BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 003912
         (787 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1W1W|E Chain E, Sc Smc1hd:scc1-c Complex, Atpgs
 pdb|1W1W|F Chain F, Sc Smc1hd:scc1-c Complex, Atpgs
 pdb|1W1W|G Chain G, Sc Smc1hd:scc1-c Complex, Atpgs
 pdb|1W1W|H Chain H, Sc Smc1hd:scc1-c Complex, Atpgs
          Length = 121

 Score = 33.9 bits (76), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 26/41 (63%)

Query: 738 EGRTVKETARIFYEILVLQTKGIVNVKQDDAYGDILVVKAP 778
           E  T +E +R F++IL L T+G + + Q +A+G+I +   P
Sbjct: 74  ENITKREASRGFFDILSLATEGCIGLSQTEAFGNIKIDAKP 114


>pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
           Cryo-Em Map
 pdb|3KTT|B Chain B, Atomic Model Of Bovine Tric Cct2(Beta) Subunit Derived
           From A 4.0 Angstrom Cryo-Em Map
 pdb|4A0O|A Chain A, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
           (Apo) State
 pdb|4A0O|B Chain B, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
           (Apo) State
 pdb|4A0O|C Chain C, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
           (Apo) State
 pdb|4A0O|D Chain D, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
           (Apo) State
 pdb|4A0O|E Chain E, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
           (Apo) State
 pdb|4A0O|F Chain F, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
           (Apo) State
 pdb|4A0O|G Chain G, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
           (Apo) State
 pdb|4A0O|H Chain H, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
           (Apo) State
 pdb|4A0O|I Chain I, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
           (Apo) State
 pdb|4A0O|J Chain J, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
           (Apo) State
 pdb|4A0O|K Chain K, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
           (Apo) State
 pdb|4A0O|L Chain L, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
           (Apo) State
 pdb|4A0O|M Chain M, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
           (Apo) State
 pdb|4A0O|N Chain N, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
           (Apo) State
 pdb|4A0O|O Chain O, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
           (Apo) State
 pdb|4A0O|P Chain P, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
           (Apo) State
 pdb|4A0V|A Chain A, Model Refined Against The Symmetry-Free Cryo-Em Map Of
           Tric- Amp-Pnp
 pdb|4A0V|B Chain B, Model Refined Against The Symmetry-Free Cryo-Em Map Of
           Tric- Amp-Pnp
 pdb|4A0V|C Chain C, Model Refined Against The Symmetry-Free Cryo-Em Map Of
           Tric- Amp-Pnp
 pdb|4A0V|D Chain D, Model Refined Against The Symmetry-Free Cryo-Em Map Of
           Tric- Amp-Pnp
 pdb|4A0V|E Chain E, Model Refined Against The Symmetry-Free Cryo-Em Map Of
           Tric- Amp-Pnp
 pdb|4A0V|F Chain F, Model Refined Against The Symmetry-Free Cryo-Em Map Of
           Tric- Amp-Pnp
 pdb|4A0V|G Chain G, Model Refined Against The Symmetry-Free Cryo-Em Map Of
           Tric- Amp-Pnp
 pdb|4A0V|H Chain H, Model Refined Against The Symmetry-Free Cryo-Em Map Of
           Tric- Amp-Pnp
 pdb|4A0V|I Chain I, Model Refined Against The Symmetry-Free Cryo-Em Map Of
           Tric- Amp-Pnp
 pdb|4A0V|J Chain J, Model Refined Against The Symmetry-Free Cryo-Em Map Of
           Tric- Amp-Pnp
 pdb|4A0V|K Chain K, Model Refined Against The Symmetry-Free Cryo-Em Map Of
           Tric- Amp-Pnp
 pdb|4A0V|L Chain L, Model Refined Against The Symmetry-Free Cryo-Em Map Of
           Tric- Amp-Pnp
 pdb|4A0V|M Chain M, Model Refined Against The Symmetry-Free Cryo-Em Map Of
           Tric- Amp-Pnp
 pdb|4A0V|N Chain N, Model Refined Against The Symmetry-Free Cryo-Em Map Of
           Tric- Amp-Pnp
 pdb|4A0V|O Chain O, Model Refined Against The Symmetry-Free Cryo-Em Map Of
           Tric- Amp-Pnp
 pdb|4A0V|P Chain P, Model Refined Against The Symmetry-Free Cryo-Em Map Of
           Tric- Amp-Pnp
 pdb|4A0W|A Chain A, Model Built Against Symmetry-Free Cryo-Em Map Of
           Tric-Adp-Alfx
 pdb|4A0W|B Chain B, Model Built Against Symmetry-Free Cryo-Em Map Of
           Tric-Adp-Alfx
 pdb|4A0W|C Chain C, Model Built Against Symmetry-Free Cryo-Em Map Of
           Tric-Adp-Alfx
 pdb|4A0W|D Chain D, Model Built Against Symmetry-Free Cryo-Em Map Of
           Tric-Adp-Alfx
 pdb|4A0W|E Chain E, Model Built Against Symmetry-Free Cryo-Em Map Of
           Tric-Adp-Alfx
 pdb|4A0W|F Chain F, Model Built Against Symmetry-Free Cryo-Em Map Of
           Tric-Adp-Alfx
 pdb|4A0W|G Chain G, Model Built Against Symmetry-Free Cryo-Em Map Of
           Tric-Adp-Alfx
 pdb|4A0W|H Chain H, Model Built Against Symmetry-Free Cryo-Em Map Of
           Tric-Adp-Alfx
 pdb|4A0W|I Chain I, Model Built Against Symmetry-Free Cryo-Em Map Of
           Tric-Adp-Alfx
 pdb|4A0W|J Chain J, Model Built Against Symmetry-Free Cryo-Em Map Of
           Tric-Adp-Alfx
 pdb|4A0W|K Chain K, Model Built Against Symmetry-Free Cryo-Em Map Of
           Tric-Adp-Alfx
 pdb|4A0W|L Chain L, Model Built Against Symmetry-Free Cryo-Em Map Of
           Tric-Adp-Alfx
 pdb|4A0W|M Chain M, Model Built Against Symmetry-Free Cryo-Em Map Of
           Tric-Adp-Alfx
 pdb|4A0W|N Chain N, Model Built Against Symmetry-Free Cryo-Em Map Of
           Tric-Adp-Alfx
 pdb|4A0W|O Chain O, Model Built Against Symmetry-Free Cryo-Em Map Of
           Tric-Adp-Alfx
 pdb|4A0W|P Chain P, Model Built Against Symmetry-Free Cryo-Em Map Of
           Tric-Adp-Alfx
 pdb|4A13|A Chain A, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
 pdb|4A13|B Chain B, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
 pdb|4A13|C Chain C, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
 pdb|4A13|D Chain D, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
 pdb|4A13|E Chain E, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
 pdb|4A13|F Chain F, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
 pdb|4A13|G Chain G, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
 pdb|4A13|H Chain H, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
 pdb|4A13|I Chain I, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
 pdb|4A13|J Chain J, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
 pdb|4A13|K Chain K, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
 pdb|4A13|L Chain L, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
 pdb|4A13|M Chain M, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
 pdb|4A13|N Chain N, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
 pdb|4A13|O Chain O, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
 pdb|4A13|P Chain P, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
          Length = 513

 Score = 30.8 bits (68), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 389 GATTPEFMVVQTPATKECARISRKRKCCFDDVTVFPNDVMRQCIQDASDLVSKRRKVPRT 448
           GAT  + + V  PA K    +SR +     D T     +  + +++A  L++K+   P+T
Sbjct: 54  GATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIH-PQT 112

Query: 449 VLAAWK 454
           ++A W+
Sbjct: 113 IIAGWR 118


>pdb|4I99|C Chain C, Crystal Structure Of The Smchead Bound To The C-winged
           Helix Domain Of Scpa
 pdb|4I99|D Chain D, Crystal Structure Of The Smchead Bound To The C-winged
           Helix Domain Of Scpa
          Length = 87

 Score = 30.0 bits (66), Expect = 5.0,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 25/45 (55%)

Query: 731 IKLLPLLEGRTVKETARIFYEILVLQTKGIVNVKQDDAYGDILVV 775
           IK   L+     K  AR F  +L L+  G V + Q++ +G+ILVV
Sbjct: 41  IKFWDLVPDVEPKIIARTFLYLLFLENMGRVEIIQEEPFGEILVV 85


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.129    0.369 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,591,764
Number of Sequences: 62578
Number of extensions: 912620
Number of successful extensions: 1584
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1571
Number of HSP's gapped (non-prelim): 22
length of query: 787
length of database: 14,973,337
effective HSP length: 107
effective length of query: 680
effective length of database: 8,277,491
effective search space: 5628693880
effective search space used: 5628693880
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)