BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003912
(787 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FQ20|SCC12_ARATH Sister chromatid cohesion 1 protein 2 OS=Arabidopsis thaliana
GN=SYN2 PE=2 SV=2
Length = 810
Score = 355 bits (911), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 286/869 (32%), Positives = 422/869 (48%), Gaps = 144/869 (16%)
Query: 1 MFYSRSLLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEELDVMTYRVLAYL 60
MFYS L+SRKGPLGAIWVAAY FK+LKK+QV T+IPSSVD+IL++ELD +TYRVLAYL
Sbjct: 1 MFYSHCLVSRKGPLGAIWVAAYFFKKLKKSQVKATHIPSSVDQILQKELDALTYRVLAYL 60
Query: 61 LLGLVRIYSKKVEYLFDDCNDAVVKINNFLVSEKSMKNLG-NLCAPY-C-SITLPESFEL 117
LLG+VRIYSKKV++LFDDCN A++ + F+ E++ + G +L A C SI LPE FEL
Sbjct: 61 LLGVVRIYSKKVDFLFDDCNKALIGVKEFVAKERNREKTGVSLPASIECFSIALPERFEL 120
Query: 118 DAFDLEILEDISGENAVPLEQITLKDGASAAAGKGHYSLSKYCCKE--YAAWDDSFSGDY 175
DAFDL +LED G N P E ITLKDG+ YS+ ++ +E + ++FS ++
Sbjct: 121 DAFDLGVLEDFHGGNVKPHEDITLKDGSQETERMDMYSMERFDMEEDLLFTFHETFSTNH 180
Query: 176 SPADDIFSSHLMEIGM-------------VVSA--------TYSNLNANMENLQSNNDGG 214
+ +H ME+ VV A + + NA+ +D
Sbjct: 181 NENKHESFAHDMELDAENVRDTTEEASVRVVEAEPLDSNEPSRDHQNASRHREDPESDDI 240
Query: 215 VTEPIEPVGEKHQTNEDMKAAETAQSEKRLEKLQDNSFHGVEEESLDPIKLCGKDHRSDG 274
+ EP Q +ED++ A+ + + + + + +D + G + DG
Sbjct: 241 LLEP--------QMSEDIRIAQEEDTVR-------ETICTIVQRLVDSHESSGDNLHRDG 285
Query: 275 EQTMVPDIAQLEKETCQATSKD--------INKNITMLQ----ASTEKLCEHEVPQVCS- 321
+ +K +C+ D I + I ++ +T E E+P++ +
Sbjct: 286 HTENLESEKTSKKTSCEEMQHDRSLPSECGIPEAIHGIEDQPSGATRINGEKEIPEMSTL 345
Query: 322 ----------------GVEMCYGSKEELPKQVELSGEEHHSNTEQMKVMEISSRNNECQV 365
GVE C E EL H S+ EQ + E++ +E
Sbjct: 346 EKPEPVSVTGSRDLQEGVEKCRDHNEAEMADFELF---HGSHKEQSETSEVNLHGSEKGF 402
Query: 366 MK----REDPLS--------VTVDATPQSKFLDASGATTPEFMVVQTPATKECARISRKR 413
+ +DP S VTV S+ + G T+P+F ++ TPA KE +R+SRKR
Sbjct: 403 LSDMTVSKDPSSEFNATDTPVTVTPKTPSRLKISEGGTSPQFSIIPTPAAKESSRVSRKR 462
Query: 414 KCCFDDVTVFPNDVMRQCIQDASDLVSKRRKVPRTVLAAWKASRISNLSQGFLLPLLPCI 473
KC DD + PN VM++ I+D+S L++KRR VP T + R +N + FL PL+
Sbjct: 463 KCLIDDEVIIPNKVMKEMIEDSSKLLAKRRNVPHTDCPERRTKRFANPFRSFLEPLIQYG 522
Query: 474 SLELRAFLCQ-------------ERLKIPETAKSVELLEPELPTVHKSLEKMAITS---G 517
S +L++ CQ + KI + L P V S ++ T
Sbjct: 523 SSDLQSLFCQPIKLKNWATTGTPKDTKIARHKEKSSLDTVRSPGVILSSDQTENTQEIME 582
Query: 518 TPIGRSSQNMGIAPNTRTGISLEKMAVAPGTPTGRSSEKMVVAPETPTGGSSEKMVVAPE 577
TP + + + +S+E A + + T +E A ETP S V+APE
Sbjct: 583 TPQAAALAGLKVTAGNSNVVSVEMGASSTTSGTAHQTEN---AAETPVKPS----VIAPE 635
Query: 578 TPTCRSPEKRAFAPDTPTGRSSEKMAVAPATPTGRS-SETMAIAPDTLTVKSSELIAMTI 636
TP R+ E+ AP+TP SE++ +AP TP S S+ P T KS
Sbjct: 636 TP-VRTSEQTVIAPETPV--VSEQVEIAPETPVRESMSKRFFKDPGTCYKKSRP------ 686
Query: 637 ESPIFLSVPSRSFETPENAHSIAVETLADSYATPKKDLASSKDEDFDLIFMNEES-NFGE 695
+ P SFE + + + ++ D D I MN+E N E
Sbjct: 687 ------ASPFTSFEEHPSVYYV-------------------ENRDLDTILMNDEQVNADE 721
Query: 696 VDRQESYGFSARTRMVAKYLHRRFLCHKERREDEAIKLLPLLEGRTVKETARIFYEILVL 755
+ +S+RTR VAK+L + FL +ER E+E + LL L GRT KE+AR+FYE LVL
Sbjct: 722 RQDLQQETWSSRTRNVAKFLEKTFLEQREREEEEKVSLLQLCRGRTQKESARLFYETLVL 781
Query: 756 QTKGIVNVKQDDAYGDILVVKAPWWDQSC 784
+TKG V VKQ+ Y D+ +++ ++C
Sbjct: 782 KTKGYVEVKQNHPYSDVFLMRVSRPQKAC 810
>sp|Q9FQ19|SCC13_ARATH Sister chromatid cohesion 1 protein 3 OS=Arabidopsis thaliana
GN=SYN3 PE=2 SV=2
Length = 693
Score = 113 bits (282), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 57/123 (46%), Positives = 79/123 (64%), Gaps = 1/123 (0%)
Query: 1 MFYSRSLLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEELDVMTYRVLAYL 60
MFYS +LL+RKGPLG +W AA+ +RLKK+Q NIP +VD I+ E+ + R ++L
Sbjct: 1 MFYSHTLLARKGPLGTVWCAAHVHQRLKKSQYTSINIPDTVDNIMFPEV-PLALRTSSHL 59
Query: 61 LLGLVRIYSKKVEYLFDDCNDAVVKINNFLVSEKSMKNLGNLCAPYCSITLPESFELDAF 120
L+G+VRIYSKKV+YL++D N + VS + AP S+TLP++ LD F
Sbjct: 60 LVGVVRIYSKKVDYLYNDWNLLNTWVAKAFVSTQVNLPEDARQAPPESVTLPQALNLDEF 119
Query: 121 DLE 123
DLE
Sbjct: 120 DLE 122
Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 55/102 (53%), Gaps = 2/102 (1%)
Query: 679 DEDFDLIFMNEESNFGEVDRQESYGFSARTRMVAKYLHRRFLCHKERREDEA--IKLLPL 736
DE+ + + S G Q+S + R R +A+YL +R + + L +
Sbjct: 584 DEELYFLEVGGNSPVGTPASQDSAALTGRARALAQYLKQRSSSSPTTSSHPSGDLSLSEI 643
Query: 737 LEGRTVKETARIFYEILVLQTKGIVNVKQDDAYGDILVVKAP 778
L G+T K AR+F+E LVL+++G+++++QD YGDI + P
Sbjct: 644 LAGKTRKLAARMFFETLVLKSRGLIDMQQDRPYGDIALKLMP 685
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 67/131 (51%), Gaps = 4/131 (3%)
Query: 396 MVVQTPATKECARISRKRKCCFDDVTVFPNDVMRQCIQDASDLVSKRRKVPRTVLAAWKA 455
+V+Q + R +RKRK FD VTV N + + ++D SD + KR+K+P + L W+
Sbjct: 340 LVLQPSPPPQPQRRARKRKN-FDGVTVLTNKNISERLKDPSDTLRKRKKMPSSKLKFWRM 398
Query: 456 SRISNLSQGFLLPLLPCISLELRAFLCQERL-KIPETAKSVELLEPELPTVHKSLE-KMA 513
+ S Q F PL S +LR ++ + P A S E L PE +V + E ++
Sbjct: 399 NNQSRKDQNFNEPLFTGFSDDLRNVFEKDYVASKPHLAVSDETL-PEPASVSPTREAEVE 457
Query: 514 ITSGTPIGRSS 524
I +PI S+
Sbjct: 458 INPVSPIPDST 468
>sp|Q61550|RAD21_MOUSE Double-strand-break repair protein rad21 homolog OS=Mus musculus
GN=Rad21 PE=1 SV=3
Length = 635
Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 123/243 (50%), Gaps = 39/243 (16%)
Query: 1 MFYSRSLLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEELDVMTYRVLAYL 60
MFY+ +LS++GPL IW+AA+ K+L KA VFE N+ SSV+ I+ ++ M R +L
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVK-MALRTSGHL 59
Query: 61 LLGLVRIYSKKVEYLFDDCNDAVVKINNFLVSEKSMKNLG--NLCAPYCSITLPESFELD 118
LLG+VRIY +K +YL DCN+A +KI + + +L N A Y +ITLPE F
Sbjct: 60 LLGVVRIYHRKAKYLLADCNEAFIKIK--MAFRPGVVDLPEENREAAYNAITLPEEFH-- 115
Query: 119 AFD--LEILEDIS-----GENAVPLEQITLKDGASAAA-----GKGHYSL-SKYCCKEYA 165
FD L L+DI N +E+IT+++ + G + + + +E +
Sbjct: 116 DFDQPLPDLDDIDVAQQFSLNQSRVEEITMREEVGNISILQENDFGDFGMDDREIMREGS 175
Query: 166 AWDDSFSGDYSPADDIFSSHLMEIGMVVSATYSNLNANM-----------ENLQSNNDGG 214
A++D D + S+ + + + SNLN M +N NDGG
Sbjct: 176 AFEDD--------DMLVSTSASNLLLEPEQSTSNLNEKMNHLEYEDQYKDDNFGEGNDGG 227
Query: 215 VTE 217
+ +
Sbjct: 228 ILD 230
Score = 37.0 bits (84), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 699 QESYGFSARTRMVAKYLHRRFLCHKERREDEAIKLLPLLEGRTVKETARIFYEILVLQTK 758
QE ++ RT+ + L R + E+I LL L K+ A FY LVL+ +
Sbjct: 555 QEERRWNKRTQQMLHGLQRALA----KTGAESISLLELCRNTNRKQAAAKFYSFLVLKKQ 610
Query: 759 GIVNVKQDDAYGDILVVKAP 778
+ + Q++ Y DI+ P
Sbjct: 611 QAIELTQEEPYSDIIATPGP 630
>sp|O60216|RAD21_HUMAN Double-strand-break repair protein rad21 homolog OS=Homo sapiens
GN=RAD21 PE=1 SV=2
Length = 631
Score = 103 bits (256), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 123/243 (50%), Gaps = 39/243 (16%)
Query: 1 MFYSRSLLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEELDVMTYRVLAYL 60
MFY+ +LS++GPL IW+AA+ K+L KA VFE N+ SSV+ I+ ++ M R +L
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVK-MALRTSGHL 59
Query: 61 LLGLVRIYSKKVEYLFDDCNDAVVKINNFLVSEKSMKNLG--NLCAPYCSITLPESFELD 118
LLG+VRIY +K +YL DCN+A +KI + + +L N A Y +ITLPE F
Sbjct: 60 LLGVVRIYHRKAKYLLADCNEAFIKIK--MAFRPGVVDLPEENREAAYNAITLPEEFH-- 115
Query: 119 AFD--LEILEDIS-----GENAVPLEQITLKDGASAAA-----GKGHYSL-SKYCCKEYA 165
FD L L+DI N +E+IT+++ + G + + + +E +
Sbjct: 116 DFDQPLPDLDDIDVAQQFSLNQSRVEEITMREEVGNISILQENDFGDFGMDDREIMREGS 175
Query: 166 AWDDSFSGDYSPADDIFSSHLMEIGMVVSATYSNLNANM-----------ENLQSNNDGG 214
A++D D + S+ + + + SNLN + +N NDGG
Sbjct: 176 AFEDD--------DMLVSTTTSNLLLESEQSTSNLNEKINHLEYEDQYKDDNFGEGNDGG 227
Query: 215 VTE 217
+ +
Sbjct: 228 ILD 230
Score = 37.0 bits (84), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 699 QESYGFSARTRMVAKYLHRRFLCHKERREDEAIKLLPLLEGRTVKETARIFYEILVLQTK 758
QE ++ RT+ + L R + E+I LL L K+ A FY LVL+ +
Sbjct: 551 QEERRWNKRTQQMLHGLQRALA----KTGAESISLLELCRNTNRKQAAAKFYSFLVLKKQ 606
Query: 759 GIVNVKQDDAYGDILVVKAP 778
+ + Q++ Y DI+ P
Sbjct: 607 QAIELTQEEPYSDIIATPGP 626
>sp|Q3SWX9|RAD21_BOVIN Double-strand-break repair protein rad21 homolog OS=Bos taurus
GN=RAD21 PE=2 SV=1
Length = 630
Score = 102 bits (253), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 123/243 (50%), Gaps = 39/243 (16%)
Query: 1 MFYSRSLLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEELDVMTYRVLAYL 60
MFY+ +LS++GPL IW+AA+ K+L KA VFE N+ SSV+ I+ ++ M R +L
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIISPKVK-MALRTSGHL 59
Query: 61 LLGLVRIYSKKVEYLFDDCNDAVVKINNFLVSEKSMKNLG--NLCAPYCSITLPESFELD 118
LLG+VRIY +K +YL DCN+A +KI + + +L N A Y +ITLPE F
Sbjct: 60 LLGVVRIYHRKAKYLLADCNEAFIKIK--MAFRPGVVDLPEENREAAYNAITLPEEFH-- 115
Query: 119 AFD--LEILEDIS-----GENAVPLEQITLKDGASAAA-----GKGHYSL-SKYCCKEYA 165
FD L L+DI N +E+IT+++ + G + + + +E +
Sbjct: 116 DFDQPLPDLDDIDVAQQFSLNQSRVEEITMREEVGNISILQENDFGDFGMDDREIMREGS 175
Query: 166 AWDDSFSGDYSPADDIFSSHLMEIGMVVSATYSNLNANM-----------ENLQSNNDGG 214
A++D D + S+ + + + SNLN + +N NDGG
Sbjct: 176 AFEDD--------DMLASTGASNLLLEPEQSTSNLNEKINHLEYEDQYKDDNFGEGNDGG 227
Query: 215 VTE 217
+ +
Sbjct: 228 ILD 230
Score = 37.4 bits (85), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 699 QESYGFSARTRMVAKYLHRRFLCHKERREDEAIKLLPLLEGRTVKETARIFYEILVLQTK 758
QE ++ RT+ + L R + E+I LL L K+ A FY LVL+ +
Sbjct: 550 QEERRWNKRTQQMLHGLQRALA----KTGAESISLLELCRNTNRKQAAAKFYSFLVLKKQ 605
Query: 759 GIVNVKQDDAYGDILVVKAP 778
+ + Q++ Y DI+ P
Sbjct: 606 QAIELTQEEPYSDIIATPGP 625
>sp|O93310|RAD21_XENLA Double-strand-break repair protein rad21 homolog OS=Xenopus laevis
GN=rad21 PE=1 SV=1
Length = 629
Score = 100 bits (249), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 92/155 (59%), Gaps = 14/155 (9%)
Query: 1 MFYSRSLLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEELDVMTYRVLAYL 60
MFY+ +LS++GPL IW+AA+ K+L KA VFE N+ SSV+ I+ ++ M R +L
Sbjct: 1 MFYAHFVLSKRGPLAKIWLAAHWDKKLTKAHVFECNLESSVESIICPKVK-MALRTSGHL 59
Query: 61 LLGLVRIYSKKVEYLFDDCNDAVVKINNFLVSEKSMKNLG--NLCAPYCSITLPESFELD 118
LLG+VRIY +K +YL DCN+A +KI + + +L N A Y +ITLPE F
Sbjct: 60 LLGVVRIYHRKAKYLLADCNEAFIKIK--MAFRPGVVDLPEENREAAYNAITLPEEFH-- 115
Query: 119 AFD--LEILEDIS-----GENAVPLEQITLKDGAS 146
FD L L+DI N +E+IT+++ S
Sbjct: 116 DFDQPLPDLDDIDVAQQFSLNQSRVEEITMREEVS 150
Score = 35.4 bits (80), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 699 QESYGFSARTRMVAKYLHRRFLCHKERREDEAIKLLPLLEGRTVKETARIFYEILVLQTK 758
QE ++ RT+ + L R + E+I LL L K+ A FY LVL+ +
Sbjct: 549 QEERRWNKRTQQMLHGLQRVL----AKTGAESISLLDLCRNTNRKQAAAKFYSFLVLKKQ 604
Query: 759 GIVNVKQDDAYGDILVVKAP 778
+ + Q + Y DI+ P
Sbjct: 605 QAIELTQREPYSDIVATPGP 624
>sp|D2HSB3|RD21L_AILME Double-strand-break repair protein rad21-like protein 1
OS=Ailuropoda melanoleuca GN=RAD21L1 PE=3 SV=1
Length = 554
Score = 99.8 bits (247), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 94/154 (61%), Gaps = 14/154 (9%)
Query: 1 MFYSRSLLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEELDVMTYRVLAYL 60
MFY+ L+S++GPL IW+AA+ K+L KA VFE N+ ++++IL ++ + R +L
Sbjct: 1 MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIEKILSSKVKI-ALRTSGHL 59
Query: 61 LLGLVRIYSKKVEYLFDDCNDAVVKINNFLVSEKSMKNL--GNLCAPYCSITLPESFELD 118
LLG+VRIY++K +YL DCN+A++K+ + + +L N A Y +ITLPE F
Sbjct: 60 LLGVVRIYNRKAKYLLADCNEALLKMK--MTFRPGLVDLPKENFEAAYNAITLPEEFH-- 115
Query: 119 AFD------LEILEDISGENAVPLEQITLKDGAS 146
FD +++ E + + P E+ITL++ S
Sbjct: 116 DFDTQNVNAIDVSEHFTQNQSKP-EEITLREDYS 148
>sp|A2AU37|RD21L_MOUSE Double-strand-break repair protein rad21-like protein 1 OS=Mus
musculus GN=Rad21l1 PE=1 SV=2
Length = 552
Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 91/155 (58%), Gaps = 16/155 (10%)
Query: 1 MFYSRSLLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEELDVMTYRVLAYL 60
MFY+ L+S++GPL IW+AA+ K+L KA VFE N+ ++ +I+ ++ + R +L
Sbjct: 1 MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIQKIISPKVKI-ALRTSGHL 59
Query: 61 LLGLVRIYSKKVEYLFDDCNDAVVKINNFLVSEKSMKNL--GNLCAPYCSITLPESFELD 118
LLG+VRIY++K +YL DC++A +K+ + + +L N A Y +ITLPE F
Sbjct: 60 LLGVVRIYNRKAKYLLADCSEAFLKMK--MTFRPGLVDLPKENFEAAYNTITLPEEFH-- 115
Query: 119 AFDLEILE----DIS---GENAVPLEQITLKDGAS 146
D EI DIS +N E+ITL++ S
Sbjct: 116 --DFEIYNINEIDISEPLAQNQSRPEEITLREEYS 148
>sp|P30776|RAD21_SCHPO Cohesin subunit rad21 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rad21 PE=1 SV=1
Length = 628
Score = 94.4 bits (233), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 59/86 (68%)
Query: 1 MFYSRSLLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEELDVMTYRVLAYL 60
MFYS ++LS+KGPL +W+AA+ K+L K Q T+I SV I+ EE M R+ L
Sbjct: 1 MFYSEAILSKKGPLAKVWLAAHWEKKLSKVQTLHTSIEQSVHAIVTEETAPMALRLSGQL 60
Query: 61 LLGLVRIYSKKVEYLFDDCNDAVVKI 86
+LG+VRIYS+K YL +DC +A++++
Sbjct: 61 MLGVVRIYSRKARYLLEDCTEALMRL 86
Score = 35.0 bits (79), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 727 EDEAIKLLPLLEGRTVKETARIFYEILVLQTKGIVNVKQDDAYGDILVVKA 777
E E + L G +E ++F+++LVL TK +++VKQD A + + + A
Sbjct: 569 EGEKVSFQTLSAGCNREEAVQLFFDVLVLATKDVISVKQDVAIQNEITLTA 619
>sp|Q9H4I0|RD21L_HUMAN Double-strand-break repair protein rad21-like protein 1 OS=Homo
sapiens GN=RAD21L1 PE=2 SV=3
Length = 556
Score = 94.4 bits (233), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 88/150 (58%), Gaps = 10/150 (6%)
Query: 1 MFYSRSLLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEELDVMTYRVLAYL 60
MFY+ L+S++GPL IW+AA+ K+L KA VFE N+ ++++IL ++ + R +L
Sbjct: 1 MFYTHVLMSKRGPLAKIWLAAHWEKKLTKAHVFECNLEITIEKILSPKVKI-ALRTSGHL 59
Query: 61 LLGLVRIYSKKVEYLFDDCNDAVVKINNFLVSEKSMKNLGNLCAPYCSITLPESFELDAF 120
LLG+VRIY++K +YL DC++A +K+ N A Y +ITLPE F F
Sbjct: 60 LLGVVRIYNRKAKYLLADCSEAFLKMKMTFCPGLVDLPKENFEASYNAITLPEEFH--DF 117
Query: 121 D------LEILEDISGENAVPLEQITLKDG 144
D +++ E + + P E+ITL++
Sbjct: 118 DTQNMNAIDVSEHFTQNQSRP-EEITLREN 146
>sp|Q9S7T7|SCC11_ARATH Sister chromatid cohesion 1 protein 1 OS=Arabidopsis thaliana
GN=SYN1 PE=2 SV=2
Length = 627
Score = 70.5 bits (171), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 70/127 (55%), Gaps = 5/127 (3%)
Query: 6 SLLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEELDVMTYRVLAYLLLGLV 65
+LL+RK PLG IW+AA ++ + ++ + +I +EIL + M R+ L+ G+V
Sbjct: 16 TLLARKAPLGQIWMAATLHAKINRKKLDKLDIIQICEEILNPSVP-MALRLSGILMGGVV 74
Query: 66 RIYSKKVEYLFDDCNDAVVKINNFL----VSEKSMKNLGNLCAPYCSITLPESFELDAFD 121
+Y +KV+ LFDD N +V+IN V + ++ G A ++TLPE+ E D D
Sbjct: 75 IVYERKVKLLFDDVNRFLVEINGAWRTKSVPDPTLLPKGKTHARKEAVTLPENEEADFGD 134
Query: 122 LEILEDI 128
E ++
Sbjct: 135 FEQTRNV 141
Score = 41.2 bits (95), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 24/33 (72%)
Query: 746 ARIFYEILVLQTKGIVNVKQDDAYGDILVVKAP 778
A++F++ VL T+G++ V Q + YGDIL+ + P
Sbjct: 593 AKLFFQSCVLATRGVIKVNQAEPYGDILIARGP 625
>sp|Q12158|SCC1_YEAST Sister chromatid cohesion protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=MCD1 PE=1 SV=1
Length = 566
Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
Query: 7 LLSRKGPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEE--------ELDVMTYRVLA 58
L + KGPL IW+A+ + + V +T+I S EI + + + +T R
Sbjct: 14 LATNKGPLAQIWLAS-NMSNIPRGSVIQTHIAESAKEIAKASGCDDESGDNEYITLRTSG 72
Query: 59 YLLLGLVRIYSKKVEYLFDDCNDAVVKINNFLVSEKSM 96
LL G+VR+YSK+ +L D D + KI+ + + M
Sbjct: 73 ELLQGIVRVYSKQATFLLTDIKDTLTKISMLFKTSQKM 110
Score = 34.7 bits (78), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 738 EGRTVKETARIFYEILVLQTKGIVNVKQDDAYGDILVVKAP 778
E T +E +R F++IL L T+G + + Q +A+G+I + P
Sbjct: 517 ENITKREASRGFFDILSLATEGCIGLSQTEAFGNIKIDAKP 557
>sp|O14798|TR10C_HUMAN Tumor necrosis factor receptor superfamily member 10C OS=Homo
sapiens GN=TNFRSF10C PE=1 SV=3
Length = 259
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%)
Query: 510 EKMAITSGTPIGRSSQNMGIAPNTRTGISLEKMAVAPGTPTGRSSEKMVVAPETPTGGSS 569
E M + GTP + + M +P T + E M +PGTP + E M +P TP +
Sbjct: 166 ETMNTSPGTPAPAAEETMNTSPGTPAPAAEETMTTSPGTPAPAAEETMTTSPGTPAPAAE 225
Query: 570 EKMVVAPETP 579
E M+ +P TP
Sbjct: 226 ETMITSPGTP 235
Score = 43.5 bits (101), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%)
Query: 540 EKMAVAPGTPTGRSSEKMVVAPETPTGGSSEKMVVAPETPTCRSPEKRAFAPDTPTGRSS 599
E M +PGTP + E M +P TP + E M +P TP + E +P TP +
Sbjct: 166 ETMNTSPGTPAPAAEETMNTSPGTPAPAAEETMTTSPGTPAPAAEETMTTSPGTPAPAAE 225
Query: 600 EKMAVAPATP 609
E M +P TP
Sbjct: 226 ETMITSPGTP 235
Score = 40.0 bits (92), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%)
Query: 525 QNMGIAPNTRTGISLEKMAVAPGTPTGRSSEKMVVAPETPTGGSSEKMVVAPETPTCRSP 584
+ M +P T + E M +PGTP + E M +P TP + E M +P TP +
Sbjct: 166 ETMNTSPGTPAPAAEETMNTSPGTPAPAAEETMTTSPGTPAPAAEETMTTSPGTPAPAAE 225
Query: 585 EKRAFAPDTP 594
E +P TP
Sbjct: 226 ETMITSPGTP 235
>sp|O95072|REC8_HUMAN Meiotic recombination protein REC8 homolog OS=Homo sapiens GN=REC8
PE=2 SV=1
Length = 547
Score = 42.7 bits (99), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 13/101 (12%)
Query: 1 MFYSRSLLSRK-GPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEEL---------- 49
MFY ++L R G IW+AA RL K + N+ + +EIL L
Sbjct: 1 MFYYPNVLQRHTGCFATIWLAATRGSRLVKREYLRVNVVKTCEEILNYVLVRVQPPQPGL 60
Query: 50 --DVMTYRVLAYLLLGLVRIYSKKVEYLFDDCNDAVVKINN 88
+ + A L +G++R+YS++ +YL +D + +++
Sbjct: 61 PRPRFSLYLSAQLQIGVIRVYSQQCQYLVEDIQHILERLHR 101
Score = 38.9 bits (89), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 746 ARIFYEILVLQTKGIVNVKQDDAYGDILVVKAP 778
AR+FY +LVL + I++VKQ+ YG +L+ P
Sbjct: 512 ARVFYLLLVLSAQQILHVKQEKPYGRLLIQPGP 544
>sp|Q12188|REC8_YEAST Meiotic recombination protein REC8 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=REC8 PE=1 SV=1
Length = 680
Score = 40.4 bits (93), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 27 LKKAQVFETNIPSSVDEILEEELDVMTYRVLAYLLLGLVRIYSKKVEYLFDDCNDAVVKI 86
+KK + +IP + DEI E D + R ++ LL G+ Y+KK EY+ +D N +V++
Sbjct: 53 VKKKDIVNISIPKTCDEIQNFEND-FSLRYISNLLYGVTICYNKKTEYVLNDLNHLLVQL 111
>sp|Q6AYJ4|REC8_RAT Meiotic recombination protein REC8 homolog OS=Rattus norvegicus
GN=Rec8 PE=1 SV=1
Length = 593
Score = 40.0 bits (92), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 13/101 (12%)
Query: 1 MFYSRSLLSRK-GPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEEL---------- 49
MFY ++L R G IW+AA RL K + + N+ + +EIL L
Sbjct: 1 MFYYPNVLQRHTGCFATIWLAATRGSRLVKREYLKVNVVKTCEEILNYVLVRVQPPMPGL 60
Query: 50 --DVMTYRVLAYLLLGLVRIYSKKVEYLFDDCNDAVVKINN 88
+ + A L +G++R+Y ++ +YL +D + ++
Sbjct: 61 PRPRFSLYLSAQLQIGVIRVYFQQCQYLVEDIQHILEHLHR 101
Score = 35.8 bits (81), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 726 REDEAIKLLPLLEGRTVKETARIFYEILVLQTKGIVNVKQDDAYGDILVVKAP 778
RE + L+P L R K +R+FY +LVL + I+ V Q YG +L+ P
Sbjct: 540 REPDFSSLVPPLSSR--KLASRVFYLLLVLSAQKILLVDQQKPYGRLLIRLGP 590
>sp|Q8C5S7|REC8_MOUSE Meiotic recombination protein REC8 homolog OS=Mus musculus GN=Rec8
PE=1 SV=1
Length = 591
Score = 39.3 bits (90), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 13/101 (12%)
Query: 1 MFYSRSLLSRK-GPLGAIWVAAYCFKRLKKAQVFETNIPSSVDEILEEEL---------- 49
MFY ++L R G IW+AA RL K + N+ + +EIL L
Sbjct: 1 MFYYPNVLQRHTGCFATIWLAATRGSRLVKREYLNVNVVKTCEEILNYVLVRVQPPVAGL 60
Query: 50 --DVMTYRVLAYLLLGLVRIYSKKVEYLFDDCNDAVVKINN 88
+ + A L +G++R+Y ++ +YL +D + ++
Sbjct: 61 PRPRFSLYLSAQLQIGVIRVYFQQCQYLVEDIQHILEHLHR 101
Score = 37.4 bits (85), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 733 LLPLLEGRTVKETARIFYEILVLQTKGIVNVKQDDAYGDILVVKAP 778
L+P L R K +R+FY +LVL T+ I+ V+Q YG +L+ P
Sbjct: 545 LVPPLSPR--KLASRVFYLLLVLSTQKILLVEQQKPYGPLLIRPGP 588
>sp|P36626|REC8_SCHPO Meiotic recombination protein rec8 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rec8 PE=1 SV=2
Length = 561
Score = 38.9 bits (89), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 55/107 (51%), Gaps = 9/107 (8%)
Query: 1 MFYSRSLLSR-KGPLGAIWVAA-----YCFKRLKKAQVFETNIPSSVDEILEEELDVMTY 54
MFY++ +L++ KG +G IW+AA + ++L K + +I + D + + +
Sbjct: 1 MFYNQDVLTKEKGGMGVIWLAATLGSKHSLRKLHKKDIMSVDIDEACD-FVAFSPEPLAL 59
Query: 55 RVLAYLLLGLVRIYSKKVEYLFDDCNDAVVKINNFL--VSEKSMKNL 99
R+ + L++G+ R+++ + + + +++ L + K KN+
Sbjct: 60 RLSSNLMIGVTRVWAHQYSFFHSQVSTLHLRVRKELDHFTSKPFKNI 106
>sp|A7H9F3|IF2_ANADF Translation initiation factor IF-2 OS=Anaeromyxobacter sp. (strain
Fw109-5) GN=infB PE=3 SV=1
Length = 970
Score = 37.0 bits (84), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 44/117 (37%), Gaps = 8/117 (6%)
Query: 545 APGTPTGRSSEKMVVAPETPTGGSSEKMVVAPETPTCR--SPEKRAFAPDTP--TGRSSE 600
AP P G V P P G V P P R P R P P G+ +
Sbjct: 180 APSVPAGAQPPGAPVRPAAP-GVRPAAPGVRPAAPGVRPTGPGVRPSVPGGPRAPGQPTA 238
Query: 601 KMAVAPATPTGRSSETMAIAPDTLTVKSSELIAMTIESPIFLSVPSRSFETPENAHS 657
MA AP P + + A PD T++ + A+ I P+ VP R P A +
Sbjct: 239 PMAAAPHGPGAQPGQPAAPGPDPRTLRPTATQAVVISRPL---VPVRRVTPPTGART 292
>sp|A8TX70|CO6A5_HUMAN Collagen alpha-5(VI) chain OS=Homo sapiens GN=COL6A5 PE=1 SV=1
Length = 2615
Score = 36.6 bits (83), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 12/112 (10%)
Query: 372 LSVTVDATPQSKFLDASGA-TTPEFMVVQTPATKECARISRKRKC--CFDDVTVFPNDVM 428
+S TV A + FL+A G T F V+ P E + R R+C C+D FPN +
Sbjct: 1894 ISPTVFAFDERVFLEAFGFDNTGTFQVIPVPPNGENQTLERLRRCALCYD--KCFPNACI 1951
Query: 429 RQCI------QDASDLVSKRRKVPRTVLAAWKASRISNLSQGFLLPLLPCIS 474
R+ D L+ R + + A KA +S++ F + P IS
Sbjct: 1952 REAFLPEDSYMDVVFLIDNSRNIAKDEFKAVKA-LVSSVIDNFNIASDPLIS 2002
>sp|P19814|TGON3_RAT Trans-Golgi network integral membrane protein TGN38 OS=Rattus
norvegicus GN=Ttgn1 PE=1 SV=1
Length = 357
Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 47/105 (44%), Gaps = 21/105 (20%)
Query: 487 KIPETA-----KSVELLEPELPTVHKSLEKMAITSGTPIGRSSQN-MGIAPNTRTGISLE 540
K PETA ++++ L P P KS +K SG+P G S N G N TG+ +
Sbjct: 96 KHPETADAKLKETLQQLLPVDPKQEKSGQKFTKDSGSPTGGDSDNTTGGDSNKTTGVDSD 155
Query: 541 KMAVAPGT-PTGRSSEKMVVAPETPTGGSSEKMVVAPETPTCRSP 584
K + PTG ++K PTGG S K PT + P
Sbjct: 156 KTSGGDSNKPTGSDNDK-------PTGGDSNK-------PTSKVP 186
>sp|Q5U249|ELYS_XENLA Protein ELYS OS=Xenopus laevis GN=ahctf1 PE=1 SV=1
Length = 2408
Score = 35.4 bits (80), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
Query: 510 EKMAITSGTPIGRSSQNMGIAPNTRTGISLEKMAVAPGTPTGRSSEKMVVAPETPTGGSS 569
E + + TP + + + + S+E + V P TPT K++ + + S
Sbjct: 1869 EDLQVQPSTPTRGRRGRVITSDDIKESPSVEDLQVQPSTPTRGRRGKVITSDDIKEPPSV 1928
Query: 570 EKMVVAPETPTCRSPEKRAFAPDTPTGRSSEKMAVAPATPT-GRSSETM 617
E + V P TPT K + D S E + V P+TPT GR + +
Sbjct: 1929 EDLQVQPSTPTRGRKGKVITSDDIKEPLSGEDLQVQPSTPTRGRKGKVI 1977
>sp|Q8C8R3|ANK2_MOUSE Ankyrin-2 OS=Mus musculus GN=Ank2 PE=1 SV=2
Length = 3898
Score = 34.3 bits (77), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 26/102 (25%)
Query: 538 SLEKMAVAPGTPTGRSSEKMVVAPETPTGGSSEKMVVA---------PETPTCRSPEKRA 588
SL+ PG+P+G++ ++ P P+ G +EK P +P+ R+PEK A
Sbjct: 1855 SLKTERHTPGSPSGKTDKR----PPVPSSGRTEKHPPVSPGKTEKHLPGSPSIRTPEKPA 1910
Query: 589 FAPDTPTGRSSEKMAVAPA--------TPTGRSS---ETMAI 619
P + TG+ + + V+P +PT ++ ETM++
Sbjct: 1911 --PGSATGKHEKHLPVSPGKTEKQPPISPTSKTERIEETMSV 1950
>sp|Q989L5|IDI2_RHILO Isopentenyl-diphosphate delta-isomerase OS=Rhizobium loti (strain
MAFF303099) GN=fni PE=3 SV=1
Length = 351
Score = 33.9 bits (76), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 4/116 (3%)
Query: 434 DASDLVSKRRKVPRTVLAAWKASRISNLSQGFLLPLLPCISLELRAFLCQERLKIPETAK 493
D D+V RR P TV A W+ R + + LP L ++LRA L + ++ P
Sbjct: 14 DHLDIVLDRRTAPATVAAGWEYIRFEHCA----LPELDLTQIDLRASLLGKTMRAPLLIS 69
Query: 494 SVELLEPELPTVHKSLEKMAITSGTPIGRSSQNMGIAPNTRTGISLEKMAVAPGTP 549
S+ +++ L + A G + SQ + + G++ +AP P
Sbjct: 70 SMTGGVLRAEAINRHLSEAAQALGIAMCVGSQRVSLQSRNSQGLTRALRRMAPDIP 125
>sp|Q82Z12|GCH1_ENTFA GTP cyclohydrolase 1 OS=Enterococcus faecalis (strain ATCC 700802 /
V583) GN=folE PE=3 SV=1
Length = 186
Score = 33.5 bits (75), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Query: 208 QSNNDGGVTEPIEPVGEKHQTNEDMKAAETAQSEKRLEKLQDNSFHGVEEESLDPIKLCG 267
Q+ + VT +E VGE D + A + KR+ K+ F G+ E D KL
Sbjct: 6 QAQIEQAVTTILEAVGE------DTQRAGLIDTPKRVAKMYAEVFSGLTEPEFDDYKLF- 58
Query: 268 KDHRSDGEQTMVPDIA 283
D ++GE +V DIA
Sbjct: 59 -DSLNEGEMVLVKDIA 73
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.129 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 289,787,116
Number of Sequences: 539616
Number of extensions: 12361147
Number of successful extensions: 28556
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 138
Number of HSP's that attempted gapping in prelim test: 27837
Number of HSP's gapped (non-prelim): 591
length of query: 787
length of database: 191,569,459
effective HSP length: 126
effective length of query: 661
effective length of database: 123,577,843
effective search space: 81684954223
effective search space used: 81684954223
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 65 (29.6 bits)