Your job contains 1 sequence.
>003912
MFYSRSLLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEELDVMTYRVLAYL
LLGLVRIYSKKVEYLFDDCNDAVVKINNFLVSEKSMKNLGNLCAPYCSITLPESFELDAF
DLEILEDISGENAVPLEQITLKDGASAAAGKGHYSLSKYCCKEYAAWDDSFSGDYSPADD
IFSSHLMEIGMVVSATYSNLNANMENLQSNNDGGVTEPIEPVGEKHQTNEDMKAAETAQS
EKRLEKLQDNSFHGVEEESLDPIKLCGKDHRSDGEQTMVPDIAQLEKETCQATSKDINKN
ITMLQASTEKLCEHEVPQVCSGVEMCYGSKEELPKQVELSGEEHHSNTEQMKVMEISSRN
NECQVMKREDPLSVTVDATPQSKFLDASGATTPEFMVVQTPATKECARISRKRKCCFDDV
TVFPNDVMRQCIQDASDLVSKRRKVPRTVLAAWKASRISNLSQGFLLPLLPCISLELRAF
LCQERLKIPETAKSVELLEPELPTVHKSLEKMAITSGTPIGRSSQNMGIAPNTRTGISLE
KMAVAPGTPTGRSSEKMVVAPETPTGGSSEKMVVAPETPTCRSPEKRAFAPDTPTGRSSE
KMAVAPATPTGRSSETMAIAPDTLTVKSSELIAMTIESPIFLSVPSRSFETPENAHSIAV
ETLADSYATPKKDLASSKDEDFDLIFMNEESNFGEVDRQESYGFSARTRMVAKYLHRRFL
CHKERREDEAIKLLPLLEGRTVKETARIFYEILVLQTKGIVNVKQDDAYGDILVVKAPWW
DQSCGAL
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 003912
(787 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2164501 - symbol:SYN2 species:3702 "Arabidopsi... 499 2.2e-71 2
TAIR|locus:2181457 - symbol:SYN4 "sister chromatid cohesi... 317 8.5e-34 2
TAIR|locus:2097548 - symbol:SYN3 "AT3G59550" species:3702... 265 2.0e-28 3
ZFIN|ZDB-GENE-030131-994 - symbol:rad21a "RAD21 homolog (... 247 1.6e-27 3
UNIPROTKB|O60216 - symbol:RAD21 "Double-strand-break repa... 255 4.0e-27 4
MGI|MGI:108016 - symbol:Rad21 "RAD21 homolog (S. pombe)" ... 252 4.6e-27 4
UNIPROTKB|Q3SWX9 - symbol:RAD21 "Double-strand-break repa... 248 9.7e-27 4
RGD|1594529 - symbol:Rad21 "RAD21 homolog (S. pombe)" spe... 250 9.9e-27 4
ZFIN|ZDB-GENE-060503-223 - symbol:rad21b "RAD21 homolog (... 246 1.0e-26 3
UNIPROTKB|E2QRU9 - symbol:RAD21 "Uncharacterized protein"... 250 1.2e-26 4
UNIPROTKB|F1S1K0 - symbol:LOC100738633 "Uncharacterized p... 250 1.2e-26 4
UNIPROTKB|F1NYD0 - symbol:RAD21 "Uncharacterized protein"... 250 5.0e-26 4
UNIPROTKB|O93310 - symbol:rad21 "Double-strand-break repa... 246 6.8e-25 3
FB|FBgn0260987 - symbol:vtd "verthandi" species:7227 "Dro... 250 7.0e-24 4
UNIPROTKB|D2HSB3 - symbol:RAD21L1 "Double-strand-break re... 247 3.0e-21 3
UNIPROTKB|E5RFV8 - symbol:RAD21 "Double-strand-break repa... 255 9.2e-21 1
UNIPROTKB|E5RIN7 - symbol:RAD21 "Double-strand-break repa... 255 9.2e-21 1
UNIPROTKB|E1B9J3 - symbol:RAD21L1 "Uncharacterized protei... 246 3.4e-20 3
UNIPROTKB|F1PWJ5 - symbol:RAD21L1 "Uncharacterized protei... 245 5.3e-20 3
RGD|1587557 - symbol:Rad21l1 "RAD21-like 1 (S. pombe)" sp... 246 6.3e-20 2
ZFIN|ZDB-GENE-061103-505 - symbol:rad21l1 "RAD21-like 1 (... 246 1.2e-19 2
POMBASE|SPCC338.17c - symbol:rad21 "mitotic cohesin compl... 216 1.4e-19 2
UNIPROTKB|E5RJK5 - symbol:RAD21 "Double-strand-break repa... 239 4.8e-19 1
WB|WBGene00004737 - symbol:scc-1 species:6239 "Caenorhabd... 235 5.8e-19 3
UNIPROTKB|E5RJW1 - symbol:RAD21 "Double-strand-break repa... 238 6.1e-19 1
UNIPROTKB|Q9H4I0 - symbol:RAD21L1 "Double-strand-break re... 237 2.2e-18 2
UNIPROTKB|E1BTU9 - symbol:RAD21L1 "Uncharacterized protei... 235 3.9e-18 2
MGI|MGI:3652039 - symbol:Rad21l "RAD21-like (S. pombe)" s... 238 7.0e-18 2
UNIPROTKB|E1C938 - symbol:RAD21L1 "Uncharacterized protei... 230 1.2e-17 2
UNIPROTKB|E1BTV6 - symbol:RAD21L1 "Uncharacterized protei... 230 1.3e-17 2
WB|WBGene00000591 - symbol:coh-1 species:6239 "Caenorhabd... 221 1.4e-17 3
ASPGD|ASPL0000069046 - symbol:AN7465 species:162425 "Emer... 227 2.2e-17 2
UNIPROTKB|F1S874 - symbol:RAD21L1 "Uncharacterized protei... 238 1.1e-16 2
UNIPROTKB|G4MR40 - symbol:MGG_09891 "Double-strand-break ... 202 5.8e-15 3
TAIR|locus:2169667 - symbol:SYN1 "SYNAPTIC 1" species:370... 159 1.3e-12 3
DICTYBASE|DDB_G0276977 - symbol:rad21 "cohesin subunit" s... 181 1.4e-11 2
CGD|CAL0000863 - symbol:MCD1 species:5476 "Candida albica... 146 1.7e-11 3
SGD|S000002161 - symbol:MCD1 "Essential alpha-kleisin sub... 125 3.1e-07 2
UNIPROTKB|F5H6H7 - symbol:TNFRSF10C "Tumor necrosis facto... 127 4.7e-07 1
WB|WBGene00007282 - symbol:clec-223 species:6239 "Caenorh... 154 1.2e-05 2
UNIPROTKB|E5RI01 - symbol:RAD21 "Double-strand-break repa... 112 1.9e-05 1
UNIPROTKB|E1BL69 - symbol:REC8 "Uncharacterized protein" ... 98 2.8e-05 3
UNIPROTKB|O14798 - symbol:TNFRSF10C "Tumor necrosis facto... 127 4.0e-05 1
UNIPROTKB|F1SGN3 - symbol:REC8 "Uncharacterized protein" ... 91 7.4e-05 3
UNIPROTKB|H0YLK4 - symbol:REC8 "Meiotic recombination pro... 88 0.00024 3
UNIPROTKB|O95072 - symbol:REC8 "Meiotic recombination pro... 88 0.00024 3
UNIPROTKB|E5RFZ5 - symbol:RAD21 "Double-strand-break repa... 114 0.00024 1
WB|WBGene00021580 - symbol:clec-174 species:6239 "Caenorh... 121 0.00060 1
>TAIR|locus:2164501 [details] [associations]
symbol:SYN2 species:3702 "Arabidopsis thaliana"
[GO:0000228 "nuclear chromosome" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISM;ISS] [GO:0000798 "nuclear cohesin complex"
evidence=ISS] [GO:0007067 "mitosis" evidence=IEP;RCA] [GO:0006302
"double-strand break repair" evidence=RCA;IMP] [GO:0000278 "mitotic
cell cycle" evidence=RCA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=RCA] [GO:0000911
"cytokinesis by cell plate formation" evidence=RCA] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] [GO:0006275
"regulation of DNA replication" evidence=RCA] [GO:0006306 "DNA
methylation" evidence=RCA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=RCA] [GO:0007129 "synapsis"
evidence=RCA] [GO:0007131 "reciprocal meiotic recombination"
evidence=RCA] [GO:0009555 "pollen development" evidence=RCA]
[GO:0009560 "embryo sac egg cell differentiation" evidence=RCA]
[GO:0010212 "response to ionizing radiation" evidence=RCA]
[GO:0010332 "response to gamma radiation" evidence=RCA] [GO:0010564
"regulation of cell cycle process" evidence=RCA] [GO:0016444
"somatic cell DNA recombination" evidence=RCA] [GO:0016568
"chromatin modification" evidence=RCA] [GO:0031047 "gene silencing
by RNA" evidence=RCA] [GO:0043687 "post-translational protein
modification" evidence=RCA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=RCA] [GO:0051726 "regulation
of cell cycle" evidence=RCA] InterPro:IPR006909 InterPro:IPR006910
Pfam:PF04824 Pfam:PF04825 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0007059 GO:GO:0051301 GO:GO:0007067 GO:GO:0006302
EMBL:AB011477 KO:K06670 Gene3D:1.10.10.580 InterPro:IPR023093
EMBL:AF281154 EMBL:AF400126 EMBL:AF400127 IPI:IPI00520467
IPI:IPI00524230 RefSeq:NP_568586.2 RefSeq:NP_851110.1
UniGene:At.9228 ProteinModelPortal:Q9FQ20 STRING:Q9FQ20
PaxDb:Q9FQ20 PRIDE:Q9FQ20 EnsemblPlants:AT5G40840.2 GeneID:834084
KEGG:ath:AT5G40840 TAIR:At5g40840 eggNOG:NOG315638
HOGENOM:HOG000064652 InParanoid:Q9FQ20 OMA:AIWVAAY PhylomeDB:Q9FQ20
ProtClustDB:CLSN2680390 Genevestigator:Q9FQ20 GermOnline:AT5G40840
GO:GO:0000798 Uniprot:Q9FQ20
Length = 810
Score = 499 (180.7 bits), Expect = 2.2e-71, Sum P(2) = 2.2e-71
Identities = 131/355 (36%), Positives = 200/355 (56%)
Query: 1 MFYSRSLLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEELDVMTYRVLAYL 60
MFYS L+SRKGPLGAIWVAAY FK+LKK+QV T+IPSSVD+IL++ELD +TYRVLAYL
Sbjct: 1 MFYSHCLVSRKGPLGAIWVAAYFFKKLKKSQVKATHIPSSVDQILQKELDALTYRVLAYL 60
Query: 61 LLGLVRIYSKKVEYLFDDCNDAVVKINNFLVSEKSMKNLG-NLCAPY-C-SITLPESFEL 117
LLG+VRIYSKKV++LFDDCN A++ + F+ E++ + G +L A C SI LPE FEL
Sbjct: 61 LLGVVRIYSKKVDFLFDDCNKALIGVKEFVAKERNREKTGVSLPASIECFSIALPERFEL 120
Query: 118 DAFDLEILEDISGENAVPLEQITLKDGASAAAGKGHYSLSKYCCKE--YAAWDDSFSGDY 175
DAFDL +LED G N P E ITLKDG+ YS+ ++ +E + ++FS ++
Sbjct: 121 DAFDLGVLEDFHGGNVKPHEDITLKDGSQETERMDMYSMERFDMEEDLLFTFHETFSTNH 180
Query: 176 SPADDIFSSHLMEIGMVVSATYSNLNANMENLQSNNDGGVTEPIEPVGEKHQTNEDMKAA 235
+ +H ME+ + EN++ + +E E +NE +
Sbjct: 181 NENKHESFAHDMEL-------------DAENVRDTTEEASVRVVE--AEPLDSNEPSRDH 225
Query: 236 ETAQSEKRLEKLQDNSFHGVEEESLDPIKLCGK-DHRSDGEQTMVPDIAQLEKETCQATS 294
+ A S R + D+ +E + + I++ + D + T+V + + +
Sbjct: 226 QNA-SRHREDPESDDIL--LEPQMSEDIRIAQEEDTVRETICTIVQRLVDSHESSGDNLH 282
Query: 295 KDIN-KNITMLQASTEKLCE---HE--VPQVCSGVEMCYGSKEELPKQVELSGEE 343
+D + +N+ + S + CE H+ +P C E +G +++ ++GE+
Sbjct: 283 RDGHTENLESEKTSKKTSCEEMQHDRSLPSECGIPEAIHGIEDQPSGATRINGEK 337
Score = 334 (122.6 bits), Expect = 1.0e-26, P = 1.0e-26
Identities = 122/402 (30%), Positives = 189/402 (47%)
Query: 271 RSDGEQTMVPDIAQLEK-ETCQAT-SKDINKNITMLQASTEKLCEHEVPQVCSGVEMCYG 328
R +GE+ +P+++ LEK E T S+D LQ EK +H ++ E+ +G
Sbjct: 332 RINGEKE-IPEMSTLEKPEPVSVTGSRD-------LQEGVEKCRDHNEAEMAD-FELFHG 382
Query: 329 SKEELPKQVELSGEEHHSNTEQMKVMEISSRNNECQVMKREDPLSVTVDATPQSKFLDAS 388
S +E + E++ H S + M +S ++ + + P++VT TP S+ +
Sbjct: 383 SHKEQSETSEVN--LHGSEKGFLSDMTVS-KDPSSEFNATDTPVTVT-PKTP-SRLKISE 437
Query: 389 GATTPEFMVVQTPATKECARISRKRKCCFDDVTVFPNDVMRQCIQDASDLVSKRRKVPRT 448
G T+P+F ++ TPA KE +R+SRKRKC DD + PN VM++ I+D+S L++KRR VP T
Sbjct: 438 GGTSPQFSIIPTPAAKESSRVSRKRKCLIDDEVIIPNKVMKEMIEDSSKLLAKRRNVPHT 497
Query: 449 VLAAWKASRISNLSQGFXXXXXXCISLELRAFLCQE-RLK------IPETAKSVELLEPE 501
+ R +N + F S +L++ CQ +LK P+ K E
Sbjct: 498 DCPERRTKRFANPFRSFLEPLIQYGSSDLQSLFCQPIKLKNWATTGTPKDTKIARHKEKS 557
Query: 502 -LPTVHK-----SLEKMAITSG---TPIGRSSQNMGIAPNTRTGISLEKMAVAPGTPTGR 552
L TV S ++ T TP + + + +S+E A + + T
Sbjct: 558 SLDTVRSPGVILSSDQTENTQEIMETPQAAALAGLKVTAGNSNVVSVEMGASSTTSGTAH 617
Query: 553 SSEKMVVAPETPTGGSSEKMVVAPETPTCRSPEKRAFAPDTPTGRSSEKMAVAPATPTGR 612
+E A ETP S V+APETP R+ E+ AP+TP SE++ +AP TP
Sbjct: 618 QTEN---AAETPVKPS----VIAPETPV-RTSEQTVIAPETPV--VSEQVEIAPETPVRE 667
Query: 613 S-SETMAIAPDTLTVKSSELIAMTI--ESPIFLSVPSRSFET 651
S S+ P T KS T E P V +R +T
Sbjct: 668 SMSKRFFKDPGTCYKKSRPASPFTSFEEHPSVYYVENRDLDT 709
Score = 291 (107.5 bits), Expect = 2.2e-71, Sum P(2) = 2.2e-71
Identities = 86/277 (31%), Positives = 133/277 (48%)
Query: 515 TSGTP----IGRSSQNMGIAPNTRTGISLEKMAVAPGTPTGRSSEKMVVAPETPTGGSSE 570
T+GTP I R + + G+ L + + +A T G+S
Sbjct: 541 TTGTPKDTKIARHKEKSSLDTVRSPGVILSSDQTENTQEIMETPQAAALAGLKVTAGNSN 600
Query: 571 KMVV--APETPTCRSPEKRAFAPDTPTGRSSEKMAVAPATPTGRSSETMAIAPDTLTVKS 628
+ V + T + + A +TP S +AP TP R+SE IAP+T V
Sbjct: 601 VVSVEMGASSTTSGTAHQTENAAETPVKPS----VIAPETPV-RTSEQTVIAPETPVV-- 653
Query: 629 SELIAMTIESPIFLSVPSRSFETPENAHSIAVETLADSYATPKKDLASSKDEDFDLIFMN 688
SE + + E+P+ S+ R F+ P + + + + ++ D D I MN
Sbjct: 654 SEQVEIAPETPVRESMSKRFFKDPGTCYKKSRPASPFTSFEEHPSVYYVENRDLDTILMN 713
Query: 689 EES-NFGEVDRQESYGFSARTRMVAKYLHRRFLCHKERREDEAIKLLPLLEGRTVKETAR 747
+E N E + +S+RTR VAK+L + FL +ER E+E + LL L GRT KE+AR
Sbjct: 714 DEQVNADERQDLQQETWSSRTRNVAKFLEKTFLEQREREEEEKVSLLQLCRGRTQKESAR 773
Query: 748 IFYEILVLQTKGIVNVKQDDAYGDILVVKAPWWDQSC 784
+FYE LVL+TKG V VKQ+ Y D+ +++ ++C
Sbjct: 774 LFYETLVLKTKGYVEVKQNHPYSDVFLMRVSRPQKAC 810
Score = 41 (19.5 bits), Expect = 3.6e-21, Sum P(2) = 3.6e-21
Identities = 17/60 (28%), Positives = 26/60 (43%)
Query: 331 EELPKQVELSGEEHHSNTEQ--MKVMEIS-------SRNNECQVMKREDPLSVTVDATPQ 381
E +EL E TE+ ++V+E SR+++ REDP S + PQ
Sbjct: 186 ESFAHDMELDAENVRDTTEEASVRVVEAEPLDSNEPSRDHQNASRHREDPESDDILLEPQ 245
>TAIR|locus:2181457 [details] [associations]
symbol:SYN4 "sister chromatid cohesion 1 protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000228 "nuclear
chromosome" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=ISM] [GO:0007062
"sister chromatid cohesion" evidence=ISS;IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0007067 "mitosis" evidence=RCA] [GO:0016246 "RNA interference"
evidence=RCA] InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824
Pfam:PF04825 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000228
GO:GO:0007062 eggNOG:NOG249424 KO:K06670 Gene3D:1.10.10.580
InterPro:IPR023093 EMBL:AF400129 IPI:IPI00542370 RefSeq:NP_197131.2
UniGene:At.10001 UniGene:At.67257 ProteinModelPortal:Q8W1Y0
PaxDb:Q8W1Y0 PRIDE:Q8W1Y0 EnsemblPlants:AT5G16270.1 GeneID:831487
KEGG:ath:AT5G16270 TAIR:At5g16270 HOGENOM:HOG000090768
InParanoid:Q8W1Y0 OMA:EYNQDAS PhylomeDB:Q8W1Y0
ProtClustDB:CLSN2690166 Genevestigator:Q8W1Y0 Uniprot:Q8W1Y0
Length = 1031
Score = 317 (116.6 bits), Expect = 8.5e-34, Sum P(2) = 8.5e-34
Identities = 109/361 (30%), Positives = 173/361 (47%)
Query: 1 MFYSRSLLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEELDVMTYRVLAYL 60
MFYS+ +L++KGPLG IW+AA+ ++L+K QV +T+I SVD IL E + R+ ++L
Sbjct: 1 MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPEAPI-ALRLSSHL 59
Query: 61 LLGLVRIYSKKVEYLFDDCNDAVVKINNFLVSEKSMKNLGNLCAPYCSITLPESFELDAF 120
LLG+VRIYS+KV YLFDDC++A++K+ S APY SITLPE+F+LD F
Sbjct: 60 LLGVVRIYSRKVNYLFDDCSEALLKVKQAFRSAAVDLPPEESTAPYHSITLPETFDLDDF 119
Query: 121 DL---EILEDISGENAVPL-EQITLKDGASAAAGKGHYSLSKYCCKEYAAWDDSFS-GDY 175
+L EI + ++ V EQITL+D YS S++ D+ F GD
Sbjct: 120 ELPDNEIFQGNYVDHHVSTKEQITLQDTMDGVV----YSTSQF------GLDERFGDGDT 169
Query: 176 SPADDIFSSHLMEIGMVVSATYSNLNANMENLQSNNDG-GVTEPIEPVGEKHQT--NEDM 232
S A + + V+ + + N + G+ + +E V E NE+
Sbjct: 170 SQAALDLDEAVFQDKDVIGSDDEGVPGIDHNAYLDAAAPGIKDSMEGVSEAMPMDFNEE- 228
Query: 233 KAAETAQSEKRLEKLQDNSFHGVEEESLDPIKLCGKDHRSDGEQTMVPDIAQLEKETCQA 292
+ + A + + +E Q G+ E P ++ + + D+ L E
Sbjct: 229 QVEDLAMNNEFIEDAQAPQTPGLVEV---PNSSSVREQMACDDHM---DVEDLNAEEGIK 282
Query: 293 TSKDINKNITMLQASTEKLCEHEVPQVCSGVEMCYGSKEELPKQVELSGEEHHSNTEQMK 352
+S ++N N M + + E+ P+ S V K ++ + V E E +
Sbjct: 283 SSGELNAN-EMPKRGEDLSSEYNAPE--SAVTPVEVDKSQIDENVNTQNEPEEERAEHVH 339
Query: 353 V 353
V
Sbjct: 340 V 340
Score = 138 (53.6 bits), Expect = 8.5e-34, Sum P(2) = 8.5e-34
Identities = 35/102 (34%), Positives = 57/102 (55%)
Query: 679 DEDFDLIFMNEESNFGEVDRQ-ESYGFSARTRMVAKYLHRRFLCHKERREDEAIKLLP-L 736
D++ D ++ + + R E+ G+S+RTR VAKYL F KE + + + L
Sbjct: 925 DDEVDEDHEEDDIQYDDETRLLENSGWSSRTRAVAKYLQTLF--DKETENGKNVLVADKL 982
Query: 737 LEGRTVKETARIFYEILVLQTKGIVNVKQDDAYGDILVVKAP 778
L G+T KE +R+F+E LVL+T+ + V+Q Y I++ P
Sbjct: 983 LAGKTRKEASRMFFETLVLKTRDYIQVEQGKPYESIIIKPRP 1024
Score = 92 (37.4 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 67/273 (24%), Positives = 107/273 (39%)
Query: 192 VVSATYSNLNANMENL-QSNNDGGVT----EP--IEPVGEKHQTNEDMKAAETAQSEKRL 244
V S S++ ME+ Q N+ G +P + P+ + N D A T +++
Sbjct: 340 VTSPCCSHITTEMEDPGQVMNEAGANVVPDKPDAVPPLETPGEENRDHFAIATEVNQET- 398
Query: 245 EKLQDNSFHGVEEESLDPIKLCGKDHRSD---GEQTMVPDIAQLEKETCQAT-SKDINKN 300
D+S G E+ P H +D G T D E A ++ + N
Sbjct: 399 ----DSSLQGDEQAYSRPDGQLNNAHETDEQLGNLTGFTDSDFPPPEKVLAVPNRQGDGN 454
Query: 301 ITMLQASTEKLCEHEVPQVCS---GVEMCYGSKEELPKQVELSGEEHHSNTEQMKVMEIS 357
M++++ +K E P C+ G G K + L+ E +S E + + I
Sbjct: 455 DFMVESTPDK----EDPGTCNDDAGNNNITGKKRTFTEST-LTAESLNS-VESVGL--IQ 506
Query: 358 SRNNECQVMKREDPLSVTVDATPQSKFLDASGATTPEFMVVQTPATKECAR-ISRKRKCC 416
S+ V +D LS + +S FL TP T + R + KRK
Sbjct: 507 SKRTADSVPDDDDLLSSIL--VGKSSFLKMR--PTPVLEPATTKRLRSAPRSTATKRKVL 562
Query: 417 FDDVTVFPNDVMRQCIQDASDLVSKRRKVPRTV 449
DD V D++RQ + + D+ R+K P TV
Sbjct: 563 MDDPMVLHGDIIRQQLTNTEDIRRVRKKAPCTV 595
Score = 48 (22.0 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 30/133 (22%), Positives = 52/133 (39%)
Query: 230 EDMKAAETAQSEKRLEKLQDNSFHGVEEESLDPIKLCGKDHRSDGEQTMVPDIAQLEKET 289
ED + + TA E + E+ D H + E P G H E+ + +L+ +
Sbjct: 652 EDNECSVTAVEENKTEESSDPQAHPNDCEE-QP----GTAHTHPQEEQTINQQEELKDDN 706
Query: 290 CQATSKDINKNITMLQASTEKLCEHEVPQVCSGVEMCYGSKEELPKQVELSGEEHHSNTE 349
A D+ +L+ E + V V S+E+L + +L EE H N +
Sbjct: 707 ELAEKSDLE----VLKEGNGAADEVNLV-VIDDVSQI-PSEEKLDRVEDLQVEESHENHD 760
Query: 350 QMKVMEISSRNNE 362
++ + NE
Sbjct: 761 GEGGQDVCADPNE 773
>TAIR|locus:2097548 [details] [associations]
symbol:SYN3 "AT3G59550" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0000798 "nuclear cohesin complex"
evidence=ISS] [GO:0007067 "mitosis" evidence=IEP] [GO:0005730
"nucleolus" evidence=IDA] [GO:0009555 "pollen development"
evidence=IMP] [GO:0009561 "megagametogenesis" evidence=IMP]
[GO:0000280 "nuclear division" evidence=RCA] [GO:0000911
"cytokinesis by cell plate formation" evidence=RCA] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] [GO:0006275
"regulation of DNA replication" evidence=RCA] [GO:0010389
"regulation of G2/M transition of mitotic cell cycle" evidence=RCA]
[GO:0042023 "DNA endoreduplication" evidence=RCA] [GO:0051225
"spindle assembly" evidence=RCA] InterPro:IPR006909
InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0007059 GO:GO:0005730 GO:GO:0051301
GO:GO:0007067 GO:GO:0009555 GO:GO:0009561 EMBL:AL138659
eggNOG:NOG249424 KO:K06670 Gene3D:1.10.10.580 InterPro:IPR023093
GO:GO:0000798 EMBL:AF281155 EMBL:AF400128 IPI:IPI00518598
IPI:IPI00541511 IPI:IPI00548487 PIR:T49296 RefSeq:NP_191514.1
UniGene:At.1119 ProteinModelPortal:Q9FQ19 SMR:Q9FQ19 PaxDb:Q9FQ19
PRIDE:Q9FQ19 EnsemblPlants:AT3G59550.1 GeneID:825124
KEGG:ath:AT3G59550 TAIR:At3g59550 HOGENOM:HOG000090294
InParanoid:Q9FQ19 OMA:TVWCAAH PhylomeDB:Q9FQ19
ProtClustDB:CLSN2915554 Genevestigator:Q9FQ19 GermOnline:AT3G59550
Uniprot:Q9FQ19
Length = 693
Score = 265 (98.3 bits), Expect = 2.0e-28, Sum P(3) = 2.0e-28
Identities = 64/145 (44%), Positives = 89/145 (61%)
Query: 1 MFYSRSLLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEELDVMTYRVLAYL 60
MFYS +LL+RKGPLG +W AA+ +RLKK+Q NIP +VD I+ E+ + R ++L
Sbjct: 1 MFYSHTLLARKGPLGTVWCAAHVHQRLKKSQYTSINIPDTVDNIMFPEVP-LALRTSSHL 59
Query: 61 LLGLVRIYSKKVEYLFDDCNDAVVKINNFLVSEKSMKNLGNLCAPYCSITLPESFELDAF 120
L+G+VRIYSKKV+YL++D N + VS + AP S+TLP++ LD F
Sbjct: 60 LVGVVRIYSKKVDYLYNDWNLLNTWVAKAFVSTQVNLPEDARQAPPESVTLPQALNLDEF 119
Query: 121 DLEI-LEDISGENAVPLEQ-ITLKD 143
DLE D+ +N E+ ITL D
Sbjct: 120 DLEDDTLDMEFDNHTRSEEDITLTD 144
Score = 137 (53.3 bits), Expect = 2.0e-28, Sum P(3) = 2.0e-28
Identities = 38/135 (28%), Positives = 66/135 (48%)
Query: 646 SRSFETPENAHSIAVETLADSYATPKKDLASSKDEDFDLIFMNEESNFGEVDRQESYGFS 705
+ S+ T E + S E L ++ DE+ + + S G Q+S +
Sbjct: 552 TESYRT-EPSTSTVPEDLPGQRNLGLSPVSERTDEELYFLEVGGNSPVGTPASQDSAALT 610
Query: 706 ARTRMVAKYLHRRFLCHKERREDEA--IKLLPLLEGRTVKETARIFYEILVLQTKGIVNV 763
R R +A+YL +R + + L +L G+T K AR+F+E LVL+++G++++
Sbjct: 611 GRARALAQYLKQRSSSSPTTSSHPSGDLSLSEILAGKTRKLAARMFFETLVLKSRGLIDM 670
Query: 764 KQDDAYGDILVVKAP 778
+QD YGDI + P
Sbjct: 671 QQDRPYGDIALKLMP 685
Score = 131 (51.2 bits), Expect = 5.7e-28, Sum P(2) = 5.7e-28
Identities = 91/366 (24%), Positives = 150/366 (40%)
Query: 392 TPEFMVVQTPATKECARISRKRKCCFDDVTVFPNDVMRQCIQDASDLVSKRRKVPRTVLA 451
+P+ +V+Q + R +RKRK FD VTV N + + ++D SD + KR+K+P + L
Sbjct: 337 SPQ-LVLQPSPPPQPQRRARKRKN-FDGVTVLTNKNISERLKDPSDTLRKRKKMPSSKLK 394
Query: 452 AWKASRISNLSQGFXXXXXXCISLELRAFLCQERLKI-PETAKSVELLEPELPTVHKSLE 510
W+ + S Q F S +LR ++ + P A S E L PE +V + E
Sbjct: 395 FWRMNNQSRKDQNFNEPLFTGFSDDLRNVFEKDYVASKPHLAVSDETL-PEPASVSPTRE 453
Query: 511 -KMAITSGTPIGRSSQ---NMGIAPNTRTGISLEKMAVAPGTPTGRSSEKMVVAPETPTG 566
++ I +PI S+ + ++P +T E + + G P +E + ++P
Sbjct: 454 AEVEINPVSPIPDSTNPDSTVQLSPAQQT----EDVLDSAG-PRPAHAESVATEAQSPRT 508
Query: 567 GSSEKMVVAPETPTCRSPEKRAFAPDTPTGRSSEKMAVAPATPTGR-SSETMAIAPDTLT 625
++ M + R + P P RSS T +G +E+ P T T
Sbjct: 509 FDNDDMGIEH----LRDGGFPVYMPSPPP-RSSPFRTDDFTTQSGNWETESYRTEPSTST 563
Query: 626 VKS----------SELIAMTIESPIFLSVPSRS-FETPENAHSIAVETLADSYATPKKDL 674
V S + T E FL V S TP + S A+ A + A K
Sbjct: 564 VPEDLPGQRNLGLSPVSERTDEELYFLEVGGNSPVGTPASQDSAALTGRARALAQYLKQR 623
Query: 675 ASSKDEDFDLIFMNEESNFGEVDRQESYGFSARTRMVAKYLHRRFLCHKERRE---DEAI 731
+SS + + + E+ ++ +AR L R L ++ D A+
Sbjct: 624 SSSSPTTSS--HPSGDLSLSEILAGKTRKLAARMFFETLVLKSRGLIDMQQDRPYGDIAL 681
Query: 732 KLLPLL 737
KL+P L
Sbjct: 682 KLMPAL 687
Score = 42 (19.8 bits), Expect = 2.0e-28, Sum P(3) = 2.0e-28
Identities = 21/76 (27%), Positives = 28/76 (36%)
Query: 552 RSSEKMVVAPETPTGGSSEKMVVAPETPTCRSPEKRAFAPDTPTGRSSEKMAVAPATPTG 611
RS E + + + PTG V E S P R + ++ V A TG
Sbjct: 135 RSEEDITLTDQIPTGIDPYVAVTFDEDIISESIPMDVDQSTEPVSRHTGEIDVETAHETG 194
Query: 612 RSSETMA--IAPDTLT 625
+E IA DT T
Sbjct: 195 PDNEPRDSNIAFDTGT 210
Score = 41 (19.5 bits), Expect = 1.5e-18, Sum P(3) = 1.5e-18
Identities = 10/45 (22%), Positives = 20/45 (44%)
Query: 655 AHSIAVETLADSYATPKKDLASSKDEDFDLIFMNEESNFGEVDRQ 699
AH ++ T S+A ++D+ + E D +E +D +
Sbjct: 260 AHDLS-PTSHPSFAAQQQDVRVERTESLDETLNEKEPTIPSIDEE 303
>ZFIN|ZDB-GENE-030131-994 [details] [associations]
symbol:rad21a "RAD21 homolog (S. pombe) a"
species:7955 "Danio rerio" [GO:0000228 "nuclear chromosome"
evidence=IEA] [GO:0007064 "mitotic sister chromatid cohesion"
evidence=IMP] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IMP]
[GO:0043565 "sequence-specific DNA binding" evidence=IDA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IMP] InterPro:IPR006909 InterPro:IPR006910
Pfam:PF04824 Pfam:PF04825 ZFIN:ZDB-GENE-030131-994 GO:GO:0043565
GO:GO:0006357 GO:GO:0043280 GO:GO:0000228 GO:GO:0007064
HOVERGEN:HBG059956 KO:K06670 Gene3D:1.10.10.580 InterPro:IPR023093
EMBL:BC045311 IPI:IPI01005011 RefSeq:NP_955889.1 UniGene:Dr.94731
ProteinModelPortal:Q7ZW30 STRING:Q7ZW30 GeneID:322275
KEGG:dre:322275 CTD:322275 InParanoid:Q7ZW30 NextBio:20807742
ArrayExpress:Q7ZW30 Uniprot:Q7ZW30
Length = 643
Score = 247 (92.0 bits), Expect = 1.6e-27, Sum P(3) = 1.6e-27
Identities = 62/147 (42%), Positives = 88/147 (59%)
Query: 1 MFYSRSLLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEELDVMTYRVLAYL 60
MFY+ +LS++GPL IW+AA+ K+L KA VFE N+ SSV+ I+ ++ M R +L
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVK-MALRTSGHL 59
Query: 61 LLGLVRIYSKKVEYLFDDCNDAVVKINNFLVSEKSMKNL--GNLCAPYCSITLPESFELD 118
LLG+VRIY +K +YL DCN+A +KI + + +L N A Y +ITLPE F D
Sbjct: 60 LLGVVRIYHRKAKYLLADCNEAFIKIK--MAFRPGVVDLPEDNREAAYNAITLPEEFH-D 116
Query: 119 AFD--LEILEDISGENAVPLEQITLKD 143
FD L L+DI L Q +++
Sbjct: 117 -FDQPLPDLDDIDVAQQFTLNQSRVEE 142
Score = 118 (46.6 bits), Expect = 1.6e-27, Sum P(3) = 1.6e-27
Identities = 45/181 (24%), Positives = 77/181 (42%)
Query: 600 EKMAVAPATPTGRSSETMAIAPDTLTVKSSELIAMTIESPIFLSVPSRSFETPENAHSIA 659
E M P+ G +++ + ++ T++ P+ SV S E P+
Sbjct: 464 ESMMPPPSRQRGLKRKSLETLEKDAVLPPMGVLEQTLQ-PLDQSVLSHQLEMPQ-VELPP 521
Query: 660 VETLADSYATPKKDLASSKDEDFDLIFMNEESNFGEV-DR-QESYGFSARTRMVAKYLHR 717
+T S P+ DL K +D D +EE G+ D+ QE ++ RT+ + L R
Sbjct: 522 EDTTNLSRLIPELDLLDEKSKDKDKDDSDEEGEEGQGGDQDQEERRWNKRTQQMLHGLQR 581
Query: 718 RFLCHKERREDEAIKLLPLLEGRTVKETARIFYEILVLQTKGIVNVKQDDAYGDILVVKA 777
+ ++I LL L K+ A FY LVL+ + +++ Q + Y DI+
Sbjct: 582 VVA----KTGAQSIGLLELCRNNNKKQAAAKFYSFLVLKKQQAIDLTQTEPYSDIIAAPG 637
Query: 778 P 778
P
Sbjct: 638 P 638
Score = 70 (29.7 bits), Expect = 1.6e-27, Sum P(3) = 1.6e-27
Identities = 23/86 (26%), Positives = 35/86 (40%)
Query: 370 DPLSVTVDATPQSKFLDASGATTPEFMVVQTPATKECARISRKRKCCFDDVTVFPNDVMR 429
+PL T D T Q++ F + T + + RKRK D + + +R
Sbjct: 280 EPLPNTTDQTDQTEQTTLVPNEDEAFALEPIDITVKETKAKRKRKLIVDSLKELDSKTIR 339
Query: 430 QCIQDASDLVSKRRKVPRTV-LAAWK 454
+ D SD+V+ P T L WK
Sbjct: 340 AQLSDYSDIVTTLDLAPPTKKLMMWK 365
Score = 42 (19.8 bits), Expect = 8.1e-17, Sum P(2) = 8.1e-17
Identities = 23/91 (25%), Positives = 38/91 (41%)
Query: 223 GEKHQTNEDMKAAETAQ---SEKRLEKLQDNSF---HGVEEESLDPIKLCGKDHRSDGEQ 276
G + +E M + Q K LE L+ ++ GV E++L P+ H+ + Q
Sbjct: 457 GSRTALDESMMPPPSRQRGLKRKSLETLEKDAVLPPMGVLEQTLQPLDQSVLSHQLEMPQ 516
Query: 277 TMVP--DIAQL-----EKETCQATSKDINKN 300
+P D L E + SKD +K+
Sbjct: 517 VELPPEDTTNLSRLIPELDLLDEKSKDKDKD 547
Score = 40 (19.1 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 10/55 (18%), Positives = 25/55 (45%)
Query: 224 EKHQTNEDMKAAETAQSEKRLEKLQDNSFHGVEE-------ESLDPIKLCGKDHR 271
+ + E+ + + Q E+R K HG++ +S+ ++LC +++
Sbjct: 548 DSDEEGEEGQGGDQDQEERRWNKRTQQMLHGLQRVVAKTGAQSIGLLELCRNNNK 602
>UNIPROTKB|O60216 [details] [associations]
symbol:RAD21 "Double-strand-break repair protein rad21
homolog" species:9606 "Homo sapiens" [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0007059 "chromosome segregation"
evidence=IEA] [GO:0051301 "cell division" evidence=IEA] [GO:0034991
"nuclear meiotic cohesin complex" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0071168 "protein localization to
chromatin" evidence=IMP] [GO:0006302 "double-strand break repair"
evidence=TAS] [GO:0006310 "DNA recombination" evidence=TAS]
[GO:0007131 "reciprocal meiotic recombination" evidence=TAS]
[GO:0000087 "M phase of mitotic cell cycle" evidence=TAS]
[GO:0000236 "mitotic prometaphase" evidence=TAS] [GO:0000278
"mitotic cell cycle" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0007091 "metaphase/anaphase transition of mitotic
cell cycle" evidence=TAS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0008278 "cohesin
complex" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR006909
InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825 GO:GO:0006915
Reactome:REACT_115566 GO:GO:0007059 EMBL:CH471060 GO:GO:0005654
Reactome:REACT_21300 GO:GO:0000775 GO:GO:0051301 GO:GO:0006357
Reactome:REACT_111183 GO:GO:0006302 GO:GO:0007091 GO:GO:0007131
GO:GO:0000228 GO:GO:0000236 GO:GO:0008278 Orphanet:199
GO:GO:0071168 CTD:5885 eggNOG:NOG249424 HOGENOM:HOG000233800
HOVERGEN:HBG059956 KO:K06670 OMA:VPREEQQ OrthoDB:EOG47PX5K
Gene3D:1.10.10.580 InterPro:IPR023093 EMBL:X98294 EMBL:D38551
EMBL:AY675320 EMBL:AK289505 EMBL:BC050381 IPI:IPI00006715
RefSeq:NP_006256.1 UniGene:Hs.81848 ProteinModelPortal:O60216
SMR:O60216 DIP:DIP-29201N IntAct:O60216 MINT:MINT-2999858
STRING:O60216 PhosphoSite:O60216 PaxDb:O60216 PeptideAtlas:O60216
PRIDE:O60216 Ensembl:ENST00000297338 GeneID:5885 KEGG:hsa:5885
UCSC:uc003yod.3 GeneCards:GC08M117858 HGNC:HGNC:9811 HPA:CAB022065
HPA:HPA020044 MIM:606462 MIM:614701 neXtProt:NX_O60216
PharmGKB:PA34170 InParanoid:O60216 PhylomeDB:O60216
BioCyc:MetaCyc:ENSG00000164754-MONOMER ChiTaRS:RAD21
GenomeRNAi:5885 NextBio:22884 PMAP-CutDB:O60216 ArrayExpress:O60216
Bgee:O60216 CleanEx:HS_RAD21 Genevestigator:O60216
GermOnline:ENSG00000164754 Uniprot:O60216
Length = 631
Score = 255 (94.8 bits), Expect = 4.0e-27, Sum P(4) = 4.0e-27
Identities = 80/217 (36%), Positives = 116/217 (53%)
Query: 1 MFYSRSLLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEELDVMTYRVLAYL 60
MFY+ +LS++GPL IW+AA+ K+L KA VFE N+ SSV+ I+ ++ M R +L
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVK-MALRTSGHL 59
Query: 61 LLGLVRIYSKKVEYLFDDCNDAVVKINNFLVSEKSMKNLG--NLCAPYCSITLPESFELD 118
LLG+VRIY +K +YL DCN+A +KI + + +L N A Y +ITLPE F D
Sbjct: 60 LLGVVRIYHRKAKYLLADCNEAFIKIK--MAFRPGVVDLPEENREAAYNAITLPEEFH-D 116
Query: 119 AFD--LEILEDISGENAVPLEQITLKDGASAAAGKGHYSLSKYCCKEYAAWDDSFSGDYS 176
FD L L+DI L Q +++ + G+ S+ + ++ F GD+
Sbjct: 117 -FDQPLPDLDDIDVAQQFSLNQSRVEE-ITMREEVGNISILQ---------ENDF-GDFG 164
Query: 177 PAD-DIF--SSHLMEIGMVVSATYSNLNANMENLQSN 210
D +I S + M+VS T SNL E SN
Sbjct: 165 MDDREIMREGSAFEDDDMLVSTTTSNLLLESEQSTSN 201
Score = 114 (45.2 bits), Expect = 4.0e-27, Sum P(4) = 4.0e-27
Identities = 44/179 (24%), Positives = 82/179 (45%)
Query: 600 EKMAVAPATPTGRSSETMAIAPDTLTVKSSELIAMTIESPIFLSVPSRSFETPENAHSIA 659
++ A+ P P G + I P+ + + ++ M I P+ L P PE +I
Sbjct: 464 DESAMPPPPPQGVKRKAGQIDPEPV-MPPQQVEQMEIP-PVEL--P------PEEPPNIC 513
Query: 660 VETLADSYATPKKDLASSKDEDFDLIFMNEESNFGEVDRQESYGFSARTRMVAKYLHRRF 719
+ + + P+K+ K+++ D +E+++ G+ D QE ++ RT+ + L R
Sbjct: 514 -QLIPELELLPEKEKEKEKEKEDDEEEEDEDASGGDQD-QEERRWNKRTQQMLHGLQRAL 571
Query: 720 LCHKERREDEAIKLLPLLEGRTVKETARIFYEILVLQTKGIVNVKQDDAYGDILVVKAP 778
+ E+I LL L K+ A FY LVL+ + + + Q++ Y DI+ P
Sbjct: 572 A----KTGAESISLLELCRNTNRKQAAAKFYSFLVLKKQQAIELTQEEPYSDIIATPGP 626
Score = 60 (26.2 bits), Expect = 4.0e-27, Sum P(4) = 4.0e-27
Identities = 18/52 (34%), Positives = 24/52 (46%)
Query: 404 KECARISRKRKCCFDDVTVFPNDVMRQCIQDASDLVSKRRKVPRTV-LAAWK 454
KE + RKRK D V + +R + D SD+V+ P T L WK
Sbjct: 314 KE-TKAKRKRKLIVDSVKELDSKTIRAQLSDYSDIVTTLDLAPPTKKLMMWK 364
Score = 56 (24.8 bits), Expect = 5.3e-19, Sum P(3) = 5.3e-19
Identities = 15/84 (17%), Positives = 34/84 (40%)
Query: 220 EPVGEKHQTNEDMKAAETAQSEKRLEKLQDNSFHGVEE-------ESLDPIKLCGKDHRS 272
E ++ + +ED + Q E+R K HG++ ES+ ++LC +R
Sbjct: 532 EKEDDEEEEDEDASGGDQDQEERRWNKRTQQMLHGLQRALAKTGAESISLLELCRNTNRK 591
Query: 273 DGEQTMVPDIAQLEKETCQATSKD 296
+ +++ + T ++
Sbjct: 592 QAAAKFYSFLVLKKQQAIELTQEE 615
Score = 45 (20.9 bits), Expect = 7.1e-18, Sum P(3) = 7.1e-18
Identities = 22/102 (21%), Positives = 41/102 (40%)
Query: 218 PIEPVGEKHQTNEDMKAAETAQSEKRLEKLQDNSFHGVEEESLDPIKLCGKDHRS---DG 274
P E ++HQ + + + + E + + S ++E ++ P G ++ D
Sbjct: 426 PREDQQQQHQQRDVIDEPIIEEPSRLQESVMEASRTNIDESAMPPPPPQGVKRKAGQIDP 485
Query: 275 EQTMVPD-IAQLEKETCQATSKDINKNITMLQASTEKLCEHE 315
E M P + Q+E + ++ NI L E L E E
Sbjct: 486 EPVMPPQQVEQMEIPPVELPPEE-PPNICQLIPELELLPEKE 526
Score = 40 (19.1 bits), Expect = 4.0e-27, Sum P(4) = 4.0e-27
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 205 ENLQSNNDGGV 215
+ L SNNDGG+
Sbjct: 231 DKLISNNDGGI 241
>MGI|MGI:108016 [details] [associations]
symbol:Rad21 "RAD21 homolog (S. pombe)" species:10090 "Mus
musculus" [GO:0000228 "nuclear chromosome" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0007059 "chromosome segregation" evidence=IEA]
[GO:0007067 "mitosis" evidence=IEA] [GO:0008278 "cohesin complex"
evidence=IDA] [GO:0034991 "nuclear meiotic cohesin complex"
evidence=IDA] [GO:0051301 "cell division" evidence=IEA] [GO:0071168
"protein localization to chromatin" evidence=ISO]
InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825
MGI:MGI:108016 GO:GO:0006915 GO:GO:0007059 GO:GO:0005654
GO:GO:0000775 GO:GO:0051301 GO:GO:0007067 GO:GO:0006281
GO:GO:0006357 Reactome:REACT_118161 Reactome:REACT_120463
Reactome:REACT_75800 GO:GO:0071168 CTD:5885 eggNOG:NOG249424
GeneTree:ENSGT00390000011606 HOGENOM:HOG000233800
HOVERGEN:HBG059956 KO:K06670 OMA:VPREEQQ OrthoDB:EOG47PX5K
Gene3D:1.10.10.580 InterPro:IPR023093 ChiTaRS:RAD21 EMBL:D49429
EMBL:X98293 EMBL:AF332086 EMBL:AF332085 EMBL:AK004746 EMBL:AK163992
EMBL:BC043032 IPI:IPI00329840 PIR:JC4248 RefSeq:NP_033035.3
UniGene:Mm.182628 ProteinModelPortal:Q61550 SMR:Q61550
DIP:DIP-56655N IntAct:Q61550 STRING:Q61550 PhosphoSite:Q61550
PaxDb:Q61550 PRIDE:Q61550 Ensembl:ENSMUST00000022927 GeneID:19357
KEGG:mmu:19357 InParanoid:Q810A8 NextBio:296405 Bgee:Q61550
CleanEx:MM_RAD21 Genevestigator:Q61550
GermOnline:ENSMUSG00000022314 GO:GO:0034991 Uniprot:Q61550
Length = 635
Score = 252 (93.8 bits), Expect = 4.6e-27, Sum P(4) = 4.6e-27
Identities = 72/218 (33%), Positives = 115/218 (52%)
Query: 1 MFYSRSLLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEELDVMTYRVLAYL 60
MFY+ +LS++GPL IW+AA+ K+L KA VFE N+ SSV+ I+ ++ M R +L
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVK-MALRTSGHL 59
Query: 61 LLGLVRIYSKKVEYLFDDCNDAVVKINNFLVSEKSMKNLG--NLCAPYCSITLPESFE-- 116
LLG+VRIY +K +YL DCN+A +KI + + +L N A Y +ITLPE F
Sbjct: 60 LLGVVRIYHRKAKYLLADCNEAFIKIK--MAFRPGVVDLPEENREAAYNAITLPEEFHDF 117
Query: 117 ----LDAFDLEILEDISGENAVPLEQITLKD--GASAAAGKGHYSLSKYCCKEYAAWDDS 170
D D+++ + S N +E+IT+++ G + + + +E +
Sbjct: 118 DQPLPDLDDIDVAQQFS-LNQSRVEEITMREEVGNISILQENDFGDFGMDDREIMREGSA 176
Query: 171 FSGDYSPADDIFSSHLMEIGMVVSATYSNLNANMENLQ 208
F D D + S+ + + + SNLN M +L+
Sbjct: 177 FEDD----DMLVSTSASNLLLEPEQSTSNLNEKMNHLE 210
Score = 115 (45.5 bits), Expect = 4.6e-27, Sum P(4) = 4.6e-27
Identities = 44/179 (24%), Positives = 82/179 (45%)
Query: 600 EKMAVAPATPTGRSSETMAIAPDTLTVKSSELIAMTIESPIFLSVPSRSFETPENAHSIA 659
E+ A+ P P G + I P+ ++ ++ M I P+ L P PE +I
Sbjct: 468 EESAMPPPPPQGVKRKAGQIDPEP-SIPPQQVEQMEIP-PVEL--P------PEEPPNIC 517
Query: 660 VETLADSYATPKKDLASSKDEDFDLIFMNEESNFGEVDRQESYGFSARTRMVAKYLHRRF 719
+ + + P+K+ K+++ + +E+++ G+ D QE ++ RT+ + L R
Sbjct: 518 -QLIPELELLPEKEKEKEKEKEEEEEEEDEDASGGDQD-QEERRWNKRTQQMLHGLQRAL 575
Query: 720 LCHKERREDEAIKLLPLLEGRTVKETARIFYEILVLQTKGIVNVKQDDAYGDILVVKAP 778
+ E+I LL L K+ A FY LVL+ + + + Q++ Y DI+ P
Sbjct: 576 A----KTGAESISLLELCRNTNRKQAAAKFYSFLVLKKQQAIELTQEEPYSDIIATPGP 630
Score = 60 (26.2 bits), Expect = 4.6e-27, Sum P(4) = 4.6e-27
Identities = 18/52 (34%), Positives = 24/52 (46%)
Query: 404 KECARISRKRKCCFDDVTVFPNDVMRQCIQDASDLVSKRRKVPRTV-LAAWK 454
KE + RKRK D V + +R + D SD+V+ P T L WK
Sbjct: 314 KE-TKAKRKRKLIVDSVKELDSKTIRAQLSDYSDIVTTLDLAPPTKKLMMWK 364
Score = 58 (25.5 bits), Expect = 4.6e-19, Sum P(2) = 4.6e-19
Identities = 15/80 (18%), Positives = 33/80 (41%)
Query: 224 EKHQTNEDMKAAETAQSEKRLEKLQDNSFHGVEE-------ESLDPIKLCGKDHRSDGEQ 276
E+ + +ED + Q E+R K HG++ ES+ ++LC +R
Sbjct: 540 EEEEEDEDASGGDQDQEERRWNKRTQQMLHGLQRALAKTGAESISLLELCRNTNRKQAAA 599
Query: 277 TMVPDIAQLEKETCQATSKD 296
+ +++ + T ++
Sbjct: 600 KFYSFLVLKKQQAIELTQEE 619
Score = 42 (19.8 bits), Expect = 4.6e-27, Sum P(4) = 4.6e-27
Identities = 15/61 (24%), Positives = 30/61 (49%)
Query: 205 ENLQSNNDGGVTEPIEPVGEKHQTNEDMKAAETAQSEKRLEKLQDNSFHGVEE-ESLDPI 263
+ L SNNDGG+ + + E M + A + +++ + S G + +S+DP+
Sbjct: 231 DKLISNNDGGIFDDPPALSEAGV----MLPEQPAHDD--MDEDDNGSLGGPDSPDSVDPV 284
Query: 264 K 264
+
Sbjct: 285 E 285
>UNIPROTKB|Q3SWX9 [details] [associations]
symbol:RAD21 "Double-strand-break repair protein rad21
homolog" species:9913 "Bos taurus" [GO:0071168 "protein
localization to chromatin" evidence=ISS] [GO:0000775 "chromosome,
centromeric region" evidence=IEA] [GO:0034991 "nuclear meiotic
cohesin complex" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0051301 "cell division" evidence=IEA] [GO:0007067 "mitosis"
evidence=IEA] [GO:0007059 "chromosome segregation" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] InterPro:IPR006909 InterPro:IPR006910
Pfam:PF04824 Pfam:PF04825 GO:GO:0006915 GO:GO:0007059 GO:GO:0000775
GO:GO:0051301 GO:GO:0007067 GO:GO:0006281 GO:GO:0006357
GO:GO:0000228 GO:GO:0071168 EMBL:BC104612 IPI:IPI00708412
RefSeq:NP_001029889.1 UniGene:Bt.15668 ProteinModelPortal:Q3SWX9
STRING:Q3SWX9 PRIDE:Q3SWX9 Ensembl:ENSBTAT00000009607 GeneID:540966
KEGG:bta:540966 CTD:5885 eggNOG:NOG249424
GeneTree:ENSGT00390000011606 HOGENOM:HOG000233800
HOVERGEN:HBG059956 InParanoid:Q3SWX9 KO:K06670 OMA:VPREEQQ
OrthoDB:EOG47PX5K NextBio:20878937 Gene3D:1.10.10.580
InterPro:IPR023093 Uniprot:Q3SWX9
Length = 630
Score = 248 (92.4 bits), Expect = 9.7e-27, Sum P(4) = 9.7e-27
Identities = 60/151 (39%), Positives = 91/151 (60%)
Query: 1 MFYSRSLLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEELDVMTYRVLAYL 60
MFY+ +LS++GPL IW+AA+ K+L KA VFE N+ SSV+ I+ ++ M R +L
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVK-MALRTSGHL 59
Query: 61 LLGLVRIYSKKVEYLFDDCNDAVVKINNFLVSEKSMKNLG--NLCAPYCSITLPESFE-- 116
LLG+VRIY +K +YL DCN+A +KI + + +L N A Y +ITLPE F
Sbjct: 60 LLGVVRIYHRKAKYLLADCNEAFIKIK--MAFRPGVVDLPEENREAAYNAITLPEEFHDF 117
Query: 117 ----LDAFDLEILEDISGENAVPLEQITLKD 143
D D+++ + S N +E+IT+++
Sbjct: 118 DQPLPDLDDIDVAQQFS-LNQSRVEEITMRE 147
Score = 118 (46.6 bits), Expect = 9.7e-27, Sum P(4) = 9.7e-27
Identities = 46/185 (24%), Positives = 85/185 (45%)
Query: 595 TGRSS-EKMAVAPATPTGRSSETMAIAPDTLTVKSSELIAMTIESPIFLSVPSRSFETPE 653
T R++ ++ A+ P P G + I P+ + + + M I P+ L P PE
Sbjct: 457 TSRTNLDESAMPPPPPQGVKRKAGQIDPEPM-IPPQQAEQMEIP-PVEL--P------PE 506
Query: 654 NAHSIAVETLADSYATPKKDLASSKDEDFDLIFMNEESNFGEVDRQESYGFSARTRMVAK 713
+I + + + P+K+ K+++ D +E+++ G+ D QE ++ RT+ +
Sbjct: 507 EPPNIC-QLIPELELLPEKEKEKEKEKEDDEEEEDEDASGGDQD-QEERRWNKRTQQMLH 564
Query: 714 YLHRRFLCHKERREDEAIKLLPLLEGRTVKETARIFYEILVLQTKGIVNVKQDDAYGDIL 773
L R + E+I LL L K+ A FY LVL+ + + + Q++ Y DI+
Sbjct: 565 GLQRALA----KTGAESISLLELCRNTNRKQAAAKFYSFLVLKKQQAIELTQEEPYSDII 620
Query: 774 VVKAP 778
P
Sbjct: 621 ATPGP 625
Score = 60 (26.2 bits), Expect = 9.7e-27, Sum P(4) = 9.7e-27
Identities = 18/52 (34%), Positives = 24/52 (46%)
Query: 404 KECARISRKRKCCFDDVTVFPNDVMRQCIQDASDLVSKRRKVPRTV-LAAWK 454
KE + RKRK D V + +R + D SD+V+ P T L WK
Sbjct: 314 KE-TKAKRKRKLIVDSVKELDSKTIRAQLSDYSDIVTTLDLAPPTKKLMMWK 364
Score = 56 (24.8 bits), Expect = 3.2e-18, Sum P(3) = 3.2e-18
Identities = 15/84 (17%), Positives = 34/84 (40%)
Query: 220 EPVGEKHQTNEDMKAAETAQSEKRLEKLQDNSFHGVEE-------ESLDPIKLCGKDHRS 272
E ++ + +ED + Q E+R K HG++ ES+ ++LC +R
Sbjct: 531 EKEDDEEEEDEDASGGDQDQEERRWNKRTQQMLHGLQRALAKTGAESISLLELCRNTNRK 590
Query: 273 DGEQTMVPDIAQLEKETCQATSKD 296
+ +++ + T ++
Sbjct: 591 QAAAKFYSFLVLKKQQAIELTQEE 614
Score = 45 (20.9 bits), Expect = 2.8e-17, Sum P(2) = 2.8e-17
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 198 SNLNANMENLQSNNDGGVTEPIEPVGEKHQTNE-DMKAAETAQSEKRLE 245
S L +ME ++N D P P G K + + D + Q +++E
Sbjct: 449 SRLQESMETSRTNLDESAMPPPPPQGVKRKAGQIDPEPMIPPQQAEQME 497
Score = 40 (19.1 bits), Expect = 9.7e-27, Sum P(4) = 9.7e-27
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 205 ENLQSNNDGGV 215
+ L SNNDGG+
Sbjct: 231 DKLISNNDGGI 241
>RGD|1594529 [details] [associations]
symbol:Rad21 "RAD21 homolog (S. pombe)" species:10116 "Rattus
norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA;ISO] [GO:0008278 "cohesin complex" evidence=ISO]
[GO:0034991 "nuclear meiotic cohesin complex" evidence=IEA;ISO]
[GO:0071168 "protein localization to chromatin" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR006909
InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825 RGD:1594529
GO:GO:0006357 GO:GO:0000228 EMBL:CH473950 GO:GO:0071168 CTD:5885
eggNOG:NOG249424 GeneTree:ENSGT00390000011606 HOGENOM:HOG000233800
HOVERGEN:HBG059956 KO:K06670 OMA:VPREEQQ OrthoDB:EOG47PX5K
Gene3D:1.10.10.580 InterPro:IPR023093 EMBL:BC099200 IPI:IPI00360494
RefSeq:NP_001020872.1 UniGene:Rn.3991 STRING:Q4KLH7
Ensembl:ENSRNOT00000006209 GeneID:314949 KEGG:rno:314949
UCSC:RGD:1594529 InParanoid:Q4KLH7 NextBio:668408
Genevestigator:Q4KLH7 Uniprot:Q4KLH7
Length = 635
Score = 250 (93.1 bits), Expect = 9.9e-27, Sum P(4) = 9.9e-27
Identities = 79/217 (36%), Positives = 116/217 (53%)
Query: 1 MFYSRSLLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEELDVMTYRVLAYL 60
MFY+ +LS++GPL IW+AA+ K+L KA VFE N+ SSV+ I+ ++ M R +L
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVK-MALRTSGHL 59
Query: 61 LLGLVRIYSKKVEYLFDDCNDAVVKINNFLVSEKSMKNLG--NLCAPYCSITLPESFELD 118
LLG+VRIY +K +YL DCN+A +KI + + +L N A Y +ITLPE F D
Sbjct: 60 LLGVVRIYHRKAKYLLADCNEAFIKIK--MAFRPGVVDLPEENREAAYNAITLPEEFH-D 116
Query: 119 AFD--LEILEDISGENAVPLEQITLKDGASAAAGKGHYSLSKYCCKEYAAWDDSFSGDYS 176
FD L L+DI L Q +++ + G+ S+ + ++ F GD+
Sbjct: 117 -FDQPLPDLDDIDVAQQFSLNQSRVEE-ITMREEVGNISILQ---------ENDF-GDFG 164
Query: 177 PAD-DIF--SSHLMEIGMVVSATYSNLNANMENLQSN 210
D +I S + M+VS + SNL E SN
Sbjct: 165 MDDREIMREGSAFEDDDMLVSTSASNLLLEPEQSTSN 201
Score = 113 (44.8 bits), Expect = 9.9e-27, Sum P(4) = 9.9e-27
Identities = 43/179 (24%), Positives = 81/179 (45%)
Query: 600 EKMAVAPATPTGRSSETMAIAPDTLTVKSSELIAMTIESPIFLSVPSRSFETPENAHSIA 659
E+ A+ P P G + + P+ + ++ M I P+ L P PE +I
Sbjct: 468 EESAMPPPPPQGVKRKAGQVDPEP-AIPPQQVEQMEIP-PVEL--P------PEEPPNIC 517
Query: 660 VETLADSYATPKKDLASSKDEDFDLIFMNEESNFGEVDRQESYGFSARTRMVAKYLHRRF 719
+ + + P+K+ K+++ + +E+++ G+ D QE ++ RT+ + L R
Sbjct: 518 -QLIPELELLPEKEKEKEKEKEEEEEEEDEDASGGDQD-QEERRWNKRTQQMLHGLQRAL 575
Query: 720 LCHKERREDEAIKLLPLLEGRTVKETARIFYEILVLQTKGIVNVKQDDAYGDILVVKAP 778
+ E+I LL L K+ A FY LVL+ + + + Q++ Y DI+ P
Sbjct: 576 A----KTGAESISLLELCRNTNRKQAAAKFYSFLVLKKQQAIELTQEEPYSDIIATPGP 630
Score = 60 (26.2 bits), Expect = 9.9e-27, Sum P(4) = 9.9e-27
Identities = 18/52 (34%), Positives = 24/52 (46%)
Query: 404 KECARISRKRKCCFDDVTVFPNDVMRQCIQDASDLVSKRRKVPRTV-LAAWK 454
KE + RKRK D V + +R + D SD+V+ P T L WK
Sbjct: 314 KE-TKAKRKRKLIVDSVKELDSKTIRAQLSDYSDIVTTLDLAPPTKKLMMWK 364
Score = 58 (25.5 bits), Expect = 7.8e-19, Sum P(2) = 7.8e-19
Identities = 15/80 (18%), Positives = 33/80 (41%)
Query: 224 EKHQTNEDMKAAETAQSEKRLEKLQDNSFHGVEE-------ESLDPIKLCGKDHRSDGEQ 276
E+ + +ED + Q E+R K HG++ ES+ ++LC +R
Sbjct: 540 EEEEEDEDASGGDQDQEERRWNKRTQQMLHGLQRALAKTGAESISLLELCRNTNRKQAAA 599
Query: 277 TMVPDIAQLEKETCQATSKD 296
+ +++ + T ++
Sbjct: 600 KFYSFLVLKKQQAIELTQEE 619
Score = 43 (20.2 bits), Expect = 9.9e-27, Sum P(4) = 9.9e-27
Identities = 16/61 (26%), Positives = 31/61 (50%)
Query: 205 ENLQSNNDGGVTEPIEPVGEKHQTNEDMKAAETAQSEKRLEKLQDNSFHGVEE-ESLDPI 263
+ L SNNDGG+ + + E T M + A + +++ + S G + +S+DP+
Sbjct: 231 DKLISNNDGGIFDDPPALSE---TGV-MLPEQPAHDD--MDEDDNGSLGGPDSPDSVDPV 284
Query: 264 K 264
+
Sbjct: 285 E 285
>ZFIN|ZDB-GENE-060503-223 [details] [associations]
symbol:rad21b "RAD21 homolog (S. pombe) b"
species:7955 "Danio rerio" [GO:0000228 "nuclear chromosome"
evidence=IEA] InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824
Pfam:PF04825 ZFIN:ZDB-GENE-060503-223 EMBL:CR786578 GO:GO:0000228
eggNOG:NOG249424 GeneTree:ENSGT00390000011606 HOGENOM:HOG000233800
HOVERGEN:HBG059956 KO:K06670 OMA:VPREEQQ OrthoDB:EOG47PX5K
Gene3D:1.10.10.580 InterPro:IPR023093 EMBL:CR848704 IPI:IPI00491569
RefSeq:NP_001038585.1 UniGene:Dr.84558 Ensembl:ENSDART00000051717
Ensembl:ENSDART00000132800 GeneID:566831 KEGG:dre:566831 CTD:566831
NextBio:20888396 Uniprot:Q1L8E1
Length = 637
Score = 246 (91.7 bits), Expect = 1.0e-26, Sum P(3) = 1.0e-26
Identities = 62/147 (42%), Positives = 88/147 (59%)
Query: 1 MFYSRSLLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEELDVMTYRVLAYL 60
MFY+ +LS++GPL IW+AA+ K+L KA VFE N+ SSV+ I+ ++ M R +L
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVK-MALRTSGHL 59
Query: 61 LLGLVRIYSKKVEYLFDDCNDAVVKINNFLVSEKSMKNLG--NLCAPYCSITLPESFELD 118
LLG+VRIY +K +YL DCN+A +KI + + +L N A Y +ITLPE F D
Sbjct: 60 LLGVVRIYHRKAKYLLADCNEAFIKIK--MAFRPGVVDLPEENREAAYNAITLPEEFH-D 116
Query: 119 AFD--LEILEDISGENAVPLEQITLKD 143
FD L L+DI L Q +++
Sbjct: 117 -FDQPLPDLDDIDVAQQFTLNQSRVEE 142
Score = 115 (45.5 bits), Expect = 1.0e-26, Sum P(3) = 1.0e-26
Identities = 47/179 (26%), Positives = 76/179 (42%)
Query: 600 EKMAVAPATPTGRSSETMAIAPDTLTVKSSELIAMTIESPIFLSVPSRSFETPENAHSIA 659
E + P+ P G+ + P L + + +I S +S+P PE +IA
Sbjct: 467 ESVMPPPSGPRGQKRKAQDGEP-ALPMLEDD--RSSIVSTQHVSLPQVELP-PEEPVNIA 522
Query: 660 VETLADSYATPKKDLASSKDEDFDLIFMNEESNFGEVDRQESYGFSARTRMVAKYLHRRF 719
+ + D +K D+D + EE G+ D QE ++ RT+ + L R
Sbjct: 523 -QLIPDLDLIGEKSKDKKDDDDEE---EEEEGQSGDQD-QEERRWNKRTQQMLHGLQRVI 577
Query: 720 LCHKERREDEAIKLLPLLEGRTVKETARIFYEILVLQTKGIVNVKQDDAYGDILVVKAP 778
+ E+I LL L K+ A FY LVL+ + V ++QD+ Y DI+ P
Sbjct: 578 A----KTGAESISLLDLCRNNNKKQAAAKFYSFLVLKKQQAVELRQDEPYSDIIATPGP 632
Score = 66 (28.3 bits), Expect = 1.0e-26, Sum P(3) = 1.0e-26
Identities = 23/86 (26%), Positives = 34/86 (39%)
Query: 370 DPLSVTVDATPQSKFLDASGATTPEFMVVQTPATKECARISRKRKCCFDDVTVFPNDVMR 429
+PL D T Q+ + F + T + + RKRK D V + +R
Sbjct: 286 EPLPTMTDQTEQTTLVHNEEEA---FALEPIDITVKETKAKRKRKLIVDSVKELDSKTIR 342
Query: 430 QCIQDASDLVSKRRKVPRTV-LAAWK 454
+ D SD+V+ P T L WK
Sbjct: 343 AQLSDYSDIVTTLDLAPPTKKLMMWK 368
Score = 43 (20.2 bits), Expect = 7.9e-17, Sum P(2) = 7.9e-17
Identities = 11/55 (20%), Positives = 25/55 (45%)
Query: 224 EKHQTNEDMKAAETAQSEKRLEKLQDNSFHGVEE-------ESLDPIKLCGKDHR 271
+ + E+ ++ + Q E+R K HG++ ES+ + LC +++
Sbjct: 542 DDEEEEEEGQSGDQDQEERRWNKRTQQMLHGLQRVIAKTGAESISLLDLCRNNNK 596
>UNIPROTKB|E2QRU9 [details] [associations]
symbol:RAD21 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071168 "protein localization to chromatin"
evidence=IEA] [GO:0034991 "nuclear meiotic cohesin complex"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] InterPro:IPR006909
InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825 GO:GO:0006357
GO:GO:0000228 GO:GO:0071168 CTD:5885 GeneTree:ENSGT00390000011606
KO:K06670 OMA:VPREEQQ Gene3D:1.10.10.580 InterPro:IPR023093
EMBL:AAEX03008760 RefSeq:XP_539142.2 Ensembl:ENSCAFT00000001286
GeneID:482021 KEGG:cfa:482021 NextBio:20856709 Uniprot:E2QRU9
Length = 631
Score = 250 (93.1 bits), Expect = 1.2e-26, Sum P(4) = 1.2e-26
Identities = 79/217 (36%), Positives = 116/217 (53%)
Query: 1 MFYSRSLLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEELDVMTYRVLAYL 60
MFY+ +LS++GPL IW+AA+ K+L KA VFE N+ SSV+ I+ ++ M R +L
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVK-MALRTSGHL 59
Query: 61 LLGLVRIYSKKVEYLFDDCNDAVVKINNFLVSEKSMKNLG--NLCAPYCSITLPESFELD 118
LLG+VRIY +K +YL DCN+A +KI + + +L N A Y +ITLPE F D
Sbjct: 60 LLGVVRIYHRKAKYLLADCNEAFIKIK--MAFRPGVVDLPEENREAAYNAITLPEEFH-D 116
Query: 119 AFD--LEILEDISGENAVPLEQITLKDGASAAAGKGHYSLSKYCCKEYAAWDDSFSGDYS 176
FD L L+DI L Q +++ + G+ S+ + ++ F GD+
Sbjct: 117 -FDQPLPDLDDIDVAQQFSLNQSRVEE-ITMREEVGNISILQ---------ENDF-GDFG 164
Query: 177 PAD-DIF--SSHLMEIGMVVSATYSNLNANMENLQSN 210
D +I S + M+VS + SNL E SN
Sbjct: 165 MDDREIMREGSAFEDDDMLVSTSASNLLLEPEQSTSN 201
Score = 115 (45.5 bits), Expect = 1.2e-26, Sum P(4) = 1.2e-26
Identities = 45/185 (24%), Positives = 86/185 (46%)
Query: 595 TGRSS-EKMAVAPATPTGRSSETMAIAPDTLTVKSSELIAMTIESPIFLSVPSRSFETPE 653
T R++ ++ A+ P P G + I P+ + + ++ + I P+ L P PE
Sbjct: 458 TSRTNLDESAMPPPPPQGVKRKAGQIDPEPV-IPPQQVEQVEIP-PVEL--P------PE 507
Query: 654 NAHSIAVETLADSYATPKKDLASSKDEDFDLIFMNEESNFGEVDRQESYGFSARTRMVAK 713
+I + + + P+K+ K+++ D +E+++ G+ D QE ++ RT+ +
Sbjct: 508 EPPNIC-QLIPELELLPEKEKEKEKEKEDDEEEEDEDASGGDQD-QEERRWNKRTQQMLH 565
Query: 714 YLHRRFLCHKERREDEAIKLLPLLEGRTVKETARIFYEILVLQTKGIVNVKQDDAYGDIL 773
L R + E+I LL L K+ A FY LVL+ + + + Q++ Y DI+
Sbjct: 566 GLQRALA----KTGAESISLLELCRNTNRKQAAAKFYSFLVLKKQQAIELTQEEPYSDII 621
Query: 774 VVKAP 778
P
Sbjct: 622 ATPGP 626
Score = 60 (26.2 bits), Expect = 1.2e-26, Sum P(4) = 1.2e-26
Identities = 18/52 (34%), Positives = 24/52 (46%)
Query: 404 KECARISRKRKCCFDDVTVFPNDVMRQCIQDASDLVSKRRKVPRTV-LAAWK 454
KE + RKRK D V + +R + D SD+V+ P T L WK
Sbjct: 314 KE-TKAKRKRKLIVDSVKELDSKTIRAQLSDYSDIVTTLDLAPPTKKLMMWK 364
Score = 56 (24.8 bits), Expect = 1.9e-18, Sum P(3) = 1.9e-18
Identities = 15/84 (17%), Positives = 34/84 (40%)
Query: 220 EPVGEKHQTNEDMKAAETAQSEKRLEKLQDNSFHGVEE-------ESLDPIKLCGKDHRS 272
E ++ + +ED + Q E+R K HG++ ES+ ++LC +R
Sbjct: 532 EKEDDEEEEDEDASGGDQDQEERRWNKRTQQMLHGLQRALAKTGAESISLLELCRNTNRK 591
Query: 273 DGEQTMVPDIAQLEKETCQATSKD 296
+ +++ + T ++
Sbjct: 592 QAAAKFYSFLVLKKQQAIELTQEE 615
Score = 40 (19.1 bits), Expect = 1.2e-26, Sum P(4) = 1.2e-26
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 205 ENLQSNNDGGV 215
+ L SNNDGG+
Sbjct: 231 DKLISNNDGGI 241
Score = 40 (19.1 bits), Expect = 8.4e-17, Sum P(3) = 8.4e-17
Identities = 21/102 (20%), Positives = 41/102 (40%)
Query: 218 PIEPVGEKHQTNEDMKAAETAQSEKRLEKLQDNSFHGVEEESLDPIKLCGKDHRS---DG 274
P E ++HQ + + + + E + + S ++E ++ P G ++ D
Sbjct: 426 PREDQQQQHQQRDVIDEPILEEPSRLQESVMETSRTNLDESAMPPPPPQGVKRKAGQIDP 485
Query: 275 EQTMVPD-IAQLEKETCQATSKDINKNITMLQASTEKLCEHE 315
E + P + Q+E + ++ NI L E L E E
Sbjct: 486 EPVIPPQQVEQVEIPPVELPPEE-PPNICQLIPELELLPEKE 526
>UNIPROTKB|F1S1K0 [details] [associations]
symbol:LOC100738633 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0000228 "nuclear chromosome" evidence=IEA]
InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825
GO:GO:0000228 GeneTree:ENSGT00390000011606 KO:K06670 OMA:VPREEQQ
Gene3D:1.10.10.580 InterPro:IPR023093 EMBL:AEMK01148771
EMBL:CU467777 EMBL:CU656020 RefSeq:XP_003481396.1
Ensembl:ENSSSCT00000006600 Ensembl:ENSSSCT00000033947
GeneID:100738633 KEGG:ssc:100738633 Uniprot:F1S1K0
Length = 631
Score = 250 (93.1 bits), Expect = 1.2e-26, Sum P(4) = 1.2e-26
Identities = 79/217 (36%), Positives = 116/217 (53%)
Query: 1 MFYSRSLLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEELDVMTYRVLAYL 60
MFY+ +LS++GPL IW+AA+ K+L KA VFE N+ SSV+ I+ ++ M R +L
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVK-MALRTSGHL 59
Query: 61 LLGLVRIYSKKVEYLFDDCNDAVVKINNFLVSEKSMKNLG--NLCAPYCSITLPESFELD 118
LLG+VRIY +K +YL DCN+A +KI + + +L N A Y +ITLPE F D
Sbjct: 60 LLGVVRIYHRKAKYLLADCNEAFIKIK--MAFRPGVVDLPEENREAAYNAITLPEEFH-D 116
Query: 119 AFD--LEILEDISGENAVPLEQITLKDGASAAAGKGHYSLSKYCCKEYAAWDDSFSGDYS 176
FD L L+DI L Q +++ + G+ S+ + ++ F GD+
Sbjct: 117 -FDQPLPDLDDIDVAQQFSLNQSRVEE-ITMREEVGNISILQ---------ENDF-GDFG 164
Query: 177 PAD-DIF--SSHLMEIGMVVSATYSNLNANMENLQSN 210
D +I S + M+VS + SNL E SN
Sbjct: 165 MDDREIMREGSAFEDDDMLVSTSASNLLLEPEQSTSN 201
Score = 115 (45.5 bits), Expect = 1.2e-26, Sum P(4) = 1.2e-26
Identities = 46/202 (22%), Positives = 89/202 (44%)
Query: 577 ETPTCRSPEKRAFAPDTPTGRSSEKMAVAPATPTGRSSETMAIAPDTLTVKSSELIAMTI 636
+ P P + + + + ++ A+ P P G + I P+ + + ++ M I
Sbjct: 441 DEPILEEPSRLQDSAMEASRTNLDESAMPPPPPQGVKRKAGQIDPEPV-IPPQQVEHMEI 499
Query: 637 ESPIFLSVPSRSFETPENAHSIAVETLADSYATPKKDLASSKDEDFDLIFMNEESNFGEV 696
P+ L P PE +I + + + P+K+ K+++ D +E+++ G+
Sbjct: 500 P-PVEL--P------PEEPPNIC-QLIPELELLPEKEKEKEKEKEDDEEEEDEDASGGDQ 549
Query: 697 DRQESYGFSARTRMVAKYLHRRFLCHKERREDEAIKLLPLLEGRTVKETARIFYEILVLQ 756
D QE ++ RT+ + L R + E+I LL L K+ A FY LVL+
Sbjct: 550 D-QEERRWNKRTQQMLHGLQRALA----KTGAESISLLELCRNTNRKQAAAKFYSFLVLK 604
Query: 757 TKGIVNVKQDDAYGDILVVKAP 778
+ + + Q++ Y DI+ P
Sbjct: 605 KQQAIELTQEEPYSDIVATPGP 626
Score = 60 (26.2 bits), Expect = 1.2e-26, Sum P(4) = 1.2e-26
Identities = 18/52 (34%), Positives = 24/52 (46%)
Query: 404 KECARISRKRKCCFDDVTVFPNDVMRQCIQDASDLVSKRRKVPRTV-LAAWK 454
KE + RKRK D V + +R + D SD+V+ P T L WK
Sbjct: 314 KE-TKAKRKRKLIVDSVKELDSKTIRAQLSDYSDIVTTLDLAPPTKKLMMWK 364
Score = 56 (24.8 bits), Expect = 1.9e-18, Sum P(3) = 1.9e-18
Identities = 15/84 (17%), Positives = 34/84 (40%)
Query: 220 EPVGEKHQTNEDMKAAETAQSEKRLEKLQDNSFHGVEE-------ESLDPIKLCGKDHRS 272
E ++ + +ED + Q E+R K HG++ ES+ ++LC +R
Sbjct: 532 EKEDDEEEEDEDASGGDQDQEERRWNKRTQQMLHGLQRALAKTGAESISLLELCRNTNRK 591
Query: 273 DGEQTMVPDIAQLEKETCQATSKD 296
+ +++ + T ++
Sbjct: 592 QAAAKFYSFLVLKKQQAIELTQEE 615
Score = 40 (19.1 bits), Expect = 1.2e-26, Sum P(4) = 1.2e-26
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 205 ENLQSNNDGGV 215
+ L SNNDGG+
Sbjct: 231 DKLISNNDGGI 241
>UNIPROTKB|F1NYD0 [details] [associations]
symbol:RAD21 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0034991 "nuclear meiotic
cohesin complex" evidence=IEA] [GO:0071168 "protein localization to
chromatin" evidence=IEA] InterPro:IPR006909 InterPro:IPR006910
Pfam:PF04824 Pfam:PF04825 GO:GO:0006357 GO:GO:0000228 GO:GO:0071168
GeneTree:ENSGT00390000011606 OMA:VPREEQQ Gene3D:1.10.10.580
InterPro:IPR023093 EMBL:AADN02022645 IPI:IPI00679990
Ensembl:ENSGALT00000025968 Uniprot:F1NYD0
Length = 633
Score = 250 (93.1 bits), Expect = 5.0e-26, Sum P(4) = 5.0e-26
Identities = 75/236 (31%), Positives = 124/236 (52%)
Query: 1 MFYSRSLLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEELDVMTYRVLAYL 60
MFY+ +LS++GPL IW+AA+ K+L KA VFE N+ SSV+ I+ ++ M R +L
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVK-MALRTSGHL 59
Query: 61 LLGLVRIYSKKVEYLFDDCNDAVVKINNFLVSEKSMKNLG--NLCAPYCSITLPESFE-- 116
LLG+VRIY +K +YL DCN+A +KI + + +L N A Y +ITLPE F
Sbjct: 60 LLGVVRIYHRKAKYLLADCNEAFIKIK--MAFRPGVVDLPEENREAAYNAITLPEEFHDF 117
Query: 117 ----LDAFDLEILEDISGENAVPLEQITLKDGASAAA-----GKGHYSLS-KYCCKEYAA 166
D D+++ + S N +E+IT+++ + G + + + +E +A
Sbjct: 118 DQPLPDLDDIDVAQQFS-LNQSRVEEITMREEVGNISILQDNDFGDFGMDDREMMREGSA 176
Query: 167 WDDSFSGDYSPADDIF-----SSHLMEIGMVVSATYSNLNANMENLQSNNDGGVTE 217
++D S ++ + +SHL E + Y + + +N NDGG+ +
Sbjct: 177 FEDDMLVSTSASNLLLEPEQSTSHLNEKANHLE--YEDQYKD-DNFGEGNDGGILD 229
Score = 108 (43.1 bits), Expect = 5.0e-26, Sum P(4) = 5.0e-26
Identities = 36/146 (24%), Positives = 64/146 (43%)
Query: 639 PIFLSVPSRSFETP------ENAHSIAVETLADSYATPKKDLASSKDEDFDLIFMNEESN 692
P+ PS+ E P E +I + + + P+K+ K+++ + E+
Sbjct: 489 PVLPHPPSQQLEIPPVEMPPEEPQNIC-QLIPELELLPEKEKEKEKEKEEEEEEEEEDGT 547
Query: 693 FGEVDRQESYGFSARTRMVAKYLHRRFLCHKERREDEAIKLLPLLEGRTVKETARIFYEI 752
G+ D QE ++ RT+ + L R + E+I LL L K+ A FY
Sbjct: 548 GGDQD-QEERRWNKRTQQMLHGLQRALA----KTGAESISLLELCRNTNRKQAAAKFYSF 602
Query: 753 LVLQTKGIVNVKQDDAYGDILVVKAP 778
LVL+ + + + Q++ Y DI+ P
Sbjct: 603 LVLKKQQAIELTQEEPYSDIIATPGP 628
Score = 60 (26.2 bits), Expect = 5.0e-26, Sum P(4) = 5.0e-26
Identities = 18/52 (34%), Positives = 24/52 (46%)
Query: 404 KECARISRKRKCCFDDVTVFPNDVMRQCIQDASDLVSKRRKVPRTV-LAAWK 454
KE + RKRK D V + +R + D SD+V+ P T L WK
Sbjct: 313 KE-TKAKRKRKLIVDSVKELDSKTIRAQLSDYSDIVTTLDLAPPTKKLMMWK 363
Score = 54 (24.1 bits), Expect = 2.5e-18, Sum P(3) = 2.5e-18
Identities = 15/80 (18%), Positives = 32/80 (40%)
Query: 224 EKHQTNEDMKAAETAQSEKRLEKLQDNSFHGVEE-------ESLDPIKLCGKDHRSDGEQ 276
E+ + ED + Q E+R K HG++ ES+ ++LC +R
Sbjct: 538 EEEEEEEDGTGGDQDQEERRWNKRTQQMLHGLQRALAKTGAESISLLELCRNTNRKQAAA 597
Query: 277 TMVPDIAQLEKETCQATSKD 296
+ +++ + T ++
Sbjct: 598 KFYSFLVLKKQQAIELTQEE 617
Score = 41 (19.5 bits), Expect = 5.0e-26, Sum P(4) = 5.0e-26
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 205 ENLQSNNDGGV 215
+ L SNNDGG+
Sbjct: 230 DKLLSNNDGGI 240
>UNIPROTKB|O93310 [details] [associations]
symbol:rad21 "Double-strand-break repair protein rad21
homolog" species:8355 "Xenopus laevis" [GO:0071168 "protein
localization to chromatin" evidence=ISS] InterPro:IPR006909
InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825 GO:GO:0006915
GO:GO:0007059 GO:GO:0000775 GO:GO:0051301 GO:GO:0007067
GO:GO:0006281 GO:GO:0000228 GO:GO:0071168 CTD:5885
HOVERGEN:HBG059956 KO:K06670 Gene3D:1.10.10.580 InterPro:IPR023093
EMBL:AF051786 RefSeq:NP_001083807.1 UniGene:Xl.53864
ProteinModelPortal:O93310 IntAct:O93310 GeneID:399129
KEGG:xla:399129 Uniprot:O93310
Length = 629
Score = 246 (91.7 bits), Expect = 6.8e-25, Sum P(3) = 6.8e-25
Identities = 61/154 (39%), Positives = 92/154 (59%)
Query: 1 MFYSRSLLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEELDVMTYRVLAYL 60
MFY+ +LS++GPL IW+AA+ K+L KA VFE N+ SSV+ I+ ++ M R +L
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIICPKVK-MALRTSGHL 59
Query: 61 LLGLVRIYSKKVEYLFDDCNDAVVKINNFLVSEKSMKNLG--NLCAPYCSITLPESFE-- 116
LLG+VRIY +K +YL DCN+A +KI + + +L N A Y +ITLPE F
Sbjct: 60 LLGVVRIYHRKAKYLLADCNEAFIKIK--MAFRPGVVDLPEENREAAYNAITLPEEFHDF 117
Query: 117 ----LDAFDLEILEDISGENAVPLEQITLKDGAS 146
D D+++ + S N +E+IT+++ S
Sbjct: 118 DQPLPDLDDIDVAQQFS-LNQSRVEEITMREEVS 150
Score = 103 (41.3 bits), Expect = 6.8e-25, Sum P(3) = 6.8e-25
Identities = 36/127 (28%), Positives = 58/127 (45%)
Query: 652 PENAHSIAVETLADSYATPKKDLASSKDEDFDLIFMNEESNFGEVDRQESYGFSARTRMV 711
PE SI+ + + + P+K+ KDE+ + EE G QE ++ RT+ +
Sbjct: 508 PEEPQSIS-DLIPELNLLPEKE--KEKDEEEE---EEEEDTTGTEQDQEERRWNKRTQQM 561
Query: 712 AKYLHRRFLCHKERREDEAIKLLPLLEGRTVKETARIFYEILVLQTKGIVNVKQDDAYGD 771
L +R L + E+I LL L K+ A FY LVL+ + + + Q + Y D
Sbjct: 562 LHGL-QRVLA---KTGAESISLLDLCRNTNRKQAAAKFYSFLVLKKQQAIELTQREPYSD 617
Query: 772 ILVVKAP 778
I+ P
Sbjct: 618 IVATPGP 624
Score = 60 (26.2 bits), Expect = 6.8e-25, Sum P(3) = 6.8e-25
Identities = 18/52 (34%), Positives = 24/52 (46%)
Query: 404 KECARISRKRKCCFDDVTVFPNDVMRQCIQDASDLVSKRRKVPRTV-LAAWK 454
KE + RKRK D V + +R + D SD+V+ P T L WK
Sbjct: 312 KE-TKAKRKRKLIVDSVKELDSKTIRAQLSDYSDIVTTLDLAPPTKKLMMWK 362
Score = 58 (25.5 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 16/80 (20%), Positives = 31/80 (38%)
Query: 224 EKHQTNEDMKAAETAQSEKRLEKLQDNSFHGVEE-------ESLDPIKLCGKDHRSDGEQ 276
E+ + ED E Q E+R K HG++ ES+ + LC +R
Sbjct: 534 EEEEEEEDTTGTEQDQEERRWNKRTQQMLHGLQRVLAKTGAESISLLDLCRNTNRKQAAA 593
Query: 277 TMVPDIAQLEKETCQATSKD 296
+ +++ + T ++
Sbjct: 594 KFYSFLVLKKQQAIELTQRE 613
Score = 38 (18.4 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 751 EILVLQTKGIVNVKQDDAYGD 771
EI + + +N+ QD+ +GD
Sbjct: 142 EITMREEVSNINILQDNDFGD 162
>FB|FBgn0260987 [details] [associations]
symbol:vtd "verthandi" species:7227 "Drosophila melanogaster"
[GO:0006289 "nucleotide-excision repair" evidence=NAS] [GO:0008278
"cohesin complex" evidence=ISS;IDA;NAS;IPI] [GO:0007064 "mitotic
sister chromatid cohesion" evidence=ISS;IMP;NAS] [GO:0000775
"chromosome, centromeric region" evidence=NAS] [GO:0007067
"mitosis" evidence=IMP] [GO:0000228 "nuclear chromosome"
evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IDA] [GO:0007052 "mitotic spindle organization"
evidence=IMP] [GO:0005705 "polytene chromosome interband"
evidence=IDA] [GO:0016322 "neuron remodeling" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0010628 "positive
regulation of gene expression" evidence=IGI] InterPro:IPR006909
InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825 GO:GO:0005634
GO:GO:0007052 GO:GO:0016322 GO:GO:0010628 GO:GO:0005721
GO:GO:0000228 GO:GO:0007064 GO:GO:0008278 GO:GO:0005705
EMBL:CM000458 eggNOG:NOG249424 GeneTree:ENSGT00390000011606
KO:K06670 Gene3D:1.10.10.580 InterPro:IPR023093 EMBL:AF109926
EMBL:AF267746 EMBL:AF267745 EMBL:BT100037 RefSeq:NP_001015132.1
UniGene:Dm.3062 DIP:DIP-18950N MINT:MINT-1730906 STRING:O96689
EnsemblMetazoa:FBtr0113746 GeneID:3354896 KEGG:dme:Dmel_CG17436
UCSC:CG17436-RA CTD:3354896 FlyBase:FBgn0260987 InParanoid:O96689
OMA:KRLMHWK OrthoDB:EOG44J102 GenomeRNAi:3354896 NextBio:849550
Uniprot:O96689
Length = 715
Score = 250 (93.1 bits), Expect = 7.0e-24, Sum P(4) = 7.0e-24
Identities = 68/161 (42%), Positives = 93/161 (57%)
Query: 1 MFYSRSLLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEELDVMTYRVLAYL 60
MFY +L++KGPL IW+AA+ K++ KA VFETNI SV+ IL+ ++ + R +L
Sbjct: 1 MFYEHIILAKKGPLARIWLAAHWDKKITKAHVFETNIEKSVEGILQPKVK-LALRTSGHL 59
Query: 61 LLGLVRIYSKKVEYLFDDCNDAVVKINNFLVSEKSMKNL--GNLCAPYCSITLPESFELD 118
LLG+VRIYS+K +YL DCN+A VKI + M +L G+ A +ITLPE F D
Sbjct: 60 LLGVVRIYSRKAKYLLADCNEAFVKIK--MAFRPGMVDLPEGHREANVNAITLPEVFH-D 116
Query: 119 AFDLEI--LEDISGENAVPLEQITLKDGASAAAGKGHYSLS 157
FD + L DI E + Q + D + G SLS
Sbjct: 117 -FDTALPELNDIDIEAQFSINQ-SRADEITMREDYGSLSLS 155
Score = 83 (34.3 bits), Expect = 7.0e-24, Sum P(4) = 7.0e-24
Identities = 15/53 (28%), Positives = 32/53 (60%)
Query: 729 EAIKLLPLLEGRTVKETARIFYEILVLQTKGIVNVKQDDAYGDILVVKAPWWD 781
++++L L G + K+ A+ FY +LVL+ ++++ Q Y DI + + P ++
Sbjct: 659 DSLELSQLTSGNSRKQAAQKFYSLLVLKKFKVLHIDQSAPYADITITRGPTFE 711
Score = 60 (26.2 bits), Expect = 7.0e-24, Sum P(4) = 7.0e-24
Identities = 15/52 (28%), Positives = 24/52 (46%)
Query: 404 KECARISRKRKCCFDDVTVFPNDVMRQCIQDASDLVSKRRKVPRTV-LAAWK 454
K + RKRK D++ + M+ + D SD+++ P T L WK
Sbjct: 324 KGVTKAKRKRKLIIDEIKNISGEEMKAQLADTSDILTTLDLAPPTKRLMYWK 375
Score = 49 (22.3 bits), Expect = 7.0e-24, Sum P(4) = 7.0e-24
Identities = 17/74 (22%), Positives = 32/74 (43%)
Query: 445 VPRTVLAAWKAS---RISNLSQGFXXXXXXCISLELRAFLCQERLKIPETAKSVELLEPE 501
VP +V+ + +A R ++ S G +S E + CQ L + +S +LL
Sbjct: 459 VPDSVVQSLEAPEVLRANHKSLGVSTVSVEIVSKEQESISCQNELTFFDNMRSPDLLSLN 518
Query: 502 LPTVHKSLEKMAIT 515
S+ ++ +T
Sbjct: 519 EMEQFSSINELPLT 532
Score = 45 (20.9 bits), Expect = 2.1e-21, Sum P(3) = 2.1e-21
Identities = 25/106 (23%), Positives = 45/106 (42%)
Query: 195 ATYSNLNANMENLQSN-NDGGVTEPIEPVGEKHQTNEDMKAAE--TAQSEKRLEKLQDNS 251
A + N N + + + D P+E + + T E+ A + KR N
Sbjct: 395 ALFGNYNRQLFSHSTFFEDFSSVVPMEILALEFYTKENENALIIFNKKGRKRKNDNMSNL 454
Query: 252 F--HGVEE--ESLDPIKLCGKDHRSDGEQTMVPDIAQLEKET--CQ 291
F H + +SL+ ++ +H+S G T+ +I E+E+ CQ
Sbjct: 455 FLDHVPDSVVQSLEAPEVLRANHKSLGVSTVSVEIVSKEQESISCQ 500
Score = 40 (19.1 bits), Expect = 9.3e-17, Sum P(2) = 9.3e-17
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 751 EILVLQTKGIVNVK-QDDAYGDI 772
EI + + G +++ QDD +GDI
Sbjct: 142 EITMREDYGSLSLSLQDDGFGDI 164
>UNIPROTKB|D2HSB3 [details] [associations]
symbol:RAD21L1 "Double-strand-break repair protein
rad21-like protein 1" species:9646 "Ailuropoda melanoleuca"
[GO:0005634 "nucleus" evidence=ISS] [GO:0005694 "chromosome"
evidence=ISS] [GO:0007128 "meiotic prophase I" evidence=ISS]
[GO:0030893 "meiotic cohesin complex" evidence=ISS]
InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825
GO:GO:0005634 GO:GO:0007059 GO:GO:0000228 GO:GO:0007128
GO:GO:0030893 Gene3D:1.10.10.580 InterPro:IPR023093 EMBL:GL193270
RefSeq:XP_002925456.1 GeneID:100475087 KEGG:aml:100475087
CTD:642636 Uniprot:D2HSB3
Length = 554
Score = 247 (92.0 bits), Expect = 3.0e-21, Sum P(3) = 3.0e-21
Identities = 58/152 (38%), Positives = 95/152 (62%)
Query: 1 MFYSRSLLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEELDVMTYRVLAYL 60
MFY+ L+S++GPL IW+AA+ K+L KA VFE N+ ++++IL ++ + R +L
Sbjct: 1 MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIEKILSSKVKI-ALRTSGHL 59
Query: 61 LLGLVRIYSKKVEYLFDDCNDAVVKINNFLVSEKSMKNLG--NLCAPYCSITLPESF-EL 117
LLG+VRIY++K +YL DCN+A++K+ + + +L N A Y +ITLPE F +
Sbjct: 60 LLGVVRIYNRKAKYLLADCNEALLKMK--MTFRPGLVDLPKENFEAAYNAITLPEEFHDF 117
Query: 118 DAFDLEILEDISG---ENAVPLEQITLKDGAS 146
D ++ + D+S +N E+ITL++ S
Sbjct: 118 DTQNVNAI-DVSEHFTQNQSKPEEITLREDYS 148
Score = 71 (30.1 bits), Expect = 3.0e-21, Sum P(3) = 3.0e-21
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 733 LLPLLEGRTVKETARIFYEILVLQTKGIVNVKQDDAYGDILVVKAP 778
L+ L K+ A FY LVL+ + + + Q D Y DI+ P
Sbjct: 504 LMKLCRNSDRKQAAAKFYSFLVLKKQQAIELSQSDPYADIIATVGP 549
Score = 52 (23.4 bits), Expect = 3.0e-21, Sum P(3) = 3.0e-21
Identities = 33/164 (20%), Positives = 65/164 (39%)
Query: 303 MLQASTEKLCEHEVPQVCSGVEMCYGSKEELPKQVELSGE--EHHSNTEQMKVMEISSRN 360
+L S+ L EH + + Y S++ + +GE ++ +Q ++E S N
Sbjct: 175 ILLNSSGPLVEHSSGSIAGEKPLFYDSEDGFGDE-GAAGEMIDNLLQDDQNILLEDSHLN 233
Query: 361 NECQVMKREDPLSVTVDAT-------PQSKFLDASGATTPEFMVVQTPATKECA--RISR 411
E + E P ++ V+ P++ +D + + E + + A R ++
Sbjct: 234 REIS-LPPEPPDTIVVEPDNPEYIRLPENGKMDETLSNEEEGFTLDPIDVSDIAEKRKAK 292
Query: 412 KRKCCFDDVTVFPNDVMRQCIQDASDLVSKRRKVPRTV-LAAWK 454
KRK D + + +M + + D + P T L WK
Sbjct: 293 KRKLLIDPIKEISSKIMHKQLTSFMDTLMVLELAPPTQRLMMWK 336
Score = 46 (21.3 bits), Expect = 1.2e-20, Sum P(3) = 1.2e-20
Identities = 17/67 (25%), Positives = 30/67 (44%)
Query: 285 LEKETCQATSKDINKNITMLQASTEKLCEHEVPQVCSGVEMCYGSK-EELPKQVELSGEE 343
++ C ++ +DINKNI Q E + + S + + E ++E SG E
Sbjct: 416 IDGSKC-SSHEDINKNINSEQDIVEMVSSGT--EESSSMNAILAQEIENCTVELESSGNE 472
Query: 344 HHSNTEQ 350
+ TE+
Sbjct: 473 QNIETER 479
>UNIPROTKB|E5RFV8 [details] [associations]
symbol:RAD21 "Double-strand-break repair protein rad21
homolog" species:9606 "Homo sapiens" [GO:0034991 "nuclear meiotic
cohesin complex" evidence=IEA] InterPro:IPR006910 Pfam:PF04825
HGNC:HGNC:9811 ChiTaRS:RAD21 EMBL:AC087350 IPI:IPI00980208
Ensembl:ENST00000517485 ArrayExpress:E5RFV8 Bgee:E5RFV8
Uniprot:E5RFV8
Length = 225
Score = 255 (94.8 bits), Expect = 9.2e-21, P = 9.2e-21
Identities = 80/217 (36%), Positives = 116/217 (53%)
Query: 1 MFYSRSLLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEELDVMTYRVLAYL 60
MFY+ +LS++GPL IW+AA+ K+L KA VFE N+ SSV+ I+ ++ M R +L
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVK-MALRTSGHL 59
Query: 61 LLGLVRIYSKKVEYLFDDCNDAVVKINNFLVSEKSMKNLG--NLCAPYCSITLPESFELD 118
LLG+VRIY +K +YL DCN+A +KI + + +L N A Y +ITLPE F D
Sbjct: 60 LLGVVRIYHRKAKYLLADCNEAFIKIK--MAFRPGVVDLPEENREAAYNAITLPEEFH-D 116
Query: 119 AFD--LEILEDISGENAVPLEQITLKDGASAAAGKGHYSLSKYCCKEYAAWDDSFSGDYS 176
FD L L+DI L Q +++ + G+ S+ + ++ F GD+
Sbjct: 117 -FDQPLPDLDDIDVAQQFSLNQSRVEE-ITMREEVGNISILQ---------ENDF-GDFG 164
Query: 177 PAD-DIF--SSHLMEIGMVVSATYSNLNANMENLQSN 210
D +I S + M+VS T SNL E SN
Sbjct: 165 MDDREIMREGSAFEDDDMLVSTTTSNLLLESEQSTSN 201
>UNIPROTKB|E5RIN7 [details] [associations]
symbol:RAD21 "Double-strand-break repair protein rad21
homolog" species:9606 "Homo sapiens" [GO:0034991 "nuclear meiotic
cohesin complex" evidence=IEA] InterPro:IPR006910 Pfam:PF04825
HGNC:HGNC:9811 ChiTaRS:RAD21 EMBL:AC087350 IPI:IPI00982810
Ensembl:ENST00000520992 ArrayExpress:E5RIN7 Bgee:E5RIN7
Uniprot:E5RIN7
Length = 228
Score = 255 (94.8 bits), Expect = 9.2e-21, P = 9.2e-21
Identities = 80/217 (36%), Positives = 116/217 (53%)
Query: 1 MFYSRSLLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEELDVMTYRVLAYL 60
MFY+ +LS++GPL IW+AA+ K+L KA VFE N+ SSV+ I+ ++ M R +L
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVK-MALRTSGHL 59
Query: 61 LLGLVRIYSKKVEYLFDDCNDAVVKINNFLVSEKSMKNLG--NLCAPYCSITLPESFELD 118
LLG+VRIY +K +YL DCN+A +KI + + +L N A Y +ITLPE F D
Sbjct: 60 LLGVVRIYHRKAKYLLADCNEAFIKIK--MAFRPGVVDLPEENREAAYNAITLPEEFH-D 116
Query: 119 AFD--LEILEDISGENAVPLEQITLKDGASAAAGKGHYSLSKYCCKEYAAWDDSFSGDYS 176
FD L L+DI L Q +++ + G+ S+ + ++ F GD+
Sbjct: 117 -FDQPLPDLDDIDVAQQFSLNQSRVEE-ITMREEVGNISILQ---------ENDF-GDFG 164
Query: 177 PAD-DIF--SSHLMEIGMVVSATYSNLNANMENLQSN 210
D +I S + M+VS T SNL E SN
Sbjct: 165 MDDREIMREGSAFEDDDMLVSTTTSNLLLESEQSTSN 201
>UNIPROTKB|E1B9J3 [details] [associations]
symbol:RAD21L1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070197 "attachment of telomeric heterochromatin to
nuclear envelope" evidence=IEA] [GO:0030893 "meiotic cohesin
complex" evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0007129 "synapsis" evidence=IEA] [GO:0007128 "meiotic prophase
I" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0000800 "lateral element" evidence=IEA]
InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825
GO:GO:0000228 GO:GO:0007128 GO:GO:0030893
GeneTree:ENSGT00390000011606 Gene3D:1.10.10.580 InterPro:IPR023093
OMA:GMQSFSL EMBL:DAAA02036365 IPI:IPI00704766
Ensembl:ENSBTAT00000001812 Uniprot:E1B9J3
Length = 557
Score = 246 (91.7 bits), Expect = 3.4e-20, Sum P(3) = 3.4e-20
Identities = 59/177 (33%), Positives = 103/177 (58%)
Query: 1 MFYSRSLLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEELDVMTYRVLAYL 60
MFY+ L+S++GPL IW+AA+ K+L KA VFE N+ ++++IL ++ + R +L
Sbjct: 1 MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIEKILSPKVKI-ALRTSGHL 59
Query: 61 LLGLVRIYSKKVEYLFDDCNDAVVKINNFLVSEKSMKNLG--NLCAPYCSITLPESF-EL 117
LLG+VRIY++K +YL DC++A++K+ + + +L + A Y +ITLPE F +
Sbjct: 60 LLGVVRIYNRKAKYLLADCSEALLKMK--MTFRPGLVDLPKESFEAAYSTITLPEEFHDF 117
Query: 118 DAFDLEILE--DISGENAVPLEQITLKD--GASAAAGKGHYSLSKYCCKEYAAWDDS 170
D + ++ + S +N E+ITL++ G G + + ++ +DDS
Sbjct: 118 DTQTMNAIDVSECSIQNQSKPEEITLREDYGNDLLFHAGSFGEEPEILRRHSLFDDS 174
Score = 63 (27.2 bits), Expect = 3.4e-20, Sum P(3) = 3.4e-20
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 733 LLPLLEGRTVKETARIFYEILVLQTKGIVNVKQDDAYGDILVVKAP 778
L+ L K+TA FY L+L+ + + Q Y DI+ P
Sbjct: 507 LMKLCRNSDRKQTAAKFYSFLMLKKHQAIELSQSAPYADIIATVGP 552
Score = 51 (23.0 bits), Expect = 3.4e-20, Sum P(3) = 3.4e-20
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 568 SSEKMVVAPETPTCR-SPEKRAFAPDTPTGRSSEKMAVAP 606
S +VVAP+ P C SPE +T + E+ + P
Sbjct: 242 SPNTVVVAPDNPECVCSPENEKM-DETTVSKEEEEFILDP 280
Score = 38 (18.4 bits), Expect = 7.2e-19, Sum P(3) = 7.2e-19
Identities = 15/50 (30%), Positives = 21/50 (42%)
Query: 553 SSEKMVVAPETPTGGSSEKMVVAPETPTCRSPEKRAFAP-DTPTGRSSEK 601
S +VVAP+ P S + ET + E+ P DT +EK
Sbjct: 242 SPNTVVVAPDNPECVCSPENEKMDETTVSKEEEEFILDPIDTSDLDIAEK 291
Score = 37 (18.1 bits), Expect = 9.2e-19, Sum P(3) = 9.2e-19
Identities = 13/49 (26%), Positives = 18/49 (36%)
Query: 583 SPEKRAFAPDTPTGRSSEKMAVAPATPTGRSSETMAIAP-DTLTVKSSE 630
SP APD P S + T + E + P DT + +E
Sbjct: 242 SPNTVVVAPDNPECVCSPENEKMDETTVSKEEEEFILDPIDTSDLDIAE 290
>UNIPROTKB|F1PWJ5 [details] [associations]
symbol:RAD21L1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0000228 "nuclear chromosome"
evidence=IEA] InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824
Pfam:PF04825 GO:GO:0000228 GeneTree:ENSGT00390000011606
Gene3D:1.10.10.580 InterPro:IPR023093 CTD:642636 OMA:GMQSFSL
EMBL:AAEX03013845 RefSeq:XP_851946.2 Ensembl:ENSCAFT00000010977
GeneID:609572 KEGG:cfa:609572 Uniprot:F1PWJ5
Length = 555
Score = 245 (91.3 bits), Expect = 5.3e-20, Sum P(3) = 5.3e-20
Identities = 58/178 (32%), Positives = 104/178 (58%)
Query: 1 MFYSRSLLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEELDVMTYRVLAYL 60
MFY+ L+S++GPL IW+AA+ K+L KA VFE N+ ++++I+ ++ + R +L
Sbjct: 1 MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIEKIISPKVKI-ALRTSGHL 59
Query: 61 LLGLVRIYSKKVEYLFDDCNDAVVKINNFLVSEKSMKNLG--NLCAPYCSITLPESF-EL 117
LLG+VRIY++K +YL DC++A++K+ + + +L N A Y +ITLPE F +
Sbjct: 60 LLGVVRIYNRKAKYLLADCSEALLKMK--MTFRPGLVDLPKENFEAAYSAITLPEEFHDF 117
Query: 118 DAFD---LEILEDISGENAVPLEQITLKD--GASAAAGKGHYSLSKYCCKEYAAWDDS 170
D + +++ E + + P E+ITL++ G G + + ++ +DD+
Sbjct: 118 DTHNVNAIDVSEQFTHNQSRP-EEITLREHYGNDLLFQAGSFGEEPEILRRHSFFDDN 174
Score = 63 (27.2 bits), Expect = 5.3e-20, Sum P(3) = 5.3e-20
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 733 LLPLLEGRTVKETARIFYEILVLQTKGIVNVKQDDAYGDILVVKAP 778
L+ L K+ A FY LVL+ + + + Q Y DI+ P
Sbjct: 505 LMKLCRNSDRKQAAAKFYSFLVLKKQQAIELSQSAPYADIIATVGP 550
Score = 50 (22.7 bits), Expect = 5.3e-20, Sum P(3) = 5.3e-20
Identities = 17/59 (28%), Positives = 25/59 (42%)
Query: 292 ATSKDINKNITMLQASTEKLCEHEVPQVCSGVEMCYGSKEELPKQVELSGEEHHSNTEQ 350
++ +DINKN Q E L + M E P ++E SG E +TE+
Sbjct: 423 SSHEDINKNFNSEQVIVE-LVSSAAEESSLMNAMLAREIENCPVELESSGNEQSIDTER 480
Score = 47 (21.6 bits), Expect = 1.1e-19, Sum P(3) = 1.1e-19
Identities = 19/79 (24%), Positives = 33/79 (41%)
Query: 380 PQSKFLDASGATTPEFMVVQTPAT-KECA--RISRKRKCCFDDVTVFPNDVMRQCIQDAS 436
P++ +D + +T E + P + A R +KRK D V + +M + + +
Sbjct: 259 PENGKMDETSLSTEEQGITLEPIDISDIAEKRKGKKRKLLIDPVKEISSKIMHKQLTCFT 318
Query: 437 DLVSKRRKVPRTV-LAAWK 454
D + P T L WK
Sbjct: 319 DTLMVLELAPPTQRLMMWK 337
>RGD|1587557 [details] [associations]
symbol:Rad21l1 "RAD21-like 1 (S. pombe)" species:10116 "Rattus
norvegicus" [GO:0000228 "nuclear chromosome" evidence=IEA]
[GO:0000800 "lateral element" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005694 "chromosome" evidence=ISO] [GO:0006302
"double-strand break repair" evidence=ISO] [GO:0007129 "synapsis"
evidence=ISO] [GO:0007283 "spermatogenesis" evidence=ISO]
[GO:0030893 "meiotic cohesin complex" evidence=ISO] [GO:0070197
"attachment of telomeric heterochromatin to nuclear envelope"
evidence=ISO] InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824
Pfam:PF04825 RGD:1587557 GO:GO:0000228 GO:GO:0007128 GO:GO:0030893
GeneTree:ENSGT00390000011606 Gene3D:1.10.10.580 InterPro:IPR023093
OrthoDB:EOG49S67J IPI:IPI00763893 Ensembl:ENSRNOT00000055455
UCSC:RGD:1587557 Uniprot:D4ADQ7
Length = 550
Score = 246 (91.7 bits), Expect = 6.3e-20, Sum P(2) = 6.3e-20
Identities = 56/149 (37%), Positives = 94/149 (63%)
Query: 1 MFYSRSLLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEELDVMTYRVLAYL 60
MFY+ L+S++GPL IW+AA+ K+L KA VFE N+ ++ +I+ ++ + R +L
Sbjct: 1 MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIQKIISPKVKI-ALRTSGHL 59
Query: 61 LLGLVRIYSKKVEYLFDDCNDAVVKINNFLVSEKSMKNLG--NLCAPYCSITLPESF-EL 117
LLG+VRIY++K +YL DC++A +K+ + + +L N A Y +ITLPE F +
Sbjct: 60 LLGVVRIYNRKAKYLLADCSEAFLKMK--MTFRPGLVDLPKENFEAAYNTITLPEEFHDF 117
Query: 118 DAF---DLEILEDISGENAVPLEQITLKD 143
D + D++I E ++ + P E+ITL++
Sbjct: 118 DIYNTNDIDISEPLAQNQSRP-EEITLRE 145
Score = 70 (29.7 bits), Expect = 6.3e-20, Sum P(2) = 6.3e-20
Identities = 28/113 (24%), Positives = 47/113 (41%)
Query: 673 DLASSKDEDFDLIFMN--EESNFGEVDRQESYGFSARTRMVAKYLHRRFLCHKERREDEA 730
++ S E F L+ + +E++ E+ ES G T K+ R F E RE
Sbjct: 437 EMISPAAEGFSLVSASSAQENHPAEL---ESSGSKQNTE-AEKWNQRLFQTLNELREFNK 492
Query: 731 I-----KLLPLLEGRTVKETARIFYEILVLQTKGIVNVKQDDAYGDILVVKAP 778
+ L+ L K+ A FY +L+L+ + + Q Y D++ P
Sbjct: 493 MGMQFFSLIKLCRNSDRKQAAAKFYTLLILKKHRAIELSQSAPYADVIATVGP 545
>ZFIN|ZDB-GENE-061103-505 [details] [associations]
symbol:rad21l1 "RAD21-like 1 (S. pombe)"
species:7955 "Danio rerio" [GO:0000228 "nuclear chromosome"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825
ZFIN:ZDB-GENE-061103-505 GO:GO:0000228 eggNOG:NOG249424
GeneTree:ENSGT00390000011606 HOGENOM:HOG000233800
HOVERGEN:HBG059956 Gene3D:1.10.10.580 InterPro:IPR023093 CTD:642636
EMBL:CU467960 EMBL:BC125933 IPI:IPI00771566 RefSeq:NP_001073519.1
UniGene:Dr.84879 Ensembl:ENSDART00000079631 GeneID:571082
KEGG:dre:571082 InParanoid:A0JMM5 OMA:TLKEDFG OrthoDB:EOG4GB773
NextBio:20890409 Uniprot:A0JMM5
Length = 546
Score = 246 (91.7 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 92/328 (28%), Positives = 153/328 (46%)
Query: 1 MFYSRSLLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEELDVMTYRVLAYL 60
MFY++ S++G L IW+AA+ K++ KA VFE ++ +++ EIL ++ + R +L
Sbjct: 1 MFYAQLFTSKRGTLAKIWLAAHWEKKITKAHVFECDLETTIKEILSPQIKI-GLRTSGHL 59
Query: 61 LLGLVRIYSKKVEYLFDDCNDAVVKIN-NFLVSEKSMKNLGNLCAPYCSITLPESF-ELD 118
LLG+VRIYS+K YL DC+DA+VKI F + + + + A +ITLPE F + D
Sbjct: 60 LLGVVRIYSRKTRYLLADCSDALVKIKVAFRPGQTDLPD-DAMEATLKTITLPEDFTDFD 118
Query: 119 AF--DLEILE--DISGENAVPLEQITLKDGASAAAGKGHYSLSKYCCKEYAAWDDSFSGD 174
+ DL ++ D N E ITLK+ G SL + +E ++ F
Sbjct: 119 SQLPDLNTIDVVDHFSLNQCRTEDITLKENF----GNLFLSLERIG-EEMQSYQGLFDQS 173
Query: 175 YSPADDIFSSHLMEIGMVVSATYSNLNANMENLQSN-NDGGVTE-PIEPVGEKHQTNEDM 232
+S D F M + ++ N + L S+ N + E P P E
Sbjct: 174 FSVHGDCFGDEEMAVDLIDIIA----NTAEDTLMSDFNGNSINELPATPPPTAVNAVEPE 229
Query: 233 KAAETAQSEKRLEKLQDNSFHGVEEE--SLDPIKL--CGKDHRSDGEQTMVPDIA-QLEK 287
K + E+ + + +F E+E +L P+ C R ++ +V D + QL
Sbjct: 230 KPETSCLKERSSPDVTETTFLVNEDEGFALAPVSATPCSAKKRKVRKRKLVIDRSKQLTN 289
Query: 288 ETCQATSKDINKNITMLQAS--TEKLCE 313
+ D + ++ L+ + T +L E
Sbjct: 290 SAIRDQLADCSDILSPLEIAPPTRQLME 317
Score = 67 (28.6 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 27/133 (20%), Positives = 55/133 (41%)
Query: 650 ETPENAHSIAVETLADSYATPKKDLASSKDEDFDL----IFMNEESNFGEVDRQESYGFS 705
E P + +S L SY P+ ++++ ++ + +S G D ++ +
Sbjct: 415 EPPPSWNSTIESRLEVSYPEPQSEISTLSHPSVEMRETPLVTKTQSVLGSQDLEDRR-MT 473
Query: 706 ARTRMVAKYLHRRFLCHKERREDEAIKLLPLLEGRTVKETARIFYEILVLQTKGIVNVKQ 765
+R + + L + + D L L E + A +F+ +LVL+ + +N+ Q
Sbjct: 474 SRAHDLLQALKSQ-----DSSPDAVYSLHALCESGSRSYVAALFFCMLVLRKQQFLNLHQ 528
Query: 766 DDAYGDILVVKAP 778
Y DI+ P
Sbjct: 529 SAPYSDIIATPGP 541
>POMBASE|SPCC338.17c [details] [associations]
symbol:rad21 "mitotic cohesin complex, non-SMC subunit
Rad21 (kleisin)" species:4896 "Schizosaccharomyces pombe"
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IGI] [GO:0000775 "chromosome, centromeric
region" evidence=IEA] [GO:0000794 "condensed nuclear chromosome"
evidence=IC] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006302 "double-strand
break repair" evidence=IMP] [GO:0007064 "mitotic sister chromatid
cohesion" evidence=IMP] [GO:0008608 "attachment of spindle
microtubules to kinetochore" evidence=IMP] [GO:0030892 "mitotic
cohesin complex" evidence=IDA] InterPro:IPR006909
InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825 PomBase:SPCC338.17c
GO:GO:0000775 GO:GO:0051301 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0000724 GO:GO:0000794 GO:GO:0008608 GO:GO:0007064
GO:GO:0030892 eggNOG:NOG249424 KO:K06670 Gene3D:1.10.10.580
InterPro:IPR023093 EMBL:M96437 PIR:S35547 RefSeq:NP_588151.1
ProteinModelPortal:P30776 IntAct:P30776 STRING:P30776
EnsemblFungi:SPCC338.17c.1 GeneID:2539447 KEGG:spo:SPCC338.17c
OMA:VEACNTI OrthoDB:EOG4C2MKJ NextBio:20800609 PMAP-CutDB:P30776
Uniprot:P30776
Length = 628
Score = 216 (81.1 bits), Expect = 1.4e-19, Sum P(2) = 1.4e-19
Identities = 40/86 (46%), Positives = 59/86 (68%)
Query: 1 MFYSRSLLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEELDVMTYRVLAYL 60
MFYS ++LS+KGPL +W+AA+ K+L K Q T+I SV I+ EE M R+ L
Sbjct: 1 MFYSEAILSKKGPLAKVWLAAHWEKKLSKVQTLHTSIEQSVHAIVTEETAPMALRLSGQL 60
Query: 61 LLGLVRIYSKKVEYLFDDCNDAVVKI 86
+LG+VRIYS+K YL +DC +A++++
Sbjct: 61 MLGVVRIYSRKARYLLEDCTEALMRL 86
Score = 101 (40.6 bits), Expect = 1.4e-19, Sum P(2) = 1.4e-19
Identities = 48/185 (25%), Positives = 80/185 (43%)
Query: 598 SSEKMAVAPATPTGRSSETMAIAP--DTLTVKSSELIAMTIESPIFLSVPSRSFETPENA 655
S E++ A T S+E A D + ++EL +T E+ I ++P + PE
Sbjct: 444 SPEEVEPAKHQRTDTSTENQETAEVLDPEEIAAAELANIT-EAAI-ATLPQETVVQPEGE 501
Query: 656 HSIAVETLADSYATPKKDLASSKDEDFDL--IFMNEESNFGEVDRQESYGFSARTRMVAK 713
A E L P L S+ D FD + ++E G S + + AK
Sbjct: 502 ---APE-LGSPMGFPVTALESADDSLFDAPPVMLDEADLLGSERLDSSVSEALPSSQTAK 557
Query: 714 -YLHRRFLCHKERREDEAIKLLPLLEGRTVKETARIFYEILVLQTKGIVNVKQDDAYGDI 772
L ++ E E + L G +E ++F+++LVL TK +++VKQD A +
Sbjct: 558 DSLRNKW---DPYTEGEKVSFQTLSAGCNREEAVQLFFDVLVLATKDVISVKQDVAIQNE 614
Query: 773 LVVKA 777
+ + A
Sbjct: 615 ITLTA 619
>UNIPROTKB|E5RJK5 [details] [associations]
symbol:RAD21 "Double-strand-break repair protein rad21
homolog" species:9606 "Homo sapiens" [GO:0034991 "nuclear meiotic
cohesin complex" evidence=IEA] InterPro:IPR006910 Pfam:PF04825
HGNC:HGNC:9811 ChiTaRS:RAD21 EMBL:AC087350 IPI:IPI00984166
Ensembl:ENST00000519837 ArrayExpress:E5RJK5 Bgee:E5RJK5
Uniprot:E5RJK5
Length = 124
Score = 239 (89.2 bits), Expect = 4.8e-19, P = 4.8e-19
Identities = 58/130 (44%), Positives = 82/130 (63%)
Query: 1 MFYSRSLLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEELDVMTYRVLAYL 60
MFY+ +LS++GPL IW+AA+ K+L KA VFE N+ SSV+ I+ ++ M R +L
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVK-MALRTSGHL 59
Query: 61 LLGLVRIYSKKVEYLFDDCNDAVVKINNFLVSEKSMKNLG--NLCAPYCSITLPESFELD 118
LLG+VRIY +K +YL DCN+A +KI + + +L N A Y +ITLPE F D
Sbjct: 60 LLGVVRIYHRKAKYLLADCNEAFIKIK--MAFRPGVVDLPEENREAAYNAITLPEEFH-D 116
Query: 119 AFDLEILEDI 128
FD + L D+
Sbjct: 117 -FD-QPLPDL 124
>WB|WBGene00004737 [details] [associations]
symbol:scc-1 species:6239 "Caenorhabditis elegans"
[GO:0000228 "nuclear chromosome" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0045132 "meiotic
chromosome segregation" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040002 "collagen
and cuticulin-based cuticle development" evidence=IMP] [GO:0007126
"meiosis" evidence=IMP] [GO:0007130 "synaptonemal complex assembly"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0003684
"damaged DNA binding" evidence=ISS] [GO:0008278 "cohesin complex"
evidence=IPI] InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824
Pfam:PF04825 GO:GO:0005634 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0003684 GO:GO:0040011 GO:GO:0040035
GO:GO:0045132 GO:GO:0040002 EMBL:FO081114 GO:GO:0000228
GO:GO:0007130 GO:GO:0008278 eggNOG:NOG249424
GeneTree:ENSGT00390000011606 Gene3D:1.10.10.580 InterPro:IPR023093
PIR:G88130 RefSeq:NP_494836.1 ProteinModelPortal:Q19325 SMR:Q19325
DIP:DIP-24317N IntAct:Q19325 MINT:MINT-226784 STRING:Q19325
PaxDb:Q19325 EnsemblMetazoa:F10G7.4 GeneID:173808
KEGG:cel:CELE_F10G7.4 UCSC:F10G7.4 CTD:173808 WormBase:F10G7.4
HOGENOM:HOG000017446 InParanoid:Q19325 NextBio:881199
Uniprot:Q19325
Length = 645
Score = 235 (87.8 bits), Expect = 5.8e-19, Sum P(3) = 5.8e-19
Identities = 58/154 (37%), Positives = 95/154 (61%)
Query: 1 MFYSRSLLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEELDVMTYRVLAYL 60
MFY++ +L++KGPL +W+AA+ K+L KAQ+FET++P +++E++ ++ M R + +L
Sbjct: 1 MFYAQFVLAKKGPLAKVWLAAHWEKKLTKAQIFETDVPQAIEEVIRPKVK-MALRTVGHL 59
Query: 61 LLGLVRIYSKKVEYLFDDCNDAV--VKIN-----NFLVS--EKSM--KNLGNLCAPYCSI 109
LLG+VRIYSKK YL D N+A +KIN +F V E + ++ N Y +I
Sbjct: 60 LLGIVRIYSKKTRYLLADTNEAYQKMKINFRNGFSFEVDIPENAEIEEDFSNFIDKY-NI 118
Query: 110 TLPESFELDAFDLEILEDISGENAVPLEQITLKD 143
T+PE + D + I+ ++S E IT+K+
Sbjct: 119 TVPEFHDADYNEQLIMANVSRR-----EDITMKE 147
Score = 65 (27.9 bits), Expect = 5.8e-19, Sum P(3) = 5.8e-19
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 743 KETARIFYEILVLQTKGIVNVKQDDAYGDILVVKAPWWDQSC 784
K+ A FY +L L ++V Q + YG+I++ + ++C
Sbjct: 578 KQAAEQFYSLLTLAKSQAISVDQSEPYGEIVIRPGANFKEAC 619
Score = 53 (23.7 bits), Expect = 5.8e-19, Sum P(3) = 5.8e-19
Identities = 44/193 (22%), Positives = 78/193 (40%)
Query: 200 LNANMENLQSNNDGGVTEPIEPVGEK-HQTNEDMKAAETAQSEKRLEKLQDNSFHGVEEE 258
+N +EN NDGGV P + H E A Q++ + D + E E
Sbjct: 243 MNLKVENQTLENDGGVG-PADMFSSMIHPVREH--AVADVQNDDGM----DFDYQPFEPE 295
Query: 259 SLDPIKLCGKDHRSDGEQTMVP-DIAQLE--KETCQATSKDINKNITMLQASTEKLCEHE 315
+++P + +S + P D+ +E K+ + K I TM+ + + +
Sbjct: 296 NVEPSR-----PQSPESFALEPLDVEHMEGRKKRQRKARKLIVDAETMISNDAFREQQED 350
Query: 316 VPQVCSGVEMCYGSKEELPKQVELSGEEHHSNTE---QMKVMEISSRNNECQVMKREDPL 372
VEM +++ + +SG+ H + E +M E+ R C V RE L
Sbjct: 351 FSDTMRVVEMAPPTRKMF--NLCVSGDLQHLSREPGCKMFNRELLQRYRRCLVT-REFDL 407
Query: 373 SVTV-DATPQSKF 384
+ T+ + + S F
Sbjct: 408 NYTMQELSDSSSF 420
Score = 48 (22.0 bits), Expect = 1.9e-18, Sum P(3) = 1.9e-18
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 408 RISRKRKCCFDDVTVFPNDVMRQCIQDASDLVSKRRKVPRT 448
R + RK D T+ ND R+ +D SD + P T
Sbjct: 324 RQRKARKLIVDAETMISNDAFREQQEDFSDTMRVVEMAPPT 364
>UNIPROTKB|E5RJW1 [details] [associations]
symbol:RAD21 "Double-strand-break repair protein rad21
homolog" species:9606 "Homo sapiens" [GO:0034991 "nuclear meiotic
cohesin complex" evidence=IEA] InterPro:IPR006910 Pfam:PF04825
HGNC:HGNC:9811 ChiTaRS:RAD21 EMBL:AC087350 IPI:IPI00981513
Ensembl:ENST00000522699 ArrayExpress:E5RJW1 Bgee:E5RJW1
Uniprot:E5RJW1
Length = 120
Score = 238 (88.8 bits), Expect = 6.1e-19, P = 6.1e-19
Identities = 53/117 (45%), Positives = 75/117 (64%)
Query: 1 MFYSRSLLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEELDVMTYRVLAYL 60
MFY+ +LS++GPL IW+AA+ K+L KA VFE N+ SSV+ I+ ++ M R +L
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVK-MALRTSGHL 59
Query: 61 LLGLVRIYSKKVEYLFDDCNDAVVKINNFLVSEKSMKNLG--NLCAPYCSITLPESF 115
LLG+VRIY +K +YL DCN+A +KI + + +L N A Y +ITLPE F
Sbjct: 60 LLGVVRIYHRKAKYLLADCNEAFIKIK--MAFRPGVVDLPEENREAAYNAITLPEEF 114
>UNIPROTKB|Q9H4I0 [details] [associations]
symbol:RAD21L1 "Double-strand-break repair protein
rad21-like protein 1" species:9606 "Homo sapiens" [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0000800 "lateral
element" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0007129 "synapsis" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0070197 "attachment of
telomeric heterochromatin to nuclear envelope" evidence=IEA]
[GO:0030893 "meiotic cohesin complex" evidence=ISS] [GO:0005694
"chromosome" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0007128 "meiotic prophase I" evidence=ISS] InterPro:IPR006909
InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825 GO:GO:0005634
GO:GO:0007059 GO:GO:0000228 GO:GO:0007128 EMBL:AL136531
GO:GO:0030893 EMBL:AL031665 HOGENOM:HOG000233800 HOVERGEN:HBG059956
Gene3D:1.10.10.580 InterPro:IPR023093 CTD:642636 EMBL:BC157891
EMBL:BC171911 IPI:IPI00878979 IPI:IPI00916789 RefSeq:NP_001130038.2
UniGene:Hs.713451 ProteinModelPortal:Q9H4I0 SMR:Q9H4I0
PhosphoSite:Q9H4I0 DMDM:259016327 PaxDb:Q9H4I0 PRIDE:Q9H4I0
Ensembl:ENST00000381882 Ensembl:ENST00000402452
Ensembl:ENST00000409241 GeneID:642636 KEGG:hsa:642636
UCSC:uc010gab.1 GeneCards:GC20P001206 HGNC:HGNC:16271 HPA:HPA053282
neXtProt:NX_Q9H4I0 PharmGKB:PA34171 eggNOG:NOG301899 OMA:GMQSFSL
OrthoDB:EOG49S67J NextBio:114018 ArrayExpress:Q9H4I0 Bgee:Q9H4I0
Genevestigator:Q9H4I0 Uniprot:Q9H4I0
Length = 556
Score = 237 (88.5 bits), Expect = 2.2e-18, Sum P(2) = 2.2e-18
Identities = 56/148 (37%), Positives = 91/148 (61%)
Query: 1 MFYSRSLLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEELDVMTYRVLAYL 60
MFY+ L+S++GPL IW+AA+ K+L KA VFE N+ ++++IL ++ + R +L
Sbjct: 1 MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIEKILSPKVKI-ALRTSGHL 59
Query: 61 LLGLVRIYSKKVEYLFDDCNDAVVKIN-NFLVSEKSMKNLGNLCAPYCSITLPESF-ELD 118
LLG+VRIY++K +YL DC++A +K+ F + N A Y +ITLPE F + D
Sbjct: 60 LLGVVRIYNRKAKYLLADCSEAFLKMKMTFCPGLVDLPK-ENFEASYNAITLPEEFHDFD 118
Query: 119 AFDLEILEDISG---ENAVPLEQITLKD 143
++ + D+S +N E+ITL++
Sbjct: 119 TQNMNAI-DVSEHFTQNQSRPEEITLRE 145
Score = 65 (27.9 bits), Expect = 2.2e-18, Sum P(2) = 2.2e-18
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 729 EAIKLLPLLEGRTVKETARIFYEILVLQTKGIVNVKQDDAYGDILVVKAP 778
++ L+ L K+ A FY LVL+ + + + Q Y DI+ P
Sbjct: 502 QSFSLMKLCRNSDRKQAAAKFYSFLVLKKQLAIELSQSAPYADIIATMGP 551
>UNIPROTKB|E1BTU9 [details] [associations]
symbol:RAD21L1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000800 "lateral element" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0007128
"meiotic prophase I" evidence=IEA] [GO:0007129 "synapsis"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0030893 "meiotic cohesin complex" evidence=IEA] [GO:0070197
"attachment of telomeric heterochromatin to nuclear envelope"
evidence=IEA] InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824
Pfam:PF04825 GO:GO:0000228 GO:GO:0007128 GO:GO:0030893
GeneTree:ENSGT00390000011606 Gene3D:1.10.10.580 InterPro:IPR023093
EMBL:AADN02019132 IPI:IPI00819464 Ensembl:ENSGALT00000039400
OMA:EITHVCI Uniprot:E1BTU9
Length = 630
Score = 235 (87.8 bits), Expect = 3.9e-18, Sum P(2) = 3.9e-18
Identities = 92/321 (28%), Positives = 148/321 (46%)
Query: 1 MFYSRSLLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEELDVMTYRVLAYL 60
MFY L++R+GPL IW+AA+ K+L KA +FE N+ +++ +I+ + + R +L
Sbjct: 1 MFYMHLLVNRRGPLAKIWLAAHWEKKLTKAHIFECNLEATIKKIVSPKFTI-ALRTSGHL 59
Query: 61 LLGLVRIYSKKVEYLFDDCNDAVVKINNFLVSEKSMKNLGN-LC-APYCSITLPESFELD 118
LLG+VRIY +K +YL DC++A+ K+ + +L C A Y SITLPE F
Sbjct: 60 LLGVVRIYHRKTKYLLSDCSEALTKMKTAF--RPGLVDLPEESCEAAYQSITLPEEFH-- 115
Query: 119 AFDLEI-LEDISGENAVPL-EQITLKDG-ASAAAGKGHYSLSKYCCKEYAAWDDSFSG-- 173
D E L D+ NA+ + E TL A K Y + C D +F
Sbjct: 116 --DFETTLPDL---NAIDVAEHFTLNQSRAEDITLKEDYESNVLLC------DRNFGERR 164
Query: 174 DYSPADDIFSSHLMEIGMVVSATYSNLNANMENLQSNNDGGVTEPIEPVGEKHQTNEDMK 233
Y +D + ++ +++S+ NL A+ + + D E+ ++
Sbjct: 165 KYEESDALRKQSFFDVSVLMSSC--NLVADHSSASVSGDKPALHESSYCLEQDCFGDEEA 222
Query: 234 AAETAQSEKRLEKLQDNSFHGV--EEESLDPIKLCGKDHRSDGEQTMVPDIAQLE---KE 288
A+ + R E Q+ +G+ EE L P+ +++ +DGE P A E +
Sbjct: 223 GADMIEILLRDE--QNGLTNGILDMEEEL-PMSQDLQENSTDGELAAPPPPASSEFNHAD 279
Query: 289 TCQATSKDINKNITMLQASTE 309
T T + N TML E
Sbjct: 280 TAVKTESHL-MNETMLLPKEE 299
Score = 67 (28.6 bits), Expect = 3.9e-18, Sum P(2) = 3.9e-18
Identities = 25/89 (28%), Positives = 39/89 (43%)
Query: 684 LIFMNEESNFGEVDRQESYGFSARTRMVAKYLHRRFLCHKERREDEAIKLLPLLEGRTVK 743
+I N+E D +E +S RT + K L + H + + L L + K
Sbjct: 536 IISQNKELEMENRDNEE-IKWSKRTLQLLKTLQQ----HLNKSGVNSFSLRELCRKNSRK 590
Query: 744 ETARIFYEILVLQTKGIVNVKQDDAYGDI 772
E A FY LVLQ + +V + Q + D+
Sbjct: 591 EVAVKFYIFLVLQKQMVVELVQCAPFADV 619
>MGI|MGI:3652039 [details] [associations]
symbol:Rad21l "RAD21-like (S. pombe)" species:10090 "Mus
musculus" [GO:0000228 "nuclear chromosome" evidence=IEA]
[GO:0000800 "lateral element" evidence=IDA] [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005694 "chromosome" evidence=IDA] [GO:0006302
"double-strand break repair" evidence=IMP] [GO:0007059 "chromosome
segregation" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
[GO:0007129 "synapsis" evidence=IMP] [GO:0007283 "spermatogenesis"
evidence=IMP] [GO:0030893 "meiotic cohesin complex" evidence=IDA]
[GO:0070197 "attachment of telomeric heterochromatin to nuclear
envelope" evidence=IMP] InterPro:IPR006909 InterPro:IPR006910
Pfam:PF04824 Pfam:PF04825 MGI:MGI:3652039 GO:GO:0007059
GO:GO:0007283 GO:GO:0006302 GO:GO:0000800 GO:GO:0007129
GO:GO:0007128 GO:GO:0070197 GO:GO:0030893
GeneTree:ENSGT00390000011606 HOGENOM:HOG000233800
HOVERGEN:HBG059956 Gene3D:1.10.10.580 InterPro:IPR023093
eggNOG:NOG301899 OMA:GMQSFSL OrthoDB:EOG49S67J EMBL:HQ603828
EMBL:AB602048 EMBL:AB574185 EMBL:AL928988 IPI:IPI00752563
RefSeq:NP_001108149.1 UniGene:Mm.473683 ProteinModelPortal:A2AU37
PhosphoSite:A2AU37 PRIDE:A2AU37 Ensembl:ENSMUST00000096439
Ensembl:ENSMUST00000180195 GeneID:668929 KEGG:mmu:668929
UCSC:uc012cfx.1 CTD:668929 InParanoid:A2AU37 NextBio:435965
Genevestigator:A2AU37 Uniprot:A2AU37
Length = 552
Score = 238 (88.8 bits), Expect = 7.0e-18, Sum P(2) = 7.0e-18
Identities = 54/149 (36%), Positives = 94/149 (63%)
Query: 1 MFYSRSLLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEELDVMTYRVLAYL 60
MFY+ L+S++GPL IW+AA+ K+L KA VFE N+ ++ +I+ ++ + R +L
Sbjct: 1 MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIQKIISPKVKI-ALRTSGHL 59
Query: 61 LLGLVRIYSKKVEYLFDDCNDAVVKINNFLVSEKSMKNLG--NLCAPYCSITLPESF-EL 117
LLG+VRIY++K +YL DC++A +K+ + + +L N A Y +ITLPE F +
Sbjct: 60 LLGVVRIYNRKAKYLLADCSEAFLKMK--MTFRPGLVDLPKENFEAAYNTITLPEEFHDF 117
Query: 118 DAF---DLEILEDISGENAVPLEQITLKD 143
+ + +++I E ++ + P E+ITL++
Sbjct: 118 EIYNINEIDISEPLAQNQSRP-EEITLRE 145
Score = 59 (25.8 bits), Expect = 7.0e-18, Sum P(2) = 7.0e-18
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 729 EAIKLLPLLEGRTVKETARIFYEILVLQTKGIVNVKQDDAYGDILVVKAP 778
++ L L K+ A FY +L+L+ + + Q Y DI+ P
Sbjct: 498 QSFSLKKLCRNSDRKQAAAKFYTLLILKKHRAIELSQSVPYADIIATVGP 547
>UNIPROTKB|E1C938 [details] [associations]
symbol:RAD21L1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000228 "nuclear chromosome" evidence=IEA]
InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825
GO:GO:0000228 GeneTree:ENSGT00390000011606 Gene3D:1.10.10.580
InterPro:IPR023093 EMBL:AADN02019132 IPI:IPI00584752
Ensembl:ENSGALT00000009982 Uniprot:E1C938
Length = 602
Score = 230 (86.0 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 91/318 (28%), Positives = 146/318 (45%)
Query: 1 MFYSRSLLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEELDVMTYRVLAYL 60
MFY L++R+GPL IW+AA+ K+L KA +FE N+ +++ +I+ + + R +L
Sbjct: 1 MFYMHLLVNRRGPLAKIWLAAHWEKKLTKAHIFECNLEATIKKIVSPKFTI-ALRTSGHL 59
Query: 61 LLGLVRIYSKKVEYLFDDCNDAVVKINNFLVSEKSMKNLGN-LC-APYCSITLPESFELD 118
LLG+VRIY +K +YL DC++A+ K+ + +L C A Y SITLPE F
Sbjct: 60 LLGVVRIYHRKTKYLLSDCSEALTKMKTAF--RPGLVDLPEESCEAAYQSITLPEEFH-- 115
Query: 119 AFDLEI-LEDISGENAVPL-EQITLKDG-ASAAAGKGHYSLSKYCCKEYAAWDDSFSG-- 173
D E L D+ NA+ + E TL A K Y + C D +F
Sbjct: 116 --DFETTLPDL---NAIDVAEHFTLNQSRAEDITLKEDYESNVLLC------DRNFGERR 164
Query: 174 DYSPADDIFSSHLMEIGMVVSATYSNLNANMENLQSNNDGGVTEPIEPVGEKHQTNEDMK 233
Y +D + ++ +++S+ NL A+ + + D E+ ++
Sbjct: 165 KYEESDALRKQSFFDVSVLMSSC--NLVADHSSASVSGDKPALHESSYCLEQDCFGDEEA 222
Query: 234 AAETAQSEKRLEKLQDNSFHGV--EEESLDPIKLCGKDHRSDGEQTMVPDIAQLEKETCQ 291
A+ + R E Q+ +G+ EE L P+ +++ +DGE P A T
Sbjct: 223 GADMIEILLRDE--QNGLTNGILDMEEEL-PMSQDLQENSTDGELAAPPPPASY---TAV 276
Query: 292 ATSKDINKNITMLQASTE 309
T + N TML E
Sbjct: 277 KTESHL-MNETMLLPKEE 293
Score = 67 (28.6 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 25/89 (28%), Positives = 39/89 (43%)
Query: 684 LIFMNEESNFGEVDRQESYGFSARTRMVAKYLHRRFLCHKERREDEAIKLLPLLEGRTVK 743
+I N+E D +E +S RT + K L + H + + L L + K
Sbjct: 508 IISQNKELEMENRDNEE-IKWSKRTLQLLKTLQQ----HLNKSGVNSFSLRELCRKNSRK 562
Query: 744 ETARIFYEILVLQTKGIVNVKQDDAYGDI 772
E A FY LVLQ + +V + Q + D+
Sbjct: 563 EVAVKFYIFLVLQKQMVVELVQCAPFADV 591
>UNIPROTKB|E1BTV6 [details] [associations]
symbol:RAD21L1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000228 "nuclear chromosome" evidence=IEA]
InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825
GO:GO:0000228 GeneTree:ENSGT00390000011606 Gene3D:1.10.10.580
InterPro:IPR023093 EMBL:AADN02019132 IPI:IPI00818854
Ensembl:ENSGALT00000039396 Uniprot:E1BTV6
Length = 613
Score = 230 (86.0 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
Identities = 91/318 (28%), Positives = 146/318 (45%)
Query: 1 MFYSRSLLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEELDVMTYRVLAYL 60
MFY L++R+GPL IW+AA+ K+L KA +FE N+ +++ +I+ + + R +L
Sbjct: 1 MFYMHLLVNRRGPLAKIWLAAHWEKKLTKAHIFECNLEATIKKIVSPKFTI-ALRTSGHL 59
Query: 61 LLGLVRIYSKKVEYLFDDCNDAVVKINNFLVSEKSMKNLGN-LC-APYCSITLPESFELD 118
LLG+VRIY +K +YL DC++A+ K+ + +L C A Y SITLPE F
Sbjct: 60 LLGVVRIYHRKTKYLLSDCSEALTKMKTAF--RPGLVDLPEESCEAAYQSITLPEEFH-- 115
Query: 119 AFDLEI-LEDISGENAVPL-EQITLKDG-ASAAAGKGHYSLSKYCCKEYAAWDDSFSG-- 173
D E L D+ NA+ + E TL A K Y + C D +F
Sbjct: 116 --DFETTLPDL---NAIDVAEHFTLNQSRAEDITLKEDYESNVLLC------DRNFGERR 164
Query: 174 DYSPADDIFSSHLMEIGMVVSATYSNLNANMENLQSNNDGGVTEPIEPVGEKHQTNEDMK 233
Y +D + ++ +++S+ NL A+ + + D E+ ++
Sbjct: 165 KYEESDALRKQSFFDVSVLMSSC--NLVADHSSASVSGDKPALHESSYCLEQDCFGDEEA 222
Query: 234 AAETAQSEKRLEKLQDNSFHGV--EEESLDPIKLCGKDHRSDGEQTMVPDIAQLEKETCQ 291
A+ + R E Q+ +G+ EE L P+ +++ +DGE P A T
Sbjct: 223 GADMIEILLRDE--QNGLTNGILDMEEEL-PMSQDLQENSTDGELAAPPPPASY---TAV 276
Query: 292 ATSKDINKNITMLQASTE 309
T + N TML E
Sbjct: 277 KTESHL-MNETMLLPKEE 293
Score = 67 (28.6 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
Identities = 25/89 (28%), Positives = 39/89 (43%)
Query: 684 LIFMNEESNFGEVDRQESYGFSARTRMVAKYLHRRFLCHKERREDEAIKLLPLLEGRTVK 743
+I N+E D +E +S RT + K L + H + + L L + K
Sbjct: 519 IISQNKELEMENRDNEE-IKWSKRTLQLLKTLQQ----HLNKSGVNSFSLRELCRKNSRK 573
Query: 744 ETARIFYEILVLQTKGIVNVKQDDAYGDI 772
E A FY LVLQ + +V + Q + D+
Sbjct: 574 EVAVKFYIFLVLQKQMVVELVQCAPFADV 602
>WB|WBGene00000591 [details] [associations]
symbol:coh-1 species:6239 "Caenorhabditis elegans"
[GO:0000228 "nuclear chromosome" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0045132 "meiotic chromosome segregation" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0007126 "meiosis" evidence=IMP] [GO:0007130
"synaptonemal complex assembly" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0003684 "damaged DNA binding" evidence=ISS]
InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825
GO:GO:0005634 GO:GO:0009792 GO:GO:0040007 GO:GO:0002119
GO:GO:0003684 GO:GO:0040011 GO:GO:0045132 GO:GO:0000228
GO:GO:0007130 eggNOG:NOG249424 GeneTree:ENSGT00390000011606
KO:K06670 Gene3D:1.10.10.580 InterPro:IPR023093 EMBL:FO080256
PIR:T16582 RefSeq:NP_509262.1 ProteinModelPortal:Q21306 SMR:Q21306
STRING:Q21306 PaxDb:Q21306 EnsemblMetazoa:K08A8.3 GeneID:181003
KEGG:cel:CELE_K08A8.3 UCSC:K08A8.3 CTD:181003 WormBase:K08A8.3
HOGENOM:HOG000020951 InParanoid:Q21306 OMA:DIEQKEP NextBio:911936
Uniprot:Q21306
Length = 652
Score = 221 (82.9 bits), Expect = 1.4e-17, Sum P(3) = 1.4e-17
Identities = 55/145 (37%), Positives = 82/145 (56%)
Query: 1 MFYSRSLLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEELDVMTYRVLAYL 60
MFY+ +LS+KGPL +W+AA+ K+L KAQ+FET++ +V+EI++ + R +L
Sbjct: 56 MFYADFVLSKKGPLSKVWLAAHWEKKLSKAQIFETDVDEAVNEIMQPS-QKLALRTTGHL 114
Query: 61 LLGLVRIYSKKVEYLFDDCNDAVVKINNFLVSEKSMKNLGNLCAPYCSITLPESFELDAF 120
LLG+ R+YS+K +YL DCN+A +KI LV + N P SI + D
Sbjct: 115 LLGICRVYSRKTKYLLADCNEAFLKIK--LVFRSGALDQPNPVLPTFSI---QDIYGDFG 169
Query: 121 DLEILEDISGE--NAVPLEQITLKD 143
D +L + E N P+ Q L D
Sbjct: 170 D-NVLPEFDEEELNHAPICQSRLDD 193
Score = 77 (32.2 bits), Expect = 1.4e-17, Sum P(3) = 1.4e-17
Identities = 25/92 (27%), Positives = 44/92 (47%)
Query: 688 NEESNFGEVDRQESYGFSARTRMVAKYLHRRFLCHKERRE-DEAIKLLPLLEGRTVKETA 746
+EE E D E +S RT + + + + + E DE +K +G + K A
Sbjct: 561 DEEKEEPETD--EDNRWSKRTHALLQNIATKLENQNGQVELDEMLK-----KGTSRKVAA 613
Query: 747 RIFYEILVLQTKGIVNVKQDDAYGDILVVKAP 778
FY +L L+ ++++Q + YGDI++ P
Sbjct: 614 AKFYSLLCLKKNQCIDIEQKEPYGDIMIKAGP 645
Score = 43 (20.2 bits), Expect = 1.4e-17, Sum P(3) = 1.4e-17
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 411 RKRKCCFDDVTVFPNDVMRQCIQDASDLVSKRRKVP 446
RKR+ DDV + + M+ + D SD++++ P
Sbjct: 380 RKRRV--DDVKMITGEEMKGNMADFSDILTRLDLAP 413
>ASPGD|ASPL0000069046 [details] [associations]
symbol:AN7465 species:162425 "Emericella nidulans"
[GO:0003674 "molecular_function" evidence=ND] [GO:0000228 "nuclear
chromosome" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0007064 "mitotic
sister chromatid cohesion" evidence=IEA] [GO:0008608 "attachment of
spindle microtubules to kinetochore" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0030892 "mitotic cohesin complex"
evidence=IEA] InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824
Pfam:PF04825 EMBL:AACD01000129 EMBL:BN001304 GO:GO:0000228
eggNOG:NOG249424 KO:K06670 Gene3D:1.10.10.580 InterPro:IPR023093
OrthoDB:EOG4C2MKJ RefSeq:XP_680734.1 ProteinModelPortal:Q5AW65
STRING:Q5AW65 EnsemblFungi:CADANIAT00000558 GeneID:2869516
KEGG:ani:AN7465.2 HOGENOM:HOG000162683 OMA:DATKMFF Uniprot:Q5AW65
Length = 584
Score = 227 (85.0 bits), Expect = 2.2e-17, Sum P(2) = 2.2e-17
Identities = 50/122 (40%), Positives = 76/122 (62%)
Query: 1 MFYSRSLLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEELDVMTYRVLAYL 60
MFYS +LLS+ GPL +W++A ++L K+ + +++I SSV I+++ M R+ L
Sbjct: 1 MFYSETLLSKTGPLARVWLSANLERKLSKSHILQSDIESSVSAIVDQGQAPMALRLSGQL 60
Query: 61 LLGLVRIYSKKVEYLFDDCNDAVVKINN-FLVSEKSMKNLGNLCAPYCSITLPESF-ELD 118
LLG+VRIYS+K YL DDCN+A++KI F ++ + + AP ITLP+ E D
Sbjct: 61 LLGVVRIYSRKARYLLDDCNEALMKIKMAFRLTNNNDLTTSAVVAPG-GITLPDVLTEAD 119
Query: 119 AF 120
F
Sbjct: 120 LF 121
Score = 67 (28.6 bits), Expect = 2.2e-17, Sum P(2) = 2.2e-17
Identities = 20/67 (29%), Positives = 33/67 (49%)
Query: 721 CHKERREDEAIKLLPLLEGR--TVKETARIFYEILVLQTKGIVNVKQ-DDAYGDILVV-- 775
C + +A+K LL + T + ++F+E+LVL TK V V+Q + G + +
Sbjct: 501 CLGNAEQKKAVKFQDLLPEKKATRADATKMFFEVLVLATKDAVQVEQRSNTVGGPIKISG 560
Query: 776 KAPWWDQ 782
K W Q
Sbjct: 561 KRSLWGQ 567
>UNIPROTKB|F1S874 [details] [associations]
symbol:RAD21L1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070197 "attachment of telomeric heterochromatin to
nuclear envelope" evidence=IEA] [GO:0030893 "meiotic cohesin
complex" evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0007129 "synapsis" evidence=IEA] [GO:0007128 "meiotic prophase
I" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0000800 "lateral element" evidence=IEA]
InterPro:IPR006910 Pfam:PF04825 GO:GO:0005634 GO:GO:0007128
GO:GO:0030893 GeneTree:ENSGT00390000011606 OMA:GMQSFSL
EMBL:FP236274 Ensembl:ENSSSCT00000007870 Uniprot:F1S874
Length = 469
Score = 238 (88.8 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 59/178 (33%), Positives = 103/178 (57%)
Query: 1 MFYSRSLLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEELDVMTYRVLAYL 60
MFY+ L+S++GPL IW+AA+ K+L KA VFE N+ ++++IL ++ + R +L
Sbjct: 1 MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIEKILSPKVKI-ALRTSGHL 59
Query: 61 LLGLVRIYSKKVEYLFDDCNDAVVKINNFLVSEKSMKNLG--NLCAPYCSITLPESF-EL 117
LLG+VRIY++K +YL DC++A++K+ + + +L + A Y +ITLPE F +
Sbjct: 60 LLGVVRIYNRKAKYLLADCSEALLKMK--MTFRPGLVDLPKESFEATYTAITLPEEFHDF 117
Query: 118 DAFD---LEILEDISGENAVPLEQITLKD--GASAAAGKGHYSLSKYCCKEYAAWDDS 170
D + ++I E + + P E+I LK+ G G + + ++ +DD+
Sbjct: 118 DTQNVNAIDISEHFTPNQSKP-EEIPLKEDFGNDLLFPAGSFGEEAEILRRHSFFDDN 174
Score = 44 (20.5 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 13/48 (27%), Positives = 20/48 (41%)
Query: 408 RISRKRKCCFDDVTVFPNDVMRQCIQDASDLVSKRRKVPRTV-LAAWK 454
R +KRK D V + +M + + +D + P T L WK
Sbjct: 292 RKGKKRKLLIDPVKEISSKIMHRQLTSFTDTLMVLELAPPTQRLMMWK 339
Score = 37 (18.1 bits), Expect = 5.6e-16, Sum P(2) = 5.6e-16
Identities = 11/53 (20%), Positives = 20/53 (37%)
Query: 554 SEKMVVAPETPTGGSSEKMVVAPETPTCRSPEKRAFAPDTPTGRSSEKMAVAP 606
+ ++ + PE P +VV + P C P + +T E + P
Sbjct: 233 NREISLPPELPN-----TIVVESDNPECICPPENEKMDETTLSNEEEGFTLEP 280
>UNIPROTKB|G4MR40 [details] [associations]
symbol:MGG_09891 "Double-strand-break repair protein rad21"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR006909 InterPro:IPR006910
Pfam:PF04824 Pfam:PF04825 EMBL:CM001231 GO:GO:0043581 GO:GO:0000228
KO:K06670 Gene3D:1.10.10.580 InterPro:IPR023093
RefSeq:XP_003709984.1 EnsemblFungi:MGG_09891T0 GeneID:2680935
KEGG:mgr:MGG_09891 Uniprot:G4MR40
Length = 625
Score = 202 (76.2 bits), Expect = 5.8e-15, Sum P(3) = 5.8e-15
Identities = 51/145 (35%), Positives = 85/145 (58%)
Query: 1 MFYSRSLLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEELDV-MTYRVLAY 59
MFYS +LL GPL +W+AA ++L KA + ++N+ SV++I++ + + R+
Sbjct: 1 MFYSDTLLRTTGPLSRVWLAANMERKLSKAHILQSNLRHSVEQIIQPSEEAPLALRLSGQ 60
Query: 60 LLLGLVRIYSKKVEYLFDDCNDAVVKINNFLVSEKSMKNLGNLCAPYCSITLP--ESFEL 117
LLLG+VRIYS+K YL +DCN+A++KI + + ++ GN P ++ LP ES L
Sbjct: 61 LLLGVVRIYSRKARYLLEDCNEALMKI------KMAFRSSGNNDLP-TNLHLPNRESLML 113
Query: 118 -DAFDL-EILEDISGENAVPLEQIT 140
D + L+D+ E + + +T
Sbjct: 114 QDRITPHDNLDDLPPEPTLNFDDLT 138
Score = 71 (30.1 bits), Expect = 5.8e-15, Sum P(3) = 5.8e-15
Identities = 18/46 (39%), Positives = 29/46 (63%)
Query: 724 ERREDEAIKLLPLL-EGRTVKETA-RIFYEILVLQTKGIVNVKQDD 767
E+R++ ++ LL E RT K A ++F+E LVL TK + V+Q +
Sbjct: 531 EKRKNTSVVFQELLPETRTTKADATKMFFECLVLATKDAIKVEQPE 576
Score = 43 (20.2 bits), Expect = 5.8e-15, Sum P(3) = 5.8e-15
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 567 GSSEKMVVAPETPTCRSPEKRAFAPDTPT 595
G + + + P R+ ++RA PDT T
Sbjct: 312 GDDTERTITMKAPQ-RAKKRRAIVPDTDT 339
>TAIR|locus:2169667 [details] [associations]
symbol:SYN1 "SYNAPTIC 1" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISM] [GO:0007062 "sister chromatid cohesion"
evidence=RCA;IMP] [GO:0010032 "meiotic chromosome condensation"
evidence=IMP] [GO:0008278 "cohesin complex" evidence=ISS]
[GO:0005694 "chromosome" evidence=IDA] [GO:0006325 "chromatin
organization" evidence=IMP] [GO:0051455 "attachment of spindle
microtubules to kinetochore involved in homologous chromosome
segregation" evidence=IMP] [GO:0051754 "meiotic sister chromatid
cohesion, centromeric" evidence=IMP] [GO:0006302 "double-strand
break repair" evidence=RCA] [GO:0006312 "mitotic recombination"
evidence=RCA] [GO:0007129 "synapsis" evidence=RCA] [GO:0007131
"reciprocal meiotic recombination" evidence=RCA] [GO:0042138
"meiotic DNA double-strand break formation" evidence=RCA]
[GO:0045132 "meiotic chromosome segregation" evidence=RCA]
InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0051754 EMBL:AB005241
GO:GO:0006325 GO:GO:0000228 GO:GO:0051455 GO:GO:0008278
GO:GO:0010032 KO:K06670 Gene3D:1.10.10.580 InterPro:IPR023093
EMBL:AF080620 EMBL:AF080619 EMBL:AJ238306 IPI:IPI00517990
IPI:IPI00540220 PIR:T52571 RefSeq:NP_196168.1 RefSeq:NP_850773.1
UniGene:At.48986 UniGene:At.690 ProteinModelPortal:Q9S7T7
SMR:Q9S7T7 STRING:Q9S7T7 PRIDE:Q9S7T7 EnsemblPlants:AT5G05490.1
GeneID:830432 KEGG:ath:AT5G05490 GeneFarm:1768 TAIR:At5g05490
eggNOG:NOG252146 HOGENOM:HOG000083970 InParanoid:Q9S7T7 OMA:RLSGILM
PhylomeDB:Q9S7T7 ProtClustDB:CLSN2686639 Genevestigator:Q9S7T7
Uniprot:Q9S7T7
Length = 627
Score = 159 (61.0 bits), Expect = 1.3e-12, Sum P(3) = 1.3e-12
Identities = 42/122 (34%), Positives = 68/122 (55%)
Query: 6 SLLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEELDVMTYRVLAYLLLGLV 65
+LL+RK PLG IW+AA ++ + ++ + +I +EIL + M R+ L+ G+V
Sbjct: 16 TLLARKAPLGQIWMAATLHAKINRKKLDKLDIIQICEEILNPSVP-MALRLSGILMGGVV 74
Query: 66 RIYSKKVEYLFDDCNDAVVKINNFL----VSEKSMKNLGNLCAPYCSITLPESFELDAFD 121
+Y +KV+ LFDD N +V+IN V + ++ G A ++TLPE+ E D D
Sbjct: 75 IVYERKVKLLFDDVNRFLVEINGAWRTKSVPDPTLLPKGKTHARKEAVTLPENEEADFGD 134
Query: 122 LE 123
E
Sbjct: 135 FE 136
Score = 90 (36.7 bits), Expect = 1.3e-12, Sum P(3) = 1.3e-12
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 736 LLEGRTVKETARIFYEILVLQTKGIVNVKQDDAYGDILVVKAP 778
L G A++F++ VL T+G++ V Q + YGDIL+ + P
Sbjct: 583 LAVGMDRNAAAKLFFQSCVLATRGVIKVNQAEPYGDILIARGP 625
Score = 47 (21.6 bits), Expect = 1.3e-12, Sum P(3) = 1.3e-12
Identities = 16/63 (25%), Positives = 32/63 (50%)
Query: 401 PATKECARISRKRKCCFDDVTVFPNDVMRQCIQDASDLVSK--RRKVPRTVLAAWKASRI 458
PA K AR + ++ T+ V + +QD SD++ + +RKV T+ ++ +
Sbjct: 283 PAKKR-ARKTATSAMDYEQ-TIIAGHVYQSWLQDTSDILCRGEKRKVRGTIRPDMESFKR 340
Query: 459 SNL 461
+N+
Sbjct: 341 ANM 343
>DICTYBASE|DDB_G0276977 [details] [associations]
symbol:rad21 "cohesin subunit" species:44689
"Dictyostelium discoideum" [GO:0000228 "nuclear chromosome"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825
dictyBase:DDB_G0276977 EMBL:AAFI02000019 GO:GO:0000228
eggNOG:NOG249424 KO:K06670 Gene3D:1.10.10.580 InterPro:IPR023093
RefSeq:XP_642955.1 ProteinModelPortal:Q550H7 PRIDE:Q550H7
GeneID:8620824 KEGG:ddi:DDB_G0276977 InParanoid:Q550H7
Uniprot:Q550H7
Length = 821
Score = 181 (68.8 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 43/99 (43%), Positives = 64/99 (64%)
Query: 1 MFYSRSLLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVD---EI-------LEEELD 50
MF+S+ +L+++G LG IW+A + K+L K VF+TNIP SV EI +E L+
Sbjct: 1 MFFSQIVLAKRGALGKIWLAGHWDKKLAKNVVFKTNIPKSVKINKEINKKKKKKIETILN 60
Query: 51 V---MTYRVLAYLLLGLVRIYSKKVEYLFDDCNDAVVKI 86
M R+ ++LLLG+ RI+SKK +YL DC +AV+K+
Sbjct: 61 PHSPMALRMTSHLLLGVARIFSKKAKYLLSDCTEAVIKL 99
Score = 64 (27.6 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 749 FYEILVLQTKGIVNVKQDD----AYGDILVVK 776
FYE+LVL+TK +VN++Q + Y DI + K
Sbjct: 773 FYELLVLKTKVLVNLEQPENDTETYPDIKISK 804
>CGD|CAL0000863 [details] [associations]
symbol:MCD1 species:5476 "Candida albicans" [GO:0034990
"nuclear mitotic cohesin complex" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0006302 "double-strand break
repair" evidence=IEA] [GO:0034087 "establishment of mitotic sister
chromatid cohesion" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0007076 "mitotic chromosome condensation"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825
CGD:CAL0000863 EMBL:AACQ01000032 GO:GO:0000228 eggNOG:NOG249424
KO:K06670 Gene3D:1.10.10.580 InterPro:IPR023093 RefSeq:XP_719394.1
ProteinModelPortal:Q5ACK9 STRING:Q5ACK9 GeneID:3639044
KEGG:cal:CaO19.7634 Uniprot:Q5ACK9
Length = 564
Score = 146 (56.5 bits), Expect = 1.7e-11, Sum P(3) = 1.7e-11
Identities = 84/338 (24%), Positives = 145/338 (42%)
Query: 35 TNIPSSVDEILEEELD---VMTYRVLAYLLLGLVRIYSKKVEYLFDDCNDAVVKIN-NFL 90
TN+ SV + L +LD +T R+ LLLG+VRIYS+K EYL DD ND + K+ +F
Sbjct: 50 TNV--SVSQELPSDLDSTNTITLRLSGQLLLGIVRIYSRKTEYLLDDVNDILYKLKASFK 107
Query: 91 VSEKSMKNLGNLCAPYCSITLP-ESFELDAFDLEILED-ISGENAVPLEQITLKD--GAS 146
+S S NLG+ + LP E L + IL+D ++ N + + + L D G S
Sbjct: 108 LS--SGVNLGSDNISN-QVNLPREQTILQNLNSIILKDQVTSANLLQQDDLDLSDIHGTS 164
Query: 147 AAAG-KG--HYSLSKYCCKEYAAWDDSFSGDYSPADDIFSSHLMEIGMVVSATYSNLNAN 203
+G G +++ S+ EY+ +D+S + H + + +LN +
Sbjct: 165 TGSGLDGMLNHNASQ-SSSEYSEYDNSIEFPRYEEEAAAPGHTEDFELDF-----DLNLD 218
Query: 204 MEN-LQSNNDGGVT---EPIEPVGEKHQ--TNEDMKAAETAQSEKRLEKLQDNSFHGVEE 257
+N ++ D V+ I + + H+ T D+ Q L+ L D+ E+
Sbjct: 219 DDNSIEYGRDASVSINDREISIISDVHKERTTGDIFDLNFGQP---LDDLNDDEAENEED 275
Query: 258 ESLDPIKLCGKDHRS-DGEQTMVPDIAQLEKETCQATSKDINKNITMLQASTEKLCEHEV 316
L P +H+ E + P + ++ + I N ++ S E + +
Sbjct: 276 RQL-P---SNSEHQERSAESDLQPRRVRQKRTRITEDGQIITNNRKLVVDSEEAMEGLAI 331
Query: 317 PQVCSGVEMCYGSKEELPK-QVELSGEEHHSNTEQMKV 353
Q+ E ++ P + LS E E++ V
Sbjct: 332 QQLKDNQEKILSGQDSAPYISLNLSDFEKLKLIEELAV 369
Score = 88 (36.0 bits), Expect = 1.7e-11, Sum P(3) = 1.7e-11
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 6 SLLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEI 44
S++S++GPLG +W+AA K+L K Q+ T+I S + I
Sbjct: 5 SIISKQGPLGHVWLAANYDKKLTKQQLMNTSIVKSTEYI 43
Score = 50 (22.7 bits), Expect = 1.7e-11, Sum P(3) = 1.7e-11
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 743 KETARIFYEILVLQTKGIVNVKQ 765
KE + F+E+LVL T +++ Q
Sbjct: 518 KEATKCFFELLVLATNNCISLGQ 540
>SGD|S000002161 [details] [associations]
symbol:MCD1 "Essential alpha-kleisin subunit of the cohesin
complex" species:4932 "Saccharomyces cerevisiae" [GO:0005694
"chromosome" evidence=IEA] [GO:0034087 "establishment of mitotic
sister chromatid cohesion" evidence=IMP] [GO:0000775 "chromosome,
centromeric region" evidence=IEA] [GO:0007076 "mitotic chromosome
condensation" evidence=IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0006974 "response to DNA damage stimulus" evidence=IMP]
[GO:0007059 "chromosome segregation" evidence=IEA] [GO:0000228
"nuclear chromosome" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0000794
"condensed nuclear chromosome" evidence=IDA] [GO:0003682 "chromatin
binding" evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=IMP] [GO:0051301 "cell division" evidence=IEA] [GO:0007067
"mitosis" evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0034990 "nuclear mitotic cohesin complex" evidence=IDA]
InterPro:IPR006909 InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825
SGD:S000002161 GO:GO:0005739 GO:GO:0006915 GO:GO:0000775
GO:GO:0051301 EMBL:BK006938 GO:GO:0003682 GO:GO:0006302
GO:GO:0034087 GO:GO:0007076 EMBL:Z48432 GO:GO:0006473 EMBL:Z48008
eggNOG:NOG249424 KO:K06670 Gene3D:1.10.10.580 InterPro:IPR023093
OrthoDB:EOG4C2MKJ EMBL:Y14280 EMBL:U23759 EMBL:Z74051 PIR:S50979
RefSeq:NP_010281.1 PDB:1W1W PDBsum:1W1W ProteinModelPortal:Q12158
SMR:Q12158 DIP:DIP-5812N IntAct:Q12158 MINT:MINT-627334
STRING:Q12158 PaxDb:Q12158 PeptideAtlas:Q12158 EnsemblFungi:YDL003W
GeneID:851561 KEGG:sce:YDL003W CYGD:YDL003w HOGENOM:HOG000141751
EvolutionaryTrace:Q12158 NextBio:968995 PMAP-CutDB:Q12158
Genevestigator:Q12158 GermOnline:YDL003W GO:GO:0034990
Uniprot:Q12158
Length = 566
Score = 125 (49.1 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 34/105 (32%), Positives = 53/105 (50%)
Query: 7 LLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEIL-----EEEL---DVMTYRVLA 58
L + KGPL IW+A+ + + V +T+I S EI ++E + +T R
Sbjct: 14 LATNKGPLAQIWLASN-MSNIPRGSVIQTHIAESAKEIAKASGCDDESGDNEYITLRTSG 72
Query: 59 YLLLGLVRIYSKKVEYLFDDCNDAVVKINN-FLVSEKSMKNLGNL 102
LL G+VR+YSK+ +L D D + KI+ F S+K + L
Sbjct: 73 ELLQGIVRVYSKQATFLLTDIKDTLTKISMLFKTSQKMTSTVNRL 117
Score = 76 (31.8 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 738 EGRTVKETARIFYEILVLQTKGIVNVKQDDAYGDILVVKAP 778
E T +E +R F++IL L T+G + + Q +A+G+I + P
Sbjct: 517 ENITKREASRGFFDILSLATEGCIGLSQTEAFGNIKIDAKP 557
>UNIPROTKB|F5H6H7 [details] [associations]
symbol:TNFRSF10C "Tumor necrosis factor receptor
superfamily member 10C" species:9606 "Homo sapiens" [GO:0045569
"TRAIL binding" evidence=IEA] InterPro:IPR001368 InterPro:IPR020465
Pfam:PF00020 PRINTS:PR01956 PROSITE:PS50050 SMART:SM00208
EMBL:AC107959 HGNC:HGNC:11906 ChiTaRS:TNFRSF10C IPI:IPI00796652
ProteinModelPortal:F5H6H7 SMR:F5H6H7 Ensembl:ENST00000540813
ArrayExpress:F5H6H7 Bgee:F5H6H7 Uniprot:F5H6H7
Length = 157
Score = 127 (49.8 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 27/85 (31%), Positives = 38/85 (44%)
Query: 525 QNMGIAPNTRTGISLEKMAVAPGTPTGRSSEKMVVAPETPTGGSSEKMVVAPETPTCRSP 584
+ G T + E M +PGTP + E M +P TP + E M +P TP +
Sbjct: 49 EEFGANATVETPAAEETMNTSPGTPAPAAEETMNTSPGTPAPAAEETMTTSPGTPAPAAE 108
Query: 585 EKRAFAPDTPTGRSSEKMAVAPATP 609
E +P TP + E M +P TP
Sbjct: 109 ETMTTSPGTPAPAAEETMITSPGTP 133
Score = 125 (49.1 bits), Expect = 7.7e-07, P = 7.7e-07
Identities = 33/106 (31%), Positives = 47/106 (44%)
Query: 539 LEKMAVAPGTPTGRSSEKMVVAPETPTGGSSEKMVVAPETPTCRSPEKRAFAPDTPTGRS 598
+E+ T + E M +P TP + E M +P TP + E +P TP +
Sbjct: 48 VEEFGANATVETPAAEETMNTSPGTPAPAAEETMNTSPGTPAPAAEETMTTSPGTPAPAA 107
Query: 599 SEKMAVAPATPTGRSSETMAIAPDTLTVKSSELIAMTIESPIFLSV 644
E M +P TP + ETM +P T SS ++ TI I L V
Sbjct: 108 EETMTTSPGTPAPAAEETMITSPGTPA--SSHYLSCTIVGIIVLIV 151
Score = 122 (48.0 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 24/70 (34%), Positives = 35/70 (50%)
Query: 510 EKMAITSGTPIGRSSQNMGIAPNTRTGISLEKMAVAPGTPTGRSSEKMVVAPETPTGGSS 569
E M + GTP + + M +P T + E M +PGTP + E M +P TP +
Sbjct: 64 ETMNTSPGTPAPAAEETMNTSPGTPAPAAEETMTTSPGTPAPAAEETMTTSPGTPAPAAE 123
Query: 570 EKMVVAPETP 579
E M+ +P TP
Sbjct: 124 ETMITSPGTP 133
Score = 113 (44.8 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 26/80 (32%), Positives = 37/80 (46%)
Query: 515 TSGTPIGRSSQNMGIAPNTRTGISLEKMAVAPGTPTGRSSEKMVVAPETPTGGSSEKMVV 574
T TP + + M +P T + E M +PGTP + E M +P TP + E M
Sbjct: 56 TVETPA--AEETMNTSPGTPAPAAEETMNTSPGTPAPAAEETMTTSPGTPAPAAEETMTT 113
Query: 575 APETPTCRSPEKRAFAPDTP 594
+P TP + E +P TP
Sbjct: 114 SPGTPAPAAEETMITSPGTP 133
>WB|WBGene00007282 [details] [associations]
symbol:clec-223 species:6239 "Caenorhabditis elegans"
[GO:0030246 "carbohydrate binding" evidence=IEA] InterPro:IPR001304
SMART:SM00034 GO:GO:0030246 Gene3D:3.10.100.10 InterPro:IPR016186
InterPro:IPR016187 SUPFAM:SSF56436 eggNOG:NOG12793
GeneTree:ENSGT00700000104174 EMBL:Z81458 RefSeq:NP_505863.2
ProteinModelPortal:O17562 PaxDb:O17562 EnsemblMetazoa:C03E10.5
GeneID:179561 KEGG:cel:CELE_C03E10.5 UCSC:C03E10.5 CTD:179561
WormBase:C03E10.5 InParanoid:O17562 OMA:PEYDEIM NextBio:905942
Uniprot:O17562
Length = 1034
Score = 154 (59.3 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 48/172 (27%), Positives = 78/172 (45%)
Query: 515 TSGTPIGRSSQNMGIAPNTRTGISLEKMAVAPGTPTGRSSEKMVVAP----ETPTGGSSE 570
TS T + ++++ AP+T T + AP T T + + AP ETPT S+
Sbjct: 95 TSTTTVSPTTESTA-APSTSTETPTTESTAAPSTSTETPTTESTAAPSTSTETPTTESTA 153
Query: 571 KMVVAPETPTCRSPEKRAFAPDTPTGRSSEKMAVAPATPTGRSSETMAIAPDTLTVKSSE 630
+ ETPT S + + +TPT S+ + + TPT S+ + + +T T +S+
Sbjct: 154 APSTSTETPTTESTAAPSTSTETPTTESTAAPSTSTETPTTESTAAPSTSTETPTTESTA 213
Query: 631 LIAMTIESPIFLSV--PSRSFETPENAHSIAVETLADSYATPKKDLASSKDE 680
+ + E+P S PS S ETP + A T ++ T S+ E
Sbjct: 214 APSTSTETPTTESTAAPSTSTETPTTESTAAPSTSTETPTTESTAAPSTSTE 265
Score = 152 (58.6 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 52/186 (27%), Positives = 79/186 (42%)
Query: 501 ELPTVHKSLEKMAITSGTPIGRSSQNMGIAPNTRTGISLEKMAVAPGTPTGRSSEKMVVA 560
E PT + T TP S+ AP+T T + AP T T + + A
Sbjct: 175 ETPTTESTAAPSTSTE-TPTTESTA----APSTSTETPTTESTAAPSTSTETPTTESTAA 229
Query: 561 P----ETPTGGSSEKMVVAPETPTCRSPEKRAFAPDTPTGRSSEKMAVAPATPTGRSSET 616
P ETPT S+ + ETPT S + + +TPT S+ + + TPT S+
Sbjct: 230 PSTSTETPTTESTAAPSTSTETPTTESTAAPSTSTETPTTESTAAPSTSTETPTTESTAA 289
Query: 617 MAIAPDTLTVKSSELIAMTIESPIFLSV--PSRSFETPENAHSIAVETLADSYATPKKDL 674
+ + +T T +S+ + + E+P S PS S ETP + A T ++ T
Sbjct: 290 PSTSTETPTTESTAAPSTSTETPTTESTAAPSTSTETPTTESTAAPSTSTETPTTESTAA 349
Query: 675 ASSKDE 680
S+ E
Sbjct: 350 PSTSTE 355
Score = 152 (58.6 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 52/186 (27%), Positives = 79/186 (42%)
Query: 501 ELPTVHKSLEKMAITSGTPIGRSSQNMGIAPNTRTGISLEKMAVAPGTPTGRSSEKMVVA 560
E PT + T TP S+ AP+T T + AP T T + + A
Sbjct: 145 ETPTTESTAAPSTSTE-TPTTESTA----APSTSTETPTTESTAAPSTSTETPTTESTAA 199
Query: 561 P----ETPTGGSSEKMVVAPETPTCRSPEKRAFAPDTPTGRSSEKMAVAPATPTGRSSET 616
P ETPT S+ + ETPT S + + +TPT S+ + + TPT S+
Sbjct: 200 PSTSTETPTTESTAAPSTSTETPTTESTAAPSTSTETPTTESTAAPSTSTETPTTESTAA 259
Query: 617 MAIAPDTLTVKSSELIAMTIESPIFLSV--PSRSFETPENAHSIAVETLADSYATPKKDL 674
+ + +T T +S+ + + E+P S PS S ETP + A T ++ T
Sbjct: 260 PSTSTETPTTESTAAPSTSTETPTTESTAAPSTSTETPTTESTAAPSTSTETPTTESTAA 319
Query: 675 ASSKDE 680
S+ E
Sbjct: 320 PSTSTE 325
Score = 152 (58.6 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 52/186 (27%), Positives = 79/186 (42%)
Query: 501 ELPTVHKSLEKMAITSGTPIGRSSQNMGIAPNTRTGISLEKMAVAPGTPTGRSSEKMVVA 560
E PT + T TP S+ AP+T T + AP T T + + A
Sbjct: 115 ETPTTESTAAPSTSTE-TPTTESTA----APSTSTETPTTESTAAPSTSTETPTTESTAA 169
Query: 561 P----ETPTGGSSEKMVVAPETPTCRSPEKRAFAPDTPTGRSSEKMAVAPATPTGRSSET 616
P ETPT S+ + ETPT S + + +TPT S+ + + TPT S+
Sbjct: 170 PSTSTETPTTESTAAPSTSTETPTTESTAAPSTSTETPTTESTAAPSTSTETPTTESTAA 229
Query: 617 MAIAPDTLTVKSSELIAMTIESPIFLSV--PSRSFETPENAHSIAVETLADSYATPKKDL 674
+ + +T T +S+ + + E+P S PS S ETP + A T ++ T
Sbjct: 230 PSTSTETPTTESTAAPSTSTETPTTESTAAPSTSTETPTTESTAAPSTSTETPTTESTAA 289
Query: 675 ASSKDE 680
S+ E
Sbjct: 290 PSTSTE 295
Score = 151 (58.2 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 52/183 (28%), Positives = 80/183 (43%)
Query: 501 ELPTVHKSLEKMAITSGTPIGRSSQNMGIAPNTRTGISLEKMAVAPGTPTGRSSEKMVVA 560
E PT + T TP S+ AP+T T + AP T T + + A
Sbjct: 190 ETPTTESTAAPSTSTE-TPTTESTA----APSTSTETPTTESTAAPSTSTETPTTESTAA 244
Query: 561 P----ETPTGGSSEKMVVAPETPTCRSPEKRAFAPDTPTGRSSEKMAVAPATPTGRSSET 616
P ETPT S+ + ETPT S + + +TPT S+ + + TPT S+
Sbjct: 245 PSTSTETPTTESTAAPSTSTETPTTESTAAPSTSTETPTTESTAAPSTSTETPTTESTAA 304
Query: 617 MAIAPDTLTVKSSELIAMTIESPIFLSV--PSRSFETPENAHSIAVETLADSYATPKKDL 674
+ + +T T +S+ + + E+P S PS S ETP + A T ++ T K +
Sbjct: 305 PSTSTETPTTESTAAPSTSTETPTTESTAAPSTSTETPTTESTAAPSTSTET-PTTKTTI 363
Query: 675 ASS 677
S+
Sbjct: 364 GST 366
Score = 148 (57.2 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 45/166 (27%), Positives = 74/166 (44%)
Query: 517 GTPIGRSSQNMGIAPNTRTGISLEKMAVAPGTPTGRSSEKMVVAPETPTGGSSEKMVVAP 576
G P +S+ ++P T S + + TPT S+ + ETPT S+ +
Sbjct: 88 GPPAEKSTSTTTVSPTTE---STAAPSTSTETPTTESTAAPSTSTETPTTESTAAPSTST 144
Query: 577 ETPTCRSPEKRAFAPDTPTGRSSEKMAVAPATPTGRSSETMAIAPDTLTVKSSELIAMTI 636
ETPT S + + +TPT S+ + + TPT S+ + + +T T +S+ + +
Sbjct: 145 ETPTTESTAAPSTSTETPTTESTAAPSTSTETPTTESTAAPSTSTETPTTESTAAPSTST 204
Query: 637 ESPIFLSV--PSRSFETPENAHSIAVETLADSYATPKKDLASSKDE 680
E+P S PS S ETP + A T ++ T S+ E
Sbjct: 205 ETPTTESTAAPSTSTETPTTESTAAPSTSTETPTTESTAAPSTSTE 250
Score = 147 (56.8 bits), Expect = 6.5e-05, Sum P(2) = 6.5e-05
Identities = 50/173 (28%), Positives = 77/173 (44%)
Query: 501 ELPTVHKSLEKMAITSGTPIGRSSQNMGIAPNTRTGISLEKMAVAPGTPTGRSSEKMVVA 560
E PT + T TP S+ AP+T T + AP T T + + A
Sbjct: 205 ETPTTESTAAPSTSTE-TPTTESTA----APSTSTETPTTESTAAPSTSTETPTTESTAA 259
Query: 561 P----ETPTGGSSEKMVVAPETPTCRSPEKRAFAPDTPTGRSSEKMAVAPATPTGRSSET 616
P ETPT S+ + ETPT S + + +TPT S+ + + TPT S+
Sbjct: 260 PSTSTETPTTESTAAPSTSTETPTTESTAAPSTSTETPTTESTAAPSTSTETPTTESTAA 319
Query: 617 MAIAPDTLTVKSSELIAMTIESPIFLSV--PSRSFETPENAHSI-AVETLADS 666
+ + +T T +S+ + + E+P S PS S ETP +I + T++ S
Sbjct: 320 PSTSTETPTTESTAAPSTSTETPTTESTAAPSTSTETPTTKTTIGSTSTISQS 372
Score = 37 (18.1 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 6/9 (66%), Positives = 7/9 (77%)
Query: 174 DYSPADDIF 182
DYSP DD +
Sbjct: 51 DYSPEDDYY 59
>UNIPROTKB|E5RI01 [details] [associations]
symbol:RAD21 "Double-strand-break repair protein rad21
homolog" species:9606 "Homo sapiens" [GO:0034991 "nuclear meiotic
cohesin complex" evidence=IEA] InterPro:IPR006909 Pfam:PF04824
GO:GO:0000228 Gene3D:1.10.10.580 InterPro:IPR023093 HGNC:HGNC:9811
ChiTaRS:RAD21 EMBL:AC087350 IPI:IPI00982167
ProteinModelPortal:E5RI01 SMR:E5RI01 Ensembl:ENST00000523986
ArrayExpress:E5RI01 Bgee:E5RI01 Uniprot:E5RI01
Length = 135
Score = 112 (44.5 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 33/127 (25%), Positives = 61/127 (48%)
Query: 652 PENAHSIAVETLADSYATPKKDLASSKDEDFDLIFMNEESNFGEVDRQESYGFSARTRMV 711
PE +I + + + P+K+ K+++ D +E+++ G+ D QE ++ RT+ +
Sbjct: 10 PEEPPNIC-QLIPELELLPEKEKEKEKEKEDDEEEEDEDASGGDQD-QEERRWNKRTQQM 67
Query: 712 AKYLHRRFLCHKERREDEAIKLLPLLEGRTVKETARIFYEILVLQTKGIVNVKQDDAYGD 771
L R + E+I LL L K+ A FY LVL+ + + + Q++ Y D
Sbjct: 68 LHGLQRALA----KTGAESISLLELCRNTNRKQAAAKFYSFLVLKKQQAIELTQEEPYSD 123
Query: 772 ILVVKAP 778
I+ P
Sbjct: 124 IIATPGP 130
>UNIPROTKB|E1BL69 [details] [associations]
symbol:REC8 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0034991 "nuclear meiotic cohesin complex" evidence=IEA]
[GO:0007286 "spermatid development" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0007129 "synapsis" evidence=IEA]
[GO:0001673 "male germ cell nucleus" evidence=IEA] [GO:0001556
"oocyte maturation" evidence=IEA] [GO:0000800 "lateral element"
evidence=IEA] [GO:0000778 "condensed nuclear chromosome
kinetochore" evidence=IEA] InterPro:IPR006909 InterPro:IPR006910
Pfam:PF04824 Pfam:PF04825 GO:GO:0000780 GO:GO:0007286 GO:GO:0001673
GO:GO:0001556 GO:GO:0000800 GO:GO:0007141 GO:GO:0007129
GO:GO:0030893 Gene3D:1.10.10.580 InterPro:IPR023093 CTD:9985
KO:K13054 GeneTree:ENSGT00390000011379 OMA:ARVFYLL
EMBL:DAAA02028032 IPI:IPI00712766 RefSeq:NP_001178217.1
UniGene:Bt.100955 Ensembl:ENSBTAT00000003504 GeneID:516291
KEGG:bta:516291 NextBio:20872182 Uniprot:E1BL69
Length = 587
Score = 98 (39.6 bits), Expect = 2.8e-05, Sum P(3) = 2.8e-05
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 726 REDEAIKLLPLLEGRTVKETARIFYEILVLQTKGIVNVKQDDAYGDILVVKAPWWDQS 783
RE + L+P L R + AR+FY +LVL T+ I+ VKQ++ YG +L+ P + S
Sbjct: 532 REPDFSSLVPPLSPRRM--AARVFYLLLVLATQQILRVKQEEPYGRLLIQPGPRFHDS 587
Score = 85 (35.0 bits), Expect = 2.8e-05, Sum P(3) = 2.8e-05
Identities = 27/100 (27%), Positives = 48/100 (48%)
Query: 1 MFYSRSLLSRK-GPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEEL---------- 49
MFY ++L R G IW+AA RL K + N+ + +EIL L
Sbjct: 1 MFYYPNVLQRHTGCFATIWLAATRGCRLVKREYLNVNVVKTCEEILNYVLVRVQPPLPGA 60
Query: 50 --DVMTYRVLAYLLLGLVRIYSKKVEYLFDDCNDAVVKIN 87
+ + A L +G++R+YS++ +YL +D + +++
Sbjct: 61 PRPRFSLYLSAQLQIGVIRVYSQQCQYLVEDIQHILERLH 100
Score = 43 (20.2 bits), Expect = 2.8e-05, Sum P(3) = 2.8e-05
Identities = 25/107 (23%), Positives = 42/107 (39%)
Query: 484 ERLKIPETAKSVELLEPELPTV--HKSLEKMAITSGTPIGRSSQNMGIAPNTRTGISLEK 541
ERL + ++++E ELP++ L +M P M +AP + +
Sbjct: 97 ERLHRAQLQIRIDMVETELPSLLLPDHLARMETLEDAPDPFFGM-MSVAPMLPDPFDIPQ 155
Query: 542 MA--VAPGTPTGRSSEKMVVAPETPTGGSS-EKMVVAPETPTCRSPE 585
+ + TP E + PE P E++ V PE T + E
Sbjct: 156 VRHLLEAVTPEKVPEE---IPPEVPVEPRKPERIRVTPEAITIQEAE 199
Score = 39 (18.8 bits), Expect = 6.9e-05, Sum P(3) = 6.9e-05
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 478 RAFLCQERLK----IPETAKSVELLEPELP 503
R L E LK +PE +EL P +P
Sbjct: 281 REVLAPEELKPEVPLPEVTPPLELRPPPIP 310
>UNIPROTKB|O14798 [details] [associations]
symbol:TNFRSF10C "Tumor necrosis factor receptor
superfamily member 10C" species:9606 "Homo sapiens" [GO:0045569
"TRAIL binding" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0031225 "anchored to membrane" evidence=IEA]
[GO:0004888 "transmembrane signaling receptor activity"
evidence=TAS] [GO:0005887 "integral to plasma membrane"
evidence=TAS] [GO:0007165 "signal transduction" evidence=TAS]
InterPro:IPR001368 InterPro:IPR020465 Pfam:PF00020 PRINTS:PR01956
PROSITE:PS00652 PROSITE:PS50050 SMART:SM00208 GO:GO:0006915
GO:GO:0005887 GO:GO:0031225 GO:GO:0004888
Pathway_Interaction_DB:trail_pathway KO:K04722 EMBL:AC107959
EMBL:AF020502 EMBL:AF014794 EMBL:AF012629 EMBL:AF012536
EMBL:AF016267 EMBL:AF033854 EMBL:AY358281 EMBL:CR541857
EMBL:BC125041 EMBL:BC125042 IPI:IPI00021970 RefSeq:NP_003832.2
UniGene:Hs.655801 ProteinModelPortal:O14798 SMR:O14798
DIP:DIP-6242N IntAct:O14798 MINT:MINT-1394827 STRING:O14798
PaxDb:O14798 PRIDE:O14798 Ensembl:ENST00000356864 GeneID:8794
KEGG:hsa:8794 CTD:8794 GeneCards:GC08P022997 HGNC:HGNC:11906
HPA:CAB025635 MIM:603613 neXtProt:NX_O14798 PharmGKB:PA36599
eggNOG:NOG253751 HOVERGEN:HBG061470 InParanoid:O14798
OrthoDB:EOG43TZWC PhylomeDB:O14798 ChiTaRS:TNFRSF10C
GenomeRNAi:8794 NextBio:32980 ArrayExpress:O14798 Bgee:O14798
CleanEx:HS_TNFRSF10C Genevestigator:O14798
GermOnline:ENSG00000173535 Uniprot:O14798
Length = 259
Score = 127 (49.8 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 27/85 (31%), Positives = 38/85 (44%)
Query: 525 QNMGIAPNTRTGISLEKMAVAPGTPTGRSSEKMVVAPETPTGGSSEKMVVAPETPTCRSP 584
+ G T + E M +PGTP + E M +P TP + E M +P TP +
Sbjct: 151 EEFGANATVETPAAEETMNTSPGTPAPAAEETMNTSPGTPAPAAEETMTTSPGTPAPAAE 210
Query: 585 EKRAFAPDTPTGRSSEKMAVAPATP 609
E +P TP + E M +P TP
Sbjct: 211 ETMTTSPGTPAPAAEETMITSPGTP 235
Score = 125 (49.1 bits), Expect = 6.8e-05, P = 6.8e-05
Identities = 33/106 (31%), Positives = 47/106 (44%)
Query: 539 LEKMAVAPGTPTGRSSEKMVVAPETPTGGSSEKMVVAPETPTCRSPEKRAFAPDTPTGRS 598
+E+ T + E M +P TP + E M +P TP + E +P TP +
Sbjct: 150 VEEFGANATVETPAAEETMNTSPGTPAPAAEETMNTSPGTPAPAAEETMTTSPGTPAPAA 209
Query: 599 SEKMAVAPATPTGRSSETMAIAPDTLTVKSSELIAMTIESPIFLSV 644
E M +P TP + ETM +P T SS ++ TI I L V
Sbjct: 210 EETMTTSPGTPAPAAEETMITSPGTPA--SSHYLSCTIVGIIVLIV 253
Score = 122 (48.0 bits), Expect = 0.00015, P = 0.00015
Identities = 24/70 (34%), Positives = 35/70 (50%)
Query: 510 EKMAITSGTPIGRSSQNMGIAPNTRTGISLEKMAVAPGTPTGRSSEKMVVAPETPTGGSS 569
E M + GTP + + M +P T + E M +PGTP + E M +P TP +
Sbjct: 166 ETMNTSPGTPAPAAEETMNTSPGTPAPAAEETMTTSPGTPAPAAEETMTTSPGTPAPAAE 225
Query: 570 EKMVVAPETP 579
E M+ +P TP
Sbjct: 226 ETMITSPGTP 235
>UNIPROTKB|F1SGN3 [details] [associations]
symbol:REC8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0034991 "nuclear meiotic cohesin complex" evidence=IEA]
[GO:0007286 "spermatid development" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0007129 "synapsis" evidence=IEA]
[GO:0001673 "male germ cell nucleus" evidence=IEA] [GO:0001556
"oocyte maturation" evidence=IEA] [GO:0000800 "lateral element"
evidence=IEA] [GO:0000778 "condensed nuclear chromosome
kinetochore" evidence=IEA] InterPro:IPR006909 InterPro:IPR006910
Pfam:PF04824 Pfam:PF04825 GO:GO:0000780 GO:GO:0007286 GO:GO:0001673
GO:GO:0001556 GO:GO:0000800 GO:GO:0007141 GO:GO:0007129
EMBL:CT961055 GO:GO:0030893 Gene3D:1.10.10.580 InterPro:IPR023093
GeneTree:ENSGT00390000011379 OMA:ARVFYLL Ensembl:ENSSSCT00000002239
Uniprot:F1SGN3
Length = 583
Score = 91 (37.1 bits), Expect = 7.4e-05, Sum P(3) = 7.4e-05
Identities = 28/100 (28%), Positives = 48/100 (48%)
Query: 1 MFYSRSLLSRK-GPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEEL---------- 49
MFY S+L R G IW+AA RL K + + N+ + +EIL L
Sbjct: 1 MFYYPSVLQRHTGCFATIWLAATRGTRLVKREYLKVNVEKTCEEILNYVLVRVQPPLPGL 60
Query: 50 --DVMTYRVLAYLLLGLVRIYSKKVEYLFDDCNDAVVKIN 87
+ + A L +G++R+Y ++ +YL DD + +++
Sbjct: 61 PRPRFSLYLSAQLQIGIIRVYFQQCQYLVDDIQHILERLH 100
Score = 87 (35.7 bits), Expect = 7.4e-05, Sum P(3) = 7.4e-05
Identities = 23/65 (35%), Positives = 35/65 (53%)
Query: 715 LHRRFLCHKE-RREDEAIKLLPLLEGRTVKETARIFYEILVLQTKGIVNVKQDDAYGDIL 773
+HR + RE + L+P L R + AR+FY +LVL + I+ VKQ+ YG +L
Sbjct: 516 VHRAVALELQANREPDFSSLVPPLSPRRM--AARVFYLLLVLAAQQILCVKQEKPYGRLL 573
Query: 774 VVKAP 778
+ P
Sbjct: 574 IQPGP 578
Score = 44 (20.5 bits), Expect = 7.4e-05, Sum P(3) = 7.4e-05
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 489 PETAKSVELLEPELPTVHKSLEKMAITSGTP 519
PE K +E + PE+PT + E++ +T +P
Sbjct: 165 PE--KVLEEILPEVPTELREPERIPVTVRSP 193
Score = 44 (20.5 bits), Expect = 7.4e-05, Sum P(3) = 7.4e-05
Identities = 21/102 (20%), Positives = 39/102 (38%)
Query: 590 APDTPTGRSSEKMAVAPATPTGRSSETM-AIAPDTLTVKSSELIAMTIESPIFLSVPSRS 648
APD G SE+ + + + A+ P+ + + + + P + V RS
Sbjct: 133 APDPFFGMMSEEPRLPSPFDIPQLRHLLEAVTPEKVLEEILPEVPTELREPERIPVTVRS 192
Query: 649 FETPENAHSIAVETLADSYATPKKDLASSKDEDFDLIFMNEE 690
PE + VE + +++L D DL+ E+
Sbjct: 193 ---PEAITLLEVEPIRMLQVEGERELPEVSRRDLDLLIAEED 231
>UNIPROTKB|H0YLK4 [details] [associations]
symbol:REC8 "Meiotic recombination protein REC8 homolog"
species:9606 "Homo sapiens" [GO:0000778 "condensed nuclear
chromosome kinetochore" evidence=IEA] [GO:0000800 "lateral element"
evidence=IEA] [GO:0001556 "oocyte maturation" evidence=IEA]
[GO:0001673 "male germ cell nucleus" evidence=IEA] [GO:0007129
"synapsis" evidence=IEA] [GO:0007141 "male meiosis I" evidence=IEA]
[GO:0007286 "spermatid development" evidence=IEA] [GO:0034991
"nuclear meiotic cohesin complex" evidence=IEA] InterPro:IPR006909
InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825 GO:GO:0000780
GO:GO:0007286 GO:GO:0001673 GO:GO:0001556 GO:GO:0000800
GO:GO:0007141 EMBL:AL136295 GO:GO:0007129 GO:GO:0030893
Gene3D:1.10.10.580 InterPro:IPR023093 HGNC:HGNC:16879 OMA:ARVFYLL
ProteinModelPortal:H0YLK4 SMR:H0YLK4 Ensembl:ENST00000559919
PhylomeDB:H0YLK4 Bgee:H0YLK4 Uniprot:H0YLK4
Length = 546
Score = 88 (36.0 bits), Expect = 0.00024, Sum P(3) = 0.00024
Identities = 27/100 (27%), Positives = 48/100 (48%)
Query: 1 MFYSRSLLSRK-GPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEEL---------- 49
MFY ++L R G IW+AA RL K + N+ + +EIL L
Sbjct: 1 MFYYPNVLQRHTGCFATIWLAATRGSRLVKREYLRVNVVKTCEEILNYVLVRVQPPQPGL 60
Query: 50 --DVMTYRVLAYLLLGLVRIYSKKVEYLFDDCNDAVVKIN 87
+ + A L +G++R+YS++ +YL +D + +++
Sbjct: 61 PRPRFSLYLSAQLQIGVIRVYSQQCQYLVEDIQHILERLH 100
Score = 84 (34.6 bits), Expect = 0.00024, Sum P(3) = 0.00024
Identities = 22/65 (33%), Positives = 35/65 (53%)
Query: 715 LHRRFLCHKE-RREDEAIKLLPLLEGRTVKETARIFYEILVLQTKGIVNVKQDDAYGDIL 773
+HR + RE + L+ L R + AR+FY +LVL + I++VKQ+ YG +L
Sbjct: 481 VHRAVALELQANREPDFSSLVSPLSPRRM--AARVFYLLLVLSAQQILHVKQEKPYGRLL 538
Query: 774 VVKAP 778
+ P
Sbjct: 539 IQPGP 543
Score = 44 (20.5 bits), Expect = 0.00024, Sum P(3) = 0.00024
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 488 IPETAKSVELLEPELPTVHKSLEKMAIT 515
IPE VE + PE+PT + E++ +T
Sbjct: 163 IPER---VEEIPPEVPTEPREPERIPVT 187
Score = 41 (19.5 bits), Expect = 0.00047, Sum P(3) = 0.00047
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 310 KLCEHEVPQVCSGVEMCYGSKEELPKQVELSGEEHHSNTEQMKVMEIS 357
K E+P+ + E K E+P ++E+ E + M +EIS
Sbjct: 374 KALRRELPEEAAAEEE--RRKIEVPSEIEVPREALEPSVPLMVSLEIS 419
Score = 40 (19.1 bits), Expect = 0.00059, Sum P(3) = 0.00059
Identities = 34/131 (25%), Positives = 50/131 (38%)
Query: 483 QERLKIPETA---KSVELLEPELPTVHKSLEKMAITSGTPIGRSSQNMGIAPNTRTGISL 539
+E +IP T +++ +LE E P + LE + R ++ IA I L
Sbjct: 179 REPERIPVTVLPPEAITILEAE-PI--RMLEIEGERELPEVSRRELDLLIAEEE--AILL 233
Query: 540 EKMAVAPGTPTGRSSEKMVVAPETP--TG---GSSEKMVVAPET---PTCRSPEKRAFAP 591
E + P P + PE TG G+ V PE P SPE+R P
Sbjct: 234 EIPRLPPPAPAEVEGIGEALGPEELRLTGWEPGALLMEVTPPEELRLPAPPSPERRPPVP 293
Query: 592 DTPTGRSSEKM 602
P R ++
Sbjct: 294 PPPRRRRRRRL 304
>UNIPROTKB|O95072 [details] [associations]
symbol:REC8 "Meiotic recombination protein REC8 homolog"
species:9606 "Homo sapiens" [GO:0000778 "condensed nuclear
chromosome kinetochore" evidence=IEA] [GO:0000800 "lateral element"
evidence=IEA] [GO:0001556 "oocyte maturation" evidence=IEA]
[GO:0001673 "male germ cell nucleus" evidence=IEA] [GO:0007129
"synapsis" evidence=IEA] [GO:0007141 "male meiosis I" evidence=IEA]
[GO:0007286 "spermatid development" evidence=IEA] [GO:0034991
"nuclear meiotic cohesin complex" evidence=IEA] [GO:0005634
"nucleus" evidence=TAS] [GO:0007126 "meiosis" evidence=TAS]
[GO:0007131 "reciprocal meiotic recombination" evidence=TAS]
[GO:0007283 "spermatogenesis" evidence=TAS] [GO:0007062 "sister
chromatid cohesion" evidence=TAS] InterPro:IPR006909
InterPro:IPR006910 Pfam:PF04824 Pfam:PF04825 GO:GO:0005634
Reactome:REACT_115566 GO:GO:0000780 GO:GO:0007286 GO:GO:0007283
Reactome:REACT_111183 EMBL:CH471078 GO:GO:0001673 GO:GO:0001556
GO:GO:0007131 GO:GO:0000800 GO:GO:0007141 EMBL:AL136295
GO:GO:0007129 GO:GO:0007062 GO:GO:0030893 Gene3D:1.10.10.580
InterPro:IPR023093 EMBL:AF006264 EMBL:AK001435 EMBL:AK291191
EMBL:CR457263 EMBL:AL832973 EMBL:BC004159 EMBL:BC010887
EMBL:BC019326 IPI:IPI00293487 IPI:IPI00937443 RefSeq:NP_001041670.1
RefSeq:NP_005123.2 UniGene:Hs.419259 ProteinModelPortal:O95072
SMR:O95072 STRING:O95072 PhosphoSite:O95072 PRIDE:O95072
Ensembl:ENST00000311457 GeneID:9985 KEGG:hsa:9985 UCSC:uc001wmr.3
CTD:9985 GeneCards:GC14P024641 HGNC:HGNC:16879 HPA:HPA031727
HPA:HPA031729 MIM:608193 neXtProt:NX_O95072 PharmGKB:PA162401009
eggNOG:NOG248028 HOVERGEN:HBG056766 InParanoid:O95072 KO:K13054
OrthoDB:EOG4B5P55 GenomeRNAi:9985 NextBio:37700 Bgee:O95072
CleanEx:HS_REC8 Genevestigator:O95072 GermOnline:ENSG00000100918
Uniprot:O95072
Length = 547
Score = 88 (36.0 bits), Expect = 0.00024, Sum P(3) = 0.00024
Identities = 27/100 (27%), Positives = 48/100 (48%)
Query: 1 MFYSRSLLSRK-GPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEEL---------- 49
MFY ++L R G IW+AA RL K + N+ + +EIL L
Sbjct: 1 MFYYPNVLQRHTGCFATIWLAATRGSRLVKREYLRVNVVKTCEEILNYVLVRVQPPQPGL 60
Query: 50 --DVMTYRVLAYLLLGLVRIYSKKVEYLFDDCNDAVVKIN 87
+ + A L +G++R+YS++ +YL +D + +++
Sbjct: 61 PRPRFSLYLSAQLQIGVIRVYSQQCQYLVEDIQHILERLH 100
Score = 84 (34.6 bits), Expect = 0.00024, Sum P(3) = 0.00024
Identities = 22/65 (33%), Positives = 35/65 (53%)
Query: 715 LHRRFLCHKE-RREDEAIKLLPLLEGRTVKETARIFYEILVLQTKGIVNVKQDDAYGDIL 773
+HR + RE + L+ L R + AR+FY +LVL + I++VKQ+ YG +L
Sbjct: 482 VHRAVALELQANREPDFSSLVSPLSPRRM--AARVFYLLLVLSAQQILHVKQEKPYGRLL 539
Query: 774 VVKAP 778
+ P
Sbjct: 540 IQPGP 544
Score = 44 (20.5 bits), Expect = 0.00024, Sum P(3) = 0.00024
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 488 IPETAKSVELLEPELPTVHKSLEKMAIT 515
IPE VE + PE+PT + E++ +T
Sbjct: 163 IPER---VEEIPPEVPTEPREPERIPVT 187
Score = 42 (19.8 bits), Expect = 0.00038, Sum P(3) = 0.00038
Identities = 34/131 (25%), Positives = 50/131 (38%)
Query: 483 QERLKIPETA---KSVELLEPELPTVHKSLEKMAITSGTPIGRSSQNMGIAPNTRTGISL 539
+E +IP T +++ +LE E P + LE + R ++ IA I L
Sbjct: 179 REPERIPVTVLPPEAITILEAE-PI--RMLEIEGERELPEVSRRELDLLIAEEEEA-ILL 234
Query: 540 EKMAVAPGTPTGRSSEKMVVAPETP--TG---GSSEKMVVAPET---PTCRSPEKRAFAP 591
E + P P + PE TG G+ V PE P SPE+R P
Sbjct: 235 EIPRLPPPAPAEVEGIGEALGPEELRLTGWEPGALLMEVTPPEELRLPAPPSPERRPPVP 294
Query: 592 DTPTGRSSEKM 602
P R ++
Sbjct: 295 PPPRRRRRRRL 305
Score = 41 (19.5 bits), Expect = 0.00047, Sum P(3) = 0.00047
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 310 KLCEHEVPQVCSGVEMCYGSKEELPKQVELSGEEHHSNTEQMKVMEIS 357
K E+P+ + E K E+P ++E+ E + M +EIS
Sbjct: 375 KALRRELPEEAAAEEE--RRKIEVPSEIEVPREALEPSVPLMVSLEIS 420
>UNIPROTKB|E5RFZ5 [details] [associations]
symbol:RAD21 "Double-strand-break repair protein rad21
homolog" species:9606 "Homo sapiens" [GO:0034991 "nuclear meiotic
cohesin complex" evidence=IEA] InterPro:IPR006909 Pfam:PF04824
GO:GO:0000228 Gene3D:1.10.10.580 InterPro:IPR023093 HGNC:HGNC:9811
ChiTaRS:RAD21 EMBL:AC087350 IPI:IPI00980849
ProteinModelPortal:E5RFZ5 SMR:E5RFZ5 Ensembl:ENST00000518055
ArrayExpress:E5RFZ5 Bgee:E5RFZ5 Uniprot:E5RFZ5
Length = 176
Score = 114 (45.2 bits), Expect = 0.00024, P = 0.00024
Identities = 44/179 (24%), Positives = 82/179 (45%)
Query: 600 EKMAVAPATPTGRSSETMAIAPDTLTVKSSELIAMTIESPIFLSVPSRSFETPENAHSIA 659
++ A+ P P G + I P+ + + ++ M I P+ L P PE +I
Sbjct: 9 DESAMPPPPPQGVKRKAGQIDPEPV-MPPQQVEQMEIP-PVEL--P------PEEPPNIC 58
Query: 660 VETLADSYATPKKDLASSKDEDFDLIFMNEESNFGEVDRQESYGFSARTRMVAKYLHRRF 719
+ + + P+K+ K+++ D +E+++ G+ D QE ++ RT+ + L R
Sbjct: 59 -QLIPELELLPEKEKEKEKEKEDDEEEEDEDASGGDQD-QEERRWNKRTQQMLHGLQRAL 116
Query: 720 LCHKERREDEAIKLLPLLEGRTVKETARIFYEILVLQTKGIVNVKQDDAYGDILVVKAP 778
+ E+I LL L K+ A FY LVL+ + + + Q++ Y DI+ P
Sbjct: 117 A----KTGAESISLLELCRNTNRKQAAAKFYSFLVLKKQQAIELTQEEPYSDIIATPGP 171
>WB|WBGene00021580 [details] [associations]
symbol:clec-174 species:6239 "Caenorhabditis elegans"
[GO:0030246 "carbohydrate binding" evidence=IEA] InterPro:IPR001304
PROSITE:PS50041 SMART:SM00034 GO:GO:0030246 Gene3D:3.10.100.10
InterPro:IPR016186 InterPro:IPR016187 SUPFAM:SSF56436
GeneTree:ENSGT00700000104174 EMBL:FO081491 RefSeq:NP_500441.2
UniGene:Cel.29165 ProteinModelPortal:Q9N3W8 SMR:Q9N3W8
EnsemblMetazoa:Y46C8AL.2 GeneID:189943 KEGG:cel:CELE_Y46C8AL.2
UCSC:Y46C8AL.2 CTD:189943 WormBase:Y46C8AL.2 eggNOG:NOG310387
InParanoid:Q9N3W8 OMA:TTMKSTP NextBio:944138 Uniprot:Q9N3W8
Length = 456
Score = 121 (47.7 bits), Expect = 0.00060, P = 0.00060
Identities = 53/169 (31%), Positives = 71/169 (42%)
Query: 489 PETAKSVELLEPELPTVHKSLEKMAIT-SGTPIGRSSQN-MGIAPNTRTGISLEKMAVAP 546
P T KS P PT KS T TP ++ M P T T + M P
Sbjct: 266 PTTMKSTPTT-PTTPTTMKSTPTTPTTMKSTPTTPTTPTTMKSTPTTPT--TPTTMKSTP 322
Query: 547 GTPTGRSSEKMVVAPETPTGGSSEKMVVAPETPTCRSPEKRAFAPDTPTGRSSEKMA-VA 605
TPT ++ K P TPT ++ K P TPT +P P TPT ++ K
Sbjct: 323 TTPTTPTTMKST--PTTPTTPTTMKST--PTTPT--TPTTMKSTPTTPTTPTTMKSTPTT 376
Query: 606 PATPTG-RSSETMAIAPDTLTVKSSELIAMTIES-PIFLSVPSRSFETP 652
P TPT +S+ T P T+ KS+ T++S P + P+ TP
Sbjct: 377 PTTPTTMKSTPTTPTTPTTM--KSTPTTPTTMKSTPTTPTTPTTMKSTP 423
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.129 0.369 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 787 781 0.00094 121 3 11 23 0.44 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 48
No. of states in DFA: 618 (66 KB)
Total size of DFA: 379 KB (2186 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 84.68u 0.10s 84.78t Elapsed: 00:00:05
Total cpu time: 84.69u 0.10s 84.79t Elapsed: 00:00:05
Start: Fri May 10 05:32:40 2013 End: Fri May 10 05:32:45 2013