Query 003910
Match_columns 787
No_of_seqs 541 out of 3620
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 08:02:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003910.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003910hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 2E-66 7E-71 587.7 44.5 390 210-603 41-433 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 1.9E-59 6.4E-64 526.6 47.1 393 213-607 3-412 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 1.5E-56 5.2E-61 502.3 38.3 372 220-598 32-403 (410)
4 3eiq_A Eukaryotic initiation f 100.0 1.8E-55 6.3E-60 493.4 35.0 380 218-604 33-413 (414)
5 1s2m_A Putative ATP-dependent 100.0 3E-53 1E-57 473.8 39.5 371 221-600 17-387 (400)
6 1xti_A Probable ATP-dependent 100.0 1.3E-52 4.4E-57 466.7 38.2 368 225-600 8-380 (391)
7 1fuu_A Yeast initiation factor 100.0 3.4E-54 1.2E-58 479.6 24.8 376 219-602 15-390 (394)
8 3pey_A ATP-dependent RNA helic 100.0 4.8E-52 1.6E-56 461.8 40.7 356 222-588 2-367 (395)
9 3fht_A ATP-dependent RNA helic 100.0 3.5E-52 1.2E-56 466.2 38.8 369 221-599 21-401 (412)
10 3sqw_A ATP-dependent RNA helic 100.0 2.7E-52 9.1E-57 489.2 39.1 366 223-590 15-410 (579)
11 1hv8_A Putative ATP-dependent 100.0 2.4E-51 8.3E-56 451.5 42.6 355 224-593 5-360 (367)
12 3i5x_A ATP-dependent RNA helic 100.0 4.2E-52 1.4E-56 486.0 36.9 364 225-590 68-461 (563)
13 3fmp_B ATP-dependent RNA helic 100.0 3E-53 1E-57 486.0 22.2 366 223-598 90-467 (479)
14 2z0m_A 337AA long hypothetical 100.0 2.8E-49 9.5E-54 430.2 39.6 335 232-591 1-335 (337)
15 2v1x_A ATP-dependent DNA helic 100.0 8.8E-48 3E-52 448.9 36.3 348 223-587 17-383 (591)
16 3fho_A ATP-dependent RNA helic 100.0 1.1E-49 3.7E-54 459.4 19.7 371 218-599 112-492 (508)
17 3oiy_A Reverse gyrase helicase 100.0 1.8E-47 6.2E-52 429.7 29.0 327 236-591 10-376 (414)
18 1oyw_A RECQ helicase, ATP-depe 100.0 5.1E-46 1.7E-50 429.4 35.1 342 224-588 1-353 (523)
19 1tf5_A Preprotein translocase 100.0 9E-46 3.1E-50 432.9 25.4 373 180-580 20-547 (844)
20 3l9o_A ATP-dependent RNA helic 100.0 4.3E-45 1.5E-49 451.8 27.7 331 226-578 163-597 (1108)
21 4a2p_A RIG-I, retinoic acid in 100.0 7.5E-45 2.6E-49 423.0 24.7 330 245-580 5-510 (556)
22 3tbk_A RIG-I helicase domain; 100.0 4.9E-44 1.7E-48 415.6 25.9 332 246-584 3-513 (555)
23 2va8_A SSO2462, SKI2-type heli 100.0 5.2E-43 1.8E-47 420.4 34.4 339 224-580 7-410 (715)
24 2ykg_A Probable ATP-dependent 100.0 4.2E-44 1.4E-48 428.8 22.6 341 238-584 4-522 (696)
25 2zj8_A DNA helicase, putative 100.0 2.6E-43 9E-48 423.1 28.8 335 226-580 2-389 (720)
26 4a2q_A RIG-I, retinoic acid in 100.0 7.9E-43 2.7E-47 423.2 30.5 332 243-580 244-751 (797)
27 2p6r_A Afuhel308 helicase; pro 100.0 2E-43 6.8E-48 422.9 22.9 334 226-580 2-390 (702)
28 4ddu_A Reverse gyrase; topoiso 100.0 1.5E-42 5.1E-47 429.0 31.0 320 243-592 75-504 (1104)
29 2fsf_A Preprotein translocase 100.0 2.3E-43 7.9E-48 411.3 21.3 364 193-580 24-585 (853)
30 1wp9_A ATP-dependent RNA helic 100.0 7.2E-42 2.5E-46 388.9 31.0 323 247-580 9-477 (494)
31 1gku_B Reverse gyrase, TOP-RG; 100.0 6E-43 2.1E-47 432.7 22.3 324 238-592 48-468 (1054)
32 4a2w_A RIG-I, retinoic acid in 100.0 9.2E-42 3.2E-46 418.7 28.1 332 243-580 244-751 (936)
33 2xgj_A ATP-dependent RNA helic 100.0 9.7E-41 3.3E-45 409.6 36.9 317 244-584 84-506 (1010)
34 1nkt_A Preprotein translocase 100.0 9.4E-42 3.2E-46 397.9 25.4 366 193-582 58-621 (922)
35 1gm5_A RECG; helicase, replica 100.0 1.2E-41 4.2E-46 405.6 23.9 345 235-606 357-724 (780)
36 4gl2_A Interferon-induced heli 100.0 4.5E-42 1.5E-46 411.4 17.9 325 246-577 6-517 (699)
37 3fe2_A Probable ATP-dependent 100.0 1.4E-39 4.7E-44 338.8 29.4 239 198-436 2-240 (242)
38 2eyq_A TRCF, transcription-rep 100.0 6.1E-39 2.1E-43 399.2 38.8 336 230-591 586-937 (1151)
39 4a4z_A Antiviral helicase SKI2 100.0 1.7E-39 5.6E-44 398.7 29.0 308 247-576 39-490 (997)
40 2whx_A Serine protease/ntpase/ 100.0 5.2E-41 1.8E-45 393.1 8.2 322 230-597 155-500 (618)
41 4f92_B U5 small nuclear ribonu 100.0 4.6E-38 1.6E-42 401.7 34.7 344 232-586 911-1316(1724)
42 2oca_A DAR protein, ATP-depend 100.0 1.6E-39 5.5E-44 375.0 17.2 311 246-575 112-452 (510)
43 4f92_B U5 small nuclear ribonu 100.0 1.3E-37 4.5E-42 397.6 33.1 337 244-586 76-481 (1724)
44 2jlq_A Serine protease subunit 100.0 5.7E-39 1.9E-43 364.4 14.8 288 244-577 1-310 (451)
45 2fwr_A DNA repair protein RAD2 100.0 4.8E-38 1.6E-42 359.2 17.7 295 246-578 92-454 (472)
46 1yks_A Genome polyprotein [con 100.0 8.1E-39 2.8E-43 361.7 7.6 286 258-598 4-322 (440)
47 2xau_A PRE-mRNA-splicing facto 100.0 2.2E-37 7.4E-42 371.1 19.2 339 221-580 68-445 (773)
48 3mwy_W Chromo domain-containin 100.0 2.8E-36 9.7E-41 365.1 27.8 381 176-578 171-684 (800)
49 1wrb_A DJVLGB; RNA helicase, D 100.0 3.4E-36 1.2E-40 315.1 23.6 236 211-446 7-252 (253)
50 3o8b_A HCV NS3 protease/helica 100.0 7.9E-38 2.7E-42 363.4 10.2 279 247-582 217-518 (666)
51 2wv9_A Flavivirin protease NS2 100.0 1.6E-37 5.6E-42 365.7 10.9 306 240-590 203-548 (673)
52 3iuy_A Probable ATP-dependent 100.0 1.9E-35 6.4E-40 304.5 24.2 217 216-433 10-228 (228)
53 2z83_A Helicase/nucleoside tri 100.0 1.2E-36 4.1E-41 345.9 11.8 272 256-578 15-313 (459)
54 3ber_A Probable ATP-dependent 100.0 2.1E-34 7.2E-39 301.0 26.3 209 221-434 39-248 (249)
55 2v6i_A RNA helicase; membrane, 100.0 4.4E-35 1.5E-39 330.3 21.9 270 261-575 1-288 (431)
56 3bor_A Human initiation factor 100.0 1.2E-34 4.1E-39 300.5 23.1 214 216-434 21-235 (237)
57 3dkp_A Probable ATP-dependent 100.0 1E-34 3.5E-39 302.3 22.4 230 203-436 3-243 (245)
58 2pl3_A Probable ATP-dependent 100.0 6.4E-34 2.2E-38 294.6 27.1 227 201-434 6-233 (236)
59 2oxc_A Probable ATP-dependent 100.0 3.8E-34 1.3E-38 295.3 24.1 212 216-433 15-228 (230)
60 3fmo_B ATP-dependent RNA helic 100.0 2.9E-34 1E-38 308.1 23.9 214 213-434 77-298 (300)
61 3h1t_A Type I site-specific re 100.0 4E-35 1.4E-39 344.4 18.0 304 246-565 177-544 (590)
62 1q0u_A Bstdead; DEAD protein, 100.0 2.5E-34 8.6E-39 294.2 21.2 208 223-435 2-213 (219)
63 1z63_A Helicase of the SNF2/RA 100.0 4.8E-34 1.6E-38 328.4 25.4 312 246-578 36-453 (500)
64 1qde_A EIF4A, translation init 100.0 8.9E-34 3E-38 290.9 24.3 212 218-435 7-218 (224)
65 1vec_A ATP-dependent RNA helic 100.0 1.7E-33 5.9E-38 284.8 25.8 202 225-431 3-205 (206)
66 2gxq_A Heat resistant RNA depe 100.0 4.7E-33 1.6E-37 281.6 26.1 204 226-433 2-205 (207)
67 3dmq_A RNA polymerase-associat 100.0 3.9E-34 1.3E-38 351.6 20.8 317 246-575 152-610 (968)
68 1z3i_X Similar to RAD54-like; 100.0 8.3E-32 2.8E-36 318.3 35.7 325 246-578 54-528 (644)
69 1t6n_A Probable ATP-dependent 100.0 6.8E-33 2.3E-37 283.6 22.7 208 220-432 9-219 (220)
70 3ly5_A ATP-dependent RNA helic 100.0 1.1E-32 3.6E-37 290.3 24.7 204 225-429 52-258 (262)
71 3rc3_A ATP-dependent RNA helic 100.0 1E-32 3.6E-37 324.0 23.9 284 255-584 148-450 (677)
72 3jux_A Protein translocase sub 100.0 1.1E-30 3.6E-35 298.8 30.7 317 246-580 74-589 (822)
73 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 1.1E-29 3.6E-34 310.2 25.2 324 234-576 251-707 (1038)
74 2ipc_A Preprotein translocase 100.0 7.1E-27 2.4E-31 271.7 30.5 130 243-385 76-215 (997)
75 2p6n_A ATP-dependent RNA helic 100.0 1.1E-27 3.9E-32 239.6 18.0 180 422-605 9-189 (191)
76 1c4o_A DNA nucleotide excision 99.9 5.6E-27 1.9E-31 277.0 21.9 176 402-588 379-560 (664)
77 2jgn_A DBX, DDX3, ATP-dependen 99.9 1.4E-26 4.8E-31 230.5 16.9 169 437-607 14-182 (185)
78 2d7d_A Uvrabc system protein B 99.9 8.4E-26 2.9E-30 266.8 23.5 175 402-587 385-565 (661)
79 2hjv_A ATP-dependent RNA helic 99.9 2E-24 7E-29 210.3 17.5 150 438-590 5-154 (163)
80 2rb4_A ATP-dependent RNA helic 99.9 9.5E-25 3.3E-29 215.2 15.3 153 439-593 4-162 (175)
81 1fuk_A Eukaryotic initiation f 99.9 7.9E-25 2.7E-29 213.7 11.9 158 441-600 2-159 (165)
82 1t5i_A C_terminal domain of A 99.9 1.3E-24 4.4E-29 213.8 13.2 159 440-601 3-162 (172)
83 3eaq_A Heat resistant RNA depe 99.9 5.2E-23 1.8E-27 209.3 16.6 139 452-592 14-152 (212)
84 3b6e_A Interferon-induced heli 99.9 3.1E-23 1.1E-27 210.4 13.0 166 244-412 30-216 (216)
85 3i32_A Heat resistant RNA depe 99.9 1.7E-22 5.7E-27 215.7 15.1 147 443-592 3-149 (300)
86 2vl7_A XPD; helicase, unknown 99.9 7.2E-22 2.5E-26 228.6 20.4 126 244-385 5-188 (540)
87 2yjt_D ATP-dependent RNA helic 99.8 3.3E-24 1.1E-28 210.3 0.0 148 442-591 3-150 (170)
88 1rif_A DAR protein, DNA helica 99.9 2.1E-21 7.3E-26 206.2 13.1 156 246-418 112-267 (282)
89 3llm_A ATP-dependent RNA helic 99.9 4.3E-21 1.5E-25 198.3 15.0 180 236-429 50-232 (235)
90 3crv_A XPD/RAD3 related DNA he 99.8 9.9E-20 3.4E-24 211.4 27.2 281 247-549 3-473 (551)
91 4a15_A XPD helicase, ATP-depen 99.8 1.5E-17 5E-22 194.9 24.6 313 247-574 3-581 (620)
92 2fz4_A DNA repair protein RAD2 99.8 4.4E-18 1.5E-22 175.9 15.4 139 246-416 92-231 (237)
93 1z5z_A Helicase of the SNF2/RA 99.7 3E-18 1E-22 180.4 10.7 127 452-578 93-224 (271)
94 1w36_D RECD, exodeoxyribonucle 98.8 5.6E-09 1.9E-13 122.1 10.0 146 249-412 151-298 (608)
95 3hgt_A HDA1 complex subunit 3; 98.3 1.5E-06 5E-11 92.0 9.0 124 453-581 107-240 (328)
96 2gk6_A Regulator of nonsense t 98.1 2.3E-05 7.8E-10 91.9 14.6 70 245-321 178-247 (624)
97 4b3f_X DNA-binding protein smu 98.0 7.8E-06 2.7E-10 96.3 9.8 68 246-321 188-256 (646)
98 3e1s_A Exodeoxyribonuclease V, 98.0 1.8E-05 6.1E-10 91.6 10.6 124 246-412 188-315 (574)
99 3upu_A ATP-dependent DNA helic 98.0 2.3E-05 7.8E-10 88.4 11.1 136 242-412 20-164 (459)
100 2xzl_A ATP-dependent helicase 98.0 3.3E-05 1.1E-09 92.7 13.0 70 245-321 358-427 (802)
101 3lfu_A DNA helicase II; SF1 he 97.9 0.00016 5.6E-09 84.9 18.4 72 246-323 8-79 (647)
102 2wjy_A Regulator of nonsense t 97.9 4.8E-05 1.7E-09 91.2 13.5 70 245-321 354-423 (800)
103 2o0j_A Terminase, DNA packagin 97.1 0.0037 1.3E-07 68.2 13.7 145 247-412 163-313 (385)
104 3cpe_A Terminase, DNA packagin 96.9 0.0087 3E-07 69.5 14.7 145 247-412 163-313 (592)
105 1pjr_A PCRA; DNA repair, DNA r 96.2 0.018 6.3E-07 68.4 11.6 110 246-383 10-121 (724)
106 3ec2_A DNA replication protein 96.1 0.014 4.7E-07 56.3 8.3 30 249-278 16-54 (180)
107 1xx6_A Thymidine kinase; NESG, 95.9 0.0097 3.3E-07 58.4 6.4 39 262-308 8-46 (191)
108 2orw_A Thymidine kinase; TMTK, 95.8 0.024 8.3E-07 55.1 8.5 40 261-308 2-41 (184)
109 3vkw_A Replicase large subunit 95.7 0.02 6.9E-07 63.2 8.6 107 264-412 163-269 (446)
110 2j9r_A Thymidine kinase; TK1, 95.7 0.0069 2.4E-07 60.3 4.4 40 262-309 28-67 (214)
111 1uaa_A REP helicase, protein ( 95.6 0.014 4.7E-07 68.8 7.3 71 247-323 2-72 (673)
112 2zpa_A Uncharacterized protein 95.3 0.033 1.1E-06 64.6 8.6 112 247-413 175-288 (671)
113 2b8t_A Thymidine kinase; deoxy 95.2 0.014 4.9E-07 58.6 4.7 91 261-384 11-101 (223)
114 3te6_A Regulatory protein SIR3 95.1 0.12 4E-06 54.8 11.7 26 262-288 45-70 (318)
115 1l8q_A Chromosomal replication 94.9 0.083 2.8E-06 55.9 10.0 17 262-278 37-53 (324)
116 1d2n_A N-ethylmaleimide-sensit 94.8 0.33 1.1E-05 49.8 13.9 16 263-278 65-80 (272)
117 2w58_A DNAI, primosome compone 94.7 0.12 3.9E-06 50.6 9.7 24 263-287 55-78 (202)
118 2p65_A Hypothetical protein PF 94.7 0.18 6.2E-06 47.8 10.9 17 262-278 43-59 (187)
119 1g5t_A COB(I)alamin adenosyltr 94.6 0.27 9.2E-06 48.1 11.9 139 263-421 29-171 (196)
120 2orv_A Thymidine kinase; TP4A 94.6 0.047 1.6E-06 54.8 6.4 40 261-308 18-57 (234)
121 2v1u_A Cell division control p 94.5 0.093 3.2E-06 56.5 9.4 17 262-278 44-60 (387)
122 2kjq_A DNAA-related protein; s 94.5 0.019 6.6E-07 53.8 3.2 18 261-278 35-52 (149)
123 3kl4_A SRP54, signal recogniti 94.4 0.14 4.8E-06 56.6 10.5 132 263-425 98-235 (433)
124 1jbk_A CLPB protein; beta barr 94.0 0.31 1.1E-05 46.1 11.0 24 263-287 44-67 (195)
125 1fnn_A CDC6P, cell division co 93.8 0.14 4.7E-06 55.3 8.9 15 264-278 46-60 (389)
126 3e2i_A Thymidine kinase; Zn-bi 93.8 0.044 1.5E-06 54.5 4.3 41 261-309 27-67 (219)
127 2chg_A Replication factor C sm 93.7 0.44 1.5E-05 46.3 11.7 39 371-410 101-139 (226)
128 2qby_B CDC6 homolog 3, cell di 93.7 0.26 8.8E-06 53.1 10.8 16 263-278 46-61 (384)
129 1gm5_A RECG; helicase, replica 93.6 0.11 3.7E-06 62.0 7.9 100 448-547 394-499 (780)
130 3u4q_A ATP-dependent helicase/ 93.5 0.13 4.3E-06 64.9 8.8 73 246-322 9-81 (1232)
131 2z4s_A Chromosomal replication 93.3 0.23 7.8E-06 55.2 9.7 44 372-415 194-239 (440)
132 3dm5_A SRP54, signal recogniti 93.3 0.34 1.1E-05 53.6 10.8 132 263-425 101-236 (443)
133 3eie_A Vacuolar protein sortin 93.3 0.64 2.2E-05 49.1 12.7 51 222-278 12-67 (322)
134 1a5t_A Delta prime, HOLB; zinc 93.0 0.15 5.1E-06 54.4 7.4 41 248-289 3-50 (334)
135 3h4m_A Proteasome-activating n 93.0 0.25 8.4E-06 51.0 8.9 54 222-278 11-67 (285)
136 3oiy_A Reverse gyrase helicase 92.9 0.27 9.3E-06 53.7 9.5 99 448-546 41-147 (414)
137 3u61_B DNA polymerase accessor 92.6 0.32 1.1E-05 51.2 9.3 41 371-411 104-144 (324)
138 3cf0_A Transitional endoplasmi 92.4 0.63 2.2E-05 48.6 11.1 53 223-278 10-65 (301)
139 1w4r_A Thymidine kinase; type 92.4 0.13 4.3E-06 50.3 5.2 39 261-307 19-57 (195)
140 2qby_A CDC6 homolog 1, cell di 92.2 0.42 1.5E-05 51.1 9.7 17 262-278 45-61 (386)
141 2qgz_A Helicase loader, putati 92.1 0.48 1.6E-05 49.8 9.8 17 262-278 152-168 (308)
142 3syl_A Protein CBBX; photosynt 92.0 0.12 4.2E-06 54.0 5.0 16 263-278 68-83 (309)
143 3n70_A Transport activator; si 91.8 0.35 1.2E-05 44.5 7.4 19 260-278 22-40 (145)
144 4b4t_M 26S protease regulatory 91.8 0.65 2.2E-05 51.2 10.6 55 221-278 174-231 (434)
145 3bos_A Putative DNA replicatio 91.6 0.18 6E-06 50.2 5.4 18 261-278 51-68 (242)
146 3co5_A Putative two-component 91.5 0.16 5.4E-06 46.9 4.5 20 259-278 24-43 (143)
147 1njg_A DNA polymerase III subu 91.4 2.6 8.9E-05 41.1 13.9 15 264-278 47-61 (250)
148 3pfi_A Holliday junction ATP-d 91.4 1.2 4.2E-05 46.9 12.1 16 263-278 56-71 (338)
149 2qz4_A Paraplegin; AAA+, SPG7, 91.0 2.9 0.0001 42.0 14.0 17 262-278 39-55 (262)
150 1sxj_E Activator 1 40 kDa subu 90.9 0.51 1.7E-05 50.2 8.5 42 371-413 133-174 (354)
151 4b4t_J 26S protease regulatory 90.1 0.95 3.2E-05 49.3 9.7 53 223-278 143-198 (405)
152 2p6n_A ATP-dependent RNA helic 89.7 2.2 7.4E-05 41.3 11.2 71 298-378 54-128 (191)
153 4ddu_A Reverse gyrase; topoiso 89.7 0.47 1.6E-05 58.8 7.8 99 448-546 98-204 (1104)
154 1iqp_A RFCS; clamp loader, ext 89.6 1.1 3.8E-05 46.7 9.7 39 371-410 109-147 (327)
155 2rb4_A ATP-dependent RNA helic 89.6 1.4 4.9E-05 41.7 9.7 71 298-378 34-108 (175)
156 1xwi_A SKD1 protein; VPS4B, AA 89.4 3.3 0.00011 43.6 13.3 50 223-278 7-61 (322)
157 2hjv_A ATP-dependent RNA helic 89.3 2.2 7.6E-05 39.8 10.7 73 298-380 35-111 (163)
158 3uk6_A RUVB-like 2; hexameric 89.2 4.6 0.00016 42.9 14.4 16 263-278 71-86 (368)
159 3vfd_A Spastin; ATPase, microt 89.0 2.5 8.4E-05 45.8 12.2 17 262-278 148-164 (389)
160 2eyq_A TRCF, transcription-rep 89.0 1 3.6E-05 56.0 10.2 99 446-544 627-731 (1151)
161 1t6n_A Probable ATP-dependent 88.7 2.4 8.3E-05 41.4 10.9 73 470-545 82-165 (220)
162 1sxj_D Activator 1 41 kDa subu 88.0 0.81 2.8E-05 48.5 7.3 40 371-411 132-171 (353)
163 2fna_A Conserved hypothetical 87.8 14 0.00048 38.4 17.0 53 355-411 123-178 (357)
164 4b4t_K 26S protease regulatory 87.5 6 0.0002 43.4 14.0 54 222-278 166-222 (428)
165 2q6t_A DNAB replication FORK h 87.5 1.5 5.3E-05 48.4 9.4 114 262-386 200-324 (444)
166 2r6a_A DNAB helicase, replicat 87.5 2.3 8E-05 47.1 10.9 115 261-386 202-327 (454)
167 1fuk_A Eukaryotic initiation f 87.0 3.1 0.0001 38.9 10.0 73 298-380 30-106 (165)
168 1t5i_A C_terminal domain of A 86.9 1.7 5.8E-05 41.2 8.2 73 298-380 31-107 (172)
169 1jr3_A DNA polymerase III subu 86.9 3.3 0.00011 44.0 11.5 23 264-287 40-62 (373)
170 2dr3_A UPF0273 protein PH0284; 86.9 3.2 0.00011 41.1 10.7 50 261-319 22-71 (247)
171 3eaq_A Heat resistant RNA depe 86.8 2.1 7.2E-05 42.0 9.1 71 298-378 31-105 (212)
172 2v1x_A ATP-dependent DNA helic 86.7 1.1 3.8E-05 51.6 8.0 79 447-528 63-144 (591)
173 1n0w_A DNA repair protein RAD5 86.5 3.2 0.00011 41.1 10.4 18 261-278 23-40 (243)
174 1w5s_A Origin recognition comp 86.5 1.4 4.7E-05 47.8 8.2 16 263-278 51-68 (412)
175 2qp9_X Vacuolar protein sortin 86.4 1.2 4.2E-05 47.7 7.6 16 263-278 85-100 (355)
176 3pvs_A Replication-associated 85.8 0.98 3.3E-05 50.1 6.6 16 263-278 51-66 (447)
177 2oxc_A Probable ATP-dependent 85.3 4.8 0.00016 39.7 11.0 92 448-544 66-172 (230)
178 1sxj_C Activator 1 40 kDa subu 85.2 2.6 8.9E-05 44.5 9.4 39 371-410 109-147 (340)
179 1sxj_B Activator 1 37 kDa subu 85.0 2.6 8.9E-05 43.7 9.2 38 372-410 107-144 (323)
180 3e70_C DPA, signal recognition 84.9 3.4 0.00012 43.7 10.1 136 262-425 129-265 (328)
181 4b4t_H 26S protease regulatory 84.8 0.92 3.1E-05 50.2 5.7 54 222-278 203-259 (467)
182 3hu3_A Transitional endoplasmi 84.7 1.7 5.7E-05 48.8 7.9 42 373-414 298-349 (489)
183 1hqc_A RUVB; extended AAA-ATPa 84.5 2.8 9.6E-05 43.7 9.2 16 263-278 39-54 (324)
184 4a1f_A DNAB helicase, replicat 84.5 1.4 4.9E-05 46.8 6.8 115 261-386 45-170 (338)
185 1ixz_A ATP-dependent metallopr 84.5 6.7 0.00023 39.2 11.8 54 222-278 10-65 (254)
186 3t15_A Ribulose bisphosphate c 83.7 1.1 3.9E-05 46.5 5.7 16 263-278 37-52 (293)
187 1cr0_A DNA primase/helicase; R 83.5 2.4 8E-05 43.9 8.0 18 261-278 34-51 (296)
188 2w0m_A SSO2452; RECA, SSPF, un 83.4 2.4 8.3E-05 41.5 7.8 18 261-278 22-39 (235)
189 3ber_A Probable ATP-dependent 83.4 3.6 0.00012 41.3 9.2 71 470-544 111-192 (249)
190 1sxj_A Activator 1 95 kDa subu 83.3 1.7 5.9E-05 49.1 7.3 41 371-413 147-189 (516)
191 1xti_A Probable ATP-dependent 83.3 5.1 0.00017 42.7 10.9 94 448-544 50-158 (391)
192 1qvr_A CLPB protein; coiled co 83.3 2.3 7.8E-05 51.3 8.8 16 263-278 192-207 (854)
193 3bor_A Human initiation factor 83.0 3.5 0.00012 41.0 8.8 73 469-544 97-179 (237)
194 3hjh_A Transcription-repair-co 82.7 2.8 9.6E-05 46.9 8.6 52 261-323 13-64 (483)
195 2gno_A DNA polymerase III, gam 82.5 4.9 0.00017 41.9 10.0 43 370-414 80-122 (305)
196 1vec_A ATP-dependent RNA helic 82.4 5.9 0.0002 38.0 10.0 72 469-544 70-152 (206)
197 2jgn_A DBX, DDX3, ATP-dependen 82.4 2.6 8.7E-05 40.5 7.2 71 298-378 46-120 (185)
198 3lda_A DNA repair protein RAD5 82.1 11 0.00039 40.8 13.0 24 255-278 166-194 (400)
199 1ls1_A Signal recognition part 82.1 8 0.00027 40.1 11.4 53 371-423 179-232 (295)
200 3fe2_A Probable ATP-dependent 81.3 4.9 0.00017 40.0 9.2 71 470-544 102-182 (242)
201 2qen_A Walker-type ATPase; unk 81.1 6 0.00021 41.3 10.2 18 261-278 30-47 (350)
202 2px0_A Flagellar biosynthesis 80.9 5.2 0.00018 41.6 9.4 18 261-278 104-121 (296)
203 3i5x_A ATP-dependent RNA helic 80.6 11 0.00039 42.5 13.0 78 297-381 338-419 (563)
204 1vma_A Cell division protein F 80.4 19 0.00065 37.5 13.6 17 262-278 104-120 (306)
205 2pl3_A Probable ATP-dependent 80.4 4.7 0.00016 39.9 8.6 70 470-544 97-177 (236)
206 2pk2_A Cyclin-T1, protein TAT; 80.4 1.1 3.6E-05 48.3 3.9 25 581-605 232-256 (358)
207 2ehv_A Hypothetical protein PH 80.1 2.2 7.7E-05 42.4 6.1 44 371-414 134-182 (251)
208 1oyw_A RECQ helicase, ATP-depe 80.1 2 6.9E-05 48.6 6.4 59 470-528 65-123 (523)
209 2i4i_A ATP-dependent RNA helic 79.8 6.7 0.00023 42.2 10.3 72 297-378 275-350 (417)
210 1nlf_A Regulatory protein REPA 79.0 3.5 0.00012 42.2 7.3 28 259-287 27-54 (279)
211 2gxq_A Heat resistant RNA depe 78.7 8.4 0.00029 36.9 9.6 71 470-544 72-150 (207)
212 2chq_A Replication factor C sm 78.5 2.3 8E-05 44.0 5.8 15 264-278 40-54 (319)
213 3sqw_A ATP-dependent RNA helic 78.4 14 0.0005 41.9 13.0 79 297-382 287-369 (579)
214 1qde_A EIF4A, translation init 78.4 6.7 0.00023 38.2 8.9 93 447-544 55-161 (224)
215 3i32_A Heat resistant RNA depe 78.3 4.2 0.00014 42.4 7.7 71 298-378 28-102 (300)
216 1r6b_X CLPA protein; AAA+, N-t 76.8 6.1 0.00021 46.7 9.5 17 262-278 207-223 (758)
217 3cmu_A Protein RECA, recombina 76.3 2.6 9E-05 54.8 6.3 44 256-307 1415-1464(2050)
218 1gku_B Reverse gyrase, TOP-RG; 76.1 4.5 0.00016 49.9 8.3 74 469-544 98-181 (1054)
219 3m6a_A ATP-dependent protease 75.7 3.3 0.00011 47.1 6.4 25 261-287 107-131 (543)
220 3pey_A ATP-dependent RNA helic 74.9 13 0.00044 39.3 10.7 76 297-382 242-321 (395)
221 2zts_A Putative uncharacterize 74.9 3.5 0.00012 40.9 5.8 23 261-284 29-51 (251)
222 3fht_A ATP-dependent RNA helic 74.8 8.3 0.00028 41.3 9.2 71 298-378 266-340 (412)
223 4a74_A DNA repair and recombin 74.8 11 0.00039 36.5 9.5 18 261-278 24-41 (231)
224 1wp9_A ATP-dependent RNA helic 74.6 7.2 0.00025 42.4 8.8 91 449-544 29-131 (494)
225 1q0u_A Bstdead; DEAD protein, 74.5 3.9 0.00013 39.9 5.9 72 469-544 71-156 (219)
226 2z43_A DNA repair and recombin 74.3 7.1 0.00024 41.0 8.2 25 261-286 106-130 (324)
227 2d7d_A Uvrabc system protein B 74.2 60 0.0021 37.5 16.9 78 297-384 444-525 (661)
228 2l8b_A Protein TRAI, DNA helic 74.2 1.8 6.2E-05 41.5 3.1 121 248-412 35-158 (189)
229 3iuy_A Probable ATP-dependent 74.1 5.7 0.0002 38.9 7.1 72 469-544 93-173 (228)
230 1wrb_A DJVLGB; RNA helicase, D 74.1 25 0.00085 34.8 12.0 113 471-588 101-228 (253)
231 3bh0_A DNAB-like replicative h 73.9 6.6 0.00023 41.1 7.8 51 261-320 67-117 (315)
232 3bgw_A DNAB-like replicative h 73.8 3.1 0.00011 46.0 5.4 112 262-386 197-324 (444)
233 2zr9_A Protein RECA, recombina 73.7 1.7 5.9E-05 46.4 3.2 25 262-287 61-85 (349)
234 3cf2_A TER ATPase, transitiona 73.2 3 0.0001 49.6 5.3 54 222-278 471-527 (806)
235 2yhs_A FTSY, cell division pro 73.1 8.6 0.0003 42.9 8.7 55 371-425 374-435 (503)
236 1fuu_A Yeast initiation factor 72.0 13 0.00045 39.3 9.9 92 448-544 63-168 (394)
237 3ly5_A ATP-dependent RNA helic 71.1 17 0.00059 36.5 10.0 71 470-544 126-207 (262)
238 1c4o_A DNA nucleotide excision 71.0 67 0.0023 37.2 16.2 78 297-384 438-519 (664)
239 1hv8_A Putative ATP-dependent 70.7 9.6 0.00033 39.9 8.3 74 297-380 237-314 (367)
240 2eyu_A Twitching motility prot 70.6 2 6.9E-05 43.9 2.7 20 259-278 22-41 (261)
241 3hr8_A Protein RECA; alpha and 70.3 3.3 0.00011 44.4 4.4 38 262-307 61-98 (356)
242 1ypw_A Transitional endoplasmi 69.6 13 0.00045 44.3 10.0 18 261-278 237-254 (806)
243 2j0s_A ATP-dependent RNA helic 69.0 13 0.00045 39.8 9.1 72 298-379 276-351 (410)
244 2xxa_A Signal recognition part 68.8 19 0.00065 39.5 10.3 17 263-279 101-117 (433)
245 1s2m_A Putative ATP-dependent 68.7 18 0.0006 38.5 10.0 93 448-544 63-169 (400)
246 2ffh_A Protein (FFH); SRP54, s 68.3 31 0.0011 37.6 11.8 17 262-278 98-114 (425)
247 2yjt_D ATP-dependent RNA helic 71.3 1.1 3.6E-05 42.4 0.0 72 298-379 30-105 (170)
248 3eiq_A Eukaryotic initiation f 68.1 22 0.00075 37.9 10.7 94 448-544 82-189 (414)
249 1e9r_A Conjugal transfer prote 68.0 4.2 0.00014 44.6 4.9 44 261-312 52-95 (437)
250 3jvv_A Twitching mobility prot 67.9 4.7 0.00016 43.1 5.1 26 261-287 122-147 (356)
251 2db3_A ATP-dependent RNA helic 67.1 12 0.00043 40.7 8.5 68 301-378 303-374 (434)
252 3gk5_A Uncharacterized rhodane 67.0 4.7 0.00016 34.8 4.0 46 460-505 45-90 (108)
253 3dkp_A Probable ATP-dependent 66.8 5 0.00017 39.9 4.7 72 470-544 98-181 (245)
254 1v5w_A DMC1, meiotic recombina 66.7 12 0.00042 39.5 8.0 44 262-307 122-165 (343)
255 3u4q_B ATP-dependent helicase/ 66.6 7.1 0.00024 48.7 7.1 89 265-383 4-92 (1166)
256 2j37_W Signal recognition part 65.9 32 0.0011 38.4 11.5 15 264-278 103-117 (504)
257 3fmo_B ATP-dependent RNA helic 65.9 12 0.0004 38.8 7.5 108 470-588 162-286 (300)
258 2i1q_A DNA repair and recombin 65.3 19 0.00065 37.4 9.2 24 255-278 86-114 (322)
259 3cmu_A Protein RECA, recombina 65.3 7 0.00024 50.9 6.6 46 261-315 1080-1125(2050)
260 4a2p_A RIG-I, retinoic acid in 64.7 9.4 0.00032 42.8 7.1 71 470-544 55-136 (556)
261 3cf2_A TER ATPase, transitiona 64.7 9.6 0.00033 45.3 7.2 16 263-278 239-254 (806)
262 2v3c_C SRP54, signal recogniti 64.0 5.5 0.00019 43.8 4.8 16 263-278 100-115 (432)
263 1pzn_A RAD51, DNA repair and r 63.0 22 0.00076 37.6 9.2 24 255-278 119-147 (349)
264 3tbk_A RIG-I helicase domain; 62.7 6.9 0.00024 43.8 5.4 71 470-544 52-133 (555)
265 4b4t_L 26S protease subunit RP 61.9 16 0.00056 40.0 8.0 54 222-278 175-231 (437)
266 1p9r_A General secretion pathw 61.1 11 0.00039 41.1 6.6 25 262-287 167-191 (418)
267 3flh_A Uncharacterized protein 60.6 7 0.00024 34.6 4.0 46 460-505 61-108 (124)
268 1yks_A Genome polyprotein [con 60.1 8.2 0.00028 42.4 5.3 68 298-377 177-245 (440)
269 4a2q_A RIG-I, retinoic acid in 59.6 13 0.00043 44.3 7.2 71 470-544 296-377 (797)
270 1wv9_A Rhodanese homolog TT165 58.9 8.9 0.0003 31.9 4.2 42 463-505 47-88 (94)
271 1lv7_A FTSH; alpha/beta domain 58.9 12 0.00041 37.4 6.0 16 263-278 46-61 (257)
272 2l82_A Designed protein OR32; 57.1 23 0.00079 30.3 6.2 51 473-523 5-55 (162)
273 3b85_A Phosphate starvation-in 56.4 12 0.00042 36.5 5.3 32 247-278 7-38 (208)
274 1tf7_A KAIC; homohexamer, hexa 56.3 44 0.0015 37.4 10.7 125 261-413 280-417 (525)
275 2oca_A DAR protein, ATP-depend 56.0 57 0.0019 36.0 11.5 75 299-382 348-426 (510)
276 3io5_A Recombination and repai 55.8 7.9 0.00027 40.7 3.9 41 264-310 30-70 (333)
277 3dmn_A Putative DNA helicase; 55.6 28 0.00096 32.7 7.6 65 470-549 61-125 (174)
278 3b6e_A Interferon-induced heli 55.5 9 0.00031 36.8 4.2 55 470-528 82-140 (216)
279 2z0m_A 337AA long hypothetical 55.4 31 0.0011 35.3 8.7 90 448-544 36-135 (337)
280 2v6i_A RNA helicase; membrane, 55.2 15 0.0005 40.2 6.3 53 298-355 171-224 (431)
281 2xau_A PRE-mRNA-splicing facto 54.8 24 0.00084 41.7 8.5 75 298-378 303-393 (773)
282 3foj_A Uncharacterized protein 54.4 4.7 0.00016 34.2 1.6 37 469-505 55-91 (100)
283 3g5j_A Putative ATP/GTP bindin 54.3 5.4 0.00018 35.5 2.1 38 469-506 87-126 (134)
284 3iwh_A Rhodanese-like domain p 53.8 5.2 0.00018 34.4 1.8 38 467-504 53-90 (103)
285 1q57_A DNA primase/helicase; d 53.5 22 0.00074 39.7 7.4 50 261-318 241-290 (503)
286 3eme_A Rhodanese-like domain p 53.5 5.6 0.00019 33.8 2.0 37 469-505 55-91 (103)
287 2oap_1 GSPE-2, type II secreti 53.2 12 0.00043 41.9 5.3 31 248-278 245-276 (511)
288 4a2w_A RIG-I, retinoic acid in 53.0 22 0.00075 43.1 7.8 71 470-544 296-377 (936)
289 3o8b_A HCV NS3 protease/helica 52.9 13 0.00045 43.1 5.6 67 297-377 395-461 (666)
290 4ag6_A VIRB4 ATPase, type IV s 52.6 14 0.00048 39.7 5.5 42 261-310 34-75 (392)
291 1j8m_F SRP54, signal recogniti 52.3 79 0.0027 32.5 11.0 17 262-278 98-114 (297)
292 2wv9_A Flavivirin protease NS2 52.3 17 0.00058 42.3 6.4 68 298-377 410-478 (673)
293 3cmw_A Protein RECA, recombina 52.3 8.9 0.0003 49.2 4.3 120 262-416 1431-1570(1706)
294 4b4t_I 26S protease regulatory 51.8 19 0.00063 39.4 6.2 54 222-278 176-232 (437)
295 2ykg_A Probable ATP-dependent 51.4 12 0.00041 43.5 5.1 70 471-544 62-142 (696)
296 1ofh_A ATP-dependent HSL prote 51.1 30 0.001 35.1 7.6 17 262-278 50-66 (310)
297 3b9p_A CG5977-PA, isoform A; A 51.0 18 0.00061 36.9 5.8 46 223-278 16-70 (297)
298 3nbx_X ATPase RAVA; AAA+ ATPas 51.0 16 0.00056 40.8 5.8 26 253-278 32-57 (500)
299 2bjv_A PSP operon transcriptio 50.3 9.8 0.00034 38.3 3.6 18 261-278 28-45 (265)
300 2r44_A Uncharacterized protein 50.0 11 0.00036 39.4 3.9 23 256-278 40-62 (331)
301 1tf5_A Preprotein translocase 49.9 40 0.0014 40.0 8.9 69 470-544 124-209 (844)
302 4akg_A Glutathione S-transfera 49.5 17 0.00059 48.9 6.5 48 232-280 890-941 (2695)
303 4gl2_A Interferon-induced heli 49.4 5.1 0.00017 46.8 1.4 70 471-544 57-142 (699)
304 1tue_A Replication protein E1; 48.6 24 0.00083 34.5 5.8 75 195-287 4-82 (212)
305 1gmx_A GLPE protein; transfera 48.5 12 0.0004 32.1 3.3 38 469-506 57-95 (108)
306 3rc3_A ATP-dependent RNA helic 48.3 35 0.0012 39.7 8.2 73 301-384 323-401 (677)
307 3hws_A ATP-dependent CLP prote 48.3 28 0.00094 36.8 6.9 18 261-278 50-67 (363)
308 1u0j_A DNA replication protein 48.1 31 0.0011 35.1 6.8 43 234-279 73-121 (267)
309 1tq1_A AT5G66040, senescence-a 47.8 17 0.00059 32.2 4.4 37 469-505 81-118 (129)
310 3vaa_A Shikimate kinase, SK; s 47.0 11 0.00036 36.2 3.1 19 260-278 23-41 (199)
311 2gza_A Type IV secretion syste 46.4 12 0.00043 39.8 3.8 20 259-278 172-191 (361)
312 1w36_B RECB, exodeoxyribonucle 46.3 32 0.0011 42.9 8.0 59 264-322 18-80 (1180)
313 2fwr_A DNA repair protein RAD2 46.2 17 0.00057 40.0 4.9 82 448-544 113-198 (472)
314 4f4c_A Multidrug resistance pr 46.2 6.5 0.00022 49.7 1.7 44 370-413 1233-1276(1321)
315 2c9o_A RUVB-like 1; hexameric 45.0 22 0.00075 39.1 5.7 45 222-278 31-79 (456)
316 1kgd_A CASK, peripheral plasma 44.7 11 0.00037 35.6 2.7 18 261-278 4-21 (180)
317 3nwn_A Kinesin-like protein KI 44.3 15 0.0005 39.3 3.8 24 255-278 96-121 (359)
318 1qhx_A CPT, protein (chloramph 44.3 9 0.00031 35.7 2.0 17 262-278 3-19 (178)
319 2fsf_A Preprotein translocase 44.2 28 0.00095 41.3 6.5 70 469-544 114-200 (853)
320 1ojl_A Transcriptional regulat 43.5 24 0.00082 36.5 5.3 18 261-278 24-41 (304)
321 3iij_A Coilin-interacting nucl 43.5 8.7 0.0003 36.0 1.8 19 260-278 9-27 (180)
322 3a8t_A Adenylate isopentenyltr 43.3 12 0.00041 39.6 3.0 16 263-278 41-56 (339)
323 1lvg_A Guanylate kinase, GMP k 43.1 14 0.00048 35.5 3.2 25 261-287 3-27 (198)
324 3l9o_A ATP-dependent RNA helic 42.7 17 0.00058 44.9 4.6 65 469-544 226-296 (1108)
325 3trf_A Shikimate kinase, SK; a 42.6 14 0.00046 34.7 3.0 17 262-278 5-21 (185)
326 1bg2_A Kinesin; motor protein, 42.5 17 0.00057 38.3 3.9 24 255-278 69-94 (325)
327 2fsx_A RV0390, COG0607: rhodan 42.5 36 0.0012 30.9 5.8 37 469-505 79-116 (148)
328 3lw7_A Adenylate kinase relate 42.0 11 0.00038 34.5 2.3 15 264-278 3-17 (179)
329 1kht_A Adenylate kinase; phosp 41.5 12 0.0004 35.2 2.3 18 261-278 2-19 (192)
330 3dc4_A Kinesin-like protein NO 41.4 17 0.00057 38.6 3.7 24 255-278 86-111 (344)
331 4etp_A Kinesin-like protein KA 41.1 19 0.00066 39.0 4.3 24 255-278 132-157 (403)
332 2r62_A Cell division protease 40.8 15 0.0005 36.9 3.1 17 262-278 44-60 (268)
333 1kag_A SKI, shikimate kinase I 40.6 18 0.00061 33.4 3.4 23 262-286 4-26 (173)
334 3tau_A Guanylate kinase, GMP k 40.5 15 0.00052 35.5 3.1 18 261-278 7-24 (208)
335 2qor_A Guanylate kinase; phosp 40.2 13 0.00044 35.8 2.5 20 259-278 9-28 (204)
336 2zfi_A Kinesin-like protein KI 39.9 18 0.00062 38.7 3.7 24 255-278 81-106 (366)
337 2fz4_A DNA repair protein RAD2 39.9 34 0.0012 33.8 5.6 65 448-527 113-178 (237)
338 2y65_A Kinesin, kinesin heavy 39.9 19 0.00066 38.5 3.9 24 255-278 76-101 (365)
339 4a14_A Kinesin, kinesin-like p 39.8 19 0.00066 38.1 3.9 24 255-278 75-100 (344)
340 1t5c_A CENP-E protein, centrom 39.8 18 0.00061 38.4 3.6 24 255-278 69-94 (349)
341 1v8k_A Kinesin-like protein KI 39.8 18 0.00063 39.2 3.8 24 255-278 146-171 (410)
342 2vvg_A Kinesin-2; motor protei 39.7 20 0.00067 38.2 3.9 24 255-278 81-106 (350)
343 2h58_A Kinesin-like protein KI 39.6 20 0.00068 37.8 3.9 25 254-278 71-97 (330)
344 2j41_A Guanylate kinase; GMP, 39.6 14 0.00049 35.1 2.7 19 260-278 4-22 (207)
345 1iy2_A ATP-dependent metallopr 39.5 43 0.0015 33.7 6.5 52 223-278 35-89 (278)
346 2ze6_A Isopentenyl transferase 39.5 15 0.00052 36.9 3.0 15 264-278 3-17 (253)
347 3foz_A TRNA delta(2)-isopenten 39.4 15 0.00052 38.3 3.0 15 264-278 12-26 (316)
348 1z5z_A Helicase of the SNF2/RA 39.4 91 0.0031 31.4 8.9 95 270-381 92-192 (271)
349 1y63_A LMAJ004144AAA protein; 39.3 13 0.00045 35.1 2.3 18 261-278 9-26 (184)
350 2qmh_A HPR kinase/phosphorylas 39.2 14 0.00047 36.1 2.4 18 261-278 33-50 (205)
351 2nr8_A Kinesin-like protein KI 39.2 19 0.00067 38.3 3.8 24 255-278 95-120 (358)
352 3b6u_A Kinesin-like protein KI 39.2 19 0.00066 38.5 3.8 24 255-278 93-118 (372)
353 3gbj_A KIF13B protein; kinesin 39.1 18 0.00063 38.4 3.6 24 255-278 84-109 (354)
354 2pt7_A CAG-ALFA; ATPase, prote 39.0 17 0.00057 38.3 3.3 20 259-278 168-187 (330)
355 3ice_A Transcription terminati 39.0 1.1E+02 0.0038 33.0 9.6 31 248-278 157-190 (422)
356 1qxn_A SUD, sulfide dehydrogen 38.8 24 0.00082 31.7 3.9 37 469-505 81-118 (137)
357 3exa_A TRNA delta(2)-isopenten 38.7 14 0.00048 38.7 2.6 16 263-278 4-19 (322)
358 3nzo_A UDP-N-acetylglucosamine 38.5 1.9E+02 0.0066 30.6 11.9 90 253-355 26-119 (399)
359 1goj_A Kinesin, kinesin heavy 38.4 19 0.00065 38.3 3.6 24 255-278 72-97 (355)
360 1x88_A Kinesin-like protein KI 38.2 17 0.0006 38.7 3.3 24 255-278 80-105 (359)
361 2jlq_A Serine protease subunit 38.2 25 0.00084 38.6 4.6 68 298-377 188-256 (451)
362 2wbe_C Bipolar kinesin KRP-130 38.2 20 0.00067 38.5 3.7 24 255-278 92-117 (373)
363 3nwj_A ATSK2; P loop, shikimat 38.0 21 0.00073 35.9 3.8 22 257-278 43-64 (250)
364 3lre_A Kinesin-like protein KI 37.8 20 0.00067 38.2 3.6 24 255-278 97-122 (355)
365 3nhv_A BH2092 protein; alpha-b 37.8 19 0.00066 32.7 3.1 37 469-505 71-109 (144)
366 2x8a_A Nuclear valosin-contain 37.6 6.4 0.00022 40.3 -0.3 53 223-278 5-60 (274)
367 3tr0_A Guanylate kinase, GMP k 37.5 16 0.00056 34.7 2.7 25 261-287 6-30 (205)
368 2ewv_A Twitching motility prot 37.5 16 0.00056 39.0 3.0 19 260-278 134-152 (372)
369 3cm0_A Adenylate kinase; ATP-b 37.2 14 0.00046 34.7 2.0 18 261-278 3-20 (186)
370 1zp6_A Hypothetical protein AT 36.8 16 0.00054 34.4 2.4 18 261-278 8-25 (191)
371 2ipc_A Preprotein translocase 36.7 64 0.0022 38.6 7.9 53 470-528 120-176 (997)
372 2ius_A DNA translocase FTSK; n 36.6 37 0.0013 38.0 5.7 26 261-287 166-191 (512)
373 3hix_A ALR3790 protein; rhodan 36.4 20 0.00069 30.5 2.9 37 469-505 51-88 (106)
374 3t0q_A AGR253WP; kinesin, alph 36.4 17 0.0006 38.5 2.9 24 255-278 77-102 (349)
375 2heh_A KIF2C protein; kinesin, 36.3 21 0.00072 38.4 3.5 24 255-278 126-151 (387)
376 3u06_A Protein claret segregat 36.2 23 0.0008 38.4 3.9 25 254-278 129-155 (412)
377 4f4c_A Multidrug resistance pr 36.0 9.7 0.00033 48.1 0.9 42 370-411 570-611 (1321)
378 2owm_A Nckin3-434, related to 36.0 22 0.00076 39.0 3.7 24 255-278 128-153 (443)
379 1f9v_A Kinesin-like protein KA 35.9 18 0.00061 38.4 2.9 24 255-278 76-101 (347)
380 3ney_A 55 kDa erythrocyte memb 35.7 18 0.00063 35.0 2.7 19 260-278 17-35 (197)
381 2whx_A Serine protease/ntpase/ 35.6 45 0.0015 38.3 6.4 68 298-377 355-423 (618)
382 1nij_A Hypothetical protein YJ 35.6 26 0.00087 36.5 4.1 15 264-278 6-20 (318)
383 1ly1_A Polynucleotide kinase; 35.6 16 0.00055 33.8 2.3 15 264-278 4-18 (181)
384 3cob_A Kinesin heavy chain-lik 35.4 20 0.00067 38.4 3.1 24 255-278 71-96 (369)
385 3kb2_A SPBC2 prophage-derived 35.3 16 0.00056 33.5 2.2 15 264-278 3-17 (173)
386 2r8r_A Sensor protein; KDPD, P 35.2 30 0.001 34.2 4.3 17 264-280 8-24 (228)
387 3ipz_A Monothiol glutaredoxin- 35.2 59 0.002 27.7 5.7 51 464-514 11-67 (109)
388 3vkg_A Dynein heavy chain, cyt 35.1 41 0.0014 46.0 6.6 54 232-288 873-930 (3245)
389 1um8_A ATP-dependent CLP prote 35.1 62 0.0021 34.2 7.1 17 262-278 72-88 (376)
390 1z6g_A Guanylate kinase; struc 35.0 23 0.0008 34.5 3.4 27 259-287 20-46 (218)
391 1u94_A RECA protein, recombina 34.9 30 0.001 36.7 4.5 38 261-306 62-99 (356)
392 2va8_A SSO2462, SKI2-type heli 34.8 80 0.0027 36.6 8.6 76 298-379 252-363 (715)
393 3crm_A TRNA delta(2)-isopenten 34.6 20 0.00068 37.6 3.0 15 264-278 7-21 (323)
394 3p32_A Probable GTPase RV1496/ 34.4 1.9E+02 0.0066 30.1 10.9 15 264-278 81-95 (355)
395 3mm4_A Histidine kinase homolo 34.3 2.9E+02 0.01 25.8 13.2 127 260-413 18-161 (206)
396 2r2a_A Uncharacterized protein 34.2 32 0.0011 33.2 4.2 16 264-279 7-22 (199)
397 3zyw_A Glutaredoxin-3; metal b 34.2 59 0.002 28.0 5.5 48 467-514 12-65 (111)
398 3a00_A Guanylate kinase, GMP k 34.1 25 0.00084 33.2 3.3 23 263-287 2-24 (186)
399 3bfn_A Kinesin-like protein KI 34.1 19 0.00064 38.9 2.7 23 256-278 91-115 (388)
400 1ex7_A Guanylate kinase; subst 34.0 19 0.00066 34.5 2.5 16 263-278 2-17 (186)
401 3kta_A Chromosome segregation 34.0 24 0.00083 32.9 3.2 23 264-288 28-50 (182)
402 2lci_A Protein OR36; structura 34.0 1.2E+02 0.0042 25.0 6.9 67 462-528 43-109 (134)
403 3h1t_A Type I site-specific re 33.8 86 0.0029 35.4 8.5 80 297-382 438-527 (590)
404 1nkt_A Preprotein translocase 33.6 53 0.0018 39.2 6.6 69 470-544 152-237 (922)
405 1jr3_D DNA polymerase III, del 33.3 3.4E+02 0.012 27.7 12.6 74 357-432 62-138 (343)
406 4eun_A Thermoresistant glucoki 32.9 24 0.00082 33.7 3.1 18 261-278 28-45 (200)
407 2yan_A Glutaredoxin-3; oxidore 32.7 72 0.0025 26.7 5.8 56 469-524 15-76 (105)
408 1f2t_A RAD50 ABC-ATPase; DNA d 32.6 28 0.00097 31.7 3.4 23 264-288 25-47 (149)
409 2r2a_A Uncharacterized protein 32.5 27 0.00091 33.8 3.3 40 373-412 88-132 (199)
410 4fcw_A Chaperone protein CLPB; 32.4 27 0.00094 35.6 3.6 16 263-278 48-63 (311)
411 2jtq_A Phage shock protein E; 32.3 28 0.00094 28.1 2.9 36 469-505 40-76 (85)
412 3dmq_A RNA polymerase-associat 32.3 78 0.0027 38.4 8.1 77 297-382 502-584 (968)
413 1znw_A Guanylate kinase, GMP k 32.1 25 0.00086 33.8 3.1 29 258-288 16-44 (207)
414 1tev_A UMP-CMP kinase; ploop, 31.9 17 0.00059 34.1 1.8 17 262-278 3-19 (196)
415 3d3q_A TRNA delta(2)-isopenten 31.7 24 0.00081 37.3 3.0 15 264-278 9-23 (340)
416 3b5x_A Lipid A export ATP-bind 31.7 62 0.0021 36.7 6.7 42 370-411 496-537 (582)
417 2v54_A DTMP kinase, thymidylat 31.6 15 0.00053 34.9 1.4 18 261-278 3-20 (204)
418 1sky_E F1-ATPase, F1-ATP synth 31.4 58 0.002 36.0 6.1 20 259-278 148-167 (473)
419 3d8b_A Fidgetin-like protein 1 31.4 23 0.00077 37.6 2.8 17 262-278 117-133 (357)
420 2c95_A Adenylate kinase 1; tra 31.4 27 0.00091 32.8 3.1 20 259-278 6-25 (196)
421 4gp7_A Metallophosphoesterase; 31.4 18 0.00062 33.7 1.8 18 261-278 8-25 (171)
422 1ry6_A Internal kinesin; kines 31.3 30 0.001 36.9 3.7 21 258-278 78-101 (360)
423 2rep_A Kinesin-like protein KI 31.3 23 0.00078 38.0 2.8 24 255-278 107-132 (376)
424 1rj9_A FTSY, signal recognitio 31.3 40 0.0014 34.9 4.6 26 262-289 102-127 (304)
425 1s96_A Guanylate kinase, GMP k 30.9 27 0.00092 34.3 3.1 21 258-278 12-32 (219)
426 1knq_A Gluconate kinase; ALFA/ 30.8 23 0.0008 32.7 2.5 17 262-278 8-24 (175)
427 2rhm_A Putative kinase; P-loop 30.7 21 0.00071 33.5 2.2 17 262-278 5-21 (193)
428 1ak2_A Adenylate kinase isoenz 30.4 24 0.00084 34.6 2.7 18 261-278 15-32 (233)
429 1m7g_A Adenylylsulfate kinase; 30.3 27 0.00093 33.6 3.0 29 249-278 13-41 (211)
430 2plr_A DTMP kinase, probable t 30.2 17 0.00059 34.6 1.5 18 261-278 3-20 (213)
431 1vee_A Proline-rich protein fa 30.2 39 0.0013 30.0 3.8 37 469-505 73-110 (134)
432 2zj8_A DNA helicase, putative 30.0 1.1E+02 0.0037 35.6 8.7 76 298-380 237-345 (720)
433 1g8p_A Magnesium-chelatase 38 29.9 35 0.0012 35.5 4.0 18 261-278 44-61 (350)
434 2bwj_A Adenylate kinase 5; pho 29.7 24 0.00082 33.3 2.4 18 261-278 11-28 (199)
435 1xp8_A RECA protein, recombina 29.7 41 0.0014 35.9 4.4 26 262-288 74-99 (366)
436 2bdt_A BH3686; alpha-beta prot 29.5 29 0.00099 32.6 3.0 16 263-278 3-18 (189)
437 3t61_A Gluconokinase; PSI-biol 29.5 29 0.00098 33.0 3.0 16 263-278 19-34 (202)
438 2hhg_A Hypothetical protein RP 29.5 26 0.0009 31.2 2.5 37 469-505 85-122 (139)
439 1xjc_A MOBB protein homolog; s 29.5 44 0.0015 31.4 4.2 23 264-287 6-28 (169)
440 2iut_A DNA translocase FTSK; n 29.4 57 0.0019 37.0 5.7 26 262-288 214-239 (574)
441 1zuh_A Shikimate kinase; alpha 29.3 29 0.00099 31.9 2.9 16 263-278 8-23 (168)
442 3eph_A TRNA isopentenyltransfe 29.0 27 0.00091 37.9 2.8 15 264-278 4-18 (409)
443 3b9q_A Chloroplast SRP recepto 29.0 36 0.0012 35.2 3.8 26 261-288 99-124 (302)
444 2k0z_A Uncharacterized protein 28.9 43 0.0015 28.5 3.8 37 469-505 55-91 (110)
445 1via_A Shikimate kinase; struc 28.9 33 0.0011 31.7 3.2 16 263-278 5-20 (175)
446 2z83_A Helicase/nucleoside tri 28.9 34 0.0011 37.6 3.7 53 298-355 190-243 (459)
447 3e4c_A Caspase-1; zymogen, inf 28.8 59 0.002 33.6 5.3 47 471-518 61-118 (302)
448 2p6r_A Afuhel308 helicase; pro 28.8 33 0.0011 40.0 3.8 69 469-544 67-144 (702)
449 2cvh_A DNA repair and recombin 28.7 30 0.001 33.1 3.0 18 261-278 19-36 (220)
450 1in4_A RUVB, holliday junction 28.7 31 0.001 36.1 3.2 16 263-278 52-67 (334)
451 3ukw_C Bimax1 peptide; arm rep 28.5 23 0.00078 21.7 1.2 12 775-786 4-15 (28)
452 2ce7_A Cell division protein F 28.4 74 0.0025 35.2 6.4 16 263-278 50-65 (476)
453 4a4z_A Antiviral helicase SKI2 28.1 88 0.003 38.1 7.6 65 469-544 81-153 (997)
454 3fmp_B ATP-dependent RNA helic 28.1 1.1E+02 0.0037 33.4 7.8 67 471-544 163-241 (479)
455 3czc_A RMPB; alpha/beta sandwi 28.0 82 0.0028 27.0 5.4 57 298-357 18-76 (110)
456 2xgj_A ATP-dependent RNA helic 27.8 66 0.0023 39.2 6.4 87 447-544 105-198 (1010)
457 3uie_A Adenylyl-sulfate kinase 27.7 28 0.00097 33.1 2.6 18 261-278 24-41 (200)
458 3k1j_A LON protease, ATP-depen 27.6 47 0.0016 38.0 4.8 30 257-288 55-84 (604)
459 1gvn_B Zeta; postsegregational 27.3 25 0.00085 36.1 2.2 16 263-278 34-49 (287)
460 3ilm_A ALR3790 protein; rhodan 27.2 38 0.0013 30.6 3.2 37 469-505 55-92 (141)
461 3mwy_W Chromo domain-containin 27.1 2.2E+02 0.0075 33.5 10.7 93 272-382 554-653 (800)
462 1e6c_A Shikimate kinase; phosp 27.0 30 0.001 31.7 2.5 16 263-278 3-18 (173)
463 3qf7_A RAD50; ABC-ATPase, ATPa 27.0 35 0.0012 36.3 3.3 16 264-279 25-40 (365)
464 1nks_A Adenylate kinase; therm 26.9 33 0.0011 31.9 2.9 15 264-278 3-17 (194)
465 1zd8_A GTP:AMP phosphotransfer 26.8 33 0.0011 33.4 2.9 17 262-278 7-23 (227)
466 3sr0_A Adenylate kinase; phosp 26.7 34 0.0012 33.2 3.0 17 264-280 2-18 (206)
467 1zak_A Adenylate kinase; ATP:A 26.7 38 0.0013 32.8 3.3 16 263-278 6-21 (222)
468 2zan_A Vacuolar protein sortin 26.6 30 0.001 37.9 2.8 53 222-278 128-183 (444)
469 2h54_A Caspase-1; allosteric s 26.4 96 0.0033 29.3 5.9 48 470-518 43-101 (178)
470 1aky_A Adenylate kinase; ATP:A 26.4 36 0.0012 32.9 3.1 17 262-278 4-20 (220)
471 1qf9_A UMP/CMP kinase, protein 26.2 35 0.0012 31.8 2.9 15 264-278 8-22 (194)
472 3c8u_A Fructokinase; YP_612366 26.2 34 0.0012 32.8 2.9 24 262-287 22-45 (208)
473 3fkq_A NTRC-like two-domain pr 26.2 81 0.0028 33.4 6.1 26 355-381 243-268 (373)
474 3qks_A DNA double-strand break 26.1 41 0.0014 32.4 3.4 24 264-289 25-48 (203)
475 2pez_A Bifunctional 3'-phospho 26.1 26 0.00088 32.7 1.9 18 261-278 4-21 (179)
476 1ye8_A Protein THEP1, hypothet 26.0 36 0.0012 32.1 2.8 15 264-278 2-16 (178)
477 3fho_A ATP-dependent RNA helic 25.8 1.4E+02 0.0048 32.9 8.3 90 447-544 162-265 (508)
478 2iyv_A Shikimate kinase, SK; t 25.8 43 0.0015 31.1 3.4 16 263-278 3-18 (184)
479 3auy_A DNA double-strand break 25.8 37 0.0013 36.1 3.3 22 265-288 28-49 (371)
480 3h11_B Caspase-8; cell death, 25.8 82 0.0028 31.9 5.7 38 480-518 48-85 (271)
481 1wik_A Thioredoxin-like protei 25.6 1.2E+02 0.0042 25.5 6.1 47 470-516 14-66 (109)
482 1ukz_A Uridylate kinase; trans 25.6 30 0.001 32.9 2.3 16 263-278 16-31 (203)
483 3fb4_A Adenylate kinase; psych 25.6 37 0.0013 32.6 3.0 15 264-278 2-16 (216)
484 3pxg_A Negative regulator of g 25.5 43 0.0015 36.9 3.8 17 262-278 201-217 (468)
485 2og2_A Putative signal recogni 25.3 50 0.0017 35.1 4.2 26 261-288 156-181 (359)
486 4anj_A Unconventional myosin-V 25.2 60 0.0021 39.6 5.2 64 224-288 97-169 (1052)
487 3qiv_A Short-chain dehydrogena 25.2 3E+02 0.01 26.6 9.9 81 260-357 7-95 (253)
488 2vli_A Antibiotic resistance p 25.0 26 0.00089 32.5 1.7 18 261-278 4-21 (183)
489 2pt5_A Shikimate kinase, SK; a 25.0 32 0.0011 31.4 2.3 15 264-278 2-16 (168)
490 3dl0_A Adenylate kinase; phosp 24.9 39 0.0013 32.5 3.0 15 264-278 2-16 (216)
491 3umf_A Adenylate kinase; rossm 24.9 39 0.0013 33.2 2.9 17 263-279 30-46 (217)
492 3d1p_A Putative thiosulfate su 24.8 35 0.0012 30.4 2.5 37 469-505 90-127 (139)
493 2i3b_A HCR-ntpase, human cance 24.8 45 0.0016 31.8 3.4 41 370-413 103-145 (189)
494 2yvu_A Probable adenylyl-sulfa 24.7 35 0.0012 31.9 2.6 17 262-278 13-29 (186)
495 2jaq_A Deoxyguanosine kinase; 24.6 40 0.0014 31.7 3.0 15 264-278 2-16 (205)
496 3lnc_A Guanylate kinase, GMP k 24.5 29 0.00099 33.9 2.0 18 261-278 26-43 (231)
497 2cdn_A Adenylate kinase; phosp 24.5 40 0.0014 32.0 3.0 16 263-278 21-36 (201)
498 1zu4_A FTSY; GTPase, signal re 24.5 60 0.002 33.8 4.5 32 265-304 108-139 (320)
499 1jjv_A Dephospho-COA kinase; P 24.2 33 0.0011 32.7 2.3 15 265-279 5-19 (206)
500 4h1g_A Maltose binding protein 24.2 46 0.0016 38.9 3.9 26 253-278 452-479 (715)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=2e-66 Score=587.69 Aligned_cols=390 Identities=41% Similarity=0.688 Sum_probs=361.6
Q ss_pred HcCceeccCCCCCccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhc
Q 003910 210 SLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMD 289 (787)
Q Consensus 210 ~~~i~v~g~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~ 289 (787)
...+.+.|.++|.|+.+|++++|++.++++|.+.||.+|||+|.++||.+++++|+|++++||||||++|++|++.+++.
T Consensus 41 ~~~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~ 120 (434)
T 2db3_A 41 NIPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLE 120 (434)
T ss_dssp GSCEEEESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred CceeEecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHh
Confidence 44678899999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhcccc
Q 003910 290 QPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALT 369 (787)
Q Consensus 290 ~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~ 369 (787)
.+......++++|||+|||+||.||++++++++...++++.+++||.....+...+..+++|+|+||++|++++.+..+.
T Consensus 121 ~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~ 200 (434)
T 2db3_A 121 DPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFIT 200 (434)
T ss_dssp SCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCC
T ss_pred cccccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcc
Confidence 65433455789999999999999999999999988889999999999998888888889999999999999999988888
Q ss_pred ccceeEEEEechhhhhcCCChHHHHHHhhhc--CCCceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEE
Q 003910 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQI--RPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVV 447 (787)
Q Consensus 370 l~~i~~lViDEah~m~~~~f~~~i~~il~~~--~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~ 447 (787)
+.++++|||||||+|++++|...+..++..+ ++.+|+++||||+|+.+..++..++.++..+.++........+.+.+
T Consensus 201 l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~ 280 (434)
T 2db3_A 201 FEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTI 280 (434)
T ss_dssp CTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEE
T ss_pred cccCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEE
Confidence 9999999999999999999999999999875 67899999999999999999999999999999988877788888888
Q ss_pred EecCCCcchHHHHHHhcCCcCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEe
Q 003910 448 HVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIAT 527 (787)
Q Consensus 448 ~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT 527 (787)
..+. ...|...|+++|... ..++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||
T Consensus 281 ~~~~-~~~k~~~l~~~l~~~--~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT 357 (434)
T 2db3_A 281 YEVN-KYAKRSKLIEILSEQ--ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIAT 357 (434)
T ss_dssp EECC-GGGHHHHHHHHHHHC--CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEEC
T ss_pred EEeC-cHHHHHHHHHHHHhC--CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEc
Confidence 7764 456778888877654 3459999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCCccEEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEcc-ccHHHHHHHHHHHHHcCCCccHHHHH
Q 003910 528 DVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ-KEARFAGELVNSLIAAGQNVSMELMD 603 (787)
Q Consensus 528 ~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~-~d~~~~~~l~~~l~~~~~~vp~~l~~ 603 (787)
+++++|||+|++++||+||+|+++.+|+||+||+||.| +.|.|++|+++ ++...+.++++.|..+++.||++|.+
T Consensus 358 ~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g-~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~~ 433 (434)
T 2db3_A 358 SVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVG-NNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRT 433 (434)
T ss_dssp GGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTT-CCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCCGGGC-
T ss_pred hhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCC-CCCEEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHh
Confidence 99999999999999999999999999999999999999 68999999994 57889999999999999999999865
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.9e-59 Score=526.59 Aligned_cols=393 Identities=41% Similarity=0.698 Sum_probs=354.9
Q ss_pred ceeccCCCCCccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcc
Q 003910 213 IRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPE 292 (787)
Q Consensus 213 i~v~g~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~ 292 (787)
+.+.|..+|+|+.+|++++|++.+++.|...||..|||+|.++|+.++.++|+|+++|||+|||++|++|++.+++....
T Consensus 3 ~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~ 82 (417)
T 2i4i_A 3 VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGP 82 (417)
T ss_dssp EEEESTTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCC
T ss_pred cccCCCcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccc
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999998865321
Q ss_pred c-------------ccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHH
Q 003910 293 L-------------QKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRL 359 (787)
Q Consensus 293 ~-------------~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L 359 (787)
. ....++++|||+||++|+.|+++.+++++...++++..++||.....+...+..+++|+|+||++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l 162 (417)
T 2i4i_A 83 GEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRL 162 (417)
T ss_dssp CHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHH
T ss_pred cchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHH
Confidence 1 112357899999999999999999999998888999999999999888888888999999999999
Q ss_pred HHHHHhccccccceeEEEEechhhhhcCCChHHHHHHhhhc--CC--CceEEEEeccCcHHHHHHHHHHhCCCeEEEecc
Q 003910 360 IDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI--RP--DRQTLLFSATMPRKVEKLAREILSDPVRVTVGE 435 (787)
Q Consensus 360 ~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~--~~--~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~ 435 (787)
.+++....+.+..+++|||||||++.+++|...+..++... ++ .+|+++||||+++.+..++..++.++..+.+..
T Consensus 163 ~~~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 242 (417)
T 2i4i_A 163 VDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 242 (417)
T ss_dssp HHHHHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC-
T ss_pred HHHHHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCC
Confidence 99998888889999999999999999999999999998753 32 689999999999999999999999999888877
Q ss_pred cccccccceEEEEecCCCcchHHHHHHhcCCcCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHH
Q 003910 436 VGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQK 515 (787)
Q Consensus 436 ~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~ 515 (787)
.......+.+.+..+. ...+...+..++......+++||||+++..++.+++.|...++.+..+||++++.+|..+++.
T Consensus 243 ~~~~~~~i~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~ 321 (417)
T 2i4i_A 243 VGSTSENITQKVVWVE-ESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQ 321 (417)
T ss_dssp ---CCSSEEEEEEECC-GGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH
T ss_pred CCCCccCceEEEEEec-cHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHH
Confidence 7767777888777664 456778888888776567799999999999999999999999999999999999999999999
Q ss_pred hhcCCccEEEEehhhhccCCCCCccEEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEccccHHHHHHHHHHHHHcCC
Q 003910 516 FKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQ 595 (787)
Q Consensus 516 F~~G~~~VLVaT~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~l~~~~~ 595 (787)
|++|+.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.| +.|.|++|+++.+...+..+++.|...++
T Consensus 322 f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g-~~g~~~~~~~~~~~~~~~~l~~~~~~~~~ 400 (417)
T 2i4i_A 322 FRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVG-NLGLATSFFNERNINITKDLLDLLVEAKQ 400 (417)
T ss_dssp HHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC---CCEEEEEEECGGGGGGHHHHHHHHHHTTC
T ss_pred HHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCC-CCceEEEEEccccHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999 67999999999999999999999999999
Q ss_pred CccHHHHHHHHh
Q 003910 596 NVSMELMDLAMK 607 (787)
Q Consensus 596 ~vp~~l~~~a~~ 607 (787)
.+|.++.+++..
T Consensus 401 ~~~~~l~~~~~~ 412 (417)
T 2i4i_A 401 EVPSWLENMAYE 412 (417)
T ss_dssp CCCHHHHHHHTC
T ss_pred cCCHHHHHHHHh
Confidence 999999988863
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1.5e-56 Score=502.27 Aligned_cols=372 Identities=31% Similarity=0.535 Sum_probs=339.3
Q ss_pred CCCccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCC
Q 003910 220 VPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGP 299 (787)
Q Consensus 220 ~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p 299 (787)
.+.+..+|++++|++.+++.|.+.||.+|+|+|.++++.+++++++|++++||+|||++|++|++..+... ..++
T Consensus 32 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-----~~~~ 106 (410)
T 2j0s_A 32 EVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ-----VRET 106 (410)
T ss_dssp TCCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT-----SCSC
T ss_pred CccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc-----cCCc
Confidence 34567889999999999999999999999999999999999999999999999999999999999876322 3467
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEe
Q 003910 300 IGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLD 379 (787)
Q Consensus 300 ~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViD 379 (787)
++|||+||++|+.||++.++++....++.+..++|+.....+...+..+++|+|+||++|.+++....+.+..+++||||
T Consensus 107 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViD 186 (410)
T 2j0s_A 107 QALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLD 186 (410)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEc
Confidence 89999999999999999999999888999999999999988888888899999999999999998888888999999999
Q ss_pred chhhhhcCCChHHHHHHhhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcchHHH
Q 003910 380 EADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPW 459 (787)
Q Consensus 380 Eah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~ 459 (787)
|||+|.+++|...+..++..+++..|+++||||+++.+..++..++.+|..+.+.........+.+.+..+.....|...
T Consensus 187 Eah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 266 (410)
T 2j0s_A 187 EADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDT 266 (410)
T ss_dssp THHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHH
T ss_pred cHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999888877777777888888877766667777
Q ss_pred HHHhcCCcCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCc
Q 003910 460 LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSI 539 (787)
Q Consensus 460 L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v 539 (787)
|..++... ..+++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++
T Consensus 267 l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v 345 (410)
T 2j0s_A 267 LCDLYDTL-TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQV 345 (410)
T ss_dssp HHHHHHHH-TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTE
T ss_pred HHHHHHhc-CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccC
Confidence 77766543 35699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEccccHHHHHHHHHHHHHcCCCcc
Q 003910 540 KSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVS 598 (787)
Q Consensus 540 ~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~l~~~~~~vp 598 (787)
++||+||+|+++..|+||+||+||.| +.|.|++|+++.+...+..+.+.+...-..+|
T Consensus 346 ~~Vi~~~~p~s~~~~~Qr~GR~gR~g-~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 403 (410)
T 2j0s_A 346 SLIINYDLPNNRELYIHRIGRSGRYG-RKGVAINFVKNDDIRILRDIEQYYSTQIDEMP 403 (410)
T ss_dssp EEEEESSCCSSHHHHHHHHTTSSGGG-CCEEEEEEEEGGGHHHHHHHHHHTTCCCEECC
T ss_pred CEEEEECCCCCHHHHHHhcccccCCC-CceEEEEEecHHHHHHHHHHHHHhCCCceecc
Confidence 99999999999999999999999999 67999999999999999888877765555554
No 4
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.8e-55 Score=493.37 Aligned_cols=380 Identities=31% Similarity=0.527 Sum_probs=331.3
Q ss_pred CCCCCccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCC
Q 003910 218 FDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEE 297 (787)
Q Consensus 218 ~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~ 297 (787)
...+..+.+|+++++++.+++.|.+.+|..|+|+|.++|+.++.++++|++++||+|||++|++|++..+... ..
T Consensus 33 ~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-----~~ 107 (414)
T 3eiq_A 33 SNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD-----LK 107 (414)
T ss_dssp CCCCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTT-----SC
T ss_pred CCccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhc-----CC
Confidence 3456677899999999999999999999999999999999999999999999999999999999999887442 24
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHh-cCCcEEEeCHHHHHHHHHhccccccceeEE
Q 003910 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELK-AGCEIVIATPGRLIDMLKMKALTMSRVTYL 376 (787)
Q Consensus 298 ~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~-~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~l 376 (787)
++++|||+||++|+.|+++.+++++...++.+..++|+.....+...+. .+++|+|+||++|.+++....+.+..+++|
T Consensus 108 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~v 187 (414)
T 3eiq_A 108 ATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMF 187 (414)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEE
T ss_pred ceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEE
Confidence 6779999999999999999999999888999999999998888777776 578999999999999998888888999999
Q ss_pred EEechhhhhcCCChHHHHHHhhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcch
Q 003910 377 VLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEK 456 (787)
Q Consensus 377 ViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k 456 (787)
||||||++.+++|...+..++..+++..|+++||||++..+..++..++.++..+.+.........+.+.+..+.....+
T Consensus 188 ViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (414)
T 3eiq_A 188 VLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWK 267 (414)
T ss_dssp EECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTH
T ss_pred EEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhH
Confidence 99999999999999999999999999999999999999999999999999999988877777777888888877776678
Q ss_pred HHHHHHhcCCcCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCC
Q 003910 457 LPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDI 536 (787)
Q Consensus 457 ~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDi 536 (787)
...+..++... ..+++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|..+|||||+++++|||+
T Consensus 268 ~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi 346 (414)
T 3eiq_A 268 LDTLCDLYETL-TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDV 346 (414)
T ss_dssp HHHHHHHHHSS-CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCG
T ss_pred HHHHHHHHHhC-CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCc
Confidence 88887777654 45799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEccccHHHHHHHHHHHHHcCCCccHHHHHH
Q 003910 537 KSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDL 604 (787)
Q Consensus 537 p~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~l~~~~~~vp~~l~~~ 604 (787)
|++++||+|++|+++..|+||+||+||.| +.|.|++|+++.+...+..+.+.+......+|..+.++
T Consensus 347 p~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 413 (414)
T 3eiq_A 347 QQVSLVINYDLPTNRENYIHRIGRGGRFG-RKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADL 413 (414)
T ss_dssp GGCSCEEESSCCSSTHHHHHHSCCC--------CEEEEECSTHHHHHHHHHHHTTCCCEECCC-----
T ss_pred cCCCEEEEeCCCCCHHHhhhhcCcccCCC-CCceEEEEEcHHHHHHHHHHHHHHcCCccccChhhhhc
Confidence 99999999999999999999999999999 67999999999999999999998888878888776553
No 5
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=3e-53 Score=473.78 Aligned_cols=371 Identities=29% Similarity=0.500 Sum_probs=325.3
Q ss_pred CCccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCE
Q 003910 221 PRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPI 300 (787)
Q Consensus 221 P~pi~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~ 300 (787)
+.+..+|++++|++.+++.|.+.||.+|+|+|.++++.+++++++++++|||+|||++|++|++.++... ..+++
T Consensus 17 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~-----~~~~~ 91 (400)
T 1s2m_A 17 NTKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK-----LNKIQ 91 (400)
T ss_dssp ----CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT-----SCSCC
T ss_pred ccccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc-----cCCcc
Confidence 3456789999999999999999999999999999999999999999999999999999999999886432 24567
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEec
Q 003910 301 GVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDE 380 (787)
Q Consensus 301 vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDE 380 (787)
+|||+||++|+.|+++.+++++...++.+..++|+.....+...+...++|+|+||++|..++......+.++++|||||
T Consensus 92 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE 171 (400)
T 1s2m_A 92 ALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDE 171 (400)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEES
T ss_pred EEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeC
Confidence 99999999999999999999998889999999999888877777777899999999999999888777889999999999
Q ss_pred hhhhhcCCChHHHHHHhhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcchHHHH
Q 003910 381 ADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWL 460 (787)
Q Consensus 381 ah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L 460 (787)
||++.+.+|...+..++..+++..|+++||||++..+..++..++..|..+.+... .....+.+.+..+ ....|...+
T Consensus 172 aH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~k~~~l 249 (400)
T 1s2m_A 172 ADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE-LTLKGITQYYAFV-EERQKLHCL 249 (400)
T ss_dssp HHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS-CBCTTEEEEEEEC-CGGGHHHHH
T ss_pred chHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc-cccCCceeEEEEe-chhhHHHHH
Confidence 99999888888899999999889999999999999999999999999877655432 3344555655554 344566666
Q ss_pred HHhcCCcCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCcc
Q 003910 461 LEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIK 540 (787)
Q Consensus 461 ~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~ 540 (787)
..++... ..+++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 250 ~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~ 328 (400)
T 1s2m_A 250 NTLFSKL-QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVN 328 (400)
T ss_dssp HHHHHHS-CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEE
T ss_pred HHHHhhc-CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCC
Confidence 6655543 457999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEccccHHHHHHHHHHHHHcCCCccHH
Q 003910 541 SVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSME 600 (787)
Q Consensus 541 ~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~l~~~~~~vp~~ 600 (787)
+||+|++|+++..|+||+||+||.| +.|.|++|+++.|...+..+.+.+...-+++|..
T Consensus 329 ~Vi~~~~p~s~~~~~Qr~GR~gR~g-~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~ 387 (400)
T 1s2m_A 329 VVINFDFPKTAETYLHRIGRSGRFG-HLGLAINLINWNDRFNLYKIEQELGTEIAAIPAT 387 (400)
T ss_dssp EEEESSCCSSHHHHHHHHCBSSCTT-CCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSS
T ss_pred EEEEeCCCCCHHHHHHhcchhcCCC-CCceEEEEeccchHHHHHHHHHHhCCCccccccc
Confidence 9999999999999999999999999 6799999999999988888887775555555543
No 6
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.3e-52 Score=466.69 Aligned_cols=368 Identities=28% Similarity=0.485 Sum_probs=318.7
Q ss_pred CCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEE
Q 003910 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC 304 (787)
Q Consensus 225 ~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl 304 (787)
.+|++++|++.+++.|.+.||..|+|+|.++++.++.++++++++|||+|||++|++|++..+... ..++++|||
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-----~~~~~~lil 82 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-----TGQVSVLVM 82 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC-----TTCCCEEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc-----CCCeeEEEE
Confidence 569999999999999999999999999999999999999999999999999999999999876432 235689999
Q ss_pred cCcHHHHHHHHHHHHHHhhhc-CceEEEEECCCChHHHHHHHhcC-CcEEEeCHHHHHHHHHhccccccceeEEEEechh
Q 003910 305 APTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKAG-CEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD 382 (787)
Q Consensus 305 ~PtreLa~Qi~~~~~~~~~~~-~i~v~~~~gg~~~~~~~~~l~~~-~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah 382 (787)
+||++|+.||+++++++.... ++++.+++|+.........+..+ ++|+|+||++|..++......+..+++|||||||
T Consensus 83 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH 162 (391)
T 1xti_A 83 CHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECD 162 (391)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHH
T ss_pred CCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHH
Confidence 999999999999999998765 78999999998877776666554 7999999999999998887788999999999999
Q ss_pred hhhcC-CChHHHHHHhhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEEecccc-cccccceEEEEecCCCcchHHHH
Q 003910 383 RMFDL-GFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVG-MANEDITQVVHVIPSDAEKLPWL 460 (787)
Q Consensus 383 ~m~~~-~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~~k~~~L 460 (787)
++.++ ++...+..++..+++..|++++|||+++.+..++..++.+|..+.+.... .....+.+.+..+ ....+...+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l 241 (391)
T 1xti_A 163 KMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKL-KDNEKNRKL 241 (391)
T ss_dssp HHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEEC-CGGGHHHHH
T ss_pred HHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEc-CchhHHHHH
Confidence 99874 67788888888888899999999999999999999999999888765443 2334555555544 345677777
Q ss_pred HHhcCCcCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCcc
Q 003910 461 LEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIK 540 (787)
Q Consensus 461 ~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~ 540 (787)
..++... ..+++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 242 ~~~l~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~ 320 (391)
T 1xti_A 242 FDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVN 320 (391)
T ss_dssp HHHHHHS-CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEE
T ss_pred HHHHHhc-CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCC
Confidence 7766543 567999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEccc-cHHHHHHHHHHHHHcCCCccHH
Q 003910 541 SVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQK-EARFAGELVNSLIAAGQNVSME 600 (787)
Q Consensus 541 ~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~-d~~~~~~l~~~l~~~~~~vp~~ 600 (787)
+||+|++|+++..|+||+||+||.| +.|.|++|+++. +..++..+.+.+...-+++|.+
T Consensus 321 ~Vi~~~~p~s~~~~~Qr~GR~~R~g-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (391)
T 1xti_A 321 IAFNYDMPEDSDTYLHRVARAGRFG-TKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 380 (391)
T ss_dssp EEEESSCCSSHHHHHHHHCBCSSSC-CCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSC
T ss_pred EEEEeCCCCCHHHHHHhcccccCCC-CceEEEEEEcccchHHHHHHHHHHhcCChhhCCcc
Confidence 9999999999999999999999999 689999999876 4455666666554444455543
No 7
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=3.4e-54 Score=479.55 Aligned_cols=376 Identities=30% Similarity=0.519 Sum_probs=192.5
Q ss_pred CCCCccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCC
Q 003910 219 DVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEG 298 (787)
Q Consensus 219 ~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~ 298 (787)
...+++.+|++++|++.+++.|...||.+|+|+|.++++.++.++++++++|||+|||++|++|++..+... ..+
T Consensus 15 ~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~-----~~~ 89 (394)
T 1fuu_A 15 NYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS-----VKA 89 (394)
T ss_dssp SSCCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT-----CCS
T ss_pred hcccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc-----CCC
Confidence 356777899999999999999999999999999999999999999999999999999999999999886442 346
Q ss_pred CEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEE
Q 003910 299 PIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVL 378 (787)
Q Consensus 299 p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lVi 378 (787)
+++|||+||++|+.||++.+.+++...++++..++|+.........+. +++|+|+||++|...+....+.+.++++|||
T Consensus 90 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIi 168 (394)
T 1fuu_A 90 PQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFIL 168 (394)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred CCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 789999999999999999999999888899999999988776655554 5899999999999999887778889999999
Q ss_pred echhhhhcCCChHHHHHHhhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcchHH
Q 003910 379 DEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLP 458 (787)
Q Consensus 379 DEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~ 458 (787)
||||++.+++|...+..++..+++..|++++|||+++.+..++..++.+|..+.+.........+.+.+..+.....+..
T Consensus 169 DEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (394)
T 1fuu_A 169 DEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYE 248 (394)
T ss_dssp ETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC-----------------------
T ss_pred EChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHHH
Confidence 99999999999999999999999999999999999999999999999999988877666555666666665555444666
Q ss_pred HHHHhcCCcCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCC
Q 003910 459 WLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKS 538 (787)
Q Consensus 459 ~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~ 538 (787)
.+..++... ..+++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 249 ~l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~ 327 (394)
T 1fuu_A 249 CLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQ 327 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhcC-CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCccc
Confidence 666655443 4579999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEccccHHHHHHHHHHHHHcCCCccHHHH
Q 003910 539 IKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELM 602 (787)
Q Consensus 539 v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~l~~~~~~vp~~l~ 602 (787)
+++||+|++|+++..|+||+||+||.| +.|.|++|+++.+...+..+.+.+...-..+|..+.
T Consensus 328 ~~~Vi~~~~p~s~~~~~Qr~GR~~R~g-~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 390 (394)
T 1fuu_A 328 VSLVINYDLPANKENYIHRIGRGGRFG-RKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIA 390 (394)
T ss_dssp ----------------------------------------------------------------
T ss_pred CCEEEEeCCCCCHHHHHHHcCcccCCC-CCceEEEEEchhHHHHHHHHHHHhCCcccccCcchh
Confidence 999999999999999999999999999 679999999999998888888877666666666544
No 8
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=4.8e-52 Score=461.79 Aligned_cols=356 Identities=30% Similarity=0.524 Sum_probs=314.6
Q ss_pred CccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC--CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCC
Q 003910 222 RPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGP 299 (787)
Q Consensus 222 ~pi~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~g--rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p 299 (787)
+...+|++++|++.+++.|.+.+|..|+|+|.++++.++.+ +++|+++|||+|||++|++|++.++... ..++
T Consensus 2 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-----~~~~ 76 (395)
T 3pey_A 2 AMAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE-----DASP 76 (395)
T ss_dssp --CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT-----CCSC
T ss_pred ccccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccC-----CCCc
Confidence 34688999999999999999999999999999999999998 9999999999999999999999887432 3467
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEe
Q 003910 300 IGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLD 379 (787)
Q Consensus 300 ~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViD 379 (787)
++|||+||++|+.|+++.++++....++.+..++++...... ..+++|+|+||++|..++......+.++++||||
T Consensus 77 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiD 152 (395)
T 3pey_A 77 QAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLD 152 (395)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEE
T ss_pred cEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEE
Confidence 899999999999999999999988888888888887654332 2368999999999999998888889999999999
Q ss_pred chhhhhc-CCChHHHHHHhhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcchHH
Q 003910 380 EADRMFD-LGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLP 458 (787)
Q Consensus 380 Eah~m~~-~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~ 458 (787)
|||++.+ .++...+..++..+++..|+++||||+++.+..++..++.++..+.+.........+.+.+..+.....+..
T Consensus 153 Eah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (395)
T 3pey_A 153 EADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFD 232 (395)
T ss_dssp THHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHH
T ss_pred ChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHH
Confidence 9999988 678888889999999999999999999999999999999999888877776667777777777766666777
Q ss_pred HHHHhcCCcCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCC
Q 003910 459 WLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKS 538 (787)
Q Consensus 459 ~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~ 538 (787)
.+..++... ..+++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 233 ~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~ 311 (395)
T 3pey_A 233 VLTELYGLM-TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPT 311 (395)
T ss_dssp HHHHHHTTT-TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTT
T ss_pred HHHHHHHhc-cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCccc
Confidence 776666543 5679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEecCCC------CHHHHHHHhhccCCCCCCCcEEEEEEccccHH-HHHHHHH
Q 003910 539 IKSVVNFDIAR------DMDMHVHRIGRTGRAGDKDGTAYTLVTQKEAR-FAGELVN 588 (787)
Q Consensus 539 v~~VI~~d~p~------s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~-~~~~l~~ 588 (787)
+++||+||+|+ ++..|+||+||+||.| +.|.|++|+...+.. .+..+.+
T Consensus 312 ~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g-~~g~~~~~~~~~~~~~~~~~i~~ 367 (395)
T 3pey_A 312 VSMVVNYDLPTLANGQADPATYIHRIGRTGRFG-RKGVAISFVHDKNSFNILSAIQK 367 (395)
T ss_dssp EEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTT-CCEEEEEEECSHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCCcCCCCHHHhhHhccccccCC-CCceEEEEEechHHHHHHHHHHH
Confidence 99999999999 9999999999999999 679999999876543 3333333
No 9
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=3.5e-52 Score=466.20 Aligned_cols=369 Identities=29% Similarity=0.453 Sum_probs=321.5
Q ss_pred CCccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC--CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCC
Q 003910 221 PRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEG 298 (787)
Q Consensus 221 P~pi~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~g--rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~ 298 (787)
+.++.+|+++++++.+++.|.+.||..|+|+|.++++.++.+ +++|+++|||+|||++|++|++.++... ..+
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-----~~~ 95 (412)
T 3fht_A 21 LYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-----NKY 95 (412)
T ss_dssp TCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT-----SCS
T ss_pred ccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhc-----CCC
Confidence 356789999999999999999999999999999999999997 9999999999999999999999887543 346
Q ss_pred CEEEEEcCcHHHHHHHHHHHHHHhhhc-CceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHh-ccccccceeEE
Q 003910 299 PIGVICAPTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM-KALTMSRVTYL 376 (787)
Q Consensus 299 p~vLIl~PtreLa~Qi~~~~~~~~~~~-~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~-~~~~l~~i~~l 376 (787)
+++|||+||++|+.|+++.++++.... ++.+.+..++....... ...++|+|+||++|.+++.. ..+.+.++++|
T Consensus 96 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~i 172 (412)
T 3fht_A 96 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVF 172 (412)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCSSCGGGCCEE
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhh---cCCCCEEEECchHHHHHHHhcCCcChhhCcEE
Confidence 689999999999999999999997653 57788888776544321 33579999999999998865 56677899999
Q ss_pred EEechhhhhc-CCChHHHHHHhhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcc
Q 003910 377 VLDEADRMFD-LGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAE 455 (787)
Q Consensus 377 ViDEah~m~~-~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~ 455 (787)
||||||++.+ .++...+..++..+++..|+++||||+++.+..++..++.++..+.+.........+.+.+..+.....
T Consensus 173 ViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (412)
T 3fht_A 173 VLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE 252 (412)
T ss_dssp EEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHH
T ss_pred EEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChHH
Confidence 9999999987 678888999999999999999999999999999999999999998887777777788888887776667
Q ss_pred hHHHHHHhcCCcCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCC
Q 003910 456 KLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLD 535 (787)
Q Consensus 456 k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlD 535 (787)
+...+..++... ..+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+++|||||+++++|||
T Consensus 253 ~~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 331 (412)
T 3fht_A 253 KFQALCNLYGAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGID 331 (412)
T ss_dssp HHHHHHHHHHHH-SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCC
T ss_pred HHHHHHHHHhhc-CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCC
Confidence 777777766543 4569999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEecCCC------CHHHHHHHhhccCCCCCCCcEEEEEEcccc-HHHHHHHHHHHHHcCCCccH
Q 003910 536 IKSIKSVVNFDIAR------DMDMHVHRIGRTGRAGDKDGTAYTLVTQKE-ARFAGELVNSLIAAGQNVSM 599 (787)
Q Consensus 536 ip~v~~VI~~d~p~------s~~~y~QriGR~gR~G~~~G~~i~l~~~~d-~~~~~~l~~~l~~~~~~vp~ 599 (787)
+|++++||+||+|+ +...|+||+||+||.| +.|.|++|+++.+ ...+..+.+.+...-..++.
T Consensus 332 ip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g-~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 401 (412)
T 3fht_A 332 VEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFG-KRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDT 401 (412)
T ss_dssp CTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTT-CCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC--
T ss_pred ccCCCEEEEECCCCCCCCCcchheeecccCcccCCC-CCceEEEEEcChhhHHHHHHHHHHHCCccccCCC
Confidence 99999999999995 6789999999999999 6799999998765 66777777766555455543
No 10
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=2.7e-52 Score=489.17 Aligned_cols=366 Identities=31% Similarity=0.465 Sum_probs=310.3
Q ss_pred ccCCccccC----CCHHHHHHHHHCCCCCCcHHHHHHHHHHH--cCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccC
Q 003910 223 PVKTFEDCG----FSTQLMHAISKQGYEKPTSIQCQALPIIL--SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKE 296 (787)
Q Consensus 223 pi~sf~~~~----l~~~l~~~l~~~g~~~ptp~Q~~ai~~il--~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~ 296 (787)
+..+|.++. |++.+++.|.+.||..|||+|.++|+.++ .++++|+++|||+|||++|++|++.++..... ...
T Consensus 15 ~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~-~~~ 93 (579)
T 3sqw_A 15 KEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF-DSQ 93 (579)
T ss_dssp CCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT-SST
T ss_pred CCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccc-ccc
Confidence 334555553 99999999999999999999999999999 78899999999999999999999999876532 123
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHHHhhh----cCceEEEEECCCChHHHHHHHhc-CCcEEEeCHHHHHHHHHhc-cccc
Q 003910 297 EGPIGVICAPTRELAHQIYLETKKFAKS----HGIRVSAVYGGMSKLDQFKELKA-GCEIVIATPGRLIDMLKMK-ALTM 370 (787)
Q Consensus 297 ~~p~vLIl~PtreLa~Qi~~~~~~~~~~----~~i~v~~~~gg~~~~~~~~~l~~-~~dIIV~Tp~~L~~~l~~~-~~~l 370 (787)
.++++|||+||++||.|+++.+++++.. ..+.+..++||.....++..+.. +++|||+||++|++++... ...+
T Consensus 94 ~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~ 173 (579)
T 3sqw_A 94 YMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFF 173 (579)
T ss_dssp TSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhcccccc
Confidence 4678999999999999999999998743 35778889999988888777754 7999999999999988764 4567
Q ss_pred cceeEEEEechhhhhcCCChHHHHHHhhhcC-------CCceEEEEeccCcHHHHHHHHHHhCCCeEEEecccc----cc
Q 003910 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIR-------PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVG----MA 439 (787)
Q Consensus 371 ~~i~~lViDEah~m~~~~f~~~i~~il~~~~-------~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~----~~ 439 (787)
..+.+|||||||+|++++|...+..++..++ +.+|+++||||+++.+..++..++.++..+.+.... ..
T Consensus 174 ~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~ 253 (579)
T 3sqw_A 174 RFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEA 253 (579)
T ss_dssp TTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSS
T ss_pred ccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCcccccc
Confidence 8899999999999999999999988887653 377999999999999999999999998777664422 23
Q ss_pred cccceEEEEecCCCcchHHHH----HHhcCCcCCCCCEEEEecccccHHHHHHHHHHc---CCceeeccCCCCHHHHHHH
Q 003910 440 NEDITQVVHVIPSDAEKLPWL----LEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK---GFKAAALHGDKDQASRMEI 512 (787)
Q Consensus 440 ~~~i~q~~~~~~~~~~k~~~L----~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~---g~~v~~lhg~~~~~eR~~~ 512 (787)
...+.+.+........+...+ ...+.......++||||+++..++.++..|... ++.+..+||+|++.+|..+
T Consensus 254 ~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~ 333 (579)
T 3sqw_A 254 HERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSL 333 (579)
T ss_dssp CTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHH
T ss_pred ccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHH
Confidence 345556655554433333333 333333334679999999999999999999987 8999999999999999999
Q ss_pred HHHhhcCCccEEEEehhhhccCCCCCccEEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEccccHHHHHHHHHHH
Q 003910 513 LQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSL 590 (787)
Q Consensus 513 l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~l 590 (787)
++.|++|+++|||||+++++|||+|+|++||+|++|+++..|+||+||+||.| +.|.|++|+++.+..++..+.+..
T Consensus 334 ~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g-~~g~~i~~~~~~e~~~~~~l~~~~ 410 (579)
T 3sqw_A 334 VKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSG-KEGSSVLFICKDELPFVRELEDAK 410 (579)
T ss_dssp HHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTT-CCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred HHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCC-CCceEEEEEcccHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999 689999999999998888776654
No 11
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.4e-51 Score=451.49 Aligned_cols=355 Identities=35% Similarity=0.614 Sum_probs=318.0
Q ss_pred cCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC-CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEE
Q 003910 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSG-RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV 302 (787)
Q Consensus 224 i~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~g-rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vL 302 (787)
..+|++++|++.+++.|.+.||.+|+|+|.++++.++++ +++++++|||+|||++|++|++..+.. ..++++|
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~------~~~~~~l 78 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE------NNGIEAI 78 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS------SSSCCEE
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc------cCCCcEE
Confidence 457999999999999999999999999999999999988 699999999999999999999887643 2467899
Q ss_pred EEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechh
Q 003910 303 ICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD 382 (787)
Q Consensus 303 Il~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah 382 (787)
||+||++|+.||++.+.++....++.+..++|+.....+...+. .++|+|+||++|...+......+.++++|||||||
T Consensus 79 il~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah 157 (367)
T 1hv8_A 79 ILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEAD 157 (367)
T ss_dssp EECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHH
T ss_pred EEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCch
Confidence 99999999999999999999888899999999988877766655 69999999999999998877788999999999999
Q ss_pred hhhcCCChHHHHHHhhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcchHHHHHH
Q 003910 383 RMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLE 462 (787)
Q Consensus 383 ~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L~~ 462 (787)
++.+++|...+..++..+++..+++++|||+++.+..++..++.++..+.... ...+.+.+..+ ....+...+..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~l~~ 232 (367)
T 1hv8_A 158 EMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI----NANIEQSYVEV-NENERFEALCR 232 (367)
T ss_dssp HHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS----SSSSEEEEEEC-CGGGHHHHHHH
T ss_pred HhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC----CCCceEEEEEe-ChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988876655432 23455555544 44577888888
Q ss_pred hcCCcCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEE
Q 003910 463 KLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSV 542 (787)
Q Consensus 463 ~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~V 542 (787)
.+.. ...++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++|
T Consensus 233 ~l~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~V 310 (367)
T 1hv8_A 233 LLKN--KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCV 310 (367)
T ss_dssp HHCS--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEE
T ss_pred HHhc--CCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEE
Confidence 7763 46699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEccccHHHHHHHHHHHHHc
Q 003910 543 VNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAA 593 (787)
Q Consensus 543 I~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~l~~~ 593 (787)
|+|++|+++..|+||+||+||.| +.|.|++++++.+...+..+.+.+...
T Consensus 311 i~~~~~~s~~~~~Q~~GR~~R~g-~~g~~~~~~~~~~~~~~~~i~~~~~~~ 360 (367)
T 1hv8_A 311 INYHLPQNPESYMHRIGRTGRAG-KKGKAISIINRREYKKLRYIERAMKLK 360 (367)
T ss_dssp EESSCCSCHHHHHHHSTTTCCSS-SCCEEEEEECTTSHHHHHHHHHHHTCC
T ss_pred EEecCCCCHHHhhhcccccccCC-CccEEEEEEcHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999 679999999999999888887776443
No 12
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=4.2e-52 Score=486.02 Aligned_cols=364 Identities=31% Similarity=0.468 Sum_probs=307.7
Q ss_pred CCccccC----CCHHHHHHHHHCCCCCCcHHHHHHHHHHH--cCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCC
Q 003910 225 KTFEDCG----FSTQLMHAISKQGYEKPTSIQCQALPIIL--SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEG 298 (787)
Q Consensus 225 ~sf~~~~----l~~~l~~~l~~~g~~~ptp~Q~~ai~~il--~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~ 298 (787)
.+|.++. |++.+++.|.+.||..|||+|.++|+.++ .++|+|+++|||+|||++|++|++.++...... ...+
T Consensus 68 ~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~-~~~~ 146 (563)
T 3i5x_A 68 VTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD-SQYM 146 (563)
T ss_dssp CCHHHHHHTTSSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS-STTS
T ss_pred cCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc-ccCC
Confidence 3455543 99999999999999999999999999999 678999999999999999999999998765321 2345
Q ss_pred CEEEEEcCcHHHHHHHHHHHHHHhhh----cCceEEEEECCCChHHHHHHHh-cCCcEEEeCHHHHHHHHHhc-cccccc
Q 003910 299 PIGVICAPTRELAHQIYLETKKFAKS----HGIRVSAVYGGMSKLDQFKELK-AGCEIVIATPGRLIDMLKMK-ALTMSR 372 (787)
Q Consensus 299 p~vLIl~PtreLa~Qi~~~~~~~~~~----~~i~v~~~~gg~~~~~~~~~l~-~~~dIIV~Tp~~L~~~l~~~-~~~l~~ 372 (787)
+++|||+||++||.|+++.+++++.. ..+.+..++||.....++..+. .+++|||+||++|.+++... ...+..
T Consensus 147 ~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~ 226 (563)
T 3i5x_A 147 VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRF 226 (563)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTT
T ss_pred eeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhcccccccc
Confidence 78999999999999999999998653 2467888999988887777764 47999999999999988764 345788
Q ss_pred eeEEEEechhhhhcCCChHHHHHHhhhcC-------CCceEEEEeccCcHHHHHHHHHHhCCCeEEEecccc----cccc
Q 003910 373 VTYLVLDEADRMFDLGFEPQIRSIVGQIR-------PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVG----MANE 441 (787)
Q Consensus 373 i~~lViDEah~m~~~~f~~~i~~il~~~~-------~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~----~~~~ 441 (787)
+++|||||||+|++++|...+..++..++ +.+|+++||||+++.+..++..++.++..+.+.... ....
T Consensus 227 ~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (563)
T 3i5x_A 227 VDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHE 306 (563)
T ss_dssp CCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCT
T ss_pred ceEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccc
Confidence 99999999999999999999988876653 478999999999999999999999998777664332 2334
Q ss_pred cceEEEEecCCCcchHHHHH----HhcCCcCCCCCEEEEecccccHHHHHHHHHHc---CCceeeccCCCCHHHHHHHHH
Q 003910 442 DITQVVHVIPSDAEKLPWLL----EKLPGMIDDGDVLVFASKKTTVDEIESQLAQK---GFKAAALHGDKDQASRMEILQ 514 (787)
Q Consensus 442 ~i~q~~~~~~~~~~k~~~L~----~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~---g~~v~~lhg~~~~~eR~~~l~ 514 (787)
.+.+.+........+...++ ..+.......++||||+++..++.++..|... ++.+..+||+|++.+|..+++
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~ 386 (563)
T 3i5x_A 307 RIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVK 386 (563)
T ss_dssp TEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHH
T ss_pred cCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHH
Confidence 55566655544333333333 33333345679999999999999999999987 899999999999999999999
Q ss_pred HhhcCCccEEEEehhhhccCCCCCccEEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEccccHHHHHHHHHHH
Q 003910 515 KFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSL 590 (787)
Q Consensus 515 ~F~~G~~~VLVaT~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~l 590 (787)
.|++|+++|||||+++++|||+|+|++||+||+|.++..|+||+||+||.| +.|.|++|+++.+..++..+.+.+
T Consensus 387 ~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g-~~g~~i~~~~~~e~~~~~~l~~~~ 461 (563)
T 3i5x_A 387 RFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSG-KEGSSVLFICKDELPFVRELEDAK 461 (563)
T ss_dssp HHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTT-CCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred HHhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCC-CCceEEEEEchhHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999 689999999999988887776654
No 13
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=3e-53 Score=486.00 Aligned_cols=366 Identities=30% Similarity=0.461 Sum_probs=178.6
Q ss_pred ccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC--CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCE
Q 003910 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPI 300 (787)
Q Consensus 223 pi~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~g--rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~ 300 (787)
++.+|.+++|++.+++.|.+.||..|+|+|.++|+.++.+ +++|++++||||||++|++|++.++... ..+++
T Consensus 90 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~-----~~~~~ 164 (479)
T 3fmp_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-----NKYPQ 164 (479)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTT-----SCSCC
T ss_pred CcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhc-----CCCCc
Confidence 4678999999999999999999999999999999999987 9999999999999999999999877443 34668
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhhc-CceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHh-ccccccceeEEEE
Q 003910 301 GVICAPTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM-KALTMSRVTYLVL 378 (787)
Q Consensus 301 vLIl~PtreLa~Qi~~~~~~~~~~~-~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~-~~~~l~~i~~lVi 378 (787)
+|||+||++|+.|+++.++++.... ++.+.+.+++....... ...++|||+||++|++++.. ..+.+.++.+|||
T Consensus 165 ~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iVi 241 (479)
T 3fmp_B 165 CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVL 241 (479)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEE
T ss_pred EEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccc---cCCCCEEEECchHHHHHHHhcCCcCcccCCEEEE
Confidence 9999999999999999999987653 57777777766543221 23579999999999999865 4567789999999
Q ss_pred echhhhhc-CCChHHHHHHhhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcchH
Q 003910 379 DEADRMFD-LGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKL 457 (787)
Q Consensus 379 DEah~m~~-~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~ 457 (787)
||||+|++ .+|...+..++..+++.+|+++||||+++.+..++..++.+|..+.+.........+.+.+..+.....+.
T Consensus 242 DEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (479)
T 3fmp_B 242 DEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKF 321 (479)
T ss_dssp CCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC-----------------------
T ss_pred ECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHHH
Confidence 99999987 67888888999999999999999999999999999999999999988777777777888777776666677
Q ss_pred HHHHHhcCCcCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCC
Q 003910 458 PWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIK 537 (787)
Q Consensus 458 ~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip 537 (787)
..|..++... ..+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+++|||||+++++|||+|
T Consensus 322 ~~l~~~~~~~-~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip 400 (479)
T 3fmp_B 322 QALCNLYGAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVE 400 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhhc-cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccc
Confidence 6666665543 456999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEecCCC------CHHHHHHHhhccCCCCCCCcEEEEEEcccc-HHHHHHHHHHHHHcCCCcc
Q 003910 538 SIKSVVNFDIAR------DMDMHVHRIGRTGRAGDKDGTAYTLVTQKE-ARFAGELVNSLIAAGQNVS 598 (787)
Q Consensus 538 ~v~~VI~~d~p~------s~~~y~QriGR~gR~G~~~G~~i~l~~~~d-~~~~~~l~~~l~~~~~~vp 598 (787)
++++||+||+|+ +...|+||+||+||.| +.|.|++|+++.+ ..++..+.+.+...-..++
T Consensus 401 ~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g-~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~ 467 (479)
T 3fmp_B 401 QVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFG-KRGLAVNMVDSKHSMNILNRIQEHFNKKIERLD 467 (479)
T ss_dssp --------------------------------------------------------------------
T ss_pred cCCEEEEecCCCCCccCCCHHHHHHHhcccccCC-CCceEEEEEcCcchHHHHHHHHHHhCCCceECC
Confidence 999999999995 5689999999999999 6899999998765 6666666666544444443
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.8e-49 Score=430.18 Aligned_cols=335 Identities=32% Similarity=0.574 Sum_probs=291.2
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHH
Q 003910 232 FSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELA 311 (787)
Q Consensus 232 l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa 311 (787)
|++.+.+.|.+.||..|+|+|.++++.+++++++++++|||+|||++|++|++.. ++++|||+||++|+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~-----------~~~~liv~P~~~L~ 69 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL-----------GMKSLVVTPTRELT 69 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH-----------TCCEEEECSSHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh-----------cCCEEEEeCCHHHH
Confidence 5788999999999999999999999999999999999999999999999998763 45699999999999
Q ss_pred HHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChH
Q 003910 312 HQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEP 391 (787)
Q Consensus 312 ~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~ 391 (787)
.||++.++++....++.+..++|+.....+...+. .++|+|+||++|...+....+.+..+++|||||||++.+++|..
T Consensus 70 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~ 148 (337)
T 2z0m_A 70 RQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFID 148 (337)
T ss_dssp HHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHH
T ss_pred HHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHH
Confidence 99999999998888899999999988877666554 49999999999999988877788999999999999999999999
Q ss_pred HHHHHhhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcchHHHHHHhcCCcCCCC
Q 003910 392 QIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDG 471 (787)
Q Consensus 392 ~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~ 471 (787)
.+..++..++...++++||||+++.+..++..++.++..+... .....+.+.+..+.... ...+..+.. ...+
T Consensus 149 ~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~ 221 (337)
T 2z0m_A 149 DIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDDW---RSKVQALRE-NKDK 221 (337)
T ss_dssp HHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSSS---HHHHHHHHT-CCCS
T ss_pred HHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChHH---HHHHHHHHh-CCCC
Confidence 9999999999999999999999999999999999988766432 23345555555554322 222233332 2457
Q ss_pred CEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEEEecCCCCH
Q 003910 472 DVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDM 551 (787)
Q Consensus 472 kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~~d~p~s~ 551 (787)
++||||+++..++.+++.|. .+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+|++|+++
T Consensus 222 ~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~ 297 (337)
T 2z0m_A 222 GVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDL 297 (337)
T ss_dssp SEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSH
T ss_pred cEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCH
Confidence 99999999999999999886 58899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCCCCCcEEEEEEccccHHHHHHHHHHHH
Q 003910 552 DMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLI 591 (787)
Q Consensus 552 ~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~l~ 591 (787)
..|+||+||+||.| +.|.|++|+. .+......+.+.+.
T Consensus 298 ~~~~Q~~GR~gR~g-~~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 298 RTYIHRIGRTGRMG-RKGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp HHHHHHHTTBCGGG-CCEEEEEEES-SCHHHHHHHC----
T ss_pred HHhhHhcCccccCC-CCceEEEEEe-CcHHHHHHHHHHhc
Confidence 99999999999999 6799999999 88777777766653
No 15
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=8.8e-48 Score=448.94 Aligned_cols=348 Identities=18% Similarity=0.300 Sum_probs=286.5
Q ss_pred ccCCcc--ccCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCC
Q 003910 223 PVKTFE--DCGFSTQLMHAISK-QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGP 299 (787)
Q Consensus 223 pi~sf~--~~~l~~~l~~~l~~-~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p 299 (787)
....|. ++++++.+.+.|++ .||..|+|+|.++|+.++.++|+|+++|||+|||++|++|++.. .+
T Consensus 17 ~~~~w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~-----------~g 85 (591)
T 2v1x_A 17 SPAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS-----------DG 85 (591)
T ss_dssp CGGGGCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS-----------SS
T ss_pred chhccccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc-----------CC
Confidence 334444 47888999999998 59999999999999999999999999999999999999999752 35
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHH---H---hcCCcEEEeCHHHHHH---HHH--hccc
Q 003910 300 IGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE---L---KAGCEIVIATPGRLID---MLK--MKAL 368 (787)
Q Consensus 300 ~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~---l---~~~~dIIV~Tp~~L~~---~l~--~~~~ 368 (787)
.+|||+|+++|+.|+++.+.++ ++.+.++.++....+.... + ...++|||+||++|.. ++. ....
T Consensus 86 ~~lVisP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~ 161 (591)
T 2v1x_A 86 FTLVICPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAY 161 (591)
T ss_dssp EEEEECSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHH
T ss_pred cEEEEeCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhh
Confidence 7999999999999999999887 8899999998876654322 2 3468999999998742 221 1244
Q ss_pred cccceeEEEEechhhhhcCC--ChHHHHH--HhhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccce
Q 003910 369 TMSRVTYLVLDEADRMFDLG--FEPQIRS--IVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDIT 444 (787)
Q Consensus 369 ~l~~i~~lViDEah~m~~~~--f~~~i~~--il~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~ 444 (787)
.+..+.+|||||||++.+|+ |.+.+.. ++....+..++|+||||+++.+...+..++..+..+.+.. .....++.
T Consensus 162 ~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~-~~~r~nl~ 240 (591)
T 2v1x_A 162 EARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTA-SFNRPNLY 240 (591)
T ss_dssp HTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC-CCCCTTEE
T ss_pred hccCCcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec-CCCCcccE
Confidence 57789999999999999988 7777654 4555567899999999999999888888887654333322 22333444
Q ss_pred EEEEecCC-CcchHHHHHHhcCCcCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccE
Q 003910 445 QVVHVIPS-DAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHV 523 (787)
Q Consensus 445 q~~~~~~~-~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~V 523 (787)
..+..... ...+...|++.+......+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+++|
T Consensus 241 ~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~V 320 (591)
T 2v1x_A 241 YEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQV 320 (591)
T ss_dssp EEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSE
T ss_pred EEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeE
Confidence 43333221 12345667777765556679999999999999999999999999999999999999999999999999999
Q ss_pred EEEehhhhccCCCCCccEEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEccccHHHHHHHH
Q 003910 524 LIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELV 587 (787)
Q Consensus 524 LVaT~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~ 587 (787)
||||+++++|||+|+|++||+|++|.+++.|+||+||+||.| ++|.|++|+++.|...+..++
T Consensus 321 lVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G-~~g~~i~l~~~~D~~~~~~~~ 383 (591)
T 2v1x_A 321 VVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDD-MKADCILYYGFGDIFRISSMV 383 (591)
T ss_dssp EEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTS-SCEEEEEEECHHHHHHHHHHT
T ss_pred EEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCC-CCceEEEEEChHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999 689999999998877666554
No 16
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-49 Score=459.45 Aligned_cols=371 Identities=29% Similarity=0.433 Sum_probs=267.2
Q ss_pred CCCCCccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC--CCEEEEccCCCchhHHHHHHHHHHHhcCccccc
Q 003910 218 FDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQK 295 (787)
Q Consensus 218 ~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~g--rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~ 295 (787)
.+.|.++..|...++++.+++.|.+.++..|+++|.++|+.++++ +++|++++||+|||++|+++++.++...
T Consensus 112 ~~~p~~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~----- 186 (508)
T 3fho_A 112 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDAS----- 186 (508)
T ss_dssp ---------------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTT-----
T ss_pred cccccccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhC-----
Confidence 344566667777889999999999999999999999999999998 9999999999999999999999887443
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeE
Q 003910 296 EEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTY 375 (787)
Q Consensus 296 ~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~ 375 (787)
..++++|||+|+++|+.|+++.+++++...++.+...+++..... ...+++|+|+||++|...+....+.+..+++
T Consensus 187 ~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~l 262 (508)
T 3fho_A 187 VPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG----AKIDAQIVIGTPGTVMDLMKRRQLDARDIKV 262 (508)
T ss_dssp CCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCE
T ss_pred CCCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCccccc----ccCCCCEEEECHHHHHHHHHcCCccccCCCE
Confidence 346689999999999999999999998777777766666543322 2336899999999999999888888999999
Q ss_pred EEEechhhhhc-CCChHHHHHHhhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCc
Q 003910 376 LVLDEADRMFD-LGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDA 454 (787)
Q Consensus 376 lViDEah~m~~-~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~ 454 (787)
|||||||++.+ .++...+..++..+++..|+|++|||+++.+..++..++.++..+.+.........+.+.+..+....
T Consensus 263 IIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 342 (508)
T 3fho_A 263 FVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEE 342 (508)
T ss_dssp EEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CH
T ss_pred EEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchH
Confidence 99999999987 67899999999999999999999999999999999999999988877766666667777777776666
Q ss_pred chHHHHHHhcCCcCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccC
Q 003910 455 EKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGL 534 (787)
Q Consensus 455 ~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGl 534 (787)
.+...+..++... ..+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+
T Consensus 343 ~k~~~l~~ll~~~-~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~Gi 421 (508)
T 3fho_A 343 HKYNVLVELYGLL-TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGI 421 (508)
T ss_dssp HHHHHHHHHHC----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----C
T ss_pred HHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCC
Confidence 6777777776654 567999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEecCC------CCHHHHHHHhhccCCCCCCCcEEEEEEcc-ccHHHHHHHHHHHHHcCCCccH
Q 003910 535 DIKSIKSVVNFDIA------RDMDMHVHRIGRTGRAGDKDGTAYTLVTQ-KEARFAGELVNSLIAAGQNVSM 599 (787)
Q Consensus 535 Dip~v~~VI~~d~p------~s~~~y~QriGR~gR~G~~~G~~i~l~~~-~d~~~~~~l~~~l~~~~~~vp~ 599 (787)
|+|++++||+|++| .++..|+||+||+||.| +.|.|++|+.. .+...+..+.+.+...-..++.
T Consensus 422 Dip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g-~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~ 492 (508)
T 3fho_A 422 DVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFG-RVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPT 492 (508)
T ss_dssp CCTTCCEEEC----CC-----CTHHHHHTTSCCC------CEEEEEECTTTSSSSHHHHHHHSCCCCC----
T ss_pred CccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCC-CCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCC
Confidence 99999999999999 78999999999999999 68999999985 4566666666666555555554
No 17
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=1.8e-47 Score=429.72 Aligned_cols=327 Identities=22% Similarity=0.289 Sum_probs=270.4
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHH
Q 003910 236 LMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIY 315 (787)
Q Consensus 236 l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~ 315 (787)
+.+.+++....+|+|+|.++++.+++++|+|+++|||+|||++|++|++..+ ..++++|||+||++|+.|++
T Consensus 10 ~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~--------~~~~~~lil~Pt~~L~~q~~ 81 (414)
T 3oiy_A 10 FRSFFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA--------RKGKKSALVFPTVTLVKQTL 81 (414)
T ss_dssp HHHHHHHHHSSCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH--------TTTCCEEEEESSHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh--------cCCCEEEEEECCHHHHHHHH
Confidence 4445555323379999999999999999999999999999999999988775 34678999999999999999
Q ss_pred HHHHHHhhhcCceEEEEECCCCh---HHHHHHHhcC-CcEEEeCHHHHHHHHHhccccccceeEEEEechhhhh------
Q 003910 316 LETKKFAKSHGIRVSAVYGGMSK---LDQFKELKAG-CEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF------ 385 (787)
Q Consensus 316 ~~~~~~~~~~~i~v~~~~gg~~~---~~~~~~l~~~-~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~------ 385 (787)
+.+++++. .++++..++|+... ..++..+..+ ++|+|+||++|.+++.. +.+..+++|||||||++.
T Consensus 82 ~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~~ 158 (414)
T 3oiy_A 82 ERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNI 158 (414)
T ss_dssp HHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHHH
T ss_pred HHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccchh
Confidence 99999987 78999999999988 5667777776 99999999999988764 667799999999998654
Q ss_pred ----c-CCChHH-HHHHhhhcC-----------CCceEEEEecc-CcHHHH-HHHHHHhCCCeEEEecccccccccceEE
Q 003910 386 ----D-LGFEPQ-IRSIVGQIR-----------PDRQTLLFSAT-MPRKVE-KLAREILSDPVRVTVGEVGMANEDITQV 446 (787)
Q Consensus 386 ----~-~~f~~~-i~~il~~~~-----------~~~q~ll~SAT-~~~~v~-~l~~~~l~~p~~i~v~~~~~~~~~i~q~ 446 (787)
+ ++|... +..++..++ +.+|+++|||| +|..+. .+...++. +.+.........+.+.
T Consensus 159 d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~ 234 (414)
T 3oiy_A 159 DTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHV 234 (414)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCCCCSEEEE
T ss_pred hhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCccccccccchhe
Confidence 4 788888 788888876 88999999999 665544 33444433 2223333445566666
Q ss_pred EEecCCCcchHHHHHHhcCCcCCCCCEEEEecccccHHHHHHHHHHcCCcee-eccCCCCHHHHHHHHHHhhcCCccEEE
Q 003910 447 VHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAA-ALHGDKDQASRMEILQKFKSGVYHVLI 525 (787)
Q Consensus 447 ~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~-~lhg~~~~~eR~~~l~~F~~G~~~VLV 525 (787)
+..+ .+...|..++.. ..+++||||+++..++.++..|...++.+. .+||. +|. ++.|++|+++|||
T Consensus 235 ~~~~----~~~~~l~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLv 302 (414)
T 3oiy_A 235 RISS----RSKEKLVELLEI--FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILI 302 (414)
T ss_dssp EESS----CCHHHHHHHHHH--HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEE
T ss_pred eecc----CHHHHHHHHHHH--cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEE
Confidence 6544 455566666655 247999999999999999999999999998 99995 444 9999999999999
Q ss_pred E----ehhhhccCCCCC-ccEEEEecCC--CCHHHHHHHhhccCCCCC---CCcEEEEEEccccHHHHHHHHHHHH
Q 003910 526 A----TDVAARGLDIKS-IKSVVNFDIA--RDMDMHVHRIGRTGRAGD---KDGTAYTLVTQKEARFAGELVNSLI 591 (787)
Q Consensus 526 a----T~v~~rGlDip~-v~~VI~~d~p--~s~~~y~QriGR~gR~G~---~~G~~i~l~~~~d~~~~~~l~~~l~ 591 (787)
| |+++++|||+|+ |++||+||+| .++..|+||+||+||.|. +.|.|++|+ .+...+..+.+.+.
T Consensus 303 at~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 303 GVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 376 (414)
T ss_dssp EECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred EecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhc
Confidence 9 999999999999 9999999999 999999999999999984 479999999 67777777777776
No 18
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=5.1e-46 Score=429.42 Aligned_cols=342 Identities=19% Similarity=0.329 Sum_probs=279.4
Q ss_pred cCCccccCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEE
Q 003910 224 VKTFEDCGFSTQLMHAISK-QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV 302 (787)
Q Consensus 224 i~sf~~~~l~~~l~~~l~~-~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vL 302 (787)
+.+|++++|++.+.+.|++ .||..|+|+|.++|+.+++++|+|+++|||+|||++|++|++.. .+.+|
T Consensus 1 ~~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~-----------~g~~l 69 (523)
T 1oyw_A 1 MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL-----------NGLTV 69 (523)
T ss_dssp CCCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS-----------SSEEE
T ss_pred CCChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh-----------CCCEE
Confidence 3579999999999999998 79999999999999999999999999999999999999998742 35689
Q ss_pred EEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHH---HHHh-cCCcEEEeCHHHHHHHHHhccccccceeEEEE
Q 003910 303 ICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF---KELK-AGCEIVIATPGRLIDMLKMKALTMSRVTYLVL 378 (787)
Q Consensus 303 Il~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~---~~l~-~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lVi 378 (787)
||+|+++|+.|+++.++++ ++.+.++.++....... ..+. ...+|+|+||++|........+...++.+|||
T Consensus 70 vi~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vVi 145 (523)
T 1oyw_A 70 VVSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAV 145 (523)
T ss_dssp EECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEE
T ss_pred EECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEE
Confidence 9999999999999998876 78888888887765433 2222 35899999999996432223344578999999
Q ss_pred echhhhhcCC--ChHHHHHHh--hhcCCCceEEEEeccCcHHHHHHHHHHh--CCCeEEEecccccccccceEEEEecCC
Q 003910 379 DEADRMFDLG--FEPQIRSIV--GQIRPDRQTLLFSATMPRKVEKLAREIL--SDPVRVTVGEVGMANEDITQVVHVIPS 452 (787)
Q Consensus 379 DEah~m~~~~--f~~~i~~il--~~~~~~~q~ll~SAT~~~~v~~l~~~~l--~~p~~i~v~~~~~~~~~i~q~~~~~~~ 452 (787)
||||++.+|+ |.+.+..+. ....+..+++++|||+++.+...+...+ .+|..+ +.. ....++...+..
T Consensus 146 DEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~-~~~--~~r~~l~~~v~~--- 219 (523)
T 1oyw_A 146 DEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISS--FDRPNIRYMLME--- 219 (523)
T ss_dssp SSGGGGCTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEE-ECC--CCCTTEEEEEEE---
T ss_pred eCccccCcCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEE-eCC--CCCCceEEEEEe---
Confidence 9999999987 666665442 2223578999999999988765444443 344433 322 223333333222
Q ss_pred CcchHHHHHHhcCCcCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhc
Q 003910 453 DAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAAR 532 (787)
Q Consensus 453 ~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~r 532 (787)
...+...|+..+... ...++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++
T Consensus 220 ~~~~~~~l~~~l~~~-~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~ 298 (523)
T 1oyw_A 220 KFKPLDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGM 298 (523)
T ss_dssp CSSHHHHHHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCT
T ss_pred CCCHHHHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhC
Confidence 245667777766543 4569999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccEEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEccccHHHHHHHHH
Q 003910 533 GLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVN 588 (787)
Q Consensus 533 GlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~ 588 (787)
|||+|++++||+|++|+++..|+||+||+||.| +.|.|++|+++.|...+..++.
T Consensus 299 GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g-~~~~~~l~~~~~d~~~~~~~~~ 353 (523)
T 1oyw_A 299 GINKPNVRFVVHFDIPRNIESYYQETGRAGRDG-LPAEAMLFYDPADMAWLRRCLE 353 (523)
T ss_dssp TTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTS-SCEEEEEEECHHHHHHHHHHHH
T ss_pred CCCccCccEEEEECCCCCHHHHHHHhccccCCC-CCceEEEEeCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999 6899999999998877766654
No 19
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=9e-46 Score=432.88 Aligned_cols=373 Identities=22% Similarity=0.258 Sum_probs=287.0
Q ss_pred cccCccccccccCCccccCCCHHHHHHHHHHcCceec-cCCCCCccCCccccCCCHHHHHHHH--------HCCCCCCcH
Q 003910 180 IDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVS-GFDVPRPVKTFEDCGFSTQLMHAIS--------KQGYEKPTS 250 (787)
Q Consensus 180 ~~~~~f~k~fy~~~~~i~~~s~~~~~~~~~~~~i~v~-g~~~P~pi~sf~~~~l~~~l~~~l~--------~~g~~~ptp 250 (787)
..|.++.+.++...+.+..|+.+++.....++...+. |. + |++.+.+++. ..|| .|||
T Consensus 20 k~~~~~~~~in~~~~~~~~lsd~el~~~t~~~~~~~~~g~-------~-----ld~~l~ea~a~vrea~~r~lG~-~pt~ 86 (844)
T 1tf5_A 20 NRYEKIANDIDAIRGDYENLSDDALKHKTIEFKERLEKGA-------T-----TDDLLVEAFAVVREASRRVTGM-FPFK 86 (844)
T ss_dssp CHHHHHHHHHHHTTHHHHTCCHHHHHHHHHHHHHHHHTTC-------C-----HHHHHHHHHHHHHHHHHHHHSC-CCCH
T ss_pred HHHHHHHHHHHhhhHHHHhCCHHHHHHHHHHHHHHHhcCC-------C-----hHHHHHHHHHHHHHHHHHHcCC-CCcH
Confidence 3466777788888899999999999887777654442 22 1 2222333332 4699 9999
Q ss_pred HHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEE
Q 003910 251 IQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVS 330 (787)
Q Consensus 251 ~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~ 330 (787)
+|..++|.+++|+ |+.++||+|||++|++|++.+.+ .++.++||+||++||.|+++++..++..+++++.
T Consensus 87 VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL--------~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~ 156 (844)
T 1tf5_A 87 VQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNAL--------TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVG 156 (844)
T ss_dssp HHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHT--------TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHH--------cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEE
Confidence 9999999999998 99999999999999999986543 2567999999999999999999999999999999
Q ss_pred EEECCCChHHHHHHHhcCCcEEEeCHHHH-HHHHHhc------cccccceeEEEEechhhhh-cCC--------------
Q 003910 331 AVYGGMSKLDQFKELKAGCEIVIATPGRL-IDMLKMK------ALTMSRVTYLVLDEADRMF-DLG-------------- 388 (787)
Q Consensus 331 ~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L-~~~l~~~------~~~l~~i~~lViDEah~m~-~~~-------------- 388 (787)
+++||.+...+ .+..++||+|+||++| ++++... .+.+..+.++||||||+|+ +++
T Consensus 157 ~i~gg~~~~~r--~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~ 234 (844)
T 1tf5_A 157 LNLNSMSKDEK--REAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKST 234 (844)
T ss_dssp ECCTTSCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCC
T ss_pred EEeCCCCHHHH--HHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccch
Confidence 99999876543 3345699999999999 6666532 4567899999999999998 764
Q ss_pred -ChHHHHHHhhhcC---------CCceEE-----------------EEeccCcH---HHHHHH--HHHhC-CCeEEE---
Q 003910 389 -FEPQIRSIVGQIR---------PDRQTL-----------------LFSATMPR---KVEKLA--REILS-DPVRVT--- 432 (787)
Q Consensus 389 -f~~~i~~il~~~~---------~~~q~l-----------------l~SAT~~~---~v~~l~--~~~l~-~p~~i~--- 432 (787)
|...+..|+..++ ..+|++ +||||++. .+...+ ..++. +...+.
T Consensus 235 ~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg 314 (844)
T 1tf5_A 235 KLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDG 314 (844)
T ss_dssp HHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETT
T ss_pred hHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEecC
Confidence 5678899999887 368888 99999874 343332 22332 111110
Q ss_pred ----ecc-----------------------------cccccccce-----------------------------------
Q 003910 433 ----VGE-----------------------------VGMANEDIT----------------------------------- 444 (787)
Q Consensus 433 ----v~~-----------------------------~~~~~~~i~----------------------------------- 444 (787)
+.. .......|.
T Consensus 315 ~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~ 394 (844)
T 1tf5_A 315 QVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVT 394 (844)
T ss_dssp EEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEE
T ss_pred eeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCceEE
Confidence 000 000000000
Q ss_pred -----------EEEEecCCCcchHHHHHHhcCCcC-CCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHH
Q 003910 445 -----------QVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEI 512 (787)
Q Consensus 445 -----------q~~~~~~~~~~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~ 512 (787)
+...+......|+..|+..+.... ...++||||++++.++.|+..|...|+++.+|||++.+.+|..+
T Consensus 395 IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii 474 (844)
T 1tf5_A 395 IPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQII 474 (844)
T ss_dssp CCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHH
T ss_pred ecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHH
Confidence 000111234567777777765432 34589999999999999999999999999999999988888766
Q ss_pred HHHhhcCCccEEEEehhhhccCCCC--------CccEEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEccccH
Q 003910 513 LQKFKSGVYHVLIATDVAARGLDIK--------SIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (787)
Q Consensus 513 l~~F~~G~~~VLVaT~v~~rGlDip--------~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~ 580 (787)
...|+.| .|||||++++||+||+ ++.+||||+.|.+...|+||+|||||+| .+|.+++|++..|.
T Consensus 475 ~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG-~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 475 EEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQG-DPGITQFYLSMEDE 547 (844)
T ss_dssp TTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGG-CCEEEEEEEETTSS
T ss_pred HHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCC-CCCeEEEEecHHHH
Confidence 6666665 6999999999999999 8889999999999999999999999999 68999999998774
No 20
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-45 Score=451.79 Aligned_cols=331 Identities=18% Similarity=0.202 Sum_probs=262.3
Q ss_pred CccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEc
Q 003910 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA 305 (787)
Q Consensus 226 sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~ 305 (787)
.|..+++++.+...+....+..|+|+|.++|+.++.++++|++|+||||||++|++|++..+. .++++||++
T Consensus 163 ~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~--------~g~rvlvl~ 234 (1108)
T 3l9o_A 163 NYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK--------NKQRVIYTS 234 (1108)
T ss_dssp CCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHH--------TTCEEEEEE
T ss_pred CcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHh--------cCCeEEEEc
Confidence 455566666665556666677899999999999999999999999999999999999998873 367899999
Q ss_pred CcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhh
Q 003910 306 PTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (787)
Q Consensus 306 PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~ 385 (787)
||++|+.|+++.+.+++. .+.+++|+.... .+++|+|+||++|.+++......+.++.+|||||||+|.
T Consensus 235 PtraLa~Q~~~~l~~~~~----~VglltGd~~~~-------~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~ 303 (1108)
T 3l9o_A 235 PIKALSNQKYRELLAEFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMR 303 (1108)
T ss_dssp SSHHHHHHHHHHHHHHTS----SEEEECSSCBCC-------CSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTT
T ss_pred CcHHHHHHHHHHHHHHhC----CccEEeCccccC-------CCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhcc
Confidence 999999999999999864 567788877643 358999999999999998877778999999999999999
Q ss_pred cCCChHHHHHHhhhcCCCceEEEEeccCcHH--HHHHHHHHhCCCeEEEecccccccccceEEEEe---------cCCC-
Q 003910 386 DLGFEPQIRSIVGQIRPDRQTLLFSATMPRK--VEKLAREILSDPVRVTVGEVGMANEDITQVVHV---------IPSD- 453 (787)
Q Consensus 386 ~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~--v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~---------~~~~- 453 (787)
+++|...+..++..+++.+|+|+||||+|+. +..++..+...|..+........ .+.+.+.. +...
T Consensus 304 d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~--pl~~~~~~~~~~~~~~~vd~~~ 381 (1108)
T 3l9o_A 304 DKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPT--PLQHYLFPAHGDGIYLVVDEKS 381 (1108)
T ss_dssp SHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSS--CEEEEEEETTSSCCEEEEETTT
T ss_pred ccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcc--cceEEEeecCCcceeeeecccc
Confidence 9999999999999999999999999999874 44556666666665554332211 11111111 0000
Q ss_pred --------------------------------------------cchHHHHHHhcCCcCCCCCEEEEecccccHHHHHHH
Q 003910 454 --------------------------------------------AEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQ 489 (787)
Q Consensus 454 --------------------------------------------~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~ 489 (787)
..++..++..+.. ...+++||||+++..|+.++..
T Consensus 382 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~-~~~~~vIVF~~sr~~~e~la~~ 460 (1108)
T 3l9o_A 382 TFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWK-KKYNPVIVFSFSKRDCEELALK 460 (1108)
T ss_dssp EECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHH-TTCCCEEEEESCHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHh-cCCCCEEEEeCcHHHHHHHHHH
Confidence 1112223333322 1345899999999999999999
Q ss_pred HHHcCCc---------------------------------------eeeccCCCCHHHHHHHHHHhhcCCccEEEEehhh
Q 003910 490 LAQKGFK---------------------------------------AAALHGDKDQASRMEILQKFKSGVYHVLIATDVA 530 (787)
Q Consensus 490 L~~~g~~---------------------------------------v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~ 530 (787)
|...++. +..+||+|++.+|..++..|++|.++|||||+++
T Consensus 461 L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vl 540 (1108)
T 3l9o_A 461 MSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETF 540 (1108)
T ss_dssp TCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCC
T ss_pred HHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHH
Confidence 8653222 7899999999999999999999999999999999
Q ss_pred hccCCCCCccEEEEecCC--------CCHHHHHHHhhccCCCC-CCCcEEEEEEccc
Q 003910 531 ARGLDIKSIKSVVNFDIA--------RDMDMHVHRIGRTGRAG-DKDGTAYTLVTQK 578 (787)
Q Consensus 531 ~rGlDip~v~~VI~~d~p--------~s~~~y~QriGR~gR~G-~~~G~~i~l~~~~ 578 (787)
++|||+|++++||+++.| .++..|+||+|||||.| ...|.||+++.+.
T Consensus 541 a~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 541 SIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp CSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred hcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 999999999999977664 37788999999999998 3479999998775
No 21
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=7.5e-45 Score=422.99 Aligned_cols=330 Identities=20% Similarity=0.219 Sum_probs=207.5
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhh
Q 003910 245 YEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS 324 (787)
Q Consensus 245 ~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~ 324 (787)
..+|+|+|.+++++++.++++|++++||+|||++|++|++..+...+. ..++++|||+||++|+.||++++++++..
T Consensus 5 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~---~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 81 (556)
T 4a2p_A 5 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA---GRKAKVVFLATKVPVYEQQKNVFKHHFER 81 (556)
T ss_dssp ---CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS---SCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcc---cCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 467999999999999999999999999999999999999998866431 23678999999999999999999999998
Q ss_pred cCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccc-cccceeEEEEechhhhhcCCChHHHH-HHhhh---
Q 003910 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKAL-TMSRVTYLVLDEADRMFDLGFEPQIR-SIVGQ--- 399 (787)
Q Consensus 325 ~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~-~l~~i~~lViDEah~m~~~~f~~~i~-~il~~--- 399 (787)
.++++..++|+.....++..+..+++|+|+||++|.+.+....+ .+..+++|||||||++.++++...+. .++..
T Consensus 82 ~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~ 161 (556)
T 4a2p_A 82 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFN 161 (556)
T ss_dssp GTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHC
T ss_pred cCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhhc
Confidence 89999999999987777777777899999999999999988776 78999999999999998876433332 22221
Q ss_pred -cCCCceEEEEeccCcH-----------HHHHHHHHH------------------hCCCeEEEeccccccccc-------
Q 003910 400 -IRPDRQTLLFSATMPR-----------KVEKLAREI------------------LSDPVRVTVGEVGMANED------- 442 (787)
Q Consensus 400 -~~~~~q~ll~SAT~~~-----------~v~~l~~~~------------------l~~p~~i~v~~~~~~~~~------- 442 (787)
..+..|+|+||||++. .+..+...+ ...|....+.........
T Consensus 162 ~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (556)
T 4a2p_A 162 SASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISN 241 (556)
T ss_dssp C---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHH
T ss_pred ccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHHH
Confidence 1456899999999842 222222222 122221111000000000
Q ss_pred -----------ceE---E----------------E---------------------------------------------
Q 003910 443 -----------ITQ---V----------------V--------------------------------------------- 447 (787)
Q Consensus 443 -----------i~q---~----------------~--------------------------------------------- 447 (787)
+.. . +
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 321 (556)
T 4a2p_A 242 LMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDA 321 (556)
T ss_dssp HHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 000 0 0
Q ss_pred -------------------------------------------EecCCCcchHHHHHHhcCCc---CCCCCEEEEecccc
Q 003910 448 -------------------------------------------HVIPSDAEKLPWLLEKLPGM---IDDGDVLVFASKKT 481 (787)
Q Consensus 448 -------------------------------------------~~~~~~~~k~~~L~~~L~~~---~~~~kvLVF~~s~~ 481 (787)
........|...|.++|... ....++||||+++.
T Consensus 322 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~ 401 (556)
T 4a2p_A 322 RIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRA 401 (556)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHH
T ss_pred hHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHH
Confidence 00000234555666666443 34679999999999
Q ss_pred cHHHHHHHHHHc------------CCceeeccCCCCHHHHHHHHHHhhc-CCccEEEEehhhhccCCCCCccEEEEecCC
Q 003910 482 TVDEIESQLAQK------------GFKAAALHGDKDQASRMEILQKFKS-GVYHVLIATDVAARGLDIKSIKSVVNFDIA 548 (787)
Q Consensus 482 ~a~~l~~~L~~~------------g~~v~~lhg~~~~~eR~~~l~~F~~-G~~~VLVaT~v~~rGlDip~v~~VI~~d~p 548 (787)
.++.|++.|... |..+..+||+|++.+|..+++.|++ |.++|||||+++++|||+|+|++||+||+|
T Consensus 402 ~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p 481 (556)
T 4a2p_A 402 LVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYS 481 (556)
T ss_dssp HHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEETCC
T ss_pred HHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCC
Confidence 999999999875 4555666778999999999999999 999999999999999999999999999999
Q ss_pred CCHHHHHHHhhccCCCCCCCcEEEEEEccccH
Q 003910 549 RDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (787)
Q Consensus 549 ~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~ 580 (787)
+++..|+||+|| ||. +.|.+|+|++..+.
T Consensus 482 ~s~~~~~Qr~GR-gR~--~~g~~~~l~~~~~~ 510 (556)
T 4a2p_A 482 GNVTKMIQVRGR-GRA--AGSKCILVTSKTEV 510 (556)
T ss_dssp SCHHHHHHC-----------CCEEEEESCHHH
T ss_pred CCHHHHHHhcCC-CCC--CCceEEEEEeCcch
Confidence 999999999999 998 47999999988754
No 22
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=4.9e-44 Score=415.56 Aligned_cols=332 Identities=20% Similarity=0.243 Sum_probs=234.3
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhc
Q 003910 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (787)
Q Consensus 246 ~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~ 325 (787)
.+|+|+|.+++++++.++++|++++||+|||++|++|++..+...+. ..++++|||+||++|+.||++++++++...
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~---~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 79 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPC---GQKGKVVFFANQIPVYEQQATVFSRYFERL 79 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS---SCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhccc---CCCCEEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 46999999999999999999999999999999999999998876531 236779999999999999999999999988
Q ss_pred CceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccc-cccceeEEEEechhhhhcCCC-hHHHHHHhhhc---
Q 003910 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKAL-TMSRVTYLVLDEADRMFDLGF-EPQIRSIVGQI--- 400 (787)
Q Consensus 326 ~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~-~l~~i~~lViDEah~m~~~~f-~~~i~~il~~~--- 400 (787)
++++..++|+.....++..+..+++|+|+||++|...+....+ .+..+++|||||||++.+.+. ...+...+...
T Consensus 80 ~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~ 159 (555)
T 3tbk_A 80 GYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGE 159 (555)
T ss_dssp TCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSS
T ss_pred CcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhcc
Confidence 9999999999987777777777899999999999999987766 788999999999999987652 22222333222
Q ss_pred --CCCceEEEEeccCcH-----------HHHHHHHHHhCCCeEEEeccc-----cc-ccccceEEEEe------------
Q 003910 401 --RPDRQTLLFSATMPR-----------KVEKLAREILSDPVRVTVGEV-----GM-ANEDITQVVHV------------ 449 (787)
Q Consensus 401 --~~~~q~ll~SAT~~~-----------~v~~l~~~~l~~p~~i~v~~~-----~~-~~~~i~q~~~~------------ 449 (787)
.+..|+++||||++. .+..+...+ .-+........ .. ...........
T Consensus 160 ~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
T 3tbk_A 160 SRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAAL-DASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIIS 238 (555)
T ss_dssp CCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHT-TCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHH
T ss_pred ccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhc-CCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHH
Confidence 256799999999853 122222221 11111100000 00 00000000000
Q ss_pred --------------------------------------------------------------------------------
Q 003910 450 -------------------------------------------------------------------------------- 449 (787)
Q Consensus 450 -------------------------------------------------------------------------------- 449 (787)
T Consensus 239 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 318 (555)
T 3tbk_A 239 QLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISE 318 (555)
T ss_dssp HHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence
Q ss_pred -----------------------------------------------cCCCcchHHHHHHhcCCc---CCCCCEEEEecc
Q 003910 450 -----------------------------------------------IPSDAEKLPWLLEKLPGM---IDDGDVLVFASK 479 (787)
Q Consensus 450 -----------------------------------------------~~~~~~k~~~L~~~L~~~---~~~~kvLVF~~s 479 (787)
......|...|.++|... ....++||||++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~ 398 (555)
T 3tbk_A 319 DAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKT 398 (555)
T ss_dssp HSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred hhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCc
Confidence 000134555565555443 245799999999
Q ss_pred cccHHHHHHHHHHcC----Cc--------eeeccCCCCHHHHHHHHHHhhc-CCccEEEEehhhhccCCCCCccEEEEec
Q 003910 480 KTTVDEIESQLAQKG----FK--------AAALHGDKDQASRMEILQKFKS-GVYHVLIATDVAARGLDIKSIKSVVNFD 546 (787)
Q Consensus 480 ~~~a~~l~~~L~~~g----~~--------v~~lhg~~~~~eR~~~l~~F~~-G~~~VLVaT~v~~rGlDip~v~~VI~~d 546 (787)
+..++.|+..|...+ +. ...+||+|++.+|..+++.|++ |.++|||||+++++|||+|+|++||+||
T Consensus 399 ~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d 478 (555)
T 3tbk_A 399 RALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYE 478 (555)
T ss_dssp HHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEES
T ss_pred HHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeC
Confidence 999999999999864 33 4455569999999999999999 9999999999999999999999999999
Q ss_pred CCCCHHHHHHHhhccCCCCCCCcEEEEEEccccHHHHH
Q 003910 547 IARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAG 584 (787)
Q Consensus 547 ~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~ 584 (787)
+|+|+..|+||+|| ||. +.|.+|+|+++.+.....
T Consensus 479 ~p~s~~~~~Qr~GR-gR~--~~g~~~~l~~~~~~~~~~ 513 (555)
T 3tbk_A 479 YVGNVIKMIQTRGR-GRA--RDSKCFLLTSSADVIEKE 513 (555)
T ss_dssp CCSSCCCEECSSCC-CTT--TSCEEEEEESCHHHHHHH
T ss_pred CCCCHHHHHHhcCc-CcC--CCceEEEEEcCCCHHHHH
Confidence 99999999999999 997 579999999987665443
No 23
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=5.2e-43 Score=420.39 Aligned_cols=339 Identities=24% Similarity=0.349 Sum_probs=269.2
Q ss_pred cCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEE
Q 003910 224 VKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPI-ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV 302 (787)
Q Consensus 224 i~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~-il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vL 302 (787)
..+|++++|++.+.+.+.+.||..|+|+|.++++. +..++++|+++|||||||++|.++++.++... +.++|
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~il 79 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN-------GGKAI 79 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-------CSEEE
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC-------CCeEE
Confidence 35799999999999999999999999999999999 78899999999999999999999999887532 57899
Q ss_pred EEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechh
Q 003910 303 ICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEAD 382 (787)
Q Consensus 303 Il~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah 382 (787)
|++|+++||.|+++.++++. ..++++..++|+....... ...++|+|+||++|..++......+.++++|||||||
T Consensus 80 ~i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H 155 (715)
T 2va8_A 80 YVTPLRALTNEKYLTFKDWE-LIGFKVAMTSGDYDTDDAW---LKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELH 155 (715)
T ss_dssp EECSCHHHHHHHHHHHGGGG-GGTCCEEECCSCSSSCCGG---GGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGG
T ss_pred EEeCcHHHHHHHHHHHHHhh-cCCCEEEEEeCCCCCchhh---cCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechh
Confidence 99999999999999996553 4589999999987655431 2368999999999999988776668999999999999
Q ss_pred hhhcCCChHHHHHHhhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEEeccccccc---------ccceEEEEecCC-
Q 003910 383 RMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMAN---------EDITQVVHVIPS- 452 (787)
Q Consensus 383 ~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~---------~~i~q~~~~~~~- 452 (787)
.+.+..+...+..++..++ +.|+|+||||+++ ...++.++...+ +......... ......+.+...
T Consensus 156 ~l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n-~~~~~~~l~~~~--~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~ 231 (715)
T 2va8_A 156 YLNDPERGPVVESVTIRAK-RRNLLALSATISN-YKQIAKWLGAEP--VATNWRPVPLIEGVIYPERKKKEYNVIFKDNT 231 (715)
T ss_dssp GGGCTTTHHHHHHHHHHHH-TSEEEEEESCCTT-HHHHHHHHTCEE--EECCCCSSCEEEEEEEECSSTTEEEEEETTSC
T ss_pred hcCCcccchHHHHHHHhcc-cCcEEEEcCCCCC-HHHHHHHhCCCc--cCCCCCCCCceEEEEecCCcccceeeecCcch
Confidence 9998888888888888877 8899999999986 366666554221 1111000000 000001111110
Q ss_pred ------CcchHHHHHHhcCCcCCCCCEEEEecccccHHHHHHHHHHcC--------------------------------
Q 003910 453 ------DAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKG-------------------------------- 494 (787)
Q Consensus 453 ------~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g-------------------------------- 494 (787)
...+...+.+.+. ..+++||||+++..++.++..|....
T Consensus 232 ~~~~~~~~~~~~~~~~~~~---~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~ 308 (715)
T 2va8_A 232 TKKVHGDDAIIAYTLDSLS---KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLK 308 (715)
T ss_dssp EEEEESSSHHHHHHHHHHT---TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHH
T ss_pred hhhcccchHHHHHHHHHHh---cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHH
Confidence 1233344444443 46799999999999999999998642
Q ss_pred ----CceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEEE----ec-------CCCCHHHHHHHhh
Q 003910 495 ----FKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN----FD-------IARDMDMHVHRIG 559 (787)
Q Consensus 495 ----~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~----~d-------~p~s~~~y~QriG 559 (787)
..+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+..+|+||+|
T Consensus 309 ~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~G 388 (715)
T 2va8_A 309 SLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSG 388 (715)
T ss_dssp HHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHT
T ss_pred HHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhh
Confidence 34899999999999999999999999999999999999999999999999 99 8999999999999
Q ss_pred ccCCCC-CCCcEEEEEEccccH
Q 003910 560 RTGRAG-DKDGTAYTLVTQKEA 580 (787)
Q Consensus 560 R~gR~G-~~~G~~i~l~~~~d~ 580 (787)
|+||.| ...|.||++++..+.
T Consensus 389 RaGR~g~~~~G~~~~l~~~~~~ 410 (715)
T 2va8_A 389 RAGRPGFDQIGESIVVVRDKED 410 (715)
T ss_dssp TBCCTTTCSCEEEEEECSCGGG
T ss_pred hcCCCCCCCCceEEEEeCCchH
Confidence 999998 347999999987663
No 24
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=4.2e-44 Score=428.75 Aligned_cols=341 Identities=21% Similarity=0.249 Sum_probs=226.6
Q ss_pred HHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHH
Q 003910 238 HAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLE 317 (787)
Q Consensus 238 ~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~ 317 (787)
..+...||.+|+|+|.+++++++.++|+|+++|||+|||++|++|++.++...+. ..++++|||+||++|+.||+++
T Consensus 4 ~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~---~~~~~~lvl~Pt~~L~~Q~~~~ 80 (696)
T 2ykg_A 4 SDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ---GQKGKVVFFANQIPVYEQNKSV 80 (696)
T ss_dssp ---CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCT---TCCCCEEEECSSHHHHHHHHHH
T ss_pred CcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCcc---CCCCeEEEEECCHHHHHHHHHH
Confidence 4566779999999999999999999999999999999999999999998865431 2236799999999999999999
Q ss_pred HHHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccc-cccceeEEEEechhhhhcCCC-hHHHHH
Q 003910 318 TKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKAL-TMSRVTYLVLDEADRMFDLGF-EPQIRS 395 (787)
Q Consensus 318 ~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~-~l~~i~~lViDEah~m~~~~f-~~~i~~ 395 (787)
+++++...++++..++|+.....+...+..+++|+|+||++|.+.+....+ .+..+++|||||||++.+... ...+..
T Consensus 81 ~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~ 160 (696)
T 2ykg_A 81 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFN 160 (696)
T ss_dssp HHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHH
T ss_pred HHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHH
Confidence 999998788999999999877666777777899999999999999987766 688999999999999886542 222222
Q ss_pred Hhhh-----cCCCceEEEEeccCc--------HHHHHHHHH---------------------HhCCCeEEEecccccc--
Q 003910 396 IVGQ-----IRPDRQTLLFSATMP--------RKVEKLARE---------------------ILSDPVRVTVGEVGMA-- 439 (787)
Q Consensus 396 il~~-----~~~~~q~ll~SAT~~--------~~v~~l~~~---------------------~l~~p~~i~v~~~~~~-- 439 (787)
.+.. ..+..++|+||||+. ..+..+... +...|...........
T Consensus 161 ~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~ 240 (696)
T 2ykg_A 161 YLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISD 240 (696)
T ss_dssp HHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCC
T ss_pred HHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCC
Confidence 2222 246789999999986 112222111 1112221111000000
Q ss_pred --------------------------------------------------------------------------------
Q 003910 440 -------------------------------------------------------------------------------- 439 (787)
Q Consensus 440 -------------------------------------------------------------------------------- 439 (787)
T Consensus 241 ~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 320 (696)
T 2ykg_A 241 KFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYN 320 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHh
Confidence
Q ss_pred -----------------------------cccceEEEEe---------------cCCCcchHHHHHHhcCCc---CCCCC
Q 003910 440 -----------------------------NEDITQVVHV---------------IPSDAEKLPWLLEKLPGM---IDDGD 472 (787)
Q Consensus 440 -----------------------------~~~i~q~~~~---------------~~~~~~k~~~L~~~L~~~---~~~~k 472 (787)
...+.+.+.. ......|...|..+|... ...++
T Consensus 321 ~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~ 400 (696)
T 2ykg_A 321 DALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETI 400 (696)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCC
T ss_pred HHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCc
Confidence 0000000000 001234666666666543 24569
Q ss_pred EEEEecccccHHHHHHHHHHcC----Cceeecc--------CCCCHHHHHHHHHHhhc-CCccEEEEehhhhccCCCCCc
Q 003910 473 VLVFASKKTTVDEIESQLAQKG----FKAAALH--------GDKDQASRMEILQKFKS-GVYHVLIATDVAARGLDIKSI 539 (787)
Q Consensus 473 vLVF~~s~~~a~~l~~~L~~~g----~~v~~lh--------g~~~~~eR~~~l~~F~~-G~~~VLVaT~v~~rGlDip~v 539 (787)
+||||+++..++.|++.|...+ +.+..+| ++|++.+|..+++.|++ |+++|||||+++++|||||+|
T Consensus 401 ~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v 480 (696)
T 2ykg_A 401 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQC 480 (696)
T ss_dssp EEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CCC
T ss_pred EEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccC
Confidence 9999999999999999999988 8899994 59999999999999998 999999999999999999999
Q ss_pred cEEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEccccHHHHH
Q 003910 540 KSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAG 584 (787)
Q Consensus 540 ~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~ 584 (787)
++||+||+|+++..|+||+|| ||. +.|.|++|++..+.....
T Consensus 481 ~~VI~~d~p~s~~~~~Qr~GR-GR~--~~g~~~~l~~~~~~~~~~ 522 (696)
T 2ykg_A 481 NLVILYEYVGNVIKMIQTRGR-GRA--RGSKCFLLTSNAGVIEKE 522 (696)
T ss_dssp SEEEEESCC--CCCC------------CCCEEEEEESCHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHhhcc-CcC--CCceEEEEecCCCHHHHH
Confidence 999999999999999999999 997 479999999887764433
No 25
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=2.6e-43 Score=423.07 Aligned_cols=335 Identities=20% Similarity=0.287 Sum_probs=273.8
Q ss_pred CccccCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEE
Q 003910 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPI-ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC 304 (787)
Q Consensus 226 sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~-il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl 304 (787)
+|++++|++.+.+.+.+.||..|+|+|.++++. ++.++++|+++|||||||++|.+|++.++... +.++||+
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~~l~i 74 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ-------GGKAVYI 74 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH-------CSEEEEE
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-------CCEEEEE
Confidence 589999999999999999999999999999998 88999999999999999999999999887532 5789999
Q ss_pred cCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhh
Q 003910 305 APTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRM 384 (787)
Q Consensus 305 ~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m 384 (787)
+|+++||.|+++.++++.. .++++..++|+....... ...++|+|+||++|..++......+.++++|||||||++
T Consensus 75 ~P~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l 150 (720)
T 2zj8_A 75 VPLKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDEW---LGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLI 150 (720)
T ss_dssp CSSGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCGG---GGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGG
T ss_pred cCcHHHHHHHHHHHHHHHh-cCCEEEEecCCCCccccc---cCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCccc
Confidence 9999999999999976544 589999999976654321 236899999999999988876666899999999999999
Q ss_pred hcCCChHHHHHHhhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEE------EEecCC----Cc
Q 003910 385 FDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQV------VHVIPS----DA 454 (787)
Q Consensus 385 ~~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~------~~~~~~----~~ 454 (787)
.++.+...+..++..++...|+|+||||+++ ...++.++...+ +..... ...+... +.+... ..
T Consensus 151 ~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n-~~~~~~~l~~~~--~~~~~r---p~~l~~~~~~~~~~~~~~~~~~~~~ 224 (720)
T 2zj8_A 151 GSRDRGATLEVILAHMLGKAQIIGLSATIGN-PEELAEWLNAEL--IVSDWR---PVKLRRGVFYQGFVTWEDGSIDRFS 224 (720)
T ss_dssp GCTTTHHHHHHHHHHHBTTBEEEEEECCCSC-HHHHHHHTTEEE--EECCCC---SSEEEEEEEETTEEEETTSCEEECS
T ss_pred CCCcccHHHHHHHHHhhcCCeEEEEcCCcCC-HHHHHHHhCCcc--cCCCCC---CCcceEEEEeCCeeeccccchhhhh
Confidence 9988999999999988878999999999986 356666543211 111100 0011111 111110 22
Q ss_pred chHHHHHHhcCCcCCCCCEEEEecccccHHHHHHHHHHc---------------------------------CCceeecc
Q 003910 455 EKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK---------------------------------GFKAAALH 501 (787)
Q Consensus 455 ~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~---------------------------------g~~v~~lh 501 (787)
.+...+.+.+. ..+++||||+++..++.++..|... ...+..+|
T Consensus 225 ~~~~~~~~~~~---~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h 301 (720)
T 2zj8_A 225 SWEELVYDAIR---KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHH 301 (720)
T ss_dssp STTHHHHHHHH---TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEEC
T ss_pred HHHHHHHHHHh---CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeec
Confidence 34445555443 3579999999999999999998753 12489999
Q ss_pred CCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEEE----ec----CCCCHHHHHHHhhccCCCC-CCCcEEE
Q 003910 502 GDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN----FD----IARDMDMHVHRIGRTGRAG-DKDGTAY 572 (787)
Q Consensus 502 g~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~----~d----~p~s~~~y~QriGR~gR~G-~~~G~~i 572 (787)
|+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.++.+|+||+||+||.| ...|.||
T Consensus 302 ~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~ 381 (720)
T 2zj8_A 302 AGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGI 381 (720)
T ss_dssp TTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEE
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEE
Confidence 9999999999999999999999999999999999999999998 77 6899999999999999998 3469999
Q ss_pred EEEccccH
Q 003910 573 TLVTQKEA 580 (787)
Q Consensus 573 ~l~~~~d~ 580 (787)
++++..+.
T Consensus 382 ~l~~~~~~ 389 (720)
T 2zj8_A 382 IVSTSDDP 389 (720)
T ss_dssp EECSSSCH
T ss_pred EEecCccH
Confidence 99988773
No 26
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=7.9e-43 Score=423.16 Aligned_cols=332 Identities=20% Similarity=0.216 Sum_probs=214.2
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHh
Q 003910 243 QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (787)
Q Consensus 243 ~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~ 322 (787)
.++..|+|+|.++|+.++.++++|++++||+|||++|++|++.++...+ ...++++|||+||++|+.||++++++++
T Consensus 244 ~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~---~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~ 320 (797)
T 4a2q_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKHHF 320 (797)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhcc---ccCCCeEEEEeCCHHHHHHHHHHHHHhc
Confidence 3678999999999999999999999999999999999999999987643 1236779999999999999999999999
Q ss_pred hhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccc-cccceeEEEEechhhhhcCCChHHHH-HHhhh-
Q 003910 323 KSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKAL-TMSRVTYLVLDEADRMFDLGFEPQIR-SIVGQ- 399 (787)
Q Consensus 323 ~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~-~l~~i~~lViDEah~m~~~~f~~~i~-~il~~- 399 (787)
...++++..++|+.....+...+..+++|||+||++|.+.+....+ .+..+++|||||||++.+.+....+. .++..
T Consensus 321 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~ 400 (797)
T 4a2q_A 321 ERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQK 400 (797)
T ss_dssp GGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHH
T ss_pred ccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHHh
Confidence 8889999999999987777777888899999999999999987766 78899999999999988764332222 22222
Q ss_pred ---cCCCceEEEEeccCc-----------HHHHHHHHHH------------------hCCCeEEEeccccccccc-----
Q 003910 400 ---IRPDRQTLLFSATMP-----------RKVEKLAREI------------------LSDPVRVTVGEVGMANED----- 442 (787)
Q Consensus 400 ---~~~~~q~ll~SAT~~-----------~~v~~l~~~~------------------l~~p~~i~v~~~~~~~~~----- 442 (787)
..+..|+|+||||+. ..+..++..+ +..|....+.........
T Consensus 401 ~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (797)
T 4a2q_A 401 FNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAII 480 (797)
T ss_dssp HTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHH
T ss_pred hccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHH
Confidence 156689999999985 2233322221 222221111000000000
Q ss_pred -------------ce------EE-------------E-------------------------------------------
Q 003910 443 -------------IT------QV-------------V------------------------------------------- 447 (787)
Q Consensus 443 -------------i~------q~-------------~------------------------------------------- 447 (787)
+. .. +
T Consensus 481 ~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 560 (797)
T 4a2q_A 481 SNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISE 560 (797)
T ss_dssp HHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 00 00 0
Q ss_pred ---------------------------------------------EecCCCcchHHHHHHhcCCc---CCCCCEEEEecc
Q 003910 448 ---------------------------------------------HVIPSDAEKLPWLLEKLPGM---IDDGDVLVFASK 479 (787)
Q Consensus 448 ---------------------------------------------~~~~~~~~k~~~L~~~L~~~---~~~~kvLVF~~s 479 (787)
........|+..|..+|... ....++||||++
T Consensus 561 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~ 640 (797)
T 4a2q_A 561 DARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKT 640 (797)
T ss_dssp HSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESS
T ss_pred cccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECc
Confidence 00000133555566655432 245799999999
Q ss_pred cccHHHHHHHHHHc------------CCceeeccCCCCHHHHHHHHHHhhc-CCccEEEEehhhhccCCCCCccEEEEec
Q 003910 480 KTTVDEIESQLAQK------------GFKAAALHGDKDQASRMEILQKFKS-GVYHVLIATDVAARGLDIKSIKSVVNFD 546 (787)
Q Consensus 480 ~~~a~~l~~~L~~~------------g~~v~~lhg~~~~~eR~~~l~~F~~-G~~~VLVaT~v~~rGlDip~v~~VI~~d 546 (787)
+..++.|+.+|... |..+..+||+|++.+|..+++.|++ |.++|||||+++++|||+|+|++||+||
T Consensus 641 ~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd 720 (797)
T 4a2q_A 641 RALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYE 720 (797)
T ss_dssp HHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEES
T ss_pred HHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeC
Confidence 99999999999873 5566777899999999999999999 9999999999999999999999999999
Q ss_pred CCCCHHHHHHHhhccCCCCCCCcEEEEEEccccH
Q 003910 547 IARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (787)
Q Consensus 547 ~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~ 580 (787)
+|+|+..|+||+|| ||. +.|.||+|++..+.
T Consensus 721 ~p~s~~~~iQr~GR-GR~--~~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 721 YSGNVTKMIQVRGR-GRA--AGSKCILVTSKTEV 751 (797)
T ss_dssp CCSCHHHHHTC----------CCCEEEEECCHHH
T ss_pred CCCCHHHHHHhcCC-CCC--CCceEEEEEeCCcH
Confidence 99999999999999 998 47999999988654
No 27
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=2e-43 Score=422.95 Aligned_cols=334 Identities=22% Similarity=0.321 Sum_probs=267.2
Q ss_pred CccccC--CCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEE
Q 003910 226 TFEDCG--FSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI 303 (787)
Q Consensus 226 sf~~~~--l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLI 303 (787)
+|++++ |++.+.+.+++.||..|+|+|.++++.++.++++|+++|||||||++|.+|++..+.. ++++||
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------~~~~l~ 73 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK--------GGKSLY 73 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT--------TCCEEE
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh--------CCcEEE
Confidence 577888 9999999999999999999999999999999999999999999999999999988743 467999
Q ss_pred EcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhh
Q 003910 304 CAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR 383 (787)
Q Consensus 304 l~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~ 383 (787)
++|+++||.|+++.++++. ..++++..++|+....... ...++|+|+||++|..++......+.++++|||||||.
T Consensus 74 i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~ 149 (702)
T 2p6r_A 74 VVPLRALAGEKYESFKKWE-KIGLRIGISTGDYESRDEH---LGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHL 149 (702)
T ss_dssp EESSHHHHHHHHHHHTTTT-TTTCCEEEECSSCBCCSSC---STTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGG
T ss_pred EeCcHHHHHHHHHHHHHHH-hcCCEEEEEeCCCCcchhh---ccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeee
Confidence 9999999999999996554 3588999999987654421 23689999999999999887666688999999999999
Q ss_pred hhcCCChHHHHHHhhhc---CCCceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEE------EecCCC-
Q 003910 384 MFDLGFEPQIRSIVGQI---RPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVV------HVIPSD- 453 (787)
Q Consensus 384 m~~~~f~~~i~~il~~~---~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~------~~~~~~- 453 (787)
+.++++...+..++..+ +++.|+|+||||+++ ...++.++.. +. +...... ..+...+ ......
T Consensus 150 l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~~l~~-~~-~~~~~r~---~~l~~~~~~~~~~~~~~~~~ 223 (702)
T 2p6r_A 150 LDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAEWLDA-DY-YVSDWRP---VPLVEGVLCEGTLELFDGAF 223 (702)
T ss_dssp GGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHHHTTC-EE-EECCCCS---SCEEEEEECSSEEEEEETTE
T ss_pred cCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHHHhCC-Cc-ccCCCCC---ccceEEEeeCCeeeccCcch
Confidence 99988888888777665 578999999999986 4666665532 21 1111111 1111111 111100
Q ss_pred -----cchHHHHHHhcCCcCCCCCEEEEecccccHHHHHHHHHHc------------------------------CCcee
Q 003910 454 -----AEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK------------------------------GFKAA 498 (787)
Q Consensus 454 -----~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~------------------------------g~~v~ 498 (787)
..+...+.+.+. ..+++||||+++..++.++..|... ++.+.
T Consensus 224 ~~~~~~~~~~~~~~~~~---~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~ 300 (702)
T 2p6r_A 224 STSRRVKFEELVEECVA---ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAA 300 (702)
T ss_dssp EEEEECCHHHHHHHHHH---TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCC
T ss_pred hhhhhhhHHHHHHHHHh---cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeE
Confidence 013444444443 4679999999999999999998753 24588
Q ss_pred eccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEEE----ec---CCCCHHHHHHHhhccCCCC-CCCcE
Q 003910 499 ALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN----FD---IARDMDMHVHRIGRTGRAG-DKDGT 570 (787)
Q Consensus 499 ~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~----~d---~p~s~~~y~QriGR~gR~G-~~~G~ 570 (787)
.+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.++.+|+||+||+||.| ...|.
T Consensus 301 ~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~ 380 (702)
T 2p6r_A 301 FHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGE 380 (702)
T ss_dssp EECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEE
T ss_pred EecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCce
Confidence 8999999999999999999999999999999999999999999998 77 7899999999999999998 34799
Q ss_pred EEEEEccccH
Q 003910 571 AYTLVTQKEA 580 (787)
Q Consensus 571 ~i~l~~~~d~ 580 (787)
||++++..+.
T Consensus 381 ~~~l~~~~~~ 390 (702)
T 2p6r_A 381 AIIIVGKRDR 390 (702)
T ss_dssp EEEECCGGGH
T ss_pred EEEEecCccH
Confidence 9999988763
No 28
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=1.5e-42 Score=429.00 Aligned_cols=320 Identities=23% Similarity=0.305 Sum_probs=265.8
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHh
Q 003910 243 QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (787)
Q Consensus 243 ~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~ 322 (787)
.+| +|||+|.++|+.++.++|+|++|+||||||++|+++++..+ ..++++|||+||++||.|+++.+++++
T Consensus 75 ~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~--------~~~~~~Lil~PtreLa~Q~~~~l~~l~ 145 (1104)
T 4ddu_A 75 FGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA--------RKGKKSALVFPTVTLVKQTLERLQKLA 145 (1104)
T ss_dssp SSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH--------TTTCCEEEEESSHHHHHHHHHHHHTTS
T ss_pred cCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH--------hcCCeEEEEechHHHHHHHHHHHHHhh
Confidence 466 69999999999999999999999999999998888877766 346789999999999999999999977
Q ss_pred hhcCceEEEEECCCCh---HHHHHHHhcC-CcEEEeCHHHHHHHHHhccccccceeEEEEechhh----------hhc-C
Q 003910 323 KSHGIRVSAVYGGMSK---LDQFKELKAG-CEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR----------MFD-L 387 (787)
Q Consensus 323 ~~~~i~v~~~~gg~~~---~~~~~~l~~~-~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~----------m~~-~ 387 (787)
..++++.+++||.+. ..++..+..+ ++|||+||++|.+++.. +.+.++++|||||||+ |++ +
T Consensus 146 -~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~ 222 (1104)
T 4ddu_A 146 -DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMV 222 (1104)
T ss_dssp -CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHHHTS
T ss_pred -CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhhHhc
Confidence 668999999999987 6677778776 99999999999888764 6678999999999965 555 8
Q ss_pred CChHH-HHHHhhhcC-----------CCceEEEEecc-CcHHHHH-HHHHHhCCCeEEEecccccccccceEEEEecCCC
Q 003910 388 GFEPQ-IRSIVGQIR-----------PDRQTLLFSAT-MPRKVEK-LAREILSDPVRVTVGEVGMANEDITQVVHVIPSD 453 (787)
Q Consensus 388 ~f~~~-i~~il~~~~-----------~~~q~ll~SAT-~~~~v~~-l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~ 453 (787)
+|... +..++..++ +.+|+++|||| +|..+.. +...++. +.+........++.+.+..+
T Consensus 223 gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~~~~~~i~~~~~~~--- 295 (1104)
T 4ddu_A 223 GIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISS--- 295 (1104)
T ss_dssp SCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCCCCCCCEEEEEESC---
T ss_pred CCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCCCCcCCceeEEEec---
Confidence 99988 888988877 88999999999 5655542 3344333 33344445566677776655
Q ss_pred cchHHHHHHhcCCcCCCCCEEEEecccccHHHHHHHHHHcCCcee-eccCCCCHHHHHHHHHHhhcCCccEEEE----eh
Q 003910 454 AEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAA-ALHGDKDQASRMEILQKFKSGVYHVLIA----TD 528 (787)
Q Consensus 454 ~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~-~lhg~~~~~eR~~~l~~F~~G~~~VLVa----T~ 528 (787)
.+...|..+|.. ..+++||||+++..++.++..|...++.+. .+|| +|.+ ++.|++|+++|||| |+
T Consensus 296 -~k~~~L~~ll~~--~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVatas~Td 366 (1104)
T 4ddu_A 296 -RSKEKLVELLEI--FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVGKINILIGVQAYYG 366 (1104)
T ss_dssp -CCHHHHHHHHHH--HCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHTSCSEEEEETTTHH
T ss_pred -CHHHHHHHHHHh--cCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCCCCCEEEEecCCCC
Confidence 455666666655 247999999999999999999999999998 9999 2555 99999999999999 99
Q ss_pred hhhccCCCCC-ccEEEEecCCC----------------------------------------------------------
Q 003910 529 VAARGLDIKS-IKSVVNFDIAR---------------------------------------------------------- 549 (787)
Q Consensus 529 v~~rGlDip~-v~~VI~~d~p~---------------------------------------------------------- 549 (787)
++++|||+|+ |++|||||+|.
T Consensus 367 vlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~ 446 (1104)
T 4ddu_A 367 KLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFR 446 (1104)
T ss_dssp HHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCC
T ss_pred eeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccc
Confidence 9999999999 99999999998
Q ss_pred --------------CHHHHHHHhhccCCCCC---CCcEEEEEEccccHHHHHHHHHHHHH
Q 003910 550 --------------DMDMHVHRIGRTGRAGD---KDGTAYTLVTQKEARFAGELVNSLIA 592 (787)
Q Consensus 550 --------------s~~~y~QriGR~gR~G~---~~G~~i~l~~~~d~~~~~~l~~~l~~ 592 (787)
++.+|+||+|||||.|. ..|.+++++ .|...+..|.+.|.-
T Consensus 447 ~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~--~d~~~~~~l~~~~~~ 504 (1104)
T 4ddu_A 447 GVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLLL 504 (1104)
T ss_dssp SSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEEC--CCHHHHHHHHHHHHH
T ss_pred eEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEE--ecHHHHHHHHHHHhh
Confidence 78899999999999652 134555555 888888888888763
No 29
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=2.3e-43 Score=411.29 Aligned_cols=364 Identities=19% Similarity=0.242 Sum_probs=251.0
Q ss_pred CccccCCCHHHHHHHHHHcCceeccCCCCCccCCccccCCCHHHHHHHHH-----CCCCCCcHHHHHHHHHHHcCCCEEE
Q 003910 193 SASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISK-----QGYEKPTSIQCQALPIILSGRDIIG 267 (787)
Q Consensus 193 ~~~i~~~s~~~~~~~~~~~~i~v~g~~~P~pi~sf~~~~l~~~l~~~l~~-----~g~~~ptp~Q~~ai~~il~grdvii 267 (787)
.+.+..|+.+++.....++...+.... +++++ | ++....+.. .|. .|+|+|..++|.+++|+ |+
T Consensus 24 e~~~~~lsd~eL~~kt~~fk~rl~~g~------~ld~~-l-peafA~vrea~~R~lg~-~p~~VQ~~~i~~ll~G~--Ia 92 (853)
T 2fsf_A 24 EPEMEKLSDEELKGKTAEFRARLEKGE------VLENL-I-PEAFAVVREASKRVFGM-RHFDVQLLGGMVLNERC--IA 92 (853)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHTTC------CHHHH-H-HHHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHSSE--EE
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHcCC------Chhhh-h-HHHHHHHHHHHHHHcCC-CCChHHHhhcccccCCe--ee
Confidence 346788888888776666544433211 12221 1 222222222 353 89999999999999998 99
Q ss_pred EccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhc
Q 003910 268 IAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKA 347 (787)
Q Consensus 268 ~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~ 347 (787)
.++||+|||++|++|++.+++ .++.++||+||++||.|+++++..++..+++++.+++||.+.. .+.+..
T Consensus 93 em~TGsGKTlaf~LP~l~~~l--------~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~--~r~~~~ 162 (853)
T 2fsf_A 93 EMRTGEGKTLTATLPAYLNAL--------TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAP--AKREAY 162 (853)
T ss_dssp ECCTTSCHHHHHHHHHHHHHT--------TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHH--HHHHHH
T ss_pred eecCCchHHHHHHHHHHHHHH--------cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHH--HHHHhc
Confidence 999999999999999987653 2567999999999999999999999999999999999998764 344555
Q ss_pred CCcEEEeCHHHH-HHHHHhc------cccccceeEEEEechhhhh-cCC---------------ChHHHHHHhhhcCC--
Q 003910 348 GCEIVIATPGRL-IDMLKMK------ALTMSRVTYLVLDEADRMF-DLG---------------FEPQIRSIVGQIRP-- 402 (787)
Q Consensus 348 ~~dIIV~Tp~~L-~~~l~~~------~~~l~~i~~lViDEah~m~-~~~---------------f~~~i~~il~~~~~-- 402 (787)
+++|+|+||++| ++++..+ .+.+..+.++||||||+|+ +.+ |...+..|+..+++
T Consensus 163 ~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~~~~ 242 (853)
T 2fsf_A 163 AADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLIRQE 242 (853)
T ss_dssp HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC----------------------
T ss_pred CCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCccchhHHHHHHHHHHhchhhh
Confidence 799999999999 7887654 3567899999999999998 543 56678888887764
Q ss_pred ------------------CceEE------------------------EEeccCcH---HHHHHH--HHHhC--------C
Q 003910 403 ------------------DRQTL------------------------LFSATMPR---KVEKLA--REILS--------D 427 (787)
Q Consensus 403 ------------------~~q~l------------------------l~SAT~~~---~v~~l~--~~~l~--------~ 427 (787)
.+|++ +||||.+. .+...+ ..++. +
T Consensus 243 ~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiV~d 322 (853)
T 2fsf_A 243 KEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTAALRAHALFTRDVDYIVKD 322 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHHHHHHHHHHHhhcCccceeec
Confidence 46654 89999764 222111 11111 0
Q ss_pred C-----------------------------eEEEecccccccccceE---------------------------------
Q 003910 428 P-----------------------------VRVTVGEVGMANEDITQ--------------------------------- 445 (787)
Q Consensus 428 p-----------------------------~~i~v~~~~~~~~~i~q--------------------------------- 445 (787)
+ ..+.+.....+...|++
T Consensus 323 ~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~GmTGTa~te~~ef~~iY~l~vv 402 (853)
T 2fsf_A 323 GEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTV 402 (853)
T ss_dssp ----------------------------------CCCCCEEEEEEEHHHHHTTSSEEEEEECTTCCCHHHHHHHHCCEEE
T ss_pred CcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcCCCCchhHHHHHHHHhCCcEE
Confidence 0 11111111111111211
Q ss_pred -------------EEEecCCCcchHHHHHHhcCCcC-CCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHH
Q 003910 446 -------------VVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRME 511 (787)
Q Consensus 446 -------------~~~~~~~~~~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~ 511 (787)
...+......|+..|+..+.... ...++||||+++..++.|+..|...|+++.+|||.+.+.++..
T Consensus 403 ~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~i 482 (853)
T 2fsf_A 403 VVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAI 482 (853)
T ss_dssp ECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHH
T ss_pred EcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHH
Confidence 00122244567888887775432 3458999999999999999999999999999999999888888
Q ss_pred HHHHhhcCCccEEEEehhhhccCCCCCc-------------------------------------cEEEEecCCCCHHHH
Q 003910 512 ILQKFKSGVYHVLIATDVAARGLDIKSI-------------------------------------KSVVNFDIARDMDMH 554 (787)
Q Consensus 512 ~l~~F~~G~~~VLVaT~v~~rGlDip~v-------------------------------------~~VI~~d~p~s~~~y 554 (787)
+...|+.| .|||||++|+||+||+.. .|||+|+.|.+...|
T Consensus 483 ia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy 560 (853)
T 2fsf_A 483 VAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRID 560 (853)
T ss_dssp HHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHH
T ss_pred HHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHH
Confidence 88899988 699999999999999973 699999999999999
Q ss_pred HHHhhccCCCCCCCcEEEEEEccccH
Q 003910 555 VHRIGRTGRAGDKDGTAYTLVTQKEA 580 (787)
Q Consensus 555 ~QriGR~gR~G~~~G~~i~l~~~~d~ 580 (787)
+||+|||||.| .+|.+++|++..|.
T Consensus 561 ~qr~GRTGRqG-d~G~s~~fls~eD~ 585 (853)
T 2fsf_A 561 NQLRGRSGRQG-DAGSSRFYLSMEDA 585 (853)
T ss_dssp HHHHTTSSGGG-CCEEEEEEEETTSG
T ss_pred HhhccccccCC-CCeeEEEEecccHH
Confidence 99999999999 68999999998774
No 30
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=7.2e-42 Score=388.90 Aligned_cols=323 Identities=21% Similarity=0.246 Sum_probs=252.4
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcC
Q 003910 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (787)
Q Consensus 247 ~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~ 326 (787)
+|+|+|.+++++++.+ ++|++++||+|||++++++++..+. ..+.++|||+|+++|+.||.+++.+++....
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~-------~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 80 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLT-------KYGGKVLMLAPTKPLVLQHAESFRRLFNLPP 80 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHH-------HSCSCEEEECSSHHHHHHHHHHHHHHBCSCG
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHh-------cCCCeEEEEECCHHHHHHHHHHHHHHhCcch
Confidence 6999999999999999 9999999999999999999988774 2356799999999999999999999974334
Q ss_pred ceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHhhhcCCCceE
Q 003910 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQT 406 (787)
Q Consensus 327 i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ 406 (787)
.++..++|+...... ..+...++|+|+||+.|...+....+.+..+++|||||||++.+......+...+....+..++
T Consensus 81 ~~v~~~~g~~~~~~~-~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~ 159 (494)
T 1wp9_A 81 EKIVALTGEKSPEER-SKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLV 159 (494)
T ss_dssp GGEEEECSCSCHHHH-HHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCE
T ss_pred hheEEeeCCcchhhh-hhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeE
Confidence 588888887766543 3444568999999999999988877788999999999999998765455566666666778899
Q ss_pred EEEeccCcHH---HHHHHHHHhCCCeEEEecccccc-----cccceEEE-------------------------------
Q 003910 407 LLFSATMPRK---VEKLAREILSDPVRVTVGEVGMA-----NEDITQVV------------------------------- 447 (787)
Q Consensus 407 ll~SAT~~~~---v~~l~~~~l~~p~~i~v~~~~~~-----~~~i~q~~------------------------------- 447 (787)
++||||+.+. +..++..+......+........ ...+....
T Consensus 160 l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (494)
T 1wp9_A 160 IGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLL 239 (494)
T ss_dssp EEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred EEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999743 44444443222111110000000 00000000
Q ss_pred --------------------------------------------------------------------------------
Q 003910 448 -------------------------------------------------------------------------------- 447 (787)
Q Consensus 448 -------------------------------------------------------------------------------- 447 (787)
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 319 (494)
T 1wp9_A 240 ESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEI 319 (494)
T ss_dssp SCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred cccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhh
Confidence
Q ss_pred ----------------EecCCCcchHHHHHHhcCCc---CCCCCEEEEecccccHHHHHHHHHHcCCceeeccC------
Q 003910 448 ----------------HVIPSDAEKLPWLLEKLPGM---IDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHG------ 502 (787)
Q Consensus 448 ----------------~~~~~~~~k~~~L~~~L~~~---~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg------ 502 (787)
........|...|.++|... ....++||||+++..++.+++.|...++.+..+||
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~ 399 (494)
T 1wp9_A 320 FSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKEN 399 (494)
T ss_dssp HTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC--
T ss_pred hhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccc
Confidence 00002334556666666553 35679999999999999999999999999999999
Q ss_pred --CCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEccccH
Q 003910 503 --DKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (787)
Q Consensus 503 --~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~ 580 (787)
++++.+|..+++.|++|.++|||||+++++|||+|++++||+||+||++..|+||+||+||.| . |.+|.|+++.+.
T Consensus 400 ~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g-~-g~~~~l~~~~t~ 477 (494)
T 1wp9_A 400 DRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHM-P-GRVIILMAKGTR 477 (494)
T ss_dssp -----CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCC-C-SEEEEEEETTSH
T ss_pred cccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCC-C-ceEEEEEecCCH
Confidence 999999999999999999999999999999999999999999999999999999999999999 3 999999998754
No 31
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=6e-43 Score=432.73 Aligned_cols=324 Identities=20% Similarity=0.290 Sum_probs=264.4
Q ss_pred HHHH-HCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHH
Q 003910 238 HAIS-KQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYL 316 (787)
Q Consensus 238 ~~l~-~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~ 316 (787)
+.+. ..||. | |+|.++|+.++.++|+|++++||||||+ |++|++.++.. .++++|||+||++||.|+++
T Consensus 48 ~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~-------~~~~~lil~PtreLa~Q~~~ 117 (1054)
T 1gku_B 48 EFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL-------KGKRCYVIFPTSLLVIQAAE 117 (1054)
T ss_dssp HHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT-------TSCCEEEEESCHHHHHHHHH
T ss_pred HHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh-------cCCeEEEEeccHHHHHHHHH
Confidence 3344 36999 9 9999999999999999999999999998 89999988754 36789999999999999999
Q ss_pred HHHHHhhhcCc----eEEEEECCCChHHH---HHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCC
Q 003910 317 ETKKFAKSHGI----RVSAVYGGMSKLDQ---FKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGF 389 (787)
Q Consensus 317 ~~~~~~~~~~i----~v~~~~gg~~~~~~---~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f 389 (787)
.+++++...++ ++.+++|+.....+ ...+.. ++|+|+||++|.+++.. |..+++|||||||+|++ |
T Consensus 118 ~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~--~ 190 (1054)
T 1gku_B 118 TIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK--A 190 (1054)
T ss_dssp HHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT--S
T ss_pred HHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh--c
Confidence 99999988888 89999999887663 344455 99999999999997754 67899999999999998 4
Q ss_pred hHHHHHHhhhc-----------CCCceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcchHH
Q 003910 390 EPQIRSIVGQI-----------RPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLP 458 (787)
Q Consensus 390 ~~~i~~il~~~-----------~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~ 458 (787)
...+..++..+ +..+|+++||||+++. ..++..++.++..+.+.........+.+.+. ...+..
T Consensus 191 ~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~----~~~k~~ 265 (1054)
T 1gku_B 191 SKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAV----NDESIS 265 (1054)
T ss_dssp THHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEE----SCCCTT
T ss_pred cccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEe----chhHHH
Confidence 67777777665 3568999999999877 6555555555544444444444555666554 245556
Q ss_pred HHHHhcCCcCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEE----ehhhhccC
Q 003910 459 WLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIA----TDVAARGL 534 (787)
Q Consensus 459 ~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVa----T~v~~rGl 534 (787)
.|..++... .+++||||+++..|+.++..|... +.+..+||++. .+++.|++|+++|||| |+++++||
T Consensus 266 ~L~~ll~~~--~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~rGI 337 (1054)
T 1gku_B 266 TLSSILEKL--GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVRGL 337 (1054)
T ss_dssp TTHHHHTTS--CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------CCS
T ss_pred HHHHHHhhc--CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEecc
Confidence 666666654 578999999999999999999988 99999999983 7889999999999999 89999999
Q ss_pred CCCCc-cEEEEecCC-----------------------------------------------------------------
Q 003910 535 DIKSI-KSVVNFDIA----------------------------------------------------------------- 548 (787)
Q Consensus 535 Dip~v-~~VI~~d~p----------------------------------------------------------------- 548 (787)
|+|+| ++||+||+|
T Consensus 338 Dip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 417 (1054)
T 1gku_B 338 DLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVR 417 (1054)
T ss_dssp CCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEE
T ss_pred ccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEe
Confidence 99995 999999999
Q ss_pred ------CCHHHHHHHhhccCCCCCCCc--EEEEEEccccHHHHHHHHHHHHH
Q 003910 549 ------RDMDMHVHRIGRTGRAGDKDG--TAYTLVTQKEARFAGELVNSLIA 592 (787)
Q Consensus 549 ------~s~~~y~QriGR~gR~G~~~G--~~i~l~~~~d~~~~~~l~~~l~~ 592 (787)
.++.+|+||+|||||.| ..| .+++|+...+...+..|.+.+..
T Consensus 418 ~~~~~~~~~~~yiQr~GRagR~g-~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 418 EGEVIFPDLRTYIQGSGRTSRLF-AGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp TTEEEEECHHHHHHHHHTTCCEE-TTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred ecceecCcHHHHhhhhchhhhcc-CCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 78999999999999987 445 48888888888888888888864
No 32
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=9.2e-42 Score=418.65 Aligned_cols=332 Identities=20% Similarity=0.223 Sum_probs=213.3
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHh
Q 003910 243 QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (787)
Q Consensus 243 ~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~ 322 (787)
.++.+|+|+|.+++++++.++++|++++||+|||++|++|++.++...+ ...++++|||+||++|+.||++++++++
T Consensus 244 ~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~---~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~ 320 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKHHF 320 (936)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhcc---ccCCCeEEEEeCCHHHHHHHHHHHHHHh
Confidence 3578899999999999999999999999999999999999988775532 1236779999999999999999999999
Q ss_pred hhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccc-cccceeEEEEechhhhhcCCChHHH-HHHhhh-
Q 003910 323 KSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKAL-TMSRVTYLVLDEADRMFDLGFEPQI-RSIVGQ- 399 (787)
Q Consensus 323 ~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~-~l~~i~~lViDEah~m~~~~f~~~i-~~il~~- 399 (787)
...++++..++|+.....+...+..+++|||+||++|.+.+....+ .+..+++|||||||++...+....+ ..++..
T Consensus 321 ~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~ 400 (936)
T 4a2w_A 321 ERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQK 400 (936)
T ss_dssp HTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHH
T ss_pred cccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHHh
Confidence 8889999999999877766666667799999999999999987766 6889999999999998876432222 222222
Q ss_pred ---cCCCceEEEEeccCc-----------HHHHHHHH------------------HHhCCCeEEEecccccccc------
Q 003910 400 ---IRPDRQTLLFSATMP-----------RKVEKLAR------------------EILSDPVRVTVGEVGMANE------ 441 (787)
Q Consensus 400 ---~~~~~q~ll~SAT~~-----------~~v~~l~~------------------~~l~~p~~i~v~~~~~~~~------ 441 (787)
..+..|+++||||+. ..+..+.. .++..|....+........
T Consensus 401 ~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l 480 (936)
T 4a2w_A 401 FNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAII 480 (936)
T ss_dssp HTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHH
T ss_pred hccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHHH
Confidence 156689999999984 22222221 2222232221110000000
Q ss_pred ------------cc------eEE-------------E-------------------------------------------
Q 003910 442 ------------DI------TQV-------------V------------------------------------------- 447 (787)
Q Consensus 442 ------------~i------~q~-------------~------------------------------------------- 447 (787)
.+ .+. +
T Consensus 481 ~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~ 560 (936)
T 4a2w_A 481 SNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISE 560 (936)
T ss_dssp HHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 00 000 0
Q ss_pred ---------------------------------------------EecCCCcchHHHHHHhcCCc---CCCCCEEEEecc
Q 003910 448 ---------------------------------------------HVIPSDAEKLPWLLEKLPGM---IDDGDVLVFASK 479 (787)
Q Consensus 448 ---------------------------------------------~~~~~~~~k~~~L~~~L~~~---~~~~kvLVF~~s 479 (787)
........|+..|.++|... ....++||||++
T Consensus 561 ~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t 640 (936)
T 4a2w_A 561 DARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKT 640 (936)
T ss_dssp HSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESS
T ss_pred chhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCC
Confidence 00000233555555555443 245799999999
Q ss_pred cccHHHHHHHHHHc------------CCceeeccCCCCHHHHHHHHHHhhc-CCccEEEEehhhhccCCCCCccEEEEec
Q 003910 480 KTTVDEIESQLAQK------------GFKAAALHGDKDQASRMEILQKFKS-GVYHVLIATDVAARGLDIKSIKSVVNFD 546 (787)
Q Consensus 480 ~~~a~~l~~~L~~~------------g~~v~~lhg~~~~~eR~~~l~~F~~-G~~~VLVaT~v~~rGlDip~v~~VI~~d 546 (787)
+..++.|+.+|... |..+..+||+|++.+|..+++.|++ |.++|||||+++++|||||+|++||+||
T Consensus 641 ~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD 720 (936)
T 4a2w_A 641 RALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYE 720 (936)
T ss_dssp HHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEEES
T ss_pred HHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeC
Confidence 99999999999986 5556667888999999999999999 9999999999999999999999999999
Q ss_pred CCCCHHHHHHHhhccCCCCCCCcEEEEEEccccH
Q 003910 547 IARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (787)
Q Consensus 547 ~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~ 580 (787)
+|+|+..|+||+|| ||. +.|.+|+|++..+.
T Consensus 721 ~p~s~~~~iQr~GR-GR~--~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 721 YSGNVTKMIQVRGR-GRA--AGSKCILVTSKTEV 751 (936)
T ss_dssp CCSCSHHHHCC----------CCCEEEEESCHHH
T ss_pred CCCCHHHHHHhcCC-CCC--CCCEEEEEEeCCCH
Confidence 99999999999999 998 47999999987654
No 33
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.7e-41 Score=409.62 Aligned_cols=317 Identities=19% Similarity=0.230 Sum_probs=254.6
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhh
Q 003910 244 GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (787)
Q Consensus 244 g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~ 323 (787)
+|. |+|+|.++|+.++.++++|+++|||+|||++|.++++..+. .++++||++||++|+.|+++.+.+++.
T Consensus 84 ~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~--------~g~rvL~l~PtkaLa~Q~~~~l~~~~~ 154 (1010)
T 2xgj_A 84 PFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK--------NKQRVIYTSPIKALSNQKYRELLAEFG 154 (1010)
T ss_dssp SSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH--------TTCEEEEEESSHHHHHHHHHHHHHHHS
T ss_pred CCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc--------cCCeEEEECChHHHHHHHHHHHHHHhC
Confidence 454 99999999999999999999999999999999999988762 367899999999999999999999864
Q ss_pred hcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHhhhcCCC
Q 003910 324 SHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPD 403 (787)
Q Consensus 324 ~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~ 403 (787)
.+.+++|+..... .++|+|+||++|..++.+....+..+++|||||||+|.++++...+..++..+++.
T Consensus 155 ----~vglltGd~~~~~-------~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~ 223 (1010)
T 2xgj_A 155 ----DVGLMTGDITINP-------DAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDK 223 (1010)
T ss_dssp ----CEEEECSSCEECT-------TCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTT
T ss_pred ----CEEEEeCCCccCC-------CCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCC
Confidence 6677888766532 48999999999999988777788999999999999999999999999999999999
Q ss_pred ceEEEEeccCcHHHHHHHHH---HhCCCeEEEecccccccccceEEEEecC---------CC------------------
Q 003910 404 RQTLLFSATMPRKVEKLARE---ILSDPVRVTVGEVGMANEDITQVVHVIP---------SD------------------ 453 (787)
Q Consensus 404 ~q~ll~SAT~~~~v~~l~~~---~l~~p~~i~v~~~~~~~~~i~q~~~~~~---------~~------------------ 453 (787)
.|+|+||||+++.. +++.+ ....+..+....... ..+.+.+.... ..
T Consensus 224 ~~il~LSATi~n~~-e~a~~l~~~~~~~~~vi~~~~rp--~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 300 (1010)
T 2xgj_A 224 VRYVFLSATIPNAM-EFAEWICKIHSQPCHIVYTNFRP--TPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQ 300 (1010)
T ss_dssp CEEEEEECCCTTHH-HHHHHHHHHHTSCEEEEEECCCS--SCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC--
T ss_pred CeEEEEcCCCCCHH-HHHHHHHhhcCCCeEEEecCCCc--ccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhh
Confidence 99999999998753 34443 345565554432221 12222222110 00
Q ss_pred ---------------------------cchHHHHHHhcCCcCCCCCEEEEecccccHHHHHHHHHHcCCc----------
Q 003910 454 ---------------------------AEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFK---------- 496 (787)
Q Consensus 454 ---------------------------~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~---------- 496 (787)
...+..++..+... ...++||||+++..|+.++..|...++.
T Consensus 301 ~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~-~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~ 379 (1010)
T 2xgj_A 301 IGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK-KYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTK 379 (1010)
T ss_dssp ----------------------------CHHHHHHHHHHHH-TCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHH
T ss_pred hcccccccccccccccccccccccccchHHHHHHHHHHHhc-CCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHH
Confidence 11122233333221 2348999999999999999998764432
Q ss_pred -----------------------------eeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEEE---
Q 003910 497 -----------------------------AAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN--- 544 (787)
Q Consensus 497 -----------------------------v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~--- 544 (787)
+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+
T Consensus 380 ~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~ 459 (1010)
T 2xgj_A 380 IFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVR 459 (1010)
T ss_dssp HHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSE
T ss_pred HHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCc
Confidence 788999999999999999999999999999999999999999999999
Q ss_pred -ecC----CCCHHHHHHHhhccCCCCC-CCcEEEEEEccc-cHHHHH
Q 003910 545 -FDI----ARDMDMHVHRIGRTGRAGD-KDGTAYTLVTQK-EARFAG 584 (787)
Q Consensus 545 -~d~----p~s~~~y~QriGR~gR~G~-~~G~~i~l~~~~-d~~~~~ 584 (787)
||. |.++..|+||+||+||.|. ..|.||+|+++. +...+.
T Consensus 460 kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~ 506 (1010)
T 2xgj_A 460 KWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAK 506 (1010)
T ss_dssp EECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHH
T ss_pred ccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHH
Confidence 999 8999999999999999993 369999999865 443333
No 34
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=9.4e-42 Score=397.90 Aligned_cols=366 Identities=19% Similarity=0.248 Sum_probs=275.0
Q ss_pred CccccCCCHHHHHH----HHHHcCceeccCCCCCccCCccccCCCHH---HHHHHH-HCCCCCCcHHHHHHHHHHHcCCC
Q 003910 193 SASISGMSEQDVME----YKKSLAIRVSGFDVPRPVKTFEDCGFSTQ---LMHAIS-KQGYEKPTSIQCQALPIILSGRD 264 (787)
Q Consensus 193 ~~~i~~~s~~~~~~----~~~~~~i~v~g~~~P~pi~sf~~~~l~~~---l~~~l~-~~g~~~ptp~Q~~ai~~il~grd 264 (787)
.+.+..|+.+++.. |+..+.-.+.|. +++++ |++. +.++.. ..|+ .|+|+|..++|.+++|+
T Consensus 58 e~~~~~Lsd~eL~~kt~efk~rl~~~~~ge-------~ld~~-lpeafA~vrEa~~R~lG~-rP~~VQ~~~ip~Ll~G~- 127 (922)
T 1nkt_A 58 SDDVEKLTDAELRAKTDEFKRRLADQKNPE-------TLDDL-LPEAFAVAREAAWRVLDQ-RPFDVQVMGAAALHLGN- 127 (922)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHHHCSSSCC-------CHHHH-HHHHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHTTE-
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhcccCC-------CHHHH-HHHHHHHHHHHHHHHcCC-CCCHHHHHHHHhHhcCC-
Confidence 35678888888854 444432211121 23322 2222 122222 3588 99999999999999998
Q ss_pred EEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHH
Q 003910 265 IIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE 344 (787)
Q Consensus 265 vii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~ 344 (787)
|+.++||+|||++|++|++...+. ++.++||+||++||.|+++++..++..+++++.+++||.+... +.
T Consensus 128 -Iaem~TGeGKTLa~~LP~~l~aL~--------g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~--r~ 196 (922)
T 1nkt_A 128 -VAEMKTGEGKTLTCVLPAYLNALA--------GNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDE--RR 196 (922)
T ss_dssp -EEECCTTSCHHHHTHHHHHHHHTT--------TSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHH--HH
T ss_pred -EEEecCCCccHHHHHHHHHHHHHh--------CCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHH--HH
Confidence 999999999999999999765532 4569999999999999999999999999999999999987543 33
Q ss_pred HhcCCcEEEeCHHHH-HHHHHhc------cccccceeEEEEechhhhh-cC---------------CChHHHHHHhhhcC
Q 003910 345 LKAGCEIVIATPGRL-IDMLKMK------ALTMSRVTYLVLDEADRMF-DL---------------GFEPQIRSIVGQIR 401 (787)
Q Consensus 345 l~~~~dIIV~Tp~~L-~~~l~~~------~~~l~~i~~lViDEah~m~-~~---------------~f~~~i~~il~~~~ 401 (787)
+..++||+|+||++| ++++..+ .+.+..+.++||||||+|+ +. +|...+..++..++
T Consensus 197 ~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~~~~~~~y~~i~~iv~~L~ 276 (922)
T 1nkt_A 197 VAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPADGASNWYTEFARLAPLME 276 (922)
T ss_dssp HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEECCCCHHHHHHHHHHHHHSC
T ss_pred HhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCCCcchhHHHHHHHHHHhCc
Confidence 444699999999999 7877653 4667899999999999998 43 47788999999997
Q ss_pred ---------CCceEE-----------------EEeccCcH---HHHHHH--HHHhC-C-------CeEEEeccc------
Q 003910 402 ---------PDRQTL-----------------LFSATMPR---KVEKLA--REILS-D-------PVRVTVGEV------ 436 (787)
Q Consensus 402 ---------~~~q~l-----------------l~SAT~~~---~v~~l~--~~~l~-~-------p~~i~v~~~------ 436 (787)
+.+|++ +||||++. .+...+ ..++. + ...+.+...
T Consensus 277 ~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV~dg~vviVDe~TGR~m~ 356 (922)
T 1nkt_A 277 KDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIVRDGEVLIVDEFTGRVLI 356 (922)
T ss_dssp BTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEECSSCEEEBCSSSCCBCT
T ss_pred ccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccceeeecCceEEEecccCcccC
Confidence 678998 99999764 333332 22222 1 111111110
Q ss_pred -----------------------ccccccceE----------------------------------------------EE
Q 003910 437 -----------------------GMANEDITQ----------------------------------------------VV 447 (787)
Q Consensus 437 -----------------------~~~~~~i~q----------------------------------------------~~ 447 (787)
..+...|.+ ..
T Consensus 357 grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtn~p~~R~d~~d 436 (922)
T 1nkt_A 357 GRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKLGVVSIPTNMPMIREDQSD 436 (922)
T ss_dssp TCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCEEEECCCSSCCCCEECCC
T ss_pred CccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhCCCeEEeCCCCCcccccCCc
Confidence 000001110 00
Q ss_pred EecCCCcchHHHHHHhcCCcC-CCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEE
Q 003910 448 HVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIA 526 (787)
Q Consensus 448 ~~~~~~~~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVa 526 (787)
.+......|+..|+..+.... ...++||||++++.++.|+..|.+.|+++.+|||.+.+.++..+...|+.| .||||
T Consensus 437 ~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G--~VtIA 514 (922)
T 1nkt_A 437 LIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG--GVTVA 514 (922)
T ss_dssp EEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT--CEEEE
T ss_pred EEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEe
Confidence 111234457777777765432 345899999999999999999999999999999999888888788888887 69999
Q ss_pred ehhhhccCCCCCc----------------------------------------------------cEEEEecCCCCHHHH
Q 003910 527 TDVAARGLDIKSI----------------------------------------------------KSVVNFDIARDMDMH 554 (787)
Q Consensus 527 T~v~~rGlDip~v----------------------------------------------------~~VI~~d~p~s~~~y 554 (787)
|++++||+||+.+ .+||+|+.|.+...|
T Consensus 515 TnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy 594 (922)
T 1nkt_A 515 TNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRID 594 (922)
T ss_dssp ETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHH
T ss_pred cchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHH
Confidence 9999999999975 599999999999999
Q ss_pred HHHhhccCCCCCCCcEEEEEEccccHHH
Q 003910 555 VHRIGRTGRAGDKDGTAYTLVTQKEARF 582 (787)
Q Consensus 555 ~QriGR~gR~G~~~G~~i~l~~~~d~~~ 582 (787)
+||+||+||.| .+|.+++|++..|.-+
T Consensus 595 ~qr~GRTGRqG-dpG~s~fflSleD~l~ 621 (922)
T 1nkt_A 595 NQLRGRSGRQG-DPGESRFYLSLGDELM 621 (922)
T ss_dssp HHHHHTSSGGG-CCEEEEEEEETTSHHH
T ss_pred HHHhcccccCC-CCeeEEEEechhHHHH
Confidence 99999999999 6899999999887633
No 35
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.2e-41 Score=405.55 Aligned_cols=345 Identities=20% Similarity=0.251 Sum_probs=258.9
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHHHHcC------CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcH
Q 003910 235 QLMHAISKQGYEKPTSIQCQALPIILSG------RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTR 308 (787)
Q Consensus 235 ~l~~~l~~~g~~~ptp~Q~~ai~~il~g------rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~Ptr 308 (787)
.+...+...+| .||++|.++|+.++.+ +++|++++||||||++|++|++..+. .++++|||+||+
T Consensus 357 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~--------~g~qvlvlaPtr 427 (780)
T 1gm5_A 357 LAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYE--------AGFQTAFMVPTS 427 (780)
T ss_dssp HHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHH--------HTSCEEEECSCH
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHH--------cCCeEEEEeCcH
Confidence 34445577899 8999999999999875 59999999999999999999998873 357799999999
Q ss_pred HHHHHHHHHHHHHhhhcCceEEEEECCCChHHH---HHHHhcC-CcEEEeCHHHHHHHHHhccccccceeEEEEechhhh
Q 003910 309 ELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ---FKELKAG-CEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRM 384 (787)
Q Consensus 309 eLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~---~~~l~~~-~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m 384 (787)
+||.|+++.+.+++...++++.+++|+...... +..+..+ ++|||+||+.|.+ .+.+.++++|||||+|++
T Consensus 428 ~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr~ 502 (780)
T 1gm5_A 428 ILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRF 502 (780)
T ss_dssp HHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC
T ss_pred HHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccchh
Confidence 999999999999998889999999999876553 4445554 9999999987754 456889999999999995
Q ss_pred hcCCChHHHHHHhhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcchHHHHHHhc
Q 003910 385 FDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKL 464 (787)
Q Consensus 385 ~~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L 464 (787)
.. ..+..+.......|+++||||+.+... ...++.+.....+.........+...+ + ...+...++..+
T Consensus 503 g~-----~qr~~l~~~~~~~~vL~mSATp~p~tl--~~~~~g~~~~s~i~~~p~~r~~i~~~~--~--~~~~~~~l~~~i 571 (780)
T 1gm5_A 503 GV-----KQREALMNKGKMVDTLVMSATPIPRSM--ALAFYGDLDVTVIDEMPPGRKEVQTML--V--PMDRVNEVYEFV 571 (780)
T ss_dssp ----------CCCCSSSSCCCEEEEESSCCCHHH--HHHHTCCSSCEEECCCCSSCCCCEECC--C--CSSTHHHHHHHH
T ss_pred hH-----HHHHHHHHhCCCCCEEEEeCCCCHHHH--HHHHhCCcceeeeeccCCCCcceEEEE--e--ccchHHHHHHHH
Confidence 32 122333344457899999999766543 333444433333332222222333221 1 123344444444
Q ss_pred CCc-CCCCCEEEEecccc--------cHHHHHHHHHH---cCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhc
Q 003910 465 PGM-IDDGDVLVFASKKT--------TVDEIESQLAQ---KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAAR 532 (787)
Q Consensus 465 ~~~-~~~~kvLVF~~s~~--------~a~~l~~~L~~---~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~r 532 (787)
... ....+++|||+... .++.+++.|.. .++.+..+||+|++.+|..+++.|++|+++|||||+++++
T Consensus 572 ~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~ 651 (780)
T 1gm5_A 572 RQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEV 651 (780)
T ss_dssp HHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCS
T ss_pred HHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCc
Confidence 332 24568999999764 47788888887 4789999999999999999999999999999999999999
Q ss_pred cCCCCCccEEEEecCCC-CHHHHHHHhhccCCCCCCCcEEEEEEccccHHHHHHHHHHHHHcCCCccHHHHHHHH
Q 003910 533 GLDIKSIKSVVNFDIAR-DMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLAM 606 (787)
Q Consensus 533 GlDip~v~~VI~~d~p~-s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~l~~~~~~vp~~l~~~a~ 606 (787)
|||+|++++||++++|. +...|.||+||+||.| +.|.|++++++.+ ......++.+......+.....++..
T Consensus 652 GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g-~~g~~ill~~~~~-~~~~~rl~~l~~~~dgf~iae~dL~~ 724 (780)
T 1gm5_A 652 GIDVPRANVMVIENPERFGLAQLHQLRGRVGRGG-QEAYCFLVVGDVG-EEAMERLRFFTLNTDGFKIAEYDLKT 724 (780)
T ss_dssp CSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSS-TTCEEECCCCSCC-HHHHHHHHHHHTCCCSHHHHHHHHHS
T ss_pred cccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCC-CCCEEEEEECCCC-hHHHHHHHHHHhhhccchhhHhhHhc
Confidence 99999999999999996 6888999999999998 6799999988433 34445566677766666555555543
No 36
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=4.5e-42 Score=411.40 Aligned_cols=325 Identities=23% Similarity=0.306 Sum_probs=228.6
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHH-HHHHHHHhhh
Q 003910 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQI-YLETKKFAKS 324 (787)
Q Consensus 246 ~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi-~~~~~~~~~~ 324 (787)
.+|+|+|.+++++++.++++|++++||+|||++|++|++.++...+. ...++++|||+||++|+.|| ++++++++..
T Consensus 6 ~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~--~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~ 83 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK--ASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 83 (699)
T ss_dssp -CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH--HTCCCCBCCEESCSHHHHHHHHHTHHHHHTT
T ss_pred CCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc--cCCCCeEEEEECCHHHHHHHHHHHHHHHcCc
Confidence 47999999999999999999999999999999999999988765321 12236789999999999999 9999999874
Q ss_pred cCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHH------HhccccccceeEEEEechhhhhcCCC-hHHHHHHh
Q 003910 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDML------KMKALTMSRVTYLVLDEADRMFDLGF-EPQIRSIV 397 (787)
Q Consensus 325 ~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l------~~~~~~l~~i~~lViDEah~m~~~~f-~~~i~~il 397 (787)
++++..++|+.........+...++|||+||++|...+ ....+.+..+++|||||||++....+ ...+..++
T Consensus 84 -~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l 162 (699)
T 4gl2_A 84 -WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYL 162 (699)
T ss_dssp -TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHH
T ss_pred -CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHH
Confidence 48999999998877666777778999999999999988 44456788999999999999865443 33333232
Q ss_pred hh----cC---------CCceEEEEeccCcH-----------HHHHHHHHHhC------------------CCeEEEecc
Q 003910 398 GQ----IR---------PDRQTLLFSATMPR-----------KVEKLAREILS------------------DPVRVTVGE 435 (787)
Q Consensus 398 ~~----~~---------~~~q~ll~SAT~~~-----------~v~~l~~~~l~------------------~p~~i~v~~ 435 (787)
.. .. +..|+|+||||+.. .+..++..+-. .|.......
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~ 242 (699)
T 4gl2_A 163 MQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIA 242 (699)
T ss_dssp HHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEE
T ss_pred HhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEc
Confidence 22 11 67899999999986 22222222211 121111100
Q ss_pred cccccc-----------------cc---eE--------------------------------------------------
Q 003910 436 VGMANE-----------------DI---TQ-------------------------------------------------- 445 (787)
Q Consensus 436 ~~~~~~-----------------~i---~q-------------------------------------------------- 445 (787)
...... .+ ..
T Consensus 243 ~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 322 (699)
T 4gl2_A 243 DATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDA 322 (699)
T ss_dssp C-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred ccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 00 00
Q ss_pred -------------------------------------------------EEEecCCCcchHHHHHHhcCCcC---C-CCC
Q 003910 446 -------------------------------------------------VVHVIPSDAEKLPWLLEKLPGMI---D-DGD 472 (787)
Q Consensus 446 -------------------------------------------------~~~~~~~~~~k~~~L~~~L~~~~---~-~~k 472 (787)
..........|+..|.++|.... . .++
T Consensus 323 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~ 402 (699)
T 4gl2_A 323 YTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESAR 402 (699)
T ss_dssp HHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCC
T ss_pred HHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCc
Confidence 00000001122222233332211 2 679
Q ss_pred EEEEecccccHHHHHHHHHHc------CCceeeccCC--------CCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCC
Q 003910 473 VLVFASKKTTVDEIESQLAQK------GFKAAALHGD--------KDQASRMEILQKFKSGVYHVLIATDVAARGLDIKS 538 (787)
Q Consensus 473 vLVF~~s~~~a~~l~~~L~~~------g~~v~~lhg~--------~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~ 538 (787)
+||||+++..++.|+++|... |+.+..+||+ |++.+|..+++.|++|+++|||||+++++|||+|+
T Consensus 403 ~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~ 482 (699)
T 4gl2_A 403 GIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKE 482 (699)
T ss_dssp EEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCS
T ss_pred EEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCcccc
Confidence 999999999999999999987 8999999999 99999999999999999999999999999999999
Q ss_pred ccEEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEcc
Q 003910 539 IKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ 577 (787)
Q Consensus 539 v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~ 577 (787)
|++||+||+|+|+..|+||+||+||. |.+++|+..
T Consensus 483 v~~VI~~d~p~s~~~~~Qr~GRArr~----g~~~~l~~~ 517 (699)
T 4gl2_A 483 CNIVIRYGLVTNEIAMVQARGRARAD----ESTYVLVAH 517 (699)
T ss_dssp CCCCEEESCCCCHHHHHHHHTTSCSS----SCEEEEEEE
T ss_pred CCEEEEeCCCCCHHHHHHHcCCCCCC----CceEEEEEe
Confidence 99999999999999999999997654 345555544
No 37
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=1.4e-39 Score=338.77 Aligned_cols=239 Identities=47% Similarity=0.832 Sum_probs=223.2
Q ss_pred CCCHHHHHHHHHHcCceeccCCCCCccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhH
Q 003910 198 GMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTA 277 (787)
Q Consensus 198 ~~s~~~~~~~~~~~~i~v~g~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTl 277 (787)
.++++++..+++...|.+.|...|+|+.+|.+++|++.+++.|.+.||..|+|+|.++|+.+++++|+++++|||+|||+
T Consensus 2 ~~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~ 81 (242)
T 3fe2_A 2 MRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTL 81 (242)
T ss_dssp ----CHHHHHHHHHTEEEESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHH
T ss_pred CCCHHHHHHHHhcCceEEeCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHH
Confidence 35677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHH
Q 003910 278 AFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPG 357 (787)
Q Consensus 278 a~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~ 357 (787)
+|++|++.++...+......++++|||+||++|+.|+++.+++++...++++.+++||.....+...+..+++|+|+||+
T Consensus 82 ~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~ 161 (242)
T 3fe2_A 82 SYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPG 161 (242)
T ss_dssp HHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHH
T ss_pred HHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHH
Confidence 99999999998766555567889999999999999999999999999999999999999999888888889999999999
Q ss_pred HHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEEeccc
Q 003910 358 RLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEV 436 (787)
Q Consensus 358 ~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~ 436 (787)
+|.+++......+.++++|||||||+|.+++|...+..++..+++.+|+++||||+|+.+..+++.++.+|+.+.++..
T Consensus 162 ~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 162 RLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp HHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred HHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 9999998888889999999999999999999999999999999999999999999999999999999999999988643
No 38
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=6.1e-39 Score=399.18 Aligned_cols=336 Identities=18% Similarity=0.235 Sum_probs=261.6
Q ss_pred cCCCHHHHHHHHHC-CCCCCcHHHHHHHHHHHc----CC--CEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEE
Q 003910 230 CGFSTQLMHAISKQ-GYEKPTSIQCQALPIILS----GR--DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV 302 (787)
Q Consensus 230 ~~l~~~l~~~l~~~-g~~~ptp~Q~~ai~~il~----gr--dvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vL 302 (787)
+.++..+.+.+... +|. |||+|.++|+.++. ++ |+|++++||+|||++|+++++..+. .++++|
T Consensus 586 ~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~--------~g~~vl 656 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD--------NHKQVA 656 (1151)
T ss_dssp CCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT--------TTCEEE
T ss_pred CCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH--------hCCeEE
Confidence 35667777777554 664 79999999999986 66 9999999999999999999887763 367899
Q ss_pred EEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHH---HHHHhcC-CcEEEeCHHHHHHHHHhccccccceeEEEE
Q 003910 303 ICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ---FKELKAG-CEIVIATPGRLIDMLKMKALTMSRVTYLVL 378 (787)
Q Consensus 303 Il~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~---~~~l~~~-~dIIV~Tp~~L~~~l~~~~~~l~~i~~lVi 378 (787)
|||||++||.||++.+.+++...++++.++.+....... +..+..+ ++|||+||+.|. ..+.+.++++|||
T Consensus 657 vlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 657 VLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIV 731 (1151)
T ss_dssp EECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEE
T ss_pred EEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEE
Confidence 999999999999999999988778899888887665443 3445554 999999997663 3456889999999
Q ss_pred echhhhhcCCChHHHHHHhhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcchHH
Q 003910 379 DEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLP 458 (787)
Q Consensus 379 DEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~ 458 (787)
||||+ |......++..++...++|+||||+++....++...+.++..+.. .......+...+... .+..
T Consensus 732 DEaH~-----~g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~--~~~~r~~i~~~~~~~----~~~~ 800 (1151)
T 2eyq_A 732 DEEHR-----FGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIAT--PPARRLAVKTFVREY----DSMV 800 (1151)
T ss_dssp ESGGG-----SCHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCC--CCCBCBCEEEEEEEC----CHHH
T ss_pred echHh-----cChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEec--CCCCccccEEEEecC----CHHH
Confidence 99999 455667777778888999999999877766665555544433221 222222333333322 1222
Q ss_pred HHHHhcCCcCCCCCEEEEecccccHHHHHHHHHHc--CCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCC
Q 003910 459 WLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK--GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDI 536 (787)
Q Consensus 459 ~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~--g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDi 536 (787)
.+..++......+++||||+++..++.+++.|... ++.+..+||+|++.+|+.+++.|++|+++|||||+++++|||+
T Consensus 801 i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDi 880 (1151)
T 2eyq_A 801 VREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDI 880 (1151)
T ss_dssp HHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCC
T ss_pred HHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecc
Confidence 22222233335679999999999999999999987 7899999999999999999999999999999999999999999
Q ss_pred CCccEEEEecC-CCCHHHHHHHhhccCCCCCCCcEEEEEEcccc--HHHHHHHHHHHH
Q 003910 537 KSIKSVVNFDI-ARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKE--ARFAGELVNSLI 591 (787)
Q Consensus 537 p~v~~VI~~d~-p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d--~~~~~~l~~~l~ 591 (787)
|++++||+++. ++++..|+||+||+||.| +.|.||+++.+.+ ...+...++.+.
T Consensus 881 p~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g-~~g~~~ll~~~~~~l~~~~~~rl~~i~ 937 (1151)
T 2eyq_A 881 PTANTIIIERADHFGLAQLHQLRGRVGRSH-HQAYAWLLTPHPKAMTTDAQKRLEAIA 937 (1151)
T ss_dssp TTEEEEEETTTTSSCHHHHHHHHTTCCBTT-BCEEEEEEECCGGGSCHHHHHHHHHHT
T ss_pred cCCcEEEEeCCCCCCHHHHHHHHhccCcCC-CceEEEEEECCccccCHHHHHHHHHHH
Confidence 99999999998 579999999999999999 6799999987643 233334444443
No 39
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=1.7e-39 Score=398.71 Aligned_cols=308 Identities=20% Similarity=0.237 Sum_probs=245.1
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcC
Q 003910 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (787)
Q Consensus 247 ~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~ 326 (787)
.|+|+|.++|+.+++++++|++++||+|||++|+++++..+ ..++++||++||++|+.|+++.+++++. +
T Consensus 39 ~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~--------~~g~~vlvl~PtraLa~Q~~~~l~~~~~--~ 108 (997)
T 4a4z_A 39 ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAH--------RNMTKTIYTSPIKALSNQKFRDFKETFD--D 108 (997)
T ss_dssp CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHH--------HTTCEEEEEESCGGGHHHHHHHHHTTC----
T ss_pred CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHH--------hcCCeEEEEeCCHHHHHHHHHHHHHHcC--C
Confidence 48999999999999999999999999999999999988765 2367899999999999999999998764 6
Q ss_pred ceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHhhhcCCCceE
Q 003910 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQT 406 (787)
Q Consensus 327 i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ 406 (787)
+++..++|+..... .++|+|+||++|.+++......+..+.+|||||||++.+++|...+..++..+++..|+
T Consensus 109 ~~v~~l~G~~~~~~-------~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~i 181 (997)
T 4a4z_A 109 VNIGLITGDVQINP-------DANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKF 181 (997)
T ss_dssp CCEEEECSSCEECT-------TSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEE
T ss_pred CeEEEEeCCCccCC-------CCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCCE
Confidence 78888998876443 38999999999999998877778999999999999999999999999999999999999
Q ss_pred EEEeccCcHHHHHHHHHHhC---CCeEEEecccccccccceEEEE-------e---------------------------
Q 003910 407 LLFSATMPRKVEKLAREILS---DPVRVTVGEVGMANEDITQVVH-------V--------------------------- 449 (787)
Q Consensus 407 ll~SAT~~~~v~~l~~~~l~---~p~~i~v~~~~~~~~~i~q~~~-------~--------------------------- 449 (787)
|+||||+++.. +++.++.. .+..+...... ...+.+.+. .
T Consensus 182 IlLSAT~~n~~-ef~~~l~~~~~~~~~vi~~~~r--~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 258 (997)
T 4a4z_A 182 ILLSATVPNTY-EFANWIGRTKQKNIYVISTPKR--PVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGA 258 (997)
T ss_dssp EEEECCCTTHH-HHHHHHHHHHTCCEEEEECSSC--SSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-------
T ss_pred EEEcCCCCChH-HHHHHHhcccCCceEEEecCCC--CccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccccc
Confidence 99999998664 56655542 22222111110 111111110 0
Q ss_pred ----------------------------------------------------------cCCCcchHHHHHHhcCCcCCCC
Q 003910 450 ----------------------------------------------------------IPSDAEKLPWLLEKLPGMIDDG 471 (787)
Q Consensus 450 ----------------------------------------------------------~~~~~~k~~~L~~~L~~~~~~~ 471 (787)
......++..++..+... ...
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~-~~~ 337 (997)
T 4a4z_A 259 PSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKR-ELL 337 (997)
T ss_dssp ----------------------------------------------------------CCCCTTHHHHHHHHHHHT-TCC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhC-CCC
Confidence 001122344555555432 346
Q ss_pred CEEEEecccccHHHHHHHHHHcCC---------------------------------------ceeeccCCCCHHHHHHH
Q 003910 472 DVLVFASKKTTVDEIESQLAQKGF---------------------------------------KAAALHGDKDQASRMEI 512 (787)
Q Consensus 472 kvLVF~~s~~~a~~l~~~L~~~g~---------------------------------------~v~~lhg~~~~~eR~~~ 512 (787)
++||||+++..|+.++..|...++ .+..+||+|++.+|..+
T Consensus 338 ~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v 417 (997)
T 4a4z_A 338 PMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELI 417 (997)
T ss_dssp SEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHH
T ss_pred CEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHH
Confidence 999999999999999999976555 47899999999999999
Q ss_pred HHHhhcCCccEEEEehhhhccCCCCCccEEEEecCCC---------CHHHHHHHhhccCCCC-CCCcEEEEEEc
Q 003910 513 LQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIAR---------DMDMHVHRIGRTGRAG-DKDGTAYTLVT 576 (787)
Q Consensus 513 l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~~d~p~---------s~~~y~QriGR~gR~G-~~~G~~i~l~~ 576 (787)
++.|++|.++|||||+++++|||+|+ ..||+++.+. ++..|+||+|||||.| ...|.||+++.
T Consensus 418 ~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~ 490 (997)
T 4a4z_A 418 EILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAY 490 (997)
T ss_dssp HHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECC
T ss_pred HHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecC
Confidence 99999999999999999999999999 5555544444 9999999999999998 45688888883
No 40
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=5.2e-41 Score=393.11 Aligned_cols=322 Identities=16% Similarity=0.161 Sum_probs=240.0
Q ss_pred cCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHH
Q 003910 230 CGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRE 309 (787)
Q Consensus 230 ~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~Ptre 309 (787)
+++++.+++.|... ...|+|+|+++++.+++++|+|++++||||||++|++|++..+.. .++++|||+|||+
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~-------~~~~vLvl~Ptre 226 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK-------RRLRTLILAPTRV 226 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-------TTCCEEEEESSHH
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh-------CCCeEEEEcChHH
Confidence 44555555555443 478999999899999999999999999999999999999998854 3578999999999
Q ss_pred HHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCC
Q 003910 310 LAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGF 389 (787)
Q Consensus 310 La~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f 389 (787)
||.|+++.++ ++.+. +.+..... ....+..|.++|.+.|...+... ..+.++++|||||||+| +.+|
T Consensus 227 La~Qi~~~l~------~~~v~-~~~~~l~~----~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~ 293 (618)
T 2whx_A 227 VAAEMEEALR------GLPIR-YQTPAVKS----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCS 293 (618)
T ss_dssp HHHHHHHHTT------TSCEE-ECCTTSSC----CCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SHHH
T ss_pred HHHHHHHHhc------CCcee-Eeccccee----ccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-CccH
Confidence 9999988776 23333 22211000 00123567788999888766544 45889999999999998 6677
Q ss_pred hHHHHHHhhhcC-CCceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcchHHHHHHhcCCcC
Q 003910 390 EPQIRSIVGQIR-PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI 468 (787)
Q Consensus 390 ~~~i~~il~~~~-~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~ 468 (787)
...+..++..++ +++|+|+||||++..+..++. .++..+.+... ++. .++..++..|.+
T Consensus 294 ~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~-------------~~~--~~~~~ll~~l~~-- 353 (618)
T 2whx_A 294 VAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIERE-------------IPE--RSWNTGFDWITD-- 353 (618)
T ss_dssp HHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECC-------------CCS--SCCSSSCHHHHH--
T ss_pred HHHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeeccc-------------CCH--HHHHHHHHHHHh--
Confidence 778888877765 789999999999876543222 23333332211 010 111111112221
Q ss_pred CCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEE------
Q 003910 469 DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSV------ 542 (787)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~V------ 542 (787)
..+++||||+++..++.+++.|...++.+..+||. +|.++++.|++|+++|||||+++++||||+ +++|
T Consensus 354 ~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~ 428 (618)
T 2whx_A 354 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRC 428 (618)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEE
T ss_pred CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcce
Confidence 25699999999999999999999999999999984 688899999999999999999999999997 8888
Q ss_pred --------------EEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEc---cccHHHHHHHHHHHHHcCCCc
Q 003910 543 --------------VNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVT---QKEARFAGELVNSLIAAGQNV 597 (787)
Q Consensus 543 --------------I~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~---~~d~~~~~~l~~~l~~~~~~v 597 (787)
|+|++|.+..+|+||+||+||.|.+.|.||+|++ +.|...+..+...+......+
T Consensus 429 ~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i~l~~~~~ 500 (618)
T 2whx_A 429 LKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYT 500 (618)
T ss_dssp EEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCC
T ss_pred ecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHhccccccC
Confidence 8888999999999999999999856899999998 777777777766654444444
No 41
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=4.6e-38 Score=401.74 Aligned_cols=344 Identities=15% Similarity=0.194 Sum_probs=262.6
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC-CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHH
Q 003910 232 FSTQLMHAISKQGYEKPTSIQCQALPIILSG-RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTREL 310 (787)
Q Consensus 232 l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~g-rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreL 310 (787)
|.+...+.|...+|..++|+|.++++.++.+ +|++++||||||||++|.+|++.++... .+.++|||+||++|
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~------~~~kavyi~P~raL 984 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS------SEGRCVYITPMEAL 984 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC------TTCCEEEECSCHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC------CCCEEEEEcChHHH
Confidence 5566778888889999999999999999865 6899999999999999999999998654 35679999999999
Q ss_pred HHHHHHHHHHH-hhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHh--ccccccceeEEEEechhhhhcC
Q 003910 311 AHQIYLETKKF-AKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM--KALTMSRVTYLVLDEADRMFDL 387 (787)
Q Consensus 311 a~Qi~~~~~~~-~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~--~~~~l~~i~~lViDEah~m~~~ 387 (787)
|.|+++.+++. ....+++|..++|+...... ....++||||||++|..++.+ ....+.++.+|||||+|.|.+.
T Consensus 985 a~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~ 1061 (1724)
T 4f92_B 985 AEQVYMDWYEKFQDRLNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE 1061 (1724)
T ss_dssp HHHHHHHHHHHHTTTSCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST
T ss_pred HHHHHHHHHHHhchhcCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC
Confidence 99999999764 45578999988887543222 234589999999999877754 2334788999999999988764
Q ss_pred CChHHHHHHhh-------hcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcch----
Q 003910 388 GFEPQIRSIVG-------QIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEK---- 456 (787)
Q Consensus 388 ~f~~~i~~il~-------~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k---- 456 (787)
....+..++. .+++..|+|+||||+++ .++++.|+...+..+..-........+...+.........
T Consensus 1062 -rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~ 1139 (1724)
T 4f92_B 1062 -NGPVLEVICSRMRYISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLL 1139 (1724)
T ss_dssp -THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHH
T ss_pred -CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhh
Confidence 5555554443 34578999999999985 5788888765543332222222222333433333221111
Q ss_pred --HHHHHHhcCCcCCCCCEEEEecccccHHHHHHHHHHc----------------------------------CCceeec
Q 003910 457 --LPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK----------------------------------GFKAAAL 500 (787)
Q Consensus 457 --~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~----------------------------------g~~v~~l 500 (787)
...+...+......+++||||+++..|+.++..|... ...++.+
T Consensus 1140 ~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~h 1219 (1724)
T 4f92_B 1140 SMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYL 1219 (1724)
T ss_dssp TTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEE
T ss_pred hhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEE
Confidence 1122333334445679999999999999888776431 2358899
Q ss_pred cCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEEE----ec------CCCCHHHHHHHhhccCCCC-CCCc
Q 003910 501 HGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN----FD------IARDMDMHVHRIGRTGRAG-DKDG 569 (787)
Q Consensus 501 hg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~----~d------~p~s~~~y~QriGR~gR~G-~~~G 569 (787)
|++|++.+|..+.+.|++|.++|||||+++++|||+|...+||. || .|.++.+|+||+|||||.| ...|
T Consensus 1220 HagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G 1299 (1724)
T 4f92_B 1220 HEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEG 1299 (1724)
T ss_dssp CTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCE
T ss_pred CCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCce
Confidence 99999999999999999999999999999999999999888883 33 3678999999999999999 3479
Q ss_pred EEEEEEccccHHHHHHH
Q 003910 570 TAYTLVTQKEARFAGEL 586 (787)
Q Consensus 570 ~~i~l~~~~d~~~~~~l 586 (787)
.|++++.+.+..++..+
T Consensus 1300 ~avll~~~~~~~~~~~l 1316 (1724)
T 4f92_B 1300 RCVIMCQGSKKDFFKKF 1316 (1724)
T ss_dssp EEEEEEEGGGHHHHHHH
T ss_pred EEEEEecchHHHHHHHH
Confidence 99999998887766554
No 42
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=1.6e-39 Score=374.96 Aligned_cols=311 Identities=17% Similarity=0.148 Sum_probs=235.0
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhc
Q 003910 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (787)
Q Consensus 246 ~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~ 325 (787)
.+|+|+|.++++.++.++++|++++||+|||++|+++++..+.. .++++|||+||++|+.||+++++++....
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-------~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~ 184 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-------YEGKILIIVPTTALTTQMADDFVDYRLFS 184 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH-------CSSEEEEEESSHHHHHHHHHHHHHTTSSC
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC-------CCCeEEEEECcHHHHHHHHHHHHHhhcCC
Confidence 48999999999999999999999999999999999998877642 23489999999999999999999986555
Q ss_pred CceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHhhhcCCCce
Q 003910 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 405 (787)
Q Consensus 326 ~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q 405 (787)
++.+..++++.....+ +...++|+|+||+.|... ....+.++++|||||||++.. ..+..++..+.+..+
T Consensus 185 ~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~---~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~~ 254 (510)
T 2oca_A 185 HAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMF 254 (510)
T ss_dssp GGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCCE
T ss_pred ccceEEEecCCccccc---cccCCcEEEEeHHHHhhc---hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCcE
Confidence 6788888888776654 445699999999976542 335578899999999999775 567788888888899
Q ss_pred EEEEeccCcHHHHHHHH-HHhCCCeEEEecccc------cccccceEEEEecC--------------------CCcchHH
Q 003910 406 TLLFSATMPRKVEKLAR-EILSDPVRVTVGEVG------MANEDITQVVHVIP--------------------SDAEKLP 458 (787)
Q Consensus 406 ~ll~SAT~~~~v~~l~~-~~l~~p~~i~v~~~~------~~~~~i~q~~~~~~--------------------~~~~k~~ 458 (787)
+|+||||+++....+.. ..+..+..+.+.... .....+.......+ ....+..
T Consensus 255 ~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (510)
T 2oca_A 255 KFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNK 334 (510)
T ss_dssp EEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHH
T ss_pred EEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHH
Confidence 99999999776433221 112223222211110 00011111111110 1112223
Q ss_pred HHHHhcCCcCC-CC-CEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEe-hhhhccCC
Q 003910 459 WLLEKLPGMID-DG-DVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIAT-DVAARGLD 535 (787)
Q Consensus 459 ~L~~~L~~~~~-~~-kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT-~v~~rGlD 535 (787)
.+.+.+..... .+ ++||||+ ...++.|++.|...+..+..+||++++.+|..+++.|++|+++||||| +++++|+|
T Consensus 335 ~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiD 413 (510)
T 2oca_A 335 WIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGIS 413 (510)
T ss_dssp HHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCC
T ss_pred HHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccc
Confidence 33443333222 23 5666666 889999999999988899999999999999999999999999999999 99999999
Q ss_pred CCCccEEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEE
Q 003910 536 IKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLV 575 (787)
Q Consensus 536 ip~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~ 575 (787)
+|++++||++++|+++..|+||+||+||.|+ .+.+++++
T Consensus 414 ip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~-~~~~v~i~ 452 (510)
T 2oca_A 414 VKNLHHVVLAHGVKSKIIVLQTIGRVLRKHG-SKTIATVW 452 (510)
T ss_dssp CCSEEEEEESSCCCSCCHHHHHHHHHHTTTC-CCCCCEEE
T ss_pred cccCcEEEEeCCCCCHHHHHHHHhcccccCC-CCceEEEE
Confidence 9999999999999999999999999999994 34344443
No 43
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.3e-37 Score=397.57 Aligned_cols=337 Identities=19% Similarity=0.271 Sum_probs=259.0
Q ss_pred CCCCCcHHHHHHHHHHH-cCCCEEEEccCCCchhHHHHHHHHHHHhcCccc---ccCCCCEEEEEcCcHHHHHHHHHHHH
Q 003910 244 GYEKPTSIQCQALPIIL-SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPEL---QKEEGPIGVICAPTRELAHQIYLETK 319 (787)
Q Consensus 244 g~~~ptp~Q~~ai~~il-~grdvii~a~TGsGKTla~llp~l~~l~~~~~~---~~~~~p~vLIl~PtreLa~Qi~~~~~ 319 (787)
||.+|+++|.+++|.++ .++|+|++||||||||++|.++++..+...... ....+.++|+|+|+++||.|+++.++
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 78999999999999987 578999999999999999999999999764321 22357789999999999999999999
Q ss_pred HHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhc--cccccceeEEEEechhhhhcCCChHHHHHHh
Q 003910 320 KFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK--ALTMSRVTYLVLDEADRMFDLGFEPQIRSIV 397 (787)
Q Consensus 320 ~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~--~~~l~~i~~lViDEah~m~~~~f~~~i~~il 397 (787)
+.+...|++|..++|+...... ....++||||||++|..++.+. ...+..+.+|||||+|.+.+ .....+..++
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l 231 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALV 231 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHH
Confidence 9998889999999998765432 1245899999999986665442 22378899999999997765 4565555544
Q ss_pred h-------hcCCCceEEEEeccCcHHHHHHHHHHhCCCe--EEEecccccccccceEEEEecCCCc--chH----HHHHH
Q 003910 398 G-------QIRPDRQTLLFSATMPRKVEKLAREILSDPV--RVTVGEVGMANEDITQVVHVIPSDA--EKL----PWLLE 462 (787)
Q Consensus 398 ~-------~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~--~i~v~~~~~~~~~i~q~~~~~~~~~--~k~----~~L~~ 462 (787)
. .+++..|+|++|||+|+ .++++.++-.++. ...+. ....+..+.+.+..+.... .+. ..+.+
T Consensus 232 ~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~-~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (1724)
T 4f92_B 232 ARAIRNIEMTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFD-NSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYE 309 (1724)
T ss_dssp HHHHHHHHHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECC-GGGCSSCEEEECCEECCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEEC-CCCccCccEEEEeccCCcchhhhhHHHHHHHHH
Confidence 3 34678999999999985 5777877654431 11111 1112223444443332211 111 22344
Q ss_pred hcCCcCCCCCEEEEecccccHHHHHHHHHHc-------------------------------------CCceeeccCCCC
Q 003910 463 KLPGMIDDGDVLVFASKKTTVDEIESQLAQK-------------------------------------GFKAAALHGDKD 505 (787)
Q Consensus 463 ~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~-------------------------------------g~~v~~lhg~~~ 505 (787)
.+.+....+++||||+++..|+.++..|.+. ...++.+||+|+
T Consensus 310 ~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~ 389 (1724)
T 4f92_B 310 KIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMT 389 (1724)
T ss_dssp HHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSC
T ss_pred HHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCC
Confidence 4555556679999999999999999888642 234789999999
Q ss_pred HHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEEE----ecC------CCCHHHHHHHhhccCCCC-CCCcEEEEE
Q 003910 506 QASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN----FDI------ARDMDMHVHRIGRTGRAG-DKDGTAYTL 574 (787)
Q Consensus 506 ~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~----~d~------p~s~~~y~QriGR~gR~G-~~~G~~i~l 574 (787)
+.+|..+.+.|++|.++|||||+++++|||+|.+++||. |++ |-++.+|+||+|||||.| ...|.+|++
T Consensus 390 ~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~ 469 (1724)
T 4f92_B 390 RVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILI 469 (1724)
T ss_dssp THHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEE
T ss_pred HHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEE
Confidence 999999999999999999999999999999999999984 554 458999999999999998 457999999
Q ss_pred EccccHHHHHHH
Q 003910 575 VTQKEARFAGEL 586 (787)
Q Consensus 575 ~~~~d~~~~~~l 586 (787)
..+.+...+..+
T Consensus 470 ~~~~~~~~~~~l 481 (1724)
T 4f92_B 470 TSHGELQYYLSL 481 (1724)
T ss_dssp EESTTCCHHHHH
T ss_pred ecchhHHHHHHH
Confidence 988876665544
No 44
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=5.7e-39 Score=364.36 Aligned_cols=288 Identities=16% Similarity=0.170 Sum_probs=216.6
Q ss_pred CCCCCcHHHHHHHHHHHcCCCE-EEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHh
Q 003910 244 GYEKPTSIQCQALPIILSGRDI-IGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (787)
Q Consensus 244 g~~~ptp~Q~~ai~~il~grdv-ii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~ 322 (787)
|+.+|+|+|. +||.+++++++ |++++||||||++|++|++.++.. .++++|||+||++||.|+++.+.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~-------~~~~~lvl~Ptr~La~Q~~~~l~--- 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL-------RRLRTLILAPTRVVAAEMEEALR--- 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTT---
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh-------cCCcEEEECCCHHHHHHHHHHhc---
Confidence 6788999985 79999999887 889999999999999999988754 35789999999999999988774
Q ss_pred hhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHhh-hcC
Q 003910 323 KSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVG-QIR 401 (787)
Q Consensus 323 ~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~-~~~ 401 (787)
++.+......... ....+..|.++|++.|...+... ..+.++++|||||||++ +..+...+..+.. ...
T Consensus 70 ---g~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~ 139 (451)
T 2jlq_A 70 ---GLPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEM 139 (451)
T ss_dssp ---TSCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHT
T ss_pred ---Cceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcC
Confidence 3433322221111 11234679999999998877544 55889999999999986 3333332222222 235
Q ss_pred CCceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcchHHHHHHhcCCcCCCCCEEEEecccc
Q 003910 402 PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKT 481 (787)
Q Consensus 402 ~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~ 481 (787)
+++|+++||||++..+.. .+..++..+.+.... .. . .......++.+ ..+++||||+++.
T Consensus 140 ~~~~~i~~SAT~~~~~~~---~~~~~~~~~~~~~~~-p~----~------~~~~~~~~l~~------~~~~~lVF~~s~~ 199 (451)
T 2jlq_A 140 GEAAAIFMTATPPGSTDP---FPQSNSPIEDIEREI-PE----R------SWNTGFDWITD------YQGKTVWFVPSIK 199 (451)
T ss_dssp TSCEEEEECSSCTTCCCS---SCCCSSCEEEEECCC-CS----S------CCSSSCHHHHH------CCSCEEEECSSHH
T ss_pred CCceEEEEccCCCccchh---hhcCCCceEecCccC-Cc----h------hhHHHHHHHHh------CCCCEEEEcCCHH
Confidence 689999999999875422 223334333332100 00 0 00112223322 2569999999999
Q ss_pred cHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEEEec---------------
Q 003910 482 TVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFD--------------- 546 (787)
Q Consensus 482 ~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~~d--------------- 546 (787)
.++.++..|...++.+..+|+.+. ..+++.|++|+++|||||+++++|||||+ ++||+||
T Consensus 200 ~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l 274 (451)
T 2jlq_A 200 AGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERV 274 (451)
T ss_dssp HHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEE
T ss_pred HHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCccccccccccccee
Confidence 999999999999999999999764 57899999999999999999999999999 9999998
Q ss_pred -----CCCCHHHHHHHhhccCCCCCCCcEEEEEEcc
Q 003910 547 -----IARDMDMHVHRIGRTGRAGDKDGTAYTLVTQ 577 (787)
Q Consensus 547 -----~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~ 577 (787)
.|.+..+|+||+||+||.|...|.|++|+..
T Consensus 275 ~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 275 ILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp EEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred eecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 9999999999999999999547899888644
No 45
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=4.8e-38 Score=359.17 Aligned_cols=295 Identities=21% Similarity=0.225 Sum_probs=222.9
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhc
Q 003910 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (787)
Q Consensus 246 ~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~ 325 (787)
..|+|+|.++++.++.++++|++++||+|||++|++++... +..+||||||++|+.||++++.+|
T Consensus 92 ~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~-----------~~~~Lvl~P~~~L~~Q~~~~~~~~---- 156 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGIF---- 156 (472)
T ss_dssp CCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH-----------CSCEEEEESSHHHHHHHHHHGGGG----
T ss_pred CCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc-----------CCCEEEEECCHHHHHHHHHHHHhC----
Confidence 47999999999999999999999999999999999887653 456999999999999999999885
Q ss_pred Cce-EEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHhhhcCCCc
Q 003910 326 GIR-VSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDR 404 (787)
Q Consensus 326 ~i~-v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~ 404 (787)
++. +.+++|+... ..+|+|+||+.|...+.. ...++++|||||||++.+..|.. ++..+ +..
T Consensus 157 ~~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~---~~~~~~liIvDEaH~~~~~~~~~----~~~~~-~~~ 219 (472)
T 2fwr_A 157 GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESYVQ----IAQMS-IAP 219 (472)
T ss_dssp CGGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHH---HTTTCSEEEEETGGGTTSTTTHH----HHHTC-CCS
T ss_pred CCcceEEECCCcCC---------cCCEEEEEcHHHHHHHHH---hcCCCCEEEEECCcCCCChHHHH----HHHhc-CCC
Confidence 778 7777776543 479999999999876642 12468999999999999887753 33333 467
Q ss_pred eEEEEeccCcH-------------------HHHHHHHHHhCCCeEE--Eeccccc------------------------c
Q 003910 405 QTLLFSATMPR-------------------KVEKLAREILSDPVRV--TVGEVGM------------------------A 439 (787)
Q Consensus 405 q~ll~SAT~~~-------------------~v~~l~~~~l~~p~~i--~v~~~~~------------------------~ 439 (787)
++|++|||+.+ .+..+...++..+..+ .+..... .
T Consensus 220 ~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 299 (472)
T 2fwr_A 220 FRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRR 299 (472)
T ss_dssp EEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTC
T ss_pred eEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 89999999873 1222222222222111 1100000 0
Q ss_pred cccceEEEE--------------------ecCCCcchHHHHHHhcCCcCCCCCEEEEecccccHHHHHHHHHHcCCceee
Q 003910 440 NEDITQVVH--------------------VIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAA 499 (787)
Q Consensus 440 ~~~i~q~~~--------------------~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~ 499 (787)
...+.+.+. .......|...|.+++.. ....++||||+++..++.+++.|. +..
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~k~lvF~~~~~~~~~l~~~l~-----~~~ 373 (472)
T 2fwr_A 300 AEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILER-HRKDKIIIFTRHNELVYRISKVFL-----IPA 373 (472)
T ss_dssp CSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHH-TSSSCBCCBCSCHHHHHHHHHHTT-----CCB
T ss_pred hhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHh-CCCCcEEEEECCHHHHHHHHHHhC-----cce
Confidence 000000000 000123455666666655 346799999999999999999883 678
Q ss_pred ccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEEEecCCCCHHHHHHHhhccCCCCCC--CcEEEEEEcc
Q 003910 500 LHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDK--DGTAYTLVTQ 577 (787)
Q Consensus 500 lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G~~--~G~~i~l~~~ 577 (787)
+||+++..+|..+++.|++|+++|||||+++++|+|+|++++||+|++|+++..|+||+||+||.|+. ...+|.|++.
T Consensus 374 ~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~ 453 (472)
T 2fwr_A 374 ITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISR 453 (472)
T ss_dssp CCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEEC
T ss_pred eeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999943 4566667775
Q ss_pred c
Q 003910 578 K 578 (787)
Q Consensus 578 ~ 578 (787)
.
T Consensus 454 ~ 454 (472)
T 2fwr_A 454 G 454 (472)
T ss_dssp S
T ss_pred C
Confidence 4
No 46
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=8.1e-39 Score=361.70 Aligned_cols=286 Identities=18% Similarity=0.245 Sum_probs=199.8
Q ss_pred HHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCC
Q 003910 258 IILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMS 337 (787)
Q Consensus 258 ~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~ 337 (787)
++++++|+|++++||||||++|++|++..+.. .++++|||+||++||.|+++.++.+ .+.+..+..
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~-------~~~~~lil~Ptr~La~Q~~~~l~~~------~v~~~~~~~- 69 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR-------RRLRTLVLAPTRVVLSEMKEAFHGL------DVKFHTQAF- 69 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTTTS------CEEEESSCC-
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh-------cCCeEEEEcchHHHHHHHHHHHhcC------CeEEecccc-
Confidence 45789999999999999999999999998754 3578999999999999999887743 222211110
Q ss_pred hHHHHHHHhcCCcEEEeCHHHHHHHHHh--------ccccccceeEEEEechhhhhcCCChHHHHHHhhhc-CCCceEEE
Q 003910 338 KLDQFKELKAGCEIVIATPGRLIDMLKM--------KALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI-RPDRQTLL 408 (787)
Q Consensus 338 ~~~~~~~l~~~~dIIV~Tp~~L~~~l~~--------~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~-~~~~q~ll 408 (787)
-+|+||+++++++.. ....+.++++|||||||+| +.++...+..+...+ +..+|+++
T Consensus 70 -------------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~ 135 (440)
T 1yks_A 70 -------------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATIL 135 (440)
T ss_dssp -------------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEE
T ss_pred -------------eeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEE
Confidence 035666555433222 2234789999999999998 332322222222222 36799999
Q ss_pred EeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCC--CcchHHHHHHhcCCcCCCCCEEEEecccccHHHH
Q 003910 409 FSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPS--DAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEI 486 (787)
Q Consensus 409 ~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~--~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l 486 (787)
||||+++.+..++.. ..++ ......++. ....+..+.+ ..+++||||+++..++.+
T Consensus 136 ~SAT~~~~~~~~~~~--~~~~--------------~~~~~~~~~~~~~~~~~~l~~------~~~~~lVF~~s~~~a~~l 193 (440)
T 1yks_A 136 MTATPPGTSDEFPHS--NGEI--------------EDVQTDIPSEPWNTGHDWILA------DKRPTAWFLPSIRAANVM 193 (440)
T ss_dssp ECSSCTTCCCSSCCC--SSCE--------------EEEECCCCSSCCSSSCHHHHH------CCSCEEEECSCHHHHHHH
T ss_pred EeCCCCchhhhhhhc--CCCe--------------eEeeeccChHHHHHHHHHHHh------cCCCEEEEeCCHHHHHHH
Confidence 999998764322221 0111 111111111 1112233332 256999999999999999
Q ss_pred HHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEEE-------------------ecC
Q 003910 487 ESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN-------------------FDI 547 (787)
Q Consensus 487 ~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~-------------------~d~ 547 (787)
++.|...++.+..+|| .+|..+++.|++|+++|||||+++++|||+| +++||+ |+.
T Consensus 194 ~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~ 268 (440)
T 1yks_A 194 AASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPL 268 (440)
T ss_dssp HHHHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEE
T ss_pred HHHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeecccc
Confidence 9999999999999999 4688999999999999999999999999999 999986 999
Q ss_pred CCCHHHHHHHhhccCCCCCCCcEEEEEE---ccccHHHHHHHHHHHHHcCCCcc
Q 003910 548 ARDMDMHVHRIGRTGRAGDKDGTAYTLV---TQKEARFAGELVNSLIAAGQNVS 598 (787)
Q Consensus 548 p~s~~~y~QriGR~gR~G~~~G~~i~l~---~~~d~~~~~~l~~~l~~~~~~vp 598 (787)
|.++.+|+||+||+||.|.+.|.||+|+ ++.+...+..+...+......++
T Consensus 269 p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~l~ 322 (440)
T 1yks_A 269 RISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASMLLDNMEVR 322 (440)
T ss_dssp ECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHHHHTTSCCG
T ss_pred ccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHhcccccccc
Confidence 9999999999999999854689999996 67777777776666555555443
No 47
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=2.2e-37 Score=371.12 Aligned_cols=339 Identities=19% Similarity=0.250 Sum_probs=248.1
Q ss_pred CCccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC-CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCC
Q 003910 221 PRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSG-RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGP 299 (787)
Q Consensus 221 P~pi~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~g-rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p 299 (787)
+.++.+|.++++++.+.+.+...+ ..|+++|+++|+.++.+ ++++++++||+|||+ ++|++...... ....++
T Consensus 68 ~~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~---~~~~g~ 141 (773)
T 2xau_A 68 DGKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEM---PHLENT 141 (773)
T ss_dssp HSSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHC---GGGGTC
T ss_pred cCCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhcc---ccCCCc
Confidence 456788999999999999999887 78999999999887754 679999999999998 46666332111 112367
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEe
Q 003910 300 IGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLD 379 (787)
Q Consensus 300 ~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViD 379 (787)
.++|++|+++|+.|+++.+.... ++.+...+|+...... ......+|+|+||++|...+... ..+.++++||||
T Consensus 142 ~ilvl~P~r~La~q~~~~l~~~~---~~~v~~~vG~~i~~~~--~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIlD 215 (773)
T 2xau_A 142 QVACTQPRRVAAMSVAQRVAEEM---DVKLGEEVGYSIRFEN--KTSNKTILKYMTDGMLLREAMED-HDLSRYSCIILD 215 (773)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHT---TCCBTTTEEEEETTEE--ECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEEC
T ss_pred eEEecCchHHHHHHHHHHHHHHh---CCchhheecceecccc--ccCCCCCEEEECHHHHHHHHhhC-ccccCCCEEEec
Confidence 79999999999999987665543 3333222222111100 01135899999999999877654 458899999999
Q ss_pred chhh-hhcCCChHHHHHHhhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcchHH
Q 003910 380 EADR-MFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLP 458 (787)
Q Consensus 380 Eah~-m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~ 458 (787)
|+|. +++..+...+...+....++.|+|+||||++. +.+. .++.++..+.+.... ..+.+.+.... ...+..
T Consensus 216 Eah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~--~~l~-~~~~~~~vi~v~gr~---~pv~~~~~~~~-~~~~~~ 288 (773)
T 2xau_A 216 EAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDA--EKFQ-RYFNDAPLLAVPGRT---YPVELYYTPEF-QRDYLD 288 (773)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCC--HHHH-HHTTSCCEEECCCCC---CCEEEECCSSC-CSCHHH
T ss_pred CccccccchHHHHHHHHHHHHhCCCceEEEEeccccH--HHHH-HHhcCCCcccccCcc---cceEEEEecCC-chhHHH
Confidence 9995 66643322233333344578999999999964 3444 455544444443222 23443333222 222232
Q ss_pred HHHHhcCC---cCCCCCEEEEecccccHHHHHHHHHH-----------cCCceeeccCCCCHHHHHHHHHHhh-----cC
Q 003910 459 WLLEKLPG---MIDDGDVLVFASKKTTVDEIESQLAQ-----------KGFKAAALHGDKDQASRMEILQKFK-----SG 519 (787)
Q Consensus 459 ~L~~~L~~---~~~~~kvLVF~~s~~~a~~l~~~L~~-----------~g~~v~~lhg~~~~~eR~~~l~~F~-----~G 519 (787)
.++..+.. ....+++||||+++.+++.++..|.. .++.+..+||+|++.+|..+++.|+ +|
T Consensus 289 ~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g 368 (773)
T 2xau_A 289 SAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRP 368 (773)
T ss_dssp HHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSC
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCC
Confidence 22222211 12467999999999999999999985 5788999999999999999999999 99
Q ss_pred CccEEEEehhhhccCCCCCccEEEEecC------------------CCCHHHHHHHhhccCCCCCCCcEEEEEEccccH
Q 003910 520 VYHVLIATDVAARGLDIKSIKSVVNFDI------------------ARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (787)
Q Consensus 520 ~~~VLVaT~v~~rGlDip~v~~VI~~d~------------------p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~ 580 (787)
..+|||||+++++|||||+|++||++++ |.+..+|+||+|||||. +.|.||+|+++.+.
T Consensus 369 ~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~--~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 369 GRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT--RPGKCFRLYTEEAF 445 (773)
T ss_dssp CEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS--SSEEEEESSCHHHH
T ss_pred ceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC--CCCEEEEEecHHHh
Confidence 9999999999999999999999999777 88999999999999998 47999999987654
No 48
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-36 Score=365.09 Aligned_cols=381 Identities=17% Similarity=0.240 Sum_probs=256.6
Q ss_pred CCCccccCccccccccCCccccCCCHHHHHHHHHHcCcee---ccCCCCCccCCccccCCCHHHHHHHHHCCCCCCcHHH
Q 003910 176 DHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRV---SGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQ 252 (787)
Q Consensus 176 ~~~~~~~~~f~k~fy~~~~~i~~~s~~~~~~~~~~~~i~v---~g~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptp~Q 252 (787)
.|..+.|+ .+.|.....+..+..+.+..+........ .....+.....|..+...+... .-.+|+|+|
T Consensus 171 KW~~L~y~---~~tWe~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~~~Lr~yQ 241 (800)
T 3mwy_W 171 KWRRLNYD---EATWENATDIVKLAPEQVKHFQNRENSKILPQYSSNYTSQRPRFEKLSVQPPFI------KGGELRDFQ 241 (800)
T ss_dssp EETTSCST---TCBCCBHHHHTTTCHHHHHHHHHTTTCTTCSTTCCCCCSCCCCCCCCSSCCTTC------CSSCCCTHH
T ss_pred EecCCCcc---cccccchhhhhhhhHHHHHHHHHhhhcccCCcchhcccccCCcccccccCCCcc------CCCCcCHHH
Confidence 34444443 45666666677777888888876543211 1111222233344433322211 124799999
Q ss_pred HHHHHHHH----cCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCce
Q 003910 253 CQALPIIL----SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIR 328 (787)
Q Consensus 253 ~~ai~~il----~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~ 328 (787)
.+++.+++ .++++|++++||+|||++++..+...+... .....+||||| ..|+.||.+++.+|++ +++
T Consensus 242 ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~-----~~~~~~LIV~P-~sll~qW~~E~~~~~p--~~~ 313 (800)
T 3mwy_W 242 LTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFAR-----RQNGPHIIVVP-LSTMPAWLDTFEKWAP--DLN 313 (800)
T ss_dssp HHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHH-----SCCSCEEEECC-TTTHHHHHHHHHHHST--TCC
T ss_pred HHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhc-----CCCCCEEEEEC-chHHHHHHHHHHHHCC--Cce
Confidence 99999887 789999999999999998655544333221 12334799999 5788899999999986 677
Q ss_pred EEEEECCCChHHHHHHHh------------cCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHH
Q 003910 329 VSAVYGGMSKLDQFKELK------------AGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSI 396 (787)
Q Consensus 329 v~~~~gg~~~~~~~~~l~------------~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~i 396 (787)
+++++|+......+.... ..++|+|+||+.|..... .+....+.+|||||||++.+. ...+...
T Consensus 314 v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~--~l~~~~w~~vIvDEaH~lkn~--~s~~~~~ 389 (800)
T 3mwy_W 314 CICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRA--ELGSIKWQFMAVDEAHRLKNA--ESSLYES 389 (800)
T ss_dssp EEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHH--HHHTSEEEEEEETTGGGGCCS--SSHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHH--HHhcCCcceeehhhhhhhcCc--hhHHHHH
Confidence 777777665554444321 247899999999976433 233447899999999999764 3455666
Q ss_pred hhhcCCCceEEEEeccC-cH---HHHHHHHHHhCC-----------------------------CeEEEeccc--ccccc
Q 003910 397 VGQIRPDRQTLLFSATM-PR---KVEKLAREILSD-----------------------------PVRVTVGEV--GMANE 441 (787)
Q Consensus 397 l~~~~~~~q~ll~SAT~-~~---~v~~l~~~~l~~-----------------------------p~~i~v~~~--~~~~~ 441 (787)
+..++ ..+.+++|||+ .+ ++-.++..+... |..+..... ....+
T Consensus 390 l~~l~-~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP 468 (800)
T 3mwy_W 390 LNSFK-VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLP 468 (800)
T ss_dssp HTTSE-EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTSC
T ss_pred HHHhh-hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhccC
Confidence 66664 44568899997 22 222222222111 111100000 00000
Q ss_pred cceEEEEecC----------------------------------------------------------------------
Q 003910 442 DITQVVHVIP---------------------------------------------------------------------- 451 (787)
Q Consensus 442 ~i~q~~~~~~---------------------------------------------------------------------- 451 (787)
.....+..+.
T Consensus 469 ~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~ 548 (800)
T 3mwy_W 469 SKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVL 548 (800)
T ss_dssp CEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHH
T ss_pred CcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHHH
Confidence 0001111110
Q ss_pred ----CCcchHHHHHHhcCCcCC-CCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCc---cE
Q 003910 452 ----SDAEKLPWLLEKLPGMID-DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVY---HV 523 (787)
Q Consensus 452 ----~~~~k~~~L~~~L~~~~~-~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~---~V 523 (787)
....|+..|..+|..... ..++||||+....++.|..+|...++.+..|||.++..+|..+++.|+++.. .+
T Consensus 549 ~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~ 628 (800)
T 3mwy_W 549 RGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVF 628 (800)
T ss_dssp HHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCE
T ss_pred HHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEE
Confidence 013355555555554433 4599999999999999999999999999999999999999999999998654 59
Q ss_pred EEEehhhhccCCCCCccEEEEecCCCCHHHHHHHhhccCCCCCC-CcEEEEEEccc
Q 003910 524 LIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDK-DGTAYTLVTQK 578 (787)
Q Consensus 524 LVaT~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G~~-~G~~i~l~~~~ 578 (787)
||+|.+++.|||++.+++||+||+|||+..++||+||++|.|++ ...+|.|++..
T Consensus 629 LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~ 684 (800)
T 3mwy_W 629 LLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKD 684 (800)
T ss_dssp EEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETT
T ss_pred EEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCC
Confidence 99999999999999999999999999999999999999999954 45667777765
No 49
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=3.4e-36 Score=315.11 Aligned_cols=236 Identities=42% Similarity=0.721 Sum_probs=203.0
Q ss_pred cCceeccCCCCC--ccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHh
Q 003910 211 LAIRVSGFDVPR--PVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (787)
Q Consensus 211 ~~i~v~g~~~P~--pi~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~ 288 (787)
+.+.+.+...|. ++.+|++++|++.+++.|.+.||..|+|+|.++++.++.++|++++++||+|||++|++|++.++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~ 86 (253)
T 1wrb_A 7 IPVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLV 86 (253)
T ss_dssp CCCCEECCSSSCCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CceeeeCCCCCCCCccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHH
Confidence 456677888887 999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCccc----ccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHH
Q 003910 289 DQPEL----QKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLK 364 (787)
Q Consensus 289 ~~~~~----~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~ 364 (787)
..... ....++++|||+||++|+.||++.+++++...++.+.+++||.....+...+..+++|+|+||++|.+++.
T Consensus 87 ~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~ 166 (253)
T 1wrb_A 87 CQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIE 166 (253)
T ss_dssp TTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHH
T ss_pred hhccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHH
Confidence 54311 12345789999999999999999999999888899999999999888888888889999999999999998
Q ss_pred hccccccceeEEEEechhhhhcCCChHHHHHHhhhc--CC--CceEEEEeccCcHHHHHHHHHHhCCCeEEEeccccccc
Q 003910 365 MKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI--RP--DRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMAN 440 (787)
Q Consensus 365 ~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~--~~--~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~ 440 (787)
...+.+..+++|||||||+|++++|...+..++..+ +. .+|+++||||+++.+..+++.++.+|+.+.++......
T Consensus 167 ~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~ 246 (253)
T 1wrb_A 167 KNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTS 246 (253)
T ss_dssp TTSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC------
T ss_pred cCCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCCCCc
Confidence 888889999999999999999999999999999854 33 68999999999999999999999999999988777666
Q ss_pred ccceEE
Q 003910 441 EDITQV 446 (787)
Q Consensus 441 ~~i~q~ 446 (787)
.+|.|.
T Consensus 247 ~~i~q~ 252 (253)
T 1wrb_A 247 DSIKQE 252 (253)
T ss_dssp ------
T ss_pred CCceec
Confidence 666664
No 50
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=7.9e-38 Score=363.35 Aligned_cols=279 Identities=23% Similarity=0.259 Sum_probs=213.8
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcC
Q 003910 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (787)
Q Consensus 247 ~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~ 326 (787)
.++++|.++++.+..++++|++|+||||||++|++|++. .+.++||++|||+||.|+++.+.+.. +
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~-----------~g~~vLVl~PTReLA~Qia~~l~~~~---g 282 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA-----------QGYKVLVLNPSVAATLGFGAYMSKAH---G 282 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH-----------TTCCEEEEESCHHHHHHHHHHHHHHH---S
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH-----------CCCeEEEEcchHHHHHHHHHHHHHHh---C
Confidence 345566666677778899999999999999999988875 24579999999999999988766554 6
Q ss_pred ceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHhhhcCCCce-
Q 003910 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ- 405 (787)
Q Consensus 327 i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q- 405 (787)
..+...+|+.. +..+++|+|+||++| +....+.+.++++||||||| +++.+|...+..++..++..+|
T Consensus 283 ~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l~~~~~~ 351 (666)
T 3o8b_A 283 IDPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECH-STDSTTILGIGTVLDQAETAGAR 351 (666)
T ss_dssp CCCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTT-CCSHHHHHHHHHHHHHTTTTTCS
T ss_pred CCeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccch-hcCccHHHHHHHHHHhhhhcCCc
Confidence 67777788754 245689999999998 35566778899999999996 5667788888889988887776
Q ss_pred -EEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcchHHHHHHhcCCcCCCCCEEEEecccccHH
Q 003910 406 -TLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVD 484 (787)
Q Consensus 406 -~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~ 484 (787)
+++||||++..+. ...+....+... ... .+.... .+.. + .....+++||||++++.++
T Consensus 352 llil~SAT~~~~i~------~~~p~i~~v~~~---~~~---~i~~~~---~~~~-----l-~~~~~~~vLVFv~Tr~~ae 410 (666)
T 3o8b_A 352 LVVLATATPPGSVT------VPHPNIEEVALS---NTG---EIPFYG---KAIP-----I-EAIRGGRHLIFCHSKKKCD 410 (666)
T ss_dssp EEEEEESSCTTCCC------CCCTTEEEEECB---SCS---SEEETT---EEEC-----G-GGSSSSEEEEECSCHHHHH
T ss_pred eEEEECCCCCcccc------cCCcceEEEeec---ccc---hhHHHH---hhhh-----h-hhccCCcEEEEeCCHHHHH
Confidence 6778999987321 111211111000 000 001110 0000 1 1224679999999999999
Q ss_pred HHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEE----------Eec--------
Q 003910 485 EIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVV----------NFD-------- 546 (787)
Q Consensus 485 ~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI----------~~d-------- 546 (787)
.+++.|...++.+..+||++++.+ |.++..+|||||+++++||||+ +++|| |||
T Consensus 411 ~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~ 482 (666)
T 3o8b_A 411 ELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIE 482 (666)
T ss_dssp HHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEE
T ss_pred HHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccc
Confidence 999999999999999999999864 5566679999999999999997 99988 787
Q ss_pred ---CCCCHHHHHHHhhccCCCCCCCcEEEEEEccccHHH
Q 003910 547 ---IARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARF 582 (787)
Q Consensus 547 ---~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~ 582 (787)
.|.+..+|+||+||+|| | +.|. |+|+++.+...
T Consensus 483 ~~~~P~s~~syiQRiGRtGR-g-~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 483 TTTVPQDAVSRSQRRGRTGR-G-RRGI-YRFVTPGERPS 518 (666)
T ss_dssp EEEEECBHHHHHHHHTTBCS-S-SCEE-EEESCCCCBCS
T ss_pred cccCcCCHHHHHHHhccCCC-C-CCCE-EEEEecchhhc
Confidence 89999999999999999 7 6799 99999876544
No 51
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=1.6e-37 Score=365.75 Aligned_cols=306 Identities=19% Similarity=0.238 Sum_probs=215.3
Q ss_pred HHHCCCC-----CCcHHHH-----HHHHHHH------cCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEE
Q 003910 240 ISKQGYE-----KPTSIQC-----QALPIIL------SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI 303 (787)
Q Consensus 240 l~~~g~~-----~ptp~Q~-----~ai~~il------~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLI 303 (787)
|...||. .|||+|. ++||.++ .++|+|++++||||||++|++|++..+.. .++++||
T Consensus 203 l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~-------~~~~~li 275 (673)
T 2wv9_A 203 LYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ-------KRLRTAV 275 (673)
T ss_dssp EEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH-------TTCCEEE
T ss_pred eeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh-------CCCcEEE
Confidence 3344555 8999999 9999988 89999999999999999999999988754 3578999
Q ss_pred EcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhh
Q 003910 304 CAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR 383 (787)
Q Consensus 304 l~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~ 383 (787)
|+||++||.|+++.++.+ ++. ...+.... ....+.-+-+.+.+.+...+... ..+.++++|||||||+
T Consensus 276 laPTr~La~Q~~~~l~~~----~i~--~~~~~l~~-----v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH~ 343 (673)
T 2wv9_A 276 LAPTRVVAAEMAEALRGL----PVR--YLTPAVQR-----EHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAHF 343 (673)
T ss_dssp EESSHHHHHHHHHHTTTS----CCE--ECCC---C-----CCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTTC
T ss_pred EccHHHHHHHHHHHHhcC----Cee--eecccccc-----cCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCCcc
Confidence 999999999999887754 222 11110000 00011234455556555544332 4688999999999999
Q ss_pred hhcCCChHHHHHHhhhc-CCCceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcchHHHHHH
Q 003910 384 MFDLGFEPQIRSIVGQI-RPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLE 462 (787)
Q Consensus 384 m~~~~f~~~i~~il~~~-~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L~~ 462 (787)
+ +..+...+..+...+ +..+|+|+||||+++.+..+... ..|+ ......++. .+...++.
T Consensus 344 ~-~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~--~~~i--------------~~v~~~~~~--~~~~~~l~ 404 (673)
T 2wv9_A 344 T-DPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT--NSPV--------------HDVSSEIPD--RAWSSGFE 404 (673)
T ss_dssp C-CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC--SSCE--------------EEEECCCCS--SCCSSCCH
T ss_pred c-CccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc--CCce--------------EEEeeecCH--HHHHHHHH
Confidence 7 221222333333333 36789999999998664322111 0111 111111111 11111112
Q ss_pred hcCCcCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEE
Q 003910 463 KLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSV 542 (787)
Q Consensus 463 ~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~V 542 (787)
.+.+ ..+++||||+++..++.++..|...++.+..+||. +|..+++.|++|+++|||||+++++|||+| +++|
T Consensus 405 ~l~~--~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~V 477 (673)
T 2wv9_A 405 WITD--YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRV 477 (673)
T ss_dssp HHHS--CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEE
T ss_pred HHHh--CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEE
Confidence 2222 36799999999999999999999999999999993 789999999999999999999999999999 9999
Q ss_pred EE--------------------ecCCCCHHHHHHHhhccCCCCCCCcEEEEEE---ccccHHHHHHHHHHH
Q 003910 543 VN--------------------FDIARDMDMHVHRIGRTGRAGDKDGTAYTLV---TQKEARFAGELVNSL 590 (787)
Q Consensus 543 I~--------------------~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~---~~~d~~~~~~l~~~l 590 (787)
|+ ||+|.++.+|+||+||+||.+.+.|.||+|+ ++.+..++..+...+
T Consensus 478 I~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~ 548 (673)
T 2wv9_A 478 IDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKI 548 (673)
T ss_dssp EECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred EECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHH
Confidence 98 6799999999999999999943789999996 566766655554433
No 52
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.9e-35 Score=304.46 Aligned_cols=217 Identities=42% Similarity=0.703 Sum_probs=190.5
Q ss_pred ccCCCCCccCCccc-cCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCccc-
Q 003910 216 SGFDVPRPVKTFED-CGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPEL- 293 (787)
Q Consensus 216 ~g~~~P~pi~sf~~-~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~- 293 (787)
....+|+|+.+|.+ +++++.+++.|.+.||.+|+|+|.++++.+++++|+++++|||+|||++|++|++.++......
T Consensus 10 ~~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~ 89 (228)
T 3iuy_A 10 EKRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISR 89 (228)
T ss_dssp SCCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC------
T ss_pred ccCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchh
Confidence 34568999999999 7999999999999999999999999999999999999999999999999999999988653211
Q ss_pred ccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccce
Q 003910 294 QKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRV 373 (787)
Q Consensus 294 ~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i 373 (787)
....++++|||+||++|+.|+++.++++. ..++++.+++||.....+...+..+++|+|+||++|.+++......+.++
T Consensus 90 ~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 90 EQRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp ---CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred hccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 12357889999999999999999999986 34789999999998888888888899999999999999998888889999
Q ss_pred eEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEEe
Q 003910 374 TYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTV 433 (787)
Q Consensus 374 ~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v 433 (787)
++|||||||+|.+++|...+..++..+++++|+++||||+|+.++.+++.++.+|+.+.+
T Consensus 169 ~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~v 228 (228)
T 3iuy_A 169 TYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVYV 228 (228)
T ss_dssp CEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEC
T ss_pred eEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEeC
Confidence 999999999999999999999999999999999999999999999999999999988764
No 53
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=1.2e-36 Score=345.91 Aligned_cols=272 Identities=19% Similarity=0.256 Sum_probs=200.0
Q ss_pred HHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECC
Q 003910 256 LPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGG 335 (787)
Q Consensus 256 i~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg 335 (787)
..++..++++|++++||||||++|++|++.+++. .++++|||+|||+||.|+++.+. ++.+....+.
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~-------~~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~~~~ 81 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ-------QRLRTAVLAPTRVVAAEMAEALR------GLPVRYQTSA 81 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH-------TTCCEEEEECSHHHHHHHHHHTT------TSCEEECC--
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh-------CCCcEEEECchHHHHHHHHHHhc------CceEeEEecc
Confidence 4456678999999999999999999999998754 35789999999999999988876 3333222211
Q ss_pred CChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhh-----hhcCCChHHHHHHhhhcCCCceEEEEe
Q 003910 336 MSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR-----MFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (787)
Q Consensus 336 ~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~-----m~~~~f~~~i~~il~~~~~~~q~ll~S 410 (787)
... .-..+.-|.++|.+.|...+... ..+.++++|||||||+ ++.++|...+. ..+.+|+|+||
T Consensus 82 ~~~-----~~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~-----~~~~~~~il~S 150 (459)
T 2z83_A 82 VQR-----EHQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIATKV-----ELGEAAAIFMT 150 (459)
T ss_dssp -----------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHHHHH-----HTTSCEEEEEC
T ss_pred ccc-----CCCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHHHHh-----ccCCccEEEEE
Confidence 111 01234567889999887766543 4588999999999998 44444332221 23688999999
Q ss_pred ccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCC--CcchHHHHHHhcCCcCCCCCEEEEecccccHHHHHH
Q 003910 411 ATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPS--DAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIES 488 (787)
Q Consensus 411 AT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~--~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~ 488 (787)
||++..+..+... ..|+..... .++. .......+.+ ..+++||||+++..++.+++
T Consensus 151 AT~~~~~~~~~~~--~~pi~~~~~--------------~~~~~~~~~~~~~l~~------~~~~~LVF~~s~~~~~~l~~ 208 (459)
T 2z83_A 151 ATPPGTTDPFPDS--NAPIHDLQD--------------EIPDRAWSSGYEWITE------YAGKTVWFVASVKMGNEIAM 208 (459)
T ss_dssp SSCTTCCCSSCCC--SSCEEEEEC--------------CCCSSCCSSCCHHHHH------CCSCEEEECSCHHHHHHHHH
T ss_pred cCCCcchhhhccC--CCCeEEecc--------------cCCcchhHHHHHHHHh------cCCCEEEEeCChHHHHHHHH
Confidence 9998664322211 223222110 1111 1112222222 25799999999999999999
Q ss_pred HHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEEE--------------------ecCC
Q 003910 489 QLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVN--------------------FDIA 548 (787)
Q Consensus 489 ~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~--------------------~d~p 548 (787)
.|...++.+..+|+. +|..+++.|++|+.+|||||+++++|||||+ ++||+ |+.|
T Consensus 209 ~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p 283 (459)
T 2z83_A 209 CLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSP 283 (459)
T ss_dssp HHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEE
T ss_pred HHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCC
Confidence 999999999999995 6788999999999999999999999999999 99999 7799
Q ss_pred CCHHHHHHHhhccCCCCCCCcEEEEEEccc
Q 003910 549 RDMDMHVHRIGRTGRAGDKDGTAYTLVTQK 578 (787)
Q Consensus 549 ~s~~~y~QriGR~gR~G~~~G~~i~l~~~~ 578 (787)
.++.+|+||+||+||.|.+.|.||+|++..
T Consensus 284 ~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 284 ITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp CCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred CCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 999999999999999995489999999885
No 54
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=2.1e-34 Score=301.03 Aligned_cols=209 Identities=43% Similarity=0.713 Sum_probs=193.6
Q ss_pred CCccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCE
Q 003910 221 PRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPI 300 (787)
Q Consensus 221 P~pi~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~ 300 (787)
+.++.+|+++++++.+++.|.+.||..|+|+|.++++.+++++++|++++||+|||++|++|++..+... ..+++
T Consensus 39 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~-----~~~~~ 113 (249)
T 3ber_A 39 EEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET-----PQRLF 113 (249)
T ss_dssp HHHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-----CCSSC
T ss_pred ccccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcC-----CCCce
Confidence 3457889999999999999999999999999999999999999999999999999999999999988654 24678
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHh-ccccccceeEEEEe
Q 003910 301 GVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM-KALTMSRVTYLVLD 379 (787)
Q Consensus 301 vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~-~~~~l~~i~~lViD 379 (787)
+|||+||++|+.|+++.+++++...++++.+++||.....+...+..+++|+|+||++|.+.+.. ..+.+..+++||||
T Consensus 114 ~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViD 193 (249)
T 3ber_A 114 ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMD 193 (249)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEEC
T ss_pred EEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEc
Confidence 99999999999999999999998889999999999998888888888999999999999998876 45678899999999
Q ss_pred chhhhhcCCChHHHHHHhhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEEec
Q 003910 380 EADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVG 434 (787)
Q Consensus 380 Eah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~ 434 (787)
|||+|.+++|...+..++..+++.+|+++||||+++.++++++.++.+|+.+.++
T Consensus 194 Eah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v~ 248 (249)
T 3ber_A 194 EADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS 248 (249)
T ss_dssp SHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEECC
T ss_pred ChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEec
Confidence 9999999999999999999999999999999999999999999999999988653
No 55
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=4.4e-35 Score=330.34 Aligned_cols=270 Identities=21% Similarity=0.225 Sum_probs=195.0
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHH
Q 003910 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~ 340 (787)
.++++|++++||||||++|++|++.++.. .++++|||+||++||.|+++.+. ++.+.+..++...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~-------~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~-- 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK-------KRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS-- 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTT------TSCEEEC--------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh-------CCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc--
Confidence 36899999999999999999999977643 35789999999999999987765 4555544443221
Q ss_pred HHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHhhhc-CCCceEEEEeccCcHHHHH
Q 003910 341 QFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI-RPDRQTLLFSATMPRKVEK 419 (787)
Q Consensus 341 ~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~-~~~~q~ll~SAT~~~~v~~ 419 (787)
.-..+.-+.++|.+.+...+.. ...+.++++|||||||++ ...+..+...+.... ++.+|+|+||||+++.+..
T Consensus 66 ---~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~ 140 (431)
T 2v6i_A 66 ---ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEA 140 (431)
T ss_dssp ------CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCS
T ss_pred ---cCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhh
Confidence 1112456778899988776655 556889999999999996 333333333333332 5689999999999864321
Q ss_pred HHHHHhCCCeEEEecccccccccceEEEEecCCCcchHHHHHHhcCCcCCCCCEEEEecccccHHHHHHHHHHcCCceee
Q 003910 420 LAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAA 499 (787)
Q Consensus 420 l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~ 499 (787)
+.. ....+......++. .+...++..+.+ ..+++||||+++..++.+++.|...++.+..
T Consensus 141 ~~~----------------~~~~i~~~~~~~~~--~~~~~~~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~ 200 (431)
T 2v6i_A 141 FPP----------------SNSPIIDEETRIPD--KAWNSGYEWITE--FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLY 200 (431)
T ss_dssp SCC----------------CSSCCEEEECCCCS--SCCSSCCHHHHS--CSSCEEEECSSHHHHHHHHHHHHHTTCCEEE
T ss_pred hcC----------------CCCceeeccccCCH--HHHHHHHHHHHc--CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEE
Confidence 110 01111111011111 111222222332 2568999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccE-----------------EEEecCCCCHHHHHHHhhccC
Q 003910 500 LHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKS-----------------VVNFDIARDMDMHVHRIGRTG 562 (787)
Q Consensus 500 lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~-----------------VI~~d~p~s~~~y~QriGR~g 562 (787)
+||. +|..+++.|++|+++|||||+++++|||+| +.+ ||+++.|.+..+|+||+||+|
T Consensus 201 lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~G 275 (431)
T 2v6i_A 201 LNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIG 275 (431)
T ss_dssp ESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSS
T ss_pred eCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccC
Confidence 9997 578899999999999999999999999999 544 678999999999999999999
Q ss_pred CCCCCCcEEEEEE
Q 003910 563 RAGDKDGTAYTLV 575 (787)
Q Consensus 563 R~G~~~G~~i~l~ 575 (787)
|.|.+.+.++++.
T Consensus 276 R~g~~~~~~~~~~ 288 (431)
T 2v6i_A 276 RNPEKLGDIYAYS 288 (431)
T ss_dssp CCTTCCCCEEEEC
T ss_pred CCCCCCCeEEEEc
Confidence 9985556666665
No 56
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=1.2e-34 Score=300.53 Aligned_cols=214 Identities=33% Similarity=0.532 Sum_probs=181.4
Q ss_pred ccCCCCCccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCccccc
Q 003910 216 SGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQK 295 (787)
Q Consensus 216 ~g~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~ 295 (787)
...+.|.++.+|++++|++.+++.|.+.||..|+|+|.++|+.+++++++|++++||+|||++|++|++..+...
T Consensus 21 ~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~----- 95 (237)
T 3bor_A 21 IESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE----- 95 (237)
T ss_dssp ------CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT-----
T ss_pred ccCCCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-----
Confidence 445578889999999999999999999999999999999999999999999999999999999999999887432
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhcC-CcEEEeCHHHHHHHHHhcccccccee
Q 003910 296 EEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAG-CEIVIATPGRLIDMLKMKALTMSRVT 374 (787)
Q Consensus 296 ~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~-~dIIV~Tp~~L~~~l~~~~~~l~~i~ 374 (787)
..++++|||+||++|+.|+++.+++++...++.+..++|+.....+...+..+ ++|+|+||++|.+++....+.+..++
T Consensus 96 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~ 175 (237)
T 3bor_A 96 FKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIK 175 (237)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCC
T ss_pred CCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCc
Confidence 24678999999999999999999999888889999999998877777777666 89999999999999988778889999
Q ss_pred EEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEEec
Q 003910 375 YLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVG 434 (787)
Q Consensus 375 ~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~ 434 (787)
+|||||||+|.+++|...+..++..+++.+|+++||||+++.+.++++.++.+|+.+.+.
T Consensus 176 ~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 176 MFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp EEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred EEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 999999999999999999999999999999999999999999999999999999888654
No 57
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=1e-34 Score=302.33 Aligned_cols=230 Identities=33% Similarity=0.574 Sum_probs=199.6
Q ss_pred HHHHHHHHcCceeccCCCCCccCCcccc----CCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHH
Q 003910 203 DVMEYKKSLAIRVSGFDVPRPVKTFEDC----GFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 203 ~~~~~~~~~~i~v~g~~~P~pi~sf~~~----~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla 278 (787)
++..++++..+.+.+..+|.|+.+|+++ ++++.+++.|.+.||..|+|+|.++++.++++++++++++||+|||++
T Consensus 3 ~~~~~~~~~~i~~~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 3 KINFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLA 82 (245)
T ss_dssp HHHHHHHHTTEEEESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHH
T ss_pred hHHHHHHhCceEecCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHH
Confidence 4678899999999999999999999987 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHH-HHhcCCcEEEeCHH
Q 003910 279 FVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK-ELKAGCEIVIATPG 357 (787)
Q Consensus 279 ~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~-~l~~~~dIIV~Tp~ 357 (787)
|++|++.++... ...++++|||+||++|+.|+++.+++++...++++.+++++........ ....+++|+|+||+
T Consensus 83 ~~l~~l~~l~~~----~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~ 158 (245)
T 3dkp_A 83 FSIPILMQLKQP----ANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPN 158 (245)
T ss_dssp HHHHHHHHHCSC----CSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHH
T ss_pred HHHHHHHHHhhc----ccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHH
Confidence 999999988542 2346789999999999999999999999888888888776643332211 12346899999999
Q ss_pred HHHHHHHhc--cccccceeEEEEechhhhhc---CCChHHHHHHhhhc-CCCceEEEEeccCcHHHHHHHHHHhCCCeEE
Q 003910 358 RLIDMLKMK--ALTMSRVTYLVLDEADRMFD---LGFEPQIRSIVGQI-RPDRQTLLFSATMPRKVEKLAREILSDPVRV 431 (787)
Q Consensus 358 ~L~~~l~~~--~~~l~~i~~lViDEah~m~~---~~f~~~i~~il~~~-~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i 431 (787)
+|.+++... .+.+.++.+|||||||+|.+ .+|...+..++..+ .+..|+++||||+|+.+..+++.++.+|+.+
T Consensus 159 ~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i 238 (245)
T 3dkp_A 159 RLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISV 238 (245)
T ss_dssp HHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEE
T ss_pred HHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEE
Confidence 999999775 46788999999999999998 56888888888766 4578999999999999999999999999999
Q ss_pred Eeccc
Q 003910 432 TVGEV 436 (787)
Q Consensus 432 ~v~~~ 436 (787)
.++..
T Consensus 239 ~~~~~ 243 (245)
T 3dkp_A 239 SIGAR 243 (245)
T ss_dssp EECC-
T ss_pred EeCCC
Confidence 88653
No 58
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=6.4e-34 Score=294.59 Aligned_cols=227 Identities=31% Similarity=0.504 Sum_probs=197.4
Q ss_pred HHHHHHHHHHcCceeccCCCCCccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHH
Q 003910 201 EQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFV 280 (787)
Q Consensus 201 ~~~~~~~~~~~~i~v~g~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~l 280 (787)
.+++..+++.+.. ..++++.+|+++++++.+++.|.+.+|..|+|+|.++++.+++++++|++++||+|||++|+
T Consensus 6 ~~~~~~~~~~~~~-----~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 6 RESISRLMQNYEK-----INVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp HHHHHHHHHTTTT-----CCGGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred HhHHHHHHhcccc-----CCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHH
Confidence 4556666665432 22567889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHH
Q 003910 281 LPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLI 360 (787)
Q Consensus 281 lp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~ 360 (787)
+|++.++..... ....++++|||+||++|+.|+++.++++....++.+.+++|+.....+...+ .+++|+|+||++|.
T Consensus 81 ~~~l~~l~~~~~-~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~ 158 (236)
T 2pl3_A 81 VPVLEALYRLQW-TSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLL 158 (236)
T ss_dssp HHHHHHHHHTTC-CGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHH
T ss_pred HHHHHHHHhhcc-cccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHH
Confidence 999998875422 1234678999999999999999999999887789999999998877665555 57999999999999
Q ss_pred HHHHhc-cccccceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEEec
Q 003910 361 DMLKMK-ALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVG 434 (787)
Q Consensus 361 ~~l~~~-~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~ 434 (787)
+.+... .+.+.++++|||||||+|.+++|...+..++..+++.+|+++||||+++.+..+++.++.+|..+.+.
T Consensus 159 ~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 159 QHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp HHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred HHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 988764 46678999999999999999999999999999999999999999999999999999999999988764
No 59
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=3.8e-34 Score=295.29 Aligned_cols=212 Identities=27% Similarity=0.446 Sum_probs=185.3
Q ss_pred ccCCCCCccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCccccc
Q 003910 216 SGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQK 295 (787)
Q Consensus 216 ~g~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~ 295 (787)
.+...|.+..+|+++++++.+++.|.+.||..|+|+|.++++.+++++|+|++++||+|||++|++|++..+...
T Consensus 15 ~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~----- 89 (230)
T 2oxc_A 15 TGDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE----- 89 (230)
T ss_dssp ---------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT-----
T ss_pred cCCCCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-----
Confidence 455678888999999999999999999999999999999999999999999999999999999999999887543
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHHHhhhc-CceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhcccccccee
Q 003910 296 EEGPIGVICAPTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVT 374 (787)
Q Consensus 296 ~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~-~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~ 374 (787)
..++++|||+||++|+.|+++.++++.... ++++.+++||.....+...+ .+++|+|+||++|.+++....+.+.+++
T Consensus 90 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~ 168 (230)
T 2oxc_A 90 NLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGSIR 168 (230)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGGGCC
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCcccccCC
Confidence 346789999999999999999999998654 78999999988876655444 4799999999999999988778889999
Q ss_pred EEEEechhhhhcCC-ChHHHHHHhhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEEe
Q 003910 375 YLVLDEADRMFDLG-FEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTV 433 (787)
Q Consensus 375 ~lViDEah~m~~~~-f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v 433 (787)
+|||||||++.+++ |...+..++..++..+|+++||||+++.+..++..++.+|..+.+
T Consensus 169 ~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 169 LFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp EEEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred EEEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 99999999999997 999999999999989999999999999999999999999987754
No 60
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=2.9e-34 Score=308.12 Aligned_cols=214 Identities=31% Similarity=0.451 Sum_probs=187.8
Q ss_pred ceeccCCCCC---ccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC--CCEEEEccCCCchhHHHHHHHHHHH
Q 003910 213 IRVSGFDVPR---PVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHI 287 (787)
Q Consensus 213 i~v~g~~~P~---pi~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~g--rdvii~a~TGsGKTla~llp~l~~l 287 (787)
+.+.+.+.+. ++.+|++++|++.+++.|...||..|||+|.++||.++.+ +|+|++++||||||++|++|++.++
T Consensus 77 v~v~~~~~~~p~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l 156 (300)
T 3fmo_B 77 VEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQV 156 (300)
T ss_dssp EEEECSSTTCCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceeccCCCCCCcCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhh
Confidence 3344444444 4688999999999999999999999999999999999998 9999999999999999999999987
Q ss_pred hcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhc-CceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHh-
Q 003910 288 MDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKM- 365 (787)
Q Consensus 288 ~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~-~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~- 365 (787)
... ..+|++|||+|||+||.|+++.++++.... ++.+.+++|+....... ..+++|||+||++|++++.+
T Consensus 157 ~~~-----~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~ 228 (300)
T 3fmo_B 157 EPA-----NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKL 228 (300)
T ss_dssp CTT-----SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTT
T ss_pred hcc-----CCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhc
Confidence 543 346789999999999999999999998754 68888888887654332 34689999999999999965
Q ss_pred ccccccceeEEEEechhhhhc-CCChHHHHHHhhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEEec
Q 003910 366 KALTMSRVTYLVLDEADRMFD-LGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVG 434 (787)
Q Consensus 366 ~~~~l~~i~~lViDEah~m~~-~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~ 434 (787)
..+.+.++.+|||||||+|++ .+|...+..++..+++.+|+++||||+++.+..+++.++.+|+.|.+.
T Consensus 229 ~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 229 KFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp CCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred CCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 566789999999999999998 789999999999999999999999999999999999999999988764
No 61
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=4e-35 Score=344.35 Aligned_cols=304 Identities=17% Similarity=0.181 Sum_probs=190.8
Q ss_pred CCCcHHHHHHHHHHHc----C-CCEEEEccCCCchhHHHHHHHHHHHhcCc--ccccCCCCEEEEEcCcHHHHHHHH-HH
Q 003910 246 EKPTSIQCQALPIILS----G-RDIIGIAKTGSGKTAAFVLPMIVHIMDQP--ELQKEEGPIGVICAPTRELAHQIY-LE 317 (787)
Q Consensus 246 ~~ptp~Q~~ai~~il~----g-rdvii~a~TGsGKTla~llp~l~~l~~~~--~~~~~~~p~vLIl~PtreLa~Qi~-~~ 317 (787)
..|+|+|.++++.++. + +++|++++||+|||++++. ++..++... ......++++|||+||++|+.||. +.
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~-~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~ 255 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQ-ISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKT 255 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHHHHTTCCSSCSSSCCCEEEEEC-----------C
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHH-HHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 3699999999999886 4 6699999999999999554 445444321 001124678999999999999998 77
Q ss_pred HHHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHH----hccccccceeEEEEechhhhhcCCChHHH
Q 003910 318 TKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLK----MKALTMSRVTYLVLDEADRMFDLGFEPQI 393 (787)
Q Consensus 318 ~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~----~~~~~l~~i~~lViDEah~m~~~~f~~~i 393 (787)
++.+ +..+..+.++. +..+.+|+|+||++|...+. ...+....+++|||||||++.... ...+
T Consensus 256 ~~~~----~~~~~~~~~~~--------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~ 322 (590)
T 3h1t_A 256 FTPF----GDARHKIEGGK--------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNW 322 (590)
T ss_dssp CTTT----CSSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------C
T ss_pred HHhc----chhhhhhhccC--------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHH
Confidence 7766 33444443322 23458999999999988764 234456779999999999987643 2455
Q ss_pred HHHhhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEEeccc----c-cccccceEEEE--------------------
Q 003910 394 RSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEV----G-MANEDITQVVH-------------------- 448 (787)
Q Consensus 394 ~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~----~-~~~~~i~q~~~-------------------- 448 (787)
..++..++ ..++|+||||+..........++..++....-.. . .....+.....
T Consensus 323 ~~il~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (590)
T 3h1t_A 323 REILEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGRE 401 (590)
T ss_dssp HHHHHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC----------------
T ss_pred HHHHHhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccc
Confidence 66666664 4789999999875433333444444332211000 0 00000000000
Q ss_pred -----ecCCC-------cchHHH----HHHhcCCcCCCCCEEEEecccccHHHHHHHHHHcCCc--------eeeccCCC
Q 003910 449 -----VIPSD-------AEKLPW----LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFK--------AAALHGDK 504 (787)
Q Consensus 449 -----~~~~~-------~~k~~~----L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~--------v~~lhg~~ 504 (787)
+.... ..+... |.+.+......+++||||+++.+|+.+++.|...+.. +..+||.+
T Consensus 402 ~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~ 481 (590)
T 3h1t_A 402 IPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEE 481 (590)
T ss_dssp -------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTT
T ss_pred cccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCC
Confidence 00000 001112 2222333234579999999999999999999876432 77899998
Q ss_pred CHHHHHHHHHHhhcCCcc---EEEEehhhhccCCCCCccEEEEecCCCCHHHHHHHhhccCCCC
Q 003910 505 DQASRMEILQKFKSGVYH---VLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAG 565 (787)
Q Consensus 505 ~~~eR~~~l~~F~~G~~~---VLVaT~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G 565 (787)
++ +|..+++.|++|+.+ |||||+++++|+|+|.+++||++++|+++..|+||+||++|.+
T Consensus 482 ~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~ 544 (590)
T 3h1t_A 482 GK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLR 544 (590)
T ss_dssp HH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCB
T ss_pred hH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccC
Confidence 64 799999999998765 8889999999999999999999999999999999999999987
No 62
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=2.5e-34 Score=294.24 Aligned_cols=208 Identities=37% Similarity=0.574 Sum_probs=187.3
Q ss_pred ccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEE
Q 003910 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV 302 (787)
Q Consensus 223 pi~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vL 302 (787)
|..+|+++++++.+++.|.+.||.+|+|+|.++++.++++++++++++||+|||++|++|++..+... ..++++|
T Consensus 2 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~-----~~~~~~l 76 (219)
T 1q0u_A 2 AETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE-----RAEVQAV 76 (219)
T ss_dssp --CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT-----SCSCCEE
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhC-----cCCceEE
Confidence 45689999999999999999999999999999999999999999999999999999999999887542 3467899
Q ss_pred EEcCcHHHHHHHHHHHHHHhhhc----CceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEE
Q 003910 303 ICAPTRELAHQIYLETKKFAKSH----GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVL 378 (787)
Q Consensus 303 Il~PtreLa~Qi~~~~~~~~~~~----~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lVi 378 (787)
||+||++|+.|+++.++++.... ++.+.+++|+.....+...+..+++|+|+||++|.+++....+.+..+++|||
T Consensus 77 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lVi 156 (219)
T 1q0u_A 77 ITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVV 156 (219)
T ss_dssp EECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEE
T ss_pred EEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEE
Confidence 99999999999999999998765 68889999988766655555567899999999999999887788899999999
Q ss_pred echhhhhcCCChHHHHHHhhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEEecc
Q 003910 379 DEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGE 435 (787)
Q Consensus 379 DEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~ 435 (787)
||||++.+++|...+..++..+++.+|+++||||+++.+.++++.++.+|..+.+..
T Consensus 157 DEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 157 DEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp CSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred cCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 999999999999999999999999999999999999999999999999998887643
No 63
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=4.8e-34 Score=328.39 Aligned_cols=312 Identities=17% Similarity=0.228 Sum_probs=219.2
Q ss_pred CCCcHHHHHHHHHHH----cCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003910 246 EKPTSIQCQALPIIL----SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (787)
Q Consensus 246 ~~ptp~Q~~ai~~il----~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~ 321 (787)
..|+|+|.++++++. .++++|++++||+|||++++. ++..+... .....+|||||+ .|+.||.+++++|
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~-~i~~~~~~-----~~~~~~LIv~P~-~l~~qw~~e~~~~ 108 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIA-VFSDAKKE-----NELTPSLVICPL-SVLKNWEEELSKF 108 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHH-HHHHHHHT-----TCCSSEEEEECS-TTHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHH-HHHHHHhc-----CCCCCEEEEccH-HHHHHHHHHHHHH
Confidence 579999999999884 578999999999999999654 44444332 224568999996 5889999999999
Q ss_pred hhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHhhhcC
Q 003910 322 AKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIR 401 (787)
Q Consensus 322 ~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~~ 401 (787)
+. ++++.+++|+... .....++|+|+||+.|..... +....+++|||||||++.+.. ......+..++
T Consensus 109 ~~--~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~~l~ 176 (500)
T 1z63_A 109 AP--HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKELK 176 (500)
T ss_dssp CT--TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTT--SHHHHHHHTSC
T ss_pred CC--CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHh--HHHHHHHHhhc
Confidence 86 5666666665432 112358999999999976543 344578999999999998754 34555555553
Q ss_pred CCceEEEEeccCcH-HHHHH---H---------------------------------HHHhCCCeEEEecccc----ccc
Q 003910 402 PDRQTLLFSATMPR-KVEKL---A---------------------------------REILSDPVRVTVGEVG----MAN 440 (787)
Q Consensus 402 ~~~q~ll~SAT~~~-~v~~l---~---------------------------------~~~l~~p~~i~v~~~~----~~~ 440 (787)
..+.+++|||+.. .+.++ + ..++ .|..+...... ...
T Consensus 177 -~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l-~~~~lrr~k~~~~~~~~l 254 (500)
T 1z63_A 177 -SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAII-SPFILRRTKYDKAIINDL 254 (500)
T ss_dssp -EEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHH-TTTEECCCTTCHHHHTTS
T ss_pred -cCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHH-hhHeeeecccccchhhcC
Confidence 4678999999732 22222 1 1111 12222110000 001
Q ss_pred ccceEEEEecC--------------------------------------------------------CCcchHHHHHHhc
Q 003910 441 EDITQVVHVIP--------------------------------------------------------SDAEKLPWLLEKL 464 (787)
Q Consensus 441 ~~i~q~~~~~~--------------------------------------------------------~~~~k~~~L~~~L 464 (787)
+........+. ....|+..+.+++
T Consensus 255 p~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l 334 (500)
T 1z63_A 255 PDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEII 334 (500)
T ss_dssp CSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHH
Confidence 11111111111 1123444555555
Q ss_pred CCcC-CCCCEEEEecccccHHHHHHHHHHc-CCceeeccCCCCHHHHHHHHHHhhcC-Ccc-EEEEehhhhccCCCCCcc
Q 003910 465 PGMI-DDGDVLVFASKKTTVDEIESQLAQK-GFKAAALHGDKDQASRMEILQKFKSG-VYH-VLIATDVAARGLDIKSIK 540 (787)
Q Consensus 465 ~~~~-~~~kvLVF~~s~~~a~~l~~~L~~~-g~~v~~lhg~~~~~eR~~~l~~F~~G-~~~-VLVaT~v~~rGlDip~v~ 540 (787)
.... ...++||||++...++.++..|... ++.+..+||++++.+|..+++.|+++ ..+ +||+|+++++|||++.++
T Consensus 335 ~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~ 414 (500)
T 1z63_A 335 EEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSAN 414 (500)
T ss_dssp HHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCS
T ss_pred HHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCC
Confidence 4432 3569999999999999999999885 99999999999999999999999998 554 799999999999999999
Q ss_pred EEEEecCCCCHHHHHHHhhccCCCCCCC-cEEEEEEccc
Q 003910 541 SVVNFDIARDMDMHVHRIGRTGRAGDKD-GTAYTLVTQK 578 (787)
Q Consensus 541 ~VI~~d~p~s~~~y~QriGR~gR~G~~~-G~~i~l~~~~ 578 (787)
+||+||+|||+..|+||+||++|.|++. ..+|.|++..
T Consensus 415 ~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ 453 (500)
T 1z63_A 415 RVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 453 (500)
T ss_dssp EEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETT
T ss_pred EEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCC
Confidence 9999999999999999999999999543 4456677654
No 64
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=8.9e-34 Score=290.88 Aligned_cols=212 Identities=33% Similarity=0.561 Sum_probs=185.0
Q ss_pred CCCCCccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCC
Q 003910 218 FDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEE 297 (787)
Q Consensus 218 ~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~ 297 (787)
...|+++.+|+++++++.+++.|.+.||..|+|+|.++++.++++++++++++||+|||++|++|++.++... ..
T Consensus 7 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~-----~~ 81 (224)
T 1qde_A 7 TNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS-----VK 81 (224)
T ss_dssp BSCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT-----CC
T ss_pred cccCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc-----CC
Confidence 4567889999999999999999999999999999999999999999999999999999999999999887443 34
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEE
Q 003910 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLV 377 (787)
Q Consensus 298 ~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lV 377 (787)
++++||++||++|+.|+++.+++++...++++..++|+.....+...+.. ++|+|+||++|.+.+......+.++++||
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~iV 160 (224)
T 1qde_A 82 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKIKMFI 160 (224)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhCcEEE
Confidence 67899999999999999999999998888999999998877666554443 99999999999999988888889999999
Q ss_pred EechhhhhcCCChHHHHHHhhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEEecc
Q 003910 378 LDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGE 435 (787)
Q Consensus 378 iDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~ 435 (787)
|||||++.+++|...+..++..+++.+|+++||||+++.+..+++.++.+|+.+.+..
T Consensus 161 iDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~ 218 (224)
T 1qde_A 161 LDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK 218 (224)
T ss_dssp EETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC---
T ss_pred EcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 9999999999999999999999999999999999999999999999999998887643
No 65
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.7e-33 Score=284.77 Aligned_cols=202 Identities=35% Similarity=0.596 Sum_probs=186.9
Q ss_pred CCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEE
Q 003910 225 KTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC 304 (787)
Q Consensus 225 ~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl 304 (787)
.+|++++|++.+++.|...||..|+|+|.++++.++.++++++++|||+|||++|++|++.++... ..++++||+
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-----~~~~~~lil 77 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK-----KDNIQAMVI 77 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT-----SCSCCEEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc-----CCCeeEEEE
Confidence 479999999999999999999999999999999999999999999999999999999999886432 346789999
Q ss_pred cCcHHHHHHHHHHHHHHhhhc-CceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhh
Q 003910 305 APTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR 383 (787)
Q Consensus 305 ~PtreLa~Qi~~~~~~~~~~~-~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~ 383 (787)
+||++|+.|+++.++++.... ++.+.+++|+.....+...+..+++|+|+||++|.+.+......+.++++|||||||+
T Consensus 78 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~ 157 (206)
T 1vec_A 78 VPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK 157 (206)
T ss_dssp CSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHH
T ss_pred eCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHH
Confidence 999999999999999998776 7889999999988887777778899999999999999988777889999999999999
Q ss_pred hhcCCChHHHHHHhhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEE
Q 003910 384 MFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRV 431 (787)
Q Consensus 384 m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i 431 (787)
+.+.+|...+..++..+++.+|+++||||+|+.+..+++.++.+|+.+
T Consensus 158 ~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 158 LLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp HTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred hHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 999999999999999999899999999999999999999999999765
No 66
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=4.7e-33 Score=281.63 Aligned_cols=204 Identities=41% Similarity=0.685 Sum_probs=187.5
Q ss_pred CccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEc
Q 003910 226 TFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICA 305 (787)
Q Consensus 226 sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~ 305 (787)
+|+++++++.+++.|.+.+|..|+|+|.++++.+++++++++++|||+|||++|++|++.++..... ...++++||++
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~--~~~~~~~lil~ 79 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQE--RGRKPRALVLT 79 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCC--TTCCCSEEEEC
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccc--cCCCCcEEEEE
Confidence 6999999999999999999999999999999999999999999999999999999999998764321 23468899999
Q ss_pred CcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhh
Q 003910 306 PTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF 385 (787)
Q Consensus 306 PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~ 385 (787)
||++|+.|+++.+++++. .+++..++|+.....+...+..+++|+|+||++|.+++....+.+..+++|||||||++.
T Consensus 80 P~~~L~~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~ 157 (207)
T 2gxq_A 80 PTRELALQVASELTAVAP--HLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEML 157 (207)
T ss_dssp SSHHHHHHHHHHHHHHCT--TSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHH
T ss_pred CCHHHHHHHHHHHHHHhh--cceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhh
Confidence 999999999999999976 378889999998888877888899999999999999998877888999999999999999
Q ss_pred cCCChHHHHHHhhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEEe
Q 003910 386 DLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTV 433 (787)
Q Consensus 386 ~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v 433 (787)
+++|...+..++..+++.+|+++||||+++.+..+++.++.+|..+.+
T Consensus 158 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 158 SMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp HTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred ccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 999999999999999999999999999999999999999999988765
No 67
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=3.9e-34 Score=351.58 Aligned_cols=317 Identities=19% Similarity=0.210 Sum_probs=219.8
Q ss_pred CCCcHHHHHHHHHHHcC--CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhh
Q 003910 246 EKPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (787)
Q Consensus 246 ~~ptp~Q~~ai~~il~g--rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~ 323 (787)
..|+|+|.+++.+++.. .++|++++||+|||++++..+...+... ...++|||||+ .|+.||..++.+++
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g------~~~rvLIVvP~-sLl~Qw~~E~~~~f- 223 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSG------AAERVLIIVPE-TLQHQWLVEMLRRF- 223 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTS------SCCCEEEECCT-TTHHHHHHHHHHHS-
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhC------CCCeEEEEeCH-HHHHHHHHHHHHHh-
Confidence 57999999999998874 4899999999999999877765554321 23469999999 99999999997775
Q ss_pred hcCceEEEEECCCChHHHHH---HHhcCCcEEEeCHHHHHHHHHh-ccccccceeEEEEechhhhhcCCChH-HHHHHhh
Q 003910 324 SHGIRVSAVYGGMSKLDQFK---ELKAGCEIVIATPGRLIDMLKM-KALTMSRVTYLVLDEADRMFDLGFEP-QIRSIVG 398 (787)
Q Consensus 324 ~~~i~v~~~~gg~~~~~~~~---~l~~~~dIIV~Tp~~L~~~l~~-~~~~l~~i~~lViDEah~m~~~~f~~-~i~~il~ 398 (787)
++.+.++.++... .... ......+|+|+|++.|...... ..+....+++|||||||++.+..... ....++.
T Consensus 224 --~l~v~v~~~~~~~-~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~ 300 (968)
T 3dmq_A 224 --NLRFALFDDERYA-EAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIE 300 (968)
T ss_dssp --CCCCEECCHHHHH-HHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHH
T ss_pred --CCCEEEEccchhh-hhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHH
Confidence 6666655443211 1111 1112479999999988643211 22345679999999999998755331 2222333
Q ss_pred hc-CCCceEEEEeccCcH-HHH---HHHHH----------------------------HhCC------------------
Q 003910 399 QI-RPDRQTLLFSATMPR-KVE---KLARE----------------------------ILSD------------------ 427 (787)
Q Consensus 399 ~~-~~~~q~ll~SAT~~~-~v~---~l~~~----------------------------~l~~------------------ 427 (787)
.+ ....+++++|||+.. ... .++.. ++..
T Consensus 301 ~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~ 380 (968)
T 3dmq_A 301 QLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQ 380 (968)
T ss_dssp HHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTT
T ss_pred HHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcch
Confidence 33 245679999999732 111 11110 0000
Q ss_pred ----------------------------------CeEEEecccc---cccccceEEEE----------------------
Q 003910 428 ----------------------------------PVRVTVGEVG---MANEDITQVVH---------------------- 448 (787)
Q Consensus 428 ----------------------------------p~~i~v~~~~---~~~~~i~q~~~---------------------- 448 (787)
.+.+...... .....+.....
T Consensus 381 ~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (968)
T 3dmq_A 381 DIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSA 460 (968)
T ss_dssp CSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSG
T ss_pred hhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhh
Confidence 0000000000 00000000000
Q ss_pred ----------------------ecCCCcchHHHHHHhcCCcCCCCCEEEEecccccHHHHHHHHHH-cCCceeeccCCCC
Q 003910 449 ----------------------VIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQ-KGFKAAALHGDKD 505 (787)
Q Consensus 449 ----------------------~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~-~g~~v~~lhg~~~ 505 (787)
.......|...|.+++.. ...+++||||+++..++.|+..|.. .++.+..+||+|+
T Consensus 461 ~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~-~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~ 539 (968)
T 3dmq_A 461 EDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS-HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMS 539 (968)
T ss_dssp GGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH-TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSC
T ss_pred HHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh-CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 011223467777777765 3567999999999999999999995 5999999999999
Q ss_pred HHHHHHHHHHhhcCC--ccEEEEehhhhccCCCCCccEEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEE
Q 003910 506 QASRMEILQKFKSGV--YHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLV 575 (787)
Q Consensus 506 ~~eR~~~l~~F~~G~--~~VLVaT~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~ 575 (787)
+.+|..+++.|++|+ ++|||||+++++|||+|++++||+||+||++..|+||+||+||.|+ .+.+++++
T Consensus 540 ~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq-~~~v~v~~ 610 (968)
T 3dmq_A 540 IIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQ-AHDIQIHV 610 (968)
T ss_dssp TTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSS-CSCCEEEE
T ss_pred HHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCC-CceEEEEE
Confidence 999999999999998 9999999999999999999999999999999999999999999994 45444443
No 68
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=8.3e-32 Score=318.28 Aligned_cols=325 Identities=16% Similarity=0.178 Sum_probs=222.8
Q ss_pred CCCcHHHHHHHHHHH---------cCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHH
Q 003910 246 EKPTSIQCQALPIIL---------SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYL 316 (787)
Q Consensus 246 ~~ptp~Q~~ai~~il---------~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~ 316 (787)
..|+|+|.+++.++. .++.+|++++||+|||++++..+...+ ......+.....+|||||+ .|+.||.+
T Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~-~~~~~~~p~~~~~LiV~P~-sll~qW~~ 131 (644)
T 1z3i_X 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLL-KQSPDCKPEIDKVIVVSPS-SLVRNWYN 131 (644)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHH-HCCTTSSCSCSCEEEEECH-HHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHH-HhCccccCCCCcEEEEecH-HHHHHHHH
Confidence 479999999999985 346799999999999999666554443 3322122223468999997 78899999
Q ss_pred HHHHHhhhcCceEEEEECCCChHH--HHHHHhc------CCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCC
Q 003910 317 ETKKFAKSHGIRVSAVYGGMSKLD--QFKELKA------GCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG 388 (787)
Q Consensus 317 ~~~~~~~~~~i~v~~~~gg~~~~~--~~~~l~~------~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~ 388 (787)
++.+|+.. .+.++.+++|..... .+..... .++|+|+||+.|.... ..+....+++|||||||++.+.
T Consensus 132 E~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~vI~DEaH~ikn~- 207 (644)
T 1z3i_X 132 EVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA--EVLHKGKVGLVICDEGHRLKNS- 207 (644)
T ss_dssp HHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT--TTTTTSCCCEEEETTGGGCCTT-
T ss_pred HHHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH--HHhhcCCccEEEEECceecCCh-
Confidence 99999875 566777777654321 1222221 3789999999997643 2334457899999999999875
Q ss_pred ChHHHHHHhhhcCCCceEEEEeccCc-HHHHHH------------------HHHHh------------------------
Q 003910 389 FEPQIRSIVGQIRPDRQTLLFSATMP-RKVEKL------------------AREIL------------------------ 425 (787)
Q Consensus 389 f~~~i~~il~~~~~~~q~ll~SAT~~-~~v~~l------------------~~~~l------------------------ 425 (787)
.......+..++ ..+.+++|||+- +.+.++ .+.|.
T Consensus 208 -~~~~~~al~~l~-~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~ 285 (644)
T 1z3i_X 208 -DNQTYLALNSMN-AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQ 285 (644)
T ss_dssp -CHHHHHHHHHHC-CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHH
T ss_pred -hhHHHHHHHhcc-cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHH
Confidence 344555555554 456799999972 211100 00000
Q ss_pred -----CCCeEEEecc--cccccccceEEEEecC-----------------------------------------------
Q 003910 426 -----SDPVRVTVGE--VGMANEDITQVVHVIP----------------------------------------------- 451 (787)
Q Consensus 426 -----~~p~~i~v~~--~~~~~~~i~q~~~~~~----------------------------------------------- 451 (787)
-.|..+.-.. .....+.....+..+.
T Consensus 286 ~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l 365 (644)
T 1z3i_X 286 ELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPAL 365 (644)
T ss_dssp HHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHH
T ss_pred HHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHH
Confidence 0000000000 0000000000000000
Q ss_pred ------------------------------CCcchHHHHHHhcCCc--CCCCCEEEEecccccHHHHHHHHHHcCCceee
Q 003910 452 ------------------------------SDAEKLPWLLEKLPGM--IDDGDVLVFASKKTTVDEIESQLAQKGFKAAA 499 (787)
Q Consensus 452 ------------------------------~~~~k~~~L~~~L~~~--~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~ 499 (787)
....|+..|..++... ....++||||+++..++.|..+|...++.+..
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~ 445 (644)
T 1z3i_X 366 IYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVR 445 (644)
T ss_dssp HHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEE
Confidence 0122333333333222 13569999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHhhcCCc---cEEEEehhhhccCCCCCccEEEEecCCCCHHHHHHHhhccCCCCCC-CcEEEEEE
Q 003910 500 LHGDKDQASRMEILQKFKSGVY---HVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDK-DGTAYTLV 575 (787)
Q Consensus 500 lhg~~~~~eR~~~l~~F~~G~~---~VLVaT~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G~~-~G~~i~l~ 575 (787)
+||++++.+|..+++.|+++.. .+||+|+++++|||++.+++||+||+|||+..|.|++||++|.|++ ...+|.|+
T Consensus 446 l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv 525 (644)
T 1z3i_X 446 LDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLL 525 (644)
T ss_dssp ECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEE
T ss_pred EeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEE
Confidence 9999999999999999999865 4899999999999999999999999999999999999999999954 35677777
Q ss_pred ccc
Q 003910 576 TQK 578 (787)
Q Consensus 576 ~~~ 578 (787)
+..
T Consensus 526 ~~~ 528 (644)
T 1z3i_X 526 STG 528 (644)
T ss_dssp ETT
T ss_pred ECC
Confidence 765
No 69
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=6.8e-33 Score=283.60 Aligned_cols=208 Identities=30% Similarity=0.536 Sum_probs=183.8
Q ss_pred CCCccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCC
Q 003910 220 VPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGP 299 (787)
Q Consensus 220 ~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p 299 (787)
.+....+|++++|++.+++.|.+.||..|+|+|.++++.++++++++++++||+|||++|++|++..+... ..++
T Consensus 9 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~-----~~~~ 83 (220)
T 1t6n_A 9 VSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-----TGQV 83 (220)
T ss_dssp -----CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC-----TTCC
T ss_pred ccccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc-----CCCE
Confidence 44456779999999999999999999999999999999999999999999999999999999999886432 2356
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHhhhc-CceEEEEECCCChHHHHHHHhc-CCcEEEeCHHHHHHHHHhccccccceeEEE
Q 003910 300 IGVICAPTRELAHQIYLETKKFAKSH-GIRVSAVYGGMSKLDQFKELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYLV 377 (787)
Q Consensus 300 ~vLIl~PtreLa~Qi~~~~~~~~~~~-~i~v~~~~gg~~~~~~~~~l~~-~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lV 377 (787)
++|||+||++|+.||+++++++.... ++++.+++|+.....+...+.. .++|+|+||++|..++....+.+..+++||
T Consensus 84 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lV 163 (220)
T 1t6n_A 84 SVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFI 163 (220)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEE
Confidence 89999999999999999999998765 7899999999887777666665 479999999999999988878889999999
Q ss_pred Eechhhhhc-CCChHHHHHHhhhcCCCceEEEEeccCcHHHHHHHHHHhCCCeEEE
Q 003910 378 LDEADRMFD-LGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVT 432 (787)
Q Consensus 378 iDEah~m~~-~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~ 432 (787)
|||||++.+ .+|...+..++..+++.+|+++||||+++.++.+++.++.+|..+.
T Consensus 164 iDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 164 LDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp EESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred EcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 999999987 4788889999998888999999999999999999999999998765
No 70
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.1e-32 Score=290.34 Aligned_cols=204 Identities=36% Similarity=0.572 Sum_probs=182.8
Q ss_pred CCccccC--CCHHHHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEE
Q 003910 225 KTFEDCG--FSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGV 302 (787)
Q Consensus 225 ~sf~~~~--l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vL 302 (787)
.+|++++ +++.+++.|...||.+|+|+|.++++.++.++|+|++++||+|||++|++|++..+...... ...++++|
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~-~~~~~~~l 130 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFM-PRNGTGVL 130 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCC-GGGCCCEE
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhcccc-ccCCceEE
Confidence 4566665 99999999999999999999999999999999999999999999999999999998764322 23467899
Q ss_pred EEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhc-cccccceeEEEEech
Q 003910 303 ICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK-ALTMSRVTYLVLDEA 381 (787)
Q Consensus 303 Il~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~-~~~l~~i~~lViDEa 381 (787)
||+||++||.|+++.+++++...++.+.+++|+.....+...+..+++|||+||++|.+++... .+.+.++.+||||||
T Consensus 131 il~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEa 210 (262)
T 3ly5_A 131 ILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEA 210 (262)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSH
T ss_pred EEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcCh
Confidence 9999999999999999999988899999999999998888888889999999999999988764 367889999999999
Q ss_pred hhhhcCCChHHHHHHhhhcCCCceEEEEeccCcHHHHHHHHHHhCCCe
Q 003910 382 DRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPV 429 (787)
Q Consensus 382 h~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~ 429 (787)
|+|.+++|...+..++..+++.+|+++||||+++.+..+++.++.++.
T Consensus 211 h~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 211 DRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp HHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred HHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999999987654
No 71
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=1e-32 Score=324.01 Aligned_cols=284 Identities=20% Similarity=0.242 Sum_probs=210.0
Q ss_pred HHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEEC
Q 003910 255 ALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYG 334 (787)
Q Consensus 255 ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~g 334 (787)
.....++++++|++||||||||+. ++..+... +.+||++|||+||.|+++.+++. ++.+.+++|
T Consensus 148 p~ar~l~rk~vlv~apTGSGKT~~----al~~l~~~--------~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG 211 (677)
T 3rc3_A 148 PDARAMQRKIIFHSGPTNSGKTYH----AIQKYFSA--------KSGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTG 211 (677)
T ss_dssp HHHHTSCCEEEEEECCTTSSHHHH----HHHHHHHS--------SSEEEEESSHHHHHHHHHHHHHT----TCCEEEECS
T ss_pred HHHHhcCCCEEEEEcCCCCCHHHH----HHHHHHhc--------CCeEEEeCHHHHHHHHHHHHHhc----CCcEEEEEC
Confidence 344567889999999999999983 34444332 23599999999999999998776 788998988
Q ss_pred CCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHhhhcC-CCceEEEEeccC
Q 003910 335 GMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIR-PDRQTLLFSATM 413 (787)
Q Consensus 335 g~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~~-~~~q~ll~SAT~ 413 (787)
+...... .-....+++++|++.+. .+..+++|||||||+|.+.+|...+..++..++ ...|++++|||.
T Consensus 212 ~~~~iv~--TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~ 281 (677)
T 3rc3_A 212 EERVTVQ--PNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAI 281 (677)
T ss_dssp SCEECCS--TTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGH
T ss_pred CeeEEec--CCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchH
Confidence 7654100 00012677888864332 246789999999999999999999998888887 778999999995
Q ss_pred cHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcchHHHHHHhcCCcCCCCCEEEEecccccHHHHHHHHHHc
Q 003910 414 PRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK 493 (787)
Q Consensus 414 ~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~ 493 (787)
+ .+..++... .....+...... .. ....... + ..+... ..+.||||+++..++.++..|...
T Consensus 282 ~-~i~~l~~~~-~~~~~v~~~~r~------~~-l~~~~~~---l----~~l~~~--~~g~iIf~~s~~~ie~la~~L~~~ 343 (677)
T 3rc3_A 282 D-LVMELMYTT-GEEVEVRDYKRL------TP-ISVLDHA---L----ESLDNL--RPGDCIVCFSKNDIYSVSRQIEIR 343 (677)
T ss_dssp H-HHHHHHHHH-TCCEEEEECCCS------SC-EEECSSC---C----CSGGGC--CTTEEEECSSHHHHHHHHHHHHHT
T ss_pred H-HHHHHHHhc-CCceEEEEeeec------ch-HHHHHHH---H----HHHHhc--CCCCEEEEcCHHHHHHHHHHHHhc
Confidence 3 445555443 333333221000 00 0011000 0 111111 345688999999999999999999
Q ss_pred CCceeeccCCCCHHHHHHHHHHhhc--CCccEEEEehhhhccCCCCCccEEEEecC--------------CCCHHHHHHH
Q 003910 494 GFKAAALHGDKDQASRMEILQKFKS--GVYHVLIATDVAARGLDIKSIKSVVNFDI--------------ARDMDMHVHR 557 (787)
Q Consensus 494 g~~v~~lhg~~~~~eR~~~l~~F~~--G~~~VLVaT~v~~rGlDip~v~~VI~~d~--------------p~s~~~y~Qr 557 (787)
++.+..+||+|++.+|..+++.|++ |.++|||||+++++|||| ++++||++++ |.+..+|+||
T Consensus 344 g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR 422 (677)
T 3rc3_A 344 GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQI 422 (677)
T ss_dssp TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHH
T ss_pred CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHH
Confidence 9999999999999999999999999 889999999999999999 9999999999 8899999999
Q ss_pred hhccCCCCCC--CcEEEEEEccccHHHHH
Q 003910 558 IGRTGRAGDK--DGTAYTLVTQKEARFAG 584 (787)
Q Consensus 558 iGR~gR~G~~--~G~~i~l~~~~d~~~~~ 584 (787)
+|||||.|.. .|.|+.+. ..+...+.
T Consensus 423 ~GRAGR~g~~g~~G~v~~l~-~~d~~~~~ 450 (677)
T 3rc3_A 423 AGRAGRFSSRFKEGEVTTMN-HEDLSLLK 450 (677)
T ss_dssp HTTBTCTTSSCSSEEEEESS-TTHHHHHH
T ss_pred hcCCCCCCCCCCCEEEEEEe-cchHHHHH
Confidence 9999999943 46666554 44444333
No 72
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.98 E-value=1.1e-30 Score=298.76 Aligned_cols=317 Identities=20% Similarity=0.244 Sum_probs=234.3
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhc
Q 003910 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (787)
Q Consensus 246 ~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~ 325 (787)
..|+++|..+.-.+.+|+ |....||+|||+++.+|++...+. |..+.||+||+.||.|-++++..+...+
T Consensus 74 ~r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~--------G~~vhVvT~ndyLA~rdae~m~~l~~~L 143 (822)
T 3jux_A 74 MRPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI--------GKGVHLVTVNDYLARRDALWMGPVYLFL 143 (822)
T ss_dssp CCCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT--------SSCEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc--------CCceEEEeccHHHHHhHHHHHHHHHHHh
Confidence 359999999999888887 899999999999999999866533 5669999999999999999999999999
Q ss_pred CceEEEEECC--------------------------------------------------CChHHHHHHHhcCCcEEEeC
Q 003910 326 GIRVSAVYGG--------------------------------------------------MSKLDQFKELKAGCEIVIAT 355 (787)
Q Consensus 326 ~i~v~~~~gg--------------------------------------------------~~~~~~~~~l~~~~dIIV~T 355 (787)
|+.|.+++.. .+..+. ++ .-.|||+.+|
T Consensus 144 glsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~er-r~-aY~~DItYgT 221 (822)
T 3jux_A 144 GLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITR-KE-AYLCDVTYGT 221 (822)
T ss_dssp TCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCH-HH-HHHSSEEEEE
T ss_pred CCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHH-HH-HhcCCCEEcc
Confidence 9999999982 111111 11 1238999999
Q ss_pred HHHHH-HHHHhc------cccccceeEEEEechhhhh-cC--------------------------------CC------
Q 003910 356 PGRLI-DMLKMK------ALTMSRVTYLVLDEADRMF-DL--------------------------------GF------ 389 (787)
Q Consensus 356 p~~L~-~~l~~~------~~~l~~i~~lViDEah~m~-~~--------------------------------~f------ 389 (787)
..-|- +.|..+ ......+.|.||||+|.|+ |. .|
T Consensus 222 n~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek~ 301 (822)
T 3jux_A 222 NNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKA 301 (822)
T ss_dssp HHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCSS
T ss_pred CcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEccc
Confidence 98874 344321 2235678999999999763 10 00
Q ss_pred ------h---HHHHHH---------------------hh---hcCC----------------------------------
Q 003910 390 ------E---PQIRSI---------------------VG---QIRP---------------------------------- 402 (787)
Q Consensus 390 ------~---~~i~~i---------------------l~---~~~~---------------------------------- 402 (787)
. ..+..+ +. .+..
T Consensus 302 ~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQa 381 (822)
T 3jux_A 302 RTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQA 381 (822)
T ss_dssp SCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHHH
T ss_pred CeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHHH
Confidence 0 000000 00 0000
Q ss_pred ---------------------------CceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcc
Q 003910 403 ---------------------------DRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAE 455 (787)
Q Consensus 403 ---------------------------~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~ 455 (787)
-.++.+||+|+.....++...| .-. .+.+. .......+.+...+......
T Consensus 382 iEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY-~l~-vv~IP-tnkp~~R~d~~d~vy~t~~e 458 (822)
T 3jux_A 382 IEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVY-GME-VVVIP-THKPMIRKDHDDLVFRTQKE 458 (822)
T ss_dssp HHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHS-CCC-EEECC-CSSCCCCEECCCEEESSHHH
T ss_pred HHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHh-CCe-EEEEC-CCCCcceeecCcEEEecHHH
Confidence 0368899999988776665555 322 33332 22222233332233345677
Q ss_pred hHHHHHHhcCCcC-CCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccC
Q 003910 456 KLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGL 534 (787)
Q Consensus 456 k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGl 534 (787)
|+..++..+.... ...++||||+++..++.|+..|.+.|+++.+|||+..+.++..+...|+.| .|||||++++||+
T Consensus 459 K~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGt 536 (822)
T 3jux_A 459 KYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGT 536 (822)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTC
T ss_pred HHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCc
Confidence 8888888876543 356899999999999999999999999999999996555555555555555 6999999999999
Q ss_pred CCC--------CccEEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEccccH
Q 003910 535 DIK--------SIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEA 580 (787)
Q Consensus 535 Dip--------~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~ 580 (787)
||+ +..+||+|+.|.+...|+||+|||||.| .+|.+++|++..|.
T Consensus 537 DI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG-~~G~a~~fvsleD~ 589 (822)
T 3jux_A 537 DIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQG-DPGESIFFLSLEDD 589 (822)
T ss_dssp CCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSS-CCCEEEEEEETTSH
T ss_pred CccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCC-CCeeEEEEechhHH
Confidence 998 6679999999999999999999999999 68999999999884
No 73
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.97 E-value=1.1e-29 Score=310.24 Aligned_cols=324 Identities=14% Similarity=0.129 Sum_probs=219.5
Q ss_pred HHHHHHHHHCC-------CCCCcHHHHHHHHHHHc--------------CCCEEEEccCCCchhHHHHHHHHHHHhcCcc
Q 003910 234 TQLMHAISKQG-------YEKPTSIQCQALPIILS--------------GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPE 292 (787)
Q Consensus 234 ~~l~~~l~~~g-------~~~ptp~Q~~ai~~il~--------------grdvii~a~TGsGKTla~llp~l~~l~~~~~ 292 (787)
+.+++.|...- ...|+|+|..|++.++. ++++|++++||||||+++ ++++..+...
T Consensus 251 ~~ll~~l~~f~~~~~~~~~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~-- 327 (1038)
T 2w00_A 251 HTLLNVLVNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL-- 327 (1038)
T ss_dssp HHHHHHHHHSEEECTTCCEEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC--
T ss_pred HHHHHHHHhheeeccccccccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc--
Confidence 44555555431 23599999999999875 378999999999999996 6666544321
Q ss_pred cccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHh-cCCcEEEeCHHHHHHHHHhcc--cc
Q 003910 293 LQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELK-AGCEIVIATPGRLIDMLKMKA--LT 369 (787)
Q Consensus 293 ~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~-~~~dIIV~Tp~~L~~~l~~~~--~~ 369 (787)
...+++|||||+++|+.||.+++.++... .+.++.+.......+. .+.+|||+||++|..++.... ..
T Consensus 328 ---~~~~rvLvlvpr~eL~~Q~~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~ 398 (1038)
T 2w00_A 328 ---DFIDKVFFVVDRKDLDYQTMKEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPV 398 (1038)
T ss_dssp ---TTCCEEEEEECGGGCCHHHHHHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGG
T ss_pred ---CCCceEEEEeCcHHHHHHHHHHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhc
Confidence 23468999999999999999999988642 1334555555555564 468999999999999876532 24
Q ss_pred ccceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEeccCcHHHH----HHHHHHhCC-----------------C
Q 003910 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVE----KLAREILSD-----------------P 428 (787)
Q Consensus 370 l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~----~l~~~~l~~-----------------p 428 (787)
+..+.+|||||||++.. ......++..++ ..++++||||+..... .....++++ |
T Consensus 399 ~~~~~lvIiDEAHrs~~---~~~~~~I~~~~p-~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p 474 (1038)
T 2w00_A 399 YNQQVVFIFDECHRSQF---GEAQKNLKKKFK-RYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLK 474 (1038)
T ss_dssp GGSCEEEEEESCCTTHH---HHHHHHHHHHCS-SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCC
T ss_pred cccccEEEEEccchhcc---hHHHHHHHHhCC-cccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCC
Confidence 56789999999999764 233455555554 5899999999864321 112223332 3
Q ss_pred eEEEecccccccc------c------ceEEEEecCCCcchHHHHHH----hcCCc-------CCCCCEEEEecccccHHH
Q 003910 429 VRVTVGEVGMANE------D------ITQVVHVIPSDAEKLPWLLE----KLPGM-------IDDGDVLVFASKKTTVDE 485 (787)
Q Consensus 429 ~~i~v~~~~~~~~------~------i~q~~~~~~~~~~k~~~L~~----~L~~~-------~~~~kvLVF~~s~~~a~~ 485 (787)
+.+.......... + +.+. ..+ ....+...+.. .+... ....++||||+++..|..
T Consensus 475 ~~v~y~~v~~~~~~~~~e~d~~~~~~i~~~-~~l-~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~ 552 (1038)
T 2w00_A 475 FKVDYNDVRPQFKSLETETDEKKLSAAENQ-QAF-LHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKA 552 (1038)
T ss_dssp EEEEECCCCGGGHHHHTCCCHHHHHHTCST-TTT-TCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHH
T ss_pred eEEEEEeccchhhhccccccHHHHHHHHHH-HHh-cCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHH
Confidence 3222111000000 0 0000 000 01122222222 21111 123579999999999999
Q ss_pred HHHHHHHcC------------Cce-eeccCC----------C----------CH--------------------------
Q 003910 486 IESQLAQKG------------FKA-AALHGD----------K----------DQ-------------------------- 506 (787)
Q Consensus 486 l~~~L~~~g------------~~v-~~lhg~----------~----------~~-------------------------- 506 (787)
+++.|...+ +.+ .++||+ + ++
T Consensus 553 ~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~ 632 (1038)
T 2w00_A 553 YYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSN 632 (1038)
T ss_dssp HHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHH
T ss_pred HHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccch
Confidence 999998754 455 455643 2 22
Q ss_pred ---HHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEEEecCCCCHHHHHHHhhccCCCCCC---CcEEEEEEc
Q 003910 507 ---ASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDK---DGTAYTLVT 576 (787)
Q Consensus 507 ---~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G~~---~G~~i~l~~ 576 (787)
..|..++++|++|+++|||+|+++.+|+|+|.+ +|+++|.|.....|+|++||++|.+.. .|.++.|+.
T Consensus 633 ~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 633 GFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp HHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred hhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 248889999999999999999999999999999 788999999999999999999999832 366777664
No 74
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.95 E-value=7.1e-27 Score=271.72 Aligned_cols=130 Identities=19% Similarity=0.253 Sum_probs=113.8
Q ss_pred CCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHh
Q 003910 243 QGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (787)
Q Consensus 243 ~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~ 322 (787)
.|+ .||++|..++|.+++|+ |+.+.||+|||++|++|++...+. +..++||+||++||.|+++++..++
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~--------G~qv~VvTPTreLA~Qdae~m~~l~ 144 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT--------GKGVHVVTVNDYLARRDAEWMGPVY 144 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT--------CSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh--------CCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 588 99999999999999998 999999999999999999765532 4569999999999999999999999
Q ss_pred hhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHH-HHHHHhcc------cccc---ceeEEEEechhhhh
Q 003910 323 KSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRL-IDMLKMKA------LTMS---RVTYLVLDEADRMF 385 (787)
Q Consensus 323 ~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L-~~~l~~~~------~~l~---~i~~lViDEah~m~ 385 (787)
..+++++.+++||.+.. .+....+++|+|+||++| ++++..+. +.+. .+.++||||||.|+
T Consensus 145 ~~lGLsv~~i~Gg~~~~--~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 145 RGLGLSVGVIQHASTPA--ERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp HTTTCCEEECCTTCCHH--HHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred HhcCCeEEEEeCCCCHH--HHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 99999999999998743 334455799999999999 88887652 4577 89999999999986
No 75
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.95 E-value=1.1e-27 Score=239.55 Aligned_cols=180 Identities=36% Similarity=0.540 Sum_probs=147.6
Q ss_pred HHHhCCCeEEEecccccccccceEEEEecCCCcchHHHHHHhcCCcCCCCCEEEEecccccHHHHHHHHHHcCCceeecc
Q 003910 422 REILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALH 501 (787)
Q Consensus 422 ~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lh 501 (787)
..|+.+|..+.++.......+|.|.+..+. ...|...|.++|... .+++||||+++..++.++..|...++.+..+|
T Consensus 9 ~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~-~~~K~~~L~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lh 85 (191)
T 2p6n_A 9 SGVDLGTENLYFQSMGAASLDVIQEVEYVK-EEAKMVYLLECLQKT--PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIH 85 (191)
T ss_dssp -------------------CCSEEEEEECC-GGGHHHHHHHHHTTS--CSCEEEECSCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred ccccCCCEEEEECCCCCCCcCceEEEEEcC-hHHHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEe
Confidence 467888999999888888889999998875 467999999988763 46899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEccc-cH
Q 003910 502 GDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQK-EA 580 (787)
Q Consensus 502 g~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~-d~ 580 (787)
|++++.+|..+++.|++|+++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.| +.|.|++|+++. +.
T Consensus 86 g~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g-~~g~~i~l~~~~~~~ 164 (191)
T 2p6n_A 86 GGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSG-NTGIATTFINKACDE 164 (191)
T ss_dssp TTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC----CCEEEEEECTTSCH
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCC-CCcEEEEEEcCchhH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 579999999986 78
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHH
Q 003910 581 RFAGELVNSLIAAGQNVSMELMDLA 605 (787)
Q Consensus 581 ~~~~~l~~~l~~~~~~vp~~l~~~a 605 (787)
.++..+.+.|...++.+|++|.+++
T Consensus 165 ~~~~~l~~~l~~~~~~~p~~l~~~~ 189 (191)
T 2p6n_A 165 SVLMDLKALLLEAKQKVPPVLQVLH 189 (191)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHSTT
T ss_pred HHHHHHHHHHHHccCcCCHHHHhhc
Confidence 8999999999999999999987654
No 76
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.95 E-value=5.6e-27 Score=277.01 Aligned_cols=176 Identities=19% Similarity=0.274 Sum_probs=134.9
Q ss_pred CCceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcchHHHHHHhcCCcC-CCCCEEEEeccc
Q 003910 402 PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKK 480 (787)
Q Consensus 402 ~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~-~~~kvLVF~~s~ 480 (787)
..+|+++||||++...... ........+.......+ ...+.....+...|+..|.... ...++||||+++
T Consensus 379 ~~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l~~p-----~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 449 (664)
T 1c4o_A 379 RVSQVVFVSATPGPFELAH----SGRVVEQIIRPTGLLDP-----LVRVKPTENQILDLMEGIRERAARGERTLVTVLTV 449 (664)
T ss_dssp TCSEEEEEESSCCHHHHHH----CSEEEEECSCTTCCCCC-----EEEEECSTTHHHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred hcCCEEEEecCCCHHHHHh----hhCeeeeeeccCCCCCC-----eEEEecccchHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 3679999999998653211 11111111111111111 1112223345566655554433 456999999999
Q ss_pred ccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEEEecC-----CCCHHHHH
Q 003910 481 TTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDI-----ARDMDMHV 555 (787)
Q Consensus 481 ~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~~d~-----p~s~~~y~ 555 (787)
..++.|+++|...++.+..+||++++.+|..+++.|+.|+++|||||+++++|+|+|++++||++|. |.+...|+
T Consensus 450 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~i 529 (664)
T 1c4o_A 450 RMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI 529 (664)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHH
T ss_pred HHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999997 99999999
Q ss_pred HHhhccCCCCCCCcEEEEEEccccHHHHHHHHH
Q 003910 556 HRIGRTGRAGDKDGTAYTLVTQKEARFAGELVN 588 (787)
Q Consensus 556 QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~ 588 (787)
||+||+||.+ .|.|++|+++.+..+...+.+
T Consensus 530 Qr~GRagR~~--~G~~i~~~~~~~~~~~~~i~~ 560 (664)
T 1c4o_A 530 QTIGRAARNA--RGEVWLYADRVSEAMQRAIEE 560 (664)
T ss_dssp HHHGGGTTST--TCEEEEECSSCCHHHHHHHHH
T ss_pred HHHCccCcCC--CCEEEEEEcCCCHHHHHHHHH
Confidence 9999999986 699999999887766555443
No 77
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.94 E-value=1.4e-26 Score=230.48 Aligned_cols=169 Identities=38% Similarity=0.618 Sum_probs=141.5
Q ss_pred ccccccceEEEEecCCCcchHHHHHHhcCCcCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHh
Q 003910 437 GMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKF 516 (787)
Q Consensus 437 ~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F 516 (787)
...+.+|.|.+..++ ...|...|.++|.......++||||+++..++.++..|...++.+..+||+|++.+|..+++.|
T Consensus 14 ~~~~~~i~q~~~~v~-~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f 92 (185)
T 2jgn_A 14 GSTSENITQKVVWVE-ESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQF 92 (185)
T ss_dssp --CCTTEEEEEEECC-GGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHH
T ss_pred CCCCCCceEEEEEeC-cHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHH
Confidence 345678899988875 4678889988887755667999999999999999999999999999999999999999999999
Q ss_pred hcCCccEEEEehhhhccCCCCCccEEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEccccHHHHHHHHHHHHHcCCC
Q 003910 517 KSGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQN 596 (787)
Q Consensus 517 ~~G~~~VLVaT~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~l~~~~~~ 596 (787)
++|.++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.| +.|.|++|+++.+...+..+.+.+....+.
T Consensus 93 ~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g-~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~ 171 (185)
T 2jgn_A 93 RSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVG-NLGLATSFFNERNINITKDLLDLLVEAKQE 171 (185)
T ss_dssp HHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTT-SCEEEEEEECGGGGGGHHHHHHHHHHTTCC
T ss_pred HcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCC-CCcEEEEEEchhhHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999999999999999999999999999 679999999999999999999999999999
Q ss_pred ccHHHHHHHHh
Q 003910 597 VSMELMDLAMK 607 (787)
Q Consensus 597 vp~~l~~~a~~ 607 (787)
+|.+|.+++..
T Consensus 172 ~~~~l~~~a~~ 182 (185)
T 2jgn_A 172 VPSWLENMAYE 182 (185)
T ss_dssp CCHHHHHHHC-
T ss_pred CCHHHHHHHHH
Confidence 99999998753
No 78
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.94 E-value=8.4e-26 Score=266.82 Aligned_cols=175 Identities=20% Similarity=0.298 Sum_probs=135.1
Q ss_pred CCceEEEEeccCcHHHHHHHHHHhCCCeEEEecccccccccceEEEEecCCCcchHHHHHHhcCCcC-CCCCEEEEeccc
Q 003910 402 PDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMI-DDGDVLVFASKK 480 (787)
Q Consensus 402 ~~~q~ll~SAT~~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~-~~~kvLVF~~s~ 480 (787)
..+|+++||||+++..... ........+.......+. +. +.....+...|+..|.... ...++||||+++
T Consensus 385 ~~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l~~p~----i~-v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 455 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEH----TDEMVEQIIRPTGLLDPL----ID-VRPIEGQIDDLIGEIQARIERNERVLVTTLTK 455 (661)
T ss_dssp TCSEEEEECSSCCHHHHHH----CSSCEEECCCTTCCCCCE----EE-EECSTTHHHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred cCCCEEEEecCCChhHHHh----hhCeeeeeecccCCCCCe----EE-EecccchHHHHHHHHHHHHhcCCeEEEEECCH
Confidence 4689999999998653222 122222222111111111 11 1223345556655555443 456999999999
Q ss_pred ccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEEEecC-----CCCHHHHH
Q 003910 481 TTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDI-----ARDMDMHV 555 (787)
Q Consensus 481 ~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~~d~-----p~s~~~y~ 555 (787)
..++.|+..|...++.+..+||++++.+|..+++.|+.|+++|||||+++++|+|+|++++||++|. |.+...|+
T Consensus 456 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~i 535 (661)
T 2d7d_A 456 KMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI 535 (661)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHH
T ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 99999999
Q ss_pred HHhhccCCCCCCCcEEEEEEccccHHHHHHHH
Q 003910 556 HRIGRTGRAGDKDGTAYTLVTQKEARFAGELV 587 (787)
Q Consensus 556 QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~ 587 (787)
||+||+||. ..|.|++|+++.+..+...+.
T Consensus 536 Qr~GRagR~--~~G~~i~~~~~~~~~~~~~i~ 565 (661)
T 2d7d_A 536 QTIGRAARN--AEGRVIMYADKITKSMEIAIN 565 (661)
T ss_dssp HHHHTTTTS--TTCEEEEECSSCCHHHHHHHH
T ss_pred HHhCcccCC--CCCEEEEEEeCCCHHHHHHHH
Confidence 999999998 479999999988776555443
No 79
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.92 E-value=2e-24 Score=210.33 Aligned_cols=150 Identities=33% Similarity=0.613 Sum_probs=136.7
Q ss_pred cccccceEEEEecCCCcchHHHHHHhcCCcCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhh
Q 003910 438 MANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFK 517 (787)
Q Consensus 438 ~~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~ 517 (787)
....+|.|.+..+. ...|+..|..+|... ..+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|+
T Consensus 5 ~~~~~i~~~~~~~~-~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~ 82 (163)
T 2hjv_A 5 LTTRNIEHAVIQVR-EENKFSLLKDVLMTE-NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFK 82 (163)
T ss_dssp -CCCCEEEEEEECC-GGGHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred cCcccceEEEEECC-hHHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 34567888888775 467888888887653 4569999999999999999999999999999999999999999999999
Q ss_pred cCCccEEEEehhhhccCCCCCccEEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEccccHHHHHHHHHHH
Q 003910 518 SGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSL 590 (787)
Q Consensus 518 ~G~~~VLVaT~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~l 590 (787)
+|.++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.| +.|.+++|+++.+..++..+.+.+
T Consensus 83 ~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g-~~g~~~~~~~~~~~~~~~~i~~~~ 154 (163)
T 2hjv_A 83 RGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAG-NKGKAISFVTAFEKRFLADIEEYI 154 (163)
T ss_dssp TTSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTT-CCEEEEEEECGGGHHHHHHHHHHH
T ss_pred cCCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCC-CCceEEEEecHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 679999999999999888887766
No 80
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.92 E-value=9.5e-25 Score=215.23 Aligned_cols=153 Identities=29% Similarity=0.493 Sum_probs=135.7
Q ss_pred ccccceEEEEecCCCcchHHHHHHhcCCcCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhc
Q 003910 439 ANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKS 518 (787)
Q Consensus 439 ~~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~ 518 (787)
...+|.|.+..++....|...|..++... ..+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~ 82 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSI-TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRD 82 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTS-CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHT
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 45678899988877666999998888764 56799999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEehhhhccCCCCCccEEEEecCC------CCHHHHHHHhhccCCCCCCCcEEEEEEccccHHHHHHHHHHHHH
Q 003910 519 GVYHVLIATDVAARGLDIKSIKSVVNFDIA------RDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIA 592 (787)
Q Consensus 519 G~~~VLVaT~v~~rGlDip~v~~VI~~d~p------~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~l~~ 592 (787)
|.++|||||+++++|+|+|++++||+||+| .++..|+||+||+||.| +.|.|++|+++.+...+..+.+.+..
T Consensus 83 g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g-~~g~~~~~~~~~~~~~~~~i~~~~~~ 161 (175)
T 2rb4_A 83 GKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFG-KKGLAFNMIEVDELPSLMKIQDHFNS 161 (175)
T ss_dssp TSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC-----CCEEEEEEECGGGHHHHHHHHHHHTC
T ss_pred CCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCC-CCceEEEEEccchHHHHHHHHHHhcC
Confidence 999999999999999999999999999999 89999999999999999 67999999999998888877776643
Q ss_pred c
Q 003910 593 A 593 (787)
Q Consensus 593 ~ 593 (787)
.
T Consensus 162 ~ 162 (175)
T 2rb4_A 162 S 162 (175)
T ss_dssp C
T ss_pred c
Confidence 3
No 81
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.91 E-value=7.9e-25 Score=213.67 Aligned_cols=158 Identities=27% Similarity=0.480 Sum_probs=136.4
Q ss_pred ccceEEEEecCCCcchHHHHHHhcCCcCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCC
Q 003910 441 EDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGV 520 (787)
Q Consensus 441 ~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~ 520 (787)
.+|.|.+..+.....|...|..++... ..+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|.
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 80 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGS 80 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHHHT-TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred CCcEEEEEECCcchhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 357788888866555888888887754 5679999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEehhhhccCCCCCccEEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEccccHHHHHHHHHHHHHcCCCccHH
Q 003910 521 YHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSME 600 (787)
Q Consensus 521 ~~VLVaT~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~l~~~~~~vp~~ 600 (787)
++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.| +.|.|++|+++.+...+..+.+.+....+.+|..
T Consensus 81 ~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (165)
T 1fuk_A 81 SRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFG-RKGVAINFVTNEDVGAMRELEKFYSTQIEELPSD 159 (165)
T ss_dssp CSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC------CEEEEEEETTTHHHHHHHHHHSSCCCEECCSC
T ss_pred CEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCC-CCceEEEEEcchHHHHHHHHHHHHccCccccCcc
Confidence 999999999999999999999999999999999999999999999 6799999999999988888877776555555543
No 82
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.91 E-value=1.3e-24 Score=213.75 Aligned_cols=159 Identities=26% Similarity=0.417 Sum_probs=137.6
Q ss_pred cccceEEEEecCCCcchHHHHHHhcCCcCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcC
Q 003910 440 NEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSG 519 (787)
Q Consensus 440 ~~~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G 519 (787)
...+.|.+..+. ...|...|..++... ..+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|
T Consensus 3 ~~~i~q~~~~~~-~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g 80 (172)
T 1t5i_A 3 LHGLQQYYVKLK-DNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDF 80 (172)
T ss_dssp --CCEEEEEECC-GGGHHHHHHHHHHHS-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred cCCeEEEEEECC-hHHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCC
Confidence 346778877775 467888888887754 457999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEehhhhccCCCCCccEEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEccc-cHHHHHHHHHHHHHcCCCcc
Q 003910 520 VYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQK-EARFAGELVNSLIAAGQNVS 598 (787)
Q Consensus 520 ~~~VLVaT~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~-d~~~~~~l~~~l~~~~~~vp 598 (787)
.++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.| +.|.+++|+++. +...+..+.+.+...-..+|
T Consensus 81 ~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g-~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (172)
T 1t5i_A 81 QRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFG-TKGLAITFVSDENDAKILNDVQDRFEVNISELP 159 (172)
T ss_dssp SCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGG-CCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC
T ss_pred CCcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCC-CCcEEEEEEcChhHHHHHHHHHHHHhcchhhCC
Confidence 9999999999999999999999999999999999999999999999 679999999876 55677777777655555666
Q ss_pred HHH
Q 003910 599 MEL 601 (787)
Q Consensus 599 ~~l 601 (787)
.++
T Consensus 160 ~~~ 162 (172)
T 1t5i_A 160 DEI 162 (172)
T ss_dssp ---
T ss_pred hhh
Confidence 653
No 83
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.89 E-value=5.2e-23 Score=209.25 Aligned_cols=139 Identities=36% Similarity=0.499 Sum_probs=126.9
Q ss_pred CCcchHHHHHHhcCCcCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhh
Q 003910 452 SDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAA 531 (787)
Q Consensus 452 ~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~ 531 (787)
....|+..|..++... ..+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|.++|||||++++
T Consensus 14 ~~~~k~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~ 92 (212)
T 3eaq_A 14 PVRGRLEVLSDLLYVA-SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAA 92 (212)
T ss_dssp CTTSHHHHHHHHHHHH-CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTT
T ss_pred CHHHHHHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhh
Confidence 3467888888877643 467999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCccEEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEccccHHHHHHHHHHHHH
Q 003910 532 RGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIA 592 (787)
Q Consensus 532 rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~l~~ 592 (787)
+|+|+|++++||+||+|+++..|+||+||+||.| +.|.|++|+++.+...+..+.+.+..
T Consensus 93 ~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g-~~g~~~~l~~~~~~~~~~~i~~~~~~ 152 (212)
T 3eaq_A 93 RGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAG-RGGRVVLLYGPRERRDVEALERAVGR 152 (212)
T ss_dssp CSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC---BEEEEEECGGGHHHHHHHHHHHSS
T ss_pred cCCCCccCcEEEECCCCcCHHHHHHHhcccCCCC-CCCeEEEEEchhHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999 67999999999998888887776643
No 84
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.89 E-value=3.1e-23 Score=210.38 Aligned_cols=166 Identities=23% Similarity=0.203 Sum_probs=124.0
Q ss_pred CCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHH-HHHHHHHHh
Q 003910 244 GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQ-IYLETKKFA 322 (787)
Q Consensus 244 g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Q-i~~~~~~~~ 322 (787)
....|+|+|.++++.++.++++|++++||+|||++|+++++..+..... ...++++||++|+++|+.| |.+.+.++.
T Consensus 30 ~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~~~~lil~p~~~L~~q~~~~~~~~~~ 107 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKK--ASEPGKVIVLVNKVLLVEQLFRKEFQPFL 107 (216)
T ss_dssp CCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHH--TTCCCCEEEEESSHHHHHHHHHHTHHHHH
T ss_pred CCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhccc--ccCCCcEEEEECHHHHHHHHHHHHHHHHh
Confidence 4468999999999999999999999999999999999999887654211 1235679999999999999 888888887
Q ss_pred hhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhcc------ccccceeEEEEechhhhhcCCChHHHHHH
Q 003910 323 KSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKA------LTMSRVTYLVLDEADRMFDLGFEPQIRSI 396 (787)
Q Consensus 323 ~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~------~~l~~i~~lViDEah~m~~~~f~~~i~~i 396 (787)
.. ++++..++|+.........+...++|+|+||++|...+.... ..+..+++|||||||++...++...+...
T Consensus 108 ~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~ 186 (216)
T 3b6e_A 108 KK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRH 186 (216)
T ss_dssp TT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHH
T ss_pred cc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHH
Confidence 64 788888888876655555555679999999999999887643 56788999999999999877666555432
Q ss_pred h-hhc-------------CCCceEEEEecc
Q 003910 397 V-GQI-------------RPDRQTLLFSAT 412 (787)
Q Consensus 397 l-~~~-------------~~~~q~ll~SAT 412 (787)
+ ... .+..++|+||||
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 187 YLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHhcccccccccccCCCCcceEEEeecC
Confidence 2 211 167899999998
No 85
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.88 E-value=1.7e-22 Score=215.67 Aligned_cols=147 Identities=34% Similarity=0.474 Sum_probs=128.4
Q ss_pred ceEEEEecCCCcchHHHHHHhcCCcCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCcc
Q 003910 443 ITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYH 522 (787)
Q Consensus 443 i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~ 522 (787)
+.+.+..+. ...|+..|..++... ..+++||||+++..++.|+..|...++.+..+||+|++.+|..+++.|++|.++
T Consensus 3 v~~~~i~~~-~~~K~~~L~~ll~~~-~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~ 80 (300)
T 3i32_A 3 YEEEAVPAP-VRGRLEVLSDLLYVA-SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVR 80 (300)
T ss_dssp SEEEEEECC-SSSHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCC
T ss_pred eEEEEEECC-HHHHHHHHHHHHHhc-CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCce
Confidence 455555554 467888888887654 367999999999999999999999999999999999999999999999999999
Q ss_pred EEEEehhhhccCCCCCccEEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEccccHHHHHHHHHHHHH
Q 003910 523 VLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIA 592 (787)
Q Consensus 523 VLVaT~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~l~~ 592 (787)
|||||+++++|+|||++++||+||+|+++..|+||+||+||.| +.|.|++|+++.+...+..+.+.+..
T Consensus 81 vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g-~~G~~i~l~~~~e~~~~~~ie~~~~~ 149 (300)
T 3i32_A 81 VLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAG-RGGRVVLLYGPRERRDVEALERAVGR 149 (300)
T ss_dssp EEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC------CEEEEEECSSTHHHHHHHHHHHTC
T ss_pred EEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCC-CCceEEEEeChHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999 67999999999998888887776643
No 86
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.88 E-value=7.2e-22 Score=228.61 Aligned_cols=126 Identities=17% Similarity=0.174 Sum_probs=89.3
Q ss_pred CCCCCcHHHHHHHHH----HHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHH
Q 003910 244 GYEKPTSIQCQALPI----ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETK 319 (787)
Q Consensus 244 g~~~ptp~Q~~ai~~----il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~ 319 (787)
|| .|+|+|.+++.. +..++++++.+|||+|||++|++|++.. ++++||++||++|+.|+.+++.
T Consensus 5 ~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~-----------~~~~~~~~~t~~l~~q~~~~~~ 72 (540)
T 2vl7_A 5 KL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL-----------KKKVLIFTRTHSQLDSIYKNAK 72 (540)
T ss_dssp -----CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH-----------TCEEEEEESCHHHHHHHHHHHG
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC-----------CCcEEEEcCCHHHHHHHHHHHH
Confidence 56 799999998654 5688999999999999999999998754 4679999999999999998887
Q ss_pred HHhhhcCceEEEEECCCCh--------H------------------------HHH---------------HHHhcCCcEE
Q 003910 320 KFAKSHGIRVSAVYGGMSK--------L------------------------DQF---------------KELKAGCEIV 352 (787)
Q Consensus 320 ~~~~~~~i~v~~~~gg~~~--------~------------------------~~~---------------~~l~~~~dII 352 (787)
++ +++++.+.|.... . ..+ ++....++||
T Consensus 73 ~l----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiV 148 (540)
T 2vl7_A 73 LL----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVI 148 (540)
T ss_dssp GG----TCCEEEC---------------------------------------------------------CTTGGGCSEE
T ss_pred hc----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEE
Confidence 74 5555554432210 0 000 1112357999
Q ss_pred EeCHHHHHHHHHhccc-------cccceeEEEEechhhhh
Q 003910 353 IATPGRLIDMLKMKAL-------TMSRVTYLVLDEADRMF 385 (787)
Q Consensus 353 V~Tp~~L~~~l~~~~~-------~l~~i~~lViDEah~m~ 385 (787)
|+||..|++......+ .+....+|||||||+|.
T Consensus 149 V~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 149 AMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp EEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred EEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 9999999985544332 24678899999999983
No 87
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.80 E-value=3.3e-24 Score=210.34 Aligned_cols=148 Identities=34% Similarity=0.502 Sum_probs=132.9
Q ss_pred cceEEEEecCCCcchHHHHHHhcCCcCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCc
Q 003910 442 DITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVY 521 (787)
Q Consensus 442 ~i~q~~~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~ 521 (787)
+|.|.+..++....|...|..++... ..+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|.+
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~ 81 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQP-EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 81 (170)
Confidence 46677666655467888888877653 45699999999999999999999999999999999999999999999999999
Q ss_pred cEEEEehhhhccCCCCCccEEEEecCCCCHHHHHHHhhccCCCCCCCcEEEEEEccccHHHHHHHHHHHH
Q 003910 522 HVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLI 591 (787)
Q Consensus 522 ~VLVaT~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~~l~ 591 (787)
+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.| +.|.+++|+++.+...+..+.+.+.
T Consensus 82 ~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g-~~g~~~~~~~~~~~~~~~~~~~~~~ 150 (170)
T 2yjt_D 82 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAG-RKGTAISLVEAHDHLLLGKVGRYIE 150 (170)
Confidence 99999999999999999999999999999999999999999999 6799999999998888777776553
No 88
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.85 E-value=2.1e-21 Score=206.16 Aligned_cols=156 Identities=19% Similarity=0.116 Sum_probs=128.2
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhc
Q 003910 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (787)
Q Consensus 246 ~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~ 325 (787)
.+|+|+|.++++.++.+++.|++++||+|||+++++++..++.. ...++|||+||++|+.||++++.++....
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-------~~~~~lil~Pt~~L~~q~~~~l~~~~~~~ 184 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-------YEGKILIIVPTTALTTQMADDFVDYRLFS 184 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH-------CSSEEEEECSSHHHHHHHHHHHHHHTSCC
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc-------CCCeEEEEECCHHHHHHHHHHHHHhcccc
Confidence 37999999999999998999999999999999998887776532 13479999999999999999999997655
Q ss_pred CceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHhhhcCCCce
Q 003910 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQ 405 (787)
Q Consensus 326 ~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q 405 (787)
...+..+++|..... .....++|+|+||+.|... ....+..+++|||||||++.. ..+..++..+...++
T Consensus 185 ~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~~~~ 254 (282)
T 1rif_A 185 HAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMF 254 (282)
T ss_dssp GGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTTCCE
T ss_pred cceEEEEeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCCc----ccHHHHHHHhhcCCe
Confidence 677888888876543 1224589999999987543 233567899999999999874 478888898888999
Q ss_pred EEEEeccCcHHHH
Q 003910 406 TLLFSATMPRKVE 418 (787)
Q Consensus 406 ~ll~SAT~~~~v~ 418 (787)
+++||||+++...
T Consensus 255 ~l~lSATp~~~~~ 267 (282)
T 1rif_A 255 KFGLSGSLRDGKA 267 (282)
T ss_dssp EEEECSSCCTTST
T ss_pred EEEEeCCCCCcch
Confidence 9999999986543
No 89
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.85 E-value=4.3e-21 Score=198.30 Aligned_cols=180 Identities=18% Similarity=0.201 Sum_probs=131.3
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHH
Q 003910 236 LMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIY 315 (787)
Q Consensus 236 l~~~l~~~g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~ 315 (787)
+.+.+.......++++|.++++.+..+++++++++||||||+++.++++..+..... .....+|+++|+++|+.|+.
T Consensus 50 ~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~---~~~~~~l~~~p~~~la~q~~ 126 (235)
T 3llm_A 50 LQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR---AAECNIVVTQPRRISAVSVA 126 (235)
T ss_dssp HHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC---GGGCEEEEEESSHHHHHHHH
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC---CCceEEEEeccchHHHHHHH
Confidence 333333344456799999999999999999999999999999999998887765421 23458999999999999998
Q ss_pred HHHHHHhhh-cCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhh-hcCCChH-H
Q 003910 316 LETKKFAKS-HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRM-FDLGFEP-Q 392 (787)
Q Consensus 316 ~~~~~~~~~-~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m-~~~~f~~-~ 392 (787)
+.+...... .+..+.......... ...+++|+|+||++|++++.. .+.++++|||||||++ ++++|.. .
T Consensus 127 ~~~~~~~~~~~~~~~g~~~~~~~~~-----~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~~ 198 (235)
T 3llm_A 127 ERVAFERGEEPGKSCGYSVRFESIL-----PRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLVV 198 (235)
T ss_dssp HHHHHTTTCCTTSSEEEEETTEEEC-----CCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHHH
T ss_pred HHHHHHhccccCceEEEeechhhcc-----CCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHHH
Confidence 887765432 233333222111100 013488999999999999865 4889999999999986 7777764 4
Q ss_pred HHHHhhhcCCCceEEEEeccCcHHHHHHHHHHhCCCe
Q 003910 393 IRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPV 429 (787)
Q Consensus 393 i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~~l~~p~ 429 (787)
+..++.. .++.|+++||||++... +.+.+...|+
T Consensus 199 l~~i~~~-~~~~~~il~SAT~~~~~--~~~~~~~~pv 232 (235)
T 3llm_A 199 LRDVVQA-YPEVRIVLMSATIDTSM--FCEYFFNCPI 232 (235)
T ss_dssp HHHHHHH-CTTSEEEEEECSSCCHH--HHHHTTSCCC
T ss_pred HHHHHhh-CCCCeEEEEecCCCHHH--HHHHcCCCCE
Confidence 4455544 46899999999999776 5655555554
No 90
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.85 E-value=9.9e-20 Score=211.37 Aligned_cols=281 Identities=16% Similarity=0.124 Sum_probs=182.0
Q ss_pred CCcHHHHHHHHH----HHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHh
Q 003910 247 KPTSIQCQALPI----ILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (787)
Q Consensus 247 ~ptp~Q~~ai~~----il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~ 322 (787)
.|+|+|.+++.. +..++++++.+|||+|||++|++|++.. ++++||++||++|+.|+.+++.++.
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~-----------~~~v~i~~pt~~l~~q~~~~~~~l~ 71 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV-----------KPKVLFVVRTHNEFYPIYRDLTKIR 71 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH-----------CSEEEEEESSGGGHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC-----------CCeEEEEcCCHHHHHHHHHHHHHHh
Confidence 689999998764 4578999999999999999999999872 5789999999999999999999887
Q ss_pred hhcCceEEEEECCCC---------------------------------hHHHH------------------HHHhcCCcE
Q 003910 323 KSHGIRVSAVYGGMS---------------------------------KLDQF------------------KELKAGCEI 351 (787)
Q Consensus 323 ~~~~i~v~~~~gg~~---------------------------------~~~~~------------------~~l~~~~dI 351 (787)
...+++++++.|... ....+ +.....++|
T Consensus 72 ~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adI 151 (551)
T 3crv_A 72 EKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADV 151 (551)
T ss_dssp CSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSE
T ss_pred hhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCE
Confidence 766788887776321 11111 223456899
Q ss_pred EEeCHHHHHHHHHhccccc-cceeEEEEechhhhhcCC------------------------------------------
Q 003910 352 VIATPGRLIDMLKMKALTM-SRVTYLVLDEADRMFDLG------------------------------------------ 388 (787)
Q Consensus 352 IV~Tp~~L~~~l~~~~~~l-~~i~~lViDEah~m~~~~------------------------------------------ 388 (787)
||+||..|++...+..+.+ ....+|||||||+|.+ .
T Consensus 152 VV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~ 230 (551)
T 3crv_A 152 IALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLP 230 (551)
T ss_dssp EEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCS
T ss_pred EEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999998765443333 4678999999998865 1
Q ss_pred -------------ChHHHHHH----------------------------h----------------------------hh
Q 003910 389 -------------FEPQIRSI----------------------------V----------------------------GQ 399 (787)
Q Consensus 389 -------------f~~~i~~i----------------------------l----------------------------~~ 399 (787)
+...+..+ + ..
T Consensus 231 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~~ 310 (551)
T 3crv_A 231 DEKYIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNL 310 (551)
T ss_dssp CSSCEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHGG
T ss_pred cccccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHHH
Confidence 00000000 0 00
Q ss_pred cCCC-ceEEEEeccCcHHHHHHHHHHhCCC--eEEE--ecccccccccceEEEEecCC----Ccc-----hHHHHHHhcC
Q 003910 400 IRPD-RQTLLFSATMPRKVEKLAREILSDP--VRVT--VGEVGMANEDITQVVHVIPS----DAE-----KLPWLLEKLP 465 (787)
Q Consensus 400 ~~~~-~q~ll~SAT~~~~v~~l~~~~l~~p--~~i~--v~~~~~~~~~i~q~~~~~~~----~~~-----k~~~L~~~L~ 465 (787)
+... +.+|++|||+.+ ...+.. .++-+ .... .-..+... ..+...+++. ... -...+.+.+.
T Consensus 311 ~~~~~~svIltSaTL~~-~~~~~~-~lGl~~~~~~~~~~~~~~spf--~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~ 386 (551)
T 3crv_A 311 LNDNELSIILMSGTLPP-REYMEK-VWGIKRNMLYLDVEREIQKRV--SGSYECYIGVDVTSKYDMRSDNMWKRYADYLL 386 (551)
T ss_dssp GGCTTCEEEEEESSCCC-HHHHHH-TSCCCSCEEEEEHHHHTTSCC--SCEEEEEEECSCCCCTTTCCHHHHHHHHHHHH
T ss_pred HhccCceEEEEeeCCCc-HHHHHH-HhCCCCccccccceeecCCcC--CCceEEEEeCCCCCccccCCHHHHHHHHHHHH
Confidence 1122 688999999976 333333 33322 2110 00111111 1222222221 111 1233333333
Q ss_pred CcC--CCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEe--hhhhccCCCC---C
Q 003910 466 GMI--DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIAT--DVAARGLDIK---S 538 (787)
Q Consensus 466 ~~~--~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT--~v~~rGlDip---~ 538 (787)
... ..+++|||++++..++.+++. .++++..-.-+++ +..+++.|+...-.||+|| ..+.+|||+| +
T Consensus 387 ~l~~~~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g 460 (551)
T 3crv_A 387 KIYFQAKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRNNDR 460 (551)
T ss_dssp HHHHHCSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTE
T ss_pred HHHHhCCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccccccccCC
Confidence 322 367999999999999999873 3444443333445 3557788854444899998 6899999999 4
Q ss_pred --ccEEEEecCCC
Q 003910 539 --IKSVVNFDIAR 549 (787)
Q Consensus 539 --v~~VI~~d~p~ 549 (787)
++.||+..+|.
T Consensus 461 ~~l~~viI~~lPf 473 (551)
T 3crv_A 461 SLISDVVIVGIPY 473 (551)
T ss_dssp ESEEEEEEESCCC
T ss_pred cceeEEEEEcCCC
Confidence 88999877664
No 91
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.77 E-value=1.5e-17 Score=194.90 Aligned_cols=313 Identities=15% Similarity=0.144 Sum_probs=191.2
Q ss_pred CCcHHHHHHHH----HHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHh
Q 003910 247 KPTSIQCQALP----IILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (787)
Q Consensus 247 ~ptp~Q~~ai~----~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~ 322 (787)
+|+|.|.+.+. ++..++++|+.||||+|||++|++|++.++.. .++++||++||++|+.|+.+++.++.
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~-------~~~kvli~t~T~~l~~Qi~~el~~l~ 75 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE-------RKLKVLYLVRTNSQEEQVIKELRSLS 75 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH-------HTCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh-------cCCeEEEECCCHHHHHHHHHHHHHHh
Confidence 68999999986 45688999999999999999999999998743 25789999999999999999999998
Q ss_pred hhcCceEEEEECCCC----hHH--------------HHHH----------------------------------------
Q 003910 323 KSHGIRVSAVYGGMS----KLD--------------QFKE---------------------------------------- 344 (787)
Q Consensus 323 ~~~~i~v~~~~gg~~----~~~--------------~~~~---------------------------------------- 344 (787)
....++++.+.|+.+ ... .+..
T Consensus 76 ~~~~~~~~~l~gr~~lC~~~~~~~~~~~~~~~~~~~~C~~l~~~~~~~~~~~C~~~~~~~~~gd~~~~l~~~~~die~l~ 155 (620)
T 4a15_A 76 STMKIRAIPMQGRVNMCILYRMVDDLHEINAESLAKFCNMKKREVMAGNEAACPYFNFKIRSDETKRFLFDELPTAEEFY 155 (620)
T ss_dssp HHSCCCEEECCCHHHHCSSHHHHCCCSSCCHHHHHHHHHHHHHHHHTTCTTSSTTCSGGGGCHHHHHHHHHHCCCHHHHH
T ss_pred hccCeEEEEEECCCcccccChhhhhcccchhhhHHHHHHHHHhccccCCCCCCCcccccCcccchhHHhccCCCCHHHHH
Confidence 777777777665421 000 0000
Q ss_pred ----------------HhcCCcEEEeCHHHHHHHHHhcc----c-cccceeEEEEechhhhhc-----------------
Q 003910 345 ----------------LKAGCEIVIATPGRLIDMLKMKA----L-TMSRVTYLVLDEADRMFD----------------- 386 (787)
Q Consensus 345 ----------------l~~~~dIIV~Tp~~L~~~l~~~~----~-~l~~i~~lViDEah~m~~----------------- 386 (787)
....+||||+.+..|++...+.. + ....-.+|||||||+|.+
T Consensus 156 ~~~~~~~~CPy~~aR~~~~~ADvVV~ny~ylld~~~r~~~~~~~~i~p~~~ivI~DEAHNL~d~a~~~~S~~ls~~~l~~ 235 (620)
T 4a15_A 156 DYGERNNVCPYESMKAALPDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPDIGRSIGSFRISVESLNR 235 (620)
T ss_dssp HHHHHTTCCHHHHHHHHGGGCSEEEEEHHHHTCHHHHHHHHHHHTCCGGGEEEEETTGGGHHHHHHHHHCEEEEHHHHHH
T ss_pred HHhhhcCCCccHHHHHHhhcCCEEEeCchhhcCHHHHHHHHHhhccCcCCeEEEEECCCchHHHHHHhhcceeCHHHHHH
Confidence 01238999999988776543321 1 123557999999998732
Q ss_pred ---------CCC------h----HH----HH-----------------------------------HH-------hh---
Q 003910 387 ---------LGF------E----PQ----IR-----------------------------------SI-------VG--- 398 (787)
Q Consensus 387 ---------~~f------~----~~----i~-----------------------------------~i-------l~--- 398 (787)
..+ . .. +. .+ ..
T Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 315 (620)
T 4a15_A 236 ADREAQAYGDPELSQKIHVSDLIEMIRSALQSMVSERCGKGDVRIRFQEFMEYMRIMNKRSEREIRSLLNYLYLFGEYVE 315 (620)
T ss_dssp HHHHHHHTTCCEEETTEEHHHHHHHHHHHHHHHHHHHCSSSCEEECTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHH
Confidence 000 0 00 00 00 00
Q ss_pred -----h--------------------cC------------------------------CCceEEEEeccCcHHHHHHHHH
Q 003910 399 -----Q--------------------IR------------------------------PDRQTLLFSATMPRKVEKLARE 423 (787)
Q Consensus 399 -----~--------------------~~------------------------------~~~q~ll~SAT~~~~v~~l~~~ 423 (787)
. .. ..+.+|++|||+.+ ...+...
T Consensus 316 ~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~l~~~~~~~~il~SaTL~p-~~~~~~~ 394 (620)
T 4a15_A 316 NEKEKVGKVPFSYCSSVASRIIAFSDQDEEKYAAILSPEDGGYMQAACLDPSGILEVLKESKTIHMSGTLDP-FDFYSDI 394 (620)
T ss_dssp HHHHHTTSCCCCHHHHHHHHHHHHHTSCTTTEEEEEECGGGCEEEEEECCTHHHHGGGGGSEEEEEESSCCS-HHHHHHH
T ss_pred hhccccccccccHHHHHHHHHHHHhhcCCCCEEEEEEeCCCcEEEEEECCHHHHHHHHhCCeEEEEccCCCc-HHHHHHH
Confidence 0 00 01245899999976 3444443
Q ss_pred HhCCCeEEEecccccccccceEEEEecCCC--------cchHHHHHHhcCCcC--CCCCEEEEecccccHHHHHHHHHHc
Q 003910 424 ILSDPVRVTVGEVGMANEDITQVVHVIPSD--------AEKLPWLLEKLPGMI--DDGDVLVFASKKTTVDEIESQLAQK 493 (787)
Q Consensus 424 ~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~--------~~k~~~L~~~L~~~~--~~~kvLVF~~s~~~a~~l~~~L~~~ 493 (787)
+.-++..+.+...- ...+ +.+.++..- ..-...+.+.|.... ..+++|||++++..++.+++.|.
T Consensus 395 lGl~~~~~~~~spf-~~~~--~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~l~-- 469 (620)
T 4a15_A 395 TGFEIPFKKIGEIF-PPEN--RYIAYYDGVSSKYDTLDEKELDRMATVIEDIILKVKKNTIVYFPSYSLMDRVENRVS-- 469 (620)
T ss_dssp HCCCCCEEECCCCS-CGGG--EEEEEECCC-------CHHHHHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHTSSCC--
T ss_pred hCCCceeeecCCCC-CHHH--eEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHH--
Confidence 32223333332211 1111 222222111 111222333332221 36789999999999999998886
Q ss_pred CCceeeccCCCCHHHHHHHHHHhhcCCccEEEEeh--hhhccCCCCC--ccEEEEecCCCC-------------------
Q 003910 494 GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD--VAARGLDIKS--IKSVVNFDIARD------------------- 550 (787)
Q Consensus 494 g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~--v~~rGlDip~--v~~VI~~d~p~s------------------- 550 (787)
.+... ..-+++..++..+++.|+ +.-.||++|. .+.+|||+++ ++.||+..+|.-
T Consensus 470 ~~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~ 547 (620)
T 4a15_A 470 FEHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFPRPDAINRSLFDYYERKYGK 547 (620)
T ss_dssp SCCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSC
T ss_pred hcchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCC
Confidence 22222 444566678999999999 8889999985 8999999998 789999887742
Q ss_pred HHH--H--------HHHhhccCCCCCCCcEEEEE
Q 003910 551 MDM--H--------VHRIGRTGRAGDKDGTAYTL 574 (787)
Q Consensus 551 ~~~--y--------~QriGR~gR~G~~~G~~i~l 574 (787)
.-. | .|.+||+-|.-+..|..+++
T Consensus 548 ~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~ll 581 (620)
T 4a15_A 548 GWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVIL 581 (620)
T ss_dssp HHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEE
T ss_pred CchHHhHHHHHHHHHHHhCccccCCCceEEEEEE
Confidence 111 2 59999999976444554443
No 92
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.76 E-value=4.4e-18 Score=175.89 Aligned_cols=139 Identities=22% Similarity=0.149 Sum_probs=110.0
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhc
Q 003910 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (787)
Q Consensus 246 ~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~ 325 (787)
..|+++|.+++..++.++++|++++||+|||++++.++... +..+||++|+++|+.||.+++.++
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-----------~~~~liv~P~~~L~~q~~~~~~~~---- 156 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGIF---- 156 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS-----------CSCEEEEESSHHHHHHHHHHHGGG----
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc-----------CCCEEEEeCCHHHHHHHHHHHHhC----
Confidence 57999999999999999999999999999999987776532 355899999999999999998884
Q ss_pred Cce-EEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHhhhcCCCc
Q 003910 326 GIR-VSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDR 404 (787)
Q Consensus 326 ~i~-v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~ 404 (787)
++. +..+.|+... ..+|+|+||+.+...+.. ....+++|||||||++.+..+. .++..++ ..
T Consensus 157 ~~~~v~~~~g~~~~---------~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~~~~~~----~i~~~~~-~~ 219 (237)
T 2fz4_A 157 GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESYV----QIAQMSI-AP 219 (237)
T ss_dssp CGGGEEEESSSCBC---------CCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCTTTHH----HHHHTCC-CS
T ss_pred CCCeEEEEeCCCCC---------cCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCCChHHH----HHHHhcc-CC
Confidence 677 7766665542 479999999998776542 1346899999999998776443 3444443 67
Q ss_pred eEEEEeccCcHH
Q 003910 405 QTLLFSATMPRK 416 (787)
Q Consensus 405 q~ll~SAT~~~~ 416 (787)
++|+||||+++.
T Consensus 220 ~~l~LSATp~r~ 231 (237)
T 2fz4_A 220 FRLGLTATFERE 231 (237)
T ss_dssp EEEEEEESCC--
T ss_pred EEEEEecCCCCC
Confidence 899999998754
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.74 E-value=3e-18 Score=180.45 Aligned_cols=127 Identities=15% Similarity=0.270 Sum_probs=101.0
Q ss_pred CCcchHHHHHHhcCCcC-CCCCEEEEecccccHHHHHHHHHHc-CCceeeccCCCCHHHHHHHHHHhhcC-Ccc-EEEEe
Q 003910 452 SDAEKLPWLLEKLPGMI-DDGDVLVFASKKTTVDEIESQLAQK-GFKAAALHGDKDQASRMEILQKFKSG-VYH-VLIAT 527 (787)
Q Consensus 452 ~~~~k~~~L~~~L~~~~-~~~kvLVF~~s~~~a~~l~~~L~~~-g~~v~~lhg~~~~~eR~~~l~~F~~G-~~~-VLVaT 527 (787)
....|+..|.++|.... ...++||||+++..++.|...|... ++.+..+||++++.+|..+++.|+++ .++ +||+|
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st 172 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 172 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeh
Confidence 35678888888877653 4569999999999999999999885 99999999999999999999999998 677 78899
Q ss_pred hhhhccCCCCCccEEEEecCCCCHHHHHHHhhccCCCCCC-CcEEEEEEccc
Q 003910 528 DVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDK-DGTAYTLVTQK 578 (787)
Q Consensus 528 ~v~~rGlDip~v~~VI~~d~p~s~~~y~QriGR~gR~G~~-~G~~i~l~~~~ 578 (787)
+++++|||++.+++||+||+|||+..|+||+||++|.|++ ...+|.|++..
T Consensus 173 ~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 173 KAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp CTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred hhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 9999999999999999999999999999999999999943 34567788765
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.83 E-value=5.6e-09 Score=122.08 Aligned_cols=146 Identities=21% Similarity=0.255 Sum_probs=94.5
Q ss_pred cHHHHHHHHHHHcCCCEEEEccCCCchh--HHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcC
Q 003910 249 TSIQCQALPIILSGRDIIGIAKTGSGKT--AAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (787)
Q Consensus 249 tp~Q~~ai~~il~grdvii~a~TGsGKT--la~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~ 326 (787)
++.|+++++.++.++.+++.+++|+||| ++++++++..+.. ..+.++++++||..+|.++.+.+..++...+
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~------~~~~~vll~APTg~AA~~L~e~~~~~~~~l~ 224 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD------GERCRIRLAAPTGKAAARLTESLGKALRQLP 224 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS------SCCCCEEEEBSSHHHHHHHHHHHTHHHHHSS
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh------cCCCeEEEEeCChhHHHHHHHHHHHHHhcCC
Confidence 7899999999999999999999999999 5566666554311 2356799999999999999998888766554
Q ss_pred ceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHhhhcCCCceE
Q 003910 327 IRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQT 406 (787)
Q Consensus 327 i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ 406 (787)
+..... ..... ....+ ..++-.+|+.. . +.........+++||||||+ |++ ...+..++..++...|+
T Consensus 225 l~~~~~-~~~~~--~~~Ti---h~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAs-ml~---~~~~~~Ll~~l~~~~~l 292 (608)
T 1w36_D 225 LTDEQK-KRIPE--DASTL---HRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEAS-MID---LPMMSRLIDALPDHARV 292 (608)
T ss_dssp CCSCCC-CSCSC--CCBTT---TSCC-------------CTTSCCSCSEEEECSGG-GCB---HHHHHHHHHTCCTTCEE
T ss_pred CCHHHH-hccch--hhhhh---HhhhccCCCch-H-HHhccCCCCCCCEEEEechh-hCC---HHHHHHHHHhCCCCCEE
Confidence 332111 00000 00000 11222233221 1 11111222378999999999 555 56778889999989999
Q ss_pred EEEecc
Q 003910 407 LLFSAT 412 (787)
Q Consensus 407 ll~SAT 412 (787)
|++.-+
T Consensus 293 iLvGD~ 298 (608)
T 1w36_D 293 IFLGDR 298 (608)
T ss_dssp EEEECT
T ss_pred EEEcch
Confidence 998766
No 95
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=98.28 E-value=1.5e-06 Score=92.05 Aligned_cols=124 Identities=10% Similarity=0.095 Sum_probs=90.2
Q ss_pred CcchHHHHHHhcCCcCCC-CCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhh
Q 003910 453 DAEKLPWLLEKLPGMIDD-GDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAA 531 (787)
Q Consensus 453 ~~~k~~~L~~~L~~~~~~-~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~ 531 (787)
...|+..|-.+|...... .+||||++.....+.|..+|...++.+..+.|.....++. . .+..+.|.+.|...+
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~k-~----~~~~~~i~Lltsag~ 181 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAA-A----NDFSCTVHLFSSEGI 181 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCC
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhhh-c----ccCCceEEEEECCCC
Confidence 467887776666554433 4999999999999999999999999999999986553221 1 244555655576666
Q ss_pred ccCC-----CCCccEEEEecCCCCHHHH-HHHhhccCCCC---CCCcEEEEEEccccHH
Q 003910 532 RGLD-----IKSIKSVVNFDIARDMDMH-VHRIGRTGRAG---DKDGTAYTLVTQKEAR 581 (787)
Q Consensus 532 rGlD-----ip~v~~VI~~d~p~s~~~y-~QriGR~gR~G---~~~G~~i~l~~~~d~~ 581 (787)
-|+| +..+++||.||..||+..- +|++-|++|.| .+...+|.|++..-.+
T Consensus 182 ~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiE 240 (328)
T 3hgt_A 182 NFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSID 240 (328)
T ss_dssp CTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHH
T ss_pred CCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHH
Confidence 6665 7889999999999999886 99999999984 2456788888876544
No 96
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.08 E-value=2.3e-05 Score=91.88 Aligned_cols=70 Identities=19% Similarity=0.232 Sum_probs=56.3
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003910 245 YEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (787)
Q Consensus 245 ~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~ 321 (787)
+..+++.|.+++..++...-++|.+|+|+|||.+ +..++.++... .+.++|+++||...+.++.+.+.+.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~-~~~~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT-SATIVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHH-HHHHHHHHHTS------SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHH-HHHHHHHHHHc------CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 4578999999999999888889999999999986 44555555432 3567999999999999988777654
No 97
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.05 E-value=7.8e-06 Score=96.30 Aligned_cols=68 Identities=24% Similarity=0.296 Sum_probs=54.5
Q ss_pred CCCcHHHHHHHHHHHcCCC-EEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003910 246 EKPTSIQCQALPIILSGRD-IIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (787)
Q Consensus 246 ~~ptp~Q~~ai~~il~grd-vii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~ 321 (787)
..+.+-|.+|+..++..++ .||.||+|+|||.+ ++.++.+++.. +.++||++||...+.++.+.+...
T Consensus 188 ~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~t-i~~~I~~l~~~-------~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTT-VVEIILQAVKQ-------GLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHH-HHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHH-HHHHHHHHHhC-------CCeEEEEcCchHHHHHHHHHHHhc
Confidence 4588999999999988775 68899999999987 45555555543 567999999999999998777543
No 98
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.97 E-value=1.8e-05 Score=91.60 Aligned_cols=124 Identities=23% Similarity=0.275 Sum_probs=82.8
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhc
Q 003910 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (787)
Q Consensus 246 ~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~ 325 (787)
..+++.|.+++..++..+.+++.++.|+|||.+ +..++..+.. .+..+++++||...+..+.+.+
T Consensus 188 ~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~-i~~l~~~l~~-------~g~~Vl~~ApT~~Aa~~L~e~~------- 252 (574)
T 3e1s_A 188 KGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTT-TKAVADLAES-------LGLEVGLCAPTGKAARRLGEVT------- 252 (574)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHH-HHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHH-------
T ss_pred CCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHH-HHHHHHHHHh-------cCCeEEEecCcHHHHHHhHhhh-------
Confidence 468999999999999999999999999999975 3444444422 3566899999999887765433
Q ss_pred CceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHH----HHhccccccceeEEEEechhhhhcCCChHHHHHHhhhcC
Q 003910 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDM----LKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIR 401 (787)
Q Consensus 326 ~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~----l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~~ 401 (787)
+.... |..+|+.. +.........+++||||||+.+- ...+..++..++
T Consensus 253 ~~~a~------------------------Tih~ll~~~~~~~~~~~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~~ 304 (574)
T 3e1s_A 253 GRTAS------------------------TVHRLLGYGPQGFRHNHLEPAPYDLLIVDEVSMMG----DALMLSLLAAVP 304 (574)
T ss_dssp TSCEE------------------------EHHHHTTEETTEESCSSSSCCSCSEEEECCGGGCC----HHHHHHHHTTSC
T ss_pred cccHH------------------------HHHHHHcCCcchhhhhhcccccCCEEEEcCccCCC----HHHHHHHHHhCc
Confidence 21111 11111100 01111233467899999999743 446777788887
Q ss_pred CCceEEEEecc
Q 003910 402 PDRQTLLFSAT 412 (787)
Q Consensus 402 ~~~q~ll~SAT 412 (787)
...+++++.-+
T Consensus 305 ~~~~lilvGD~ 315 (574)
T 3e1s_A 305 PGARVLLVGDT 315 (574)
T ss_dssp TTCEEEEEECT
T ss_pred CCCEEEEEecc
Confidence 77788877554
No 99
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.96 E-value=2.3e-05 Score=88.41 Aligned_cols=136 Identities=13% Similarity=0.158 Sum_probs=80.5
Q ss_pred HCCCCCCcHHHHHHHHHHHcC-----CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHH
Q 003910 242 KQGYEKPTSIQCQALPIILSG-----RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYL 316 (787)
Q Consensus 242 ~~g~~~ptp~Q~~ai~~il~g-----rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~ 316 (787)
...|..|++-|.+++..++.. ..+++.|+.|+|||.+ +..++.++.... ...+++++||...|..+.+
T Consensus 20 p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~l-l~~~~~~l~~~~------~~~il~~a~T~~Aa~~l~~ 92 (459)
T 3upu_A 20 HMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTL-TKFIIEALISTG------ETGIILAAPTHAAKKILSK 92 (459)
T ss_dssp -CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHH-HHHHHHHHHHTT------CCCEEEEESSHHHHHHHHH
T ss_pred CCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHH-HHHHHHHHHhcC------CceEEEecCcHHHHHHHHh
Confidence 345788999999999977543 3899999999999975 455566664431 1358999999888876654
Q ss_pred HHHHHhhhcCceEEEEECCCChHHHHHHHh----cCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHH
Q 003910 317 ETKKFAKSHGIRVSAVYGGMSKLDQFKELK----AGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQ 392 (787)
Q Consensus 317 ~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~----~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~ 392 (787)
.+ ++.+..++ .+..+. .....+.. .....+..+++|||||++.+- ..+
T Consensus 93 ~~-------~~~~~T~h-------~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~iiiDE~~~~~----~~~ 144 (459)
T 3upu_A 93 LS-------GKEASTIH-------SILKINPVTYEENVLFEQ----------KEVPDLAKCRVLICDEVSMYD----RKL 144 (459)
T ss_dssp HH-------SSCEEEHH-------HHHTEEEEECSSCEEEEE----------CSCCCCSSCSEEEESCGGGCC----HHH
T ss_pred hh-------ccchhhHH-------HHhccCcccccccchhcc----------cccccccCCCEEEEECchhCC----HHH
Confidence 43 12111110 000000 00000100 112245678999999999643 335
Q ss_pred HHHHhhhcCCCceEEEEecc
Q 003910 393 IRSIVGQIRPDRQTLLFSAT 412 (787)
Q Consensus 393 i~~il~~~~~~~q~ll~SAT 412 (787)
+..++..+....+++++.-+
T Consensus 145 ~~~l~~~~~~~~~~~~vGD~ 164 (459)
T 3upu_A 145 FKILLSTIPPWCTIIGIGDN 164 (459)
T ss_dssp HHHHHHHSCTTCEEEEEECT
T ss_pred HHHHHHhccCCCEEEEECCH
Confidence 55555555555666665543
No 100
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.96 E-value=3.3e-05 Score=92.68 Aligned_cols=70 Identities=17% Similarity=0.285 Sum_probs=56.0
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003910 245 YEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (787)
Q Consensus 245 ~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~ 321 (787)
+..+++.|.+|+..++...-++|.|+.|+|||.+ +..++.++... .+.++|+++||...+.++.+.+.+.
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~-i~~~i~~l~~~------~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVT-SATIVYHLSKI------HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHH-HHHHHHHHHHH------HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHH-HHHHHHHHHhC------CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 4578999999999998877789999999999986 44455555431 2456999999999999998887764
No 101
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.94 E-value=0.00016 Score=84.91 Aligned_cols=72 Identities=17% Similarity=0.165 Sum_probs=54.9
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhh
Q 003910 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (787)
Q Consensus 246 ~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~ 323 (787)
..+++-|.+++. .....++|.|+.|||||.+ ++.-+.+++..... ....+|+|++|+..+.++.+.+.++..
T Consensus 8 ~~Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~-l~~ri~~l~~~~~~---~~~~iL~ltft~~aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 8 DSLNDKQREAVA--APRSNLLVLAGAGSGKTRV-LVHRIAWLMSVENC---SPYSIMAVTFTNKAAAEMRHRIGQLMG 79 (647)
T ss_dssp TTCCHHHHHHHT--CCSSCEEEEECTTSCHHHH-HHHHHHHHHHTSCC---CGGGEEEEESSHHHHHHHHHHHHHHHC
T ss_pred hcCCHHHHHHHh--CCCCCEEEEECCCCCHHHH-HHHHHHHHHHhCCC---ChhhEEEEeccHHHHHHHHHHHHHHhc
Confidence 578999999997 3357899999999999987 44445555543211 123589999999999999999988754
No 102
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.92 E-value=4.8e-05 Score=91.18 Aligned_cols=70 Identities=19% Similarity=0.232 Sum_probs=56.2
Q ss_pred CCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHH
Q 003910 245 YEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKF 321 (787)
Q Consensus 245 ~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~ 321 (787)
...+++.|.+|+..++...-+++.|++|+|||.+ +..++.++... .+.++|+++||...+.++.+.+.+.
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~t-i~~~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT-SATIVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHH-HHHHHHHHHTT------CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHH-HHHHHHHHHHc------CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 4568999999999999888889999999999986 45555665442 3457999999999999988777653
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.12 E-value=0.0037 Score=68.21 Aligned_cols=145 Identities=14% Similarity=0.112 Sum_probs=86.9
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcC
Q 003910 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (787)
Q Consensus 247 ~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~ 326 (787)
.|+|+|...+..+...+-+++..+-+.|||.+....++..++.. .+..+++++||+..|..+.+.++.+.....
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~------~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P 236 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN------KDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSS------SSCEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhC------CCCeEEEEeCCHHHHHHHHHHHHHHHHhCh
Confidence 68999999998876557789999999999987666555544332 356799999999999988888888876433
Q ss_pred --ceEEEEECCCChHHHHHHHhcCCcEEEeC--HHHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHhhhcC-
Q 003910 327 --IRVSAVYGGMSKLDQFKELKAGCEIVIAT--PGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIR- 401 (787)
Q Consensus 327 --i~v~~~~gg~~~~~~~~~l~~~~dIIV~T--p~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~~- 401 (787)
++.......... ..+..|..|.+.+ |..+. -..+.++|+||+|.+.+ +...+..+...+.
T Consensus 237 ~ll~~~~~~~~~~~----I~f~nGs~i~~lsa~~~slr---------G~~~~~viiDE~a~~~~--~~el~~al~~~ls~ 301 (385)
T 2o0j_A 237 DFLQPGIVEWNKGS----IELDNGSSIGAYASSPDAVR---------GNSFAMIYIEDCAFIPN--FHDSWLAIQPVISS 301 (385)
T ss_dssp TTTSCCEEEECSSE----EEETTSCEEEEEECSHHHHH---------TSCCSEEEEESGGGSTT--HHHHHHHHHHHHHS
T ss_pred HhhhhhhccCCccE----EEeCCCCEEEEEECCCCCcc---------CCCCCEEEechhhhcCC--CHHHHHHHHHHhhc
Confidence 111000000000 0012344444433 32221 23467899999998654 1223333333322
Q ss_pred -CCceEEEEecc
Q 003910 402 -PDRQTLLFSAT 412 (787)
Q Consensus 402 -~~~q~ll~SAT 412 (787)
++.+++++|..
T Consensus 302 ~~~~kiiiiSTP 313 (385)
T 2o0j_A 302 GRRSKIIITTTP 313 (385)
T ss_dssp TTCCEEEEEECC
T ss_pred CCCCcEEEEeCC
Confidence 34555555443
No 104
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.87 E-value=0.0087 Score=69.45 Aligned_cols=145 Identities=14% Similarity=0.118 Sum_probs=87.9
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcC
Q 003910 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHG 326 (787)
Q Consensus 247 ~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~ 326 (787)
.|+|+|...+..+...+-+++..+-++|||.+....++..++.. .+..+++++|++..|..+.+.++.+.....
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~------~~~~i~~va~t~~qA~~~~~~i~~~i~~~p 236 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN------KDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS------SSCEEEEEESSHHHHHHHHHHHHHHHTTSC
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC------CCCeEEEEECCHHHHHHHHHHHHHHHHhCh
Confidence 68999999998775567899999999999987665555555432 245799999999999999988888876443
Q ss_pred --ceEEEEECCCChHHHHHHHhcCCcEEEe--CHHHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHhhhcC-
Q 003910 327 --IRVSAVYGGMSKLDQFKELKAGCEIVIA--TPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIR- 401 (787)
Q Consensus 327 --i~v~~~~gg~~~~~~~~~l~~~~dIIV~--Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~~- 401 (787)
+........... + .+..|..|.+. .|..+.- ..+.++|+||+|.+.+. ...+..+...+.
T Consensus 237 ~~~~~~~~~~~~~~---i-~~~nGs~i~~~s~~~~~lrG---------~~~~~~iiDE~~~~~~~--~~l~~~~~~~l~~ 301 (592)
T 3cpe_A 237 DFLQPGIVEWNKGS---I-ELDNGSSIGAYASSPDAVRG---------NSFAMIYIEDCAFIPNF--HDSWLAIQPVISS 301 (592)
T ss_dssp TTTSCCEEEECSSE---E-EETTSCEEEEEECCHHHHHH---------SCCSEEEEETGGGCTTH--HHHHHHHHHHHSS
T ss_pred HhhccccccCCccE---E-EecCCCEEEEEeCCCCCccC---------CCcceEEEehhccCCch--hHHHHHHHHHhcc
Confidence 111000000000 0 11234444433 2443322 14678999999986542 223333333332
Q ss_pred -CCceEEEEecc
Q 003910 402 -PDRQTLLFSAT 412 (787)
Q Consensus 402 -~~~q~ll~SAT 412 (787)
++.+++++|..
T Consensus 302 ~~~~~ii~isTP 313 (592)
T 3cpe_A 302 GRRSKIIITTTP 313 (592)
T ss_dssp SSCCEEEEEECC
T ss_pred CCCceEEEEeCC
Confidence 34555555433
No 105
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.17 E-value=0.018 Score=68.37 Aligned_cols=110 Identities=15% Similarity=0.142 Sum_probs=72.4
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhc
Q 003910 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (787)
Q Consensus 246 ~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~ 325 (787)
..++|-|.+++.. ....++|.|..|||||.+ ++.-+.+++.... .....+|+|+.|+..|.++.+.+.++....
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~v-L~~ri~~ll~~~~---~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~ 83 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRV-LTHRIAYLMAEKH---VAPWNILAITFTNKAAREMRERVQSLLGGA 83 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHH-HHHHHHHHHHTTC---CCGGGEEEEESSHHHHHHHHHHHHHHHGGG
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHH-HHHHHHHHHHhcC---CCHHHeEEEeccHHHHHHHHHHHHHHhccc
Confidence 5789999999875 356899999999999987 4444555554311 122458999999999999998888875321
Q ss_pred CceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccc-cc-cceeEEEEechhh
Q 003910 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKAL-TM-SRVTYLVLDEADR 383 (787)
Q Consensus 326 ~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~-~l-~~i~~lViDEah~ 383 (787)
...+-|+|...|...+-+... .+ -.-.+.|+|+.+.
T Consensus 84 ----------------------~~~~~v~Tfhs~~~~ilr~~~~~~g~~~~f~i~d~~d~ 121 (724)
T 1pjr_A 84 ----------------------AEDVWISTFHSMCVRILRRDIDRIGINRNFSILDPTDQ 121 (724)
T ss_dssp ----------------------GTTSEEEEHHHHHHHHHHHHGGGGTCCTTCEECCHHHH
T ss_pred ----------------------ccCcEEeeHHHHHHHHHHHHHHHhCCCCCCEECCHHHH
Confidence 023567787777544332211 11 0123567787763
No 106
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.08 E-value=0.014 Score=56.28 Aligned_cols=30 Identities=30% Similarity=0.354 Sum_probs=22.7
Q ss_pred cHHHHHHHHHHH---------cCCCEEEEccCCCchhHH
Q 003910 249 TSIQCQALPIIL---------SGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 249 tp~Q~~ai~~il---------~grdvii~a~TGsGKTla 278 (787)
.+.|.+++..+. .++.+++++|+|+|||..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL 54 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHL 54 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHH
Confidence 456666665554 467899999999999974
No 107
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.93 E-value=0.0097 Score=58.42 Aligned_cols=39 Identities=15% Similarity=0.068 Sum_probs=26.3
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcH
Q 003910 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTR 308 (787)
Q Consensus 262 grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~Ptr 308 (787)
|+=.+++++||+|||.+.+ -++.... ..+.+++|+.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll-~~a~r~~-------~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELI-RRIRRAK-------IAKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHH-HHHHHHH-------HTTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHH-HHHHHHH-------HCCCEEEEEEecc
Confidence 4457889999999998744 3333332 2356789998873
No 108
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.76 E-value=0.024 Score=55.14 Aligned_cols=40 Identities=18% Similarity=0.114 Sum_probs=26.0
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcH
Q 003910 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTR 308 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~Ptr 308 (787)
.++-.++.+++|+|||...+ -++..+.. .+.+++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll-~~~~~~~~-------~g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELL-SFVEIYKL-------GKKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHH-HHHHHHHH-------TTCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHH-HHHHHHHH-------CCCeEEEEeecc
Confidence 35567899999999998633 33333322 245688888873
No 109
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.75 E-value=0.02 Score=63.25 Aligned_cols=107 Identities=17% Similarity=0.146 Sum_probs=63.1
Q ss_pred CEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHH
Q 003910 264 DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK 343 (787)
Q Consensus 264 dvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~ 343 (787)
-.++.|+.|+|||.. +..++.. ...+|++||++++..|.+.+.+. +..
T Consensus 163 v~~I~G~aGsGKTt~-----I~~~~~~--------~~~lVlTpT~~aa~~l~~kl~~~----~~~--------------- 210 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKE-----ILSRVNF--------EEDLILVPGRQAAEMIRRRANAS----GII--------------- 210 (446)
T ss_dssp EEEEEECTTSCHHHH-----HHHHCCT--------TTCEEEESCHHHHHHHHHHHTTT----SCC---------------
T ss_pred EEEEEcCCCCCHHHH-----HHHHhcc--------CCeEEEeCCHHHHHHHHHHhhhc----Ccc---------------
Confidence 467899999999975 2222221 12599999999998887665332 110
Q ss_pred HHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEecc
Q 003910 344 ELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSAT 412 (787)
Q Consensus 344 ~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT 412 (787)
....+-|.|.+.++. .......-.+++||||||-. ++. ..+..++..+++ .+++++.-+
T Consensus 211 ---~~~~~~V~T~dsfL~--~~~~~~~~~~d~liiDE~sm-~~~---~~l~~l~~~~~~-~~vilvGD~ 269 (446)
T 3vkw_A 211 ---VATKDNVRTVDSFLM--NYGKGARCQFKRLFIDEGLM-LHT---GCVNFLVEMSLC-DIAYVYGDT 269 (446)
T ss_dssp ---CCCTTTEEEHHHHHH--TTTSSCCCCCSEEEEETGGG-SCH---HHHHHHHHHTTC-SEEEEEECT
T ss_pred ---ccccceEEEeHHhhc--CCCCCCCCcCCEEEEeCccc-CCH---HHHHHHHHhCCC-CEEEEecCc
Confidence 011234677766543 21122222478999999984 332 344444444444 667776655
No 110
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.74 E-value=0.0069 Score=60.29 Aligned_cols=40 Identities=13% Similarity=0.059 Sum_probs=26.3
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHH
Q 003910 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRE 309 (787)
Q Consensus 262 grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~Ptre 309 (787)
|+=.++++++|+|||.+.+--+..+. ..+.+++|+.|...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~--------~~g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQ--------FAKQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHH--------HTTCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH--------HCCCEEEEEEeccC
Confidence 34456899999999987444444333 33567899988753
No 111
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=95.63 E-value=0.014 Score=68.84 Aligned_cols=71 Identities=18% Similarity=0.113 Sum_probs=52.5
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhh
Q 003910 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (787)
Q Consensus 247 ~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~ 323 (787)
.++|-|.+++.. ....++|.|..|||||.+ ++.-+.+++.... .....+|+|+.|+..|.++.+.+.+...
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~-l~~ri~~ll~~~~---~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRV-ITNKIAHLIRGCG---YQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHH-HHHHHHHHHHHHC---CCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHH-HHHHHHHHHHhcC---CCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 478999999875 357899999999999987 4444444443211 1234589999999999999988887753
No 112
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=95.28 E-value=0.033 Score=64.63 Aligned_cols=112 Identities=23% Similarity=0.349 Sum_probs=74.4
Q ss_pred CCcHHHHHHHHHHHcC--CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhh
Q 003910 247 KPTSIQCQALPIILSG--RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKS 324 (787)
Q Consensus 247 ~ptp~Q~~ai~~il~g--rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~ 324 (787)
.+|.-|.+++..++.- ...++.|+-|.|||.+.-+ ++..+. ..++|.+|+.+-+..+ ..++..
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~-~~a~~~----------~~~~vtAP~~~a~~~l----~~~~~~ 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQ-LISRIA----------GRAIVTAPAKASTDVL----AQFAGE 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHH-HHHHSS----------SCEEEECSSCCSCHHH----HHHHGG
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHH-HHHHHH----------hCcEEECCCHHHHHHH----HHHhhC
Confidence 6899999999988863 3578899999999965333 233331 1269999998877533 333221
Q ss_pred cCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHhhhcCCCc
Q 003910 325 HGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDR 404 (787)
Q Consensus 325 ~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~ 404 (787)
.|-+..|..+.. .+..+++||||||=.|- .+.+..++...
T Consensus 240 -------------------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaIp----~pll~~ll~~~---- 279 (671)
T 2zpa_A 240 -------------------------KFRFIAPDALLA-------SDEQADWLVVDEAAAIP----APLLHQLVSRF---- 279 (671)
T ss_dssp -------------------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGSC----HHHHHHHHTTS----
T ss_pred -------------------------CeEEeCchhhhh-------CcccCCEEEEEchhcCC----HHHHHHHHhhC----
Confidence 133456655432 23468999999999754 56777777643
Q ss_pred eEEEEeccC
Q 003910 405 QTLLFSATM 413 (787)
Q Consensus 405 q~ll~SAT~ 413 (787)
..++||.|+
T Consensus 280 ~~v~~~tTv 288 (671)
T 2zpa_A 280 PRTLLTTTV 288 (671)
T ss_dssp SEEEEEEEB
T ss_pred CeEEEEecC
Confidence 257888886
No 113
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.21 E-value=0.014 Score=58.63 Aligned_cols=91 Identities=10% Similarity=0.124 Sum_probs=49.7
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHH
Q 003910 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~ 340 (787)
.|.-+++.++||+|||.+. +-++..+. ..+.+++++.|...- . ....++...++..
T Consensus 11 ~G~i~litG~mGsGKTT~l-l~~~~r~~-------~~g~kVli~~~~~d~--r---~~~~i~srlG~~~----------- 66 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAEL-IRRLHRLE-------YADVKYLVFKPKIDT--R---SIRNIQSRTGTSL----------- 66 (223)
T ss_dssp CCEEEEEECSTTSCHHHHH-HHHHHHHH-------HTTCCEEEEEECCCG--G---GCSSCCCCCCCSS-----------
T ss_pred CcEEEEEECCCCCcHHHHH-HHHHHHHH-------hcCCEEEEEEeccCc--h---HHHHHHHhcCCCc-----------
Confidence 3456788999999999874 33344332 235567888765310 0 0001111112111
Q ss_pred HHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhh
Q 003910 341 QFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRM 384 (787)
Q Consensus 341 ~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m 384 (787)
..+.+.+...++..+... ..-..+++|||||++.+
T Consensus 67 --------~~~~~~~~~~i~~~i~~~-~~~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 67 --------PSVEVESAPEILNYIMSN-SFNDETKVIGIDEVQFF 101 (223)
T ss_dssp --------CCEEESSTHHHHHHHHST-TSCTTCCEEEECSGGGS
T ss_pred --------cccccCCHHHHHHHHHHH-hhCCCCCEEEEecCccC
Confidence 123345666666665432 12345889999999974
No 114
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.11 E-value=0.12 Score=54.79 Aligned_cols=26 Identities=12% Similarity=0.015 Sum_probs=19.3
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHh
Q 003910 262 GRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (787)
Q Consensus 262 grdvii~a~TGsGKTla~llp~l~~l~ 288 (787)
+.++++.+++|+|||++ +-.++..+.
T Consensus 45 ~~~lli~GpPGTGKT~~-v~~v~~~L~ 70 (318)
T 3te6_A 45 NKLFYITNADDSTKFQL-VNDVMDELI 70 (318)
T ss_dssp CCEEEEECCCSHHHHHH-HHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHHH
Confidence 35799999999999986 444455553
No 115
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.90 E-value=0.083 Score=55.93 Aligned_cols=17 Identities=29% Similarity=0.284 Sum_probs=14.9
Q ss_pred CCCEEEEccCCCchhHH
Q 003910 262 GRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 262 grdvii~a~TGsGKTla 278 (787)
+..+++++|+|+|||..
T Consensus 37 ~~~lll~G~~GtGKT~l 53 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHL 53 (324)
T ss_dssp CSSEEEECSSSSSHHHH
T ss_pred CCeEEEECCCCCcHHHH
Confidence 35899999999999975
No 116
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.79 E-value=0.33 Score=49.79 Aligned_cols=16 Identities=31% Similarity=0.243 Sum_probs=14.3
Q ss_pred CCEEEEccCCCchhHH
Q 003910 263 RDIIGIAKTGSGKTAA 278 (787)
Q Consensus 263 rdvii~a~TGsGKTla 278 (787)
+.+++++|+|+|||..
T Consensus 65 ~~vLl~G~~GtGKT~l 80 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTAL 80 (272)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCcHHHH
Confidence 4799999999999975
No 117
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.71 E-value=0.12 Score=50.56 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=17.7
Q ss_pred CCEEEEccCCCchhHHHHHHHHHHH
Q 003910 263 RDIIGIAKTGSGKTAAFVLPMIVHI 287 (787)
Q Consensus 263 rdvii~a~TGsGKTla~llp~l~~l 287 (787)
+.+++++++|+|||.. +..+...+
T Consensus 55 ~~~~l~G~~GtGKT~l-a~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYL-LAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHH-HHHHHHHH
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHH
Confidence 7899999999999975 33334443
No 118
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.69 E-value=0.18 Score=47.77 Aligned_cols=17 Identities=35% Similarity=0.429 Sum_probs=14.8
Q ss_pred CCCEEEEccCCCchhHH
Q 003910 262 GRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 262 grdvii~a~TGsGKTla 278 (787)
.+.+++.+++|+|||..
T Consensus 43 ~~~vll~G~~G~GKT~l 59 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAI 59 (187)
T ss_dssp SCEEEEESCGGGCHHHH
T ss_pred CCceEEECCCCCCHHHH
Confidence 46799999999999975
No 119
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.65 E-value=0.27 Score=48.09 Aligned_cols=139 Identities=16% Similarity=0.100 Sum_probs=71.3
Q ss_pred CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHH-HHHHHHHHHHHHhhhcCceEEEEECCCChHH-
Q 003910 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRE-LAHQIYLETKKFAKSHGIRVSAVYGGMSKLD- 340 (787)
Q Consensus 263 rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~Ptre-La~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~- 340 (787)
-.+++...+|.|||.+++-.++..+ ..|.+|+|+.-.+. .-.--.+.+.++ ++.+...--|-....
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~--------g~G~rV~~vQF~Kg~~~~gE~~~l~~L----~v~~~~~g~gf~~~~~ 96 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAV--------GHGKNVGVVQFIKGTWPNGERNLLEPH----GVEFQVMATGFTWETQ 96 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHH--------HTTCCEEEEESSCCSSCCHHHHHHGGG----TCEEEECCTTCCCCGG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH--------HCCCeEEEEEeeCCCCCccHHHHHHhC----CcEEEEcccccccCCC
Confidence 4788899999999998777777666 34677888732110 000000112222 333221111110000
Q ss_pred HHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCC--hHHHHHHhhhcCCCceEEEEeccCcHHHH
Q 003910 341 QFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGF--EPQIRSIVGQIRPDRQTLLFSATMPRKVE 418 (787)
Q Consensus 341 ~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f--~~~i~~il~~~~~~~q~ll~SAT~~~~v~ 418 (787)
....-.. .....+..+. ..+.-..+++|||||+-..+..++ .+.+..++...+....+|+.+--.|+.+.
T Consensus 97 ~~~~~~~-------~a~~~l~~a~-~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~ 168 (196)
T 1g5t_A 97 NREADTA-------ACMAVWQHGK-RMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDIL 168 (196)
T ss_dssp GHHHHHH-------HHHHHHHHHH-HHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHH
T ss_pred CcHHHHH-------HHHHHHHHHH-HHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHH
Confidence 0000000 0011111111 122235789999999987666554 35667777766666666666666777766
Q ss_pred HHH
Q 003910 419 KLA 421 (787)
Q Consensus 419 ~l~ 421 (787)
+++
T Consensus 169 e~A 171 (196)
T 1g5t_A 169 DLA 171 (196)
T ss_dssp HHC
T ss_pred HhC
Confidence 554
No 120
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.55 E-value=0.047 Score=54.83 Aligned_cols=40 Identities=10% Similarity=0.004 Sum_probs=28.1
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcH
Q 003910 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTR 308 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~Ptr 308 (787)
.|+=.+++++||+|||.+.+--+..+. ..+.+++|+-|..
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~--------~~g~kvli~kp~~ 57 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQ--------IAQYKCLVIKYAK 57 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH--------TTTCCEEEEEETT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHH--------HCCCeEEEEeecC
Confidence 456678899999999987444444443 3466788888764
No 121
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.54 E-value=0.093 Score=56.52 Aligned_cols=17 Identities=35% Similarity=0.415 Sum_probs=15.0
Q ss_pred CCCEEEEccCCCchhHH
Q 003910 262 GRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 262 grdvii~a~TGsGKTla 278 (787)
.+.+++++|+|+|||..
T Consensus 44 ~~~vll~G~~G~GKT~l 60 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAV 60 (387)
T ss_dssp CCCEEECBCTTSSHHHH
T ss_pred CCcEEEECCCCCCHHHH
Confidence 46899999999999975
No 122
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.47 E-value=0.019 Score=53.81 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=16.0
Q ss_pred cCCCEEEEccCCCchhHH
Q 003910 261 SGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla 278 (787)
.++.+++++++|+|||..
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 678899999999999964
No 123
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.44 E-value=0.14 Score=56.57 Aligned_cols=132 Identities=18% Similarity=0.242 Sum_probs=72.7
Q ss_pred CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEE-EcCc-HHHHHHHHHHHHHHhhhcCceEEEEECCCChHH
Q 003910 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVI-CAPT-RELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (787)
Q Consensus 263 rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLI-l~Pt-reLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~ 340 (787)
+-+++++++|+|||.... -+..++.. .+.++++ -+.+ |.-+ .+.+..+....++.+.....+.
T Consensus 98 ~vI~lvG~~GsGKTTt~~-kLA~~l~~-------~G~kVllv~~D~~r~~a---~eqL~~~~~~~gv~~~~~~~~~---- 162 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAG-KLAYFYKK-------RGYKVGLVAADVYRPAA---YDQLLQLGNQIGVQVYGEPNNQ---- 162 (433)
T ss_dssp EEEEECCCTTSCHHHHHH-HHHHHHHH-------TTCCEEEEEECCSCHHH---HHHHHHHHHTTTCCEECCTTCS----
T ss_pred eEEEEECCCCCCHHHHHH-HHHHHHHH-------cCCeEEEEecCccchhH---HHHHHHHHHhcCCceeeccccC----
Confidence 457888999999997632 22233322 2334444 4443 3332 3345555554455443221111
Q ss_pred HHHHHhcCCcEEEeCHHHHH-HHHHhccccccceeEEEEechhhhh---cCCChHHHHHHhhhcCCCceEEEEeccCcHH
Q 003910 341 QFKELKAGCEIVIATPGRLI-DMLKMKALTMSRVTYLVLDEADRMF---DLGFEPQIRSIVGQIRPDRQTLLFSATMPRK 416 (787)
Q Consensus 341 ~~~~l~~~~dIIV~Tp~~L~-~~l~~~~~~l~~i~~lViDEah~m~---~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~ 416 (787)
.|..+. ..+. ......+++||||++-++. +..+...+..++..+.++.-+++++|+....
T Consensus 163 --------------dp~~i~~~al~--~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~ 226 (433)
T 3kl4_A 163 --------------NPIEIAKKGVD--IFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQK 226 (433)
T ss_dssp --------------CHHHHHHHHHH--HTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGG
T ss_pred --------------CHHHHHHHHHH--HHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchH
Confidence 122221 1121 1223478899999998643 3334556667777777787788889987655
Q ss_pred HHHHHHHHh
Q 003910 417 VEKLAREIL 425 (787)
Q Consensus 417 v~~l~~~~l 425 (787)
....+..|.
T Consensus 227 a~~~a~~f~ 235 (433)
T 3kl4_A 227 AYDLASRFH 235 (433)
T ss_dssp GHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555665554
No 124
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.04 E-value=0.31 Score=46.15 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=17.6
Q ss_pred CCEEEEccCCCchhHHHHHHHHHHH
Q 003910 263 RDIIGIAKTGSGKTAAFVLPMIVHI 287 (787)
Q Consensus 263 rdvii~a~TGsGKTla~llp~l~~l 287 (787)
+.+++++++|+|||.. +..+...+
T Consensus 44 ~~~ll~G~~G~GKT~l-~~~~~~~~ 67 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAI-VEGLAQRI 67 (195)
T ss_dssp CEEEEECCTTSCHHHH-HHHHHHHH
T ss_pred CceEEECCCCCCHHHH-HHHHHHHH
Confidence 6799999999999975 33334444
No 125
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.83 E-value=0.14 Score=55.35 Aligned_cols=15 Identities=27% Similarity=0.470 Sum_probs=13.8
Q ss_pred CEEEEccCCCchhHH
Q 003910 264 DIIGIAKTGSGKTAA 278 (787)
Q Consensus 264 dvii~a~TGsGKTla 278 (787)
.+++.+++|+|||..
T Consensus 46 ~~li~G~~G~GKTtl 60 (389)
T 1fnn_A 46 RATLLGRPGTGKTVT 60 (389)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 699999999999975
No 126
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=93.78 E-value=0.044 Score=54.46 Aligned_cols=41 Identities=17% Similarity=0.072 Sum_probs=26.4
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHH
Q 003910 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRE 309 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~Ptre 309 (787)
.|.=.++++++|+|||.. ++-.+.... ..+.+++|+.|...
T Consensus 27 ~G~I~vitG~M~sGKTT~-Llr~~~r~~-------~~g~kvli~kp~~D 67 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEE-LIRRLRRGI-------YAKQKVVVFKPAID 67 (219)
T ss_dssp CCEEEEEEECTTSCHHHH-HHHHHHHHH-------HTTCCEEEEEEC--
T ss_pred CceEEEEECCCCCCHHHH-HHHHHHHHH-------HcCCceEEEEeccC
Confidence 355678899999999976 333333332 23566899988643
No 127
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=93.74 E-value=0.44 Score=46.33 Aligned_cols=39 Identities=18% Similarity=0.206 Sum_probs=23.4
Q ss_pred cceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEe
Q 003910 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (787)
Q Consensus 371 ~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~S 410 (787)
....+|||||+|.+... ....+..++........+|+.+
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~ 139 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSC 139 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 45678999999987532 1334455555544455555444
No 128
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.72 E-value=0.26 Score=53.12 Aligned_cols=16 Identities=31% Similarity=0.293 Sum_probs=14.3
Q ss_pred CCEEEEccCCCchhHH
Q 003910 263 RDIIGIAKTGSGKTAA 278 (787)
Q Consensus 263 rdvii~a~TGsGKTla 278 (787)
+.+++.+++|+|||..
T Consensus 46 ~~vll~G~~G~GKT~l 61 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFV 61 (384)
T ss_dssp CEEEEEECTTSSHHHH
T ss_pred CcEEEECCCCCCHHHH
Confidence 5699999999999975
No 129
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=93.56 E-value=0.11 Score=62.02 Aligned_cols=100 Identities=13% Similarity=0.090 Sum_probs=74.8
Q ss_pred EecCCCcchHHHH-HHhcCCcCCCCCEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhcCCcc
Q 003910 448 HVIPSDAEKLPWL-LEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYH 522 (787)
Q Consensus 448 ~~~~~~~~k~~~L-~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~ 522 (787)
...+....|-... +-.+.......++||.++++.-+..+++.|... ++.+..+||+++..++...+..+.+|..+
T Consensus 394 l~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~ 473 (780)
T 1gm5_A 394 LQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQID 473 (780)
T ss_dssp EECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCC
T ss_pred EEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCC
Confidence 3444555664332 222222223568999999999888887777654 78999999999999999999999999999
Q ss_pred EEEEeh-hhhccCCCCCccEEEEecC
Q 003910 523 VLIATD-VAARGLDIKSIKSVVNFDI 547 (787)
Q Consensus 523 VLVaT~-v~~rGlDip~v~~VI~~d~ 547 (787)
|+|+|. .+...+.+.++.+||.=..
T Consensus 474 IvVgT~~ll~~~~~~~~l~lVVIDEa 499 (780)
T 1gm5_A 474 VVIGTHALIQEDVHFKNLGLVIIDEQ 499 (780)
T ss_dssp EEEECTTHHHHCCCCSCCCEEEEESC
T ss_pred EEEECHHHHhhhhhccCCceEEeccc
Confidence 999995 4556788889988886443
No 130
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=93.50 E-value=0.13 Score=64.92 Aligned_cols=73 Identities=26% Similarity=0.200 Sum_probs=53.2
Q ss_pred CCCcHHHHHHHHHHHcCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHh
Q 003910 246 EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (787)
Q Consensus 246 ~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~ 322 (787)
.++|+-|.++|..- +++++|.|..|||||.+.+--++..+..... ......+|+|++|+..|..+.+.+...+
T Consensus 9 ~~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~--~~~~~~il~~Tft~~aa~e~~~ri~~~l 81 (1232)
T 3u4q_A 9 STWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEEN--PIDVDRLLVVTFTNASAAEMKHRIAEAL 81 (1232)
T ss_dssp -CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSS--CCCGGGEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCC--CCCccceEEEeccHHHHHHHHHHHHHHH
Confidence 46899999998753 7899999999999998744444444433210 0123468999999999999988887743
No 131
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=93.33 E-value=0.23 Score=55.19 Aligned_cols=44 Identities=16% Similarity=0.400 Sum_probs=25.3
Q ss_pred ceeEEEEechhhhhcC-CChHHHHHHhhhc-CCCceEEEEeccCcH
Q 003910 372 RVTYLVLDEADRMFDL-GFEPQIRSIVGQI-RPDRQTLLFSATMPR 415 (787)
Q Consensus 372 ~i~~lViDEah~m~~~-~f~~~i~~il~~~-~~~~q~ll~SAT~~~ 415 (787)
...+|||||+|.+... .....+..++..+ ....++|+.|...+.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~ 239 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQ 239 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGG
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHH
Confidence 5678999999998752 1233344444443 334555555444343
No 132
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.27 E-value=0.34 Score=53.61 Aligned_cols=132 Identities=17% Similarity=0.176 Sum_probs=69.2
Q ss_pred CCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEE-cC-cHHHHHHHHHHHHHHhhhcCceEEEEECCCChHH
Q 003910 263 RDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC-AP-TRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (787)
Q Consensus 263 rdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl-~P-treLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~ 340 (787)
.-+++++++|+|||.+. .-+..++.. .+.+++++ +. .|.-+ ++.++.++...++.+.....+.
T Consensus 101 ~vIlivG~~G~GKTTt~-~kLA~~l~~-------~G~kVllv~~D~~R~aa---~eqL~~~~~~~gvpv~~~~~~~---- 165 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTV-AKLARYFQK-------RGYKVGVVCSDTWRPGA---YHQLRQLLDRYHIEVFGNPQEK---- 165 (443)
T ss_dssp EEEEEECCTTSSHHHHH-HHHHHHHHT-------TTCCEEEEECCCSSTHH---HHHHHHHHGGGTCEEECCTTCC----
T ss_pred eEEEEECcCCCCHHHHH-HHHHHHHHH-------CCCeEEEEeCCCcchhH---HHHHHHHHHhcCCcEEecCCCC----
Confidence 45788999999999863 333333322 23445444 33 33333 3456666665666554322221
Q ss_pred HHHHHhcCCcEEEeCHHHHH-HHHHhccccccceeEEEEechhhhhcC-CChHHHHHHhhhcCCCceEEEEeccCcHHHH
Q 003910 341 QFKELKAGCEIVIATPGRLI-DMLKMKALTMSRVTYLVLDEADRMFDL-GFEPQIRSIVGQIRPDRQTLLFSATMPRKVE 418 (787)
Q Consensus 341 ~~~~l~~~~dIIV~Tp~~L~-~~l~~~~~~l~~i~~lViDEah~m~~~-~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~ 418 (787)
.|..+. +.+.. .....+++||||.+=++... .....+..+...+.++.-++++.||......
T Consensus 166 --------------dp~~i~~~al~~--a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~ 229 (443)
T 3dm5_A 166 --------------DAIKLAKEGVDY--FKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAY 229 (443)
T ss_dssp --------------CHHHHHHHHHHH--HHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH
T ss_pred --------------CHHHHHHHHHHH--HHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHH
Confidence 122221 11111 11124678888888543211 1223445555556677777888888765555
Q ss_pred HHHHHHh
Q 003910 419 KLAREIL 425 (787)
Q Consensus 419 ~l~~~~l 425 (787)
..+..|.
T Consensus 230 ~~a~~f~ 236 (443)
T 3dm5_A 230 NQALAFK 236 (443)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555554
No 133
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.26 E-value=0.64 Score=49.08 Aligned_cols=51 Identities=18% Similarity=0.273 Sum_probs=29.8
Q ss_pred CccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHH-----cCCCEEEEccCCCchhHH
Q 003910 222 RPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIIL-----SGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 222 ~pi~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il-----~grdvii~a~TGsGKTla 278 (787)
.|-.+|.++.-...+.+.|...-. .|. ..|.++ ..+.+|+.+|+|+|||..
T Consensus 12 ~~~~~~~di~G~~~~~~~l~~~i~---~~~---~~~~~~~~~~~~~~~vLl~GppGtGKT~l 67 (322)
T 3eie_A 12 KPNVKWEDVAGLEGAKEALKEAVI---LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYL 67 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHTH---HHH---HCGGGCCTTCCCCCEEEEECSSSSCHHHH
T ss_pred CCCCCHHHhcChHHHHHHHHHHHH---HHH---hCHHHHhcCCCCCCeEEEECCCCCcHHHH
Confidence 344678888766666666653210 000 001111 125699999999999975
No 134
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=93.02 E-value=0.15 Score=54.37 Aligned_cols=41 Identities=15% Similarity=0.158 Sum_probs=27.2
Q ss_pred CcHHHHHHHHHHH----cCC---CEEEEccCCCchhHHHHHHHHHHHhc
Q 003910 248 PTSIQCQALPIIL----SGR---DIIGIAKTGSGKTAAFVLPMIVHIMD 289 (787)
Q Consensus 248 ptp~Q~~ai~~il----~gr---dvii~a~TGsGKTla~llp~l~~l~~ 289 (787)
+.|+|.+++..+. +++ .+++.+|.|+|||.. +..+...+..
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~-a~~la~~l~~ 50 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDAL-IYALSRYLLC 50 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHH-HHHHHHHHTC
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHH-HHHHHHHHhC
Confidence 3567777765544 443 389999999999975 4444455543
No 135
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=93.02 E-value=0.25 Score=51.01 Aligned_cols=54 Identities=24% Similarity=0.314 Sum_probs=30.6
Q ss_pred CccCCccccCCCHHHHHHHHHCCCCCCcHHH-HHHHHHH--HcCCCEEEEccCCCchhHH
Q 003910 222 RPVKTFEDCGFSTQLMHAISKQGYEKPTSIQ-CQALPII--LSGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 222 ~pi~sf~~~~l~~~l~~~l~~~g~~~ptp~Q-~~ai~~i--l~grdvii~a~TGsGKTla 278 (787)
.|-.+|+++.-.+..++.|...- . .+.+ .+.+..+ ...+.+++.+|+|+|||..
T Consensus 11 ~~~~~~~~i~G~~~~~~~l~~~~-~--~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~l 67 (285)
T 3h4m_A 11 RPNVRYEDIGGLEKQMQEIREVV-E--LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLL 67 (285)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHT-H--HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHH
T ss_pred CCCCCHHHhcCHHHHHHHHHHHH-H--HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHH
Confidence 34466888766666666655321 0 0000 0111111 2446899999999999975
No 136
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=92.91 E-value=0.27 Score=53.69 Aligned_cols=99 Identities=16% Similarity=0.167 Sum_probs=72.6
Q ss_pred EecCCCcchHHHH-HHhcCCcCCCCCEEEEecccccHHHHHHHHHH---cCCceeeccCCCCHHHHHHHHHHhhcCCccE
Q 003910 448 HVIPSDAEKLPWL-LEKLPGMIDDGDVLVFASKKTTVDEIESQLAQ---KGFKAAALHGDKDQASRMEILQKFKSGVYHV 523 (787)
Q Consensus 448 ~~~~~~~~k~~~L-~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~---~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~V 523 (787)
...+....|-... +-.+.......++||.+|++.-+..+++.|.. .++.+..+||+.+..++...+..+..+..+|
T Consensus 41 v~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~I 120 (414)
T 3oiy_A 41 MVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHI 120 (414)
T ss_dssp CCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSE
T ss_pred EEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCE
Confidence 3444555664422 22222223456899999999999999999988 5789999999999999999999999999999
Q ss_pred EEEehh-hh---ccCCCCCccEEEEec
Q 003910 524 LIATDV-AA---RGLDIKSIKSVVNFD 546 (787)
Q Consensus 524 LVaT~v-~~---rGlDip~v~~VI~~d 546 (787)
+|+|.- +. .-+++..+.+||.=.
T Consensus 121 iv~Tp~~l~~~l~~~~~~~~~~iViDE 147 (414)
T 3oiy_A 121 LVFSTQFVSKNREKLSQKRFDFVFVDD 147 (414)
T ss_dssp EEEEHHHHHHCHHHHTTCCCSEEEESC
T ss_pred EEECHHHHHHHHHHhccccccEEEEeC
Confidence 999942 21 125566778877533
No 137
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=92.62 E-value=0.32 Score=51.20 Aligned_cols=41 Identities=20% Similarity=0.231 Sum_probs=25.1
Q ss_pred cceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEec
Q 003910 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSA 411 (787)
Q Consensus 371 ~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SA 411 (787)
....+|||||+|.|........+..++...+...++|+.+.
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n 144 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITAN 144 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEES
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeC
Confidence 36789999999997611123445555555555555555443
No 138
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=92.39 E-value=0.63 Score=48.60 Aligned_cols=53 Identities=17% Similarity=0.292 Sum_probs=29.5
Q ss_pred ccCCccccCCCHHHHHHHHHCCCCCCcHHHH-HHH-HH-HHcCCCEEEEccCCCchhHH
Q 003910 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQC-QAL-PI-ILSGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 223 pi~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~-~ai-~~-il~grdvii~a~TGsGKTla 278 (787)
|-.+|+++.-...+.+.|...- . .|... +.+ .. +..++.+++++|+|+|||+.
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v-~--~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~l 65 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELV-Q--YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 65 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHH-H--HHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHH-H--HHhhCHHHHHHcCCCCCceEEEECCCCcCHHHH
Confidence 4467888866666655554320 0 00000 000 00 12346799999999999975
No 139
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=92.38 E-value=0.13 Score=50.34 Aligned_cols=39 Identities=10% Similarity=0.040 Sum_probs=26.0
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCc
Q 003910 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPT 307 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~Pt 307 (787)
.++=.++.+++|+|||.. |+-.+..... .+.+++++.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~-Ll~~i~n~~~-------~~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTE-LMRRVRRFQI-------AQYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHH-HHHHHHHHHH-------TTCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHH-HHHHHHHHHH-------cCCeEEEEccc
Confidence 356688899999999965 3433433322 24568888776
No 140
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.17 E-value=0.42 Score=51.13 Aligned_cols=17 Identities=41% Similarity=0.481 Sum_probs=15.0
Q ss_pred CCCEEEEccCCCchhHH
Q 003910 262 GRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 262 grdvii~a~TGsGKTla 278 (787)
++.+++.+++|+|||..
T Consensus 45 ~~~vli~G~~G~GKTtl 61 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAV 61 (386)
T ss_dssp CCCEEEEECTTSSHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 46899999999999975
No 141
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=92.14 E-value=0.48 Score=49.84 Aligned_cols=17 Identities=18% Similarity=0.235 Sum_probs=15.3
Q ss_pred CCCEEEEccCCCchhHH
Q 003910 262 GRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 262 grdvii~a~TGsGKTla 278 (787)
++++++.+++|+|||..
T Consensus 152 ~~~lll~G~~GtGKT~L 168 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYL 168 (308)
T ss_dssp CCEEEEECSTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 57899999999999975
No 142
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=92.00 E-value=0.12 Score=53.98 Aligned_cols=16 Identities=25% Similarity=0.326 Sum_probs=14.4
Q ss_pred CCEEEEccCCCchhHH
Q 003910 263 RDIIGIAKTGSGKTAA 278 (787)
Q Consensus 263 rdvii~a~TGsGKTla 278 (787)
.++++++|+|+|||..
T Consensus 68 ~~vll~G~~GtGKT~l 83 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTV 83 (309)
T ss_dssp CEEEEEECTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 4699999999999975
No 143
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=91.85 E-value=0.35 Score=44.52 Aligned_cols=19 Identities=11% Similarity=0.184 Sum_probs=16.5
Q ss_pred HcCCCEEEEccCCCchhHH
Q 003910 260 LSGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 260 l~grdvii~a~TGsGKTla 278 (787)
....++++.+++|+|||..
T Consensus 22 ~~~~~vll~G~~GtGKt~l 40 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTG 40 (145)
T ss_dssp TCCSCEEEESSTTSSHHHH
T ss_pred CCCCCEEEECCCCCCHHHH
Confidence 4567999999999999975
No 144
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.78 E-value=0.65 Score=51.24 Aligned_cols=55 Identities=15% Similarity=0.303 Sum_probs=35.3
Q ss_pred CCccCCccccCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHH
Q 003910 221 PRPVKTFEDCGFSTQLMHAISKQ---GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 221 P~pi~sf~~~~l~~~l~~~l~~~---g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla 278 (787)
.+|-.+|++.+--+...+.|... .+..|.-++...++ --+.+|+.+|+|+|||+.
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~---~prGvLLyGPPGTGKTll 231 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR---APKGALMYGPPGTGKTLL 231 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC---CCCEEEEESCTTSSHHHH
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeeEEECcCCCCHHHH
Confidence 45778999998777777666542 11223222222211 236899999999999975
No 145
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=91.62 E-value=0.18 Score=50.21 Aligned_cols=18 Identities=22% Similarity=0.117 Sum_probs=15.6
Q ss_pred cCCCEEEEccCCCchhHH
Q 003910 261 SGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla 278 (787)
.++.+++++++|+|||..
T Consensus 51 ~~~~~ll~G~~G~GKT~l 68 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHL 68 (242)
T ss_dssp SCSEEEEECSTTSSHHHH
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 357899999999999975
No 146
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=91.49 E-value=0.16 Score=46.88 Aligned_cols=20 Identities=10% Similarity=0.016 Sum_probs=17.0
Q ss_pred HHcCCCEEEEccCCCchhHH
Q 003910 259 ILSGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 259 il~grdvii~a~TGsGKTla 278 (787)
+....++++.+++|+|||..
T Consensus 24 ~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHH
T ss_pred hCCCCcEEEECCCCccHHHH
Confidence 44668999999999999964
No 147
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=91.38 E-value=2.6 Score=41.11 Aligned_cols=15 Identities=27% Similarity=0.299 Sum_probs=13.5
Q ss_pred CEEEEccCCCchhHH
Q 003910 264 DIIGIAKTGSGKTAA 278 (787)
Q Consensus 264 dvii~a~TGsGKTla 278 (787)
.+++.+++|+|||..
T Consensus 47 ~~ll~G~~G~GKT~l 61 (250)
T 1njg_A 47 AYLFSGTRGVGKTSI 61 (250)
T ss_dssp EEEEECSTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 589999999999975
No 148
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=91.36 E-value=1.2 Score=46.92 Aligned_cols=16 Identities=31% Similarity=0.347 Sum_probs=14.5
Q ss_pred CCEEEEccCCCchhHH
Q 003910 263 RDIIGIAKTGSGKTAA 278 (787)
Q Consensus 263 rdvii~a~TGsGKTla 278 (787)
..+++.+++|+|||..
T Consensus 56 ~~vll~G~~GtGKT~l 71 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTL 71 (338)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CeEEEECcCCCCHHHH
Confidence 5899999999999975
No 149
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=90.97 E-value=2.9 Score=41.95 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=14.7
Q ss_pred CCCEEEEccCCCchhHH
Q 003910 262 GRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 262 grdvii~a~TGsGKTla 278 (787)
.+.+++.+|+|+|||..
T Consensus 39 ~~~vll~G~~GtGKT~l 55 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLL 55 (262)
T ss_dssp CCEEEEESCTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 35799999999999975
No 150
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.85 E-value=0.51 Score=50.24 Aligned_cols=42 Identities=12% Similarity=0.313 Sum_probs=27.2
Q ss_pred cceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEeccC
Q 003910 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATM 413 (787)
Q Consensus 371 ~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~ 413 (787)
....+|||||+|. ++......+..++...+....+|+.|..+
T Consensus 133 ~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 133 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 4678999999998 44333455666676666565556555544
No 151
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.11 E-value=0.95 Score=49.30 Aligned_cols=53 Identities=21% Similarity=0.315 Sum_probs=31.4
Q ss_pred ccCCccccCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHH
Q 003910 223 PVKTFEDCGFSTQLMHAISKQ---GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 223 pi~sf~~~~l~~~l~~~l~~~---g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla 278 (787)
|-.+|++.+=-+...+.|... .+..|--++.-.+ .--+.+|+.+|+|+|||+.
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi---~~prGvLL~GPPGTGKTll 198 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI---AQPKGVILYGPPGTGKTLL 198 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCCCEEEESCSSSSHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCceEEeCCCCCCHHHH
Confidence 557899987556655555532 1111221221111 1237899999999999975
No 152
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=89.73 E-value=2.2 Score=41.29 Aligned_cols=71 Identities=20% Similarity=0.266 Sum_probs=52.2
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHH---Hh-cCCcEEEeCHHHHHHHHHhccccccce
Q 003910 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE---LK-AGCEIVIATPGRLIDMLKMKALTMSRV 373 (787)
Q Consensus 298 ~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~---l~-~~~dIIV~Tp~~L~~~l~~~~~~l~~i 373 (787)
++++||.|+++..+..+++.+... ++.+..++|+.+..+.... +. ....|+|+| +.+. ..+++..+
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~~~~-~Gldi~~v 123 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----DVAS-KGLDFPAI 123 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----HHHH-TTCCCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----Cchh-cCCCcccC
Confidence 456999999999999888877765 7899999998876544332 23 258999999 3332 34567788
Q ss_pred eEEEE
Q 003910 374 TYLVL 378 (787)
Q Consensus 374 ~~lVi 378 (787)
.+||.
T Consensus 124 ~~VI~ 128 (191)
T 2p6n_A 124 QHVIN 128 (191)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 88776
No 153
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=89.71 E-value=0.47 Score=58.82 Aligned_cols=99 Identities=16% Similarity=0.175 Sum_probs=73.0
Q ss_pred EecCCCcchHHHHHHh-cCCcCCCCCEEEEecccccHHHHHHHHHH---cCCceeeccCCCCHHHHHHHHHHhhcCCccE
Q 003910 448 HVIPSDAEKLPWLLEK-LPGMIDDGDVLVFASKKTTVDEIESQLAQ---KGFKAAALHGDKDQASRMEILQKFKSGVYHV 523 (787)
Q Consensus 448 ~~~~~~~~k~~~L~~~-L~~~~~~~kvLVF~~s~~~a~~l~~~L~~---~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~V 523 (787)
...+....|-...+-. +.......++||.+|++.-+..+++.|.. .++.+..+||+++..+|...+..+..|..+|
T Consensus 98 v~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~I 177 (1104)
T 4ddu_A 98 MVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHI 177 (1104)
T ss_dssp ECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSE
T ss_pred EEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCE
Confidence 3444555665433222 22123456899999999999999999988 5678999999999989999999999999999
Q ss_pred EEEeh-hhhc---cCCCCCccEEEEec
Q 003910 524 LIATD-VAAR---GLDIKSIKSVVNFD 546 (787)
Q Consensus 524 LVaT~-v~~r---GlDip~v~~VI~~d 546 (787)
||+|. .+.. -+++..+.+||.=.
T Consensus 178 lV~Tp~rL~~~l~~l~~~~l~~lViDE 204 (1104)
T 4ddu_A 178 LVFSTQFVSKNREKLSQKRFDFVFVDD 204 (1104)
T ss_dssp EEEEHHHHHHSHHHHHTSCCSEEEESC
T ss_pred EEECHHHHHHHHHhhcccCcCEEEEeC
Confidence 99994 2211 25567888888633
No 154
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=89.62 E-value=1.1 Score=46.71 Aligned_cols=39 Identities=18% Similarity=0.257 Sum_probs=23.5
Q ss_pred cceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEe
Q 003910 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (787)
Q Consensus 371 ~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~S 410 (787)
....+|||||+|.+... ....+..++...+....+|+.+
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 45789999999987532 1234455555544555555543
No 155
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=89.60 E-value=1.4 Score=41.67 Aligned_cols=71 Identities=20% Similarity=0.220 Sum_probs=52.3
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHH---Hhc-CCcEEEeCHHHHHHHHHhccccccce
Q 003910 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE---LKA-GCEIVIATPGRLIDMLKMKALTMSRV 373 (787)
Q Consensus 298 ~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~---l~~-~~dIIV~Tp~~L~~~l~~~~~~l~~i 373 (787)
..++||.|+++..+..++..+... ++.+..++|+.+..+.... +.. ...|+|||. .+ ...+++..+
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~-~~Gid~~~~ 103 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----VC-ARGIDVKQV 103 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----SC-CTTTCCTTE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----ch-hcCCCcccC
Confidence 457999999999998887777654 7889999999876554332 233 479999992 22 335677888
Q ss_pred eEEEE
Q 003910 374 TYLVL 378 (787)
Q Consensus 374 ~~lVi 378 (787)
.+||.
T Consensus 104 ~~Vi~ 108 (175)
T 2rb4_A 104 TIVVN 108 (175)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 88885
No 156
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=89.44 E-value=3.3 Score=43.55 Aligned_cols=50 Identities=20% Similarity=0.288 Sum_probs=29.0
Q ss_pred ccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHc-----CCCEEEEccCCCchhHH
Q 003910 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILS-----GRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 223 pi~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~-----grdvii~a~TGsGKTla 278 (787)
|-.+|++++--..+.+.|...-. .|.+ .|.++. .+.+++.+|+|+|||+.
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~---~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~l 61 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVI---LPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYL 61 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH---HHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHHh---CHHHHhCCCCCCceEEEECCCCccHHHH
Confidence 44678888766666665543200 0000 011111 26799999999999975
No 157
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=89.34 E-value=2.2 Score=39.82 Aligned_cols=73 Identities=19% Similarity=0.332 Sum_probs=52.7
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHH---Hhc-CCcEEEeCHHHHHHHHHhccccccce
Q 003910 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE---LKA-GCEIVIATPGRLIDMLKMKALTMSRV 373 (787)
Q Consensus 298 ~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~---l~~-~~dIIV~Tp~~L~~~l~~~~~~l~~i 373 (787)
+.++||.|+++..+..+++.+... ++.+..++|+.+..+.... +.. ...|+|+|. .+ ...+++..+
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gld~~~~ 104 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----VA-ARGIDIENI 104 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GG-TTTCCCSCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hh-hcCCchhcC
Confidence 446899999999999888777765 7899999998876544332 233 478999992 22 335567788
Q ss_pred eEEEEec
Q 003910 374 TYLVLDE 380 (787)
Q Consensus 374 ~~lViDE 380 (787)
.+||.-.
T Consensus 105 ~~Vi~~~ 111 (163)
T 2hjv_A 105 SLVINYD 111 (163)
T ss_dssp SEEEESS
T ss_pred CEEEEeC
Confidence 8887644
No 158
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=89.19 E-value=4.6 Score=42.89 Aligned_cols=16 Identities=38% Similarity=0.607 Sum_probs=14.5
Q ss_pred CCEEEEccCCCchhHH
Q 003910 263 RDIIGIAKTGSGKTAA 278 (787)
Q Consensus 263 rdvii~a~TGsGKTla 278 (787)
+.+++.+|+|+|||..
T Consensus 71 ~~vLl~GppGtGKT~l 86 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAI 86 (368)
T ss_dssp CEEEEEESTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5799999999999975
No 159
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=89.02 E-value=2.5 Score=45.78 Aligned_cols=17 Identities=29% Similarity=0.499 Sum_probs=15.1
Q ss_pred CCCEEEEccCCCchhHH
Q 003910 262 GRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 262 grdvii~a~TGsGKTla 278 (787)
.+.+|+.+++|+|||..
T Consensus 148 ~~~vLL~GppGtGKT~l 164 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTML 164 (389)
T ss_dssp CSEEEEESSTTSCHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 46899999999999975
No 160
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=88.96 E-value=1 Score=56.04 Aligned_cols=99 Identities=10% Similarity=0.132 Sum_probs=74.7
Q ss_pred EEEecCCCcchHHHHH-HhcCCcCCCCCEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhcCC
Q 003910 446 VVHVIPSDAEKLPWLL-EKLPGMIDDGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGV 520 (787)
Q Consensus 446 ~~~~~~~~~~k~~~L~-~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~G~ 520 (787)
.+...+....|-...+ ..+.......++||.|+++.-+..+++.|.+. ++.+..+++..+..++..++..+..|.
T Consensus 627 ~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~ 706 (1151)
T 2eyq_A 627 RLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGK 706 (1151)
T ss_dssp EEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCC
Confidence 3444555666654322 11111223458999999999888888887653 578999999999999999999999999
Q ss_pred ccEEEEe-hhhhccCCCCCccEEEE
Q 003910 521 YHVLIAT-DVAARGLDIKSIKSVVN 544 (787)
Q Consensus 521 ~~VLVaT-~v~~rGlDip~v~~VI~ 544 (787)
++|+|+| ..+...+.+.++.+||.
T Consensus 707 ~dIvV~T~~ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 707 IDILIGTHKLLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp CSEEEECTHHHHSCCCCSSEEEEEE
T ss_pred CCEEEECHHHHhCCccccccceEEE
Confidence 9999999 55666788888888875
No 161
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=88.71 E-value=2.4 Score=41.44 Aligned_cols=73 Identities=21% Similarity=0.261 Sum_probs=55.2
Q ss_pred CCCEEEEecccccHHHHHHHHHHc-----CCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehh-h-----hccCCCCC
Q 003910 470 DGDVLVFASKKTTVDEIESQLAQK-----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDV-A-----ARGLDIKS 538 (787)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~-----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v-~-----~rGlDip~ 538 (787)
..++||.|+++.-+..+++.+... ++.+..++|+.+...+.. .+..+..+|+|+|.- + ...+++..
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 348999999999999998888765 688999999998766543 344567799999942 2 13467778
Q ss_pred ccEEEEe
Q 003910 539 IKSVVNF 545 (787)
Q Consensus 539 v~~VI~~ 545 (787)
+++||.=
T Consensus 159 ~~~lViD 165 (220)
T 1t6n_A 159 IKHFILD 165 (220)
T ss_dssp CCEEEEE
T ss_pred CCEEEEc
Confidence 8887753
No 162
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.00 E-value=0.81 Score=48.48 Aligned_cols=40 Identities=20% Similarity=0.208 Sum_probs=24.4
Q ss_pred cceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEec
Q 003910 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSA 411 (787)
Q Consensus 371 ~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SA 411 (787)
....+|||||+|.+... ....+..++...+....+++.+.
T Consensus 132 ~~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~~ 171 (353)
T 1sxj_D 132 PPYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLICN 171 (353)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred CCceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEeC
Confidence 35679999999987532 12345555555555555555443
No 163
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=87.76 E-value=14 Score=38.44 Aligned_cols=53 Identities=13% Similarity=0.259 Sum_probs=29.6
Q ss_pred CHHHHHHHHHhccccccceeEEEEechhhhhc---CCChHHHHHHhhhcCCCceEEEEec
Q 003910 355 TPGRLIDMLKMKALTMSRVTYLVLDEADRMFD---LGFEPQIRSIVGQIRPDRQTLLFSA 411 (787)
Q Consensus 355 Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~---~~f~~~i~~il~~~~~~~q~ll~SA 411 (787)
+...++..+..... .--+|||||+|.+.. ..+...+..++... +...+|+.+.
T Consensus 123 ~~~~l~~~l~~~~~---~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~g~ 178 (357)
T 2fna_A 123 SFANLLESFEQASK---DNVIIVLDEAQELVKLRGVNLLPALAYAYDNL-KRIKFIMSGS 178 (357)
T ss_dssp CHHHHHHHHHHTCS---SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHC-TTEEEEEEES
T ss_pred hHHHHHHHHHhcCC---CCeEEEEECHHHhhccCchhHHHHHHHHHHcC-CCeEEEEEcC
Confidence 34455555543211 245899999999864 34656666665543 2444444433
No 164
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.51 E-value=6 Score=43.43 Aligned_cols=54 Identities=19% Similarity=0.214 Sum_probs=30.8
Q ss_pred CccCCccccCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHH
Q 003910 222 RPVKTFEDCGFSTQLMHAISKQ---GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 222 ~pi~sf~~~~l~~~l~~~l~~~---g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla 278 (787)
+|-.+|++.+--+.+.+.|... .+..|--++...+ ..-+.+|+.+|+|+|||+.
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~---~~prGiLL~GPPGtGKT~l 222 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI---DPPRGVLLYGPPGTGKTML 222 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTTTHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCceEEEECCCCCCHHHH
Confidence 4557899987555555555432 0111111111111 1236799999999999975
No 165
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=87.49 E-value=1.5 Score=48.43 Aligned_cols=114 Identities=22% Similarity=0.107 Sum_probs=54.7
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHH
Q 003910 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ 341 (787)
Q Consensus 262 grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~ 341 (787)
|.-++++|++|+|||.. ++-++.++... .+..++++..- .-..|+...+..... ++....+..|.-....
T Consensus 200 G~l~ii~G~pg~GKT~l-al~ia~~~a~~------~g~~vl~~slE-~~~~~l~~R~~~~~~--~i~~~~l~~g~l~~~~ 269 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAF-ALTIAQNAALK------EGVGVGIYSLE-MPAAQLTLRMMCSEA--RIDMNRVRLGQLTDRD 269 (444)
T ss_dssp TCEEEEEECTTSCHHHH-HHHHHHHHHHT------TCCCEEEEESS-SCHHHHHHHHHHHHT--TCCTTTCCGGGCCHHH
T ss_pred CcEEEEEeCCCCCHHHH-HHHHHHHHHHh------CCCeEEEEECC-CCHHHHHHHHHHHHc--CCCHHHHhCCCCCHHH
Confidence 35688899999999974 45555444321 13346665432 223344433322211 2211111112112222
Q ss_pred HHHHh------cCCcEEEe-----CHHHHHHHHHhccccccceeEEEEechhhhhc
Q 003910 342 FKELK------AGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMFD 386 (787)
Q Consensus 342 ~~~l~------~~~dIIV~-----Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~ 386 (787)
+..+. ....|.|. |...|...+.+-.. -..+++||||..+.|..
T Consensus 270 ~~~~~~a~~~l~~~~l~i~d~~~~s~~~l~~~~~~l~~-~~~~~lIvID~l~~~~~ 324 (444)
T 2q6t_A 270 FSRLVDVASRLSEAPIYIDDTPDLTLMEVRARARRLVS-QNQVGLIIIDYLQLMSG 324 (444)
T ss_dssp HHHHHHHHHHHHTSCEEEECCTTCBHHHHHHHHHHHHH-HSCCCEEEEECGGGCBC
T ss_pred HHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-HcCCCEEEEcChhhcCC
Confidence 22211 12455553 44555544432111 12588999999998864
No 166
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=87.46 E-value=2.3 Score=47.10 Aligned_cols=115 Identities=17% Similarity=0.125 Sum_probs=54.4
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHH
Q 003910 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~ 340 (787)
.|.-+++.|++|+|||.. ++-++.++... .+..++++..- .-..|+...+.... .++....+..|.-...
T Consensus 202 ~G~liiI~G~pG~GKTtl-~l~ia~~~~~~------~g~~Vl~~s~E-~s~~~l~~r~~~~~--~~~~~~~l~~g~l~~~ 271 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAF-ALNIAQNVATK------TNENVAIFSLE-MSAQQLVMRMLCAE--GNINAQNLRTGKLTPE 271 (454)
T ss_dssp TTCEEEEECCTTSCHHHH-HHHHHHHHHHH------SSCCEEEEESS-SCHHHHHHHHHHHH--HTCCHHHHHTSCCCHH
T ss_pred CCCEEEEECCCCCCHHHH-HHHHHHHHHHh------CCCcEEEEECC-CCHHHHHHHHHHHH--cCCCHHHHhcCCCCHH
Confidence 446689999999999974 44444444321 13346665432 11234433332111 1111100111111122
Q ss_pred HHHHH------hcCCcEEEe-----CHHHHHHHHHhccccccceeEEEEechhhhhc
Q 003910 341 QFKEL------KAGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMFD 386 (787)
Q Consensus 341 ~~~~l------~~~~dIIV~-----Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~ 386 (787)
.+..+ .....+.|. |.+.+...+..-. .-..+++||||+.+.|..
T Consensus 272 ~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~-~~~~~~livID~l~~~~~ 327 (454)
T 2r6a_A 272 DWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLK-QESGLGMIVIDYLQLIQG 327 (454)
T ss_dssp HHHHHHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHH-TTTCCCEEEEECGGGSCC
T ss_pred HHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH-HHcCCCEEEEccHHHhcc
Confidence 22111 112445553 4555554443211 113588999999998874
No 167
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=87.00 E-value=3.1 Score=38.89 Aligned_cols=73 Identities=18% Similarity=0.315 Sum_probs=52.2
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHH---Hhc-CCcEEEeCHHHHHHHHHhccccccce
Q 003910 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE---LKA-GCEIVIATPGRLIDMLKMKALTMSRV 373 (787)
Q Consensus 298 ~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~---l~~-~~dIIV~Tp~~L~~~l~~~~~~l~~i 373 (787)
..++||.|+++..+..++..+... ++.+..++|+.+..+.... +.. ...|+|||. .+ ...+++..+
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~G~d~~~~ 99 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LL-ARGIDVQQV 99 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----GG-TTTCCCCSC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----hh-hcCCCcccC
Confidence 456899999999998888777664 7889999998876544332 232 478999992 22 334567778
Q ss_pred eEEEEec
Q 003910 374 TYLVLDE 380 (787)
Q Consensus 374 ~~lViDE 380 (787)
.+||.-.
T Consensus 100 ~~Vi~~~ 106 (165)
T 1fuk_A 100 SLVINYD 106 (165)
T ss_dssp SEEEESS
T ss_pred CEEEEeC
Confidence 8877643
No 168
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=86.93 E-value=1.7 Score=41.17 Aligned_cols=73 Identities=15% Similarity=0.140 Sum_probs=52.7
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHH---Hhc-CCcEEEeCHHHHHHHHHhccccccce
Q 003910 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE---LKA-GCEIVIATPGRLIDMLKMKALTMSRV 373 (787)
Q Consensus 298 ~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~---l~~-~~dIIV~Tp~~L~~~l~~~~~~l~~i 373 (787)
+.++||.|+++..+..+++.+... ++.+..++|+.+..+.... +.. ...|+|||. .+ ...+++..+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~-~~Gldi~~~ 100 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----LF-GRGMDIERV 100 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS-----CC-STTCCGGGC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC-----ch-hcCcchhhC
Confidence 456899999999999888777765 7889999998876554332 232 489999993 22 234567788
Q ss_pred eEEEEec
Q 003910 374 TYLVLDE 380 (787)
Q Consensus 374 ~~lViDE 380 (787)
.+||.=+
T Consensus 101 ~~Vi~~d 107 (172)
T 1t5i_A 101 NIAFNYD 107 (172)
T ss_dssp SEEEESS
T ss_pred CEEEEEC
Confidence 8887643
No 169
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=86.88 E-value=3.3 Score=43.96 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=16.2
Q ss_pred CEEEEccCCCchhHHHHHHHHHHH
Q 003910 264 DIIGIAKTGSGKTAAFVLPMIVHI 287 (787)
Q Consensus 264 dvii~a~TGsGKTla~llp~l~~l 287 (787)
.+++.++.|+|||.. +..+...+
T Consensus 40 ~~ll~G~~G~GKT~l-a~~la~~l 62 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSI-ARLLAKGL 62 (373)
T ss_dssp EEEEESCTTSSHHHH-HHHHHHHH
T ss_pred EEEEECCCCCCHHHH-HHHHHHHh
Confidence 379999999999975 33333444
No 170
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=86.87 E-value=3.2 Score=41.10 Aligned_cols=50 Identities=18% Similarity=0.168 Sum_probs=28.6
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHH
Q 003910 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETK 319 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~ 319 (787)
.|.-+++++++|+|||.. ++-++..+.. .+..++++.-. ....++.+.+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl-~~~~~~~~~~-------~~~~v~~~~~e-~~~~~~~~~~~ 71 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIF-SQQFLWNGLK-------MGEPGIYVALE-EHPVQVRQNMA 71 (247)
T ss_dssp TTCEEEEEECTTSSHHHH-HHHHHHHHHH-------TTCCEEEEESS-SCHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHH-HHHHHHHHHh-------cCCeEEEEEcc-CCHHHHHHHHH
Confidence 456789999999999975 3334333332 13345665432 33445544444
No 171
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=86.77 E-value=2.1 Score=42.05 Aligned_cols=71 Identities=18% Similarity=0.295 Sum_probs=52.4
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHH---hc-CCcEEEeCHHHHHHHHHhccccccce
Q 003910 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKEL---KA-GCEIVIATPGRLIDMLKMKALTMSRV 373 (787)
Q Consensus 298 ~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l---~~-~~dIIV~Tp~~L~~~l~~~~~~l~~i 373 (787)
+..+||.|+++.-+..+++.+.+. ++.+..++|+.+..++...+ .. ..+|+||| +.+ ...+++..+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~-~~Gidi~~v 100 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVAT-----DVA-ARGLDIPQV 100 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEEC-----TTT-TCSSSCCCB
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEec-----Chh-hcCCCCccC
Confidence 456899999999999888877765 88999999998866543333 33 47899999 322 345667788
Q ss_pred eEEEE
Q 003910 374 TYLVL 378 (787)
Q Consensus 374 ~~lVi 378 (787)
.+||.
T Consensus 101 ~~Vi~ 105 (212)
T 3eaq_A 101 DLVVH 105 (212)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 88774
No 172
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=86.72 E-value=1.1 Score=51.55 Aligned_cols=79 Identities=20% Similarity=0.245 Sum_probs=62.8
Q ss_pred EEecCCCcchHH-HHHHhcCCcCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHh--hcCCccE
Q 003910 447 VHVIPSDAEKLP-WLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKF--KSGVYHV 523 (787)
Q Consensus 447 ~~~~~~~~~k~~-~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F--~~G~~~V 523 (787)
+...+....|-. .++-.+. ..+.+||.+|++.-+....+.|...++.+..++|+++..++..++..+ ..+..+|
T Consensus 63 lv~~pTGsGKTl~~~lpal~---~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~I 139 (591)
T 2v1x_A 63 FLVMPTGGGKSLCYQLPALC---SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKL 139 (591)
T ss_dssp EEECCTTSCTTHHHHHHHHT---SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCE
T ss_pred EEEECCCChHHHHHHHHHHH---cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCE
Confidence 344555556643 2222332 357899999999999999999999999999999999999999988888 5688999
Q ss_pred EEEeh
Q 003910 524 LIATD 528 (787)
Q Consensus 524 LVaT~ 528 (787)
||+|.
T Consensus 140 lv~Tp 144 (591)
T 2v1x_A 140 IYVTP 144 (591)
T ss_dssp EEECH
T ss_pred EEECh
Confidence 99996
No 173
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=86.53 E-value=3.2 Score=41.09 Aligned_cols=18 Identities=22% Similarity=0.180 Sum_probs=15.3
Q ss_pred cCCCEEEEccCCCchhHH
Q 003910 261 SGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla 278 (787)
.|.-+++.+++|+|||..
T Consensus 23 ~G~~~~i~G~~GsGKTtl 40 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQI 40 (243)
T ss_dssp TTSEEEEECCTTSSHHHH
T ss_pred CCeEEEEECCCCCcHHHH
Confidence 456789999999999975
No 174
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=86.49 E-value=1.4 Score=47.75 Aligned_cols=16 Identities=38% Similarity=0.551 Sum_probs=13.4
Q ss_pred CCEEE--EccCCCchhHH
Q 003910 263 RDIIG--IAKTGSGKTAA 278 (787)
Q Consensus 263 rdvii--~a~TGsGKTla 278 (787)
..+++ .++.|+|||..
T Consensus 51 ~~~li~i~G~~G~GKT~L 68 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTL 68 (412)
T ss_dssp EEEEEECTTCCSSSHHHH
T ss_pred CEEEEeCcCcCCCCHHHH
Confidence 45777 89999999975
No 175
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=86.45 E-value=1.2 Score=47.68 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=14.5
Q ss_pred CCEEEEccCCCchhHH
Q 003910 263 RDIIGIAKTGSGKTAA 278 (787)
Q Consensus 263 rdvii~a~TGsGKTla 278 (787)
+.+|+.+|+|+|||+.
T Consensus 85 ~~iLL~GppGtGKT~l 100 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYL 100 (355)
T ss_dssp CCEEEECSTTSCHHHH
T ss_pred ceEEEECCCCCcHHHH
Confidence 5799999999999975
No 176
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=85.81 E-value=0.98 Score=50.14 Aligned_cols=16 Identities=31% Similarity=0.443 Sum_probs=14.1
Q ss_pred CCEEEEccCCCchhHH
Q 003910 263 RDIIGIAKTGSGKTAA 278 (787)
Q Consensus 263 rdvii~a~TGsGKTla 278 (787)
..+|+++|+|+|||..
T Consensus 51 ~~vLL~GppGtGKTtl 66 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTL 66 (447)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred cEEEEECCCCCcHHHH
Confidence 3699999999999975
No 177
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=85.33 E-value=4.8 Score=39.72 Aligned_cols=92 Identities=16% Similarity=0.131 Sum_probs=62.1
Q ss_pred EecCCCcchHHH----HHHhcCCcCCCCCEEEEecccccHHHHHHHHHHc-----CCceeeccCCCCHHHHHHHHHHhhc
Q 003910 448 HVIPSDAEKLPW----LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK-----GFKAAALHGDKDQASRMEILQKFKS 518 (787)
Q Consensus 448 ~~~~~~~~k~~~----L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~-----g~~v~~lhg~~~~~eR~~~l~~F~~ 518 (787)
...+....|-.. ++..+.......++||.|+++.-+..+++.+... ++.+..++|+....++...+
T Consensus 66 ~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----- 140 (230)
T 2oxc_A 66 VQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL----- 140 (230)
T ss_dssp EECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----
T ss_pred EECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----
Confidence 344555666543 2333333233468999999999999999888764 67889999999876655443
Q ss_pred CCccEEEEehh-h----h-ccCCCCCccEEEE
Q 003910 519 GVYHVLIATDV-A----A-RGLDIKSIKSVVN 544 (787)
Q Consensus 519 G~~~VLVaT~v-~----~-rGlDip~v~~VI~ 544 (787)
...+|+|+|.- + . ..+++..+++||.
T Consensus 141 ~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 172 (230)
T 2oxc_A 141 KKCHIAVGSPGRIKQLIELDYLNPGSIRLFIL 172 (230)
T ss_dssp TSCSEEEECHHHHHHHHHTTSSCGGGCCEEEE
T ss_pred cCCCEEEECHHHHHHHHhcCCcccccCCEEEe
Confidence 25789999942 2 1 3456777777774
No 178
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.19 E-value=2.6 Score=44.55 Aligned_cols=39 Identities=18% Similarity=0.367 Sum_probs=24.4
Q ss_pred cceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEe
Q 003910 371 SRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (787)
Q Consensus 371 ~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~S 410 (787)
....++||||+|.|... ....+..++...+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 34789999999987532 2334555666655555555443
No 179
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.98 E-value=2.6 Score=43.69 Aligned_cols=38 Identities=18% Similarity=0.227 Sum_probs=22.6
Q ss_pred ceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEe
Q 003910 372 RVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFS 410 (787)
Q Consensus 372 ~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~S 410 (787)
...+|||||+|.|.... ...+..++...+....+|+.+
T Consensus 107 ~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHHH-HHHHHHHHhccCCCceEEEEe
Confidence 37899999999875421 223444555544455555544
No 180
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=84.90 E-value=3.4 Score=43.66 Aligned_cols=136 Identities=15% Similarity=0.179 Sum_probs=70.1
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHH
Q 003910 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ 341 (787)
Q Consensus 262 grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~ 341 (787)
+.-+.+++++|+|||.. +..|..++.. ..+...|+-+++...+. .+.+..+....++.++.-..+......
T Consensus 129 g~vi~lvG~nGaGKTTl--l~~Lag~l~~-----~~g~V~l~g~D~~r~~a--~eql~~~~~~~gv~~v~q~~~~~p~~~ 199 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTT--IAKLANWLKN-----HGFSVVIAASDTFRAGA--IEQLEEHAKRIGVKVIKHSYGADPAAV 199 (328)
T ss_dssp SEEEEEECCTTSSHHHH--HHHHHHHHHH-----TTCCEEEEEECCSSTTH--HHHHHHHHHHTTCEEECCCTTCCHHHH
T ss_pred CeEEEEECCCCCCHHHH--HHHHHHHHHh-----cCCEEEEEeecccccch--HHHHHHHHHHcCceEEeccccCCHHHH
Confidence 45688899999999974 4444444321 23344444455432221 122344444445544322222211111
Q ss_pred HHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhh-cCCChHHHHHHhhhcCCCceEEEEeccCcHHHHHH
Q 003910 342 FKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMF-DLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKL 420 (787)
Q Consensus 342 ~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~-~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l 420 (787)
+.+.+... .....+++++|.+-++. +......+..+...+.++..++++.++....+...
T Consensus 200 -----------------v~e~l~~~--~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~ 260 (328)
T 3e70_C 200 -----------------AYDAIQHA--KARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQ 260 (328)
T ss_dssp -----------------HHHHHHHH--HHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHH
T ss_pred -----------------HHHHHHHH--HhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHH
Confidence 11111100 01245678899887643 22234455556666677888888888877676666
Q ss_pred HHHHh
Q 003910 421 AREIL 425 (787)
Q Consensus 421 ~~~~l 425 (787)
++.+.
T Consensus 261 ~~~~~ 265 (328)
T 3e70_C 261 ARQFN 265 (328)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 181
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.82 E-value=0.92 Score=50.21 Aligned_cols=54 Identities=20% Similarity=0.294 Sum_probs=32.5
Q ss_pred CccCCccccCCCHHHHHHHHHCC---CCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHH
Q 003910 222 RPVKTFEDCGFSTQLMHAISKQG---YEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 222 ~pi~sf~~~~l~~~l~~~l~~~g---~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla 278 (787)
+|-.+|++.+--+.+.+.|...= +..|--++.-. +.--+.+|+.+|+|+|||+.
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPGTGKTlL 259 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPGTGKTLC 259 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTTSSHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCCCcHHHH
Confidence 45678999976666666665431 11111111111 01237899999999999975
No 182
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=84.73 E-value=1.7 Score=48.84 Aligned_cols=42 Identities=14% Similarity=0.271 Sum_probs=26.0
Q ss_pred eeEEEEechhhhhcCC----------ChHHHHHHhhhcCCCceEEEEeccCc
Q 003910 373 VTYLVLDEADRMFDLG----------FEPQIRSIVGQIRPDRQTLLFSATMP 414 (787)
Q Consensus 373 i~~lViDEah~m~~~~----------f~~~i~~il~~~~~~~q~ll~SAT~~ 414 (787)
..+|+|||+|.|.... ....+..++..+.....++++.||-.
T Consensus 298 p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~ 349 (489)
T 3hu3_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNR 349 (489)
T ss_dssp SEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESC
T ss_pred CcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCC
Confidence 4689999999886521 11234444555555566777777754
No 183
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=84.53 E-value=2.8 Score=43.67 Aligned_cols=16 Identities=25% Similarity=0.401 Sum_probs=14.6
Q ss_pred CCEEEEccCCCchhHH
Q 003910 263 RDIIGIAKTGSGKTAA 278 (787)
Q Consensus 263 rdvii~a~TGsGKTla 278 (787)
..+++++++|+|||..
T Consensus 39 ~~vll~G~~GtGKT~l 54 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTL 54 (324)
T ss_dssp CCCEEECCTTCCCHHH
T ss_pred CcEEEECCCCCCHHHH
Confidence 6899999999999975
No 184
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=84.48 E-value=1.4 Score=46.82 Aligned_cols=115 Identities=16% Similarity=0.135 Sum_probs=55.5
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHH
Q 003910 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~ 340 (787)
.|.=+++.|++|+|||.. ++-++.++.. .+..++|+..- .-..|+...+..... ++....+..|.-...
T Consensus 45 ~G~LiiIaG~pG~GKTt~-al~ia~~~a~-------~g~~Vl~fSlE-ms~~ql~~Rlls~~~--~v~~~~l~~g~Ls~~ 113 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSL-MMNMVLSALN-------DDRGVAVFSLE-MSAEQLALRALSDLT--SINMHDLESGRLDDD 113 (338)
T ss_dssp TTCEEEEEECTTSCHHHH-HHHHHHHHHH-------TTCEEEEEESS-SCHHHHHHHHHHHHH--CCCHHHHHHTCCCHH
T ss_pred CCcEEEEEeCCCCCHHHH-HHHHHHHHHH-------cCCeEEEEeCC-CCHHHHHHHHHHHhh--CCCHHHHhcCCCCHH
Confidence 345688899999999974 4545444432 24456766442 333444444432221 111111111222222
Q ss_pred HHHHHh------cCCcEEEe-----CHHHHHHHHHhccccccceeEEEEechhhhhc
Q 003910 341 QFKELK------AGCEIVIA-----TPGRLIDMLKMKALTMSRVTYLVLDEADRMFD 386 (787)
Q Consensus 341 ~~~~l~------~~~dIIV~-----Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~ 386 (787)
.+..+. ....|.|. |+..|...+.+-......+.+||||-.+.|..
T Consensus 114 e~~~l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyLqlm~~ 170 (338)
T 4a1f_A 114 QWENLAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQLMSG 170 (338)
T ss_dssp HHHHHHHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEEECCCT
T ss_pred HHHHHHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEechHHhcC
Confidence 222221 12445553 34445444432111111689999999997653
No 185
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=84.48 E-value=6.7 Score=39.23 Aligned_cols=54 Identities=15% Similarity=0.108 Sum_probs=29.5
Q ss_pred CccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHH--cCCCEEEEccCCCchhHH
Q 003910 222 RPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIIL--SGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 222 ~pi~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il--~grdvii~a~TGsGKTla 278 (787)
.|-.+|+++.-.+.....+...-.. . -....+..+- -.+.+++++|+|+|||..
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~~~--~-~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl 65 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIVEF--L-KNPSRFHEMGARIPKGVLLVGPPGVGKTHL 65 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHHHH--H-HCHHHHHHTTCCCCSEEEEECCTTSSHHHH
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH--H-HCHHHHHHcCCCCCCeEEEECCCCCCHHHH
Confidence 4556788886666665555432100 0 0011121110 124599999999999964
No 186
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=83.70 E-value=1.1 Score=46.46 Aligned_cols=16 Identities=19% Similarity=0.025 Sum_probs=13.8
Q ss_pred CCEEEEccCCCchhHH
Q 003910 263 RDIIGIAKTGSGKTAA 278 (787)
Q Consensus 263 rdvii~a~TGsGKTla 278 (787)
+.+++.+|+|+|||..
T Consensus 37 ~~lLl~GppGtGKT~l 52 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQ 52 (293)
T ss_dssp SEEEEEECTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4688899999999974
No 187
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=83.47 E-value=2.4 Score=43.89 Aligned_cols=18 Identities=28% Similarity=0.435 Sum_probs=15.5
Q ss_pred cCCCEEEEccCCCchhHH
Q 003910 261 SGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla 278 (787)
.|.-+++++++|+|||..
T Consensus 34 ~G~~~~i~G~~G~GKTTl 51 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTF 51 (296)
T ss_dssp TTCEEEEEESTTSSHHHH
T ss_pred CCeEEEEEeCCCCCHHHH
Confidence 567789999999999974
No 188
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=83.43 E-value=2.4 Score=41.48 Aligned_cols=18 Identities=33% Similarity=0.305 Sum_probs=15.2
Q ss_pred cCCCEEEEccCCCchhHH
Q 003910 261 SGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla 278 (787)
.|.-+++.+++|+|||..
T Consensus 22 ~G~~~~i~G~~GsGKTtl 39 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIF 39 (235)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEEcCCCCCHHHH
Confidence 456789999999999964
No 189
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=83.38 E-value=3.6 Score=41.33 Aligned_cols=71 Identities=24% Similarity=0.325 Sum_probs=53.2
Q ss_pred CCCEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhcCCccEEEEeh-----hhh--ccCCCCC
Q 003910 470 DGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-----VAA--RGLDIKS 538 (787)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-----v~~--rGlDip~ 538 (787)
..++||.++++.-+..+++.+... ++.+..++|+.+...+...+. ...+|+|+|. .+. ..+++..
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~I~v~Tp~~l~~~l~~~~~~~l~~ 186 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALA----KKPHIIIATPGRLIDHLENTKGFNLRA 186 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHH----TCCSEEEECHHHHHHHHHHSTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhc----CCCCEEEECHHHHHHHHHcCCCcCccc
Confidence 457999999999998888877664 788999999988765544332 4679999993 222 3567788
Q ss_pred ccEEEE
Q 003910 539 IKSVVN 544 (787)
Q Consensus 539 v~~VI~ 544 (787)
+++||.
T Consensus 187 ~~~lVi 192 (249)
T 3ber_A 187 LKYLVM 192 (249)
T ss_dssp CCEEEE
T ss_pred cCEEEE
Confidence 888775
No 190
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.34 E-value=1.7 Score=49.07 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=24.9
Q ss_pred cceeEEEEechhhhhcCC--ChHHHHHHhhhcCCCceEEEEeccC
Q 003910 371 SRVTYLVLDEADRMFDLG--FEPQIRSIVGQIRPDRQTLLFSATM 413 (787)
Q Consensus 371 ~~i~~lViDEah~m~~~~--f~~~i~~il~~~~~~~q~ll~SAT~ 413 (787)
....+|||||+|.|.... ....+..++.. ....+|+++++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCC
Confidence 345789999999986532 22344444443 334567777664
No 191
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=83.31 E-value=5.1 Score=42.66 Aligned_cols=94 Identities=20% Similarity=0.258 Sum_probs=64.1
Q ss_pred EecCCCcchHHH----HHHhcCCcCCCCCEEEEecccccHHHHHHHHHHc-----CCceeeccCCCCHHHHHHHHHHhhc
Q 003910 448 HVIPSDAEKLPW----LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK-----GFKAAALHGDKDQASRMEILQKFKS 518 (787)
Q Consensus 448 ~~~~~~~~k~~~----L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~-----g~~v~~lhg~~~~~eR~~~l~~F~~ 518 (787)
...+....|-.. ++..+.......++||.|+++.-+..+++.+... ++.+..++|+.+....... +..
T Consensus 50 v~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~ 126 (391)
T 1xti_A 50 CQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKK 126 (391)
T ss_dssp EECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHH---HHH
T ss_pred EECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHH---Hhc
Confidence 344455566432 2333333333458999999999999998888775 7889999999987665543 445
Q ss_pred CCccEEEEeh-hh-----hccCCCCCccEEEE
Q 003910 519 GVYHVLIATD-VA-----ARGLDIKSIKSVVN 544 (787)
Q Consensus 519 G~~~VLVaT~-v~-----~rGlDip~v~~VI~ 544 (787)
+..+|+|+|. .+ ...+++..+.+||.
T Consensus 127 ~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vVi 158 (391)
T 1xti_A 127 NCPHIVVGTPGRILALARNKSLNLKHIKHFIL 158 (391)
T ss_dssp SCCSEEEECHHHHHHHHHTTSSCCTTCSEEEE
T ss_pred CCCCEEEECHHHHHHHHHcCCccccccCEEEE
Confidence 7789999993 22 23466778888775
No 192
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=83.29 E-value=2.3 Score=51.31 Aligned_cols=16 Identities=38% Similarity=0.499 Sum_probs=14.4
Q ss_pred CCEEEEccCCCchhHH
Q 003910 263 RDIIGIAKTGSGKTAA 278 (787)
Q Consensus 263 rdvii~a~TGsGKTla 278 (787)
.++++++++|+|||..
T Consensus 192 ~~vlL~G~pG~GKT~l 207 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAI 207 (854)
T ss_dssp CCCEEEECTTSCHHHH
T ss_pred CceEEEcCCCCCHHHH
Confidence 4799999999999975
No 193
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=83.02 E-value=3.5 Score=40.96 Aligned_cols=73 Identities=23% Similarity=0.301 Sum_probs=46.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhcCCccEEEEeh-----hhhc-cCCCCC
Q 003910 469 DDGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-----VAAR-GLDIKS 538 (787)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-----v~~r-GlDip~ 538 (787)
...++||.++++.-+..+++.+... ++.+..++|+..... .+..+..+..+|+|+|. .+.+ .+++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 3458999999999999998888765 467788888765433 23445567789999993 3333 366777
Q ss_pred ccEEEE
Q 003910 539 IKSVVN 544 (787)
Q Consensus 539 v~~VI~ 544 (787)
+.+||.
T Consensus 174 ~~~lVi 179 (237)
T 3bor_A 174 IKMFVL 179 (237)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 888775
No 194
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=82.66 E-value=2.8 Score=46.85 Aligned_cols=52 Identities=19% Similarity=0.164 Sum_probs=38.8
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhh
Q 003910 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAK 323 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~ 323 (787)
.+....+.+-||||||++ ++.+..- . +..+|||+|+..+|.|++++++.|+.
T Consensus 13 ~~~~~~l~g~~gs~ka~~--~a~l~~~--------~-~~p~lvv~~~~~~A~~l~~~l~~~~~ 64 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATL--VAEIAER--------H-AGPVVLIAPDMQNALRLHDEISQFTD 64 (483)
T ss_dssp TTCEEEEECCCTTHHHHH--HHHHHHH--------S-SSCEEEEESSHHHHHHHHHHHHHTCS
T ss_pred CCCeEEEeCCCchHHHHH--HHHHHHH--------h-CCCEEEEeCCHHHHHHHHHHHHhhCC
Confidence 355788999999999975 2222221 1 22378999999999999999999864
No 195
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=82.49 E-value=4.9 Score=41.95 Aligned_cols=43 Identities=7% Similarity=0.117 Sum_probs=24.2
Q ss_pred ccceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEeccCc
Q 003910 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMP 414 (787)
Q Consensus 370 l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~ 414 (787)
.....++||||||+|-... ...+.+.++.-++...+| +.++-+
T Consensus 80 ~~~~kvviIdead~lt~~a-~naLLk~LEep~~~t~fI-l~t~~~ 122 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQA-ANAFLKALEEPPEYAVIV-LNTRRW 122 (305)
T ss_dssp SSSSEEEEETTGGGBCHHH-HHHTHHHHHSCCTTEEEE-EEESCG
T ss_pred cCCceEEEeccHHHhCHHH-HHHHHHHHhCCCCCeEEE-EEECCh
Confidence 3467899999999975322 223445555433344444 444433
No 196
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=82.45 E-value=5.9 Score=38.01 Aligned_cols=72 Identities=18% Similarity=0.233 Sum_probs=51.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHHc-----CCceeeccCCCCHHHHHHHHHHhhcCCccEEEEeh-h----hhc-cCCCC
Q 003910 469 DDGDVLVFASKKTTVDEIESQLAQK-----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-V----AAR-GLDIK 537 (787)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~-----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-v----~~r-GlDip 537 (787)
...++||.|+++.-+..+++.+... ++.+..++|+.+..+.... + ....+|+|+|. . +.+ .+++.
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~~~l~~~~~~~~~~~~ 145 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATPGRILDLIKKGVAKVD 145 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECHHHHHHHHHTTCSCCT
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCHHHHHHHHHcCCcCcc
Confidence 3458999999999999888888664 5788899999887554322 2 34678999994 2 222 35677
Q ss_pred CccEEEE
Q 003910 538 SIKSVVN 544 (787)
Q Consensus 538 ~v~~VI~ 544 (787)
.+++||.
T Consensus 146 ~~~~lVi 152 (206)
T 1vec_A 146 HVQMIVL 152 (206)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 7888775
No 197
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=82.37 E-value=2.6 Score=40.48 Aligned_cols=71 Identities=17% Similarity=0.263 Sum_probs=43.4
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHH---HHHHhc-CCcEEEeCHHHHHHHHHhccccccce
Q 003910 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ---FKELKA-GCEIVIATPGRLIDMLKMKALTMSRV 373 (787)
Q Consensus 298 ~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~---~~~l~~-~~dIIV~Tp~~L~~~l~~~~~~l~~i 373 (787)
+.++||.|+++..+..++..++.. ++.+..++|+.+..+. +..+.. ...|+|+|. .+ ...+++..+
T Consensus 46 ~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~-~~Gldi~~~ 115 (185)
T 2jgn_A 46 DSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VA-ARGLDISNV 115 (185)
T ss_dssp CSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEEEEEC------------CCCSB
T ss_pred CCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-----hh-hcCCCcccC
Confidence 566999999999998887777664 7889999998765433 223332 478999992 22 224467778
Q ss_pred eEEEE
Q 003910 374 TYLVL 378 (787)
Q Consensus 374 ~~lVi 378 (787)
.+||.
T Consensus 116 ~~VI~ 120 (185)
T 2jgn_A 116 KHVIN 120 (185)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 87776
No 198
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=82.12 E-value=11 Score=40.84 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=17.9
Q ss_pred HHHHHH-----cCCCEEEEccCCCchhHH
Q 003910 255 ALPIIL-----SGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 255 ai~~il-----~grdvii~a~TGsGKTla 278 (787)
.|..++ .|.-++|+++.|+|||..
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTL 194 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQL 194 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHH
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHH
Confidence 355555 345689999999999974
No 199
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=82.10 E-value=8 Score=40.07 Aligned_cols=53 Identities=19% Similarity=0.290 Sum_probs=28.0
Q ss_pred cceeEEEEechhhhh-cCCChHHHHHHhhhcCCCceEEEEeccCcHHHHHHHHH
Q 003910 371 SRVTYLVLDEADRMF-DLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLARE 423 (787)
Q Consensus 371 ~~i~~lViDEah~m~-~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~v~~l~~~ 423 (787)
..+++||||++=.+. +......+..+...+.++.-++.+.++...+....++.
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~ 232 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARA 232 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHH
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcHHHHHHHHH
Confidence 467899999994432 11112334444444555555556777644333333333
No 200
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=81.28 E-value=4.9 Score=39.99 Aligned_cols=71 Identities=15% Similarity=0.223 Sum_probs=53.4
Q ss_pred CCCEEEEecccccHHHHHHHHHH----cCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEeh-----hhh-ccCCCCCc
Q 003910 470 DGDVLVFASKKTTVDEIESQLAQ----KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-----VAA-RGLDIKSI 539 (787)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~----~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-----v~~-rGlDip~v 539 (787)
..++||.|+++.-+..+.+.+.. .++.+..++|+.+.......+.. ..+|+|+|. .+. ..+++..+
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCcccc
Confidence 45799999999988888776655 38899999999988766555442 478999994 222 34678888
Q ss_pred cEEEE
Q 003910 540 KSVVN 544 (787)
Q Consensus 540 ~~VI~ 544 (787)
.+||.
T Consensus 178 ~~lVi 182 (242)
T 3fe2_A 178 TYLVL 182 (242)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 88875
No 201
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=81.11 E-value=6 Score=41.28 Aligned_cols=18 Identities=11% Similarity=0.003 Sum_probs=15.7
Q ss_pred cCCCEEEEccCCCchhHH
Q 003910 261 SGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla 278 (787)
.++.+++.++.|+|||..
T Consensus 30 ~~~~v~i~G~~G~GKT~L 47 (350)
T 2qen_A 30 NYPLTLLLGIRRVGKSSL 47 (350)
T ss_dssp HCSEEEEECCTTSSHHHH
T ss_pred cCCeEEEECCCcCCHHHH
Confidence 467899999999999974
No 202
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=80.86 E-value=5.2 Score=41.59 Aligned_cols=18 Identities=33% Similarity=0.521 Sum_probs=15.2
Q ss_pred cCCCEEEEccCCCchhHH
Q 003910 261 SGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla 278 (787)
.++-+++++++|+|||..
T Consensus 104 ~g~vi~lvG~~GsGKTTl 121 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTT 121 (296)
T ss_dssp CSSEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 456788999999999975
No 203
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=80.62 E-value=11 Score=42.47 Aligned_cols=78 Identities=14% Similarity=0.151 Sum_probs=56.9
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHH---Hh-cCCcEEEeCHHHHHHHHHhccccccc
Q 003910 297 EGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE---LK-AGCEIVIATPGRLIDMLKMKALTMSR 372 (787)
Q Consensus 297 ~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~---l~-~~~dIIV~Tp~~L~~~l~~~~~~l~~ 372 (787)
.+.++||.|+|+.-|..+++.+.+... .++.+..++|+.+....... +. ...+|||||. .+ ...+++..
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~-~~GiDip~ 410 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VG-ARGMDFPN 410 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GG-TSSCCCTT
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----hh-hcCCCccc
Confidence 356799999999999999988887654 26888899998876554322 22 3489999993 33 34567788
Q ss_pred eeEEEEech
Q 003910 373 VTYLVLDEA 381 (787)
Q Consensus 373 i~~lViDEa 381 (787)
+++||.-..
T Consensus 411 v~~VI~~~~ 419 (563)
T 3i5x_A 411 VHEVLQIGV 419 (563)
T ss_dssp CCEEEEESC
T ss_pred CCEEEEECC
Confidence 888886543
No 204
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=80.42 E-value=19 Score=37.46 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=13.9
Q ss_pred CCCEEEEccCCCchhHH
Q 003910 262 GRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 262 grdvii~a~TGsGKTla 278 (787)
++-+++++++|+|||..
T Consensus 104 ~~vi~ivG~~GsGKTTl 120 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTS 120 (306)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CeEEEEEcCCCChHHHH
Confidence 34578899999999975
No 205
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=80.41 E-value=4.7 Score=39.86 Aligned_cols=70 Identities=17% Similarity=0.230 Sum_probs=49.6
Q ss_pred CCCEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhcCCccEEEEeh-hh----hc--cCCCCC
Q 003910 470 DGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VA----AR--GLDIKS 538 (787)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-v~----~r--GlDip~ 538 (787)
..++||.|+++.-+..+++.+... ++.+..++|+.+.......+ ...+|+|+|. .+ .+ .+++..
T Consensus 97 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~~ 171 (236)
T 2pl3_A 97 GLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHATD 171 (236)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCccccc
Confidence 458999999999999998888775 37889999988765444333 3678999994 22 22 366677
Q ss_pred ccEEEE
Q 003910 539 IKSVVN 544 (787)
Q Consensus 539 v~~VI~ 544 (787)
+++||.
T Consensus 172 ~~~lVi 177 (236)
T 2pl3_A 172 LQMLVL 177 (236)
T ss_dssp CCEEEE
T ss_pred ccEEEE
Confidence 777774
No 206
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=80.40 E-value=1.1 Score=48.27 Aligned_cols=25 Identities=12% Similarity=0.166 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHcCCCccHHHHHHH
Q 003910 581 RFAGELVNSLIAAGQNVSMELMDLA 605 (787)
Q Consensus 581 ~~~~~l~~~l~~~~~~vp~~l~~~a 605 (787)
..+..+...|...-...+..|..+.
T Consensus 232 ~~l~~i~~~il~~y~~~~~~L~~i~ 256 (358)
T 2pk2_A 232 ELLDELTHEFLQILEKTPNRLKRIW 256 (358)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccccchh
Confidence 3344444444444444444444443
No 207
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=80.10 E-value=2.2 Score=42.41 Aligned_cols=44 Identities=11% Similarity=0.081 Sum_probs=26.7
Q ss_pred cceeEEEEechhhhhc-----CCChHHHHHHhhhcCCCceEEEEeccCc
Q 003910 371 SRVTYLVLDEADRMFD-----LGFEPQIRSIVGQIRPDRQTLLFSATMP 414 (787)
Q Consensus 371 ~~i~~lViDEah~m~~-----~~f~~~i~~il~~~~~~~q~ll~SAT~~ 414 (787)
...++||+||.-.+++ ......+..++..+...-.+++++.-..
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~ 182 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAP 182 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 4678999999998875 3333346666665543333455544433
No 208
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=80.08 E-value=2 Score=48.60 Aligned_cols=59 Identities=19% Similarity=0.351 Sum_probs=55.3
Q ss_pred CCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEeh
Q 003910 470 DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD 528 (787)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~ 528 (787)
.+.+||.++++.-+....+.|...++.+..+|+..+..++..++..+..|..+||++|.
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 57899999999999999999999999999999999999999999999999999999994
No 209
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=79.77 E-value=6.7 Score=42.17 Aligned_cols=72 Identities=17% Similarity=0.234 Sum_probs=53.4
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHH---Hhc-CCcEEEeCHHHHHHHHHhccccccc
Q 003910 297 EGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE---LKA-GCEIVIATPGRLIDMLKMKALTMSR 372 (787)
Q Consensus 297 ~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~---l~~-~~dIIV~Tp~~L~~~l~~~~~~l~~ 372 (787)
.+.++||.|+++..+..+++.+.+. ++.+..++|+.+..+.... +.. ...|+|||. .+. ..+++..
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~-~Gidip~ 344 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAA-RGLDISN 344 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHH-TTSCCCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhh-cCCCccc
Confidence 4567999999999999888777764 7889999998876544322 232 478999994 333 3567888
Q ss_pred eeEEEE
Q 003910 373 VTYLVL 378 (787)
Q Consensus 373 i~~lVi 378 (787)
+++||.
T Consensus 345 v~~Vi~ 350 (417)
T 2i4i_A 345 VKHVIN 350 (417)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 888875
No 210
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=78.97 E-value=3.5 Score=42.17 Aligned_cols=28 Identities=21% Similarity=0.358 Sum_probs=19.9
Q ss_pred HHcCCCEEEEccCCCchhHHHHHHHHHHH
Q 003910 259 ILSGRDIIGIAKTGSGKTAAFVLPMIVHI 287 (787)
Q Consensus 259 il~grdvii~a~TGsGKTla~llp~l~~l 287 (787)
+..|.-+++.+++|+|||.. ++.++..+
T Consensus 27 l~~G~i~~i~G~~GsGKTtl-~~~l~~~~ 54 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSML-ALQLAAQI 54 (279)
T ss_dssp EETTSEEEEEESTTSSHHHH-HHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHH-HHHHHHHH
Confidence 44677899999999999975 33333333
No 211
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=78.66 E-value=8.4 Score=36.86 Aligned_cols=71 Identities=20% Similarity=0.219 Sum_probs=52.3
Q ss_pred CCCEEEEecccccHHHHHHHHHHc--CCceeeccCCCCHHHHHHHHHHhhcCCccEEEEeh-----hhh-ccCCCCCccE
Q 003910 470 DGDVLVFASKKTTVDEIESQLAQK--GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-----VAA-RGLDIKSIKS 541 (787)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~--g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-----v~~-rGlDip~v~~ 541 (787)
..++||.|+++.-+..+++.+... .+.+..++|+.........+. ...+|+|+|. .+. ..+++..+++
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~~ 147 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVEV 147 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCSE
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhceE
Confidence 458999999999999999999876 467888999887654443332 2578999994 222 3467778888
Q ss_pred EEE
Q 003910 542 VVN 544 (787)
Q Consensus 542 VI~ 544 (787)
||.
T Consensus 148 iVi 150 (207)
T 2gxq_A 148 AVL 150 (207)
T ss_dssp EEE
T ss_pred EEE
Confidence 775
No 212
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=78.46 E-value=2.3 Score=43.98 Aligned_cols=15 Identities=33% Similarity=0.499 Sum_probs=13.7
Q ss_pred CEEEEccCCCchhHH
Q 003910 264 DIIGIAKTGSGKTAA 278 (787)
Q Consensus 264 dvii~a~TGsGKTla 278 (787)
++++++|+|+|||..
T Consensus 40 ~~ll~G~~G~GKt~l 54 (319)
T 2chq_A 40 HLLFSGPPGTGKTAT 54 (319)
T ss_dssp CEEEESSSSSSHHHH
T ss_pred eEEEECcCCcCHHHH
Confidence 699999999999975
No 213
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=78.40 E-value=14 Score=41.89 Aligned_cols=79 Identities=14% Similarity=0.146 Sum_probs=57.4
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHH---Hh-cCCcEEEeCHHHHHHHHHhccccccc
Q 003910 297 EGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE---LK-AGCEIVIATPGRLIDMLKMKALTMSR 372 (787)
Q Consensus 297 ~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~---l~-~~~dIIV~Tp~~L~~~l~~~~~~l~~ 372 (787)
.+.++||.|+|+..|..+++.+.+... .++.+..++|+.+..+.... +. ....|||||. .+ ...+++..
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~-~~GiDip~ 359 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VG-ARGMDFPN 359 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GG-TSSCCCTT
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hh-hcCCCccc
Confidence 356799999999999999988887654 26888889998876554322 33 3589999993 32 34567788
Q ss_pred eeEEEEechh
Q 003910 373 VTYLVLDEAD 382 (787)
Q Consensus 373 i~~lViDEah 382 (787)
+++||.-..-
T Consensus 360 v~~VI~~~~p 369 (579)
T 3sqw_A 360 VHEVLQIGVP 369 (579)
T ss_dssp CCEEEEESCC
T ss_pred CCEEEEcCCC
Confidence 8888865543
No 214
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=78.36 E-value=6.7 Score=38.22 Aligned_cols=93 Identities=15% Similarity=0.156 Sum_probs=55.7
Q ss_pred EEecCCCcchHHH-H---HHhcCCcCCCCCEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhc
Q 003910 447 VHVIPSDAEKLPW-L---LEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKS 518 (787)
Q Consensus 447 ~~~~~~~~~k~~~-L---~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~ 518 (787)
+...+....|-.. + +..+.......++||.++++.-+..+.+.+... ++.+..++|+.+..+.... +.
T Consensus 55 lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~- 130 (224)
T 1qde_A 55 LAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR- 130 (224)
T ss_dssp EEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT-
T ss_pred EEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC-
Confidence 3444555666543 2 333333334568999999999999888887764 6788999998876544332 22
Q ss_pred CCccEEEEehh-h-----hccCCCCCccEEEE
Q 003910 519 GVYHVLIATDV-A-----ARGLDIKSIKSVVN 544 (787)
Q Consensus 519 G~~~VLVaT~v-~-----~rGlDip~v~~VI~ 544 (787)
..+|+|+|.- + ...+++..+.+||.
T Consensus 131 -~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iVi 161 (224)
T 1qde_A 131 -DAQIVVGTPGRVFDNIQRRRFRTDKIKMFIL 161 (224)
T ss_dssp -TCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred -CCCEEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 3789999942 1 23566777777775
No 215
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=78.33 E-value=4.2 Score=42.40 Aligned_cols=71 Identities=18% Similarity=0.297 Sum_probs=51.9
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHH---hc-CCcEEEeCHHHHHHHHHhccccccce
Q 003910 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKEL---KA-GCEIVIATPGRLIDMLKMKALTMSRV 373 (787)
Q Consensus 298 ~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l---~~-~~dIIV~Tp~~L~~~l~~~~~~l~~i 373 (787)
+..+||.|+|+.-+..+++.+... ++.+..++|+.+..++...+ .. ..+|+||| +.+ ...+++..+
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT-----~va-~~Gidi~~v 97 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVAT-----DVA-ARGLDIPQV 97 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEEC-----STT-TCSTTCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEe-----chh-hcCccccce
Confidence 456899999999988877766554 88999999998866543333 23 48899999 333 345677888
Q ss_pred eEEEE
Q 003910 374 TYLVL 378 (787)
Q Consensus 374 ~~lVi 378 (787)
.+||.
T Consensus 98 ~~VI~ 102 (300)
T 3i32_A 98 DLVVH 102 (300)
T ss_dssp SEEEE
T ss_pred eEEEE
Confidence 88875
No 216
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=76.75 E-value=6.1 Score=46.74 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=15.0
Q ss_pred CCCEEEEccCCCchhHH
Q 003910 262 GRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 262 grdvii~a~TGsGKTla 278 (787)
..++++++++|+|||..
T Consensus 207 ~~~vlL~G~~GtGKT~l 223 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAI 223 (758)
T ss_dssp SCEEEEECCTTSSHHHH
T ss_pred CCCeEEEcCCCCCHHHH
Confidence 46799999999999975
No 217
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=76.27 E-value=2.6 Score=54.77 Aligned_cols=44 Identities=25% Similarity=0.231 Sum_probs=30.1
Q ss_pred HHHHHc------CCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCc
Q 003910 256 LPIILS------GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPT 307 (787)
Q Consensus 256 i~~il~------grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~Pt 307 (787)
+..++. ++.+++++|+|+|||..++..+.... ..+.+++++...
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~--------~~G~~v~Fi~~e 1464 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ--------REGKTCAFIDAE 1464 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHH--------TTTCCEEEECTT
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHH--------HcCCcEEEEEcc
Confidence 566665 68999999999999986444333332 235667877655
No 218
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=76.07 E-value=4.5 Score=49.86 Aligned_cols=74 Identities=11% Similarity=0.221 Sum_probs=57.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHHc----CC----ceeeccCCCCHHHHHHHHHHhhcCCccEEEEeh-hhhccCC-CCC
Q 003910 469 DDGDVLVFASKKTTVDEIESQLAQK----GF----KAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VAARGLD-IKS 538 (787)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~----g~----~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-v~~rGlD-ip~ 538 (787)
...++||.++++.-+..+++.|... ++ .+..+||+.+..++...++.+.. .+|||+|. .+..-+. +..
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 3468999999999999888888753 56 78999999999888888888877 89999994 3332222 556
Q ss_pred ccEEEE
Q 003910 539 IKSVVN 544 (787)
Q Consensus 539 v~~VI~ 544 (787)
+++||.
T Consensus 176 l~~lVi 181 (1054)
T 1gku_B 176 FDFIFV 181 (1054)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777774
No 219
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=75.73 E-value=3.3 Score=47.09 Aligned_cols=25 Identities=24% Similarity=0.215 Sum_probs=18.5
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHH
Q 003910 261 SGRDIIGIAKTGSGKTAAFVLPMIVHI 287 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla~llp~l~~l 287 (787)
.+..+++.+|+|+|||.. +-++..+
T Consensus 107 ~g~~vll~Gp~GtGKTtl--ar~ia~~ 131 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSL--AKSIAKS 131 (543)
T ss_dssp CSCEEEEESSSSSSHHHH--HHHHHHH
T ss_pred CCCEEEEECCCCCCHHHH--HHHHHHh
Confidence 467899999999999974 3344444
No 220
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=74.94 E-value=13 Score=39.35 Aligned_cols=76 Identities=18% Similarity=0.304 Sum_probs=55.8
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHH---HHhc-CCcEEEeCHHHHHHHHHhccccccc
Q 003910 297 EGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK---ELKA-GCEIVIATPGRLIDMLKMKALTMSR 372 (787)
Q Consensus 297 ~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~---~l~~-~~dIIV~Tp~~L~~~l~~~~~~l~~ 372 (787)
.+.++||.|+++..+..+++.++.. ++.+..++|+.+..+... .+.. ...|+|||. .+ ...+++..
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidip~ 311 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VL-ARGIDIPT 311 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GG-SSSCCCTT
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hh-hcCCCccc
Confidence 3567999999999999888777765 788899999887654433 2333 478999993 22 34567888
Q ss_pred eeEEEEechh
Q 003910 373 VTYLVLDEAD 382 (787)
Q Consensus 373 i~~lViDEah 382 (787)
+++||.-...
T Consensus 312 ~~~Vi~~~~p 321 (395)
T 3pey_A 312 VSMVVNYDLP 321 (395)
T ss_dssp EEEEEESSCC
T ss_pred CCEEEEcCCC
Confidence 9999875554
No 221
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=74.93 E-value=3.5 Score=40.89 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=17.0
Q ss_pred cCCCEEEEccCCCchhHHHHHHHH
Q 003910 261 SGRDIIGIAKTGSGKTAAFVLPMI 284 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla~llp~l 284 (787)
.|.-++++|++|+|||.. ++-++
T Consensus 29 ~G~l~~i~G~pG~GKT~l-~l~~~ 51 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTF-AAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHH-HHHHH
T ss_pred CCeEEEEEeCCCCCHHHH-HHHHH
Confidence 346789999999999964 44433
No 222
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=74.80 E-value=8.3 Score=41.25 Aligned_cols=71 Identities=17% Similarity=0.207 Sum_probs=53.3
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHH---Hhc-CCcEEEeCHHHHHHHHHhccccccce
Q 003910 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE---LKA-GCEIVIATPGRLIDMLKMKALTMSRV 373 (787)
Q Consensus 298 ~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~---l~~-~~dIIV~Tp~~L~~~l~~~~~~l~~i 373 (787)
+.++||.|+++..+..+++.+.+. ++.+..++|+.+..+.... +.. ...|+|||. .+ ...+++..+
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidip~~ 335 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VC-ARGIDVEQV 335 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GG-TSSCCCTTE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----cc-ccCCCccCC
Confidence 457999999999999888887765 7888999999876554332 333 478999993 22 345678889
Q ss_pred eEEEE
Q 003910 374 TYLVL 378 (787)
Q Consensus 374 ~~lVi 378 (787)
++||.
T Consensus 336 ~~Vi~ 340 (412)
T 3fht_A 336 SVVIN 340 (412)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 98885
No 223
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=74.77 E-value=11 Score=36.50 Aligned_cols=18 Identities=28% Similarity=0.182 Sum_probs=15.0
Q ss_pred cCCCEEEEccCCCchhHH
Q 003910 261 SGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla 278 (787)
.|.-+.+++++|+|||..
T Consensus 24 ~G~~~~l~G~nGsGKSTl 41 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQL 41 (231)
T ss_dssp SSEEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 446688999999999974
No 224
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=74.58 E-value=7.2 Score=42.42 Aligned_cols=91 Identities=21% Similarity=0.243 Sum_probs=62.0
Q ss_pred ecCCCcchHHHHHHhcCCc--CCCCCEEEEecccccHHHHHHHHHHc-CC---ceeeccCCCCHHHHHHHHHHhhcCCcc
Q 003910 449 VIPSDAEKLPWLLEKLPGM--IDDGDVLVFASKKTTVDEIESQLAQK-GF---KAAALHGDKDQASRMEILQKFKSGVYH 522 (787)
Q Consensus 449 ~~~~~~~k~~~L~~~L~~~--~~~~kvLVF~~s~~~a~~l~~~L~~~-g~---~v~~lhg~~~~~eR~~~l~~F~~G~~~ 522 (787)
..+....|-...+..+... ....++||.|+++.-+..+.+.|.+. +. .+..+||+....++..... ..+
T Consensus 29 ~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ 103 (494)
T 1wp9_A 29 VLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAK 103 (494)
T ss_dssp ECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCS
T ss_pred EcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCC
Confidence 3444556654433332221 24569999999999999888888775 55 8999999999887655443 468
Q ss_pred EEEEeh-hhh-----ccCCCCCccEEEE
Q 003910 523 VLIATD-VAA-----RGLDIKSIKSVVN 544 (787)
Q Consensus 523 VLVaT~-v~~-----rGlDip~v~~VI~ 544 (787)
|+|+|. .+. ..+.+..+++||.
T Consensus 104 ivv~T~~~l~~~~~~~~~~~~~~~~vIi 131 (494)
T 1wp9_A 104 VIVATPQTIENDLLAGRISLEDVSLIVF 131 (494)
T ss_dssp EEEECHHHHHHHHHTTSCCTTSCSEEEE
T ss_pred EEEecHHHHHHHHhcCCcchhhceEEEE
Confidence 999993 332 2456777787775
No 225
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=74.50 E-value=3.9 Score=39.93 Aligned_cols=72 Identities=18% Similarity=0.257 Sum_probs=49.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHHc--------CCceeeccCCCCHHHHHHHHHHhhcCCccEEEEeh-----hhhc-cC
Q 003910 469 DDGDVLVFASKKTTVDEIESQLAQK--------GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-----VAAR-GL 534 (787)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~--------g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-----v~~r-Gl 534 (787)
...++||.|+++.-+..+++.+... ++.+..++|+.+..... +.+ ....+|+|+|. .+.. .+
T Consensus 71 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~-~~~~~Iiv~Tp~~l~~~l~~~~~ 146 (219)
T 1q0u_A 71 AEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL---EKL-NVQPHIVIGTPGRINDFIREQAL 146 (219)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTT---CCC-SSCCSEEEECHHHHHHHHHTTCC
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHH---HHc-CCCCCEEEeCHHHHHHHHHcCCC
Confidence 3458999999999998888877654 57888899987644321 111 23578999993 2222 35
Q ss_pred CCCCccEEEE
Q 003910 535 DIKSIKSVVN 544 (787)
Q Consensus 535 Dip~v~~VI~ 544 (787)
++..+++||.
T Consensus 147 ~~~~~~~lVi 156 (219)
T 1q0u_A 147 DVHTAHILVV 156 (219)
T ss_dssp CGGGCCEEEE
T ss_pred CcCcceEEEE
Confidence 6777777775
No 226
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=74.27 E-value=7.1 Score=40.99 Aligned_cols=25 Identities=24% Similarity=0.169 Sum_probs=17.8
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHH
Q 003910 261 SGRDIIGIAKTGSGKTAAFVLPMIVH 286 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla~llp~l~~ 286 (787)
.|.-+++.+++|+|||.. ++.++..
T Consensus 106 ~G~i~~i~G~~GsGKT~l-a~~la~~ 130 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQL-CHQLSVN 130 (324)
T ss_dssp TTSEEEEEESTTSSHHHH-HHHHHHH
T ss_pred CCcEEEEECCCCCCHhHH-HHHHHHH
Confidence 346789999999999974 3444333
No 227
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=74.24 E-value=60 Score=37.52 Aligned_cols=78 Identities=15% Similarity=0.326 Sum_probs=58.1
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHH---Hhc-CCcEEEeCHHHHHHHHHhccccccc
Q 003910 297 EGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE---LKA-GCEIVIATPGRLIDMLKMKALTMSR 372 (787)
Q Consensus 297 ~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~---l~~-~~dIIV~Tp~~L~~~l~~~~~~l~~ 372 (787)
.+.++||.|+|+..+..+.+.+... ++.+.+++++....+.... +.. ..+|+|||. .+ ...+++..
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l-~~GlDip~ 513 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LL-REGLDIPE 513 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CC-STTCCCTT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hh-hCCcccCC
Confidence 3568999999999998887777665 7888888888765544333 333 489999993 22 34567889
Q ss_pred eeEEEEechhhh
Q 003910 373 VTYLVLDEADRM 384 (787)
Q Consensus 373 i~~lViDEah~m 384 (787)
+++||+-+++..
T Consensus 514 v~lVi~~d~d~~ 525 (661)
T 2d7d_A 514 VSLVAILDADKE 525 (661)
T ss_dssp EEEEEETTTTCC
T ss_pred CCEEEEeCcccc
Confidence 999999998864
No 228
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=74.19 E-value=1.8 Score=41.53 Aligned_cols=121 Identities=12% Similarity=0.185 Sum_probs=71.9
Q ss_pred CcHHHHHHHHHHHcCC--CEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhc
Q 003910 248 PTSIQCQALPIILSGR--DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSH 325 (787)
Q Consensus 248 ptp~Q~~ai~~il~gr--dvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~ 325 (787)
..+-|..++..++..+ -.++.+.-|++||...+.-++... +..|..+.||+|+..-.....+..
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a-------~~~Gr~V~vLAp~~~s~~~l~~~~------- 100 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMA-------REQGREVQIIAADRRSQMNMKQDE------- 100 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHH-------HHTTCCEEEECSTTHHHHHHSCTT-------
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHH-------HhcCeEEEEEcCchHHHHHHHhhc-------
Confidence 3467888998887654 466788999999988544443332 245788999999977665432221
Q ss_pred CceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhhhhcCCChHHHHHHhhhc-CCCc
Q 003910 326 GIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQI-RPDR 404 (787)
Q Consensus 326 ~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~~-~~~~ 404 (787)
++.-. ++ +. ..+......|..=++||||||-+|.- ..+..++... ..+.
T Consensus 101 ~l~~~--------------------t~-t~-----~~ll~~~~~~tp~s~lIVD~AekLS~----kE~~~Lld~A~~~na 150 (189)
T 2l8b_A 101 RLSGE--------------------LI-TG-----RRQLLEGMAFTPGSTVIVDQGEKLSL----KETLTLLDGAARHNV 150 (189)
T ss_dssp TCSSC--------------------SS-ST-----TTTTTTSCCCCCCCEEEEEESSSHHH----HHHHHHHHHHHHTTC
T ss_pred CcCcc--------------------ee-eh-----hhhhcCCCCCCCCCEEEEechhhcCH----HHHHHHHHHHHhcCC
Confidence 11110 00 11 11122233334455899999998763 3444444432 3567
Q ss_pred eEEEEecc
Q 003910 405 QTLLFSAT 412 (787)
Q Consensus 405 q~ll~SAT 412 (787)
|+||+--+
T Consensus 151 qvvll~~~ 158 (189)
T 2l8b_A 151 QVLITDSG 158 (189)
T ss_dssp CEEEEESS
T ss_pred EEEEeCCc
Confidence 88887665
No 229
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=74.14 E-value=5.7 Score=38.94 Aligned_cols=72 Identities=18% Similarity=0.353 Sum_probs=48.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHHc---CCceeeccCCCCHHHHHHHHHHhhcCCccEEEEeh-hh-----hccCCCCCc
Q 003910 469 DDGDVLVFASKKTTVDEIESQLAQK---GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VA-----ARGLDIKSI 539 (787)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~---g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-v~-----~rGlDip~v 539 (787)
...++||.++++.-+..+++.+... ++.+..++|+.+...+...+ .. ..+|+|+|. .+ ...+++..+
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI---SK-GVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHH---HS-CCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHh---cC-CCCEEEECHHHHHHHHHcCCcCcccc
Confidence 3457999999999999999998874 67888999988765443333 23 478999993 11 135677888
Q ss_pred cEEEE
Q 003910 540 KSVVN 544 (787)
Q Consensus 540 ~~VI~ 544 (787)
++||.
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 88775
No 230
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=74.09 E-value=25 Score=34.84 Aligned_cols=113 Identities=13% Similarity=0.085 Sum_probs=66.9
Q ss_pred CCEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhcCCccEEEEeh-hh----h-ccCCCCCcc
Q 003910 471 GDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VA----A-RGLDIKSIK 540 (787)
Q Consensus 471 ~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-v~----~-rGlDip~v~ 540 (787)
.++||.|+++.-+..+.+.+... ++.+..++|+.+.......+ ....+|+|+|. .+ . ..+++..++
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~ 176 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFCK 176 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhCC
Confidence 58999999999999888887664 56788899988765443332 24578999994 22 2 235777788
Q ss_pred EEEEecCC----C-CHHHHHHHhhccCCCCCCCcEEEEEEccccHHHHHHHHH
Q 003910 541 SVVNFDIA----R-DMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVN 588 (787)
Q Consensus 541 ~VI~~d~p----~-s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~ 588 (787)
+||.=... + ....+...+.+..... ....-+++++..-...+..+.+
T Consensus 177 ~lViDEah~~~~~~~~~~~~~i~~~~~~~~-~~~~q~l~~SAT~~~~~~~~~~ 228 (253)
T 1wrb_A 177 YIVLDEADRMLDMGFEPQIRKIIEESNMPS-GINRQTLMFSATFPKEIQKLAA 228 (253)
T ss_dssp EEEEETHHHHHHTTCHHHHHHHHHSSCCCC-GGGCEEEEEESSCCHHHHHHHH
T ss_pred EEEEeCHHHHHhCchHHHHHHHHhhccCCC-CCCcEEEEEEEeCCHHHHHHHH
Confidence 87753221 1 1223333334332221 1244566666654444444443
No 231
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=73.87 E-value=6.6 Score=41.07 Aligned_cols=51 Identities=14% Similarity=0.015 Sum_probs=30.0
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHH
Q 003910 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKK 320 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~ 320 (787)
.|.-++++|++|+|||.. ++-++.++..+ +..++++..- +-..|+...+..
T Consensus 67 ~G~l~li~G~pG~GKTtl-~l~ia~~~a~~-------g~~vl~~slE-~s~~~l~~R~~~ 117 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAF-ALKQAKNMSDN-------DDVVNLHSLE-MGKKENIKRLIV 117 (315)
T ss_dssp TTCEEEEECCTTSSHHHH-HHHHHHHHHTT-------TCEEEEEESS-SCHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHH-HHHHHHHHHHc-------CCeEEEEECC-CCHHHHHHHHHH
Confidence 446689999999999964 44444444332 2446766532 334445444443
No 232
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=73.79 E-value=3.1 Score=46.03 Aligned_cols=112 Identities=12% Similarity=0.039 Sum_probs=54.5
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCC-----
Q 003910 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGM----- 336 (787)
Q Consensus 262 grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~----- 336 (787)
|.-++++|++|+|||.. ++-++.++..+ +..++++..- +-..|+...+..... ++....+..|.
T Consensus 197 G~liiIaG~pG~GKTtl-al~ia~~~a~~-------g~~vl~fSlE-ms~~ql~~R~~~~~~--~i~~~~l~~g~~~l~~ 265 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAF-ALKQAKNMSDN-------DDVVNLHSLE-MGKKENIKRLIVTAG--SINAQKIKAARRDFAS 265 (444)
T ss_dssp SCEEEEEECSSSSHHHH-HHHHHHHHHHT-------TCEEEEECSS-SCTTHHHHHHHHHHS--CCCHHHHHHTGGGTCC
T ss_pred CcEEEEEeCCCCChHHH-HHHHHHHHHHc-------CCEEEEEECC-CCHHHHHHHHHHHHc--CCCHHHHhcccCCCCH
Confidence 45689999999999974 55555554332 3456776432 333344433332211 11110001111
Q ss_pred ChHH----HHHHHhcCCcEEEe-----CHHHHHHHHHhcccccccee--EEEEechhhhhc
Q 003910 337 SKLD----QFKELKAGCEIVIA-----TPGRLIDMLKMKALTMSRVT--YLVLDEADRMFD 386 (787)
Q Consensus 337 ~~~~----~~~~l~~~~dIIV~-----Tp~~L~~~l~~~~~~l~~i~--~lViDEah~m~~ 386 (787)
..+. ....+. ...|.|- |+..|...+.+-.. -..++ +||||=.+.|..
T Consensus 266 ~~~~~l~~a~~~l~-~~~l~i~d~~~~s~~~i~~~ir~l~~-~~~~~~~lIVID~Lq~~~~ 324 (444)
T 3bgw_A 266 EDWGKLSMAIGEIS-NSNINIFDKAGQSVNYIWSKTRQTKR-KNPGKRVIVMIDYLQLLEP 324 (444)
T ss_dssp SCHHHHHHHHHHHH-TSCEEEECCSSCBHHHHHHHHHHHHH-HSCSSCEEEEEECSTTSBC
T ss_pred HHHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHH-HhCCCCeEEEEecHHhccC
Confidence 0111 111222 3455552 45555554432111 12577 999999998764
No 233
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=73.68 E-value=1.7 Score=46.44 Aligned_cols=25 Identities=32% Similarity=0.345 Sum_probs=18.3
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHH
Q 003910 262 GRDIIGIAKTGSGKTAAFVLPMIVHI 287 (787)
Q Consensus 262 grdvii~a~TGsGKTla~llp~l~~l 287 (787)
|+-+++.+++|+|||.. ++.++..+
T Consensus 61 G~iv~I~G~pGsGKTtL-al~la~~~ 85 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTV-ALHAVANA 85 (349)
T ss_dssp TSEEEEEESTTSSHHHH-HHHHHHHH
T ss_pred CeEEEEECCCCCCHHHH-HHHHHHHH
Confidence 46789999999999975 44444444
No 234
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=73.15 E-value=3 Score=49.60 Aligned_cols=54 Identities=22% Similarity=0.321 Sum_probs=32.5
Q ss_pred CccCCccccCCCHHHHHHHHHCC-C--CCCcHHHHHHHHHHHcCCCEEEEccCCCchhHH
Q 003910 222 RPVKTFEDCGFSTQLMHAISKQG-Y--EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 222 ~pi~sf~~~~l~~~l~~~l~~~g-~--~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla 278 (787)
.|-.+|.+++.-..+.+.|...= + ..|.-++... +...+.+|+.+|.|+|||+.
T Consensus 471 ~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g---~~~~~gvLl~GPPGtGKT~l 527 (806)
T 3cf2_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG---MTPSKGVLFYGPPGCGKTLL 527 (806)
T ss_dssp CCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC---CCCCSCCEEESSTTSSHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEecCCCCCchHH
Confidence 45567888887777777776541 1 1111111100 01225799999999999964
No 235
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=73.06 E-value=8.6 Score=42.90 Aligned_cols=55 Identities=16% Similarity=0.282 Sum_probs=28.5
Q ss_pred cceeEEEEechhhhhcC-CChHHHHHH---hhhc---CCCceEEEEeccCcHHHHHHHHHHh
Q 003910 371 SRVTYLVLDEADRMFDL-GFEPQIRSI---VGQI---RPDRQTLLFSATMPRKVEKLAREIL 425 (787)
Q Consensus 371 ~~i~~lViDEah~m~~~-~f~~~i~~i---l~~~---~~~~q~ll~SAT~~~~v~~l~~~~l 425 (787)
..+++||||=+=++... .....+..+ +..+ .+..-+|.+.||...+...+++.|.
T Consensus 374 ~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~ak~f~ 435 (503)
T 2yhs_A 374 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFH 435 (503)
T ss_dssp TTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHHHHHHH
Confidence 34568888877543211 111222233 2222 1334467888887666556666653
No 236
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=72.04 E-value=13 Score=39.34 Aligned_cols=92 Identities=16% Similarity=0.163 Sum_probs=61.6
Q ss_pred EecCCCcchHHH----HHHhcCCcCCCCCEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhcC
Q 003910 448 HVIPSDAEKLPW----LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSG 519 (787)
Q Consensus 448 ~~~~~~~~k~~~----L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~G 519 (787)
...+....|-.. ++..+.......++||.|+++.-+..+++.+... ++.+..++|+....+....+.
T Consensus 63 v~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----- 137 (394)
T 1fuu_A 63 AQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR----- 137 (394)
T ss_dssp ECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----
T ss_pred EECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----
Confidence 344455566533 2333443334569999999999998888887653 678999999998776655544
Q ss_pred CccEEEEeh-hh----h-ccCCCCCccEEEE
Q 003910 520 VYHVLIATD-VA----A-RGLDIKSIKSVVN 544 (787)
Q Consensus 520 ~~~VLVaT~-v~----~-rGlDip~v~~VI~ 544 (787)
..+|+|+|. .+ . ..+.+..+.+||.
T Consensus 138 ~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIi 168 (394)
T 1fuu_A 138 DAQIVVGTPGRVFDNIQRRRFRTDKIKMFIL 168 (394)
T ss_dssp HCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred CCCEEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 467999993 21 1 2455667777775
No 237
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=71.09 E-value=17 Score=36.54 Aligned_cols=71 Identities=14% Similarity=0.247 Sum_probs=52.3
Q ss_pred CCCEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhcCCccEEEEeh-----hhh--ccCCCCC
Q 003910 470 DGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-----VAA--RGLDIKS 538 (787)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-----v~~--rGlDip~ 538 (787)
..++||.++++.-+..+++.|... +..+..++|+......... +..+ .+|+|+|. .+. .++++..
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~~ 201 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYKN 201 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCccccc
Confidence 457999999999999988888764 5678889998876654433 3334 78999993 222 2467888
Q ss_pred ccEEEE
Q 003910 539 IKSVVN 544 (787)
Q Consensus 539 v~~VI~ 544 (787)
+.+||.
T Consensus 202 l~~lVi 207 (262)
T 3ly5_A 202 LQCLVI 207 (262)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888875
No 238
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=70.96 E-value=67 Score=37.15 Aligned_cols=78 Identities=15% Similarity=0.259 Sum_probs=57.3
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHH---Hhc-CCcEEEeCHHHHHHHHHhccccccc
Q 003910 297 EGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE---LKA-GCEIVIATPGRLIDMLKMKALTMSR 372 (787)
Q Consensus 297 ~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~---l~~-~~dIIV~Tp~~L~~~l~~~~~~l~~ 372 (787)
.+.++||.|+|+..+..+.+.+... ++.+.+++++....+.... +.. ..+|+||| +.+ ...+++..
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT-----~~l-~~GlDip~ 507 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGI-----NLL-REGLDIPE 507 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEES-----CCC-CTTCCCTT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEcc-----Chh-hcCccCCC
Confidence 3568999999999998887777665 7888888888765544333 333 48999999 222 34567888
Q ss_pred eeEEEEechhhh
Q 003910 373 VTYLVLDEADRM 384 (787)
Q Consensus 373 i~~lViDEah~m 384 (787)
+++||+=+++..
T Consensus 508 v~lVI~~d~d~~ 519 (664)
T 1c4o_A 508 VSLVAILDADKE 519 (664)
T ss_dssp EEEEEETTTTSC
T ss_pred CCEEEEeCCccc
Confidence 999999888753
No 239
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=70.68 E-value=9.6 Score=39.88 Aligned_cols=74 Identities=16% Similarity=0.297 Sum_probs=52.6
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHH---HHhc-CCcEEEeCHHHHHHHHHhccccccc
Q 003910 297 EGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK---ELKA-GCEIVIATPGRLIDMLKMKALTMSR 372 (787)
Q Consensus 297 ~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~---~l~~-~~dIIV~Tp~~L~~~l~~~~~~l~~ 372 (787)
.+.++||.|+++..+..+++.+++. ++.+..++|+.+..+... .+.. ..+|+|||. .+. ..+++..
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~-~Gid~~~ 306 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMS-RGIDVND 306 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THH-HHCCCSC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhh-cCCCccc
Confidence 3556899999999999888877765 788899999887654432 2222 478999993 222 2456777
Q ss_pred eeEEEEec
Q 003910 373 VTYLVLDE 380 (787)
Q Consensus 373 i~~lViDE 380 (787)
+++||.-.
T Consensus 307 ~~~Vi~~~ 314 (367)
T 1hv8_A 307 LNCVINYH 314 (367)
T ss_dssp CSEEEESS
T ss_pred CCEEEEec
Confidence 88887643
No 240
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=70.59 E-value=2 Score=43.85 Aligned_cols=20 Identities=30% Similarity=0.232 Sum_probs=16.5
Q ss_pred HHcCCCEEEEccCCCchhHH
Q 003910 259 ILSGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 259 il~grdvii~a~TGsGKTla 278 (787)
+..|.-+++++|||||||..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH
T ss_pred hCCCCEEEEECCCCccHHHH
Confidence 34667789999999999974
No 241
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=70.28 E-value=3.3 Score=44.37 Aligned_cols=38 Identities=24% Similarity=0.288 Sum_probs=24.8
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCc
Q 003910 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPT 307 (787)
Q Consensus 262 grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~Pt 307 (787)
|.-+++.+++|+|||.. ++.++..+.. .+..++++..-
T Consensus 61 G~i~~I~GppGsGKSTL-al~la~~~~~-------~gg~VlyId~E 98 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTL-ALHAIAEAQK-------MGGVAAFIDAE 98 (356)
T ss_dssp TEEEEEEESTTSSHHHH-HHHHHHHHHH-------TTCCEEEEESS
T ss_pred CcEEEEECCCCCCHHHH-HHHHHHHHHh-------cCCeEEEEecc
Confidence 45688999999999974 5555555432 23446666544
No 242
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=69.62 E-value=13 Score=44.26 Aligned_cols=18 Identities=33% Similarity=0.440 Sum_probs=15.4
Q ss_pred cCCCEEEEccCCCchhHH
Q 003910 261 SGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla 278 (787)
.++.+++++|+|+|||+.
T Consensus 237 ~~~~vLL~Gp~GtGKTtL 254 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLI 254 (806)
T ss_dssp CCCEEEECSCTTSSHHHH
T ss_pred CCCeEEEECcCCCCHHHH
Confidence 356799999999999974
No 243
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=69.03 E-value=13 Score=39.79 Aligned_cols=72 Identities=17% Similarity=0.273 Sum_probs=52.5
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHH---HHhc-CCcEEEeCHHHHHHHHHhccccccce
Q 003910 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFK---ELKA-GCEIVIATPGRLIDMLKMKALTMSRV 373 (787)
Q Consensus 298 ~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~---~l~~-~~dIIV~Tp~~L~~~l~~~~~~l~~i 373 (787)
..++||.|+++..+..+++.+... ++.+..++|+.+..+... .+.. ...|+|||. .+ ...+++..+
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidi~~v 345 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----VW-ARGLDVPQV 345 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----GG-SSSCCCTTE
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-----hh-hCcCCcccC
Confidence 347899999999998887777664 788899999887654332 2222 478999993 22 345678888
Q ss_pred eEEEEe
Q 003910 374 TYLVLD 379 (787)
Q Consensus 374 ~~lViD 379 (787)
++||.-
T Consensus 346 ~~Vi~~ 351 (410)
T 2j0s_A 346 SLIINY 351 (410)
T ss_dssp EEEEES
T ss_pred CEEEEE
Confidence 888863
No 244
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=68.82 E-value=19 Score=39.49 Aligned_cols=17 Identities=24% Similarity=0.360 Sum_probs=13.8
Q ss_pred CCEEEEccCCCchhHHH
Q 003910 263 RDIIGIAKTGSGKTAAF 279 (787)
Q Consensus 263 rdvii~a~TGsGKTla~ 279 (787)
+.++++++.|+|||.+.
T Consensus 101 ~vI~ivG~~GvGKTT~a 117 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSV 117 (433)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45778899999999763
No 245
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=68.74 E-value=18 Score=38.54 Aligned_cols=93 Identities=14% Similarity=0.174 Sum_probs=60.5
Q ss_pred EecCCCcchHHH----HHHhcCCcCCCCCEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhcC
Q 003910 448 HVIPSDAEKLPW----LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSG 519 (787)
Q Consensus 448 ~~~~~~~~k~~~----L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~G 519 (787)
...+....|-.. ++..+.......++||.|+++.-+..+++.+... ++.+..++|+......... ..+
T Consensus 63 i~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~ 138 (400)
T 1s2m_A 63 ARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILR----LNE 138 (400)
T ss_dssp EECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHH----TTS
T ss_pred EECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHH----hcC
Confidence 344455566532 2233333224458999999999998888888764 6788899998876543222 235
Q ss_pred CccEEEEeh-----hhhc-cCCCCCccEEEE
Q 003910 520 VYHVLIATD-----VAAR-GLDIKSIKSVVN 544 (787)
Q Consensus 520 ~~~VLVaT~-----v~~r-GlDip~v~~VI~ 544 (787)
..+|+|+|. .+.+ .+++..+.+||.
T Consensus 139 ~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIi 169 (400)
T 1s2m_A 139 TVHILVGTPGRVLDLASRKVADLSDCSLFIM 169 (400)
T ss_dssp CCSEEEECHHHHHHHHHTTCSCCTTCCEEEE
T ss_pred CCCEEEEchHHHHHHHHhCCcccccCCEEEE
Confidence 678999993 2223 366777888775
No 246
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=68.28 E-value=31 Score=37.60 Aligned_cols=17 Identities=29% Similarity=0.274 Sum_probs=13.9
Q ss_pred CCCEEEEccCCCchhHH
Q 003910 262 GRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 262 grdvii~a~TGsGKTla 278 (787)
++-++++++.|+|||..
T Consensus 98 ~~vi~i~G~~GsGKTT~ 114 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTT 114 (425)
T ss_dssp SEEEEEECCTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45677889999999975
No 247
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=71.34 E-value=1.1 Score=42.43 Aligned_cols=72 Identities=15% Similarity=0.207 Sum_probs=48.3
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHH---Hhc-CCcEEEeCHHHHHHHHHhccccccce
Q 003910 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE---LKA-GCEIVIATPGRLIDMLKMKALTMSRV 373 (787)
Q Consensus 298 ~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~---l~~-~~dIIV~Tp~~L~~~l~~~~~~l~~i 373 (787)
+.++||.|+++..+..+++.+... ++.+..++|+.+..+.... +.. ...|+|||. .+ ...+++..+
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~-~~Gid~~~~ 99 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-----VA-ARGIDIPDV 99 (170)
Confidence 456899999999998888777765 7888888988765443222 222 368999992 22 223456667
Q ss_pred eEEEEe
Q 003910 374 TYLVLD 379 (787)
Q Consensus 374 ~~lViD 379 (787)
.+||.-
T Consensus 100 ~~Vi~~ 105 (170)
T 2yjt_D 100 SHVFNF 105 (170)
Confidence 766653
No 248
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=68.11 E-value=22 Score=37.88 Aligned_cols=94 Identities=21% Similarity=0.248 Sum_probs=62.4
Q ss_pred EecCCCcchHHH----HHHhcCCcCCCCCEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhcC
Q 003910 448 HVIPSDAEKLPW----LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSG 519 (787)
Q Consensus 448 ~~~~~~~~k~~~----L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~G 519 (787)
...+....|-.. ++..+.......++||.++++.-+..+++.+... +..+..++|+...... +..+..+
T Consensus 82 v~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 158 (414)
T 3eiq_A 82 AQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQME 158 (414)
T ss_dssp ECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTT
T ss_pred EECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcC
Confidence 344455566433 2334443334568999999999998888888764 5778888888765443 4455667
Q ss_pred CccEEEEeh-----hhhc-cCCCCCccEEEE
Q 003910 520 VYHVLIATD-----VAAR-GLDIKSIKSVVN 544 (787)
Q Consensus 520 ~~~VLVaT~-----v~~r-GlDip~v~~VI~ 544 (787)
..+|+|+|. .+.+ .+++..+.+||.
T Consensus 159 ~~~iiv~T~~~l~~~l~~~~~~~~~~~~vVi 189 (414)
T 3eiq_A 159 APHIIVGTPGRVFDMLNRRYLSPKYIKMFVL 189 (414)
T ss_dssp CCSEEEECHHHHHHHHHHTSSCSTTCCEEEE
T ss_pred CCCEEEECHHHHHHHHHcCCcccccCcEEEE
Confidence 789999993 2223 356667777764
No 249
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=68.01 E-value=4.2 Score=44.61 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=32.3
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHH
Q 003910 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAH 312 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~ 312 (787)
...+++++|+||+|||.. +.+++..++. .+..++|+=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~-~~~li~~~~~-------~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVL-LRELAYTGLL-------RGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHH-HHHHHHHHHH-------TTCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHH-HHHHHHHHHH-------CCCcEEEEeCCCchhH
Confidence 347999999999999986 4445555443 2456888889888864
No 250
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=67.93 E-value=4.7 Score=43.12 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=17.9
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHH
Q 003910 261 SGRDIIGIAKTGSGKTAAFVLPMIVHI 287 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla~llp~l~~l 287 (787)
.+.-+++++|||||||.. +-.++..+
T Consensus 122 ~~g~i~I~GptGSGKTTl-L~~l~g~~ 147 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT-LAAMLDYL 147 (356)
T ss_dssp SSEEEEEECSTTSCHHHH-HHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHH-HHHHHhcc
Confidence 445788999999999974 33333443
No 251
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=67.14 E-value=12 Score=40.73 Aligned_cols=68 Identities=12% Similarity=0.170 Sum_probs=50.6
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHH---Hhc-CCcEEEeCHHHHHHHHHhccccccceeEE
Q 003910 301 GVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE---LKA-GCEIVIATPGRLIDMLKMKALTMSRVTYL 376 (787)
Q Consensus 301 vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~---l~~-~~dIIV~Tp~~L~~~l~~~~~~l~~i~~l 376 (787)
+||.|+|+.-|..+++.+.+. ++.+..++|+....+.... +.. ...|+|||. . -...+++..+++|
T Consensus 303 ~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----v-~~rGlDi~~v~~V 372 (434)
T 2db3_A 303 TIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS-----V-ASRGLDIKNIKHV 372 (434)
T ss_dssp EEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG-----G-GTSSCCCTTCCEE
T ss_pred EEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch-----h-hhCCCCcccCCEE
Confidence 899999999999887777664 7889999998876544333 333 479999994 2 2345677888888
Q ss_pred EE
Q 003910 377 VL 378 (787)
Q Consensus 377 Vi 378 (787)
|.
T Consensus 373 I~ 374 (434)
T 2db3_A 373 IN 374 (434)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 252
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=67.00 E-value=4.7 Score=34.83 Aligned_cols=46 Identities=20% Similarity=0.187 Sum_probs=37.0
Q ss_pred HHHhcCCcCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCC
Q 003910 460 LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKD 505 (787)
Q Consensus 460 L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~ 505 (787)
|...+.......+++|||.+-..+...+..|...|+.+..|.|++.
T Consensus 45 l~~~~~~l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 45 LREKWKILERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp HHHHGGGSCTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred HHHHHHhCCCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 4444444445668999999988899999999999999999999864
No 253
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=66.80 E-value=5 Score=39.91 Aligned_cols=72 Identities=19% Similarity=0.343 Sum_probs=48.9
Q ss_pred CCCEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhcCCccEEEEeh-----hhhc---cCCCC
Q 003910 470 DGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-----VAAR---GLDIK 537 (787)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-----v~~r---GlDip 537 (787)
..++||.++++.-+..+++.+... ++.+..++|+..... .......+..+|+|+|. .+.. .+++.
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 174 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLA 174 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH---HhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccc
Confidence 347999999999999999888775 667777776532211 11222346678999993 2222 47788
Q ss_pred CccEEEE
Q 003910 538 SIKSVVN 544 (787)
Q Consensus 538 ~v~~VI~ 544 (787)
.+.+||.
T Consensus 175 ~~~~lVi 181 (245)
T 3dkp_A 175 SVEWLVV 181 (245)
T ss_dssp TCCEEEE
T ss_pred cCcEEEE
Confidence 8888775
No 254
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=66.71 E-value=12 Score=39.55 Aligned_cols=44 Identities=11% Similarity=-0.062 Sum_probs=24.6
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCc
Q 003910 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPT 307 (787)
Q Consensus 262 grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~Pt 307 (787)
|.-+++++++|+|||.. ++.++..+..... ....+..++++.-.
T Consensus 122 G~i~~I~G~~GsGKTtl-a~~la~~~~~~~~-~gg~~~~vlyi~~E 165 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQL-SHTLCVTAQLPGA-GGYPGGKIIFIDTE 165 (343)
T ss_dssp SEEEEEECCTTCTHHHH-HHHHHHHTTSCBT-TTBCCCEEEEEESS
T ss_pred CeEEEEECCCCCCHHHH-HHHHHHHHhcccc-cCCCCCeEEEEECC
Confidence 45689999999999974 4444333221110 01124456776543
No 255
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=66.56 E-value=7.1 Score=48.69 Aligned_cols=89 Identities=15% Similarity=0.105 Sum_probs=49.4
Q ss_pred EEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHH
Q 003910 265 IIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKE 344 (787)
Q Consensus 265 vii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~ 344 (787)
-+|.|..|||||.+ ++.-+.+++... ..+..+|+|||... ..++...+.+.. +..
T Consensus 4 ~lV~agAGSGKT~~-l~~ri~~ll~~~----~~~~~il~lVP~q~-TFt~~~rl~~~l---~~~---------------- 58 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKL-IINSIQDELRRA----PFGKPIIFLVPDQM-TFLMEYELAKTP---DMG---------------- 58 (1166)
T ss_dssp EEEEECTTSSHHHH-HHHHHHHHHHHC----TTSSCEEEECCGGG-HHHHHHHHTCCS---SCS----------------
T ss_pred EEEEeCCCCChHHH-HHHHHHHHHHhC----CCCCcEEEEecCcc-cHHHHHHHHHhh---hhc----------------
Confidence 36889999999987 444445554321 23466899999863 333332222221 110
Q ss_pred HhcCCcEEEeCHHHHHHHHHhccccccceeEEEEechhh
Q 003910 345 LKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADR 383 (787)
Q Consensus 345 l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah~ 383 (787)
.-..|-|+|..+|...+-+..- .....|+|+.+.
T Consensus 59 --~~~~~~V~TFhsla~~il~~~g---~~~~~ild~~~~ 92 (1166)
T 3u4q_B 59 --GMIRAQVFSFSRLAWRVLQHTG---GMSRPFLTSTGV 92 (1166)
T ss_dssp --EESSEEEECHHHHHHHHHHHHS---CTTSCEECHHHH
T ss_pred --ceeeeEEecHHHHHHHHHHHcC---CCcccCcCHHHH
Confidence 0135788888888654433221 122356777763
No 256
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=65.92 E-value=32 Score=38.44 Aligned_cols=15 Identities=40% Similarity=0.494 Sum_probs=13.2
Q ss_pred CEEEEccCCCchhHH
Q 003910 264 DIIGIAKTGSGKTAA 278 (787)
Q Consensus 264 dvii~a~TGsGKTla 278 (787)
.+++++.+|+|||..
T Consensus 103 vI~ivG~~GvGKTTl 117 (504)
T 2j37_W 103 VIMFVGLQGSGKTTT 117 (504)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578899999999976
No 257
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=65.88 E-value=12 Score=38.80 Aligned_cols=108 Identities=14% Similarity=0.033 Sum_probs=65.0
Q ss_pred CCCEEEEecccccHHHHHHHHHHc-----CCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehh-h----h--ccCCCC
Q 003910 470 DGDVLVFASKKTTVDEIESQLAQK-----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDV-A----A--RGLDIK 537 (787)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~-----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v-~----~--rGlDip 537 (787)
..++||.++++.-+..++..+... ++.+..++|+...... .....+|||+|.- + . ..+++.
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l~ 234 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPK 234 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCGG
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCChh
Confidence 347999999999999988888764 4667777776653221 1345689999942 2 1 357788
Q ss_pred CccEEEEecCC-----CCHHHHHHHhhccCCCCCCCcEEEEEEccccHHHHHHHHH
Q 003910 538 SIKSVVNFDIA-----RDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVN 588 (787)
Q Consensus 538 ~v~~VI~~d~p-----~s~~~y~QriGR~gR~G~~~G~~i~l~~~~d~~~~~~l~~ 588 (787)
.+.+||.=... ......+.++-+.-+ ...-+++++..-......+.+
T Consensus 235 ~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~----~~~q~i~~SAT~~~~v~~~a~ 286 (300)
T 3fmo_B 235 KIKVFVLDEADVMIATQGHQDQSIRIQRMLP----RNCQMLLFSATFEDSVWKFAQ 286 (300)
T ss_dssp GCSEEEETTHHHHHHSTTHHHHHHHHHTTSC----TTCEEEEEESCCCHHHHHHHH
T ss_pred hceEEEEeCHHHHhhccCcHHHHHHHHHhCC----CCCEEEEEeccCCHHHHHHHH
Confidence 89888853221 223333444444332 234466666654444444433
No 258
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=65.34 E-value=19 Score=37.43 Aligned_cols=24 Identities=29% Similarity=0.173 Sum_probs=18.0
Q ss_pred HHHHHHc-----CCCEEEEccCCCchhHH
Q 003910 255 ALPIILS-----GRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 255 ai~~il~-----grdvii~a~TGsGKTla 278 (787)
.+..++. |.-+++.+++|+|||..
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~l 114 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQI 114 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHH
Confidence 3555553 45689999999999974
No 259
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=65.34 E-value=7 Score=50.92 Aligned_cols=46 Identities=22% Similarity=0.206 Sum_probs=30.5
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHH
Q 003910 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIY 315 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~ 315 (787)
.++.+++++++|+|||...+..+...+ . .+-.++++. ..++..+++
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~-k-------~Ge~~~Fit-~ee~~~~L~ 1125 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQ-R-------EGKTCAFID-AEHALDPIY 1125 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH-T-------TTCCEEEEC-TTSCCCHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH-H-------cCCeEEEEE-ccccHHHHH
Confidence 568999999999999986444443333 2 255577764 445666665
No 260
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=64.70 E-value=9.4 Score=42.76 Aligned_cols=71 Identities=13% Similarity=0.293 Sum_probs=48.1
Q ss_pred CCCEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhcCCccEEEEeh-hhh----cc-C-CCCC
Q 003910 470 DGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VAA----RG-L-DIKS 538 (787)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-v~~----rG-l-Dip~ 538 (787)
..++||.|+++.-+..+.+.|... ++.+..+||+.+...+...+. ...+|+|+|. .+. .+ + .+..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 568999999999888888877765 899999999987655433222 1378999993 222 22 4 6777
Q ss_pred ccEEEE
Q 003910 539 IKSVVN 544 (787)
Q Consensus 539 v~~VI~ 544 (787)
+++||.
T Consensus 131 ~~~vVi 136 (556)
T 4a2p_A 131 FTLMIF 136 (556)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 888876
No 261
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=64.70 E-value=9.6 Score=45.27 Aligned_cols=16 Identities=38% Similarity=0.520 Sum_probs=14.5
Q ss_pred CCEEEEccCCCchhHH
Q 003910 263 RDIIGIAKTGSGKTAA 278 (787)
Q Consensus 263 rdvii~a~TGsGKTla 278 (787)
+.+|+.+|.|+|||+.
T Consensus 239 ~GILL~GPPGTGKT~L 254 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLI 254 (806)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 5799999999999975
No 262
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=64.03 E-value=5.5 Score=43.79 Aligned_cols=16 Identities=38% Similarity=0.493 Sum_probs=14.1
Q ss_pred CCEEEEccCCCchhHH
Q 003910 263 RDIIGIAKTGSGKTAA 278 (787)
Q Consensus 263 rdvii~a~TGsGKTla 278 (787)
+.+++++++|+|||..
T Consensus 100 ~vI~ivG~~GvGKTTl 115 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTT 115 (432)
T ss_dssp CCEEEECCSSSSTTHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4788999999999975
No 263
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=63.04 E-value=22 Score=37.64 Aligned_cols=24 Identities=29% Similarity=0.263 Sum_probs=18.1
Q ss_pred HHHHHH-----cCCCEEEEccCCCchhHH
Q 003910 255 ALPIIL-----SGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 255 ai~~il-----~grdvii~a~TGsGKTla 278 (787)
.+..++ .|+-+.++++.|+|||..
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL 147 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQL 147 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHH
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHH
Confidence 355555 345688999999999974
No 264
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=62.68 E-value=6.9 Score=43.79 Aligned_cols=71 Identities=14% Similarity=0.352 Sum_probs=50.3
Q ss_pred CCCEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhcCCccEEEEeh-hhh----cc-C-CCCC
Q 003910 470 DGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VAA----RG-L-DIKS 538 (787)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-v~~----rG-l-Dip~ 538 (787)
..++||+|+++.-+..+...+... ++.+..++|+.+...+...+. ...+|+|+|. .+. .+ + .+..
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 568999999998888877777665 899999999986654432222 1378999993 222 22 3 5667
Q ss_pred ccEEEE
Q 003910 539 IKSVVN 544 (787)
Q Consensus 539 v~~VI~ 544 (787)
+++||.
T Consensus 128 ~~~vVi 133 (555)
T 3tbk_A 128 FTLMIF 133 (555)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 787775
No 265
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=61.85 E-value=16 Score=40.02 Aligned_cols=54 Identities=19% Similarity=0.262 Sum_probs=31.2
Q ss_pred CccCCccccCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHH
Q 003910 222 RPVKTFEDCGFSTQLMHAISKQ---GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 222 ~pi~sf~~~~l~~~l~~~l~~~---g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla 278 (787)
+|-.+|++.+--+...+.|... .+..|--++.-.+ .--+.+|+.+|+|+|||+.
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~---~~prGvLL~GPPGtGKTll 231 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI---KPPKGVLLYGPPGTGKTLL 231 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTSSHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeEEEECCCCCcHHHH
Confidence 4667899987555655555432 0111111111110 1137899999999999975
No 266
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=61.11 E-value=11 Score=41.07 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=17.4
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHH
Q 003910 262 GRDIIGIAKTGSGKTAAFVLPMIVHI 287 (787)
Q Consensus 262 grdvii~a~TGsGKTla~llp~l~~l 287 (787)
+.-+++++|||||||.. +-.++..+
T Consensus 167 ggii~I~GpnGSGKTTl-L~allg~l 191 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTT-LYAGLQEL 191 (418)
T ss_dssp SEEEEEECSTTSCHHHH-HHHHHHHH
T ss_pred CCeEEEECCCCCCHHHH-HHHHHhhc
Confidence 34578999999999974 33344443
No 267
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=60.63 E-value=7 Score=34.59 Aligned_cols=46 Identities=20% Similarity=0.192 Sum_probs=35.9
Q ss_pred HHHhcCCcCCCCCEEEEeccccc--HHHHHHHHHHcCCceeeccCCCC
Q 003910 460 LLEKLPGMIDDGDVLVFASKKTT--VDEIESQLAQKGFKAAALHGDKD 505 (787)
Q Consensus 460 L~~~L~~~~~~~kvLVF~~s~~~--a~~l~~~L~~~g~~v~~lhg~~~ 505 (787)
|...+.......+++|||.+-.. +..++..|...|+.+..|.|++.
T Consensus 61 l~~~~~~l~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 61 LATRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp HHHHGGGSCTTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred HHHHHhcCCCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 33444444456689999999877 89999999999999888988764
No 268
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=60.06 E-value=8.2 Score=42.44 Aligned_cols=68 Identities=13% Similarity=0.153 Sum_probs=44.3
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhc-CCcEEEeCHHHHHHHHHhccccccceeEE
Q 003910 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYL 376 (787)
Q Consensus 298 ~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~-~~dIIV~Tp~~L~~~l~~~~~~l~~i~~l 376 (787)
+.++||.||++.-|..+++.+++. ++++.+++|. .....+..+.. ..+|||||. .+. ..+++. +++|
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~-~R~~~~~~F~~g~~~vLVaT~-----v~e-~GiDip-v~~V 244 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRK-TFEREYPTIKQKKPDFILATD-----IAE-MGANLC-VERV 244 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSS-SCC--------CCCSEEEESS-----STT-CCTTCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecch-hHHHHHhhhcCCCceEEEECC-----hhh-eeeccC-ceEE
Confidence 456999999999999988888775 7888888883 33344444444 489999993 332 344566 7776
Q ss_pred E
Q 003910 377 V 377 (787)
Q Consensus 377 V 377 (787)
|
T Consensus 245 I 245 (440)
T 1yks_A 245 L 245 (440)
T ss_dssp E
T ss_pred E
Confidence 6
No 269
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=59.60 E-value=13 Score=44.30 Aligned_cols=71 Identities=13% Similarity=0.293 Sum_probs=47.8
Q ss_pred CCCEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhcCCccEEEEeh-hhh----cc-C-CCCC
Q 003910 470 DGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VAA----RG-L-DIKS 538 (787)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-v~~----rG-l-Dip~ 538 (787)
.+++||.|+++.-+..+...|... ++.+..+||+.+...+...+. ...+|||+|. .+. .+ + .+..
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 568999999999888887777665 899999999997665433322 2578999993 222 22 3 5666
Q ss_pred ccEEEE
Q 003910 539 IKSVVN 544 (787)
Q Consensus 539 v~~VI~ 544 (787)
+++||.
T Consensus 372 ~~~iVi 377 (797)
T 4a2q_A 372 FTLMIF 377 (797)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 788775
No 270
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=58.86 E-value=8.9 Score=31.93 Aligned_cols=42 Identities=19% Similarity=0.253 Sum_probs=34.3
Q ss_pred hcCCcCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCC
Q 003910 463 KLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKD 505 (787)
Q Consensus 463 ~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~ 505 (787)
.+..... .+++|||.+-..+...+..|...|+.+..+.|++.
T Consensus 47 ~~~~l~~-~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 47 GEHGLPR-RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp TCCCCCS-SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred HHHhCCC-CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 3444445 78999999988899999999999999888888764
No 271
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=58.86 E-value=12 Score=37.37 Aligned_cols=16 Identities=25% Similarity=0.549 Sum_probs=14.3
Q ss_pred CCEEEEccCCCchhHH
Q 003910 263 RDIIGIAKTGSGKTAA 278 (787)
Q Consensus 263 rdvii~a~TGsGKTla 278 (787)
+.+++.+|+|+|||..
T Consensus 46 ~~vll~G~~GtGKT~l 61 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLL 61 (257)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred CeEEEECcCCCCHHHH
Confidence 5799999999999975
No 272
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=57.09 E-value=23 Score=30.27 Aligned_cols=51 Identities=27% Similarity=0.459 Sum_probs=42.8
Q ss_pred EEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccE
Q 003910 473 VLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHV 523 (787)
Q Consensus 473 vLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~V 523 (787)
.+||...-+.+..+...++..|..+++|+++.+...|.+-++.|...-++|
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdv 55 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDV 55 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCce
Confidence 367777778888888999999999999999999999999999997654443
No 273
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=56.41 E-value=12 Score=36.49 Aligned_cols=32 Identities=28% Similarity=0.247 Sum_probs=26.4
Q ss_pred CCcHHHHHHHHHHHcCCCEEEEccCCCchhHH
Q 003910 247 KPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 247 ~ptp~Q~~ai~~il~grdvii~a~TGsGKTla 278 (787)
.-+.-|..++..+..|.-+.+.++.|+|||..
T Consensus 7 pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTL 38 (208)
T 3b85_A 7 PKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYL 38 (208)
T ss_dssp CCSHHHHHHHHHHHHCSEEEEECCTTSSTTHH
T ss_pred cCCHhHHHHHHhccCCCEEEEECCCCCCHHHH
Confidence 33456777888888999999999999999964
No 274
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=56.28 E-value=44 Score=37.39 Aligned_cols=125 Identities=14% Similarity=0.225 Sum_probs=62.0
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHH
Q 003910 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLD 340 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~ 340 (787)
.|.-+++.+++|+|||.. +..++..+.. .+..++++++... ..|+...+..+ ++. . .
T Consensus 280 ~G~i~~i~G~~GsGKSTL-l~~l~g~~~~-------~G~~vi~~~~ee~-~~~l~~~~~~~----g~~---------~-~ 336 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLL-VSRFVENACA-------NKERAILFAYEES-RAQLLRNAYSW----GMD---------F-E 336 (525)
T ss_dssp SSCEEEEEECTTSSHHHH-HHHHHHHHHT-------TTCCEEEEESSSC-HHHHHHHHHTT----SCC---------H-H
T ss_pred CCcEEEEEeCCCCCHHHH-HHHHHHHHHh-------CCCCEEEEEEeCC-HHHHHHHHHHc----CCC---------H-H
Confidence 556788999999999974 3333332211 2334666665422 23544433221 221 1 1
Q ss_pred HHHHHhcCCcEEE-------eCHHHHHHHHHhccccccceeEEEEechhhhhcCC-----ChHHHHHHhhhcCC-CceEE
Q 003910 341 QFKELKAGCEIVI-------ATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLG-----FEPQIRSIVGQIRP-DRQTL 407 (787)
Q Consensus 341 ~~~~l~~~~dIIV-------~Tp~~L~~~l~~~~~~l~~i~~lViDEah~m~~~~-----f~~~i~~il~~~~~-~~q~l 407 (787)
.+. ..+ .+-+ .+.+.....+.... ...+.++|||| -=.-++.. ....+..++..+.. ..-+|
T Consensus 337 ~~~--~~g-~~~~~~~~p~~LS~g~~q~~~~a~~-l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvi 411 (525)
T 1tf7_A 337 EME--RQN-LLKIVCAYPESAGLEDHLQIIKSEI-NDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGL 411 (525)
T ss_dssp HHH--HTT-SEEECCCCGGGSCHHHHHHHHHHHH-HTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHH--hCC-CEEEEEeccccCCHHHHHHHHHHHH-HhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEE
Confidence 111 111 1111 24555554443322 24567899999 65666665 45555556555543 33445
Q ss_pred EEeccC
Q 003910 408 LFSATM 413 (787)
Q Consensus 408 l~SAT~ 413 (787)
+.|...
T Consensus 412 lvsh~~ 417 (525)
T 1tf7_A 412 FTNTSD 417 (525)
T ss_dssp EEEECS
T ss_pred EEECcc
Confidence 555443
No 275
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=55.98 E-value=57 Score=36.01 Aligned_cols=75 Identities=13% Similarity=0.086 Sum_probs=48.0
Q ss_pred CEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHH---HHHhc-CCcEEEeCHHHHHHHHHhcccccccee
Q 003910 299 PIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQF---KELKA-GCEIVIATPGRLIDMLKMKALTMSRVT 374 (787)
Q Consensus 299 p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~---~~l~~-~~dIIV~Tp~~L~~~l~~~~~~l~~i~ 374 (787)
...+|++..+.-+..+.+.+.. .+.++..++|+.+..+.. ..+.. ..+|+|||+..+-. .+++..+.
T Consensus 348 ~~~~ivf~~~~~~~~l~~~L~~----~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~-----GiDip~v~ 418 (510)
T 2oca_A 348 ENAFVMFKHVSHGKAIFDLIKN----EYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST-----GISVKNLH 418 (510)
T ss_dssp CEEEEEESSHHHHHHHHHHHHT----TCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH-----SCCCCSEE
T ss_pred CCeEEEEecHHHHHHHHHHHHH----cCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc-----ccccccCc
Confidence 3344445545555555554444 355888888888755432 22333 47899999766654 45788899
Q ss_pred EEEEechh
Q 003910 375 YLVLDEAD 382 (787)
Q Consensus 375 ~lViDEah 382 (787)
+||+..+.
T Consensus 419 ~vi~~~~~ 426 (510)
T 2oca_A 419 HVVLAHGV 426 (510)
T ss_dssp EEEESSCC
T ss_pred EEEEeCCC
Confidence 99988776
No 276
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=55.82 E-value=7.9 Score=40.69 Aligned_cols=41 Identities=17% Similarity=0.079 Sum_probs=26.2
Q ss_pred CEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHH
Q 003910 264 DIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTREL 310 (787)
Q Consensus 264 dvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreL 310 (787)
-+++.++.|+|||.. ++.++..+... ..+..++++..-..+
T Consensus 30 iteI~G~pGsGKTtL-~Lq~~~~~~~~-----g~g~~vlyId~E~s~ 70 (333)
T 3io5_A 30 LLILAGPSKSFKSNF-GLTMVSSYMRQ-----YPDAVCLFYDSEFGI 70 (333)
T ss_dssp EEEEEESSSSSHHHH-HHHHHHHHHHH-----CTTCEEEEEESSCCC
T ss_pred eEEEECCCCCCHHHH-HHHHHHHHHhc-----CCCceEEEEeccchh
Confidence 478899999999975 44555444321 124567887665444
No 277
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=55.56 E-value=28 Score=32.65 Aligned_cols=65 Identities=11% Similarity=0.334 Sum_probs=51.4
Q ss_pred CCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhhccCCCCCccEEEEecCCC
Q 003910 470 DGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIKSVVNFDIAR 549 (787)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~rGlDip~v~~VI~~d~p~ 549 (787)
.+.+-|.|.+...+..+...|...++++..+..+.. .| .-.|.|.|--.+.|+.+ ++||.+++..
T Consensus 61 ~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~---------~~---~~~v~v~t~~~~KGlEf---~~V~~~~~~~ 125 (174)
T 3dmn_A 61 RDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ---------RL---APGVIVVPSFLAKGLEF---DAVIVWNANQ 125 (174)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC----------CC---CSSEEEEEGGGCTTCCE---EEEEEETCBT
T ss_pred CCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc---------cc---CCCeEEEEccccCCcCC---CEEEEecCCc
Confidence 457999999999999999999999999888876442 12 24699999999999987 6778777543
No 278
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=55.49 E-value=9 Score=36.76 Aligned_cols=55 Identities=18% Similarity=0.320 Sum_probs=35.0
Q ss_pred CCCEEEEecccccHHH-HHHHHHHc---CCceeeccCCCCHHHHHHHHHHhhcCCccEEEEeh
Q 003910 470 DGDVLVFASKKTTVDE-IESQLAQK---GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD 528 (787)
Q Consensus 470 ~~kvLVF~~s~~~a~~-l~~~L~~~---g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~ 528 (787)
..++||+|+++.-+.. +.+.+... ++.+..++|+.....+...+. ...+|+|+|.
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~ 140 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTA 140 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEH
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECH
Confidence 5689999999988777 55555443 678999998765432221111 1478999993
No 279
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=55.44 E-value=31 Score=35.30 Aligned_cols=90 Identities=13% Similarity=0.140 Sum_probs=58.6
Q ss_pred EecCCCcchHHHHHHhcCCcCCCCCEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhcCCccE
Q 003910 448 HVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHV 523 (787)
Q Consensus 448 ~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~V 523 (787)
...+....|-...+..+.. ...++||.|+++.-+..+++.+... +..+..++|+.+.......+ . ..+|
T Consensus 36 v~~~TGsGKT~~~~~~~~~--~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~i 108 (337)
T 2z0m_A 36 VRAKTGSGKTAAYAIPILE--LGMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRV---R--NADI 108 (337)
T ss_dssp EECCTTSSHHHHHHHHHHH--HTCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHH---T--TCSE
T ss_pred EEcCCCCcHHHHHHHHHHh--hcCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhc---C--CCCE
Confidence 3444555565433222221 2568999999999999988888764 57889999999876544333 2 3789
Q ss_pred EEEeh-hh----hc-cCCCCCccEEEE
Q 003910 524 LIATD-VA----AR-GLDIKSIKSVVN 544 (787)
Q Consensus 524 LVaT~-v~----~r-GlDip~v~~VI~ 544 (787)
+|+|. .+ .. .+++..+++||.
T Consensus 109 ~v~T~~~l~~~~~~~~~~~~~~~~iVi 135 (337)
T 2z0m_A 109 VVATPGRLLDLWSKGVIDLSSFEIVII 135 (337)
T ss_dssp EEECHHHHHHHHHTTSCCGGGCSEEEE
T ss_pred EEECHHHHHHHHHcCCcchhhCcEEEE
Confidence 99993 22 22 345667777764
No 280
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=55.20 E-value=15 Score=40.23 Aligned_cols=53 Identities=17% Similarity=0.080 Sum_probs=39.7
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhc-CCcEEEeC
Q 003910 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKA-GCEIVIAT 355 (787)
Q Consensus 298 ~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~-~~dIIV~T 355 (787)
+.++||+||++.-+..+++.+++. ++++..++|.. ....+..+.. ..+|||||
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~-r~~~~~~f~~g~~~vLVaT 224 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKT-FESEYPKCKSEKWDFVITT 224 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTT-HHHHTTHHHHSCCSEEEEC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCcc-HHHHHHhhcCCCCeEEEEC
Confidence 346899999999999988888776 78888888763 3333344443 48999999
No 281
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=54.75 E-value=24 Score=41.71 Aligned_cols=75 Identities=16% Similarity=0.229 Sum_probs=53.9
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHHhhh-------cCceEEEEECCCChHHHHHHHh---------cCCcEEEeCHHHHHH
Q 003910 298 GPIGVICAPTRELAHQIYLETKKFAKS-------HGIRVSAVYGGMSKLDQFKELK---------AGCEIVIATPGRLID 361 (787)
Q Consensus 298 ~p~vLIl~PtreLa~Qi~~~~~~~~~~-------~~i~v~~~~gg~~~~~~~~~l~---------~~~dIIV~Tp~~L~~ 361 (787)
...+||.+|++.-+..+++.+.+.+.. .++.+..++|+.+..++...+. ....|||||.
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~----- 377 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN----- 377 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT-----
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc-----
Confidence 567999999999999999888864322 4788999999988766543332 1358999993
Q ss_pred HHHhccccccceeEEEE
Q 003910 362 MLKMKALTMSRVTYLVL 378 (787)
Q Consensus 362 ~l~~~~~~l~~i~~lVi 378 (787)
.+. ..+++..+.+||-
T Consensus 378 iae-~GidIp~v~~VId 393 (773)
T 2xau_A 378 IAE-TSLTIDGIVYVVD 393 (773)
T ss_dssp HHH-HTCCCTTEEEEEE
T ss_pred HHH-hCcCcCCeEEEEe
Confidence 333 3456778887764
No 282
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=54.39 E-value=4.7 Score=34.15 Aligned_cols=37 Identities=19% Similarity=0.329 Sum_probs=32.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCC
Q 003910 469 DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKD 505 (787)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~ 505 (787)
...+++|||.+-..+...+..|...|+++..+.|++.
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 4568999999988899999999999999999988753
No 283
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=54.29 E-value=5.4 Score=35.46 Aligned_cols=38 Identities=13% Similarity=0.259 Sum_probs=32.2
Q ss_pred CC-CCEEEEe-cccccHHHHHHHHHHcCCceeeccCCCCH
Q 003910 469 DD-GDVLVFA-SKKTTVDEIESQLAQKGFKAAALHGDKDQ 506 (787)
Q Consensus 469 ~~-~kvLVF~-~s~~~a~~l~~~L~~~g~~v~~lhg~~~~ 506 (787)
.. .++|||| .+-..+..++..|...|+.+..|.|++..
T Consensus 87 ~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 87 LNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp TTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred cCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHH
Confidence 44 6899999 57778889999999999999999998754
No 284
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=53.76 E-value=5.2 Score=34.38 Aligned_cols=38 Identities=11% Similarity=0.179 Sum_probs=32.5
Q ss_pred cCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCC
Q 003910 467 MIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDK 504 (787)
Q Consensus 467 ~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~ 504 (787)
+..+.+++|+|.+-..+...+..|...||.+..|.|++
T Consensus 53 l~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 53 FNKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp CCTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred hcCCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 33456899999998889999999999999988888875
No 285
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=53.49 E-value=22 Score=39.70 Aligned_cols=50 Identities=12% Similarity=0.010 Sum_probs=29.1
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHH
Q 003910 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLET 318 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~ 318 (787)
.|.-+++.|++|+|||.. ++-++.++..+ .+..++++.- .+-..|+...+
T Consensus 241 ~G~l~li~G~pG~GKT~l-al~~a~~~a~~------~g~~vl~~s~-E~s~~~l~~r~ 290 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTF-VRQQALQWGTA------MGKKVGLAML-EESVEETAEDL 290 (503)
T ss_dssp TTCEEEEEESSCHHHHHH-HHHHHHHHTTT------SCCCEEEEES-SSCHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHH-HHHHHHHHHHh------cCCcEEEEec-cCCHHHHHHHH
Confidence 345688999999999974 55555555332 1334666543 22334554443
No 286
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=53.46 E-value=5.6 Score=33.83 Aligned_cols=37 Identities=11% Similarity=0.198 Sum_probs=32.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCC
Q 003910 469 DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKD 505 (787)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~ 505 (787)
...+++|||.+-..+...+..|...|+.+..+.|++.
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 4568999999998999999999999999999988753
No 287
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=53.25 E-value=12 Score=41.91 Aligned_cols=31 Identities=29% Similarity=0.142 Sum_probs=22.9
Q ss_pred CcHHHHHHHHH-HHcCCCEEEEccCCCchhHH
Q 003910 248 PTSIQCQALPI-ILSGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 248 ptp~Q~~ai~~-il~grdvii~a~TGsGKTla 278 (787)
+++.+...+.. +..+..++++++||||||..
T Consensus 245 ~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 245 VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 44555555544 45778899999999999974
No 288
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=53.02 E-value=22 Score=43.14 Aligned_cols=71 Identities=13% Similarity=0.293 Sum_probs=46.7
Q ss_pred CCCEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhcCCccEEEEeh-hhh----cc-C-CCCC
Q 003910 470 DGDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VAA----RG-L-DIKS 538 (787)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-v~~----rG-l-Dip~ 538 (787)
.+++||.|+++.-+..+...|... ++.+..+||+.+...+...+. ...+|+|+|. .+. ++ + .+..
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~----~~~~IvI~Tp~~L~~~l~~~~~~~l~~ 371 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHH----HHCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhc----cCCCEEEecHHHHHHHHHcCccccccC
Confidence 568999999998888877777664 899999999987655332222 1368999993 222 22 3 5666
Q ss_pred ccEEEE
Q 003910 539 IKSVVN 544 (787)
Q Consensus 539 v~~VI~ 544 (787)
+++||.
T Consensus 372 ~~liVi 377 (936)
T 4a2w_A 372 FTLMIF 377 (936)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777775
No 289
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=52.93 E-value=13 Score=43.07 Aligned_cols=67 Identities=21% Similarity=0.261 Sum_probs=48.7
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhccccccceeEE
Q 003910 297 EGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYL 376 (787)
Q Consensus 297 ~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~l 376 (787)
.+..+||.++|+.-+.++++.+++. ++.+..++|+.+..+. ...+.+||||| +.+.+. +++. +++|
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~----g~~v~~lHG~l~q~er---~~~~~~VLVAT-----dVaerG-IDId-V~~V 460 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGL----GINAVAYYRGLDVSVI---PTIGDVVVVAT-----DALMTG-YTGD-FDSV 460 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECTTSCGGGS---CSSSCEEEEEC-----TTHHHH-CCCC-BSEE
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhC----CCcEEEecCCCCHHHH---HhCCCcEEEEC-----ChHHcc-CCCC-CcEE
Confidence 4567999999999999888877764 7899999998876542 12457999999 344333 3354 7766
Q ss_pred E
Q 003910 377 V 377 (787)
Q Consensus 377 V 377 (787)
|
T Consensus 461 I 461 (666)
T 3o8b_A 461 I 461 (666)
T ss_dssp E
T ss_pred E
Confidence 6
No 290
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=52.60 E-value=14 Score=39.71 Aligned_cols=42 Identities=24% Similarity=0.358 Sum_probs=28.3
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHH
Q 003910 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTREL 310 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreL 310 (787)
.+.+++++++||+|||.. +-.++..+.. .+..++|+=|..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~-~~~~~~~~~~-------~~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFT-AKMLLLREYM-------QGSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHH-HHHHHHHHHT-------TTCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHH-HHHHHHHHHH-------CCCEEEEEeCCcCH
Confidence 457999999999999975 3333333322 25567888787553
No 291
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=52.34 E-value=79 Score=32.47 Aligned_cols=17 Identities=29% Similarity=0.380 Sum_probs=13.8
Q ss_pred CCCEEEEccCCCchhHH
Q 003910 262 GRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 262 grdvii~a~TGsGKTla 278 (787)
++-+++++++|+|||..
T Consensus 98 ~~vi~i~G~~G~GKTT~ 114 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTT 114 (297)
T ss_dssp SEEEEEECSSCSSTTHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45577889999999975
No 292
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=52.29 E-value=17 Score=42.31 Aligned_cols=68 Identities=18% Similarity=0.229 Sum_probs=46.1
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhc-CCcEEEeCHHHHHHHHHhccccccceeEE
Q 003910 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYL 376 (787)
Q Consensus 298 ~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~-~~dIIV~Tp~~L~~~l~~~~~~l~~i~~l 376 (787)
+.++||.||++.-+..+++.+++. ++++..++|. .....+..+.. ..+||||| +.+.. .+++. +.+|
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~-eR~~v~~~F~~g~~~VLVaT-----dv~e~-GIDip-v~~V 477 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRK-SYDTEYPKCKNGDWDFVITT-----DISEM-GANFG-ASRV 477 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSS-SHHHHGGGGGTCCCSEEEEC-----GGGGT-TCCCC-CSEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChH-HHHHHHHHHHCCCceEEEEC-----chhhc-ceeeC-CcEE
Confidence 567999999999999888777665 7888888883 33333333333 47899999 33332 34565 6665
Q ss_pred E
Q 003910 377 V 377 (787)
Q Consensus 377 V 377 (787)
|
T Consensus 478 I 478 (673)
T 2wv9_A 478 I 478 (673)
T ss_dssp E
T ss_pred E
Confidence 5
No 293
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=52.26 E-value=8.9 Score=49.24 Aligned_cols=120 Identities=18% Similarity=0.322 Sum_probs=65.6
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHH
Q 003910 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ 341 (787)
Q Consensus 262 grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~ 341 (787)
|+-+.+.+|.|||||.. +++++....+ .+..++++.+-..|.... ++++ |+.+
T Consensus 1431 g~~iei~g~~~sGkttl-~~~~~a~~~~-------~g~~~~~i~~e~~~~~~~---~~~~----Gv~~------------ 1483 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTL-TLQVIAAAQR-------EGKTCAFIDAEHALDPIY---ARKL----GVDI------------ 1483 (1706)
T ss_dssp TSEEEEECSTTSSHHHH-HHHHHHHHHH-------TTCCEEEECTTSCCCHHH---HHHT----TCCG------------
T ss_pred CCEEEEEcCCCCCHHHH-HHHHHHHHHh-------cCCeEEEEecCCCCCHHH---HHHc----CCCH------------
Confidence 36689999999999986 5555554432 356678888766665433 4444 4432
Q ss_pred HHHHhcCCcEEEeCHH---HHHHHHHhccccccceeEEEEechhhhhcCC----------C-------hHHHHHHhhhcC
Q 003910 342 FKELKAGCEIVIATPG---RLIDMLKMKALTMSRVTYLVLDEADRMFDLG----------F-------EPQIRSIVGQIR 401 (787)
Q Consensus 342 ~~~l~~~~dIIV~Tp~---~L~~~l~~~~~~l~~i~~lViDEah~m~~~~----------f-------~~~i~~il~~~~ 401 (787)
.+++|.-|. ..+..+.. .+.-..+++||||.+-.+.... . ...++++...+.
T Consensus 1484 -------~~l~~~~p~~~e~~l~~~~~-~~~s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~~~~~ 1555 (1706)
T 3cmw_A 1484 -------DNLLCSQPDTGEQALEICDA-LARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK 1555 (1706)
T ss_dssp -------GGCEEECCSSHHHHHHHHHH-HHHHTCCSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHHHHHH
T ss_pred -------HHeEEeCCCcHHHHHHHHHH-HHHcCCCCEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHHHHHHH
Confidence 124444442 22222221 1112357889999988664321 1 122334444444
Q ss_pred CCceEEEEeccCcHH
Q 003910 402 PDRQTLLFSATMPRK 416 (787)
Q Consensus 402 ~~~q~ll~SAT~~~~ 416 (787)
...-+++|...+...
T Consensus 1556 ~~~~~~i~~~~~~~~ 1570 (1706)
T 3cmw_A 1556 QSNTLLIFINQIRMK 1570 (1706)
T ss_dssp HHTCEEEEEECBC--
T ss_pred hCCcEEEEeeccccc
Confidence 444566777666543
No 294
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.81 E-value=19 Score=39.44 Aligned_cols=54 Identities=19% Similarity=0.321 Sum_probs=31.7
Q ss_pred CccCCccccCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHHcCCCEEEEccCCCchhHH
Q 003910 222 RPVKTFEDCGFSTQLMHAISKQ---GYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 222 ~pi~sf~~~~l~~~l~~~l~~~---g~~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla 278 (787)
.|-.+|++.+=-+.+.+.|... .+..|--++...++ --+.+|+.+|+|+|||+.
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~---~prGvLLyGPPGTGKTlL 232 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIK---PPKGVILYGAPGTGKTLL 232 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCC---CCSEEEEESSTTTTHHHH
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCCCceECCCCchHHHH
Confidence 4567899986555555555432 11222222222211 236899999999999975
No 295
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=51.44 E-value=12 Score=43.48 Aligned_cols=70 Identities=16% Similarity=0.377 Sum_probs=49.7
Q ss_pred CCEEEEecccccHHHHHHHHHHc----CCceeeccCCCCHHHHHHHHHHhhcCCccEEEEeh-hh----hcc-C-CCCCc
Q 003910 471 GDVLVFASKKTTVDEIESQLAQK----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VA----ARG-L-DIKSI 539 (787)
Q Consensus 471 ~kvLVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-v~----~rG-l-Dip~v 539 (787)
+++||.++++.-+......|... ++.+..++|+.+...+...+. . ..+|||+|. .+ ..+ + ++..+
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~---~-~~~Iiv~Tp~~L~~~l~~~~~~~l~~~ 137 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIV---E-NNDIIILTPQILVNNLKKGTIPSLSIF 137 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHH---H-TCSEEEECHHHHHHHHHTTSSCCGGGC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhc---c-CCCEEEECHHHHHHHHhcCcccccccc
Confidence 68999999998888888877765 789999999886533222221 2 478999993 22 233 3 56777
Q ss_pred cEEEE
Q 003910 540 KSVVN 544 (787)
Q Consensus 540 ~~VI~ 544 (787)
++||.
T Consensus 138 ~~vVi 142 (696)
T 2ykg_A 138 TLMIF 142 (696)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 88876
No 296
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=51.10 E-value=30 Score=35.14 Aligned_cols=17 Identities=41% Similarity=0.591 Sum_probs=15.2
Q ss_pred CCCEEEEccCCCchhHH
Q 003910 262 GRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 262 grdvii~a~TGsGKTla 278 (787)
...+++.+|+|+|||..
T Consensus 50 ~~~vll~G~~GtGKT~l 66 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEI 66 (310)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 57899999999999975
No 297
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=51.04 E-value=18 Score=36.91 Aligned_cols=46 Identities=17% Similarity=0.241 Sum_probs=28.9
Q ss_pred ccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHH---------HcCCCEEEEccCCCchhHH
Q 003910 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPII---------LSGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 223 pi~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~i---------l~grdvii~a~TGsGKTla 278 (787)
|-.+|.++.-...+++.|...- ..+.. ...+.+++.+|+|+|||..
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i----------~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l 70 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMV----------ILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLL 70 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHT----------HHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHH----------HhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHH
Confidence 4467888766666666554320 01111 1247899999999999975
No 298
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=51.02 E-value=16 Score=40.80 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=21.4
Q ss_pred HHHHHHHHcCCCEEEEccCCCchhHH
Q 003910 253 CQALPIILSGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 253 ~~ai~~il~grdvii~a~TGsGKTla 278 (787)
..++-.+..+.++++++|+|+|||..
T Consensus 32 ~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 32 RLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp HHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred HHHHHHHhcCCeeEeecCchHHHHHH
Confidence 44556677889999999999999964
No 299
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=50.31 E-value=9.8 Score=38.27 Aligned_cols=18 Identities=22% Similarity=0.422 Sum_probs=15.8
Q ss_pred cCCCEEEEccCCCchhHH
Q 003910 261 SGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla 278 (787)
....+++.+++|+|||..
T Consensus 28 ~~~~vll~G~~GtGKt~l 45 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELI 45 (265)
T ss_dssp SCSCEEEECCTTSCHHHH
T ss_pred CCCCEEEECCCCCcHHHH
Confidence 457899999999999964
No 300
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=50.03 E-value=11 Score=39.44 Aligned_cols=23 Identities=30% Similarity=0.235 Sum_probs=18.9
Q ss_pred HHHHHcCCCEEEEccCCCchhHH
Q 003910 256 LPIILSGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 256 i~~il~grdvii~a~TGsGKTla 278 (787)
+..+..+.++++.+++|+|||..
T Consensus 40 ~~~l~~~~~vll~G~pGtGKT~l 62 (331)
T 2r44_A 40 LIGICTGGHILLEGVPGLAKTLS 62 (331)
T ss_dssp HHHHHHTCCEEEESCCCHHHHHH
T ss_pred HHHHHcCCeEEEECCCCCcHHHH
Confidence 34455688999999999999964
No 301
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=49.88 E-value=40 Score=40.02 Aligned_cols=69 Identities=10% Similarity=0.084 Sum_probs=51.6
Q ss_pred CCCEEEEecccccHHHHHHHHHH----cCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEeh-hh-----h-------c
Q 003910 470 DGDVLVFASKKTTVDEIESQLAQ----KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VA-----A-------R 532 (787)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~----~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-v~-----~-------r 532 (787)
...++|.|++..-|.++++.+.. .|+.+.++.|+++..+|.... .++|+|+|. .+ . .
T Consensus 124 g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~~~~~ 197 (844)
T 1tf5_A 124 GKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMVLYKE 197 (844)
T ss_dssp SSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSGG
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhhcchh
Confidence 45899999999988877776654 589999999999987665543 278999994 22 1 1
Q ss_pred cCCCCCccEEEE
Q 003910 533 GLDIKSIKSVVN 544 (787)
Q Consensus 533 GlDip~v~~VI~ 544 (787)
.+++..+.++|.
T Consensus 198 ~l~lr~~~~lVl 209 (844)
T 1tf5_A 198 QMVQRPLHFAVI 209 (844)
T ss_dssp GCCCCCCCEEEE
T ss_pred hhcccCCCEEEE
Confidence 356677887774
No 302
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=49.48 E-value=17 Score=48.90 Aligned_cols=48 Identities=21% Similarity=0.252 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHH----HHHHHHcCCCEEEEccCCCchhHHHH
Q 003910 232 FSTQLMHAISKQGYEKPTSIQCQ----ALPIILSGRDIIGIAKTGSGKTAAFV 280 (787)
Q Consensus 232 l~~~l~~~l~~~g~~~ptp~Q~~----ai~~il~grdvii~a~TGsGKTla~l 280 (787)
+...+.+.+.+.++. +++.+.. ....+...+.+++++|||+|||.++-
T Consensus 890 l~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 890 IVQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHH
Confidence 344566667777764 6666532 33445567889999999999998743
No 303
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=49.41 E-value=5.1 Score=46.75 Aligned_cols=70 Identities=16% Similarity=0.344 Sum_probs=47.8
Q ss_pred CCEEEEecccccHHHH-HHHHHHcC---CceeeccCCCCHHHHHHHHHHhhcCCccEEEEeh-hhhc-----------cC
Q 003910 471 GDVLVFASKKTTVDEI-ESQLAQKG---FKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VAAR-----------GL 534 (787)
Q Consensus 471 ~kvLVF~~s~~~a~~l-~~~L~~~g---~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-v~~r-----------Gl 534 (787)
+++||.+|++.-+..+ .+.|.... +.+..++|+....++...+. +..+|||+|. .+.. .+
T Consensus 57 ~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~ 132 (699)
T 4gl2_A 57 GKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAGV 132 (699)
T ss_dssp CCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH----HSCSEEEEEHHHHHHHTC--------CC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh----cCCCEEEECHHHHHHHHhccccccccce
Confidence 6899999999988888 88777653 89999999987654433332 4689999993 3332 24
Q ss_pred CCCCccEEEE
Q 003910 535 DIKSIKSVVN 544 (787)
Q Consensus 535 Dip~v~~VI~ 544 (787)
.+..+++||.
T Consensus 133 ~~~~~~lvVi 142 (699)
T 4gl2_A 133 QLSDFSLIII 142 (699)
T ss_dssp CGGGCSEEEE
T ss_pred ecccCcEEEE
Confidence 6677888875
No 304
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=48.60 E-value=24 Score=34.51 Aligned_cols=75 Identities=17% Similarity=0.127 Sum_probs=41.6
Q ss_pred cccCCCHHHHHHHHHHcCceeccCCCCCccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC----CCEEEEcc
Q 003910 195 SISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSG----RDIIGIAK 270 (787)
Q Consensus 195 ~i~~~s~~~~~~~~~~~~i~v~g~~~P~pi~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~g----rdvii~a~ 270 (787)
.+..|+-.+|-..+-+.- .+. +=...+.+-|+-+++ .+..+ ...+..++.+ +.+++.+|
T Consensus 4 ~~~~m~~~~~i~~~~~~~---~~~------------~~w~~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GP 66 (212)
T 1tue_A 4 FGSGSNMSQWIRFRCSKI---DEG------------GDWRPIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGP 66 (212)
T ss_dssp --CCSCHHHHHHHHHHTS---CSC------------CCSHHHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESC
T ss_pred HHHhcCHHHHHHHHHHHc---cCC------------CCHHHHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECC
Confidence 466788888876664321 111 112345555554443 34444 4445555554 25889999
Q ss_pred CCCchhHHHHHHHHHHH
Q 003910 271 TGSGKTAAFVLPMIVHI 287 (787)
Q Consensus 271 TGsGKTla~llp~l~~l 287 (787)
.|+|||.. ...++..+
T Consensus 67 PGtGKTt~-a~ala~~l 82 (212)
T 1tue_A 67 ANTGKSYF-GMSFIHFI 82 (212)
T ss_dssp GGGCHHHH-HHHHHHHH
T ss_pred CCCCHHHH-HHHHHHHh
Confidence 99999974 34454444
No 305
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=48.46 E-value=12 Score=32.08 Aligned_cols=38 Identities=18% Similarity=0.295 Sum_probs=32.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHHcCCc-eeeccCCCCH
Q 003910 469 DDGDVLVFASKKTTVDEIESQLAQKGFK-AAALHGDKDQ 506 (787)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~g~~-v~~lhg~~~~ 506 (787)
...+++|||.+-..+..++..|...|+. +..|.|++..
T Consensus 57 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 95 (108)
T 1gmx_A 57 FDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEA 95 (108)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHHH
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHHH
Confidence 4568999999988999999999999995 8889888643
No 306
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=48.34 E-value=35 Score=39.68 Aligned_cols=73 Identities=15% Similarity=0.281 Sum_probs=53.2
Q ss_pred EEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChH---HHHHHHhc---CCcEEEeCHHHHHHHHHhcccccccee
Q 003910 301 GVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKL---DQFKELKA---GCEIVIATPGRLIDMLKMKALTMSRVT 374 (787)
Q Consensus 301 vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~---~~~~~l~~---~~dIIV~Tp~~L~~~l~~~~~~l~~i~ 374 (787)
.+|+++++.-+.++++.+.+. ++.+..++|+.+.. .+...+.. ..+|||||. .+. ..+++ .+.
T Consensus 323 ~iIf~~s~~~ie~la~~L~~~----g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATd-----i~e-~GlDi-~v~ 391 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEIR----GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATD-----AIG-MGLNL-SIR 391 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECG-----GGG-SSCCC-CBS
T ss_pred CEEEEcCHHHHHHHHHHHHhc----CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCc-----HHH-CCcCc-Ccc
Confidence 466789988888877777764 78999999999876 34445553 379999993 333 34567 899
Q ss_pred EEEEechhhh
Q 003910 375 YLVLDEADRM 384 (787)
Q Consensus 375 ~lViDEah~m 384 (787)
+||+-.+.+.
T Consensus 392 ~VI~~~~~k~ 401 (677)
T 3rc3_A 392 RIIFYSLIKP 401 (677)
T ss_dssp EEEESCSBC-
T ss_pred EEEECCcccc
Confidence 9998887654
No 307
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=48.27 E-value=28 Score=36.85 Aligned_cols=18 Identities=44% Similarity=0.534 Sum_probs=15.5
Q ss_pred cCCCEEEEccCCCchhHH
Q 003910 261 SGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla 278 (787)
....+++.+|+|+|||..
T Consensus 50 ~~~~vll~GppGtGKT~l 67 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLL 67 (363)
T ss_dssp CCCCEEEECCTTSSHHHH
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 346899999999999975
No 308
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=48.14 E-value=31 Score=35.11 Aligned_cols=43 Identities=14% Similarity=0.197 Sum_probs=28.8
Q ss_pred HHHHHHHHHCCCCCCcHHHHHH-HHHHHcCC-----CEEEEccCCCchhHHH
Q 003910 234 TQLMHAISKQGYEKPTSIQCQA-LPIILSGR-----DIIGIAKTGSGKTAAF 279 (787)
Q Consensus 234 ~~l~~~l~~~g~~~ptp~Q~~a-i~~il~gr-----dvii~a~TGsGKTla~ 279 (787)
..+.+-|+.+||. |++... +..++.++ .+++.+|.|+|||+.+
T Consensus 73 n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 73 NRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIA 121 (267)
T ss_dssp CHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHH
Confidence 3577777777766 555333 34444443 4899999999999753
No 309
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=47.76 E-value=17 Score=32.20 Aligned_cols=37 Identities=14% Similarity=0.242 Sum_probs=32.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHHcCCc-eeeccCCCC
Q 003910 469 DDGDVLVFASKKTTVDEIESQLAQKGFK-AAALHGDKD 505 (787)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~g~~-v~~lhg~~~ 505 (787)
...++||||.+-..+..++..|...|+. +..|.|++.
T Consensus 81 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 81 QSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp TTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 4568999999988899999999999995 888999874
No 310
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=46.95 E-value=11 Score=36.23 Aligned_cols=19 Identities=26% Similarity=0.169 Sum_probs=16.0
Q ss_pred HcCCCEEEEccCCCchhHH
Q 003910 260 LSGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 260 l~grdvii~a~TGsGKTla 278 (787)
..++.+++++++|+|||..
T Consensus 23 ~~~~~i~l~G~~GsGKsTl 41 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTL 41 (199)
T ss_dssp -CCCEEEEECCTTSCHHHH
T ss_pred CCCCEEEEEcCCCCCHHHH
Confidence 3567899999999999975
No 311
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=46.37 E-value=12 Score=39.80 Aligned_cols=20 Identities=40% Similarity=0.469 Sum_probs=17.5
Q ss_pred HHcCCCEEEEccCCCchhHH
Q 003910 259 ILSGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 259 il~grdvii~a~TGsGKTla 278 (787)
+..|..++++++||+|||..
T Consensus 172 i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHH
T ss_pred HhcCCEEEEECCCCCCHHHH
Confidence 45788999999999999974
No 312
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=46.33 E-value=32 Score=42.86 Aligned_cols=59 Identities=10% Similarity=0.006 Sum_probs=40.4
Q ss_pred CEEEEccCCCchhHHHHHHHHHHHhcCcc----cccCCCCEEEEEcCcHHHHHHHHHHHHHHh
Q 003910 264 DIIGIAKTGSGKTAAFVLPMIVHIMDQPE----LQKEEGPIGVICAPTRELAHQIYLETKKFA 322 (787)
Q Consensus 264 dvii~a~TGsGKTla~llp~l~~l~~~~~----~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~ 322 (787)
..+|.|.-|||||.+-..-++..|+.... -.......+|+|+=|+.-|.++.+.+.+..
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L 80 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHH
Confidence 45999999999998755555555543210 000122469999999999999888877653
No 313
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=46.25 E-value=17 Score=40.00 Aligned_cols=82 Identities=11% Similarity=0.176 Sum_probs=55.5
Q ss_pred EecCCCcchHHHHHHhcCCcCCCCCEEEEecccccHHHHHHHHHHcCCc-eeeccCCCCHHHHHHHHHHhhcCCccEEEE
Q 003910 448 HVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFK-AAALHGDKDQASRMEILQKFKSGVYHVLIA 526 (787)
Q Consensus 448 ~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~-v~~lhg~~~~~eR~~~l~~F~~G~~~VLVa 526 (787)
...+....|-...+..+... ..++||.|+++.-+..+.+.|...++. +..+||+... ..+|+|+
T Consensus 113 l~~~TGsGKT~~~l~~i~~~--~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~-------------~~~Ivv~ 177 (472)
T 2fwr_A 113 IVLPTGSGKTHVAMAAINEL--STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-------------LKPLTVS 177 (472)
T ss_dssp EECCTTSCHHHHHHHHHHHH--CSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBC-------------CCSEEEE
T ss_pred EEeCCCCCHHHHHHHHHHHc--CCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCC-------------cCCEEEE
Confidence 34445566655444333332 569999999999999999999888888 9999998753 4689999
Q ss_pred eh-hhhccCC-C-CCccEEEE
Q 003910 527 TD-VAARGLD-I-KSIKSVVN 544 (787)
Q Consensus 527 T~-v~~rGlD-i-p~v~~VI~ 544 (787)
|. .+..-++ + ..+.+||.
T Consensus 178 T~~~l~~~~~~~~~~~~liIv 198 (472)
T 2fwr_A 178 TYDSAYVNAEKLGNRFMLLIF 198 (472)
T ss_dssp EHHHHHHTHHHHTTTCSEEEE
T ss_pred EcHHHHHHHHHhcCCCCEEEE
Confidence 93 3333221 1 23566664
No 314
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=46.16 E-value=6.5 Score=49.67 Aligned_cols=44 Identities=20% Similarity=0.348 Sum_probs=31.6
Q ss_pred ccceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEeccC
Q 003910 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATM 413 (787)
Q Consensus 370 l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SAT~ 413 (787)
+++-.+||+|||-.-+|..-+..+...+.....++-+|+.+.-+
T Consensus 1233 lr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRL 1276 (1321)
T 4f4c_A 1233 VRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRL 1276 (1321)
T ss_dssp HSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSS
T ss_pred HhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCH
Confidence 45667899999987777666777777777776676666655543
No 315
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=45.05 E-value=22 Score=39.11 Aligned_cols=45 Identities=20% Similarity=0.134 Sum_probs=27.8
Q ss_pred CccCCccccCCCHHHHHHHHHCCCCCCcHHHHHHHHHHHcC----CCEEEEccCCCchhHH
Q 003910 222 RPVKTFEDCGFSTQLMHAISKQGYEKPTSIQCQALPIILSG----RDIIGIAKTGSGKTAA 278 (787)
Q Consensus 222 ~pi~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~~ai~~il~g----rdvii~a~TGsGKTla 278 (787)
.|-..|+++.-...+.+.+.. .+..+..+ +.+|+.+|+|+|||..
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~------------~~~~~~~~~~~~~~iLl~GppGtGKT~l 79 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGV------------IVELIKSKKMAGRAVLLAGPPGTGKTAL 79 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHH------------HHHHHHTTCCTTCEEEEECCTTSSHHHH
T ss_pred ChhhchhhccCHHHHHHHHHH------------HHHHHHhCCCCCCeEEEECCCcCCHHHH
Confidence 344556666555555544432 12333333 5799999999999975
No 316
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=44.72 E-value=11 Score=35.57 Aligned_cols=18 Identities=11% Similarity=0.326 Sum_probs=15.4
Q ss_pred cCCCEEEEccCCCchhHH
Q 003910 261 SGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla 278 (787)
.|+-+++++|+|+|||..
T Consensus 4 ~g~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467789999999999974
No 317
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=44.29 E-value=15 Score=39.31 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=19.2
Q ss_pred HHHHHHcCCC--EEEEccCCCchhHH
Q 003910 255 ALPIILSGRD--IIGIAKTGSGKTAA 278 (787)
Q Consensus 255 ai~~il~grd--vii~a~TGsGKTla 278 (787)
.+..++.|.| ++..++||||||.+
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyT 121 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYT 121 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEE
Confidence 4677788987 55578999999976
No 318
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=44.28 E-value=9 Score=35.72 Aligned_cols=17 Identities=29% Similarity=0.292 Sum_probs=14.5
Q ss_pred CCCEEEEccCCCchhHH
Q 003910 262 GRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 262 grdvii~a~TGsGKTla 278 (787)
++-+++++++|||||..
T Consensus 3 ~~~i~l~G~~GsGKST~ 19 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGI 19 (178)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 45689999999999975
No 319
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=44.22 E-value=28 Score=41.27 Aligned_cols=70 Identities=7% Similarity=-0.015 Sum_probs=50.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHH----cCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEeh-hh-----hcc-----
Q 003910 469 DDGDVLVFASKKTTVDEIESQLAQ----KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VA-----ARG----- 533 (787)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~----~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-v~-----~rG----- 533 (787)
...+++|.|++..-|.++++.+.. .++.+.++.|+++...|.... .++|+|+|. .+ ..+
T Consensus 114 ~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpgrl~fDyLrd~~~~~~ 187 (853)
T 2fsf_A 114 TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNNEYGFDYLRDNMAFSP 187 (853)
T ss_dssp TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSG
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCchhhHHHHHhhhhccH
Confidence 345899999999988777766644 589999999999986555433 378999995 22 222
Q ss_pred --CCCCCccEEEE
Q 003910 534 --LDIKSIKSVVN 544 (787)
Q Consensus 534 --lDip~v~~VI~ 544 (787)
+....+.++|.
T Consensus 188 ~~~~~~~l~~lVl 200 (853)
T 2fsf_A 188 EERVQRKLHYALV 200 (853)
T ss_dssp GGCCCCSCCEEEE
T ss_pred hHhcccCCcEEEE
Confidence 55677777774
No 320
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=43.51 E-value=24 Score=36.50 Aligned_cols=18 Identities=22% Similarity=0.374 Sum_probs=15.7
Q ss_pred cCCCEEEEccCCCchhHH
Q 003910 261 SGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla 278 (787)
....+++.+++|+|||..
T Consensus 24 ~~~~vLi~Ge~GtGKt~l 41 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELV 41 (304)
T ss_dssp TTSCEEEESCTTSCHHHH
T ss_pred CCCcEEEECCCCchHHHH
Confidence 457899999999999975
No 321
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=43.49 E-value=8.7 Score=36.02 Aligned_cols=19 Identities=26% Similarity=0.307 Sum_probs=16.4
Q ss_pred HcCCCEEEEccCCCchhHH
Q 003910 260 LSGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 260 l~grdvii~a~TGsGKTla 278 (787)
..++.+++++++|+|||.+
T Consensus 9 ~~~~~i~i~G~~GsGKst~ 27 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTL 27 (180)
T ss_dssp CCCCCEEEECSTTSSHHHH
T ss_pred ccCCeEEEEeCCCCCHHHH
Confidence 3567899999999999975
No 322
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=43.32 E-value=12 Score=39.56 Aligned_cols=16 Identities=25% Similarity=0.478 Sum_probs=13.9
Q ss_pred CCEEEEccCCCchhHH
Q 003910 263 RDIIGIAKTGSGKTAA 278 (787)
Q Consensus 263 rdvii~a~TGsGKTla 278 (787)
+-++|++|||+|||..
T Consensus 41 ~lIvI~GPTgsGKTtL 56 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRL 56 (339)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 4688999999999975
No 323
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=43.09 E-value=14 Score=35.52 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=17.4
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHH
Q 003910 261 SGRDIIGIAKTGSGKTAAFVLPMIVHI 287 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla~llp~l~~l 287 (787)
.++-+++++|+|+|||.. +-+|..+
T Consensus 3 ~g~~i~lvGpsGaGKSTL--l~~L~~~ 27 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTL--LKKLFQE 27 (198)
T ss_dssp --CCEEEECCTTSSHHHH--HHHHHHH
T ss_pred CCCEEEEECCCCCCHHHH--HHHHHhh
Confidence 467899999999999974 3344443
No 324
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=42.66 E-value=17 Score=44.94 Aligned_cols=65 Identities=15% Similarity=0.123 Sum_probs=50.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEe-----hhhhccC-CCCCccEE
Q 003910 469 DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIAT-----DVAARGL-DIKSIKSV 542 (787)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT-----~v~~rGl-Dip~v~~V 542 (787)
..+++||.+|++.-+..++..|....-.+..++|+++ .++..+|||+| +.+.++- .+..+.+|
T Consensus 226 ~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~-----------~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lV 294 (1108)
T 3l9o_A 226 NKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT-----------INPDAGCLVMTTEILRSMLYRGSEVMREVAWV 294 (1108)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCB-----------CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEE
T ss_pred cCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccc-----------cCCCCCEEEeChHHHHHHHHcCccccccCCEE
Confidence 4568999999999999999999887778999999987 24568899999 3444443 35567777
Q ss_pred EE
Q 003910 543 VN 544 (787)
Q Consensus 543 I~ 544 (787)
|+
T Consensus 295 VI 296 (1108)
T 3l9o_A 295 IF 296 (1108)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 325
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=42.58 E-value=14 Score=34.74 Aligned_cols=17 Identities=35% Similarity=0.384 Sum_probs=14.9
Q ss_pred CCCEEEEccCCCchhHH
Q 003910 262 GRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 262 grdvii~a~TGsGKTla 278 (787)
.+.+++++++|||||..
T Consensus 5 ~~~i~l~G~~GsGKst~ 21 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSV 21 (185)
T ss_dssp CCEEEEECSTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 46789999999999975
No 326
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=42.47 E-value=17 Score=38.26 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=19.0
Q ss_pred HHHHHHcCCC--EEEEccCCCchhHH
Q 003910 255 ALPIILSGRD--IIGIAKTGSGKTAA 278 (787)
Q Consensus 255 ai~~il~grd--vii~a~TGsGKTla 278 (787)
.+..++.|.+ ++..++||||||.+
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyT 94 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHT 94 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceE
Confidence 4566778887 56679999999976
No 327
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=42.45 E-value=36 Score=30.86 Aligned_cols=37 Identities=8% Similarity=0.081 Sum_probs=31.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHHcCC-ceeeccCCCC
Q 003910 469 DDGDVLVFASKKTTVDEIESQLAQKGF-KAAALHGDKD 505 (787)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~g~-~v~~lhg~~~ 505 (787)
...++||||.+-..+..++..|...|+ ++..|.|++.
T Consensus 79 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp --CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 456899999998888999999999999 5899999874
No 328
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=42.01 E-value=11 Score=34.52 Aligned_cols=15 Identities=33% Similarity=0.352 Sum_probs=13.0
Q ss_pred CEEEEccCCCchhHH
Q 003910 264 DIIGIAKTGSGKTAA 278 (787)
Q Consensus 264 dvii~a~TGsGKTla 278 (787)
-+++++++|||||..
T Consensus 3 ~I~l~G~~GsGKsT~ 17 (179)
T 3lw7_A 3 VILITGMPGSGKSEF 17 (179)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999975
No 329
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=41.48 E-value=12 Score=35.24 Aligned_cols=18 Identities=17% Similarity=0.335 Sum_probs=14.8
Q ss_pred cCCCEEEEccCCCchhHH
Q 003910 261 SGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla 278 (787)
.+.-+++++++|||||.+
T Consensus 2 ~~~~I~i~G~~GsGKsT~ 19 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTS 19 (192)
T ss_dssp -CCEEEEECCTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 356789999999999975
No 330
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=41.40 E-value=17 Score=38.61 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=18.8
Q ss_pred HHHHHHcCCC--EEEEccCCCchhHH
Q 003910 255 ALPIILSGRD--IIGIAKTGSGKTAA 278 (787)
Q Consensus 255 ai~~il~grd--vii~a~TGsGKTla 278 (787)
.|..++.|.+ ++..++||||||.+
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyT 111 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYS 111 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHH
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeE
Confidence 4566778887 46678999999976
No 331
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=41.05 E-value=19 Score=38.98 Aligned_cols=24 Identities=38% Similarity=0.515 Sum_probs=19.6
Q ss_pred HHHHHHcCCC--EEEEccCCCchhHH
Q 003910 255 ALPIILSGRD--IIGIAKTGSGKTAA 278 (787)
Q Consensus 255 ai~~il~grd--vii~a~TGsGKTla 278 (787)
.|..++.|.| ++..++||||||.+
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyT 157 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFT 157 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceE
Confidence 5777889987 45578999999976
No 332
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=40.78 E-value=15 Score=36.94 Aligned_cols=17 Identities=24% Similarity=0.468 Sum_probs=14.7
Q ss_pred CCCEEEEccCCCchhHH
Q 003910 262 GRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 262 grdvii~a~TGsGKTla 278 (787)
.+.+++.+|+|+|||..
T Consensus 44 ~~~vll~G~~GtGKT~l 60 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLL 60 (268)
T ss_dssp CSCCCCBCSSCSSHHHH
T ss_pred CceEEEECCCCCcHHHH
Confidence 35799999999999975
No 333
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=40.58 E-value=18 Score=33.42 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=17.4
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHH
Q 003910 262 GRDIIGIAKTGSGKTAAFVLPMIVH 286 (787)
Q Consensus 262 grdvii~a~TGsGKTla~llp~l~~ 286 (787)
+..+++++++|||||.. +-+|..
T Consensus 4 ~~~i~l~G~~GsGKSTl--~~~La~ 26 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTI--GRQLAQ 26 (173)
T ss_dssp CCCEEEECCTTSCHHHH--HHHHHH
T ss_pred CCeEEEECCCCCCHHHH--HHHHHH
Confidence 56799999999999974 334444
No 334
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=40.47 E-value=15 Score=35.46 Aligned_cols=18 Identities=28% Similarity=0.326 Sum_probs=15.1
Q ss_pred cCCCEEEEccCCCchhHH
Q 003910 261 SGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla 278 (787)
.|+-+++++|+|+|||..
T Consensus 7 ~g~~i~l~GpsGsGKsTl 24 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTV 24 (208)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 456688999999999975
No 335
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=40.23 E-value=13 Score=35.77 Aligned_cols=20 Identities=15% Similarity=0.195 Sum_probs=16.9
Q ss_pred HHcCCCEEEEccCCCchhHH
Q 003910 259 ILSGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 259 il~grdvii~a~TGsGKTla 278 (787)
+..++-+++++++|+|||..
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl 28 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTL 28 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHH
T ss_pred cccCCEEEEECCCCCCHHHH
Confidence 44677899999999999974
No 336
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=39.95 E-value=18 Score=38.68 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=18.8
Q ss_pred HHHHHHcCCC--EEEEccCCCchhHH
Q 003910 255 ALPIILSGRD--IIGIAKTGSGKTAA 278 (787)
Q Consensus 255 ai~~il~grd--vii~a~TGsGKTla 278 (787)
.+..++.|.+ ++..++||||||.+
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyT 106 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYT 106 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceE
Confidence 4566788887 55678999999976
No 337
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=39.94 E-value=34 Score=33.81 Aligned_cols=65 Identities=12% Similarity=0.214 Sum_probs=47.1
Q ss_pred EecCCCcchHHHHHHhcCCcCCCCCEEEEecccccHHHHHHHHHHcCCc-eeeccCCCCHHHHHHHHHHhhcCCccEEEE
Q 003910 448 HVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFK-AAALHGDKDQASRMEILQKFKSGVYHVLIA 526 (787)
Q Consensus 448 ~~~~~~~~k~~~L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~-v~~lhg~~~~~eR~~~l~~F~~G~~~VLVa 526 (787)
...+....|-...+..+... ..++||+|+++.-+..+.+.|...++. +..++|+.. ...+|+|+
T Consensus 113 l~~~tG~GKT~~a~~~~~~~--~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~-------------~~~~i~v~ 177 (237)
T 2fz4_A 113 IVLPTGSGKTHVAMAAINEL--STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK-------------ELKPLTVS 177 (237)
T ss_dssp EEESSSTTHHHHHHHHHHHS--CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB-------------CCCSEEEE
T ss_pred EEeCCCCCHHHHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC-------------CcCCEEEE
Confidence 33445566655444433332 568999999999999999988887888 888988764 25689999
Q ss_pred e
Q 003910 527 T 527 (787)
Q Consensus 527 T 527 (787)
|
T Consensus 178 T 178 (237)
T 2fz4_A 178 T 178 (237)
T ss_dssp E
T ss_pred e
Confidence 9
No 338
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=39.86 E-value=19 Score=38.46 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=18.8
Q ss_pred HHHHHHcCCC--EEEEccCCCchhHH
Q 003910 255 ALPIILSGRD--IIGIAKTGSGKTAA 278 (787)
Q Consensus 255 ai~~il~grd--vii~a~TGsGKTla 278 (787)
.+..++.|.+ ++..++||||||.+
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyT 101 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHT 101 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhCCCceEEEeecCCCCCCceE
Confidence 4566778887 55679999999976
No 339
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=39.83 E-value=19 Score=38.11 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=18.8
Q ss_pred HHHHHHcCCC--EEEEccCCCchhHH
Q 003910 255 ALPIILSGRD--IIGIAKTGSGKTAA 278 (787)
Q Consensus 255 ai~~il~grd--vii~a~TGsGKTla 278 (787)
.|..++.|.| ++..++||||||.+
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyT 100 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYT 100 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEe
Confidence 4566778887 45678999999976
No 340
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=39.81 E-value=18 Score=38.45 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=18.8
Q ss_pred HHHHHHcCCC--EEEEccCCCchhHH
Q 003910 255 ALPIILSGRD--IIGIAKTGSGKTAA 278 (787)
Q Consensus 255 ai~~il~grd--vii~a~TGsGKTla 278 (787)
.+..++.|.+ ++..++||||||.+
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyT 94 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYT 94 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeE
Confidence 4566788877 55678999999976
No 341
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=39.80 E-value=18 Score=39.20 Aligned_cols=24 Identities=33% Similarity=0.518 Sum_probs=18.7
Q ss_pred HHHHHHcCCC--EEEEccCCCchhHH
Q 003910 255 ALPIILSGRD--IIGIAKTGSGKTAA 278 (787)
Q Consensus 255 ai~~il~grd--vii~a~TGsGKTla 278 (787)
.|..++.|.+ ++..++||||||.+
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyT 171 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHT 171 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeE
Confidence 4566778876 55678999999976
No 342
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=39.67 E-value=20 Score=38.16 Aligned_cols=24 Identities=33% Similarity=0.547 Sum_probs=18.6
Q ss_pred HHHHHHcCCC--EEEEccCCCchhHH
Q 003910 255 ALPIILSGRD--IIGIAKTGSGKTAA 278 (787)
Q Consensus 255 ai~~il~grd--vii~a~TGsGKTla 278 (787)
.+..++.|.+ ++..++||||||.+
T Consensus 81 lv~~~l~G~n~tifAYGqTGSGKTyT 106 (350)
T 2vvg_A 81 LIDAVLEGFNSTIFAYGQTGAGKTWT 106 (350)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhCCCceeEEeecCCCCCCCEE
Confidence 4566778877 55678999999976
No 343
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=39.58 E-value=20 Score=37.79 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=19.8
Q ss_pred HHHHHHHcCCC--EEEEccCCCchhHH
Q 003910 254 QALPIILSGRD--IIGIAKTGSGKTAA 278 (787)
Q Consensus 254 ~ai~~il~grd--vii~a~TGsGKTla 278 (787)
..+..++.|.| ++..++||||||.+
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyT 97 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYT 97 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEE
Confidence 35677788987 55679999999976
No 344
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=39.56 E-value=14 Score=35.12 Aligned_cols=19 Identities=26% Similarity=0.265 Sum_probs=16.0
Q ss_pred HcCCCEEEEccCCCchhHH
Q 003910 260 LSGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 260 l~grdvii~a~TGsGKTla 278 (787)
..|.-+++++++|||||..
T Consensus 4 ~~g~~i~l~G~~GsGKSTl 22 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTV 22 (207)
T ss_dssp CCCCEEEEECSTTSCHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3567789999999999975
No 345
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=39.50 E-value=43 Score=33.72 Aligned_cols=52 Identities=15% Similarity=0.160 Sum_probs=29.0
Q ss_pred ccCCccccCCCHHHHHHHHHCCCCCCcHHH-HHHHHHHH--cCCCEEEEccCCCchhHH
Q 003910 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQ-CQALPIIL--SGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 223 pi~sf~~~~l~~~l~~~l~~~g~~~ptp~Q-~~ai~~il--~grdvii~a~TGsGKTla 278 (787)
|-.+|+++...+.+...+...-.. +. ...+..+- -.+.+++++|+|+|||..
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~----~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl 89 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF----LKNPSRFHEMGARIPKGVLLVGPPGVGKTHL 89 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH----HHCHHHHHHTTCCCCCEEEEECCTTSSHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH----HHCHHHHHHcCCCCCCeEEEECCCcChHHHH
Confidence 456788887666666555432100 00 01111110 124599999999999964
No 346
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=39.47 E-value=15 Score=36.86 Aligned_cols=15 Identities=33% Similarity=0.120 Sum_probs=12.9
Q ss_pred CEEEEccCCCchhHH
Q 003910 264 DIIGIAKTGSGKTAA 278 (787)
Q Consensus 264 dvii~a~TGsGKTla 278 (787)
-++++++||||||..
T Consensus 3 li~I~G~~GSGKSTl 17 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDM 17 (253)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 368899999999975
No 347
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=39.45 E-value=15 Score=38.31 Aligned_cols=15 Identities=47% Similarity=0.476 Sum_probs=13.0
Q ss_pred CEEEEccCCCchhHH
Q 003910 264 DIIGIAKTGSGKTAA 278 (787)
Q Consensus 264 dvii~a~TGsGKTla 278 (787)
-+++++|||+|||..
T Consensus 12 ~i~i~GptgsGKt~l 26 (316)
T 3foz_A 12 AIFLMGPTASGKTAL 26 (316)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCccCHHHH
Confidence 478899999999975
No 348
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=39.44 E-value=91 Score=31.43 Aligned_cols=95 Identities=18% Similarity=0.234 Sum_probs=59.1
Q ss_pred cCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHH---HHHHh
Q 003910 270 KTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ---FKELK 346 (787)
Q Consensus 270 ~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~---~~~l~ 346 (787)
...++|..+ ++-++..+.. .+.++||.+.++..+..+...+.+. .++.+..++|+.+..+. +....
T Consensus 92 ~~~s~K~~~-L~~ll~~~~~-------~~~kvlIFs~~~~~~~~l~~~L~~~---~g~~~~~l~G~~~~~~R~~~i~~F~ 160 (271)
T 1z5z_A 92 VRRSGKMIR-TMEIIEEALD-------EGDKIAIFTQFVDMGKIIRNIIEKE---LNTEVPFLYGELSKKERDDIISKFQ 160 (271)
T ss_dssp STTCHHHHH-HHHHHHHHHH-------TTCCEEEEESCHHHHHHHHHHHHHH---HCSCCCEECTTSCHHHHHHHHHHHH
T ss_pred cccCHHHHH-HHHHHHHHHh-------CCCeEEEEeccHHHHHHHHHHHHHh---cCCcEEEEECCCCHHHHHHHHHHhc
Confidence 345788764 5555655532 3567899999998888777766653 27888889998875433 23333
Q ss_pred cC--Cc-EEEeCHHHHHHHHHhccccccceeEEEEech
Q 003910 347 AG--CE-IVIATPGRLIDMLKMKALTMSRVTYLVLDEA 381 (787)
Q Consensus 347 ~~--~d-IIV~Tp~~L~~~l~~~~~~l~~i~~lViDEa 381 (787)
.+ +. ++++|- .....+++..+++||+=+.
T Consensus 161 ~~~~~~v~L~st~------~~g~Glnl~~a~~VI~~d~ 192 (271)
T 1z5z_A 161 NNPSVKFIVLSVK------AGGFGINLTSANRVIHFDR 192 (271)
T ss_dssp HCTTCCEEEEECC------TTCCCCCCTTCSEEEECSC
T ss_pred CCCCCCEEEEehh------hhcCCcCcccCCEEEEECC
Confidence 33 44 566662 1123556777777765433
No 349
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=39.33 E-value=13 Score=35.08 Aligned_cols=18 Identities=33% Similarity=0.551 Sum_probs=15.5
Q ss_pred cCCCEEEEccCCCchhHH
Q 003910 261 SGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla 278 (787)
.+..+++++++|||||.+
T Consensus 9 ~~~~I~l~G~~GsGKSTv 26 (184)
T 1y63_A 9 KGINILITGTPGTGKTSM 26 (184)
T ss_dssp SSCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 356799999999999975
No 350
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=39.22 E-value=14 Score=36.09 Aligned_cols=18 Identities=22% Similarity=0.434 Sum_probs=14.8
Q ss_pred cCCCEEEEccCCCchhHH
Q 003910 261 SGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla 278 (787)
.++-++++++||+|||..
T Consensus 33 ~g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSET 50 (205)
T ss_dssp TTEEEEEECCCTTTTHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 346689999999999864
No 351
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=39.18 E-value=19 Score=38.30 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=18.9
Q ss_pred HHHHHHcCCC--EEEEccCCCchhHH
Q 003910 255 ALPIILSGRD--IIGIAKTGSGKTAA 278 (787)
Q Consensus 255 ai~~il~grd--vii~a~TGsGKTla 278 (787)
.+..++.|.| ++..++||||||.+
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyT 120 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYT 120 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceE
Confidence 4667788887 45578999999976
No 352
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=39.17 E-value=19 Score=38.51 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=18.7
Q ss_pred HHHHHHcCCC--EEEEccCCCchhHH
Q 003910 255 ALPIILSGRD--IIGIAKTGSGKTAA 278 (787)
Q Consensus 255 ai~~il~grd--vii~a~TGsGKTla 278 (787)
.+..++.|.+ ++..++||||||.+
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyT 118 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYT 118 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEe
Confidence 4566778887 45578999999976
No 353
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=39.11 E-value=18 Score=38.41 Aligned_cols=24 Identities=33% Similarity=0.510 Sum_probs=19.0
Q ss_pred HHHHHHcCCC--EEEEccCCCchhHH
Q 003910 255 ALPIILSGRD--IIGIAKTGSGKTAA 278 (787)
Q Consensus 255 ai~~il~grd--vii~a~TGsGKTla 278 (787)
.|..++.|.| ++..++||||||.+
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyT 109 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYT 109 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceE
Confidence 4666788987 45678999999976
No 354
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=38.97 E-value=17 Score=38.30 Aligned_cols=20 Identities=45% Similarity=0.611 Sum_probs=17.3
Q ss_pred HHcCCCEEEEccCCCchhHH
Q 003910 259 ILSGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 259 il~grdvii~a~TGsGKTla 278 (787)
+..|..++++++||||||..
T Consensus 168 i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHH
T ss_pred ccCCCEEEEECCCCCCHHHH
Confidence 44788999999999999973
No 355
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=38.96 E-value=1.1e+02 Score=32.98 Aligned_cols=31 Identities=19% Similarity=0.275 Sum_probs=23.0
Q ss_pred CcHHHHHHHHHHH---cCCCEEEEccCCCchhHH
Q 003910 248 PTSIQCQALPIIL---SGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 248 ptp~Q~~ai~~il---~grdvii~a~TGsGKTla 278 (787)
|-..=..+|..++ .|+.+.+.+++|+|||..
T Consensus 157 ~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtL 190 (422)
T 3ice_A 157 TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTML 190 (422)
T ss_dssp TTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHH
T ss_pred cccccceeeeeeeeecCCcEEEEecCCCCChhHH
Confidence 3344445566554 688999999999999975
No 356
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=38.76 E-value=24 Score=31.69 Aligned_cols=37 Identities=22% Similarity=0.305 Sum_probs=32.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHHcCC-ceeeccCCCC
Q 003910 469 DDGDVLVFASKKTTVDEIESQLAQKGF-KAAALHGDKD 505 (787)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~g~-~v~~lhg~~~ 505 (787)
...+++|||.+-..+...+..|...|+ .+..|.|++.
T Consensus 81 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 118 (137)
T 1qxn_A 81 PEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMD 118 (137)
T ss_dssp TTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHH
Confidence 456899999999999999999999999 5889999874
No 357
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=38.65 E-value=14 Score=38.65 Aligned_cols=16 Identities=25% Similarity=0.293 Sum_probs=13.4
Q ss_pred CCEEEEccCCCchhHH
Q 003910 263 RDIIGIAKTGSGKTAA 278 (787)
Q Consensus 263 rdvii~a~TGsGKTla 278 (787)
+-++|++|||+|||..
T Consensus 4 ~~i~i~GptgsGKt~l 19 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKT 19 (322)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred cEEEEECCCcCCHHHH
Confidence 3478899999999975
No 358
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A {Vibrio fischeri} PDB: 3pvz_A*
Probab=38.49 E-value=1.9e+02 Score=30.64 Aligned_cols=90 Identities=10% Similarity=0.095 Sum_probs=55.3
Q ss_pred HHHHHHHHcCCCEEEEccCCC-chhHHHHHHHHHHHhcCcccccCCCC-EEEEEcCcHHHHHHHHHHHHHHhhhcCceEE
Q 003910 253 CQALPIILSGRDIIGIAKTGS-GKTAAFVLPMIVHIMDQPELQKEEGP-IGVICAPTRELAHQIYLETKKFAKSHGIRVS 330 (787)
Q Consensus 253 ~~ai~~il~grdvii~a~TGs-GKTla~llp~l~~l~~~~~~~~~~~p-~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~ 330 (787)
...+...+.++.++|.+.||. |.-++ ..++. .++ .++++.-...-..++..++.......+..+.
T Consensus 26 ~~~~~~~~~~k~vLVTGatG~IG~~l~------~~L~~-------~g~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~v~ 92 (399)
T 3nzo_A 26 EKELQSVVSQSRFLVLGGAGSIGQAVT------KEIFK-------RNPQKLHVVDISENNMVELVRDIRSSFGYINGDFQ 92 (399)
T ss_dssp HHHHHHHHHTCEEEEETTTSHHHHHHH------HHHHT-------TCCSEEEEECSCHHHHHHHHHHHHHHTCCCSSEEE
T ss_pred HHHHHHHhCCCEEEEEcCChHHHHHHH------HHHHH-------CCCCEEEEEECCcchHHHHHHHHHHhcCCCCCcEE
Confidence 345566788999999999885 66554 33322 243 5666666555555665666554432345677
Q ss_pred EEECCCChHHHHHHHh--cCCcEEEeC
Q 003910 331 AVYGGMSKLDQFKELK--AGCEIVIAT 355 (787)
Q Consensus 331 ~~~gg~~~~~~~~~l~--~~~dIIV~T 355 (787)
.+.+..........+. .++|+||-.
T Consensus 93 ~~~~Dl~d~~~~~~~~~~~~~D~Vih~ 119 (399)
T 3nzo_A 93 TFALDIGSIEYDAFIKADGQYDYVLNL 119 (399)
T ss_dssp EECCCTTSHHHHHHHHHCCCCSEEEEC
T ss_pred EEEEeCCCHHHHHHHHHhCCCCEEEEC
Confidence 7777776665555444 468888754
No 359
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=38.44 E-value=19 Score=38.34 Aligned_cols=24 Identities=29% Similarity=0.551 Sum_probs=18.5
Q ss_pred HHHHHHcCCC--EEEEccCCCchhHH
Q 003910 255 ALPIILSGRD--IIGIAKTGSGKTAA 278 (787)
Q Consensus 255 ai~~il~grd--vii~a~TGsGKTla 278 (787)
.|..++.|.+ ++..++||||||.+
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyT 97 (355)
T 1goj_A 72 TVDDILNGYNGTVFAYGQTGAGKSYT 97 (355)
T ss_dssp HHHHHTTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhCCCcceEEEECCCCCCcceE
Confidence 3556778877 55678999999976
No 360
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=38.25 E-value=17 Score=38.70 Aligned_cols=24 Identities=33% Similarity=0.546 Sum_probs=18.8
Q ss_pred HHHHHHcCCC--EEEEccCCCchhHH
Q 003910 255 ALPIILSGRD--IIGIAKTGSGKTAA 278 (787)
Q Consensus 255 ai~~il~grd--vii~a~TGsGKTla 278 (787)
.+..++.|.+ ++..++||||||.+
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyT 105 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFT 105 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceE
Confidence 4666778876 55678999999976
No 361
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=38.18 E-value=25 Score=38.63 Aligned_cols=68 Identities=16% Similarity=0.154 Sum_probs=45.2
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhc-CCcEEEeCHHHHHHHHHhccccccceeEE
Q 003910 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYL 376 (787)
Q Consensus 298 ~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~-~~dIIV~Tp~~L~~~l~~~~~~l~~i~~l 376 (787)
...+||.||++.-|.++++.+++. ++.+..+++... ...+..+.. ..+||||| +.+. ..+++.. .+|
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~-~~~~~~f~~g~~~vLVaT-----~v~~-~GiDip~-~~V 255 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTF-DTEYPKTKLTDWDFVVTT-----DISE-MGANFRA-GRV 255 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTH-HHHGGGGGSSCCSEEEEC-----GGGG-SSCCCCC-SEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHH-HHHHHhhccCCceEEEEC-----CHHH-hCcCCCC-CEE
Confidence 346899999999999888777664 788888877543 222333333 47999999 3333 3445655 555
Q ss_pred E
Q 003910 377 V 377 (787)
Q Consensus 377 V 377 (787)
|
T Consensus 256 I 256 (451)
T 2jlq_A 256 I 256 (451)
T ss_dssp E
T ss_pred E
Confidence 5
No 362
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=38.15 E-value=20 Score=38.49 Aligned_cols=24 Identities=29% Similarity=0.584 Sum_probs=18.7
Q ss_pred HHHHHHcCCC--EEEEccCCCchhHH
Q 003910 255 ALPIILSGRD--IIGIAKTGSGKTAA 278 (787)
Q Consensus 255 ai~~il~grd--vii~a~TGsGKTla 278 (787)
.+..++.|.+ ++..++||||||.+
T Consensus 92 lv~~~l~G~n~tifAYGqTGSGKTyT 117 (373)
T 2wbe_C 92 LIEEVLNGYNCTVFAYGQTGTGKTHT 117 (373)
T ss_dssp HHHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhCCceEEEEeecCCCCCccee
Confidence 4566778877 55678999999976
No 363
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=37.95 E-value=21 Score=35.86 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=18.2
Q ss_pred HHHHcCCCEEEEccCCCchhHH
Q 003910 257 PIILSGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 257 ~~il~grdvii~a~TGsGKTla 278 (787)
...+.++.+++++++|+|||..
T Consensus 43 ~~~l~g~~i~l~G~~GsGKSTl 64 (250)
T 3nwj_A 43 KPYLNGRSMYLVGMMGSGKTTV 64 (250)
T ss_dssp HHHHTTCCEEEECSTTSCHHHH
T ss_pred hhhcCCCEEEEECCCCCCHHHH
Confidence 3344589999999999999975
No 364
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=37.79 E-value=20 Score=38.22 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=18.8
Q ss_pred HHHHHHcCCC--EEEEccCCCchhHH
Q 003910 255 ALPIILSGRD--IIGIAKTGSGKTAA 278 (787)
Q Consensus 255 ai~~il~grd--vii~a~TGsGKTla 278 (787)
.+..++.|.+ ++..++||||||.+
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyT 122 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHT 122 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceee
Confidence 4566778887 56678999999976
No 365
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=37.77 E-value=19 Score=32.69 Aligned_cols=37 Identities=16% Similarity=0.346 Sum_probs=32.1
Q ss_pred CCCCEEEEeccc--ccHHHHHHHHHHcCCceeeccCCCC
Q 003910 469 DDGDVLVFASKK--TTVDEIESQLAQKGFKAAALHGDKD 505 (787)
Q Consensus 469 ~~~kvLVF~~s~--~~a~~l~~~L~~~g~~v~~lhg~~~ 505 (787)
...++||||.+- ..+..++..|...|+++..|.|++.
T Consensus 71 ~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 71 KEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp TTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 456899999987 5889999999999999999999864
No 366
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=37.64 E-value=6.4 Score=40.30 Aligned_cols=53 Identities=15% Similarity=0.255 Sum_probs=25.1
Q ss_pred ccCCccccCCCHHHHHHHHHCCCCCCcHHHH-HHHHHH--HcCCCEEEEccCCCchhHH
Q 003910 223 PVKTFEDCGFSTQLMHAISKQGYEKPTSIQC-QALPII--LSGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 223 pi~sf~~~~l~~~l~~~l~~~g~~~ptp~Q~-~ai~~i--l~grdvii~a~TGsGKTla 278 (787)
|-.+|++++-.+.+.+.|...= ..|+.. .++..+ .-.+.+++.+|+|+|||+.
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i---~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAI---LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLL 60 (274)
T ss_dssp -------CCHHHHHHHHHHHHH---THHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHH---HHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHH
Confidence 4467888876666666665320 111111 111111 1124599999999999974
No 367
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=37.50 E-value=16 Score=34.73 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=18.3
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHH
Q 003910 261 SGRDIIGIAKTGSGKTAAFVLPMIVHI 287 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla~llp~l~~l 287 (787)
.|.-+.+++|+|+|||.. +-+|..+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl--~~~L~~~ 30 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSL--VRALVKA 30 (205)
T ss_dssp CCCEEEEECCTTSCHHHH--HHHHHHH
T ss_pred CCcEEEEECcCCCCHHHH--HHHHHhh
Confidence 567788999999999974 3344443
No 368
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=37.47 E-value=16 Score=39.05 Aligned_cols=19 Identities=32% Similarity=0.282 Sum_probs=15.9
Q ss_pred HcCCCEEEEccCCCchhHH
Q 003910 260 LSGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 260 l~grdvii~a~TGsGKTla 278 (787)
..+..++++++||||||..
T Consensus 134 ~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp SSSEEEEEECSSSSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3566789999999999974
No 369
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=37.25 E-value=14 Score=34.72 Aligned_cols=18 Identities=28% Similarity=0.525 Sum_probs=15.1
Q ss_pred cCCCEEEEccCCCchhHH
Q 003910 261 SGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla 278 (787)
.+..+++++++|||||.+
T Consensus 3 ~g~~I~l~G~~GsGKST~ 20 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQ 20 (186)
T ss_dssp CEEEEEEECCTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 455689999999999975
No 370
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=36.76 E-value=16 Score=34.43 Aligned_cols=18 Identities=28% Similarity=0.446 Sum_probs=15.4
Q ss_pred cCCCEEEEccCCCchhHH
Q 003910 261 SGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla 278 (787)
.|.-+++++++|+|||..
T Consensus 8 ~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp TTEEEEEEECTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 566789999999999974
No 371
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=36.74 E-value=64 Score=38.60 Aligned_cols=53 Identities=13% Similarity=0.131 Sum_probs=42.2
Q ss_pred CCCEEEEecccccHHHHHHHHHH----cCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEeh
Q 003910 470 DGDVLVFASKKTTVDEIESQLAQ----KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD 528 (787)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~----~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~ 528 (787)
..+++|.+++..-|.+.++.+.. .++.+.++.|+++..+|..+. .++|+|+|.
T Consensus 120 G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTp 176 (997)
T 2ipc_A 120 GKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTN 176 (997)
T ss_dssp CSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEH
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECc
Confidence 45899999999888777766554 589999999999987766554 379999994
No 372
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=36.57 E-value=37 Score=38.02 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=19.5
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHH
Q 003910 261 SGRDIIGIAKTGSGKTAAFVLPMIVHI 287 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla~llp~l~~l 287 (787)
.+.++++++.||||||.+ +-.++..+
T Consensus 166 ~~pHlLIaG~TGSGKSt~-L~~li~sL 191 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVG-VNAMILSM 191 (512)
T ss_dssp GSCSEEEECCTTSSHHHH-HHHHHHHH
T ss_pred cCceEEEECCCCCCHHHH-HHHHHHHH
Confidence 457999999999999975 44444443
No 373
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=36.39 E-value=20 Score=30.48 Aligned_cols=37 Identities=19% Similarity=0.399 Sum_probs=31.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHHcCCc-eeeccCCCC
Q 003910 469 DDGDVLVFASKKTTVDEIESQLAQKGFK-AAALHGDKD 505 (787)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~g~~-v~~lhg~~~ 505 (787)
...+++|||.+-..+..++..|...|+. +..|.|++.
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 3568999999988899999999999995 888888764
No 374
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=36.38 E-value=17 Score=38.52 Aligned_cols=24 Identities=38% Similarity=0.516 Sum_probs=19.2
Q ss_pred HHHHHHcCCC--EEEEccCCCchhHH
Q 003910 255 ALPIILSGRD--IIGIAKTGSGKTAA 278 (787)
Q Consensus 255 ai~~il~grd--vii~a~TGsGKTla 278 (787)
.+..++.|.| ++..++||||||.+
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyT 102 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYT 102 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceE
Confidence 5667788887 45678999999976
No 375
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=36.33 E-value=21 Score=38.44 Aligned_cols=24 Identities=33% Similarity=0.518 Sum_probs=18.9
Q ss_pred HHHHHHcCCC--EEEEccCCCchhHH
Q 003910 255 ALPIILSGRD--IIGIAKTGSGKTAA 278 (787)
Q Consensus 255 ai~~il~grd--vii~a~TGsGKTla 278 (787)
.|..++.|.+ ++..++||||||.+
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyT 151 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHT 151 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHH
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeE
Confidence 4666788876 56678999999976
No 376
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=36.21 E-value=23 Score=38.45 Aligned_cols=25 Identities=36% Similarity=0.519 Sum_probs=20.1
Q ss_pred HHHHHHHcCCC--EEEEccCCCchhHH
Q 003910 254 QALPIILSGRD--IIGIAKTGSGKTAA 278 (787)
Q Consensus 254 ~ai~~il~grd--vii~a~TGsGKTla 278 (787)
..|..++.|.+ ++..++||||||.+
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyT 155 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYT 155 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeE
Confidence 35777889987 45578999999976
No 377
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=36.01 E-value=9.7 Score=48.13 Aligned_cols=42 Identities=21% Similarity=0.323 Sum_probs=31.3
Q ss_pred ccceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEec
Q 003910 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSA 411 (787)
Q Consensus 370 l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SA 411 (787)
+++..++|+||+=.-+|..-+..+...+..+..++-+|+.+.
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaH 611 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAH 611 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECS
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcc
Confidence 567789999999988887777778877777655555555543
No 378
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=35.97 E-value=22 Score=39.00 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=18.8
Q ss_pred HHHHHHcCCC--EEEEccCCCchhHH
Q 003910 255 ALPIILSGRD--IIGIAKTGSGKTAA 278 (787)
Q Consensus 255 ai~~il~grd--vii~a~TGsGKTla 278 (787)
.|..++.|.| ++..++||||||.+
T Consensus 128 lv~~~l~GyN~tIfAYGQTGSGKTyT 153 (443)
T 2owm_A 128 FLDHNFEGYHTCIFAYGQTGSGKSYT 153 (443)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHhhcCCceEEEEeCCCCCCCCEE
Confidence 4566788887 55678999999976
No 379
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=35.94 E-value=18 Score=38.42 Aligned_cols=24 Identities=38% Similarity=0.515 Sum_probs=18.8
Q ss_pred HHHHHHcCCC--EEEEccCCCchhHH
Q 003910 255 ALPIILSGRD--IIGIAKTGSGKTAA 278 (787)
Q Consensus 255 ai~~il~grd--vii~a~TGsGKTla 278 (787)
.+..++.|.| ++..++||||||.+
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyT 101 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFT 101 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEe
Confidence 4566778877 55678999999976
No 380
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=35.65 E-value=18 Score=34.98 Aligned_cols=19 Identities=16% Similarity=0.394 Sum_probs=16.2
Q ss_pred HcCCCEEEEccCCCchhHH
Q 003910 260 LSGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 260 l~grdvii~a~TGsGKTla 278 (787)
+.++-+++++|+|+|||..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp CSCCEEEEECCTTSSHHHH
T ss_pred CCCCEEEEECcCCCCHHHH
Confidence 3677899999999999974
No 381
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=35.64 E-value=45 Score=38.29 Aligned_cols=68 Identities=16% Similarity=0.167 Sum_probs=46.2
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhc-CCcEEEeCHHHHHHHHHhccccccceeEE
Q 003910 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKA-GCEIVIATPGRLIDMLKMKALTMSRVTYL 376 (787)
Q Consensus 298 ~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~-~~dIIV~Tp~~L~~~l~~~~~~l~~i~~l 376 (787)
..++||.|+|+.-|..+++.+++. ++++..++|. .....+..+.. ..+|||||. .+.. .+++. +.+|
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~-~R~~~l~~F~~g~~~VLVaTd-----v~~r-GiDi~-v~~V 422 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRK-TFDTEYPKTKLTDWDFVVTTD-----ISEM-GANFR-AGRV 422 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTT-THHHHTTHHHHSCCSEEEECG-----GGGT-TCCCC-CSEE
T ss_pred CCCEEEEECChhHHHHHHHHHHHc----CCcEEEEChH-HHHHHHHhhcCCCcEEEEECc-----HHHc-CcccC-ceEE
Confidence 446899999999999888888765 7888888874 33333444443 478999993 3333 34453 6665
Q ss_pred E
Q 003910 377 V 377 (787)
Q Consensus 377 V 377 (787)
|
T Consensus 423 I 423 (618)
T 2whx_A 423 I 423 (618)
T ss_dssp E
T ss_pred E
Confidence 4
No 382
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=35.64 E-value=26 Score=36.53 Aligned_cols=15 Identities=27% Similarity=0.215 Sum_probs=12.8
Q ss_pred CEEEEccCCCchhHH
Q 003910 264 DIIGIAKTGSGKTAA 278 (787)
Q Consensus 264 dvii~a~TGsGKTla 278 (787)
-+++.++.|+|||..
T Consensus 6 v~~i~G~~GaGKTTl 20 (318)
T 1nij_A 6 VTLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEEESSSSSCHHH
T ss_pred EEEEEecCCCCHHHH
Confidence 368899999999974
No 383
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=35.59 E-value=16 Score=33.80 Aligned_cols=15 Identities=40% Similarity=0.463 Sum_probs=13.1
Q ss_pred CEEEEccCCCchhHH
Q 003910 264 DIIGIAKTGSGKTAA 278 (787)
Q Consensus 264 dvii~a~TGsGKTla 278 (787)
-+++++++|||||..
T Consensus 4 ~I~i~G~~GsGKST~ 18 (181)
T 1ly1_A 4 IILTIGCPGSGKSTW 18 (181)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEecCCCCCHHHH
Confidence 478899999999975
No 384
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=35.41 E-value=20 Score=38.45 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=19.2
Q ss_pred HHHHHHcCCC--EEEEccCCCchhHH
Q 003910 255 ALPIILSGRD--IIGIAKTGSGKTAA 278 (787)
Q Consensus 255 ai~~il~grd--vii~a~TGsGKTla 278 (787)
.+..++.|.+ ++..++||||||.+
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyT 96 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFT 96 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEe
Confidence 5677788987 45578999999976
No 385
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=35.27 E-value=16 Score=33.48 Aligned_cols=15 Identities=20% Similarity=-0.106 Sum_probs=13.1
Q ss_pred CEEEEccCCCchhHH
Q 003910 264 DIIGIAKTGSGKTAA 278 (787)
Q Consensus 264 dvii~a~TGsGKTla 278 (787)
-++++++.|+|||.+
T Consensus 3 ~i~l~G~~GsGKsT~ 17 (173)
T 3kb2_A 3 LIILEGPDCCFKSTV 17 (173)
T ss_dssp EEEEECSSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999975
No 386
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=35.25 E-value=30 Score=34.25 Aligned_cols=17 Identities=35% Similarity=0.380 Sum_probs=14.3
Q ss_pred CEEEEccCCCchhHHHH
Q 003910 264 DIIGIAKTGSGKTAAFV 280 (787)
Q Consensus 264 dvii~a~TGsGKTla~l 280 (787)
++++.++.|.|||...+
T Consensus 8 ~I~~~~kgGvGKTt~a~ 24 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAML 24 (228)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 58899999999998633
No 387
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=35.22 E-value=59 Score=27.72 Aligned_cols=51 Identities=10% Similarity=0.127 Sum_probs=35.7
Q ss_pred cCCcCCCCCEEEEecc------cccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHH
Q 003910 464 LPGMIDDGDVLVFASK------KTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQ 514 (787)
Q Consensus 464 L~~~~~~~kvLVF~~s------~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~ 514 (787)
+.......+|+||..+ --.|..+..+|...++.+..++=......+..+.+
T Consensus 11 v~~~i~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~ 67 (109)
T 3ipz_A 11 LEKLVNSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKE 67 (109)
T ss_dssp HHHHHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHH
T ss_pred HHHHHccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHH
Confidence 3334456799999874 77899999999999988776654444554444444
No 388
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=35.15 E-value=41 Score=46.04 Aligned_cols=54 Identities=9% Similarity=0.257 Sum_probs=34.4
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHH----HHHHcCCCEEEEccCCCchhHHHHHHHHHHHh
Q 003910 232 FSTQLMHAISKQGYEKPTSIQCQAL----PIILSGRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (787)
Q Consensus 232 l~~~l~~~l~~~g~~~ptp~Q~~ai----~~il~grdvii~a~TGsGKTla~llp~l~~l~ 288 (787)
|...+.+.+.+.++. |+|.+..=+ ..+...+.+++++|||+|||.++ -+|...+
T Consensus 873 l~~ai~~~~~~~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~--~~L~~al 930 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSW--EVYLEAI 930 (3245)
T ss_dssp HHHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHcCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHH--HHHHHHH
Confidence 344566666677764 666554333 33345567999999999999874 3444444
No 389
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=35.08 E-value=62 Score=34.20 Aligned_cols=17 Identities=47% Similarity=0.567 Sum_probs=15.0
Q ss_pred CCCEEEEccCCCchhHH
Q 003910 262 GRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 262 grdvii~a~TGsGKTla 278 (787)
..++++++|+|+|||..
T Consensus 72 ~~~ill~Gp~GtGKT~l 88 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLM 88 (376)
T ss_dssp CCCEEEECCTTSSHHHH
T ss_pred CCCEEEECCCCCCHHHH
Confidence 46899999999999975
No 390
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=35.02 E-value=23 Score=34.48 Aligned_cols=27 Identities=11% Similarity=0.159 Sum_probs=18.9
Q ss_pred HHcCCCEEEEccCCCchhHHHHHHHHHHH
Q 003910 259 ILSGRDIIGIAKTGSGKTAAFVLPMIVHI 287 (787)
Q Consensus 259 il~grdvii~a~TGsGKTla~llp~l~~l 287 (787)
+..|+-+.+++|+|+|||.. +-+|..+
T Consensus 20 i~~G~~~~lvGpsGsGKSTL--l~~L~g~ 46 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTL--IKKLLNE 46 (218)
T ss_dssp --CCCCEEEECSTTSSHHHH--HHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHH--HHHHHhh
Confidence 34678899999999999964 3344443
No 391
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=34.93 E-value=30 Score=36.73 Aligned_cols=38 Identities=24% Similarity=0.240 Sum_probs=24.5
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcC
Q 003910 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAP 306 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~P 306 (787)
.++-+++.+++|+|||.. ++.++..+... +..++++..
T Consensus 62 ~G~ii~I~G~pGsGKTtL-al~la~~~~~~-------g~~vlyid~ 99 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTL-TLQVIAAAQRE-------GKTCAFIDA 99 (356)
T ss_dssp TTSEEEEECSTTSSHHHH-HHHHHHHHHHT-------TCCEEEEES
T ss_pred CCeEEEEECCCCCCHHHH-HHHHHHHHHHC-------CCeEEEEeC
Confidence 346789999999999975 44444444322 334666654
No 392
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=34.80 E-value=80 Score=36.64 Aligned_cols=76 Identities=17% Similarity=0.190 Sum_probs=51.1
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHHhhh--------------------------------cCceEEEEECCCChHHHHHHH
Q 003910 298 GPIGVICAPTRELAHQIYLETKKFAKS--------------------------------HGIRVSAVYGGMSKLDQFKEL 345 (787)
Q Consensus 298 ~p~vLIl~PtreLa~Qi~~~~~~~~~~--------------------------------~~i~v~~~~gg~~~~~~~~~l 345 (787)
+..+||.||++.-+..++..+...... ....+..++++.+..++..-.
T Consensus 252 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~ 331 (715)
T 2va8_A 252 NGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIE 331 (715)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHH
Confidence 456899999999999998888764321 123478888988876543322
Q ss_pred ---h-cCCcEEEeCHHHHHHHHHhccccccceeEEEEe
Q 003910 346 ---K-AGCEIVIATPGRLIDMLKMKALTMSRVTYLVLD 379 (787)
Q Consensus 346 ---~-~~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViD 379 (787)
. ....|||||. .+ ...+++..+.+||.+
T Consensus 332 ~~f~~g~~~vlvaT~-----~l-~~Gidip~~~~VI~~ 363 (715)
T 2va8_A 332 EGFRQRKIKVIVATP-----TL-AAGVNLPARTVIIGD 363 (715)
T ss_dssp HHHHTTCSCEEEECG-----GG-GGSSCCCBSEEEECC
T ss_pred HHHHcCCCeEEEECh-----HH-hcccCCCceEEEEeC
Confidence 2 2479999993 33 235567788776643
No 393
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=34.59 E-value=20 Score=37.61 Aligned_cols=15 Identities=33% Similarity=0.392 Sum_probs=13.3
Q ss_pred CEEEEccCCCchhHH
Q 003910 264 DIIGIAKTGSGKTAA 278 (787)
Q Consensus 264 dvii~a~TGsGKTla 278 (787)
.++++++||+|||..
T Consensus 7 ~i~i~GptGsGKTtl 21 (323)
T 3crm_A 7 AIFLMGPTAAGKTDL 21 (323)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 588999999999975
No 394
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=34.39 E-value=1.9e+02 Score=30.13 Aligned_cols=15 Identities=27% Similarity=0.268 Sum_probs=13.2
Q ss_pred CEEEEccCCCchhHH
Q 003910 264 DIIGIAKTGSGKTAA 278 (787)
Q Consensus 264 dvii~a~TGsGKTla 278 (787)
.+++++.+|+|||..
T Consensus 81 ~I~i~G~~G~GKSTl 95 (355)
T 3p32_A 81 RVGITGVPGVGKSTA 95 (355)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 588899999999975
No 395
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=34.35 E-value=2.9e+02 Score=25.79 Aligned_cols=127 Identities=11% Similarity=-0.004 Sum_probs=46.1
Q ss_pred HcCCCEEEEccCCCchhHHHHHHHHHHHhcCcc-----cccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCc-eEEEEE
Q 003910 260 LSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPE-----LQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGI-RVSAVY 333 (787)
Q Consensus 260 l~grdvii~a~TGsGKTla~llp~l~~l~~~~~-----~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i-~v~~~~ 333 (787)
+.|-.+-+....|-|=|+.+.+|+......... .....+.++|||-........+...+..+ ++ .+..+
T Consensus 18 ~hgG~i~v~S~~g~Gs~f~~~lP~~~~~~~~~~~~~~~~~~~~~~~ILiVdDd~~~~~~l~~~L~~~----g~~~v~~a- 92 (206)
T 3mm4_A 18 SHMASTDSESETRVKSVRTGRKPIGNPEDEQETSKPSDDEFLRGKRVLVVDDNFISRKVATGKLKKM----GVSEVEQC- 92 (206)
T ss_dssp -------------------------------------CTTTTTTCEEEEECSCHHHHHHHHHHHHHT----TCSEEEEE-
T ss_pred ccCCceeeeccCCCcceeeeccCCCCCcccccccCCCcccccCCCEEEEEeCCHHHHHHHHHHHHHc----CCCeeeee-
Confidence 445566777888899998888886443221110 01123457888877766665554444443 44 33222
Q ss_pred CCCChHHHHHHHhcCCcEEEeCHHHHHHHHHhc--------cccccceeEEEEechhhhhcCCChHHHHHHhhh---cCC
Q 003910 334 GGMSKLDQFKELKAGCEIVIATPGRLIDMLKMK--------ALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQ---IRP 402 (787)
Q Consensus 334 gg~~~~~~~~~l~~~~dIIV~Tp~~L~~~l~~~--------~~~l~~i~~lViDEah~m~~~~f~~~i~~il~~---~~~ 402 (787)
.+....+..+... ...-..+++||+|= .|.+++-...+..+... ..+
T Consensus 93 --------------------~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~--~lp~~~G~el~~~lr~~~~~~~~ 150 (206)
T 3mm4_A 93 --------------------DSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDC--QMPEMDGYEATREIRKVEKSYGV 150 (206)
T ss_dssp --------------------SSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEES--CCSSSCHHHHHHHHHHHHHTTTC
T ss_pred --------------------CCHHHHHHHHHhhcccccccccccCCCCCEEEEcC--CCCCCCHHHHHHHHHhhhhhcCC
Confidence 2333333433321 11123578899883 23333322233333332 246
Q ss_pred CceEEEEeccC
Q 003910 403 DRQTLLFSATM 413 (787)
Q Consensus 403 ~~q~ll~SAT~ 413 (787)
...+|++|+..
T Consensus 151 ~~piI~ls~~~ 161 (206)
T 3mm4_A 151 RTPIIAVSGHD 161 (206)
T ss_dssp CCCEEEEESSC
T ss_pred CCcEEEEECCC
Confidence 77899999976
No 396
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=34.25 E-value=32 Score=33.19 Aligned_cols=16 Identities=31% Similarity=0.306 Sum_probs=13.6
Q ss_pred CEEEEccCCCchhHHH
Q 003910 264 DIIGIAKTGSGKTAAF 279 (787)
Q Consensus 264 dvii~a~TGsGKTla~ 279 (787)
-.+++++.|||||+..
T Consensus 7 i~l~tG~pGsGKT~~a 22 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKM 22 (199)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 4689999999999854
No 397
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=34.15 E-value=59 Score=27.97 Aligned_cols=48 Identities=8% Similarity=0.142 Sum_probs=34.3
Q ss_pred cCCCCCEEEEec------ccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHH
Q 003910 467 MIDDGDVLVFAS------KKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQ 514 (787)
Q Consensus 467 ~~~~~kvLVF~~------s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~ 514 (787)
.+...+|+||.. .--.|..+..+|...++.+..+.=..+...+..+.+
T Consensus 12 ~i~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~ 65 (111)
T 3zyw_A 12 LTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKA 65 (111)
T ss_dssp HHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHH
T ss_pred HHhcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHH
Confidence 345679999994 566789999999999988776654445555554443
No 398
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=34.06 E-value=25 Score=33.19 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=16.7
Q ss_pred CCEEEEccCCCchhHHHHHHHHHHH
Q 003910 263 RDIIGIAKTGSGKTAAFVLPMIVHI 287 (787)
Q Consensus 263 rdvii~a~TGsGKTla~llp~l~~l 287 (787)
+-+.+++|+|+|||.. +-+|..+
T Consensus 2 ~ii~l~GpsGaGKsTl--~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL--LKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHH--HHHHHHH
T ss_pred CEEEEECCCCCCHHHH--HHHHHhh
Confidence 4578999999999974 4444444
No 399
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=34.06 E-value=19 Score=38.87 Aligned_cols=23 Identities=35% Similarity=0.668 Sum_probs=18.0
Q ss_pred HHHHHcCCC--EEEEccCCCchhHH
Q 003910 256 LPIILSGRD--IIGIAKTGSGKTAA 278 (787)
Q Consensus 256 i~~il~grd--vii~a~TGsGKTla 278 (787)
|..++.|.+ ++..++||||||.+
T Consensus 91 v~~~l~G~N~tifAYGqTGSGKTyT 115 (388)
T 3bfn_A 91 LRHLLEGQNASVLAYGPTGAGKTHT 115 (388)
T ss_dssp HHHHTTTCCEEEEEESCTTSSHHHH
T ss_pred HHHhhcCceeeEeeecCCCCCCCeE
Confidence 456778877 55578999999976
No 400
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=34.04 E-value=19 Score=34.45 Aligned_cols=16 Identities=31% Similarity=0.522 Sum_probs=14.1
Q ss_pred CCEEEEccCCCchhHH
Q 003910 263 RDIIGIAKTGSGKTAA 278 (787)
Q Consensus 263 rdvii~a~TGsGKTla 278 (787)
|-+|++||.|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5689999999999974
No 401
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=33.99 E-value=24 Score=32.86 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=16.7
Q ss_pred CEEEEccCCCchhHHHHHHHHHHHh
Q 003910 264 DIIGIAKTGSGKTAAFVLPMIVHIM 288 (787)
Q Consensus 264 dvii~a~TGsGKTla~llp~l~~l~ 288 (787)
-.++++++|+|||.. +-++..++
T Consensus 28 ~~~i~G~NGsGKStl--l~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNI--GDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHH--HHHHHHHT
T ss_pred cEEEECCCCCCHHHH--HHHHHHHH
Confidence 467899999999974 44455543
No 402
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=33.96 E-value=1.2e+02 Score=25.03 Aligned_cols=67 Identities=25% Similarity=0.335 Sum_probs=49.2
Q ss_pred HhcCCcCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEeh
Q 003910 462 EKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD 528 (787)
Q Consensus 462 ~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~ 528 (787)
..|.+...-.++||..+.+.-...+.+.+.+.||.+..+-.+.+..+.++.-+...+.-+.|--.|+
T Consensus 43 kklaeeknfekiliisndkqllkemlelisklgykvflllqdqdeneleefkrkiesqgyevrkvtd 109 (134)
T 2lci_A 43 KKLAEEKNFEKILIISNDKQLLKEMLELISKLGYKVFLLLQDQDENELEEFKRKIESQGYEVRKVTD 109 (134)
T ss_dssp HHHHHCCSCCCEEEEESCHHHHHHHHHHHHHHTCCEEEEEECSCHHHHHHHHHHHHTTTCEEEEECC
T ss_pred HHHHhhcCcceEEEEcCcHHHHHHHHHHHHHhCceeEEEeecCchhHHHHHHHHHHhCCeeeeecCC
Confidence 3333333456999999999999999999999999999999888888766655555554455544443
No 403
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=33.83 E-value=86 Score=35.38 Aligned_cols=80 Identities=13% Similarity=0.128 Sum_probs=51.4
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHHHhhh----cCceEEEEECCCCh-H-HHHHHHhcC-Cc---EEEeCHHHHHHHHHhc
Q 003910 297 EGPIGVICAPTRELAHQIYLETKKFAKS----HGIRVSAVYGGMSK-L-DQFKELKAG-CE---IVIATPGRLIDMLKMK 366 (787)
Q Consensus 297 ~~p~vLIl~PtreLa~Qi~~~~~~~~~~----~~i~v~~~~gg~~~-~-~~~~~l~~~-~d---IIV~Tp~~L~~~l~~~ 366 (787)
.+.++||.|+++.-|..+++.+.+.... .+-.+..++|.... . ..+..+..+ .+ |+||| +++ ..
T Consensus 438 ~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt-----~~l-~~ 511 (590)
T 3h1t_A 438 RFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTS-----QLL-TT 511 (590)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEES-----STT-TT
T ss_pred CCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhCCCCCCCEEEEEC-----Chh-hc
Confidence 3578999999999999999999887542 12235556665543 2 223334432 23 77777 222 34
Q ss_pred cccccceeEEEEechh
Q 003910 367 ALTMSRVTYLVLDEAD 382 (787)
Q Consensus 367 ~~~l~~i~~lViDEah 382 (787)
.+++..+.+||++..-
T Consensus 512 GiDip~v~~Vi~~~~~ 527 (590)
T 3h1t_A 512 GVDAPTCKNVVLARVV 527 (590)
T ss_dssp TCCCTTEEEEEEESCC
T ss_pred CccchheeEEEEEecC
Confidence 5678899999986654
No 404
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=33.60 E-value=53 Score=39.18 Aligned_cols=69 Identities=7% Similarity=0.044 Sum_probs=51.0
Q ss_pred CCCEEEEecccccHHHHHHHHHH----cCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEeh-hh-----hc-------
Q 003910 470 DGDVLVFASKKTTVDEIESQLAQ----KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-VA-----AR------- 532 (787)
Q Consensus 470 ~~kvLVF~~s~~~a~~l~~~L~~----~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-v~-----~r------- 532 (787)
..+++|.+++..-|.+.++.+.. .|+.+.++.|+++..+|.... .++|+++|. .+ ..
T Consensus 152 g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTpgrlgfDyLrD~m~~~~~ 225 (922)
T 1nkt_A 152 GNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTNNEFGFDYLRDNMAHSLD 225 (922)
T ss_dssp TSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSGG
T ss_pred CCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchHhhHHHHHhhhhccHh
Confidence 45899999999888777766644 589999999999987665544 278999994 22 22
Q ss_pred cCCCCCccEEEE
Q 003910 533 GLDIKSIKSVVN 544 (787)
Q Consensus 533 GlDip~v~~VI~ 544 (787)
.+.+..+.++|.
T Consensus 226 ~l~lr~l~~lIV 237 (922)
T 1nkt_A 226 DLVQRGHHYAIV 237 (922)
T ss_dssp GCCCCCCCEEEE
T ss_pred hhccCCCCEEEE
Confidence 356667777774
No 405
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=33.26 E-value=3.4e+02 Score=27.73 Aligned_cols=74 Identities=12% Similarity=0.177 Sum_probs=39.3
Q ss_pred HHHHHHHHhccccccceeEEEEechhh-hhcCCChHHHHHHhhhcCCCceEEEEeccCcHH--HHHHHHHHhCCCeEEE
Q 003910 357 GRLIDMLKMKALTMSRVTYLVLDEADR-MFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRK--VEKLAREILSDPVRVT 432 (787)
Q Consensus 357 ~~L~~~l~~~~~~l~~i~~lViDEah~-m~~~~f~~~i~~il~~~~~~~q~ll~SAT~~~~--v~~l~~~~l~~p~~i~ 432 (787)
..+.+.+....+ +....+|||||+|. |... ....+...+...++...+|+.+.++.+. ...+...+......+.
T Consensus 62 ~~l~~~~~~~pl-f~~~kvvii~~~~~kl~~~-~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~ 138 (343)
T 1jr3_D 62 NAIFSLCQAMSL-FASRQTLLLLLPENGPNAA-INEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVT 138 (343)
T ss_dssp HHHHHHHHHHHH-CCSCEEEEEECCSSCCCTT-HHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEE
T ss_pred HHHHHHhcCcCC-ccCCeEEEEECCCCCCChH-HHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEE
Confidence 344444433332 45678999999998 6432 2345666666655555555555444321 1234444444443333
No 406
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=32.86 E-value=24 Score=33.66 Aligned_cols=18 Identities=33% Similarity=0.575 Sum_probs=15.4
Q ss_pred cCCCEEEEccCCCchhHH
Q 003910 261 SGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla 278 (787)
.+.-+++++++|+|||..
T Consensus 28 ~g~~i~l~G~~GsGKSTl 45 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTI 45 (200)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 456799999999999975
No 407
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=32.73 E-value=72 Score=26.73 Aligned_cols=56 Identities=18% Similarity=0.182 Sum_probs=37.6
Q ss_pred CCCCEEEEec------ccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEE
Q 003910 469 DDGDVLVFAS------KKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVL 524 (787)
Q Consensus 469 ~~~kvLVF~~------s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VL 524 (787)
...+++||.. .--.|..+..+|...++.+..+.=+..+..+......+....+.+|
T Consensus 15 ~~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v 76 (105)
T 2yan_A 15 NKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWPTYPQL 76 (105)
T ss_dssp TSSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEE
T ss_pred ccCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCCCCCCeE
Confidence 3457999984 5567899999999998887777655566555555554433334444
No 408
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=32.56 E-value=28 Score=31.70 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=16.3
Q ss_pred CEEEEccCCCchhHHHHHHHHHHHh
Q 003910 264 DIIGIAKTGSGKTAAFVLPMIVHIM 288 (787)
Q Consensus 264 dvii~a~TGsGKTla~llp~l~~l~ 288 (787)
-.+|++++|+|||.. +-++..++
T Consensus 25 ~~~I~G~NGsGKSti--l~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL--LDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHH
T ss_pred eEEEECCCCCCHHHH--HHHHHHHH
Confidence 368899999999975 44444443
No 409
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=32.51 E-value=27 Score=33.79 Aligned_cols=40 Identities=10% Similarity=0.198 Sum_probs=22.4
Q ss_pred eeEEEEechhhhhcCC---Ch-HHHHHHhhhc-CCCceEEEEecc
Q 003910 373 VTYLVLDEADRMFDLG---FE-PQIRSIVGQI-RPDRQTLLFSAT 412 (787)
Q Consensus 373 i~~lViDEah~m~~~~---f~-~~i~~il~~~-~~~~q~ll~SAT 412 (787)
-.+|||||||.++... .+ ..+...+... ....++|+++-.
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQG 132 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESC
T ss_pred ceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCC
Confidence 5689999999985321 11 1222222222 234577777776
No 410
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=32.36 E-value=27 Score=35.62 Aligned_cols=16 Identities=31% Similarity=0.418 Sum_probs=14.1
Q ss_pred CCEEEEccCCCchhHH
Q 003910 263 RDIIGIAKTGSGKTAA 278 (787)
Q Consensus 263 rdvii~a~TGsGKTla 278 (787)
..+++.+|+|+|||..
T Consensus 48 ~~~ll~G~~GtGKt~l 63 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTEL 63 (311)
T ss_dssp EEEEEESCSSSSHHHH
T ss_pred eEEEEECCCCcCHHHH
Confidence 3699999999999975
No 411
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=32.35 E-value=28 Score=28.11 Aligned_cols=36 Identities=14% Similarity=0.304 Sum_probs=28.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHHcCCc-eeeccCCCC
Q 003910 469 DDGDVLVFASKKTTVDEIESQLAQKGFK-AAALHGDKD 505 (787)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~g~~-v~~lhg~~~ 505 (787)
...+++|||.+-..+...+..|...|+. +..+ |++.
T Consensus 40 ~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 40 KNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp TTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 4568999999988899999999999986 5555 6653
No 412
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=32.34 E-value=78 Score=38.41 Aligned_cols=77 Identities=12% Similarity=0.166 Sum_probs=55.5
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHH---HHHHhcC---CcEEEeCHHHHHHHHHhccccc
Q 003910 297 EGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQ---FKELKAG---CEIVIATPGRLIDMLKMKALTM 370 (787)
Q Consensus 297 ~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~---~~~l~~~---~dIIV~Tp~~L~~~l~~~~~~l 370 (787)
.+.++||.|+++..+..+...+... .++++..++|+.+..+. +..+..+ ++|+|||. . -...+++
T Consensus 502 ~~~k~iVF~~~~~~~~~l~~~L~~~---~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~-----v-~~~GlDl 572 (968)
T 3dmq_A 502 RSQKVLVICAKAATALQLEQVLRER---EGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSE-----I-GSEGRNF 572 (968)
T ss_dssp SSSCCCEECSSTHHHHHHHHHHHTT---TCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSC-----C-TTCSSCC
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHH---cCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecc-----h-hhcCCCc
Confidence 3567899999999988877766642 38899999999775433 3344444 89999992 2 2345678
Q ss_pred cceeEEEEechh
Q 003910 371 SRVTYLVLDEAD 382 (787)
Q Consensus 371 ~~i~~lViDEah 382 (787)
..+.+||+-+..
T Consensus 573 ~~~~~VI~~d~p 584 (968)
T 3dmq_A 573 QFASHMVMFDLP 584 (968)
T ss_dssp TTCCEEECSSCC
T ss_pred ccCcEEEEecCC
Confidence 889999876665
No 413
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=32.09 E-value=25 Score=33.78 Aligned_cols=29 Identities=14% Similarity=0.197 Sum_probs=19.6
Q ss_pred HHHcCCCEEEEccCCCchhHHHHHHHHHHHh
Q 003910 258 IILSGRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (787)
Q Consensus 258 ~il~grdvii~a~TGsGKTla~llp~l~~l~ 288 (787)
.+..|+-+.+++|+|+|||.. +-++.-++
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL--l~~l~gl~ 44 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV--VRCLRERI 44 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH--HHHHHHHS
T ss_pred CCCCCCEEEEECCCCCCHHHH--HHHHHhhC
Confidence 466788899999999999974 44444443
No 414
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=31.92 E-value=17 Score=34.07 Aligned_cols=17 Identities=18% Similarity=0.261 Sum_probs=14.3
Q ss_pred CCCEEEEccCCCchhHH
Q 003910 262 GRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 262 grdvii~a~TGsGKTla 278 (787)
+.-+++++++|||||.+
T Consensus 3 ~~~I~l~G~~GsGKsT~ 19 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQ 19 (196)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 34588999999999976
No 415
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=31.75 E-value=24 Score=37.33 Aligned_cols=15 Identities=40% Similarity=0.399 Sum_probs=13.2
Q ss_pred CEEEEccCCCchhHH
Q 003910 264 DIIGIAKTGSGKTAA 278 (787)
Q Consensus 264 dvii~a~TGsGKTla 278 (787)
-++|+++||||||..
T Consensus 9 lI~I~GptgSGKTtl 23 (340)
T 3d3q_A 9 LIVIVGPTASGKTEL 23 (340)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred eEEEECCCcCcHHHH
Confidence 578999999999975
No 416
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=31.68 E-value=62 Score=36.74 Aligned_cols=42 Identities=21% Similarity=0.411 Sum_probs=29.9
Q ss_pred ccceeEEEEechhhhhcCCChHHHHHHhhhcCCCceEEEEec
Q 003910 370 MSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSA 411 (787)
Q Consensus 370 l~~i~~lViDEah~m~~~~f~~~i~~il~~~~~~~q~ll~SA 411 (787)
+.+..++|+||.-.-+|......+...+..+...+-+|+.|.
T Consensus 496 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH 537 (582)
T 3b5x_A 496 LRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAH 537 (582)
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEec
Confidence 456789999999988887777777777777655443444443
No 417
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=31.65 E-value=15 Score=34.88 Aligned_cols=18 Identities=33% Similarity=0.246 Sum_probs=15.3
Q ss_pred cCCCEEEEccCCCchhHH
Q 003910 261 SGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla 278 (787)
.+.-++++++.|||||.+
T Consensus 3 ~~~~I~l~G~~GsGKsT~ 20 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQ 20 (204)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 356789999999999976
No 418
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=31.44 E-value=58 Score=35.98 Aligned_cols=20 Identities=30% Similarity=0.355 Sum_probs=17.4
Q ss_pred HHcCCCEEEEccCCCchhHH
Q 003910 259 ILSGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 259 il~grdvii~a~TGsGKTla 278 (787)
+..|+.+++.++.|.|||..
T Consensus 148 i~kGq~~~i~G~sGvGKTtL 167 (473)
T 1sky_E 148 YIKGGKIGLFGGAGVGKTVL 167 (473)
T ss_dssp EETTCEEEEECCSSSCHHHH
T ss_pred hccCCEEEEECCCCCCccHH
Confidence 34788999999999999975
No 419
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=31.41 E-value=23 Score=37.57 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=15.0
Q ss_pred CCCEEEEccCCCchhHH
Q 003910 262 GRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 262 grdvii~a~TGsGKTla 278 (787)
.+.+++++|+|+|||..
T Consensus 117 ~~~vLl~GppGtGKT~l 133 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLI 133 (357)
T ss_dssp CSEEEEESSTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 46799999999999975
No 420
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=31.39 E-value=27 Score=32.82 Aligned_cols=20 Identities=25% Similarity=0.308 Sum_probs=16.4
Q ss_pred HHcCCCEEEEccCCCchhHH
Q 003910 259 ILSGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 259 il~grdvii~a~TGsGKTla 278 (787)
+..+.-+++++++|||||.+
T Consensus 6 m~~~~~I~l~G~~GsGKsT~ 25 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQ 25 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHH
T ss_pred CcCCCEEEEECCCCCCHHHH
Confidence 33556789999999999975
No 421
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=31.36 E-value=18 Score=33.73 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=14.7
Q ss_pred cCCCEEEEccCCCchhHH
Q 003910 261 SGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla 278 (787)
.|.-+.+++++|||||..
T Consensus 8 ~gei~~l~G~nGsGKSTl 25 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTF 25 (171)
T ss_dssp SSEEEEEECCTTSCHHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 345678999999999975
No 422
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=31.33 E-value=30 Score=36.89 Aligned_cols=21 Identities=33% Similarity=0.400 Sum_probs=16.1
Q ss_pred HHH-cCCC--EEEEccCCCchhHH
Q 003910 258 IIL-SGRD--IIGIAKTGSGKTAA 278 (787)
Q Consensus 258 ~il-~grd--vii~a~TGsGKTla 278 (787)
.++ .|.+ ++..++||||||.+
T Consensus 78 ~~~~~G~n~tifAYGqTGSGKTyT 101 (360)
T 1ry6_A 78 DLYENGCVCSCFAYGQTGSGKTYT 101 (360)
T ss_dssp HHHHHCCEEEEEEECCTTSSHHHH
T ss_pred hhccCCceeEEEeeCCCCCCCCEE
Confidence 344 4776 57789999999976
No 423
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=31.29 E-value=23 Score=38.02 Aligned_cols=24 Identities=38% Similarity=0.488 Sum_probs=18.8
Q ss_pred HHHHHHcCCC--EEEEccCCCchhHH
Q 003910 255 ALPIILSGRD--IIGIAKTGSGKTAA 278 (787)
Q Consensus 255 ai~~il~grd--vii~a~TGsGKTla 278 (787)
.|..++.|.+ ++..++||||||.+
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyT 132 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFT 132 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceE
Confidence 4666778877 55578999999976
No 424
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=31.27 E-value=40 Score=34.88 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=18.4
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHhc
Q 003910 262 GRDIIGIAKTGSGKTAAFVLPMIVHIMD 289 (787)
Q Consensus 262 grdvii~a~TGsGKTla~llp~l~~l~~ 289 (787)
+.-+.+++++|+|||.. +.+|..++.
T Consensus 102 g~vi~lvG~nGsGKTTl--l~~Lagll~ 127 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTT--IAKLGRYYQ 127 (304)
T ss_dssp SSEEEEECSTTSSHHHH--HHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHH--HHHHHHHHH
Confidence 45688899999999974 444554443
No 425
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=30.94 E-value=27 Score=34.27 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=16.0
Q ss_pred HHHcCCCEEEEccCCCchhHH
Q 003910 258 IILSGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 258 ~il~grdvii~a~TGsGKTla 278 (787)
.+..|+-+++++|.|+|||..
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHH
Confidence 355677899999999999974
No 426
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=30.78 E-value=23 Score=32.72 Aligned_cols=17 Identities=29% Similarity=0.370 Sum_probs=14.5
Q ss_pred CCCEEEEccCCCchhHH
Q 003910 262 GRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 262 grdvii~a~TGsGKTla 278 (787)
+..++++++.|+|||..
T Consensus 8 g~~i~l~G~~GsGKSTl 24 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAV 24 (175)
T ss_dssp SEEEEEECSTTSCHHHH
T ss_pred CcEEEEEcCCCCCHHHH
Confidence 45688999999999975
No 427
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=30.75 E-value=21 Score=33.51 Aligned_cols=17 Identities=29% Similarity=0.253 Sum_probs=14.2
Q ss_pred CCCEEEEccCCCchhHH
Q 003910 262 GRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 262 grdvii~a~TGsGKTla 278 (787)
+.-+++++++|||||..
T Consensus 5 ~~~I~l~G~~GsGKST~ 21 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTL 21 (193)
T ss_dssp CEEEEEEESTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34588999999999975
No 428
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=30.37 E-value=24 Score=34.59 Aligned_cols=18 Identities=22% Similarity=0.407 Sum_probs=15.2
Q ss_pred cCCCEEEEccCCCchhHH
Q 003910 261 SGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla 278 (787)
....+++.+++|||||.+
T Consensus 15 ~~~~I~l~G~~GsGKsT~ 32 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQ 32 (233)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 346799999999999975
No 429
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=30.35 E-value=27 Score=33.60 Aligned_cols=29 Identities=21% Similarity=0.067 Sum_probs=20.6
Q ss_pred cHHHHHHHHHHHcCCCEEEEccCCCchhHH
Q 003910 249 TSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 249 tp~Q~~ai~~il~grdvii~a~TGsGKTla 278 (787)
++.+... ..+..+.-+++++++|+|||..
T Consensus 13 ~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~ 41 (211)
T 1m7g_A 13 TRSERTE-LRNQRGLTIWLTGLSASGKSTL 41 (211)
T ss_dssp CHHHHHH-HHTSSCEEEEEECSTTSSHHHH
T ss_pred CHHHhhc-ccCCCCCEEEEECCCCCCHHHH
Confidence 4455544 2344567788999999999975
No 430
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=30.21 E-value=17 Score=34.64 Aligned_cols=18 Identities=33% Similarity=0.287 Sum_probs=15.0
Q ss_pred cCCCEEEEccCCCchhHH
Q 003910 261 SGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla 278 (787)
.+.-++++++.|||||..
T Consensus 3 ~~~~I~i~G~~GsGKsT~ 20 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQ 20 (213)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCeEEEEEcCCCCCHHHH
Confidence 455688999999999975
No 431
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=30.19 E-value=39 Score=30.05 Aligned_cols=37 Identities=16% Similarity=0.329 Sum_probs=32.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHHcCCc-eeeccCCCC
Q 003910 469 DDGDVLVFASKKTTVDEIESQLAQKGFK-AAALHGDKD 505 (787)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~g~~-v~~lhg~~~ 505 (787)
.+.+++|||.+=..+...+..|...||. +..|.|++.
T Consensus 73 ~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 73 ENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 3568999999988899999999999995 888999884
No 432
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=30.05 E-value=1.1e+02 Score=35.58 Aligned_cols=76 Identities=20% Similarity=0.205 Sum_probs=50.1
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHHhhh-----------------------------cCceEEEEECCCChHHHHHH---H
Q 003910 298 GPIGVICAPTRELAHQIYLETKKFAKS-----------------------------HGIRVSAVYGGMSKLDQFKE---L 345 (787)
Q Consensus 298 ~p~vLIl~PtreLa~Qi~~~~~~~~~~-----------------------------~~i~v~~~~gg~~~~~~~~~---l 345 (787)
+..+||.||++.-+..++..+.+.+.. ....+..++++.+..++... +
T Consensus 237 ~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f 316 (720)
T 2zj8_A 237 KKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENF 316 (720)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 456899999999999998888765321 11247888888877654322 2
Q ss_pred hc-CCcEEEeCHHHHHHHHHhccccccceeEEEEec
Q 003910 346 KA-GCEIVIATPGRLIDMLKMKALTMSRVTYLVLDE 380 (787)
Q Consensus 346 ~~-~~dIIV~Tp~~L~~~l~~~~~~l~~i~~lViDE 380 (787)
.. ...|||||. .+ ...+++..+.+ ||+.
T Consensus 317 ~~g~~~vlvaT~-----~l-~~Gvdip~~~~-VI~~ 345 (720)
T 2zj8_A 317 RKGIIKAVVATP-----TL-SAGINTPAFRV-IIRD 345 (720)
T ss_dssp HTTSSCEEEECS-----TT-GGGCCCCBSEE-EECC
T ss_pred HCCCCeEEEECc-----Hh-hccCCCCceEE-EEcC
Confidence 22 478999993 22 23456777776 4443
No 433
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=29.93 E-value=35 Score=35.47 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=15.3
Q ss_pred cCCCEEEEccCCCchhHH
Q 003910 261 SGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla 278 (787)
...++++.+++|+|||..
T Consensus 44 ~~~~vLl~G~~GtGKT~l 61 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTA 61 (350)
T ss_dssp GGCCEEEECCGGGCTTHH
T ss_pred CCceEEEECCCCccHHHH
Confidence 346799999999999975
No 434
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=29.67 E-value=24 Score=33.26 Aligned_cols=18 Identities=33% Similarity=0.351 Sum_probs=15.4
Q ss_pred cCCCEEEEccCCCchhHH
Q 003910 261 SGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla 278 (787)
.+.-+++++++|||||.+
T Consensus 11 ~~~~I~l~G~~GsGKsT~ 28 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQ 28 (199)
T ss_dssp HSCEEEEEECTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456789999999999975
No 435
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=29.67 E-value=41 Score=35.89 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=19.2
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHh
Q 003910 262 GRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (787)
Q Consensus 262 grdvii~a~TGsGKTla~llp~l~~l~ 288 (787)
|+-+++.+++|+|||.. ++.++..+.
T Consensus 74 G~li~I~G~pGsGKTtl-al~la~~~~ 99 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTL-ALAIVAQAQ 99 (366)
T ss_dssp TSEEEEEESTTSSHHHH-HHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHH-HHHHHHHHH
Confidence 46788999999999974 555555543
No 436
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=29.53 E-value=29 Score=32.58 Aligned_cols=16 Identities=25% Similarity=0.324 Sum_probs=13.3
Q ss_pred CCEEEEccCCCchhHH
Q 003910 263 RDIIGIAKTGSGKTAA 278 (787)
Q Consensus 263 rdvii~a~TGsGKTla 278 (787)
.-+++++++|+|||..
T Consensus 3 ~ii~l~G~~GaGKSTl 18 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTT 18 (189)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCcHHHH
Confidence 3468899999999975
No 437
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=29.51 E-value=29 Score=33.05 Aligned_cols=16 Identities=31% Similarity=0.572 Sum_probs=14.2
Q ss_pred CCEEEEccCCCchhHH
Q 003910 263 RDIIGIAKTGSGKTAA 278 (787)
Q Consensus 263 rdvii~a~TGsGKTla 278 (787)
+-++++++.|||||..
T Consensus 19 ~~I~l~G~~GsGKSTl 34 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSV 34 (202)
T ss_dssp SCEEEECSTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4699999999999975
No 438
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=29.49 E-value=26 Score=31.21 Aligned_cols=37 Identities=14% Similarity=0.230 Sum_probs=32.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHHcCCc-eeeccCCCC
Q 003910 469 DDGDVLVFASKKTTVDEIESQLAQKGFK-AAALHGDKD 505 (787)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~g~~-v~~lhg~~~ 505 (787)
...+++|||.+-..+..++..|...|+. +..|.|++.
T Consensus 85 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 122 (139)
T 2hhg_A 85 EDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFG 122 (139)
T ss_dssp SSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHH
Confidence 3568999999988888999999999995 889999864
No 439
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=29.45 E-value=44 Score=31.37 Aligned_cols=23 Identities=17% Similarity=0.046 Sum_probs=15.8
Q ss_pred CEEEEccCCCchhHHHHHHHHHHH
Q 003910 264 DIIGIAKTGSGKTAAFVLPMIVHI 287 (787)
Q Consensus 264 dvii~a~TGsGKTla~llp~l~~l 287 (787)
-+.++++.|||||.. +..++..+
T Consensus 6 ~i~i~G~sGsGKTTl-~~~L~~~l 28 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL-MEKWVAAA 28 (169)
T ss_dssp EEEEECCTTSSHHHH-HHHHHHHH
T ss_pred EEEEECCCCCCHHHH-HHHHHHhh
Confidence 467889999999974 33344444
No 440
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=29.38 E-value=57 Score=36.97 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=19.9
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHHh
Q 003910 262 GRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (787)
Q Consensus 262 grdvii~a~TGsGKTla~llp~l~~l~ 288 (787)
..++++.+.||||||.+ +..++..++
T Consensus 214 ~pHlLIaG~TGSGKS~~-L~tlI~sLl 239 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVG-VNAMLLSIL 239 (574)
T ss_dssp SCCEEEECCTTSSHHHH-HHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHH-HHHHHHHHH
Confidence 46899999999999985 555555554
No 441
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=29.28 E-value=29 Score=31.86 Aligned_cols=16 Identities=31% Similarity=0.501 Sum_probs=14.5
Q ss_pred CCEEEEccCCCchhHH
Q 003910 263 RDIIGIAKTGSGKTAA 278 (787)
Q Consensus 263 rdvii~a~TGsGKTla 278 (787)
+++++.+..|||||.+
T Consensus 8 ~~i~l~G~~GsGKSTv 23 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSL 23 (168)
T ss_dssp CEEEEESCTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 5799999999999976
No 442
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=28.97 E-value=27 Score=37.88 Aligned_cols=15 Identities=33% Similarity=0.390 Sum_probs=12.8
Q ss_pred CEEEEccCCCchhHH
Q 003910 264 DIIGIAKTGSGKTAA 278 (787)
Q Consensus 264 dvii~a~TGsGKTla 278 (787)
-++|++|||+|||..
T Consensus 4 ~i~i~GptgsGKttl 18 (409)
T 3eph_A 4 VIVIAGTTGVGKSQL 18 (409)
T ss_dssp EEEEEECSSSSHHHH
T ss_pred EEEEECcchhhHHHH
Confidence 367899999999965
No 443
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=28.96 E-value=36 Score=35.20 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=18.4
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHHh
Q 003910 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla~llp~l~~l~ 288 (787)
.+.-+.+++++|+|||.. +.+|..++
T Consensus 99 ~g~vi~lvG~nGsGKTTl--l~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTS--LGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHH--HHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHH--HHHHHHHH
Confidence 455688999999999975 44444443
No 444
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=28.94 E-value=43 Score=28.52 Aligned_cols=37 Identities=16% Similarity=0.258 Sum_probs=31.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCC
Q 003910 469 DDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKD 505 (787)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~ 505 (787)
...+++|||.+-..+..++..|...|+....|.|++.
T Consensus 55 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 55 KDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp SSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 4568999999988899999999999986678888864
No 445
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=28.93 E-value=33 Score=31.72 Aligned_cols=16 Identities=38% Similarity=0.561 Sum_probs=14.0
Q ss_pred CCEEEEccCCCchhHH
Q 003910 263 RDIIGIAKTGSGKTAA 278 (787)
Q Consensus 263 rdvii~a~TGsGKTla 278 (787)
+.+++++++|||||..
T Consensus 5 ~~i~i~G~~GsGKsTl 20 (175)
T 1via_A 5 KNIVFIGFMGSGKSTL 20 (175)
T ss_dssp CCEEEECCTTSCHHHH
T ss_pred CEEEEEcCCCCCHHHH
Confidence 3689999999999975
No 446
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=28.90 E-value=34 Score=37.64 Aligned_cols=53 Identities=15% Similarity=0.175 Sum_probs=37.8
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhc-CCcEEEeC
Q 003910 298 GPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKA-GCEIVIAT 355 (787)
Q Consensus 298 ~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~-~~dIIV~T 355 (787)
+.++||.||++.-|..+++.+++. ++.+..+++.. ....+..+.. ...|||||
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~----g~~v~~lh~~~-R~~~~~~f~~g~~~iLVaT 243 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRA----GKKVIQLNRKS-YDTEYPKCKNGDWDFVITT 243 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEEESTTC-CCCCGGGSSSCCCSEEEES
T ss_pred CCCEEEEeCChHHHHHHHHHHHhc----CCcEEecCHHH-HHHHHhhccCCCceEEEEC
Confidence 456899999999999888887775 78888887742 2222222222 37899999
No 447
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=28.84 E-value=59 Score=33.65 Aligned_cols=47 Identities=11% Similarity=0.229 Sum_probs=40.1
Q ss_pred CCEEEEecc-----------cccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhc
Q 003910 471 GDVLVFASK-----------KTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKS 518 (787)
Q Consensus 471 ~kvLVF~~s-----------~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~ 518 (787)
+-+|||+|. ..+++.|.+.|+..||.|. ++-+++..+-.++++.|..
T Consensus 61 r~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~f~~ 118 (302)
T 3e4c_A 61 RLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVD-VKKNLTASDMTTELEAFAH 118 (302)
T ss_dssp CEEEEEECCSCSSSCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHT
T ss_pred cEEEEEECcCCCCCCCCCCcHHHHHHHHHHHHHCCCEEE-EeeCCCHHHHHHHHHHHHh
Confidence 358999987 4578999999999999975 5568999999999999964
No 448
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=28.79 E-value=33 Score=39.98 Aligned_cols=69 Identities=16% Similarity=0.287 Sum_probs=49.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHH---cCCceeeccCCCCHHHHHHHHHHhhcCCccEEEEeh-----hhhccCC-CCCc
Q 003910 469 DDGDVLVFASKKTTVDEIESQLAQ---KGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATD-----VAARGLD-IKSI 539 (787)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~---~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~-----v~~rGlD-ip~v 539 (787)
..+++||.+|++.-+..+++.++. .++.+..++|+....++ ..+..+|+|+|. .+..+.. +..+
T Consensus 67 ~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-------~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~ 139 (702)
T 2p6r_A 67 KGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDE-------HLGDCDIIVTTSEKADSLIRNRASWIKAV 139 (702)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSS-------CSTTCSEEEEEHHHHHHHHHTTCSGGGGC
T ss_pred hCCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchh-------hccCCCEEEECHHHHHHHHHcChhHHhhc
Confidence 357999999999999998888843 37889999998765432 124788999994 2233333 5667
Q ss_pred cEEEE
Q 003910 540 KSVVN 544 (787)
Q Consensus 540 ~~VI~ 544 (787)
.+||.
T Consensus 140 ~~vIi 144 (702)
T 2p6r_A 140 SCLVV 144 (702)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 77775
No 449
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=28.68 E-value=30 Score=33.10 Aligned_cols=18 Identities=28% Similarity=0.130 Sum_probs=15.0
Q ss_pred cCCCEEEEccCCCchhHH
Q 003910 261 SGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla 278 (787)
.|.-+++.+++|+|||..
T Consensus 19 ~G~~~~i~G~~GsGKTtl 36 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTL 36 (220)
T ss_dssp TTSEEEEECSTTSSHHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 345689999999999975
No 450
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=28.65 E-value=31 Score=36.10 Aligned_cols=16 Identities=25% Similarity=0.355 Sum_probs=14.4
Q ss_pred CCEEEEccCCCchhHH
Q 003910 263 RDIIGIAKTGSGKTAA 278 (787)
Q Consensus 263 rdvii~a~TGsGKTla 278 (787)
..+++.+|+|+|||..
T Consensus 52 ~~~ll~Gp~G~GKTTL 67 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTL 67 (334)
T ss_dssp CCEEEESSTTSSHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 6799999999999974
No 451
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=28.46 E-value=23 Score=21.71 Aligned_cols=12 Identities=58% Similarity=1.212 Sum_probs=7.9
Q ss_pred CccccCCCCCCC
Q 003910 775 RPRERRRPSGWD 786 (787)
Q Consensus 775 ~~~~~~~~~~~~ 786 (787)
|.|-|+||=+||
T Consensus 4 rrrprkrplewd 15 (28)
T 3ukw_C 4 RRRPRKRPLEWD 15 (28)
T ss_dssp ---CCCCCCCCC
T ss_pred ccccccCCcccc
Confidence 456688999998
No 452
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=28.42 E-value=74 Score=35.18 Aligned_cols=16 Identities=31% Similarity=0.549 Sum_probs=14.3
Q ss_pred CCEEEEccCCCchhHH
Q 003910 263 RDIIGIAKTGSGKTAA 278 (787)
Q Consensus 263 rdvii~a~TGsGKTla 278 (787)
+.+++++|+|+|||+.
T Consensus 50 ~gvLL~GppGtGKT~L 65 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLL 65 (476)
T ss_dssp SEEEEECCTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 5699999999999975
No 453
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=28.12 E-value=88 Score=38.08 Aligned_cols=65 Identities=15% Similarity=0.139 Sum_probs=47.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHHc--CCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehh-----hhcc-CCCCCcc
Q 003910 469 DDGDVLVFASKKTTVDEIESQLAQK--GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDV-----AARG-LDIKSIK 540 (787)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~--g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v-----~~rG-lDip~v~ 540 (787)
...++||.+|++.-+..+++.|... ++.+..++|+.+ .++..+|||+|.- +.++ ..+..+.
T Consensus 81 ~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l~G~~~-----------~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~ 149 (997)
T 4a4z_A 81 NMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQ-----------INPDANCLIMTTEILRSMLYRGADLIRDVE 149 (997)
T ss_dssp TTCEEEEEESCGGGHHHHHHHHHTTC--CCEEEECSSCE-----------ECTTSSEEEEEHHHHHHHHHHTCSGGGGEE
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEeCCCc-----------cCCCCCEEEECHHHHHHHHHhCchhhcCCC
Confidence 3568999999999999999999885 678999999875 2356789999842 2233 3455666
Q ss_pred EEEE
Q 003910 541 SVVN 544 (787)
Q Consensus 541 ~VI~ 544 (787)
+||.
T Consensus 150 lvVi 153 (997)
T 4a4z_A 150 FVIF 153 (997)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6664
No 454
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=28.09 E-value=1.1e+02 Score=33.40 Aligned_cols=67 Identities=16% Similarity=0.075 Sum_probs=44.3
Q ss_pred CCEEEEecccccHHHHHHHHHHc-----CCceeeccCCCCHHHHHHHHHHhhcCCccEEEEehhhh-------ccCCCCC
Q 003910 471 GDVLVFASKKTTVDEIESQLAQK-----GFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAA-------RGLDIKS 538 (787)
Q Consensus 471 ~kvLVF~~s~~~a~~l~~~L~~~-----g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLVaT~v~~-------rGlDip~ 538 (787)
.++||.++++.-+..+++.+... ++.+..+.++.... .......+|+|+|.-.- ..+++..
T Consensus 163 ~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 235 (479)
T 3fmp_B 163 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE-------RGQKISEQIVIGTPGTVLDWCSKLKFIDPKK 235 (479)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCC-------TTCCCCCSEEEECHHHHHHHHTTSCCCCGGG
T ss_pred CcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccc-------ccccCCCCEEEECchHHHHHHHhcCCcCccc
Confidence 38999999999999887777653 45555555544321 11133468999994221 3577788
Q ss_pred ccEEEE
Q 003910 539 IKSVVN 544 (787)
Q Consensus 539 v~~VI~ 544 (787)
+.+||.
T Consensus 236 ~~~iVi 241 (479)
T 3fmp_B 236 IKVFVL 241 (479)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888885
No 455
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=27.99 E-value=82 Score=27.03 Aligned_cols=57 Identities=11% Similarity=0.105 Sum_probs=34.1
Q ss_pred CCEEEEEcCcHHHHHHHHH-HHHHHhhhcCce-EEEEECCCChHHHHHHHhcCCcEEEeCHH
Q 003910 298 GPIGVICAPTRELAHQIYL-ETKKFAKSHGIR-VSAVYGGMSKLDQFKELKAGCEIVIATPG 357 (787)
Q Consensus 298 ~p~vLIl~PtreLa~Qi~~-~~~~~~~~~~i~-v~~~~gg~~~~~~~~~l~~~~dIIV~Tp~ 357 (787)
..++|++|++=--..++.. .+++.++..++. +.+..-... .+......+|+||+||.
T Consensus 18 ~~kIlvvC~sG~gTS~m~~~kl~~~~~~~gi~~~~i~~~~~~---~~~~~~~~~DlIi~t~~ 76 (110)
T 3czc_A 18 MVKVLTACGNGMGSSMVIKMKVENALRQLGVSDIESASCSVG---EAKGLASNYDIVVASNH 76 (110)
T ss_dssp CEEEEEECCCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECHH---HHHHHGGGCSEEEEETT
T ss_pred CcEEEEECCCcHHHHHHHHHHHHHHHHHcCCCeEEEEEeeHH---HHhhccCCCcEEEECCc
Confidence 3568899997655555554 677777766766 433322221 22222356899999974
No 456
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=27.82 E-value=66 Score=39.24 Aligned_cols=87 Identities=14% Similarity=0.063 Sum_probs=56.0
Q ss_pred EEecCCCcchHHHH-HHhcCCcCCCCCEEEEecccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhcCCccEEE
Q 003910 447 VHVIPSDAEKLPWL-LEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLI 525 (787)
Q Consensus 447 ~~~~~~~~~k~~~L-~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~G~~~VLV 525 (787)
+...+....|-... +-++.......++||.+|++.-+...+..|....-.+..++|+.+.. ...+|||
T Consensus 105 LV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~~vglltGd~~~~-----------~~~~IvV 173 (1010)
T 2xgj_A 105 LVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITIN-----------PDAGCLV 173 (1010)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHSCEEEECSSCEEC-----------TTCSEEE
T ss_pred EEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHhCCEEEEeCCCccC-----------CCCCEEE
Confidence 34444555664322 11111112456899999999999999988887655889999987632 3568999
Q ss_pred Eeh-----hhhcc-CCCCCccEEEE
Q 003910 526 ATD-----VAARG-LDIKSIKSVVN 544 (787)
Q Consensus 526 aT~-----v~~rG-lDip~v~~VI~ 544 (787)
+|. .+.++ ..+..+.+||+
T Consensus 174 ~Tpe~L~~~L~~~~~~l~~l~lVVi 198 (1010)
T 2xgj_A 174 MTTEILRSMLYRGSEVMREVAWVIF 198 (1010)
T ss_dssp EEHHHHHHHHHHTCTTGGGEEEEEE
T ss_pred EcHHHHHHHHHcCcchhhcCCEEEE
Confidence 984 23333 45566777774
No 457
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=27.74 E-value=28 Score=33.15 Aligned_cols=18 Identities=33% Similarity=0.359 Sum_probs=15.0
Q ss_pred cCCCEEEEccCCCchhHH
Q 003910 261 SGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla 278 (787)
.+.-+++++++|+|||..
T Consensus 24 ~g~~i~l~G~sGsGKSTl 41 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTL 41 (200)
T ss_dssp CCEEEEEECSTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 456788999999999975
No 458
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=27.61 E-value=47 Score=37.96 Aligned_cols=30 Identities=17% Similarity=0.310 Sum_probs=21.8
Q ss_pred HHHHcCCCEEEEccCCCchhHHHHHHHHHHHh
Q 003910 257 PIILSGRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (787)
Q Consensus 257 ~~il~grdvii~a~TGsGKTla~llp~l~~l~ 288 (787)
..+..++.+++.+|+|+|||.. +-++..++
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTtl--ar~ia~~l 84 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSML--GQAMAELL 84 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHHH--HHHHHHTS
T ss_pred ccccCCCEEEEEeCCCCCHHHH--HHHHhccC
Confidence 3456789999999999999975 33344443
No 459
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=27.32 E-value=25 Score=36.06 Aligned_cols=16 Identities=31% Similarity=0.366 Sum_probs=13.7
Q ss_pred CCEEEEccCCCchhHH
Q 003910 263 RDIIGIAKTGSGKTAA 278 (787)
Q Consensus 263 rdvii~a~TGsGKTla 278 (787)
.-+|++|++|+|||..
T Consensus 34 ~livl~G~sGsGKSTl 49 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSL 49 (287)
T ss_dssp EEEEEECCTTSCTHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3588999999999975
No 460
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=27.17 E-value=38 Score=30.55 Aligned_cols=37 Identities=19% Similarity=0.399 Sum_probs=31.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHHcCCc-eeeccCCCC
Q 003910 469 DDGDVLVFASKKTTVDEIESQLAQKGFK-AAALHGDKD 505 (787)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~g~~-v~~lhg~~~ 505 (787)
...+++|||.+-..+..++..|...|+. +..|.|++.
T Consensus 55 ~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 92 (141)
T 3ilm_A 55 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 92 (141)
T ss_dssp TTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHHH
T ss_pred CCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 4567999999888889999999999995 888888864
No 461
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=27.06 E-value=2.2e+02 Score=33.53 Aligned_cols=93 Identities=12% Similarity=0.152 Sum_probs=58.4
Q ss_pred CCchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCChHHHHHHHhc----
Q 003910 272 GSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKA---- 347 (787)
Q Consensus 272 GsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~~~~~~~l~~---- 347 (787)
.+||-.. +.-++..+. ..+.++||.+..+..+..+...+... ++.+..+.|+.+..+....+..
T Consensus 554 ~s~K~~~-L~~lL~~~~-------~~g~kvLIFsq~~~~ld~L~~~L~~~----g~~~~~i~G~~~~~eR~~~i~~F~~~ 621 (800)
T 3mwy_W 554 SSGKMVL-LDQLLTRLK-------KDGHRVLIFSQMVRMLDILGDYLSIK----GINFQRLDGTVPSAQRRISIDHFNSP 621 (800)
T ss_dssp TCHHHHH-HHHHHHHHT-------TTTCCEEEEESCHHHHHHHHHHHHHH----TCCCEEESTTSCHHHHHHHHHTTSST
T ss_pred cChHHHH-HHHHHHHHh-------hCCCeEEEEechHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhCC
Confidence 4677653 555555553 23567999999988877666655543 8899999998877655444432
Q ss_pred CCc---EEEeCHHHHHHHHHhccccccceeEEEEechh
Q 003910 348 GCE---IVIATPGRLIDMLKMKALTMSRVTYLVLDEAD 382 (787)
Q Consensus 348 ~~d---IIV~Tp~~L~~~l~~~~~~l~~i~~lViDEah 382 (787)
... +|++| . . -...++|..++.||+=+.+
T Consensus 622 ~~~~~v~LlSt-~----a-gg~GlNL~~a~~VI~~D~~ 653 (800)
T 3mwy_W 622 DSNDFVFLLST-R----A-GGLGINLMTADTVVIFDSD 653 (800)
T ss_dssp TCSCCCEEEEH-H----H-HTTTCCCTTCCEEEESSCC
T ss_pred CCCceEEEEec-c----c-ccCCCCccccceEEEecCC
Confidence 122 45555 2 2 2345678888888774444
No 462
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=27.01 E-value=30 Score=31.72 Aligned_cols=16 Identities=25% Similarity=0.403 Sum_probs=14.0
Q ss_pred CCEEEEccCCCchhHH
Q 003910 263 RDIIGIAKTGSGKTAA 278 (787)
Q Consensus 263 rdvii~a~TGsGKTla 278 (787)
+.+++++++|||||.+
T Consensus 3 ~~I~l~G~~GsGKsT~ 18 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTV 18 (173)
T ss_dssp CCEEEESCTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 4689999999999975
No 463
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=26.98 E-value=35 Score=36.34 Aligned_cols=16 Identities=25% Similarity=0.397 Sum_probs=13.5
Q ss_pred CEEEEccCCCchhHHH
Q 003910 264 DIIGIAKTGSGKTAAF 279 (787)
Q Consensus 264 dvii~a~TGsGKTla~ 279 (787)
-.+|++++|+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4678999999999753
No 464
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=26.94 E-value=33 Score=31.92 Aligned_cols=15 Identities=27% Similarity=0.178 Sum_probs=13.1
Q ss_pred CEEEEccCCCchhHH
Q 003910 264 DIIGIAKTGSGKTAA 278 (787)
Q Consensus 264 dvii~a~TGsGKTla 278 (787)
-++++++.|+|||..
T Consensus 3 ~I~i~G~~GsGKsT~ 17 (194)
T 1nks_A 3 IGIVTGIPGVGKSTV 17 (194)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999975
No 465
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=26.75 E-value=33 Score=33.37 Aligned_cols=17 Identities=24% Similarity=0.233 Sum_probs=14.7
Q ss_pred CCCEEEEccCCCchhHH
Q 003910 262 GRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 262 grdvii~a~TGsGKTla 278 (787)
...+++++++|||||.+
T Consensus 7 ~~~I~l~G~~GsGKsT~ 23 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTV 23 (227)
T ss_dssp CCEEEEEECTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45689999999999975
No 466
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=26.72 E-value=34 Score=33.15 Aligned_cols=17 Identities=18% Similarity=0.247 Sum_probs=13.8
Q ss_pred CEEEEccCCCchhHHHH
Q 003910 264 DIIGIAKTGSGKTAAFV 280 (787)
Q Consensus 264 dvii~a~TGsGKTla~l 280 (787)
.+++.+|+||||+.++-
T Consensus 2 ~Iil~GpPGsGKgTqa~ 18 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAK 18 (206)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999997643
No 467
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=26.71 E-value=38 Score=32.79 Aligned_cols=16 Identities=19% Similarity=0.202 Sum_probs=14.4
Q ss_pred CCEEEEccCCCchhHH
Q 003910 263 RDIIGIAKTGSGKTAA 278 (787)
Q Consensus 263 rdvii~a~TGsGKTla 278 (787)
..+++++++|||||.+
T Consensus 6 ~~I~l~G~~GsGKsT~ 21 (222)
T 1zak_A 6 LKVMISGAPASGKGTQ 21 (222)
T ss_dssp CCEEEEESTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 5789999999999976
No 468
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=26.56 E-value=30 Score=37.88 Aligned_cols=53 Identities=19% Similarity=0.169 Sum_probs=29.1
Q ss_pred CccCCccccCCCHHHHHHHHHCCC---CCCcHHHHHHHHHHHcCCCEEEEccCCCchhHH
Q 003910 222 RPVKTFEDCGFSTQLMHAISKQGY---EKPTSIQCQALPIILSGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 222 ~pi~sf~~~~l~~~l~~~l~~~g~---~~ptp~Q~~ai~~il~grdvii~a~TGsGKTla 278 (787)
.|-.+|+++.-...+.+.|...-. ..|.-++ ......+.+|+.+|+|+|||+.
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~----~~~~~~~~vLL~GppGtGKT~l 183 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFT----GKRTPWRGILLFGPPGTGKSYL 183 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTS----GGGCCCSEEEEECSTTSSHHHH
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhh----ccCCCCceEEEECCCCCCHHHH
Confidence 344678887655566555543200 0000000 0011236799999999999975
No 469
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=26.44 E-value=96 Score=29.32 Aligned_cols=48 Identities=10% Similarity=0.225 Sum_probs=39.5
Q ss_pred CCCEEEEeccc-----------ccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhc
Q 003910 470 DGDVLVFASKK-----------TTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKS 518 (787)
Q Consensus 470 ~~kvLVF~~s~-----------~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~ 518 (787)
.+.+|||.+.. .+++.|.+.|...||.|. ++.+++..+-..+++.|..
T Consensus 43 ~g~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~f~~ 101 (178)
T 2h54_A 43 TRLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVD-VKKNLTASDMTTELEAFAH 101 (178)
T ss_dssp CCEEEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHT
T ss_pred CCEEEEEehhhcCCCccCCCCHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHh
Confidence 35678888753 678999999999999976 5568999999999999964
No 470
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=26.41 E-value=36 Score=32.90 Aligned_cols=17 Identities=24% Similarity=0.387 Sum_probs=14.6
Q ss_pred CCCEEEEccCCCchhHH
Q 003910 262 GRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 262 grdvii~a~TGsGKTla 278 (787)
+..+++++++|||||.+
T Consensus 4 ~~~I~l~G~~GsGKsT~ 20 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQ 20 (220)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45689999999999975
No 471
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=26.20 E-value=35 Score=31.76 Aligned_cols=15 Identities=27% Similarity=0.403 Sum_probs=13.3
Q ss_pred CEEEEccCCCchhHH
Q 003910 264 DIIGIAKTGSGKTAA 278 (787)
Q Consensus 264 dvii~a~TGsGKTla 278 (787)
-+++++++|||||.+
T Consensus 8 ~I~l~G~~GsGKsT~ 22 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQ 22 (194)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578999999999975
No 472
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=26.20 E-value=34 Score=32.81 Aligned_cols=24 Identities=17% Similarity=0.116 Sum_probs=16.7
Q ss_pred CCCEEEEccCCCchhHHHHHHHHHHH
Q 003910 262 GRDIIGIAKTGSGKTAAFVLPMIVHI 287 (787)
Q Consensus 262 grdvii~a~TGsGKTla~llp~l~~l 287 (787)
+.-+.|.+++|||||.. +-+|..+
T Consensus 22 g~~v~I~G~sGsGKSTl--~~~l~~~ 45 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTL--SNPLAAA 45 (208)
T ss_dssp CEEEEEECCTTSCTHHH--HHHHHHH
T ss_pred CeEEEEECCCCCCHHHH--HHHHHHH
Confidence 44677899999999964 3344444
No 473
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=26.17 E-value=81 Score=33.41 Aligned_cols=26 Identities=8% Similarity=0.101 Sum_probs=15.9
Q ss_pred CHHHHHHHHHhccccccceeEEEEech
Q 003910 355 TPGRLIDMLKMKALTMSRVTYLVLDEA 381 (787)
Q Consensus 355 Tp~~L~~~l~~~~~~l~~i~~lViDEa 381 (787)
++..+..++..-. .+..+++||||=.
T Consensus 243 ~~~~~~~ll~~l~-~~~~yD~VIID~p 268 (373)
T 3fkq_A 243 SYADIDTLIGNIQ-GMDNYDEIIVDLP 268 (373)
T ss_dssp CHHHHHHHHHHHH-HTSCCSEEEEECC
T ss_pred CHHHHHHHHHHHH-hcCCCCEEEEeCC
Confidence 5566655554322 2457899999944
No 474
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=26.08 E-value=41 Score=32.37 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=16.8
Q ss_pred CEEEEccCCCchhHHHHHHHHHHHhc
Q 003910 264 DIIGIAKTGSGKTAAFVLPMIVHIMD 289 (787)
Q Consensus 264 dvii~a~TGsGKTla~llp~l~~l~~ 289 (787)
-.+|++++|+|||.. +-++..++.
T Consensus 25 ~~~I~G~NgsGKSti--l~ai~~~l~ 48 (203)
T 3qks_A 25 INLIIGQNGSGKSSL--LDAILVGLY 48 (203)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHHH
T ss_pred eEEEEcCCCCCHHHH--HHHHHHHhc
Confidence 467889999999975 444444443
No 475
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=26.08 E-value=26 Score=32.65 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=14.9
Q ss_pred cCCCEEEEccCCCchhHH
Q 003910 261 SGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla 278 (787)
.|.-+++++.+|||||.+
T Consensus 4 ~g~~i~l~G~~GsGKST~ 21 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTV 21 (179)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 355688999999999975
No 476
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=25.97 E-value=36 Score=32.10 Aligned_cols=15 Identities=40% Similarity=0.501 Sum_probs=12.8
Q ss_pred CEEEEccCCCchhHH
Q 003910 264 DIIGIAKTGSGKTAA 278 (787)
Q Consensus 264 dvii~a~TGsGKTla 278 (787)
.+.+.++.|+|||..
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999964
No 477
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=25.83 E-value=1.4e+02 Score=32.95 Aligned_cols=90 Identities=19% Similarity=0.166 Sum_probs=51.9
Q ss_pred EEecCCCcchHHH----HHHhcCCcCCCCCEEEEecccccHHHHHHHHHHcC----CceeeccCCCCHHHHHHHHHHhhc
Q 003910 447 VHVIPSDAEKLPW----LLEKLPGMIDDGDVLVFASKKTTVDEIESQLAQKG----FKAAALHGDKDQASRMEILQKFKS 518 (787)
Q Consensus 447 ~~~~~~~~~k~~~----L~~~L~~~~~~~kvLVF~~s~~~a~~l~~~L~~~g----~~v~~lhg~~~~~eR~~~l~~F~~ 518 (787)
+...+....|-.. ++..+.......++||.++++.-+..+.+.+.... +.+....++.... -..
T Consensus 162 ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 233 (508)
T 3fho_A 162 IGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPK--------GAK 233 (508)
T ss_dssp EEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC------------------C
T ss_pred EEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCcccc--------ccc
Confidence 3445555666543 34444443344589999999999999999888753 2333333322111 112
Q ss_pred CCccEEEEehh-hh-----ccCCCCCccEEEE
Q 003910 519 GVYHVLIATDV-AA-----RGLDIKSIKSVVN 544 (787)
Q Consensus 519 G~~~VLVaT~v-~~-----rGlDip~v~~VI~ 544 (787)
...+|+|+|.- +. ..+++..+++||.
T Consensus 234 ~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIi 265 (508)
T 3fho_A 234 IDAQIVIGTPGTVMDLMKRRQLDARDIKVFVL 265 (508)
T ss_dssp CCCSEEEECHHHHHHHHHTTCSCCTTCCEEEE
T ss_pred CCCCEEEECHHHHHHHHHcCCccccCCCEEEE
Confidence 36789999932 22 3567778888875
No 478
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=25.80 E-value=43 Score=31.14 Aligned_cols=16 Identities=25% Similarity=0.397 Sum_probs=14.0
Q ss_pred CCEEEEccCCCchhHH
Q 003910 263 RDIIGIAKTGSGKTAA 278 (787)
Q Consensus 263 rdvii~a~TGsGKTla 278 (787)
..+++++++|||||.+
T Consensus 3 ~~I~l~G~~GsGKsT~ 18 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTI 18 (184)
T ss_dssp CSEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4689999999999975
No 479
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=25.78 E-value=37 Score=36.10 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=0.0
Q ss_pred EEEEccCCCchhHHHHHHHHHHHh
Q 003910 265 IIGIAKTGSGKTAAFVLPMIVHIM 288 (787)
Q Consensus 265 vii~a~TGsGKTla~llp~l~~l~ 288 (787)
.+++++||+|||.. +=++..++
T Consensus 28 ~vi~G~NGaGKT~i--leAI~~~l 49 (371)
T 3auy_A 28 VAIIGENGSGKSSI--FEAVFFAL 49 (371)
T ss_dssp EEEEECTTSSHHHH--HHHHHHHH
T ss_pred EEEECCCCCCHHHH--HHHHHHHH
No 480
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=25.75 E-value=82 Score=31.94 Aligned_cols=38 Identities=16% Similarity=0.249 Sum_probs=32.6
Q ss_pred cccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHhhc
Q 003910 480 KTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKS 518 (787)
Q Consensus 480 ~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F~~ 518 (787)
..+++.|.+.|+..||.|. ++.+++..+-.++++.|..
T Consensus 48 ~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~~~~ 85 (271)
T 3h11_B 48 HLDAGALTTTFEELHFEIK-PHDDCTVEQIYEILKIYQL 85 (271)
T ss_dssp HHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHHHHH
Confidence 3578899999999999975 5568999999999999975
No 481
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=25.63 E-value=1.2e+02 Score=25.51 Aligned_cols=47 Identities=17% Similarity=0.158 Sum_probs=35.0
Q ss_pred CCCEEEEec------ccccHHHHHHHHHHcCCceeeccCCCCHHHHHHHHHHh
Q 003910 470 DGDVLVFAS------KKTTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKF 516 (787)
Q Consensus 470 ~~kvLVF~~------s~~~a~~l~~~L~~~g~~v~~lhg~~~~~eR~~~l~~F 516 (787)
..+++||.. .--.|..+..+|...++.+..++=+.....+.......
T Consensus 14 ~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~ 66 (109)
T 1wik_A 14 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFS 66 (109)
T ss_dssp TSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHH
T ss_pred cCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHh
Confidence 457999977 44579999999999999888887766665555554443
No 482
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=25.59 E-value=30 Score=32.87 Aligned_cols=16 Identities=25% Similarity=0.370 Sum_probs=13.6
Q ss_pred CCEEEEccCCCchhHH
Q 003910 263 RDIIGIAKTGSGKTAA 278 (787)
Q Consensus 263 rdvii~a~TGsGKTla 278 (787)
+-+++++++|||||.+
T Consensus 16 ~~I~l~G~~GsGKsT~ 31 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQ 31 (203)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 3578899999999975
No 483
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=25.56 E-value=37 Score=32.57 Aligned_cols=15 Identities=27% Similarity=0.505 Sum_probs=13.2
Q ss_pred CEEEEccCCCchhHH
Q 003910 264 DIIGIAKTGSGKTAA 278 (787)
Q Consensus 264 dvii~a~TGsGKTla 278 (787)
.++++++.|||||.+
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999976
No 484
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=25.52 E-value=43 Score=36.94 Aligned_cols=17 Identities=35% Similarity=0.448 Sum_probs=14.9
Q ss_pred CCCEEEEccCCCchhHH
Q 003910 262 GRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 262 grdvii~a~TGsGKTla 278 (787)
..++|+++|+|+|||..
T Consensus 201 ~~~~LL~G~pG~GKT~l 217 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAI 217 (468)
T ss_dssp SCEEEEESCTTTTTHHH
T ss_pred CCCeEEECCCCCCHHHH
Confidence 35899999999999975
No 485
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=25.33 E-value=50 Score=35.06 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=18.3
Q ss_pred cCCCEEEEccCCCchhHHHHHHHHHHHh
Q 003910 261 SGRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla~llp~l~~l~ 288 (787)
.+.-+.+++++|+|||.. +..|..++
T Consensus 156 ~g~vi~lvG~nGsGKTTl--l~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTS--LGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHH--HHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHH--HHHHHhhc
Confidence 345688999999999975 44444443
No 486
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=25.20 E-value=60 Score=39.63 Aligned_cols=64 Identities=19% Similarity=0.266 Sum_probs=38.9
Q ss_pred cCCccccC--CCHHHHHHHHHCCCCC--C--cHHHHHHHHHHHc---CCCEEEEccCCCchhHHHHHHHHHHHh
Q 003910 224 VKTFEDCG--FSTQLMHAISKQGYEK--P--TSIQCQALPIILS---GRDIIGIAKTGSGKTAAFVLPMIVHIM 288 (787)
Q Consensus 224 i~sf~~~~--l~~~l~~~l~~~g~~~--p--tp~Q~~ai~~il~---grdvii~a~TGsGKTla~llp~l~~l~ 288 (787)
+..|..++ ..+..++......... | ..+-..|+..++. .+.+|+.++.|+|||.+. -.++.++.
T Consensus 97 VNPyk~lp~iY~~~~~~~Y~g~~~~~lpPHIfaiA~~AY~~M~~~~~nQsIiiSGESGAGKTest-K~im~yLa 169 (1052)
T 4anj_A 97 VNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENT-KFVLRYLT 169 (1052)
T ss_dssp ECCSSCCTTTTSHHHHHHHTTCCBTTBCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH-HHHHHHHH
T ss_pred ECCCCCccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHHhCCCceEEEecCCCCCHHHHH-HHHHHHHH
Confidence 44455553 3667777665543332 3 3344555555553 346999999999999874 44556654
No 487
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=25.19 E-value=3e+02 Score=26.55 Aligned_cols=81 Identities=17% Similarity=0.157 Sum_probs=49.4
Q ss_pred HcCCCEEEEccCC-CchhHHHHHHHHHHHhcCcccccCCCCEEEEEcCcHHHHHHHHHHHHHHhhhcCceEEEEECCCCh
Q 003910 260 LSGRDIIGIAKTG-SGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSK 338 (787)
Q Consensus 260 l~grdvii~a~TG-sGKTla~llp~l~~l~~~~~~~~~~~p~vLIl~PtreLa~Qi~~~~~~~~~~~~i~v~~~~gg~~~ 338 (787)
+.++.+||.+.+| .|+.++- ++.. .+..++++.-+.+-..++.+++... +-++..+......
T Consensus 7 ~~~k~vlITGas~giG~~~a~------~l~~-------~G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~ 69 (253)
T 3qiv_A 7 FENKVGIVTGSGGGIGQAYAE------ALAR-------EGAAVVVADINAEAAEAVAKQIVAD----GGTAISVAVDVSD 69 (253)
T ss_dssp TTTCEEEEETTTSHHHHHHHH------HHHH-------TTCEEEEEESCHHHHHHHHHHHHHT----TCEEEEEECCTTS
T ss_pred cCCCEEEEECCCChHHHHHHH------HHHH-------CCCEEEEEcCCHHHHHHHHHHHHhc----CCcEEEEEccCCC
Confidence 3567788877654 3666542 2222 2566777777777666666666543 4566677777776
Q ss_pred HHHHHHHhc-------CCcEEEeCHH
Q 003910 339 LDQFKELKA-------GCEIVIATPG 357 (787)
Q Consensus 339 ~~~~~~l~~-------~~dIIV~Tp~ 357 (787)
...+..+.. ..|+||...+
T Consensus 70 ~~~~~~~~~~~~~~~g~id~li~~Ag 95 (253)
T 3qiv_A 70 PESAKAMADRTLAEFGGIDYLVNNAA 95 (253)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 665554432 5777776654
No 488
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=25.01 E-value=26 Score=32.52 Aligned_cols=18 Identities=28% Similarity=0.110 Sum_probs=10.7
Q ss_pred cCCCEEEEccCCCchhHH
Q 003910 261 SGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla 278 (787)
.+.-+++++..|||||.+
T Consensus 4 ~~~~I~l~G~~GsGKST~ 21 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHT 21 (183)
T ss_dssp -CCEEEEECCC----CHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 345688999999999975
No 489
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=24.99 E-value=32 Score=31.41 Aligned_cols=15 Identities=33% Similarity=0.255 Sum_probs=13.1
Q ss_pred CEEEEccCCCchhHH
Q 003910 264 DIIGIAKTGSGKTAA 278 (787)
Q Consensus 264 dvii~a~TGsGKTla 278 (787)
.+++++.+|||||.+
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTV 16 (168)
T ss_dssp EEEEESCTTSCHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 478999999999975
No 490
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=24.86 E-value=39 Score=32.46 Aligned_cols=15 Identities=20% Similarity=0.479 Sum_probs=13.2
Q ss_pred CEEEEccCCCchhHH
Q 003910 264 DIIGIAKTGSGKTAA 278 (787)
Q Consensus 264 dvii~a~TGsGKTla 278 (787)
.++++++.|||||.+
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999976
No 491
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=24.86 E-value=39 Score=33.16 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=14.2
Q ss_pred CCEEEEccCCCchhHHH
Q 003910 263 RDIIGIAKTGSGKTAAF 279 (787)
Q Consensus 263 rdvii~a~TGsGKTla~ 279 (787)
+-+++.+|+||||+.+.
T Consensus 30 kiI~llGpPGsGKgTqa 46 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQC 46 (217)
T ss_dssp EEEEEECCTTCCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 45788999999998764
No 492
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=24.81 E-value=35 Score=30.40 Aligned_cols=37 Identities=8% Similarity=0.288 Sum_probs=31.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHHcCCc-eeeccCCCC
Q 003910 469 DDGDVLVFASKKTTVDEIESQLAQKGFK-AAALHGDKD 505 (787)
Q Consensus 469 ~~~kvLVF~~s~~~a~~l~~~L~~~g~~-v~~lhg~~~ 505 (787)
...+++|||.+-..+..++..|...|+. +..+.|++.
T Consensus 90 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 127 (139)
T 3d1p_A 90 SAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMN 127 (139)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHH
T ss_pred CCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 3568999999988889999999999995 888888864
No 493
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=24.77 E-value=45 Score=31.76 Aligned_cols=41 Identities=17% Similarity=0.150 Sum_probs=24.4
Q ss_pred ccceeEEEEechhhhh--cCCChHHHHHHhhhcCCCceEEEEeccC
Q 003910 370 MSRVTYLVLDEADRMF--DLGFEPQIRSIVGQIRPDRQTLLFSATM 413 (787)
Q Consensus 370 l~~i~~lViDEah~m~--~~~f~~~i~~il~~~~~~~q~ll~SAT~ 413 (787)
+...++|||||+..|- +..|...+..++.. ...+|+-+.|.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~---~~~~ilgti~v 145 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLST---PGTIILGTIPV 145 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC---SSCCEEEECCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhC---CCcEEEEEeec
Confidence 4667899999988773 33355555555543 22244435564
No 494
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=24.66 E-value=35 Score=31.91 Aligned_cols=17 Identities=35% Similarity=0.335 Sum_probs=14.5
Q ss_pred CCCEEEEccCCCchhHH
Q 003910 262 GRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 262 grdvii~a~TGsGKTla 278 (787)
+.-+++++.+|+|||..
T Consensus 13 ~~~i~l~G~~GsGKsT~ 29 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTI 29 (186)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CcEEEEEcCCCCCHHHH
Confidence 45688999999999975
No 495
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=24.62 E-value=40 Score=31.74 Aligned_cols=15 Identities=27% Similarity=0.437 Sum_probs=13.0
Q ss_pred CEEEEccCCCchhHH
Q 003910 264 DIIGIAKTGSGKTAA 278 (787)
Q Consensus 264 dvii~a~TGsGKTla 278 (787)
.+++++++|||||..
T Consensus 2 ~I~i~G~~GsGKsT~ 16 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTI 16 (205)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCccCHHHH
Confidence 378899999999975
No 496
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=24.54 E-value=29 Score=33.91 Aligned_cols=18 Identities=28% Similarity=0.394 Sum_probs=11.3
Q ss_pred cCCCEEEEccCCCchhHH
Q 003910 261 SGRDIIGIAKTGSGKTAA 278 (787)
Q Consensus 261 ~grdvii~a~TGsGKTla 278 (787)
.|+-+.+++|+|+|||..
T Consensus 26 ~G~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTV 43 (231)
T ss_dssp CCCEEEEECSCC----CH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 566788999999999975
No 497
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=24.52 E-value=40 Score=31.97 Aligned_cols=16 Identities=19% Similarity=0.399 Sum_probs=13.9
Q ss_pred CCEEEEccCCCchhHH
Q 003910 263 RDIIGIAKTGSGKTAA 278 (787)
Q Consensus 263 rdvii~a~TGsGKTla 278 (787)
..+++++++|||||.+
T Consensus 21 ~~I~l~G~~GsGKST~ 36 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQ 36 (201)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4588999999999975
No 498
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=24.45 E-value=60 Score=33.81 Aligned_cols=32 Identities=22% Similarity=0.198 Sum_probs=0.0
Q ss_pred EEEEccCCCchhHHHHHHHHHHHhcCcccccCCCCEEEEE
Q 003910 265 IIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVIC 304 (787)
Q Consensus 265 vii~a~TGsGKTla~llp~l~~l~~~~~~~~~~~p~vLIl 304 (787)
+++++++|+|||......+.... ..+.+++++
T Consensus 108 I~ivG~~G~GKTT~~~~LA~~l~--------~~g~kVlli 139 (320)
T 1zu4_A 108 FMLVGVNGTGKTTSLAKMANYYA--------ELGYKVLIA 139 (320)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHH--------HTTCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHH--------HCCCeEEEE
No 499
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=24.20 E-value=33 Score=32.69 Aligned_cols=15 Identities=33% Similarity=0.246 Sum_probs=0.0
Q ss_pred EEEEccCCCchhHHH
Q 003910 265 IIGIAKTGSGKTAAF 279 (787)
Q Consensus 265 vii~a~TGsGKTla~ 279 (787)
+.+.+++|||||...
T Consensus 5 i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
No 500
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=24.16 E-value=46 Score=38.92 Aligned_cols=26 Identities=35% Similarity=0.542 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCC--EEEEccCCCchhHH
Q 003910 253 CQALPIILSGRD--IIGIAKTGSGKTAA 278 (787)
Q Consensus 253 ~~ai~~il~grd--vii~a~TGsGKTla 278 (787)
...|..+++|.| ++..++||||||.+
T Consensus 452 ~~~v~~~~~G~n~~i~ayGqtgsGKT~T 479 (715)
T 4h1g_A 452 SQLIQCSLDGTNVCVFAYGQTGSGKTFT 479 (715)
T ss_dssp HHHHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHHHhCCceEEEEccCCCCCchhhc
Done!