al~~gll~~eevl~~L~~rP~~~evVLTGR~ap~~Lie~ADl 178 (382)
T PRK07413 123 SGLYSVVVLDELNPVLDLGLLPVDEVVNTLKSRPEGLEIIITGRAAPQSLLDIADL 178 (382)
T ss_pred CCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEeCCCCCHHHHHhCCe
Confidence 357899999999988887754 457777777677777888777789888776643
No 461
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=83.30 E-value=4.7 Score=40.87 Aligned_cols=17 Identities=35% Similarity=0.485 Sum_probs=14.5
Q ss_pred CCCEEEEccCCCchhHH
Q 003910 262 GRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 262 grdvii~a~TGsGKTla 278 (787)
.+.+++.||-|+|||..
T Consensus 20 ~~~~~l~G~rg~GKTsL 36 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSL 36 (234)
T ss_dssp SSEEEEEESTTSSHHHH
T ss_pred CcEEEEEcCCcCCHHHH
Confidence 36789999999999974
No 462
>PHA00350 putative assembly protein
Probab=83.20 E-value=8.5 Score=43.06 Aligned_cols=23 Identities=22% Similarity=0.236 Sum_probs=16.6
Q ss_pred EEEEccCCCchhHHHHH-HHHHHH
Q 003910 265 IIGIAKTGSGKTAAFVL-PMIVHI 287 (787)
Q Consensus 265 vii~a~TGsGKTla~ll-p~l~~l 287 (787)
.|+.+..|||||+-.+. .++..+
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~pal 27 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPAL 27 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHH
Confidence 47889999999987665 344443
No 463
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=82.88 E-value=2.6 Score=50.83 Aligned_cols=71 Identities=18% Similarity=0.109 Sum_probs=55.0
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhh
Q 003910 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (787)
Q Consensus 247 ~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~ 323 (787)
.+++-|.+++... ...++|.|..|||||.+ +..-+.|+........ ..+|.|+=|+-.|.++.+.+.++..
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~v-lt~Ria~li~~~~v~p---~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRV-LTERIAYLIAAGGVDP---EQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhh-HHHHHHHHHHcCCcCh---HHeeeeechHHHHHHHHHHHHHHhC
Confidence 5789999998776 56889999999999987 4445556655433322 2388899999999999999999875
No 464
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=82.87 E-value=3.2 Score=43.95 Aligned_cols=36 Identities=22% Similarity=0.290 Sum_probs=23.4
Q ss_pred HHHHHHHHHHc-C-CCEEEEccCCCchhHHHHHHHHHHH
Q 003910 251 IQCQALPIILS-G-RDIIGIAKTGSGKTAAFVLPMIVHI 287 (787)
Q Consensus 251 ~Q~~ai~~il~-g-rdvii~a~TGsGKTla~llp~l~~l 287 (787)
.|.+.|..++. . ..++++++||||||.. +..++.++
T Consensus 67 ~~~~~l~~~~~~~~GlilisG~tGSGKTT~-l~all~~i 104 (264)
T cd01129 67 ENLEIFRKLLEKPHGIILVTGPTGSGKTTT-LYSALSEL 104 (264)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCcHHHH-HHHHHhhh
Confidence 34444444443 3 3588999999999975 45555665
No 465
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=82.86 E-value=6.5 Score=41.73 Aligned_cols=23 Identities=26% Similarity=0.418 Sum_probs=17.3
Q ss_pred HHHHHc-C--CCEEEEccCCCchhHH
Q 003910 256 LPIILS-G--RDIIGIAKTGSGKTAA 278 (787)
Q Consensus 256 i~~il~-g--rdvii~a~TGsGKTla 278 (787)
++.+.. + +++++.+++|+|||..
T Consensus 102 l~~l~~~~~~~~~~i~g~~g~GKttl 127 (270)
T TIGR02858 102 LPYLVRNNRVLNTLIISPPQCGKTTL 127 (270)
T ss_pred HHHHHhCCCeeEEEEEcCCCCCHHHH
Confidence 444443 2 5889999999999974
No 466
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=82.71 E-value=8.8 Score=41.22 Aligned_cols=149 Identities=13% Similarity=0.143 Sum_probs=71.9
Q ss_pred HHHHHHHHH-HcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccc--cCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCc
Q 003910 251 IQCQALPII-LSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQ--KEEGPIGVICAPTRELAHQIYLETKKFAKSHGI 327 (787)
Q Consensus 251 ~Q~~ai~~i-l~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~--~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i 327 (787)
.|-+.|+-. .++-.+|+.++.|.|||++.+.-.+.......-+. -.+..++|+|.-- .--..+.+.++..+..+++
T Consensus 77 ~~P~lId~~fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslE-l~re~~L~Rl~~v~a~mgL 155 (402)
T COG3598 77 NSPQLIDEFFRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLE-LYREDILERLEPVRARMGL 155 (402)
T ss_pred cChhhhhHHhhcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEec-cChHHHHHHHHHHHHHcCC
Confidence 445556544 45667788899999999875544443332221111 1223345555321 1122344556666655544
Q ss_pred e-----EEEEE--CCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhc--CCChHHHHHHhh
Q 003910 328 R-----VSAVY--GGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFD--LGFEPQIRSIVG 398 (787)
Q Consensus 328 ~-----v~~~~--gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~--~~f~~~i~~il~ 398 (787)
. .+.++ .|. ..+.++ ..| .|.+.+.... .-.+.++||||=.=.++. .....++...++
T Consensus 156 sPadvrn~dltd~~Ga---------a~~~d~--l~p-kl~rRfek~~-~Q~rp~~vViDp~v~f~~G~s~s~vqv~~fi~ 222 (402)
T COG3598 156 SPADVRNMDLTDVSGA---------ADESDV--LSP-KLYRRFEKIL-EQKRPDFVVIDPFVAFYEGKSISDVQVKEFIK 222 (402)
T ss_pred ChHhhhheeccccccC---------CCcccc--ccH-HHHHHHHHHH-HHhCCCeEEEcchhhhcCCccchhHHHHHHHH
Confidence 2 22220 000 001222 344 4444333211 123578899997665442 223344444443
Q ss_pred hcC-----CCceEEEEeccC
Q 003910 399 QIR-----PDRQTLLFSATM 413 (787)
Q Consensus 399 ~~~-----~~~q~ll~SAT~ 413 (787)
.++ ..+.+|+++.|.
T Consensus 223 ~~rkla~~l~caIiy~hHts 242 (402)
T COG3598 223 KTRKLARNLECAIIYIHHTS 242 (402)
T ss_pred HHHHHHHhcCCeEEEEeccc
Confidence 332 356778887775
No 467
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=82.70 E-value=3.6 Score=45.79 Aligned_cols=26 Identities=23% Similarity=0.264 Sum_probs=19.5
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHH
Q 003910 261 SGRDIIGIAKTGSGKTAAFVLPMIVHI 287 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla~llp~l~~l 287 (787)
.|+.++|.++.|+|||.. +-.+.+.+
T Consensus 168 kGQR~lIvgppGvGKTTL-aK~Ian~I 193 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVL-LQNIANSI 193 (416)
T ss_pred cCceEEEeCCCCCChhHH-HHHHHHHH
Confidence 788999999999999964 33344444
No 468
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=82.41 E-value=8.6 Score=39.36 Aligned_cols=51 Identities=24% Similarity=0.275 Sum_probs=31.8
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003910 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (787)
Q Consensus 262 grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~ 321 (787)
|.-+++.+++|+|||.. .+-++...+. .+..++++.- .+-..|+.+.+..+
T Consensus 16 g~~~li~G~~G~GKt~~-~~~~~~~~~~-------~g~~~~y~s~-e~~~~~l~~~~~~~ 66 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTF-SLQFLYQGLK-------NGEKAMYISL-EEREERILGYAKSK 66 (224)
T ss_pred CeEEEEECCCCCCHHHH-HHHHHHHHHh-------CCCeEEEEEC-CCCHHHHHHHHHHc
Confidence 46788999999999974 3333333222 2445666654 45566776666655
No 469
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=82.36 E-value=2.4 Score=46.05 Aligned_cols=58 Identities=28% Similarity=0.197 Sum_probs=38.1
Q ss_pred CCCCcHHHHHHHHH-HHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHH
Q 003910 245 YEKPTSIQCQALPI-ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELA 311 (787)
Q Consensus 245 ~~~ptp~Q~~ai~~-il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa 311 (787)
+..+++.|..-+.. +..++++++|++||||||.. +.+++..+- ..-+++.+=-|.++.
T Consensus 125 ~gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~~Ip--------~~~rivtIEdt~E~~ 183 (312)
T COG0630 125 YGTISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLDFIP--------PEERIVTIEDTPELK 183 (312)
T ss_pred cCCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHHhCC--------chhcEEEEecccccc
Confidence 35566777665554 44678999999999999974 666665551 123356665555553
No 470
>PF12846 AAA_10: AAA-like domain
Probab=82.35 E-value=3.7 Score=43.67 Aligned_cols=42 Identities=29% Similarity=0.482 Sum_probs=29.7
Q ss_pred CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHH
Q 003910 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAH 312 (787)
Q Consensus 263 rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~ 312 (787)
++++++|+||+|||.... .++..++. .++.++|+=|..+...
T Consensus 2 ~h~~i~G~tGsGKT~~~~-~l~~~~~~-------~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLK-NLLEQLIR-------RGPRVVIFDPKGDYSP 43 (304)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHH-------cCCCEEEEcCCchHHH
Confidence 689999999999997644 55555543 2566788877655544
No 471
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=82.30 E-value=4.7 Score=47.95 Aligned_cols=79 Identities=19% Similarity=0.246 Sum_probs=62.4
Q ss_pred EEecCCCcchHHH-HHHhcCCcCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEE
Q 003910 447 VHVIPSDAEKLPW-LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLI 525 (787)
Q Consensus 447 ~~~~~~~~~k~~~-L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLV 525 (787)
+...+....|-.. ++-.+ ...+.+||.+|++.-+......|...++.+..+|+.++..++..++.....|.++||+
T Consensus 32 lv~~PTG~GKTl~y~lpal---~~~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~ 108 (591)
T TIGR01389 32 LVVMPTGGGKSLCYQVPAL---LLKGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELKLLY 108 (591)
T ss_pred EEEcCCCccHhHHHHHHHH---HcCCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEE
Confidence 3445555555432 22222 2357899999999998888889999999999999999999999999999999999999
Q ss_pred Eeh
Q 003910 526 ATD 528 (787)
Q Consensus 526 aT~ 528 (787)
.|.
T Consensus 109 ~tp 111 (591)
T TIGR01389 109 VAP 111 (591)
T ss_pred ECh
Confidence 883
No 472
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=82.16 E-value=3.1 Score=45.79 Aligned_cols=64 Identities=19% Similarity=0.199 Sum_probs=39.6
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHHH-cCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHH
Q 003910 237 MHAISKQGYEKPTSIQCQALPIIL-SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELA 311 (787)
Q Consensus 237 ~~~l~~~g~~~ptp~Q~~ai~~il-~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa 311 (787)
++.|.+.|+ +++.+.+.+..+. .+.+++++++||+|||.. +-.++..+ . ...+++++--+.||.
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTl-l~al~~~i-~-------~~~riv~iEd~~El~ 218 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTL-LSALLALV-A-------PDERIVLVEDAAELR 218 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH-HHHHHccC-C-------CCCcEEEECCcceec
Confidence 344444444 4567777776655 456999999999999974 33333332 1 123466676776763
No 473
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=81.90 E-value=8 Score=36.72 Aligned_cols=40 Identities=18% Similarity=0.288 Sum_probs=27.6
Q ss_pred ccceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEecc
Q 003910 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSAT 412 (787)
Q Consensus 370 l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT 412 (787)
+.+..++|+||.-.-+|......+..++..+. . ++++++-
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~--~-til~~th 125 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEYP--G-TVILVSH 125 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHcC--C-EEEEEEC
Confidence 45678899999998777766667777776652 3 4444443
No 474
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=81.77 E-value=4 Score=46.88 Aligned_cols=70 Identities=19% Similarity=0.355 Sum_probs=53.6
Q ss_pred CCEEEEecccccHHHHHHHHHHc-----CCceeeccCCCCHHHHHHHHHHhhcCCccEEEEe-----hhhh-ccCCCCCc
Q 003910 471 GDVLVFASKKTTVDEIESQLAQK-----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIAT-----DVAA-RGLDIKSI 539 (787)
Q Consensus 471 ~kvLVF~~s~~~a~~l~~~L~~~-----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT-----~v~~-rGlDip~v 539 (787)
.++||.|++++-+..+++.++.. ++.+..++|+.+...+...+. ...+|+|+| +.+. ..+++.++
T Consensus 73 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~----~~~~IvV~Tp~rl~~~l~~~~~~l~~l 148 (460)
T PRK11776 73 VQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE----HGAHIIVGTPGRILDHLRKGTLDLDAL 148 (460)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc----CCCCEEEEChHHHHHHHHcCCccHHHC
Confidence 37999999999999988877653 578899999998866544443 567899999 3333 35788888
Q ss_pred cEEEE
Q 003910 540 KSVVN 544 (787)
Q Consensus 540 ~~VI~ 544 (787)
.+||.
T Consensus 149 ~~lVi 153 (460)
T PRK11776 149 NTLVL 153 (460)
T ss_pred CEEEE
Confidence 88885
No 475
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=81.75 E-value=2.1 Score=50.56 Aligned_cols=38 Identities=18% Similarity=0.158 Sum_probs=25.8
Q ss_pred cHHHHHHHHHHHcC--CCEEEEccCCCchhHHHHHHHHHHH
Q 003910 249 TSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHI 287 (787)
Q Consensus 249 tp~Q~~ai~~il~g--rdvii~a~TGsGKTla~llp~l~~l 287 (787)
.+.|.+.|..++.. --+|+++|||||||.+ +..++.++
T Consensus 301 ~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTt-l~a~l~~~ 340 (564)
T TIGR02538 301 EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVS-LYTALNIL 340 (564)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH-HHHHHHhh
Confidence 34555556555543 3578999999999976 45566665
No 476
>PRK08006 replicative DNA helicase; Provisional
Probab=81.74 E-value=18 Score=41.78 Aligned_cols=114 Identities=15% Similarity=0.127 Sum_probs=56.1
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHH
Q 003910 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ 341 (787)
Q Consensus 262 grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~ 341 (787)
|.=+|+.|.+|.|||. |++-+..++... .+..++|+.. -.-..|+...+-... .++...-+..|.-....
T Consensus 224 G~LiiIaarPgmGKTa-falnia~~~a~~------~g~~V~~fSl-EM~~~ql~~Rlla~~--~~v~~~~i~~~~l~~~e 293 (471)
T PRK08006 224 SDLIIVAARPSMGKTT-FAMNLCENAAML------QDKPVLIFSL-EMPGEQIMMRMLASL--SRVDQTRIRTGQLDDED 293 (471)
T ss_pred CcEEEEEeCCCCCHHH-HHHHHHHHHHHh------cCCeEEEEec-cCCHHHHHHHHHHHh--cCCCHHHhhcCCCCHHH
Confidence 3457789999999997 455555444311 1334555533 233344443333221 23332222222222223
Q ss_pred HHH-------HhcCCcEEEe-----CHHHHHHHHHhccccccceeEEEEechhhhh
Q 003910 342 FKE-------LKAGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (787)
Q Consensus 342 ~~~-------l~~~~dIIV~-----Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~ 385 (787)
+.. +.....+.|- |+..+...+.+-......+++||||=.|.|.
T Consensus 294 ~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 349 (471)
T PRK08006 294 WARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMR 349 (471)
T ss_pred HHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHcc
Confidence 222 2233455553 5555554443221112257899999999764
No 477
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=81.66 E-value=3.3 Score=41.26 Aligned_cols=33 Identities=27% Similarity=0.322 Sum_probs=25.5
Q ss_pred CCCcHHHHHHHHHHH-cCCCEEEEccCCCchhHH
Q 003910 246 EKPTSIQCQALPIIL-SGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 246 ~~ptp~Q~~ai~~il-~grdvii~a~TGsGKTla 278 (787)
...++-|.+.+...+ .+..++++++||+|||..
T Consensus 8 g~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 8 GTFSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred CCCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 345667777776655 568899999999999975
No 478
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=81.64 E-value=2.6 Score=45.79 Aligned_cols=43 Identities=26% Similarity=0.251 Sum_probs=27.2
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHH
Q 003910 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELA 311 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa 311 (787)
.|+-+++++++|+|||.. ++.++..... .+..++++-.-..+.
T Consensus 54 ~G~iteI~G~~GsGKTtL-aL~~~~~~~~-------~g~~v~yId~E~~~~ 96 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTL-ALHAIAEAQK-------AGGTAAFIDAEHALD 96 (321)
T ss_pred CCeEEEEECCCCCCHHHH-HHHHHHHHHH-------cCCcEEEEcccchhH
Confidence 346788999999999975 4555554432 245567665443333
No 479
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=81.60 E-value=2.4 Score=49.63 Aligned_cols=41 Identities=17% Similarity=0.300 Sum_probs=29.1
Q ss_pred ccceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEe
Q 003910 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (787)
Q Consensus 370 l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~S 410 (787)
+.+-.++|+||+-.-+|...+..+.+.+....+++-+|+.|
T Consensus 486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiIt 526 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVIT 526 (529)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 56678899999987777666777777776665555555554
No 480
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=81.59 E-value=18 Score=43.44 Aligned_cols=117 Identities=15% Similarity=0.317 Sum_probs=73.7
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHH---HHHHhc-CCcEEEeCHHHHHHHHHhcccccc
Q 003910 296 EEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ---FKELKA-GCEIVIATPGRLIDMLKMKALTMS 371 (787)
Q Consensus 296 ~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~---~~~l~~-~~dIIV~Tp~~L~~~l~~~~~~l~ 371 (787)
..+.++||+|+|+..+..+.+.+... ++.+.+++++....+. +..+.. ..+|+||| +.+ ...+.+.
T Consensus 440 ~~g~~vLIf~~tk~~ae~L~~~L~~~----gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t-----~~L-~rGfDiP 509 (655)
T TIGR00631 440 ARNERVLVTTLTKKMAEDLTDYLKEL----GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGI-----NLL-REGLDLP 509 (655)
T ss_pred cCCCEEEEEECCHHHHHHHHHHHhhh----ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEc-----Chh-cCCeeeC
Confidence 34678999999999998887777765 7888888887665433 233333 47899999 333 3456788
Q ss_pred ceeEEEEechhhhhcCCChHHHHHHhhhcC--CCceEEEEeccCcHHHHHHHH
Q 003910 372 RVTYLVLDEADRMFDLGFEPQIRSIVGQIR--PDRQTLLFSATMPRKVEKLAR 422 (787)
Q Consensus 372 ~i~~lViDEah~m~~~~f~~~i~~il~~~~--~~~q~ll~SAT~~~~v~~l~~ 422 (787)
.+++||+-+++...-......+.+.+.+.. .....+++--.....+...+.
T Consensus 510 ~v~lVvi~DadifG~p~~~~~~iqriGRagR~~~G~vi~~~~~~~~~~~~ai~ 562 (655)
T TIGR00631 510 EVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVIMYADKITDSMQKAIE 562 (655)
T ss_pred CCcEEEEeCcccccCCCCHHHHHHHhcCCCCCCCCEEEEEEcCCCHHHHHHHH
Confidence 999999888876332222333334443321 233456665566555444433
No 481
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=81.54 E-value=15 Score=45.17 Aligned_cols=17 Identities=29% Similarity=0.395 Sum_probs=14.6
Q ss_pred CCCEEEEccCCCchhHH
Q 003910 262 GRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 262 grdvii~a~TGsGKTla 278 (787)
+..+++++|+|+|||..
T Consensus 347 ~~~lll~GppG~GKT~l 363 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSL 363 (775)
T ss_pred CceEEEECCCCCCHHHH
Confidence 45699999999999964
No 482
>PRK05636 replicative DNA helicase; Provisional
Probab=81.49 E-value=13 Score=43.29 Aligned_cols=112 Identities=21% Similarity=0.214 Sum_probs=52.0
Q ss_pred CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHH
Q 003910 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF 342 (787)
Q Consensus 263 rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~ 342 (787)
.=+|+.|.+|+|||.. .+-++.++... .+..++|+ ....-..|+...+-. ...++....+..|.-....+
T Consensus 266 ~Liiiaarpg~GKT~~-al~~a~~~a~~------~g~~v~~f-SlEMs~~ql~~R~ls--~~s~v~~~~i~~g~l~~~e~ 335 (505)
T PRK05636 266 QMIIVAARPGVGKSTL-ALDFMRSASIK------HNKASVIF-SLEMSKSEIVMRLLS--AEAEVRLSDMRGGKMDEDAW 335 (505)
T ss_pred ceEEEEeCCCCCHHHH-HHHHHHHHHHh------CCCeEEEE-EeeCCHHHHHHHHHH--HhcCCCHHHHhcCCCCHHHH
Confidence 3467899999999974 44444443211 13345555 222223333322221 11233222233333222333
Q ss_pred HHHh------cCCcEEEe-----CHHHHHHHHHhccccccceeEEEEechhhhh
Q 003910 343 KELK------AGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (787)
Q Consensus 343 ~~l~------~~~dIIV~-----Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~ 385 (787)
..+. ....|.|. |...+...+.+-.. -..+++||||=.|.|.
T Consensus 336 ~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~-~~~~~lvvIDYLql~~ 388 (505)
T PRK05636 336 EKLVQRLGKIAQAPIFIDDSANLTMMEIRSKARRLKQ-KHDLKLIVVDYLQLMS 388 (505)
T ss_pred HHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhcC
Confidence 2221 23445553 33344433332111 1357899999999875
No 483
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=81.46 E-value=0.91 Score=53.77 Aligned_cols=11 Identities=27% Similarity=0.362 Sum_probs=6.2
Q ss_pred ccccCCCCCCC
Q 003910 29 RLYVPPSSRYS 39 (787)
Q Consensus 29 ~~~~~~~~r~~ 39 (787)
+.|-+++.|-.
T Consensus 1393 r~yEIGR~r~~ 1403 (1516)
T KOG1832|consen 1393 RMYEIGRRRPT 1403 (1516)
T ss_pred hhhhhcccCCC
Confidence 44556666554
No 484
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=81.42 E-value=11 Score=43.11 Aligned_cols=37 Identities=14% Similarity=0.139 Sum_probs=21.7
Q ss_pred cceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEE
Q 003910 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLL 408 (787)
Q Consensus 371 ~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll 408 (787)
....+|||||+|.|.... ...+.+.+...++...+|+
T Consensus 120 ~~~kvvIIdead~lt~~~-~n~LLk~lEep~~~~~~Il 156 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEA-FNSLLKTLEEPPQHVKFFL 156 (451)
T ss_pred CCCEEEEEecHHhhCHHH-HHHHHHHhhcCCCCceEEE
Confidence 467899999999875422 2234445555344333443
No 485
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.24 E-value=18 Score=43.23 Aligned_cols=45 Identities=9% Similarity=0.137 Sum_probs=26.5
Q ss_pred ccceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEeccCcHH
Q 003910 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRK 416 (787)
Q Consensus 370 l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~ 416 (787)
.....++||||+|.|.... ...+.+++...+... +++|.+|-+..
T Consensus 119 ~~~~KVvIIdea~~Ls~~a-~naLLK~LEepp~~t-ifIL~tt~~~k 163 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQAA-FNAFLKTLEEPPSYA-IFILATTEKHK 163 (614)
T ss_pred cCCcEEEEEECcccCCHHH-HHHHHHHHhCCCCCe-EEEEEeCCchh
Confidence 4578899999999975432 224455555544333 45555554333
No 486
>PRK14701 reverse gyrase; Provisional
Probab=81.22 E-value=3.8 Score=53.97 Aligned_cols=59 Identities=12% Similarity=0.290 Sum_probs=52.4
Q ss_pred CCCEEEEecccccHHHHHHHHHHc------CCceeeccCCCCHHHHHHHHHHhhcCCccEEEEeh
Q 003910 470 DGDVLVFASKKTTVDEIESQLAQK------GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD 528 (787)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~------g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~ 528 (787)
..++||.+|++.-+.++.+.|... ++.+..+||+++..++..+++.+.+|..+|||+|.
T Consensus 122 g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TP 186 (1638)
T PRK14701 122 GKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTA 186 (1638)
T ss_pred CCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECC
Confidence 448999999999999999888763 46778999999999999999999999999999995
No 487
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=81.20 E-value=9.3 Score=41.80 Aligned_cols=54 Identities=17% Similarity=0.155 Sum_probs=29.1
Q ss_pred CCccccCCCHHHHHHHHHCCCCCC-cHHHHHHHHHHHcCCCEEEEccCCCchhHH
Q 003910 225 KTFEDCGFSTQLMHAISKQGYEKP-TSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 225 ~sf~~~~l~~~l~~~l~~~g~~~p-tp~Q~~ai~~il~grdvii~a~TGsGKTla 278 (787)
.+|.+.+=-+.+.+.|+..-...+ +|-.-.--..+.--+.+++.+|.|+|||..
T Consensus 89 v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTml 143 (386)
T KOG0737|consen 89 VSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTML 143 (386)
T ss_pred eehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHH
Confidence 467777665666666654311111 111111011111236899999999999975
No 488
>CHL00176 ftsH cell division protein; Validated
Probab=81.18 E-value=8.7 Score=45.95 Aligned_cols=16 Identities=25% Similarity=0.530 Sum_probs=14.5
Q ss_pred CCEEEEccCCCchhHH
Q 003910 263 RDIIGIAKTGSGKTAA 278 (787)
Q Consensus 263 rdvii~a~TGsGKTla 278 (787)
+.+|+.+|+|+|||+.
T Consensus 217 ~gVLL~GPpGTGKT~L 232 (638)
T CHL00176 217 KGVLLVGPPGTGKTLL 232 (638)
T ss_pred ceEEEECCCCCCHHHH
Confidence 5799999999999975
No 489
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=81.11 E-value=6.1 Score=45.45 Aligned_cols=89 Identities=16% Similarity=0.217 Sum_probs=59.3
Q ss_pred CCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHh---c-
Q 003910 272 GSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELK---A- 347 (787)
Q Consensus 272 GsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~---~- 347 (787)
...|-.- +.++|..++ .....++||.|-|+.-|.++...++.. ++.+.+++|..+..+....|. .
T Consensus 322 ~~~K~~~-l~~lL~~~~------~~~~~KvIIFc~tkr~~~~l~~~l~~~----~~~a~~iHGd~sQ~eR~~~L~~FreG 390 (519)
T KOG0331|consen 322 ETAKLRK-LGKLLEDIS------SDSEGKVIIFCETKRTCDELARNLRRK----GWPAVAIHGDKSQSERDWVLKGFREG 390 (519)
T ss_pred HHHHHHH-HHHHHHHHh------ccCCCcEEEEecchhhHHHHHHHHHhc----CcceeeecccccHHHHHHHHHhcccC
Confidence 3445432 455555543 234668999999999999887777765 688999999988766544443 2
Q ss_pred CCcEEEeCHHHHHHHHHhccccccceeEEE
Q 003910 348 GCEIVIATPGRLIDMLKMKALTMSRVTYLV 377 (787)
Q Consensus 348 ~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lV 377 (787)
.+.|+|||. +....+++..+++||
T Consensus 391 ~~~vLVATd------VAaRGLDi~dV~lVI 414 (519)
T KOG0331|consen 391 KSPVLVATD------VAARGLDVPDVDLVI 414 (519)
T ss_pred CcceEEEcc------cccccCCCccccEEE
Confidence 489999993 223445566666555
No 490
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=80.96 E-value=5.2 Score=48.13 Aligned_cols=44 Identities=9% Similarity=0.104 Sum_probs=24.2
Q ss_pred ccceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEeccCcH
Q 003910 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPR 415 (787)
Q Consensus 370 l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~~ 415 (787)
.....++||||||.|.... ...+...+...++.. ++++.+|-+.
T Consensus 116 ~g~~KV~IIDEa~~LT~~A-~NALLKtLEEPP~~t-ifILaTte~~ 159 (725)
T PRK07133 116 QSKYKIYIIDEVHMLSKSA-FNALLKTLEEPPKHV-IFILATTEVH 159 (725)
T ss_pred cCCCEEEEEEChhhCCHHH-HHHHHHHhhcCCCce-EEEEEcCChh
Confidence 3577899999999875432 223344444433333 3444445433
No 491
>PRK06321 replicative DNA helicase; Provisional
Probab=80.83 E-value=12 Score=43.22 Aligned_cols=112 Identities=14% Similarity=0.067 Sum_probs=54.9
Q ss_pred CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHH
Q 003910 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF 342 (787)
Q Consensus 263 rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~ 342 (787)
.=+|+.|.+|.|||. |++-+..++... .+..++++.. ..-..|+...+... ..++...-+..+.-....+
T Consensus 227 ~LiiiaarPgmGKTa-fal~ia~~~a~~------~g~~v~~fSL-EMs~~ql~~Rlla~--~s~v~~~~i~~~~l~~~e~ 296 (472)
T PRK06321 227 NLMILAARPAMGKTA-LALNIAENFCFQ------NRLPVGIFSL-EMTVDQLIHRIICS--RSEVESKKISVGDLSGRDF 296 (472)
T ss_pred cEEEEEeCCCCChHH-HHHHHHHHHHHh------cCCeEEEEec-cCCHHHHHHHHHHh--hcCCCHHHhhcCCCCHHHH
Confidence 346779999999997 455555554321 1333555432 23344444433222 1233222222222222223
Q ss_pred HHH------hcCCcEEEe-----CHHHHHHHHHhccccccceeEEEEechhhhh
Q 003910 343 KEL------KAGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (787)
Q Consensus 343 ~~l------~~~~dIIV~-----Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~ 385 (787)
..+ .....+.|- |...+...+.+-.. -..+++||||=.+.|.
T Consensus 297 ~~~~~a~~~l~~~~~~idd~~~~ti~~i~~~~r~~~~-~~~~~lvvIDyLql~~ 349 (472)
T PRK06321 297 QRIVSVVNEMQEHTLLIDDQPGLKITDLRARARRMKE-SYDIQFLIIDYLQLLS 349 (472)
T ss_pred HHHHHHHHHHHcCCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHHcC
Confidence 221 123456664 44555544433211 1347899999999875
No 492
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=80.72 E-value=1.7 Score=52.05 Aligned_cols=56 Identities=20% Similarity=0.162 Sum_probs=39.7
Q ss_pred CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEE
Q 003910 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAV 332 (787)
Q Consensus 263 rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~ 332 (787)
++++++|+||||||..+++|-|... ..-+||+=|.-|+........++ .|.+|.++
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~----------~gS~VV~DpKGE~~~~Ta~~R~~----~G~~V~~F 195 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTF----------KGSVIALDVKGELFELTSRARKA----SGDAVFKF 195 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcC----------CCCEEEEeCCchHHHHHHHHHHh----CCCEEEEe
Confidence 5899999999999999999986643 12378888888887655444333 35555443
No 493
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=80.65 E-value=5.3 Score=41.61 Aligned_cols=102 Identities=12% Similarity=0.249 Sum_probs=66.3
Q ss_pred CCceeeccCCCCHHHHHHHHHHhhcCC----ccEEEEehhhhccCCCCCccEEEEecCCCCHHHHHHHhhccC-CCCCCC
Q 003910 494 GFKAAALHGDKDQASRMEILQKFKSGV----YHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTG-RAGDKD 568 (787)
Q Consensus 494 g~~v~~lhg~~~~~eR~~~l~~F~~G~----~~VLVaT~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~g-R~G~~~ 568 (787)
++.+..++++.+... -.|..+. ..|+|.=+.++|||.++++.+..+...+.+.+++.||.=--| |.| -.
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~g-Y~ 183 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPG-YE 183 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCcc-cc
Confidence 467777776554432 3344433 788999999999999999999999999998888888753222 444 34
Q ss_pred cEEEEEEccccHHHHHHHHHHHHHcCCCccHHHHHHH
Q 003910 569 GTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLA 605 (787)
Q Consensus 569 G~~i~l~~~~d~~~~~~l~~~l~~~~~~vp~~l~~~a 605 (787)
..|-+++++.-...+..+... ...+-.++..++
T Consensus 184 dl~Ri~~~~~l~~~f~~i~~~----~e~lr~~i~~~~ 216 (239)
T PF10593_consen 184 DLCRIYMPEELYDWFRHIAEA----EEELREEIKEMA 216 (239)
T ss_pred cceEEecCHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 677777766655555444433 334444444443
No 494
>PRK07413 hypothetical protein; Validated
Probab=80.44 E-value=7.6 Score=43.05 Aligned_cols=53 Identities=19% Similarity=0.186 Sum_probs=39.7
Q ss_pred cceeEEEEechhhhhcCCChH--HHHHHhhhcCCCceEEEEecc-CcHHHHHHHHH
Q 003910 371 SRVTYLVLDEADRMFDLGFEP--QIRSIVGQIRPDRQTLLFSAT-MPRKVEKLARE 423 (787)
Q Consensus 371 ~~i~~lViDEah~m~~~~f~~--~i~~il~~~~~~~q~ll~SAT-~~~~v~~l~~~ 423 (787)
..+++|||||+-..++.++.+ .+..++...++...+|+..-. .|+.+.+++..
T Consensus 304 g~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVLTGR~~ap~~lie~ADl 359 (382)
T PRK07413 304 GLYKTIILDELNPTVDLELLPVEPIVQTLLRKPRDTEVIITGRCKNQPAYFDLASV 359 (382)
T ss_pred CCCCEEEEechHHHHHCCCccHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHhCch
Confidence 568899999999988888654 677778776666666666665 78887766543
No 495
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=80.32 E-value=7.1 Score=39.28 Aligned_cols=54 Identities=22% Similarity=0.424 Sum_probs=42.8
Q ss_pred ccceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEeccCcHHHHHHHHH
Q 003910 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLARE 423 (787)
Q Consensus 370 l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~ 423 (787)
..+.+++|+||.-.=+|.-....+..++.+++..-++++||.-.-.+++.++..
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDr 202 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDR 202 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhhe
Confidence 456889999999987777677788888888888778888888876676666543
No 496
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=80.29 E-value=8.3 Score=40.78 Aligned_cols=16 Identities=25% Similarity=0.393 Sum_probs=13.9
Q ss_pred CCEEEEccCCCchhHH
Q 003910 263 RDIIGIAKTGSGKTAA 278 (787)
Q Consensus 263 rdvii~a~TGsGKTla 278 (787)
.++++.+|+|.|||..
T Consensus 53 DHvLl~GPPGlGKTTL 68 (332)
T COG2255 53 DHVLLFGPPGLGKTTL 68 (332)
T ss_pred CeEEeeCCCCCcHHHH
Confidence 3799999999999963
No 497
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=79.99 E-value=6.9 Score=44.45 Aligned_cols=70 Identities=20% Similarity=0.330 Sum_probs=51.7
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHH---HHhc-CCcEEEeCHHHHHHHHHhccccccce
Q 003910 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK---ELKA-GCEIVIATPGRLIDMLKMKALTMSRV 373 (787)
Q Consensus 298 ~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~---~l~~-~~dIIV~Tp~~L~~~l~~~~~~l~~i 373 (787)
.|.++|.+.|..-|.-+++.+.+. +++++.++||.+..+... .+.. ..+|+|||. .. -..+.+.++
T Consensus 517 ~ppiIIFvN~kk~~d~lAk~LeK~----g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTD-----vA-gRGIDIpnV 586 (673)
T KOG0333|consen 517 DPPIIIFVNTKKGADALAKILEKA----GYKVTTLHGGKSQEQRENALADFREGTGDILVATD-----VA-GRGIDIPNV 586 (673)
T ss_pred CCCEEEEEechhhHHHHHHHHhhc----cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEec-----cc-ccCCCCCcc
Confidence 567899999999998887777776 899999999988765433 3344 489999993 22 334567777
Q ss_pred eEEE
Q 003910 374 TYLV 377 (787)
Q Consensus 374 ~~lV 377 (787)
++||
T Consensus 587 SlVi 590 (673)
T KOG0333|consen 587 SLVI 590 (673)
T ss_pred ceee
Confidence 7765
No 498
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=79.95 E-value=8.2 Score=43.95 Aligned_cols=70 Identities=20% Similarity=0.310 Sum_probs=51.3
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHH---Hhc-CCcEEEeCHHHHHHHHHhccccccce
Q 003910 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE---LKA-GCEIVIATPGRLIDMLKMKALTMSRV 373 (787)
Q Consensus 298 ~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~---l~~-~~dIIV~Tp~~L~~~l~~~~~~l~~i 373 (787)
..++||.|++++.|..++..+... ++.+..++|+.+..+.... +.. ..+||||| +.+ ...+++..+
T Consensus 245 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaT-----d~~-~~GiDip~v 314 (434)
T PRK11192 245 VTRSIVFVRTRERVHELAGWLRKA----GINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVAT-----DVA-ARGIDIDDV 314 (434)
T ss_pred CCeEEEEeCChHHHHHHHHHHHhC----CCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEc-----ccc-ccCccCCCC
Confidence 467899999999999888877763 7899999998876554333 233 48999999 333 234567777
Q ss_pred eEEE
Q 003910 374 TYLV 377 (787)
Q Consensus 374 ~~lV 377 (787)
.+||
T Consensus 315 ~~VI 318 (434)
T PRK11192 315 SHVI 318 (434)
T ss_pred CEEE
Confidence 7776
No 499
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=79.94 E-value=41 Score=33.78 Aligned_cols=53 Identities=13% Similarity=0.206 Sum_probs=35.3
Q ss_pred eeEEEEechhhhhcCCCh-HHHHHHhhhcCCCceEEEEeccCcHHHHHHHHHHh
Q 003910 373 VTYLVLDEADRMFDLGFE-PQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREIL 425 (787)
Q Consensus 373 i~~lViDEah~m~~~~f~-~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l 425 (787)
-+++||--.|..-..++. ..+..-...++|+++++++|+.-...+.+++++..
T Consensus 144 aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~ 197 (202)
T COG0378 144 ADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIE 197 (202)
T ss_pred eeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHH
Confidence 345555555543333432 34556677789999999999998878887777654
No 500
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=79.77 E-value=6 Score=39.98 Aligned_cols=38 Identities=24% Similarity=0.200 Sum_probs=23.7
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcC
Q 003910 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAP 306 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~P 306 (787)
.|+-+.+.+++|+|||... +-++.+... .+..++++.-
T Consensus 11 ~g~i~~i~G~~GsGKT~l~-~~~~~~~~~-------~g~~v~yi~~ 48 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNIC-MILAVNAAR-------QGKKVVYIDT 48 (209)
T ss_pred CCeEEEEECCCCCCHHHHH-HHHHHHHHh-------CCCeEEEEEC
Confidence 3456889999999999754 333333322 2445666544
Done!