Query 003912
Match_columns 787
No_of_seqs 219 out of 338
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 08:07:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003912.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003912hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w1w_E SCC1, sister chromatid 99.9 2.9E-24 1E-28 200.0 5.1 83 696-784 30-120 (121)
2 2vda_B Maltoporin; sugar trans 36.7 8.8 0.0003 27.3 0.4 11 438-448 4-14 (28)
3 3ukx_C Bimax2 peptide; arm rep 13.3 54 0.0018 23.3 0.6 14 407-420 4-17 (28)
4 1ew4_A CYAY protein; friedreic 13.0 21 0.00073 32.4 -1.9 21 4-24 47-67 (106)
5 3t3l_A Frataxin, mitochondrial 10.3 31 0.0011 32.5 -1.8 20 4-23 60-79 (129)
6 3oeq_A Frataxin homolog, mitoc 9.2 41 0.0014 31.6 -1.5 19 4-22 66-84 (123)
7 4h62_V Mediator of RNA polymer 9.1 1.1E+02 0.0037 22.2 1.0 23 62-84 4-26 (31)
8 3b02_A Transcriptional regulat 7.2 4.6E+02 0.016 23.9 4.7 71 708-785 113-189 (195)
9 1sfu_A 34L protein; protein/Z- 6.6 6.6E+02 0.023 21.7 5.0 51 710-766 12-64 (75)
10 4ev0_A Transcription regulator 6.6 6.9E+02 0.024 22.7 5.7 72 707-787 142-215 (216)
No 1
>1w1w_E SCC1, sister chromatid cohesion protein 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: a.4.5.57
Probab=99.89 E-value=2.9e-24 Score=200.03 Aligned_cols=83 Identities=24% Similarity=0.330 Sum_probs=64.5
Q ss_pred ccccccCCCcHHHHHHHHHHHHHhccccccccccccchhhhhc--------cchHHHHHHHHHHHHhhccCCceeecccC
Q 003912 696 VDRQESYGFSARTRMVAKYLHRRFLCHKERREDEAIKLLPLLE--------GRTVKETARIFYEILVLQTKGIVNVKQDD 767 (787)
Q Consensus 696 ~~~~~~~~wS~rTr~vA~~L~~~f~~~~~~~~~~~vsl~~lL~--------g~TRKeAAr~FfE~LVLkT~g~IdV~Q~e 767 (787)
....++.+||+||++||++||..|... ++++|++||+ |+|||+|||+|||+|||||+|||+|+|++
T Consensus 30 v~~~~~~~~Sk~T~~v~~~Lr~~f~~~------~~vsfs~LL~~~~~~~~~~~tRkeAAr~FFElLVLaT~d~I~VeQ~e 103 (121)
T 1w1w_E 30 VRPTPGEVASKAIVQMAKILRKELSEE------KEVIFTDVLKSQANTEPENITKREASRGFFDILSLATEGCIGLSQTE 103 (121)
T ss_dssp ----------CHHHHHHHHHHHHTTSC------SCEEHHHHHHTTC--------CHHHHHHHHHHHHHHHHTSEEEEECS
T ss_pred eeeccCCcccHHHHHHHHHHHHHhCCC------CCccHHHHHhhccccccCCCCHHHHHHHHHHHHHHccCCeeEEecCC
Confidence 444567799999999999999999884 7899999985 89999999999999999999999999999
Q ss_pred CCcCeEEecCccHhhhh
Q 003912 768 AYGDILVVKAPWWDQSC 784 (787)
Q Consensus 768 pYgDI~I~~~p~L~~~~ 784 (787)
|||||.|+++|+|-..|
T Consensus 104 pyGdI~I~~~p~L~~~f 120 (121)
T 1w1w_E 104 AFGNIKIDAKPALFERF 120 (121)
T ss_dssp TTCCEEEEECGGGC---
T ss_pred CCCceEEeeCchhhhhc
Confidence 99999999999985443
No 2
>2vda_B Maltoporin; sugar transport, protein transport, protein targeting, transmembrane, outer membrane, signal peptide; NMR {Escherichia coli}
Probab=36.65 E-value=8.8 Score=27.25 Aligned_cols=11 Identities=45% Similarity=0.724 Sum_probs=9.2
Q ss_pred hhhccccCCch
Q 003912 438 LVSKRRKVPRT 448 (787)
Q Consensus 438 Lv~KRRk~P~T 448 (787)
.+|||||+|-.
T Consensus 4 tlrkrrklpla 14 (28)
T 2vda_B 4 TLRKRRKLPLA 14 (28)
T ss_dssp CCCCCCCCTHH
T ss_pred EeeccccCchH
Confidence 47999999974
No 3
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=13.35 E-value=54 Score=23.26 Aligned_cols=14 Identities=50% Similarity=0.529 Sum_probs=8.5
Q ss_pred hhhhcccccccccc
Q 003912 407 ARISRKRKCCFDDV 420 (787)
Q Consensus 407 ~r~~RKRk~~fD~~ 420 (787)
+|+.||||.-||+.
T Consensus 4 rrrrrkrkrewddd 17 (28)
T 3ukx_C 4 RRRRRKRKREWDDD 17 (28)
T ss_dssp --CCCCCCCCCCCS
T ss_pred hHHHHHhhcccccC
Confidence 45677777778763
No 4
>1ew4_A CYAY protein; friedreich ataxia, frataxin family, iron homeostasis, unknown function; 1.40A {Escherichia coli} SCOP: d.82.2.1 PDB: 2eff_A 2p1x_A 1soy_A
Probab=13.01 E-value=21 Score=32.40 Aligned_cols=21 Identities=29% Similarity=0.594 Sum_probs=18.0
Q ss_pred cchhhccCCchhhhHHhhhcC
Q 003912 4 SRSLLSRKGPLGAIWVAAYCF 24 (787)
Q Consensus 4 S~~LLskkGpLa~IWLAAt~~ 24 (787)
++.|+.|..|+-+|||||-.+
T Consensus 47 ~~~VINkQ~P~~QIWlaSp~s 67 (106)
T 1ew4_A 47 SKIIINRQEPLHQVWLATKQG 67 (106)
T ss_dssp CEEEEEEETTTTEEEEECSSC
T ss_pred CEEEEeCCchhhhheEecCCC
Confidence 467888999999999998765
No 5
>3t3l_A Frataxin, mitochondrial; Fe-S cluster biosynthesis, human mitochondria, oxidoreductas; 1.15A {Homo sapiens} SCOP: d.82.2.1 PDB: 3s4m_A 3t3k_A 3t3j_A 3s5f_A 3t3x_A 3t3t_A 3s5e_A 3s5d_A 1ekg_A 1ly7_A
Probab=10.29 E-value=31 Score=32.48 Aligned_cols=20 Identities=20% Similarity=0.534 Sum_probs=17.6
Q ss_pred cchhhccCCchhhhHHhhhc
Q 003912 4 SRSLLSRKGPLGAIWVAAYC 23 (787)
Q Consensus 4 S~~LLskkGpLa~IWLAAt~ 23 (787)
++.|+.|..|+-+||||+-.
T Consensus 60 g~~VINkQ~P~~QIWLASp~ 79 (129)
T 3t3l_A 60 GTYVINKQTPNKAIWLSSPS 79 (129)
T ss_dssp CEEEEEEETTTTEEEEECSS
T ss_pred CEEEEeCCchhhHhheeCCC
Confidence 56788999999999999974
No 6
>3oeq_A Frataxin homolog, mitochondrial; alpha/beta sandwich, metallochaperone, iron-storage, transpo protein; 2.96A {Saccharomyces cerevisiae} SCOP: d.82.2.1 PDB: 2fql_A 3oer_A 2ga5_A
Probab=9.16 E-value=41 Score=31.62 Aligned_cols=19 Identities=21% Similarity=0.529 Sum_probs=16.8
Q ss_pred cchhhccCCchhhhHHhhh
Q 003912 4 SRSLLSRKGPLGAIWVAAY 22 (787)
Q Consensus 4 S~~LLskkGpLa~IWLAAt 22 (787)
++.++.|..|+-+||||+-
T Consensus 66 ~~~VINkQ~P~~QIWlaSp 84 (123)
T 3oeq_A 66 GTYVINKQPPNKQIWLASP 84 (123)
T ss_dssp CCEEEECCCSSSCCEEEET
T ss_pred CEEEEeCCChhhHHheecC
Confidence 5678889999999999986
No 7
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=9.12 E-value=1.1e+02 Score=22.16 Aligned_cols=23 Identities=35% Similarity=0.674 Sum_probs=15.2
Q ss_pred cceEEEEecchhHHHhhHHHHHH
Q 003912 62 LGLVRIYSKKVEYLFDDCNDAVV 84 (787)
Q Consensus 62 lGVVRIYsrKv~YLl~Dcn~al~ 84 (787)
-||.|.-.+|.+-|++.|-+.+.
T Consensus 4 sgvtrfdekqieelldncietfv 26 (31)
T 4h62_V 4 SGVTRFDEKQIEELLDNCIETFV 26 (31)
T ss_dssp ------CHHHHHHHHHHHHHHHH
T ss_pred CccccccHHHHHHHHHHHHHHHH
Confidence 48999999999999999988765
No 8
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=7.23 E-value=4.6e+02 Score=23.87 Aligned_cols=71 Identities=11% Similarity=0.247 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhcccccccc----ccccchhhhhc--cchHHHHHHHHHHHHhhccCCceeecccCCCcCeEEecCccHh
Q 003912 708 TRMVAKYLHRRFLCHKERRE----DEAIKLLPLLE--GRTVKETARIFYEILVLQTKGIVNVKQDDAYGDILVVKAPWWD 781 (787)
Q Consensus 708 Tr~vA~~L~~~f~~~~~~~~----~~~vsl~~lL~--g~TRKeAAr~FfE~LVLkT~g~IdV~Q~epYgDI~I~~~p~L~ 781 (787)
...+|.+|............ .-.++-.+|.. |.||..-+|.+=+ |+..|+|.+. +|.|.|.-..+|.
T Consensus 113 ~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~---L~~~g~I~~~----~~~i~i~d~~~L~ 185 (195)
T 3b02_A 113 RARIARYLLFLADTPLSARDRQGIYVTVSHEEIADATASIRESVSKVLAD---LRREGLIATA----YRRVYLLDLAALE 185 (195)
T ss_dssp HHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHTTTSCHHHHHHHHHH---HHHHTSEEEE----TTEEEECCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCCeeeccCCHHHHHHHhCCCHHHHHHHHHH---HHHCCCEEec----CCEEEEeCHHHHH
Confidence 45677777765433321110 11244455553 9999999998765 7999999986 4779998888887
Q ss_pred hhhc
Q 003912 782 QSCG 785 (787)
Q Consensus 782 ~~~~ 785 (787)
+.+.
T Consensus 186 ~~~~ 189 (195)
T 3b02_A 186 REAG 189 (195)
T ss_dssp HHHC
T ss_pred HHhc
Confidence 6553
No 9
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=6.64 E-value=6.6e+02 Score=21.70 Aligned_cols=51 Identities=14% Similarity=0.235 Sum_probs=38.2
Q ss_pred HHHHHHHHHhccccccccccccchhhhhc--cchHHHHHHHHHHHHhhccCCceeeccc
Q 003912 710 MVAKYLHRRFLCHKERREDEAIKLLPLLE--GRTVKETARIFYEILVLQTKGIVNVKQD 766 (787)
Q Consensus 710 ~vA~~L~~~f~~~~~~~~~~~vsl~~lL~--g~TRKeAAr~FfE~LVLkT~g~IdV~Q~ 766 (787)
++.+.+++.+...+ +.+..++.+|.+ |++|+++-|.-|. |...|||.+.=.
T Consensus 12 ~~~~~v~~~i~~L~---~~~~~Ta~~IAkkLg~sK~~vNr~LY~---L~kkG~V~~~~~ 64 (75)
T 1sfu_A 12 EIFSLVKKEVLSLN---TNDYTTAISLSNRLKINKKKINQQLYK---LQKEDTVKMVPS 64 (75)
T ss_dssp HHHHHHHHHHHTSC---TTCEECHHHHHHHTTCCHHHHHHHHHH---HHHTTSEEEECC
T ss_pred HHHHHHHHHHHhCC---CCcchHHHHHHHHHCCCHHHHHHHHHH---HHHCCCEecCCC
Confidence 66777777666552 234578888887 9999999998885 668999987643
No 10
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=6.61 E-value=6.9e+02 Score=22.70 Aligned_cols=72 Identities=19% Similarity=0.171 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhccccccccccccchhhhhc--cchHHHHHHHHHHHHhhccCCceeecccCCCcCeEEecCccHhhhh
Q 003912 707 RTRMVAKYLHRRFLCHKERREDEAIKLLPLLE--GRTVKETARIFYEILVLQTKGIVNVKQDDAYGDILVVKAPWWDQSC 784 (787)
Q Consensus 707 rTr~vA~~L~~~f~~~~~~~~~~~vsl~~lL~--g~TRKeAAr~FfE~LVLkT~g~IdV~Q~epYgDI~I~~~p~L~~~~ 784 (787)
....+|.+|.....+. ..-.-.++-.+|.. |.||..-+|.+ =-|+..|+|+++ +|.|.|.-..+|.+.+
T Consensus 142 ~~~Rl~~~L~~~~~~~--~~~~~~~t~~~lA~~lg~sr~tvsR~l---~~l~~~g~I~~~----~~~i~i~d~~~L~~~a 212 (216)
T 4ev0_A 142 ARNRVAYALLKLLRQG--LGPLFQIRHHELAALAGTSRETVSRVL---HALAEEGVVRLG----PGTVEVREAALLEEIA 212 (216)
T ss_dssp HHHHHHHHHHHHHHTT--CCSEEECCHHHHHHHHTSCHHHHHHHH---HHHHHTTSEEEE----TTEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcC--CccCCCCCHHHHHHHhCCCHHHHHHHH---HHHHHCCCEEec----CCEEEEeCHHHHHHHh
Confidence 3455777776544211 11112355555554 99999999975 468999999975 4889999999998876
Q ss_pred ccC
Q 003912 785 GAL 787 (787)
Q Consensus 785 ~~~ 787 (787)
..|
T Consensus 213 ~~l 215 (216)
T 4ev0_A 213 FGL 215 (216)
T ss_dssp TTC
T ss_pred hcc
Confidence 644
Done!