BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003913
(787 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9XIL5|PP154_ARATH Pentatricopeptide repeat-containing protein At2g15820
OS=Arabidopsis thaliana GN=At2g15820 PE=2 SV=3
Length = 849
Score = 919 bits (2375), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/776 (59%), Positives = 597/776 (76%), Gaps = 37/776 (4%)
Query: 22 FFPHVTTVRTPRSYHFLSAPLSSATSQSTFVEQLAGEKDSSQEEKWDMFKNSDAESGSVD 81
FF H +T RTP L S+A TFVE L G +S + +E+
Sbjct: 91 FFSHSST-RTPP----LFTANSTAQRSGTFVEHLTGITESEE---------GISEANGFG 136
Query: 82 FDVGTAGSEMRHLG----EPVVEVIELEELPEQWRRAKLAWLCKELPSHKGGTLVRILNA 137
DV +A +++R++ E EV ELEELPE+WRR+KLAWLCKE+P+HK TLVR+LNA
Sbjct: 137 -DVESARNDIRNVATRRIETEFEVRELEELPEEWRRSKLAWLCKEVPTHKAVTLVRLLNA 195
Query: 138 QKKWLRQEDGTYLAVHCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFA 197
QKKW+RQED TY++VHCMRIRENETGFRVY WM QQ+WYRFDF L TKLA+Y+GKERKF
Sbjct: 196 QKKWVRQEDATYISVHCMRIRENETGFRVYRWMTQQNWYRFDFGLTTKLAEYLGKERKFT 255
Query: 198 KCRDIFDDIINQGRVPSEMTFHILIVAYLSA-PVQGCLDEACSIYNRMIQLGGYQPRPSL 256
KCR++FDD++NQGRVPSE TFHIL+VAYLS+ V+GCL+EACS+YNRMIQLGGY+PR SL
Sbjct: 256 KCREVFDDVLNQGRVPSESTFHILVVAYLSSLSVEGCLEEACSVYNRMIQLGGYKPRLSL 315
Query: 257 HNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERI 316
HNSLFRALVSK GG+ L+QAEFIFHN++T+GLE+QKDIYSGLIWLHS QD +D RI
Sbjct: 316 HNSLFRALVSKQGGILNDQLKQAEFIFHNVVTTGLEVQKDIYSGLIWLHSCQDEVDIGRI 375
Query: 317 SLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEA 376
+ L++EM++AGF+E KEV++S+LR AKEG VE+ E+TWL LL+ D GIP+ AFVYK+EA
Sbjct: 376 NSLREEMKKAGFQESKEVVVSLLRAYAKEGGVEEVERTWLELLDLDCGIPSQAFVYKIEA 435
Query: 377 YAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPL 436
Y+K+G+F K++EIFREM++ +G A++ YHKIIE+LCK ++ EL E+LMKEF E+G KPL
Sbjct: 436 YSKVGDFAKAMEIFREMEKHIGGATMSGYHKIIEVLCKVQQVELVETLMKEFEESGKKPL 495
Query: 437 MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNH 496
+PS+I + MY +LG+H++L +AF +CLEKC+P++ IY IYL+SL GN+EKA ++FN
Sbjct: 496 LPSFIEIAKMYFDLGLHEKLEMAFVQCLEKCQPSQPIYNIYLDSLTKIGNLEKAGDVFNE 555
Query: 497 MHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNR 556
M ++ TI V+ RSCN +L YL G V+AE+IYDLM +KKYEIE MEKLDY+LSL +
Sbjct: 556 MKNNGTINVSARSCNSLLKGYLDCGKQVQAERIYDLMRMKKYEIEPPLMEKLDYILSLKK 615
Query: 557 KEVKK-PVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIRFQFNENSRMHSVLRRYLY 615
KEVKK P S+ LS +QRE L+GLLLGGL IESD+++K HMI+F+F ENS+ H VL++ ++
Sbjct: 616 KEVKKRPFSMKLSKDQREVLVGLLLGGLQIESDKEKKSHMIKFEFRENSQAHLVLKQNIH 675
Query: 616 DQYHEWLHPSFKVSDGNDD-IPYKYSTISHPYFCFYADKFWPKGRLVIPKLIHRWLTPRA 674
DQ+ EWLHP +S+ +D IP+++ ++ H YF FYA+ +WPKG+ IPKLIHRWL+P +
Sbjct: 676 DQFREWLHP---LSNFQEDIIPFEFYSVPHSYFGFYAEHYWPKGQPEIPKLIHRWLSPHS 732
Query: 675 LAYWFMYGGHRTSVGDILLKLKVSSEGIALVFKTLKARSLDCRVKKKGRVFWIGFLGSNS 734
LAYW+MY G +TS GDI+L+LK S EG+ V K L+A+S++CRVKKKG+VFWIG G+NS
Sbjct: 733 LAYWYMYSGVKTSSGDIILRLKGSLEGVEKVVKALQAKSMECRVKKKGKVFWIGLQGTNS 792
Query: 735 TLFWKLIEPYVLDELKEDLLNEGSE----YRKLDTQNINFDCGSDSDEKASDYSDD 786
LFWKLIEP+VL+ LKE L SE ++ + Q+INF SD+SDD
Sbjct: 793 ALFWKLIEPHVLENLKEH-LKPASESLDNVKEAEEQSINFKSN-------SDHSDD 840
>sp|Q5G1S8|PP241_ARATH Pentatricopeptide repeat-containing protein At3g18110, chloroplastic
OS=Arabidopsis thaliana GN=EMB1270 PE=2 SV=2
Length = 1440
Score = 82.4 bits (202), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 84/370 (22%), Positives = 172/370 (46%), Gaps = 23/370 (6%)
Query: 178 FDFALA---TKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCL 234
F FA + T + + GK++ + K + ++ GR P T++ L+ AY GC
Sbjct: 747 FHFACSPMYTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQC---GCY 803
Query: 235 DEACSIYNRMIQLGGYQPRPSLH--NSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLE 292
+ A +I+N M++ G P P++ N L AL G L + Y+ + L G +
Sbjct: 804 ERARAIFNTMMRDG---PSPTVESINILLHALCVD-GRLEELYV-----VVEELQDMGFK 854
Query: 293 IQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAE 352
I K S L+ L ++ + + + M+ AG+ + ++ + K V DAE
Sbjct: 855 ISKS--SILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAE 912
Query: 353 KTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELL 412
+ E++ + + ++ Y I ++ K++++++ ++E Y+ +I +
Sbjct: 913 IMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMY 972
Query: 413 CKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEK-CRPNR 471
C+ E LM++ G+ P + +Y +L + + ++ F E L K + +R
Sbjct: 973 CRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDR 1032
Query: 472 TIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYD 531
+ Y ++ +++G+ KAE++ M + I + ++++ +Y SSG+ +AEK+
Sbjct: 1033 SFYHTMMKISRDSGSDSKAEKLL-QMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKV-- 1089
Query: 532 LMCLKKYEIE 541
L LK E+E
Sbjct: 1090 LSNLKDTEVE 1099
Score = 66.6 bits (161), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 90/401 (22%), Positives = 163/401 (40%), Gaps = 41/401 (10%)
Query: 109 EQWRRA--KLAWL-CKELPSHKGGTLVRILNAQKKWLRQEDGTYLAVHCMRIRENETGFR 165
E W+RA WL + S + IL +W ++ LAV E G R
Sbjct: 169 ESWQRALEVFEWLNLRHWHSPNARMVAAILGVLGRWNQES----LAVEIFTRAEPTVGDR 224
Query: 166 V--YEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIV 223
V Y MM + + KF+K +++ D + +G VP ++F+ LI
Sbjct: 225 VQVYNAMMGVY----------------SRSGKFSKAQELVDAMRQRGCVPDLISFNTLIN 268
Query: 224 AYLSAPVQGCLDEACSI-YNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFI 282
A L + G L ++ M++ G +P +N+L A L A +
Sbjct: 269 ARLKS---GGLTPNLAVELLDMVRNSGLRPDAITYNTLLSACSRDSN------LDGAVKV 319
Query: 283 FHNLLTSGLEIQKDIYSGLIWLHSYQD-NIDKERISLLKKEMQQAGFEEGKEVLLSVLRV 341
F ++ + Y+ +I ++ + ER+ + E++ GF S+L
Sbjct: 320 FEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFM---ELELKGFFPDAVTYNSLLYA 376
Query: 342 CAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLG-SA 400
A+E + E ++ + ++ + G + + Y K G+ +L+++++M+ G +
Sbjct: 377 FARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNP 436
Query: 401 SVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAF 460
Y +I+ L KA T +LM E ++ G+KP + +Y L Y G + F
Sbjct: 437 DAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTF 496
Query: 461 SECLEK-CRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSD 500
S L +P+ Y + L+ L KA ++ M SD
Sbjct: 497 SCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWGLYRDMISD 537
Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 102/227 (44%), Gaps = 16/227 (7%)
Query: 171 MQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYL--SA 228
M++ ++ + A+ + + K ++ I G P E T++ LI+ Y
Sbjct: 918 MEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRR 977
Query: 229 PVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLT 288
P +G L + +M L G P+ + SL A G K L+QAE +F LL+
Sbjct: 978 PEEGYL-----LMQQMRNL-GLDPKLDTYKSLISAF-----GKQK-CLEQAEQLFEELLS 1025
Query: 289 SGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDV 348
GL++ + Y ++ + +D+ + L + M+ AG E + ++ + G+
Sbjct: 1026 KGLKLDRSFYHTMMKIS--RDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNP 1083
Query: 349 EDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQE 395
++AEK L +++ + T + ++AY + ++ +E EM++
Sbjct: 1084 QEAEKVLSNLKDTEVELTTLPYSSVIDAYLRSKDYNSGIERLLEMKK 1130
>sp|O04491|PPR26_ARATH Putative pentatricopeptide repeat-containing protein At1g09680
OS=Arabidopsis thaliana GN=At1g09680 PE=3 SV=1
Length = 607
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 121/275 (44%), Gaps = 13/275 (4%)
Query: 161 ETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHI 220
+ GFR+ + M++ R D + L + + KE K +FD++ +G +P+++ F
Sbjct: 292 DEGFRL-KHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTT 350
Query: 221 LIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAE 280
LI + G +D Y +M+ G QP L+N+L K G L A
Sbjct: 351 LIHGHSR---NGEIDLMKESYQKMLS-KGLQPDIVLYNTLVNGFC-KNGDLV-----AAR 400
Query: 281 FIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLR 340
I ++ GL K Y+ LI + D E ++KEM Q G E + +++
Sbjct: 401 NIVDGMIRRGLRPDKITYTTLI--DGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVC 458
Query: 341 VCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSA 400
KEG V DAE+ +L + + M+A+ K G+ ++ +EMQ
Sbjct: 459 GMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVP 518
Query: 401 SVPAYHKIIELLCKAEETELTESLMKEFVETGMKP 435
SV Y+ ++ LCK + + + L+ + G+ P
Sbjct: 519 SVVTYNVLLNGLCKLGQMKNADMLLDAMLNIGVVP 553
Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 62/313 (19%), Positives = 123/313 (39%), Gaps = 13/313 (4%)
Query: 186 LADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMI 245
L + KE + + +FD+I + P+ ++F+ LI Y G LDE + ++M
Sbjct: 246 LMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKV---GNLDEGFRLKHQM- 301
Query: 246 QLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLH 305
+ +P +++L AL + + A +F + GL I++ LI H
Sbjct: 302 EKSRTRPDVFTYSALINALCKE------NKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGH 355
Query: 306 SYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGI 365
S ID + S K M G + + +++ K GD+ A ++
Sbjct: 356 SRNGEIDLMKESYQK--MLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRP 413
Query: 366 PTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLM 425
+ ++ + + G+ +LEI +EM + + ++ +CK E +
Sbjct: 414 DKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERAL 473
Query: 426 KEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCR-PNRTIYGIYLESLKNA 484
+E + G+KP +Y + + + G E P+ Y + L L
Sbjct: 474 REMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKL 533
Query: 485 GNIEKAEEIFNHM 497
G ++ A+ + + M
Sbjct: 534 GQMKNADMLLDAM 546
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 73/177 (41%), Gaps = 1/177 (0%)
Query: 322 EMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIG 381
E+ AGF V ++ KEG++ DA+K + + + +F + Y K+G
Sbjct: 230 EILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVG 289
Query: 382 EFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYI 441
+ + +M++ V Y +I LCK + + L E + G+ P +
Sbjct: 290 NLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFT 349
Query: 442 NLTNMYLNLGMHDRLHLAFSECLEK-CRPNRTIYGIYLESLKNAGNIEKAEEIFNHM 497
L + + G D + ++ + L K +P+ +Y + G++ A I + M
Sbjct: 350 TLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGM 406
Score = 38.9 bits (89), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 83/389 (21%), Positives = 139/389 (35%), Gaps = 64/389 (16%)
Query: 368 PAFVYKMEAYAKIGEFMKSLEIFREMQ-------ERLGSASVPA-YHKIIELLCKAEETE 419
P F + +E Y + F+ E+F E Q R G S + + ++E+
Sbjct: 112 PGFRFTVETYFVLARFLAVHEMFTEAQSLIELVVSRKGKNSASSVFISLVEMRVTPMCGF 171
Query: 420 LTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSEC------LEKCRPNRTI 473
L ++LM + + G P L+ + R + C + K P TI
Sbjct: 172 LVDALMITYTDLGFIPDAIQCFRLSRKH-------RFDVPIRGCGNLLDRMMKLNPTGTI 224
Query: 474 YGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLM 533
+G Y+E L D +N NI+++ + G+ A+K++D +
Sbjct: 225 WGFYMEIL------------------DAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEI 266
Query: 534 CLKKYEIESAWMEKL--DYVLSLNRKEVKKPVSLNLSSEQRENLI--GLLLGGLCIES-- 587
+ + L Y N E + S R ++ L+ LC E+
Sbjct: 267 TKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKM 326
Query: 588 -------DEKRKRHMIRFQFNENSRMHSVLRRYLYDQYHEWLHPSFKVSDGNDDIPYKYS 640
DE KR +I + +H R D E +S G Y+
Sbjct: 327 DGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQK--MLSKGLQPDIVLYN 384
Query: 641 TISHPYFCFYADKFWPKGRLVIPKLIHRWLTPRALAYWFMYGGHRTSVGDILLKLKVSSE 700
T+ + FC D R ++ +I R L P + Y + G GD+ L++ E
Sbjct: 385 TLVNG-FCKNGD--LVAARNIVDGMIRRGLRPDKITYTTLIDGF-CRGGDVETALEIRKE 440
Query: 701 ----GIALVFKTLKARSLDCRVKKKGRVF 725
GI L + +L C + K+GRV
Sbjct: 441 MDQNGIEL--DRVGFSALVCGMCKEGRVI 467
>sp|Q0WPZ6|PP158_ARATH Pentatricopeptide repeat-containing protein At2g17140
OS=Arabidopsis thaliana GN=At2g17140 PE=2 SV=1
Length = 874
Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 76/337 (22%), Positives = 151/337 (44%), Gaps = 14/337 (4%)
Query: 200 RDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNS 259
R++FD++ +G P+E TF IL+ Y A G D+ + N M G P ++N+
Sbjct: 167 RELFDEMPEKGCKPNEFTFGILVRGYCKA---GLTDKGLELLNAMESFG-VLPNKVIYNT 222
Query: 260 LFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNI-DKERISL 318
+ + + +E + + GL ++ I + + D RI
Sbjct: 223 IVSSFCREGRN------DDSEKMVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFS 276
Query: 319 LKKEMQQAGFEEGKEVLLSV-LRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAY 377
+ + G + ++ L+ K G +EDA+ + + E+D+ ++ ++
Sbjct: 277 DMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLASLQSYNIWLQGL 336
Query: 378 AKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLM 437
+ G+F+++ + ++M ++ S+ +Y+ +++ LCK ++++ G+ P
Sbjct: 337 VRHGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDA 396
Query: 438 PSYINLTNMYLNLGMHDRLHLAFSECL-EKCRPNRTIYGIYLESLKNAGNIEKAEEIFNH 496
+Y L + Y ++G D E + C PN I L SL G I +AEE+
Sbjct: 397 VTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEELLRK 456
Query: 497 MHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLM 533
M+ ++ G++T +CNII+ SG+ KA +I M
Sbjct: 457 MN-EKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGM 492
Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 68/162 (41%), Gaps = 8/162 (4%)
Query: 377 YAKIGEFMKSLEIFREMQERL--GSASVPAYHKIIELLCKAEETELTESLMKEFVETGMK 434
+AK K+ F+ ++ R SV Y+ ++E K E L K+ V G+
Sbjct: 85 FAKSNHIDKAFPQFQLVRSRFPENKPSVYLYNLLLESCIKERRVEFVSWLYKDMVLCGIA 144
Query: 435 PLMPSYINLTNMYLNLGMHDRLHLAFSECLEK-CRPNRTIYGIYLESLKNAGNIEKAEEI 493
P ++ L + D F E EK C+PN +GI + AG +K E+
Sbjct: 145 PQTYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLEL 204
Query: 494 FNHMHSDQTIGV--NTRSCNIILSAYLSSGDFVKAEKIYDLM 533
N M S GV N N I+S++ G +EK+ + M
Sbjct: 205 LNAMES---FGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKM 243
Score = 42.7 bits (99), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 48/106 (45%)
Query: 389 IFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYL 448
+ EM+E+ S ++ Y+ I+ LC+ E+ E +L+ E ++ + P + S+ L +
Sbjct: 616 LMDEMKEKGISPNICTYNTAIQYLCEGEKVEDATNLLDEMMQKNIAPNVFSFKYLIEAFC 675
Query: 449 NLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIF 494
+ D F + C +Y + L AG + KA E+
Sbjct: 676 KVPDFDMAQEVFETAVSICGQKEGLYSLMFNELLAAGQLLKATELL 721
Score = 40.4 bits (93), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 72/163 (44%), Gaps = 10/163 (6%)
Query: 374 MEAYAKIGEFMKSLEIFREMQ-ERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETG 432
+ K G F ++ +F EM E+L SV AY+ I CK + ++K+ + G
Sbjct: 531 LNGLCKAGRFAEAKNLFAEMMGEKLQPDSV-AYNIFIHHFCKQGKISSAFRVLKDMEKKG 589
Query: 433 MKPLMPSYINLTNMYLNLGMHDR---LHLAFSECLEK-CRPNRTIYGIYLESLKNAGNIE 488
+ +Y ++ L LG+ ++ +H E EK PN Y ++ L +E
Sbjct: 590 CHKSLETY---NSLILGLGIKNQIFEIHGLMDEMKEKGISPNICTYNTAIQYLCEGEKVE 646
Query: 489 KAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYD 531
A + + M + I N S ++ A+ DF A+++++
Sbjct: 647 DATNLLDEMMQ-KNIAPNVFSFKYLIEAFCKVPDFDMAQEVFE 688
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 92/402 (22%), Positives = 165/402 (41%), Gaps = 17/402 (4%)
Query: 171 MQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPV 230
M+ D + L DY+ K + + R IFD + +G P T+ L+ Y
Sbjct: 292 MRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGY---AT 348
Query: 231 QGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSG 290
+G L E + + M++ G P + +F L+ K + QA +F + G
Sbjct: 349 KGALVEMHGLLDLMVR-NGIHP----DHYVFSILICAYAKQGK--VDQAMLVFSKMRQQG 401
Query: 291 LEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVED 350
L Y +I + + E L ++M G G V S++ E
Sbjct: 402 LNPNAVTYGAVIGILCKSGRV--EDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWER 459
Query: 351 AEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLG-SASVPAYHKII 409
AE+ L +L+ + T F ++++ K G ++S ++F E+ R+G +V Y+ +I
Sbjct: 460 AEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLF-ELMVRIGVKPNVITYNTLI 518
Query: 410 ELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLG-MHDRLHLAFSECLEKCR 468
C A + + L+ V G+KP +Y L N Y + M D L L
Sbjct: 519 NGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVS 578
Query: 469 PNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEK 528
P+ Y I L+ L A+E++ + T + + NIIL + A +
Sbjct: 579 PDIITYNIILQGLFQTRRTAAAKELYVRITESGT-QIELSTYNIILHGLCKNKLTDDALQ 637
Query: 529 IYDLMCLKKYEIES-AWMEKLDYVLSLNRKEVKKPVSLNLSS 569
++ +CL ++E+ + +D +L + R + K + + SS
Sbjct: 638 MFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSS 679
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 70/344 (20%), Positives = 141/344 (40%), Gaps = 26/344 (7%)
Query: 200 RDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHN- 258
R +FD+++ +GR S + L+ + A S YNRM + G + P L
Sbjct: 35 RHVFDELLRRGRGASIYGLN----RALADVARDSPAAAVSRYNRMARAGADEVTPDLCTY 90
Query: 259 SLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISL 318
+ + G L + N++ G + ++ L+ D + + +
Sbjct: 91 GILIGCCCRAGRLDLGFAA-----LGNVIKKGFRVDAIAFTPLLK-GLCADKRTSDAMDI 144
Query: 319 LKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTP----AFVYKM 374
+ + M + G +L+ E ++A + L ++ D G +P ++ +
Sbjct: 145 VLRRMTELGCIPNVFSYNILLKGLCDENRSQEALE-LLHMMADDRGGGSPPDVVSYTTVI 203
Query: 375 EAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMK 434
+ K G+ K+ + EM +R V Y+ II LCKA+ + ++ V+ G+
Sbjct: 204 NGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVM 263
Query: 435 PLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCR-----PNRTIYGIYLESLKNAGNIEK 489
P +Y ++ + Y + G + + F L+K R P+ Y + ++ L G +
Sbjct: 264 PDCMTYNSILHGYCSSG-QPKEAIGF---LKKMRSDGVEPDVVTYSLLMDYLCKNGRCME 319
Query: 490 AEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLM 533
A +IF+ M + + + + +L Y + G V+ + DLM
Sbjct: 320 ARKIFDSM-TKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLM 362
>sp|P0C043|PP318_ARATH Putative pentatricopeptide repeat-containing protein At4g17915
OS=Arabidopsis thaliana GN=At4g17915 PE=3 SV=1
Length = 463
Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 103/464 (22%), Positives = 179/464 (38%), Gaps = 67/464 (14%)
Query: 181 ALATKL----ADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDE 236
L+T+L D + K RK K + D I G P +T++ LI Y ++E
Sbjct: 10 GLSTRLLNICVDSLCKFRKLEKAESLIIDGIRLGVDPDVVTYNTLISGYCRFVG---IEE 66
Query: 237 ACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKD 296
A ++ RM + G +P + +NSL G + L ++F +L G+
Sbjct: 67 AYAVTRRM-RDAGIRPDVATYNSLI------AGAARRLMLDHVLYLFDEMLEWGIYPDLW 119
Query: 297 IYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDA----- 351
Y+ L+ + ++ +E +L K++Q AG G + +L K G +++A
Sbjct: 120 SYNTLMCCY-FKLGKHEEAFRVLYKDLQLAGLNPGPDTYNVLLDALCKCGYIDNALELFK 178
Query: 352 ---------------------------EKTWLRLLESDNGIPTPAFVYK--MEAYAKIGE 382
W+ +G A Y ++ Y K
Sbjct: 179 EMQSRFKPELMTYNILINGLCKSRRVGTAKWMLTELKKSGYTPNAVTYTTILKLYFKTRR 238
Query: 383 FMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYIN 442
+ L++F EM+ + AY ++ L K T+ M+E V G + + SY
Sbjct: 239 IRRGLQLFLEMKREGYTYDGYAYFAVVSALIKTGRTKEAYEYMQELVRKGRRHDIVSYNT 298
Query: 443 LTNMYLNLGMHDRLHLAFSECLEK-CRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ 501
L N+Y G D + E + + + + I + L G +AEE F M +
Sbjct: 299 LLNLYFKDGNLDAVDDLLGEIERRGMKADEYTHTIIVNGLLRTGQTRRAEEHFVSM-GEM 357
Query: 502 TIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKL----------DYV 551
IG+N +CN ++ +G +A + ++ M +K ++ + L +
Sbjct: 358 GIGLNLVTCNCLVDGLCKAGHVDRAMRYFESMEVKDEYTYTSVVHNLCKDMRFVCASKLL 417
Query: 552 LSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHM 595
LS K +K P +S +R L GL + G C K K M
Sbjct: 418 LSCYNKGIKIP-----TSARRAVLSGLRMSG-CYGEARKAKAEM 455
>sp|Q0WMY5|PP365_ARATH Pentatricopeptide repeat-containing protein At5g04810,
chloroplastic OS=Arabidopsis thaliana GN=PPR4 PE=1 SV=1
Length = 952
Score = 71.2 bits (173), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 80/363 (22%), Positives = 154/363 (42%), Gaps = 23/363 (6%)
Query: 177 RFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDE 236
R +F L K + G+ + R+ F+ + +G P+ + LI AY V +DE
Sbjct: 309 RTEFGLMVK---FYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAY---AVGRDMDE 362
Query: 237 ACSIYNRMIQLGGYQPRPSLHNSL--FRALVSKPGGLSKY-YLQQAEFIFHNLLTSGLEI 293
A S +M + G + SL + +V GG SK + + A++ F +
Sbjct: 363 ALSCVRKMKEEG-------IEMSLVTYSVIV---GGFSKAGHAEAADYWFDEAKRIHKTL 412
Query: 294 QKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEK 353
IY +I+ H N+ ER L +EM++ G + + +++ D +
Sbjct: 413 NASIYGKIIYAHCQTCNM--ERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLV 470
Query: 354 TWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLC 413
+ RL E + + Y K+G+ K+LE+ R M+E ++ Y +I
Sbjct: 471 VFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFV 530
Query: 414 KAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE-KCRPNRT 472
K ++ ++ ++ V+ GMKP + Y N+ + + +G DR E + + RP
Sbjct: 531 KLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTR 590
Query: 473 IYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDL 532
+ + +G++ ++ E+F+ M + + N +++ + KA +I D
Sbjct: 591 TFMPIIHGYAKSGDMRRSLEVFDMMRRCGCV-PTVHTFNGLINGLVEKRQMEKAVEILDE 649
Query: 533 MCL 535
M L
Sbjct: 650 MTL 652
Score = 40.4 bits (93), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 59/291 (20%), Positives = 122/291 (41%), Gaps = 20/291 (6%)
Query: 249 GYQPRPSLHNSLFRALVSKPGGLSKYY----LQQAEFIFHNLLTSGLEIQKDIYSGLIWL 304
G+ P + L L +K G +SK + + E + HNL T + I +G + L
Sbjct: 479 GFTPTVVTYGCLIN-LYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMI-----NGFVKL 532
Query: 305 HSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNG 364
+ + + ++M + G + + +++ G+++ A +T + + +
Sbjct: 533 KDWANAF------AVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHR 586
Query: 365 IPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSA-SVPAYHKIIELLCKAEETELTES 423
T F+ + YAK G+ +SLE+F +M R G +V ++ +I L + + E
Sbjct: 587 PTTRTFMPIIHGYAKSGDMRRSLEVF-DMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVE 645
Query: 424 LMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECL-EKCRPNRTIYGIYLESLK 482
++ E G+ +Y + Y ++G + F+ E + Y L++
Sbjct: 646 ILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACC 705
Query: 483 NAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLM 533
+G ++ A + M S + I N+ NI++ + GD +A + M
Sbjct: 706 KSGRMQSALAVTKEM-SARNIPRNSFVYNILIDGWARRGDVWEAADLIQQM 755
>sp|Q9SAD9|PPR40_ARATH Pentatricopeptide repeat-containing protein At1g13040,
mitochondrial OS=Arabidopsis thaliana GN=At1g13040 PE=2
SV=1
Length = 517
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 86/350 (24%), Positives = 147/350 (42%), Gaps = 19/350 (5%)
Query: 188 DYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQL 247
D + +E K F ++ +GR P +++ ILI A G + +A I+N MI+
Sbjct: 122 DLLCRENKVGFAVQTFFCMVQRGREPDVVSYTILINGLFRA---GKVTDAVEIWNAMIRS 178
Query: 248 GGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSY 307
G S N ALV K L E + + ++ +++ +Y+ LI
Sbjct: 179 G-----VSPDNKACAALVVGLCHARKVDLAY-EMVAEEIKSARVKLSTVVYNALISGFCK 232
Query: 308 QDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPT 367
I E+ LK M + G E +L ++ AE ++ S GI
Sbjct: 233 AGRI--EKAEALKSYMSKIGCEPDLVTYNVLLNYYYDNNMLKRAEGVMAEMVRS--GIQL 288
Query: 368 PAFVYK--MEAYAKIGEFMKSLE-IFREMQERLGSASVPAYHKIIELLCKAEETELTESL 424
A+ Y ++ + ++ K + +EM+ R G V +Y +IE C+A T L
Sbjct: 289 DAYSYNQLLKRHCRVSHPDKCYNFMVKEMEPR-GFCDVVSYSTLIETFCRASNTRKAYRL 347
Query: 425 MKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE-KCRPNRTIYGIYLESLKN 483
+E + GM + +Y +L +L G + E P+R Y L+ L
Sbjct: 348 FEEMRQKGMVMNVVTYTSLIKAFLREGNSSVAKKLLDQMTELGLSPDRIFYTTILDHLCK 407
Query: 484 AGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLM 533
+GN++KA +FN M + I + S N ++S SG +A K+++ M
Sbjct: 408 SGNVDKAYGVFNDM-IEHEITPDAISYNSLISGLCRSGRVTEAIKLFEDM 456
>sp|Q8GYP6|PPR49_ARATH Pentatricopeptide repeat-containing protein At1g18900
OS=Arabidopsis thaliana GN=At1g18900 PE=1 SV=1
Length = 860
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/314 (21%), Positives = 129/314 (41%), Gaps = 45/314 (14%)
Query: 160 NETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFH 219
N GF + W+ +Q ++ D T + +G+ ++F + D+++ G P+ +T++
Sbjct: 346 NALGF--FYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYN 403
Query: 220 ILIVAYLSAPV-------------QGC-------------------LDEACSIYNRMIQL 247
LI +Y A GC LD A +Y RM Q
Sbjct: 404 RLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRM-QA 462
Query: 248 GGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSY 307
GG P ++ + L K G +L A +F ++ G Y+ ++ LH+
Sbjct: 463 GGLSPDTFTYSVIINCL-GKAG-----HLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAK 516
Query: 308 QDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPT 367
N + L ++MQ AGFE K V+ V G +E+AE + ++ N IP
Sbjct: 517 ARNY--QNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTE-MQQKNWIPD 573
Query: 368 -PAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMK 426
P + ++ + K G K+ + ++ M +VP + ++ + + L++
Sbjct: 574 EPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQ 633
Query: 427 EFVETGMKPLMPSY 440
+ G++P + +Y
Sbjct: 634 NMLALGLRPSLQTY 647
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 119/257 (46%), Gaps = 12/257 (4%)
Query: 282 IFHNLLTSGLEIQKDIYSGLIWLHSY-QDNIDKERISLLKKEMQQAGFEEGKEVLLSVLR 340
+ ++ G + Y+ LI HSY + N E +++ +MQ+AG + + +++
Sbjct: 386 LLDEMVRDGCQPNTVTYNRLI--HSYGRANYLNEAMNVFN-QMQEAGCKPDRVTYCTLID 442
Query: 341 VCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYK--MEAYAKIGEFMKSLEIFREMQERLG 398
+ AK G ++ A + R+ G+ F Y + K G + ++F EM ++
Sbjct: 443 IHAKAGFLDIAMDMYQRM--QAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGC 500
Query: 399 SASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHL 458
+ ++ Y+ +++L KA + L ++ G +P +Y + + + G +
Sbjct: 501 TPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEA 560
Query: 459 AFSECLEKC-RPNRTIYGIYLESLKNAGNIEKAEEIFNHM-HSDQTIGVNTRSCNIILSA 516
F+E +K P+ +YG+ ++ AGN+EKA + + M H+ + N +CN +LS
Sbjct: 561 VFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAG--LRPNVPTCNSLLST 618
Query: 517 YLSSGDFVKAEKIYDLM 533
+L +A ++ M
Sbjct: 619 FLRVNKIAEAYELLQNM 635
>sp|O49436|PP327_ARATH Pentatricopeptide repeat-containing protein At4g20090
OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1
Length = 660
Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 76/337 (22%), Positives = 151/337 (44%), Gaps = 21/337 (6%)
Query: 186 LADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMI 245
L D + K+ + + D++ +G VP+E+T++ LI ++G LD+A S+ RM+
Sbjct: 263 LIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLC---LKGKLDKAVSLLERMV 319
Query: 246 QLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLH 305
P + +L LV + A + ++ G + + IYS LI
Sbjct: 320 S-SKCIPNDVTYGTLINGLVKQRRA------TDAVRLLSSMEERGYHLNQHIYSVLIS-G 371
Query: 306 SYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGI 365
+++ +E +SL +K M + G + V ++ +EG +A++ R++ S G
Sbjct: 372 LFKEGKAEEAMSLWRK-MAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIAS--GC 428
Query: 366 PTPAFVYK--MEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTES 423
A+ Y M+ + K G +++++++EM + S + Y +I+ LC +
Sbjct: 429 LPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMM 488
Query: 424 LMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECL----EKCRPNRTIYGIYLE 479
+ + + G+KP +Y ++ +G D + E L K +P+ Y I L+
Sbjct: 489 VWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLD 548
Query: 480 SLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSA 516
L +I +A ++ N M D+ + +CN L+
Sbjct: 549 GLCMQKDISRAVDLLNSML-DRGCDPDVITCNTFLNT 584
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/310 (20%), Positives = 136/310 (43%), Gaps = 26/310 (8%)
Query: 234 LDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEI 293
+DEA + + M Q G P P ++N L L K L + + N+ G
Sbjct: 238 IDEAVLLLDEM-QSEGCSPSPVIYNVLIDGLCKKGD------LTRVTKLVDNMFLKGCVP 290
Query: 294 QKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEK 353
+ Y+ LI + +DK +SLL++ M + +++ K+ DA
Sbjct: 291 NEVTYNTLIHGLCLKGKLDKA-VSLLER-MVSSKCIPNDVTYGTLINGLVKQRRATDA-- 346
Query: 354 TWLRLLES--DNGIPTPAFVYK--MEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKII 409
+RLL S + G +Y + K G+ +++ ++R+M E+ ++ Y ++
Sbjct: 347 --VRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLV 404
Query: 410 ELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEK--C 467
+ LC+ + + ++ + +G P +Y +L + G+ + + E ++K C
Sbjct: 405 DGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKE-MDKTGC 463
Query: 468 RPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGV--NTRSCNIILSAYLSSGDFVK 525
N+ Y + ++ L G +++A +++ M TIG+ +T + + I+ G
Sbjct: 464 SRNKFCYSVLIDGLCGVGRVKEAMMVWSKM---LTIGIKPDTVAYSSIIKGLCGIGSMDA 520
Query: 526 AEKIY-DLMC 534
A K+Y +++C
Sbjct: 521 ALKLYHEMLC 530
Score = 41.2 bits (95), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 69/320 (21%), Positives = 127/320 (39%), Gaps = 27/320 (8%)
Query: 318 LLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAY 377
+ K + F+ G L S++ A GD + EK R+ + I +F+ AY
Sbjct: 63 MFKSAPKMGSFKLGDSTLSSMIESYANSGDFDSVEKLLSRIRLENRVIIERSFIVVFRAY 122
Query: 378 AKIGEFMKSLEIFREMQERLGSA-SVPAYHKIIELLCKA----EETELTESLMKEFVETG 432
K K++++F M + SV +++ ++ ++ E + ++ +
Sbjct: 123 GKAHLPDKAVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMN 182
Query: 433 MKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE-KCRPNRTIYGIYLESLKNAGNIEKAE 491
+ P S+ + L DR F E KC P+ Y ++ L I++A
Sbjct: 183 ISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAV 242
Query: 492 EIFNHMHSDQTIGVNTRSC--NIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLD 549
+ + M S+ G + N+++ GD + K+ D M LK L
Sbjct: 243 LLLDEMQSE---GCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLI 299
Query: 550 YVLSLNRKEVKKPVSL---NLSSEQRENLI--GLLLGGLCIESDEKRKRHMIRF------ 598
+ L L K + K VSL +SS+ N + G L+ GL ++R +R
Sbjct: 300 HGLCLKGK-LDKAVSLLERMVSSKCIPNDVTYGTLINGL---VKQRRATDAVRLLSSMEE 355
Query: 599 -QFNENSRMHSVLRRYLYDQ 617
++ N ++SVL L+ +
Sbjct: 356 RGYHLNQHIYSVLISGLFKE 375
>sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990,
mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2
SV=1
Length = 974
Score = 67.8 bits (164), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 80/375 (21%), Positives = 151/375 (40%), Gaps = 24/375 (6%)
Query: 184 TKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNR 243
T L + + K K +IF ++ +G P ++ +LI + G + +A SI++
Sbjct: 596 TVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKL---GNMQKASSIFDE 652
Query: 244 MIQLGGYQPRPSLHNSLFRALVSKPGGLSKY-YLQQAEFIFHNLLTSGLEIQKDIYSGLI 302
M++ G P ++N L GG + +++A+ + + GL Y +I
Sbjct: 653 MVE-EGLTPNVIIYNMLL-------GGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTII 704
Query: 303 WLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESD 362
Y + D L EM+ G V +++ C + DVE A T +
Sbjct: 705 --DGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERA-ITIFGTNKKG 761
Query: 363 NGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQE----RLGSASVPAYHKIIELLCKAEET 418
T F + K G+ E+ + + R G + Y+ +I+ LCK
Sbjct: 762 CASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNL 821
Query: 419 ELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEK-CRPNRTIYGIY 477
E + L + + P + +Y +L N Y +G + F E + P+ +Y +
Sbjct: 822 EAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVI 881
Query: 478 LESLKNAGNIEKA----EEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLM 533
+ + G KA +++F D ++ +C +LS + G+ AEK+ + M
Sbjct: 882 INAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVMENM 941
Query: 534 CLKKYEIESAWMEKL 548
+Y +SA + +L
Sbjct: 942 VRLQYIPDSATVIEL 956
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 74/341 (21%), Positives = 135/341 (39%), Gaps = 34/341 (9%)
Query: 177 RFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDE 236
R + + T L + +F + ++ QG P ++ LI+ A +DE
Sbjct: 449 RPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKR---MDE 505
Query: 237 ACSIYNRMIQLGGYQPRPSLHNSLFRALV--SKPGGLSKYYLQQAEFIFHNLLTSGLEIQ 294
A S M++ G +P + + + S+ KY + E G+
Sbjct: 506 ARSFLVEMVE-NGLKPNAFTYGAFISGYIEASEFASADKYVKEMRE--------CGVLPN 556
Query: 295 KDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKE--VLLSVLRVCAKEGDVEDAE 352
K + +GLI + + + E S + + Q + K VL++ L K V+DAE
Sbjct: 557 KVLCTGLINEYCKKGKV-IEACSAYRSMVDQGILGDAKTYTVLMNGL---FKNDKVDDAE 612
Query: 353 KTWLRLLESDNGIPTPAFVYK--MEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIE 410
+ + + GI F Y + ++K+G K+ IF EM E + +V Y+ ++
Sbjct: 613 EIFREM--RGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLG 670
Query: 411 LLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSEC-LEKCRP 469
C++ E E + L+ E G+ P +Y + + Y G F E L+ P
Sbjct: 671 GFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVP 730
Query: 470 NRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSC 510
+ +Y ++ ++E+A IF G N + C
Sbjct: 731 DSFVYTTLVDGCCRLNDVERAITIF---------GTNKKGC 762
Score = 43.9 bits (102), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 63/326 (19%), Positives = 126/326 (38%), Gaps = 49/326 (15%)
Query: 204 DDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRA 263
+ +I +G VP + T+ +LI L++A S+ M LG SL N +
Sbjct: 266 ESMICKGLVPLKYTYDVLIDGLCKIKR---LEDAKSLLVEMDSLG-----VSLDNHTYSL 317
Query: 264 LVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEM 323
L+ G L A+ + H +++ G+ I+ +Y I + S
Sbjct: 318 LID--GLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMS----------------- 358
Query: 324 QQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEF 383
KEG +E A+ + ++ S A+ +E Y +
Sbjct: 359 --------------------KEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNV 398
Query: 384 MKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINL 443
+ E+ EM++R S Y +++ +C + + + +++KE + +G +P + Y L
Sbjct: 399 RQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTL 458
Query: 444 TNMYL-NLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQT 502
+L N D + + + P+ Y + L A +++A M +
Sbjct: 459 IKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEM-VENG 517
Query: 503 IGVNTRSCNIILSAYLSSGDFVKAEK 528
+ N + +S Y+ + +F A+K
Sbjct: 518 LKPNAFTYGAFISGYIEASEFASADK 543
>sp|Q3ECH5|PP107_ARATH Pentatricopeptide repeat-containing protein At1g66345,
mitochondrial OS=Arabidopsis thaliana GN=At1g66345 PE=1
SV=1
Length = 544
Score = 67.4 bits (163), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 88/389 (22%), Positives = 165/389 (42%), Gaps = 22/389 (5%)
Query: 150 LAVHC-MRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIIN 208
L V C +IR E GF V++ + + L T L Y K + I++ I+
Sbjct: 169 LLVQCYAKIRYLELGFDVFKRLCDCGFTLSVITLNT-LIHYSSKSKIDDLVWRIYECAID 227
Query: 209 QGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSL--HNSL-FRALV 265
+ P+E+T I+I +G L E + +R+ G + PS+ + SL FR L
Sbjct: 228 KRIYPNEITIRIMIQVLCK---EGRLKEVVDLLDRIC---GKRCLPSVIVNTSLVFRVL- 280
Query: 266 SKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQ 325
+ ++++ + LL + + YS +++ + + ++ R EM Q
Sbjct: 281 ------EEMRIEESMSLLKRLLMKNMVVDTIGYSIVVYAKAKEGDLVSARKVF--DEMLQ 332
Query: 326 AGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMK 385
GF V +RVC ++GDV++AE+ + ES F + +A+ G K
Sbjct: 333 RGFSANSFVYTVFVRVCCEKGDVKEAERLLSEMEESGVSPYDETFNCLIGGFARFGWEEK 392
Query: 386 SLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTN 445
LE M R S A++++++ + K E ++ + ++ G P +Y +L
Sbjct: 393 GLEYCEVMVTRGLMPSCSAFNEMVKSVSKIENVNRANEILTKSIDKGFVPDEHTYSHLIR 452
Query: 446 MYLNLGMHDR-LHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIG 504
++ D+ L L + K P ++ + L G +E E+ M + I
Sbjct: 453 GFIEGNDIDQALKLFYEMEYRKMSPGFEVFRSLIVGLCTCGKVEAGEKYLKIMKK-RLIE 511
Query: 505 VNTRSCNIILSAYLSSGDFVKAEKIYDLM 533
N + ++ A+ GD A+++Y+ M
Sbjct: 512 PNADIYDALIKAFQKIGDKTNADRVYNEM 540
>sp|Q9SY07|PP302_ARATH Pentatricopeptide repeat-containing protein At4g02820,
mitochondrial OS=Arabidopsis thaliana GN=At4g02820 PE=2
SV=1
Length = 532
Score = 66.6 bits (161), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 85/401 (21%), Positives = 165/401 (41%), Gaps = 43/401 (10%)
Query: 156 RIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSE 215
+I+ + + EWM+ Q + D + K R F+D+ P +
Sbjct: 105 KIKRYKHALEICEWMVVQEDIKLQAGDYAVHLDLISKIRGLNSAEKFFEDM------PDQ 158
Query: 216 MTFHILIVAYLSAPVQGCLDE----------------ACSIYNRMIQL----GGYQPRPS 255
M H + L + VQ L + +C YN M+ + G ++ P
Sbjct: 159 MRGHAACTSLLHSYVQNKLSDKAEALFEKMGECGFLKSCLPYNHMLSMYISRGQFEKVPV 218
Query: 256 LHNSL-FRA---LVSKPGGLSKYY----LQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSY 307
L L R +V+ L+ + ++ AE ++ L YS L L++
Sbjct: 219 LIKELKIRTSPDIVTYNLWLTAFASGNDVEGAEKVYLKAKEEKLNPDWVTYSVLTNLYAK 278
Query: 308 QDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPT 367
DN++K R++L KEM++ ++ + S++ + A GD + TW ++ S +
Sbjct: 279 TDNVEKARLAL--KEMEKLVSKKNRVAYASLISLHANLGDKDGVNLTWKKVKSSFKKMND 336
Query: 368 PAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKE 427
++ + A K+GEF ++ ++ E + G+ + I+ +E L E +
Sbjct: 337 AEYLSMISAVVKLGEFEQAKGLYDEWESVSGTGDARIPNLILAEYMNRDEVLLGEKFYER 396
Query: 428 FVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRP---NRTIYGIYLESLKNA 484
VE G+ P ++ LT YL +++ F + ++ + N + + L+
Sbjct: 397 IVEKGINPSYSTWEILTWAYLKRKDMEKVLDCFGKAIDSVKKWTVNVRLVKGACKELEEQ 456
Query: 485 GNIEKAEEIFNHMHSDQTIG-VNTRSCNIILSAYLSSGDFV 524
GN++ AE++ + Q G VNT+ N +L Y +G+
Sbjct: 457 GNVKGAEKLMTLL---QKAGYVNTQLYNSLLRTYAKAGEMA 494
>sp|Q9SV46|PP282_ARATH Pentatricopeptide repeat-containing protein At3g54980,
mitochondrial OS=Arabidopsis thaliana GN=At3g54980 PE=2
SV=1
Length = 851
Score = 66.6 bits (161), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 79/342 (23%), Positives = 138/342 (40%), Gaps = 51/342 (14%)
Query: 231 QGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSG 290
QG DEA + ++M + G P +N++ G + + A +F N+L G
Sbjct: 456 QGKTDEATELLSKM-ESRGIGPNVVSYNNVML------GHCRQKNMDLARIVFSNILEKG 508
Query: 291 LEIQKDIYSGLI---------------WLHSYQDNIDKERI---SLLKKEMQQAGFEEGK 332
L+ YS LI H NI+ + +++ + + +
Sbjct: 509 LKPNNYTYSILIDGCFRNHDEQNALEVVNHMTSSNIEVNGVVYQTIINGLCKVGQTSKAR 568
Query: 333 EVLLSVL---RVCA-------------KEGDVEDAEKTWLRLLESDNGIPTPAFVYK--M 374
E+L +++ R+C KEG+++ A + + NGI Y M
Sbjct: 569 ELLANMIEEKRLCVSCMSYNSIIDGFFKEGEMDSAVAAYEEM--CGNGISPNVITYTSLM 626
Query: 375 EAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMK 434
K ++LE+ EM+ + +PAY +I+ CK E +L E +E G+
Sbjct: 627 NGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDGFCKRSNMESASALFSELLEEGLN 686
Query: 435 PLMPSYINLTNMYLNLG-MHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEI 493
P P Y +L + + NLG M L L + R + Y ++ L GN+ A E+
Sbjct: 687 PSQPIYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLIDGLLKDGNLILASEL 746
Query: 494 FNHMHSDQTIGVNTRSC--NIILSAYLSSGDFVKAEKIYDLM 533
+ M Q +G+ +I++ G FVK K+++ M
Sbjct: 747 YTEM---QAVGLVPDEIIYTVIVNGLSKKGQFVKVVKMFEEM 785
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 99/438 (22%), Positives = 165/438 (37%), Gaps = 94/438 (21%)
Query: 178 FDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQ-GCLDE 236
F F + ++ +Y+ + D DI+NQ + F + LSA VQ L E
Sbjct: 157 FGFEVNSRAFNYLLNAYSKDRQTDHAVDIVNQMLELDVIPFFPYVNRTLSALVQRNSLTE 216
Query: 237 ACSIYNRMIQLG--GYQPRPSLHNSLFRALV--SKPGGLSKYYLQQAEFIFHNLLTSGLE 292
A +Y+RM+ +G G L L RA + KP +A + + G E
Sbjct: 217 AKELYSRMVAIGVDGDNVTTQL---LMRASLREEKPA--------EALEVLSRAIERGAE 265
Query: 293 IQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGF-EEGKEVLLSVLRVCAKEGDVEDA 351
+YS + + + +D + L +EM++ +E SV+ K+G+++DA
Sbjct: 266 PDSLLYS--LAVQACCKTLDLAMANSLLREMKEKKLCVPSQETYTSVILASVKQGNMDDA 323
Query: 352 EKTWLRLLESDNGI----------------------------------PTP---AFVYKM 374
+ +L +GI P+P F +
Sbjct: 324 IRLKDEMLS--DGISMNVVAATSLITGHCKNNDLVSALVLFDKMEKEGPSPNSVTFSVLI 381
Query: 375 EAYAKIGEFMKSLEIFREM-------------------------QERL---------GSA 400
E + K GE K+LE +++M +E L G A
Sbjct: 382 EWFRKNGEMEKALEFYKKMEVLGLTPSVFHVHTIIQGWLKGQKHEEALKLFDESFETGLA 441
Query: 401 SVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAF 460
+V + I+ LCK +T+ L+ + G+ P + SY N+ + D + F
Sbjct: 442 NVFVCNTILSWLCKQGKTDEATELLSKMESRGIGPNVVSYNNVMLGHCRQKNMDLARIVF 501
Query: 461 SECLEK-CRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS 519
S LEK +PN Y I ++ + + A E+ NHM S I VN I++
Sbjct: 502 SNILEKGLKPNNYTYSILIDGCFRNHDEQNALEVVNHMTS-SNIEVNGVVYQTIINGLCK 560
Query: 520 SGDFVKAEKIYDLMCLKK 537
G KA ++ M +K
Sbjct: 561 VGQTSKARELLANMIEEK 578
Score = 38.1 bits (87), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 65/321 (20%), Positives = 128/321 (39%), Gaps = 47/321 (14%)
Query: 126 HKGGTLVRIL--NAQKKWLRQEDGTY--LAVHCMRIRENETGFRVYEWMMQQHWYRFDFA 181
K L RI+ N +K L+ + TY L C R + + V M + +
Sbjct: 491 QKNMDLARIVFSNILEKGLKPNNYTYSILIDGCFRNHDEQNALEVVNHMTSSN-IEVNGV 549
Query: 182 LATKLADYMGKERKFAKCRDIFDDIINQGRV-PSEMTFHILIVAYLSAPVQGCLDEACSI 240
+ + + + K + +K R++ ++I + R+ S M+++ +I + +G +D A +
Sbjct: 550 VYQTIINGLCKVGQTSKARELLANMIEEKRLCVSCMSYNSIIDGFFK---EGEMDSAVAA 606
Query: 241 YNRMIQLGGYQPRPSLHNSLFRALVSK-----------------------------PGGL 271
Y M G P + SL L G
Sbjct: 607 YEEMCG-NGISPNVITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDGFC 665
Query: 272 SKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISL-LKKEMQQAGFEE 330
+ ++ A +F LL GL + IY+ LI S N+ +L L K+M + G
Sbjct: 666 KRSNMESASALFSELLEEGLNPSQPIYNSLI---SGFRNLGNMVAALDLYKKMLKDGLRC 722
Query: 331 GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKM--EAYAKIGEFMKSLE 388
+++ K+G++ A + + + G+ +Y + +K G+F+K ++
Sbjct: 723 DLGTYTTLIDGLLKDGNLILASELYTEMQAV--GLVPDEIIYTVIVNGLSKKGQFVKVVK 780
Query: 389 IFREMQERLGSASVPAYHKII 409
+F EM++ + +V Y+ +I
Sbjct: 781 MFEEMKKNNVTPNVLIYNAVI 801
>sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710,
mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2
SV=1
Length = 987
Score = 66.2 bits (160), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 81/356 (22%), Positives = 150/356 (42%), Gaps = 32/356 (8%)
Query: 195 KFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRP 254
K K R+ + + VP + + LI A + +EA NRM + P
Sbjct: 282 KVGKWREALTLVETENFVPDTVFYTKLISGLCEASL---FEEAMDFLNRM-RATSCLPNV 337
Query: 255 SLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKE 314
+++L G L+K L + + + + ++ G I++ L+ H+Y + D
Sbjct: 338 VTYSTLL------CGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLV--HAYCTSGDHS 389
Query: 315 RISLLKKEMQQAGFEEGKEVL-LSVLRVCAKEG----DVED-AEKTWLRLLESD---NGI 365
L K+M + G G V + + +C + D+ D AEK + +L + N I
Sbjct: 390 YAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKI 449
Query: 366 PTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVP---AYHKIIELLCKAEETELTE 422
+F G++ K+ + REM +G +P Y K++ LC A + EL
Sbjct: 450 NVSSFT---RCLCSAGKYEKAFSVIREM---IGQGFIPDTSTYSKVLNYLCNASKMELAF 503
Query: 423 SLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE-KCRPNRTIYGIYLESL 481
L +E G+ + +Y + + + G+ ++ F+E E C PN Y + +
Sbjct: 504 LLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAY 563
Query: 482 KNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKK 537
A + A E+F M S+ + N + + ++ + +G KA +I++ MC K
Sbjct: 564 LKAKKVSYANELFETMLSEGCLP-NIVTYSALIDGHCKAGQVEKACQIFERMCGSK 618
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/279 (19%), Positives = 117/279 (41%), Gaps = 22/279 (7%)
Query: 192 KERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMI------ 245
K +K + ++F+ ++++G +P+ +T+ LI + A G +++AC I+ RM
Sbjct: 565 KAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKA---GQVEKACQIFERMCGSKDVP 621
Query: 246 -------QLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIY 298
Q RP++ + AL+ G + +++A + + G E + +Y
Sbjct: 622 DVDMYFKQYDDNSERPNVVT--YGALLD--GFCKSHRVEEARKLLDAMSMEGCEPNQIVY 677
Query: 299 SGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRL 358
LI +D+ + +K EM + GF S++ K + A K ++
Sbjct: 678 DALIDGLCKVGKLDEAQ--EVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKM 735
Query: 359 LESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEET 418
LE+ + ++ K+G+ ++ ++ + M+E+ +V Y +I+ +
Sbjct: 736 LENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKI 795
Query: 419 ELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLH 457
E L++ G+ P +Y L + G D H
Sbjct: 796 ETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAH 834
>sp|P03882|SCE1_YEAST Intron-encoded endonuclease I-SceI OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SCEI PE=1 SV=1
Length = 235
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 98/207 (47%), Gaps = 21/207 (10%)
Query: 567 LSSEQRENLIGLLLGGLCIESDEKRKRHMIRFQFNENSRMHSVLRRYLYDQYHEWLHPSF 626
L+ EQ E IGL+LG I S ++ K + ++F++ + M V LYDQ+ L P
Sbjct: 29 LNIEQFEAGIGLILGDAYIRSRDEGKTYCMQFEWKNKAYMDHVC--LLYDQWV--LSPPH 84
Query: 627 KVSD----GNDDIPYKYSTISHPYFCFYADKFWPKGRLVIP-KLIHRWLTPRALAYWFM- 680
K GN I + T H F A+ F + IP L+ +LTP +LAYWFM
Sbjct: 85 KKERVNHLGNLVITWGAQTFKHQAFNKLANLFIVNNKKTIPNNLVENYLTPMSLAYWFMD 144
Query: 681 ------YGGHRTSVGDILLKLKVSSEGIALVFKTLKAR-SLDCRVK--KKGRVFWIGFLG 731
Y + T+ +L + E + + K L+ + L+C VK K + +I +
Sbjct: 145 DGGKWDYNKNSTNKSIVLNTQSFTFEEVEYLVKGLRNKFQLNCYVKINKNKPIIYIDSMS 204
Query: 732 SNSTLFWKLIEPYVLDELKEDLLNEGS 758
+F+ LI+PY++ ++ L N S
Sbjct: 205 --YLIFYNLIKPYLIPQMMYKLPNTIS 229
>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400,
chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2
SV=1
Length = 918
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 79/368 (21%), Positives = 156/368 (42%), Gaps = 13/368 (3%)
Query: 134 ILNAQKKWLRQEDGTYLAVHCMRIRENETGFRVYEWMMQQHWYRFDFA-LATKLADYMGK 192
+L+ + K +D TY+ E + YE+ +++ + + LA+ + +G+
Sbjct: 186 MLSFESKLCGSDDCTYIIRELGNRNECDKAVGFYEFAVKRERRKNEQGKLASAMISTLGR 245
Query: 193 ERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQP 252
K + IF+ G + F LI AY + G +EA S++N M + Y
Sbjct: 246 YGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRS---GLHEEAISVFNSMKE---YGL 299
Query: 253 RPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNID 312
RP+L + A++ G + Q A+F F + +G++ + ++ L+ + S +
Sbjct: 300 RPNL--VTYNAVIDACGKGGMEFKQVAKF-FDEMQRNGVQPDRITFNSLLAVCSRGGLWE 356
Query: 313 KERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVY 372
R L EM E+ ++L K G ++ A + ++ ++
Sbjct: 357 AARN--LFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYST 414
Query: 373 KMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETG 432
++ +AK G F ++L +F EM+ + +Y+ ++ + K +E +++E G
Sbjct: 415 VIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVG 474
Query: 433 MKPLMPSYINLTNMYLNLGMHDRLHLAFSEC-LEKCRPNRTIYGIYLESLKNAGNIEKAE 491
+K + +Y L Y G +D + F+E E PN Y ++ G ++A
Sbjct: 475 IKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAM 534
Query: 492 EIFNHMHS 499
EIF S
Sbjct: 535 EIFREFKS 542
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/175 (21%), Positives = 86/175 (49%), Gaps = 4/175 (2%)
Query: 282 IFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRV 341
+F + G+ + + Y+ L+ +++ + +E + +L+ EM G ++ ++L
Sbjct: 431 LFGEMRYLGIALDRVSYNTLLSIYT-KVGRSEEALDILR-EMASVGIKKDVVTYNALLGG 488
Query: 342 CAKEGDVEDAEKTWLRLLESDNGIPTP-AFVYKMEAYAKIGEFMKSLEIFREMQERLGSA 400
K+G ++ +K + + + ++ +P + ++ Y+K G + +++EIFRE + A
Sbjct: 489 YGKQGKYDEVKKVFTEM-KREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRA 547
Query: 401 SVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDR 455
V Y +I+ LCK SL+ E + G+ P + +Y ++ + + DR
Sbjct: 548 DVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDR 602
>sp|Q9SSF9|PP123_ARATH Pentatricopeptide repeat-containing protein At1g74750
OS=Arabidopsis thaliana GN=At1g74750 PE=2 SV=1
Length = 855
Score = 64.3 bits (155), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/312 (21%), Positives = 134/312 (42%), Gaps = 41/312 (13%)
Query: 160 NETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFH 219
N GF + W+ +Q ++ D T + +G+ ++F + + D+++ G P+ +T++
Sbjct: 341 NALGF--FYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYN 398
Query: 220 ILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPG---------- 269
LI +Y A L EA +++N+M Q G +P + +L + +K G
Sbjct: 399 RLIHSYGRA---NYLKEAMNVFNQM-QEAGCEPDRVTYCTLID-IHAKAGFLDIAMDMYQ 453
Query: 270 -----GLS---------------KYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQD 309
GLS +L A +F ++ G ++ +I LH+
Sbjct: 454 RMQEAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKAR 513
Query: 310 NIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPT-P 368
N E L ++MQ AGF+ K V+ V G +E+AE + ++ N +P P
Sbjct: 514 NY--ETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAE-MQRKNWVPDEP 570
Query: 369 AFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEF 428
+ ++ + K G K+ + ++ M + +VP + ++ + +L++
Sbjct: 571 VYGLLVDLWGKAGNVDKAWQWYQAMLQAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSM 630
Query: 429 VETGMKPLMPSY 440
+ G+ P + +Y
Sbjct: 631 LALGLHPSLQTY 642
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 110/237 (46%), Gaps = 10/237 (4%)
Query: 286 LLTSGLEIQKDIYSGLIWLHSY-QDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAK 344
++ G + Y+ LI HSY + N KE +++ +MQ+AG E + +++ + AK
Sbjct: 385 MVRDGCKPNTVTYNRLI--HSYGRANYLKEAMNVFN-QMQEAGCEPDRVTYCTLIDIHAK 441
Query: 345 EGDVEDAEKTWLRLLESDNGIPTPAFVYK--MEAYAKIGEFMKSLEIFREMQERLGSASV 402
G ++ A + R+ E+ G+ F Y + K G + +F EM + + ++
Sbjct: 442 AGFLDIAMDMYQRMQEA--GLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNL 499
Query: 403 PAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSE 462
++ +I L KA E L ++ G +P +Y + + + G + F+E
Sbjct: 500 VTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAE 559
Query: 463 CLEKC-RPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYL 518
K P+ +YG+ ++ AGN++KA + + M + N +CN +LS +L
Sbjct: 560 MQRKNWVPDEPVYGLLVDLWGKAGNVDKAWQWYQAM-LQAGLRPNVPTCNSLLSTFL 615
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 64.3 bits (155), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 68/298 (22%), Positives = 131/298 (43%), Gaps = 15/298 (5%)
Query: 202 IFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLF 261
+F ++ G VP TF+ LI AY G ++A ++Y RM+ G P S +N++
Sbjct: 476 VFKEMKRAGFVPERETFNTLISAYSRC---GSFEQAMTVYRRMLD-AGVTPDLSTYNTVL 531
Query: 262 RALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKK 321
AL GG+ +Q+E + + + + Y L LH+Y + + + L +
Sbjct: 532 AALAR--GGM----WEQSEKVLAEMEDGRCKPNELTYCSL--LHAYANGKEIGLMHSLAE 583
Query: 322 EMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIG 381
E+ E +L +++ VC+K + +AE+ + L E + Y +
Sbjct: 584 EVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQ 643
Query: 382 EFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYI 441
K+ + M+ER + S+ Y+ ++ + ++ + +E +++E + G+KP + SY
Sbjct: 644 MVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYN 703
Query: 442 NLTNMYL-NLGMHDRLHLAFSECLEK-CRPNRTIYGIYLESLKNAGNIEKAEEIFNHM 497
+ Y N M D + FSE P+ Y ++ S E+A + +M
Sbjct: 704 TVIYAYCRNTRMRDASRI-FSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYM 760
Score = 57.0 bits (136), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 87/436 (19%), Positives = 170/436 (38%), Gaps = 77/436 (17%)
Query: 150 LAVHCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQ 209
L C R ++ +V+E M + + +D L D GK + + + ++++
Sbjct: 285 LITCCKRGSLHQEAAQVFEEM-KAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLN 343
Query: 210 GRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQ-------------LGGYQPRPSL 256
G PS +T++ LI AY G LDEA + N+M + L G++ +
Sbjct: 344 GFSPSIVTYNSLISAYAR---DGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKV 400
Query: 257 HNSL-----FRALVSKPG-----GLSKYYLQQAEF-----IFHNLLTSGLEIQKDIYSGL 301
+++ R KP K Y + +F IF + GL ++ L
Sbjct: 401 ESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTL 460
Query: 302 IWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLES 361
+ + Q+ +D E +S + KEM++AGF +E +++
Sbjct: 461 LAVFG-QNGMDSE-VSGVFKEMKRAGFVPERETFNTLI---------------------- 496
Query: 362 DNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELT 421
AY++ G F +++ ++R M + + + Y+ ++ L + E +
Sbjct: 497 -------------SAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQS 543
Query: 422 ESLMKEFVETGMKPLMPSYINLTNMYLN---LG-MHDRLHLAFSECLEKCRPNRTIYGIY 477
E ++ E + KP +Y +L + Y N +G MH +S +E P +
Sbjct: 544 EKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIE---PRAVLLKTL 600
Query: 478 LESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKK 537
+ + +AE F+ + ++ + + N ++S Y KA + D M +
Sbjct: 601 VLVCSKCDLLPEAERAFSELK-ERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERG 659
Query: 538 YEIESAWMEKLDYVLS 553
+ A L Y+ S
Sbjct: 660 FTPSMATYNSLMYMHS 675
Score = 35.0 bits (79), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 39/209 (18%), Positives = 89/209 (42%), Gaps = 11/209 (5%)
Query: 334 VLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREM 393
V+ ++ + KEG V A + L E + ++ + A+A G + +++ +F++M
Sbjct: 175 VVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKM 234
Query: 394 QERLGSASVPAYHKIIELLCKAEET-ELTESLMKEFVETGMKPLMPSYINLTNMYLNLGM 452
+E ++ Y+ I+ + K SL+++ G+ P +Y N +
Sbjct: 235 EEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTY----NTLITCCK 290
Query: 453 HDRLHLAFSECLEKCRP-----NRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNT 507
LH ++ E+ + ++ Y L+ + ++A ++ N M + +
Sbjct: 291 RGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLN-GFSPSI 349
Query: 508 RSCNIILSAYLSSGDFVKAEKIYDLMCLK 536
+ N ++SAY G +A ++ + M K
Sbjct: 350 VTYNSLISAYARDGMLDEAMELKNQMAEK 378
>sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850,
chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1
Length = 862
Score = 63.9 bits (154), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/256 (21%), Positives = 118/256 (46%), Gaps = 14/256 (5%)
Query: 179 DFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEAC 238
D + L + GK R+ K D+ ++ + G +P ++++L+ AY + G + EA
Sbjct: 281 DLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKS---GSIKEAM 337
Query: 239 SIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIY 298
++++M Q G P + ++ L G S Y +F + +S + Y
Sbjct: 338 GVFHQM-QAAGCTPNANTYSVLLNLF-----GQSGRY-DDVRQLFLEMKSSNTDPDAATY 390
Query: 299 SGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRL 358
+ LI + + KE ++L +M + E E ++ C K G EDA K L+
Sbjct: 391 NILIEVFG-EGGYFKEVVTLFH-DMVEENIEPDMETYEGIIFACGKGGLHEDARKI-LQY 447
Query: 359 LESDNGIPTP-AFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEE 417
+ +++ +P+ A+ +EA+ + + ++L F M E + S+ +H ++ +
Sbjct: 448 MTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGL 507
Query: 418 TELTESLMKEFVETGM 433
+ +E+++ V++G+
Sbjct: 508 VKESEAILSRLVDSGI 523
Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 93/494 (18%), Positives = 182/494 (36%), Gaps = 73/494 (14%)
Query: 129 GTLVRILNAQKKWLRQEDGTYLAVHCMRIRENETGFRVYEWMMQQHWYRFDFALATKLAD 188
G++ R L+ K L D + + + R++++M +Q W + + + T +
Sbjct: 90 GSIARCLDIFKNKLSLNDFALVFKEFAGRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMIS 149
Query: 189 YMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAY----------------------- 225
+G+E KC ++FD++ +QG S ++ LI AY
Sbjct: 150 LLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKISP 209
Query: 226 --------LSAPVQGCLD-EACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYL 276
++A +G LD E ++ G QP +N+L A + G
Sbjct: 210 SILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLG------ 263
Query: 277 QQAEFIFHNLLTSGL------------------EIQK---------------DIYSGLIW 303
+AE +F + G+ ++K DI S +
Sbjct: 264 DEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVL 323
Query: 304 LHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDN 363
L +Y + + + +MQ AG +L + + G +D + +L + S+
Sbjct: 324 LEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNT 383
Query: 364 GIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTES 423
+ +E + + G F + + +F +M E + Y II K E
Sbjct: 384 DPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARK 443
Query: 424 LMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE-KCRPNRTIYGIYLESLK 482
+++ + P +Y + + +++ +AF+ E P+ + L S
Sbjct: 444 ILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFA 503
Query: 483 NAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIES 542
G ++++E I + + D I N + N + AY G F +A K Y M + + +
Sbjct: 504 RGGLVKESEAILSRL-VDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDE 562
Query: 543 AWMEKLDYVLSLNR 556
+E + V S R
Sbjct: 563 RTLEAVLSVYSFAR 576
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 63.5 bits (153), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 74/327 (22%), Positives = 136/327 (41%), Gaps = 18/327 (5%)
Query: 171 MQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPV 230
M+ + D + L + + K+ + ++I + +P +TF LI ++
Sbjct: 271 MEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVK--- 327
Query: 231 QGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSG 290
+G L EA +YN MI G P +NSL G + L +A +F +++ G
Sbjct: 328 EGKLLEAKELYNEMITRG-IAPDTITYNSLI------DGFCKENCLHEANQMFDLMVSKG 380
Query: 291 LEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVED 350
E DI + I ++SY + L +E+ G +++ + G +
Sbjct: 381 CE--PDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNA 438
Query: 351 AEKTWLRLLESDNGIPTPAFVYK--MEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKI 408
A++ + ++ G+P Y ++ GE K+LEIF +MQ+ + + Y+ I
Sbjct: 439 AKELFQEMVS--RGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNII 496
Query: 409 IELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEK-C 467
I +C A + + SL + G+KP + +Y + G + F + E C
Sbjct: 497 IHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGC 556
Query: 468 RPNRTIYGIYLES-LKNAGNIEKAEEI 493
P+ Y I + + L +G I E I
Sbjct: 557 TPDDFTYNILIRAHLGGSGLISSVELI 583
Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 2/163 (1%)
Query: 378 AKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLM 437
K G +L++FR+M+ER ASV Y +I+ LCK + SL E G+K +
Sbjct: 221 CKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADV 280
Query: 438 PSYINLTNMYLNLGMHDRLHLAFSECLEK-CRPNRTIYGIYLESLKNAGNIEKAEEIFNH 496
+Y +L N G D E + + P+ + ++ G + +A+E++N
Sbjct: 281 VTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNE 340
Query: 497 MHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYE 539
M + + I +T + N ++ + +A +++DLM K E
Sbjct: 341 MIT-RGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCE 382
Score = 39.3 bits (90), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 65/360 (18%), Positives = 135/360 (37%), Gaps = 84/360 (23%)
Query: 210 GRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPG 269
G P +TF L+ + ++G + EA ++ +RM+++ + RP L
Sbjct: 135 GYEPDTITFSTLVNGFC---LEGRVSEAVALVDRMVEM---KQRPDL------------- 175
Query: 270 GLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFE 329
+ + L +GL ++ + L+ ID+ M + GF+
Sbjct: 176 ------------VTVSTLINGLCLKGRVSEALVL-------IDR---------MVEYGFQ 207
Query: 330 EGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEI 389
+ VL K G+ A + ++ E + + +++ K G F +L +
Sbjct: 208 PDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSL 267
Query: 390 FREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLN 449
F EM+ + A V Y +I LC + + +++E + + P + ++ L ++++
Sbjct: 268 FNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVK 327
Query: 450 LG----------------------MHDRLHLAFSE--CLEK------------CRPNRTI 473
G ++ L F + CL + C P+
Sbjct: 328 EGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVT 387
Query: 474 YGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLM 533
Y I + S A ++ +F + S I NT + N ++ + SG A++++ M
Sbjct: 388 YSILINSYCKAKRVDDGMRLFREISSKGLIP-NTITYNTLVLGFCQSGKLNAAKELFQEM 446
>sp|Q3E9F0|PP392_ARATH Pentatricopeptide repeat-containing protein At5g18475
OS=Arabidopsis thaliana GN=At5g18475 PE=2 SV=1
Length = 506
Score = 63.5 bits (153), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 84/402 (20%), Positives = 167/402 (41%), Gaps = 19/402 (4%)
Query: 136 NAQKKWLRQEDGTYLAVHCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERK 195
N + K++ E L R R+ + ++ QQ + + A + L D + + +K
Sbjct: 48 NPKTKFISHESAVSLM---KRERDPQGVLDIFNKASQQKGFNHNNATYSVLLDNLVRHKK 104
Query: 196 FAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPS 255
F I + + E F L+ + + + D+ ++N + + +P +
Sbjct: 105 FLAVDAILHQMKYETCRFQESLFLNLMRHFSRSDLH---DKVMEMFNLIQVIARVKPSLN 161
Query: 256 LHNSLFRALV-SKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKE 314
++ L+ S LS+ L A+ HNL GL+ I++ L+ H +I+
Sbjct: 162 AISTCLNLLIDSGEVNLSRKLLLYAK---HNL---GLQPNTCIFNILVKHHCKNGDINFA 215
Query: 315 RISLLKKEMQQAGFEEGKEVLLSVLRVCA-KEGDVEDAEKTWLRLLESDNGIPTPA-FVY 372
L+ +EM+++G + S L C ++A + + ++ + P P F
Sbjct: 216 --FLVVEEMKRSGISYPNSITYSTLMDCLFAHSRSKEAVELFEDMISKEGISPDPVTFNV 273
Query: 373 KMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETG 432
+ + + GE ++ +I M++ + +V Y ++ CK + + + E +TG
Sbjct: 274 MINGFCRAGEVERAKKILDFMKKNGCNPNVYNYSALMNGFCKVGKIQEAKQTFDEVKKTG 333
Query: 433 MKPLMPSYINLTNMYLNLGMHDRLHLAFSEC-LEKCRPNRTIYGIYLESLKNAGNIEKAE 491
+K Y L N + G D E +CR + Y + L L + G E+A
Sbjct: 334 LKLDTVGYTTLMNCFCRNGETDEAMKLLGEMKASRCRADTLTYNVILRGLSSEGRSEEAL 393
Query: 492 EIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLM 533
++ + S + + +N S IIL+A +G+ KA K +M
Sbjct: 394 QMLDQWGS-EGVHLNKGSYRIILNALCCNGELEKAVKFLSVM 434
>sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840
OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2
Length = 1096
Score = 63.2 bits (152), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 79/357 (22%), Positives = 148/357 (41%), Gaps = 30/357 (8%)
Query: 186 LADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMI 245
L + E K + +++++ G P+ +TF+ LI ++S +G EA ++ M+
Sbjct: 304 LINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHIS---EGNFKEALKMF-YMM 359
Query: 246 QLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEF-----IFHNLLTSGLEIQKDIYSG 300
+ G P + L L + AEF + + +G+ + + Y+G
Sbjct: 360 EAKGLTPSEVSYGVLLDGLC-----------KNAEFDLARGFYMRMKRNGVCVGRITYTG 408
Query: 301 LIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLE 360
+I +D E + LL EM + G + +++ K G + A++ R+
Sbjct: 409 MIDGLCKNGFLD-EAVVLLN-EMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYR 466
Query: 361 ---SDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEE 417
S NGI +Y ++G +++ I+ M + ++ ++ LCKA +
Sbjct: 467 VGLSPNGIIYSTLIYNC---CRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGK 523
Query: 418 TELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCR-PNRTIYGI 476
E M+ G+ P S+ L N Y N G + F E + P YG
Sbjct: 524 VAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGS 583
Query: 477 YLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLM 533
L+ L G++ +AE+ +H+ V+T N +L+A SG+ KA ++ M
Sbjct: 584 LLKGLCKGGHLREAEKFLKSLHAVPA-AVDTVMYNTLLTAMCKSGNLAKAVSLFGEM 639
Score = 38.5 bits (88), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 49/236 (20%), Positives = 97/236 (41%), Gaps = 45/236 (19%)
Query: 338 VLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEA----YAKIGEFMKSLEIFREM 393
++RV +EG ++D+ + + RL+ P+ VY A K GE + +EM
Sbjct: 129 LIRVYLREGMIQDSLEIF-RLMGLYGFNPS---VYTCNAILGSVVKSGEDVSVWSFLKEM 184
Query: 394 QERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYL----- 448
+R V ++ +I +LC E + LM++ ++G P + +Y + + Y
Sbjct: 185 LKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRF 244
Query: 449 ----------------------NLGMHD--------RLHLAFSECLEK-CRPNRTIYGIY 477
N+ +HD + +L + ++ PN Y
Sbjct: 245 KAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTL 304
Query: 478 LESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLM 533
+ N G + A ++ N M S + N + N ++ ++S G+F +A K++ +M
Sbjct: 305 INGFSNEGKVLIASQLLNEMLS-FGLSPNHVTFNALIDGHISEGNFKEALKMFYMM 359
Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 76/403 (18%), Positives = 153/403 (37%), Gaps = 106/403 (26%)
Query: 213 PSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLS 272
P TF+ILI + +G +++ + +M + GY P +N++
Sbjct: 191 PDVATFNILINVLCA---EGSFEKSSYLMQKM-EKSGYAPTIVTYNTVLH---------- 236
Query: 273 KYYLQQAEF-----IFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERIS---LLKKEMQ 324
+Y ++ F + ++ + G++ Y+ LI D RI+ LL ++M+
Sbjct: 237 -WYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLI-----HDLCRSNRIAKGYLLLRDMR 290
Query: 325 QAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLE---SDNGIPTPAFVYKMEAYAKIG 381
+ + +++ + EG V A + +L S N + A + + + G
Sbjct: 291 KRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALI---DGHISEG 347
Query: 382 EFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTES------------------ 423
F ++L++F M+ + + S +Y +++ LCK E +L
Sbjct: 348 NFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYT 407
Query: 424 -----------------LMKEFVETGMKPLMPSYINLTNMYLNLGMHD-------RLH-- 457
L+ E + G+ P + +Y L N + +G R++
Sbjct: 408 GMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRV 467
Query: 458 -----------LAFSECLEKC----------------RPNRTIYGIYLESLKNAGNIEKA 490
L ++ C C + + + + SL AG + +A
Sbjct: 468 GLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEA 527
Query: 491 EEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLM 533
EE M SD + NT S + +++ Y +SG+ +KA ++D M
Sbjct: 528 EEFMRCMTSDGILP-NTVSFDCLINGYGNSGEGLKAFSVFDEM 569
>sp|P0C8Q6|PP368_ARATH Putative pentatricopeptide repeat-containing protein At5g08310,
mitochondrial OS=Arabidopsis thaliana GN=At5g08310 PE=3
SV=1
Length = 832
Score = 63.2 bits (152), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 71/309 (22%), Positives = 126/309 (40%), Gaps = 23/309 (7%)
Query: 167 YEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYL 226
+ W +Q YR D +A + + R+ A + + D++N S F I
Sbjct: 93 FNWASKQEGYRNDMYAYNAMASILSRARQNASLKALVVDVLNSRCFMSPGAFGFFIRCLG 152
Query: 227 SAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNL 286
+A G +DEA S+++R+ ++G P +N L A +SK S ++ E +
Sbjct: 153 NA---GLVDEASSVFDRVREMGLCVPNAYTYNCLLEA-ISKSNSSS---VELVEARLKEM 205
Query: 287 LTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEG 346
G K + + L Y + ER + E+ G+ + + V+ C K G
Sbjct: 206 RDCGFHFDKFTLTPV--LQVYCNTGKSERALSVFNEILSRGWLDEHISTILVVSFC-KWG 262
Query: 347 DVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYH 406
V+ A + L E D + + + + K K+ ++F +M+ +A + Y
Sbjct: 263 QVDKAFELIEMLEERDIRLNYKTYCVLIHGFVKESRIDKAFQLFEKMRRMGMNADIALYD 322
Query: 407 KIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEK 466
+I LCK ++ E+ SL E +G+ P + G+ +L +FSE E
Sbjct: 323 VLIGGLCKHKDLEMALSLYLEIKRSGIPP-------------DRGILGKLLCSFSEESEL 369
Query: 467 CRPNRTIYG 475
R I G
Sbjct: 370 SRITEVIIG 378
Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 113/260 (43%), Gaps = 36/260 (13%)
Query: 208 NQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSK 267
N+ +P + I+I + A +D A ++ + ++Q G P P ++N++ + +
Sbjct: 432 NKAILPDSDSLSIVINCLVKANK---VDMAVTLLHDIVQ-NGLIPGPMMYNNIIEGMCKE 487
Query: 268 PGGLSKYYLQQAEFIFHNLLTSGLEIQK----DIYSGLIWLHSYQDNIDKERISLLKKEM 323
G S+ L+ + + +G+E + IY L + +D L K+M
Sbjct: 488 --GRSEESLK----LLGEMKDAGVEPSQFTLNCIYGCLAERCDFVGALD------LLKKM 535
Query: 324 QQAGFEE-GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEA-YAKIG 381
+ GFE K V ++C + G DA K + + F+ M A A I
Sbjct: 536 RFYGFEPWIKHTTFLVKKLC-ENGRAVDACKYL-------DDVAGEGFLGHMVASTAAID 587
Query: 382 EFMKS------LEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKP 435
+K+ LE+FR++ V AYH +I+ LCKA T + L E V G+KP
Sbjct: 588 GLIKNEGVDRGLELFRDICANGHCPDVIAYHVLIKALCKACRTMEADILFNEMVSKGLKP 647
Query: 436 LMPSYINLTNMYLNLGMHDR 455
+ +Y ++ + + G DR
Sbjct: 648 TVATYNSMIDGWCKEGEIDR 667
Score = 35.0 bits (79), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 77/168 (45%), Gaps = 4/168 (2%)
Query: 369 AFVYKMEAYAKIGEFMKSLEIFREMQER-LGSASVPAYHKIIELLCKAEET--ELTESLM 425
AF + + G ++ +F ++E L + Y+ ++E + K+ + EL E+ +
Sbjct: 143 AFGFFIRCLGNAGLVDEASSVFDRVREMGLCVPNAYTYNCLLEAISKSNSSSVELVEARL 202
Query: 426 KEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAG 485
KE + G + + +Y N G +R F+E L + + I I + S G
Sbjct: 203 KEMRDCGFHFDKFTLTPVLQVYCNTGKSERALSVFNEILSRGWLDEHISTILVVSFCKWG 262
Query: 486 NIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLM 533
++KA E+ M ++ I +N ++ +++ ++ KA ++++ M
Sbjct: 263 QVDKAFELI-EMLEERDIRLNYKTYCVLIHGFVKESRIDKAFQLFEKM 309
>sp|Q9M302|PP270_ARATH Pentatricopeptide repeat-containing protein At3g48810
OS=Arabidopsis thaliana GN=At3g48810 PE=2 SV=1
Length = 659
Score = 63.2 bits (152), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 104/226 (46%), Gaps = 16/226 (7%)
Query: 314 ERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYK 373
+ I ++ ++M++ GFE +L+ K V+ A+K + + S+ G A Y
Sbjct: 163 QMIYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAKKLLVEM--SNKGCCPDAVSYT 220
Query: 374 --MEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVET 431
+ + ++G + RE+ ER V Y+ +I LCK + + LM+E VE
Sbjct: 221 TVISSMCEVGLVKEG----RELAERF-EPVVSVYNALINGLCKEHDYKGAFELMREMVEK 275
Query: 432 GMKPLMPSYINLTNMYLNLGMHDRLHLAFS---ECLEK-CRPNRTIYGIYLESLKNAGNI 487
G+ P + SY L N+ N G ++ LAFS + L++ C PN ++ G
Sbjct: 276 GISPNVISYSTLINVLCNSG---QIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTT 332
Query: 488 EKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLM 533
A +++N M + N + N ++ + S G+ VKA ++ M
Sbjct: 333 FDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHM 378
Score = 46.6 bits (109), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 71/365 (19%), Positives = 149/365 (40%), Gaps = 24/365 (6%)
Query: 177 RFD--FALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCL 234
RF+ ++ L + + KE + ++ +++ +G P+ +++ LI ++ G +
Sbjct: 241 RFEPVVSVYNALINGLCKEHDYKGAFELMREMVEKGISPNVISYSTLINVLCNS---GQI 297
Query: 235 DEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQ 294
+ A S +M++ G + P +SL + + L N + G +Q
Sbjct: 298 ELAFSFLTQMLKRGCH-PNIYTLSSLVKGCFLRGTTFDALDLW-------NQMIRGFGLQ 349
Query: 295 KDI--YSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAE 352
++ Y+ L+ NI K +S+ M++ G S++ AK G ++ A
Sbjct: 350 PNVVAYNTLVQGFCSHGNIVKA-VSVFS-HMEEIGCSPNIRTYGSLINGFAKRGSLDGAV 407
Query: 353 KTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELL 412
W ++L S + +EA + +F ++ + M + + SVP ++ I+ L
Sbjct: 408 YIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGL 467
Query: 413 CKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE----KCR 468
C A + E + ++ + P P+ + + L +R+ A+ E
Sbjct: 468 CDAGRLDWAEKVFRQMEQQHRCP--PNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVE 525
Query: 469 PNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEK 528
+ + Y L NAG A ++ M D + + N+I+ AY G +A +
Sbjct: 526 WSSSTYNTLLHGSCNAGLPGIALQLVGKMMVDGK-SPDEITMNMIILAYCKQGKAERAAQ 584
Query: 529 IYDLM 533
+ DL+
Sbjct: 585 MLDLV 589
>sp|Q9ZU27|PPR76_ARATH Pentatricopeptide repeat-containing protein At1g51965,
mitochondrial OS=Arabidopsis thaliana GN=At1g51965 PE=2
SV=1
Length = 650
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 80/377 (21%), Positives = 167/377 (44%), Gaps = 52/377 (13%)
Query: 157 IRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEM 216
+ ++E +V+E M ++H R ++ T + MG+ K + +F+++I +G + +
Sbjct: 248 LAKDEKACQVFEDMKKRHCRRDEYTY-TIMIRTMGRIGKCDEAVGLFNEMITEGLTLNVV 306
Query: 217 TFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHN-SLFRALVSKPGGL---- 271
++ L+ + +D+A +++RM++ G RP+ + SL L+ G L
Sbjct: 307 GYNTLMQVLAKGKM---VDKAIQVFSRMVETGC---RPNEYTYSLLLNLLVAEGQLVRLD 360
Query: 272 -----SKYYLQQ------------------AEFIFHNLLTSGLEIQKDIYSGLI-WLHSY 307
SK Y+ Q A +F ++ + ++ ++D Y ++ L
Sbjct: 361 GVVEISKRYMTQGIYSYLVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMSMLESLCGA 420
Query: 308 QDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPT 367
I E I +L K + + G + +V K + + ++ + P+
Sbjct: 421 GKTI--EAIEMLSK-IHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDG---PS 474
Query: 368 P-AFVYKM--EAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESL 424
P F Y + ++ ++GE +++ IF E++ + +Y+ +I L K + +
Sbjct: 475 PDIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVR 534
Query: 425 MKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFS---ECLEK-CRPNRTIYGIYLES 480
KE E G+ P + +Y L + G +R+ +A+S E L K C+PN Y I L+
Sbjct: 535 FKEMQEKGLNPDVVTYSTLMECF---GKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDC 591
Query: 481 LKNAGNIEKAEEIFNHM 497
L+ G +A ++++ M
Sbjct: 592 LEKNGRTAEAVDLYSKM 608
Score = 38.5 bits (88), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 59/131 (45%), Gaps = 2/131 (1%)
Query: 369 AFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEF 428
+ + +IG+ +++ +F EM + +V Y+ ++++L K + + +
Sbjct: 272 TYTIMIRTMGRIGKCDEAVGLFNEMITEGLTLNVVGYNTLMQVLAKGKMVDKAIQVFSRM 331
Query: 429 VETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIE 488
VETG +P +Y L N+ + G RL + K + IY + +L G++
Sbjct: 332 VETGCRPNEYTYSLLLNLLVAEGQLVRLDGVVE--ISKRYMTQGIYSYLVRTLSKLGHVS 389
Query: 489 KAEEIFNHMHS 499
+A +F M S
Sbjct: 390 EAHRLFCDMWS 400
>sp|Q9LYT2|PP287_ARATH Pentatricopeptide repeat-containing protein At3g59040
OS=Arabidopsis thaliana GN=At3g59040 PE=2 SV=2
Length = 583
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 72/357 (20%), Positives = 152/357 (42%), Gaps = 44/357 (12%)
Query: 166 VYEWMMQQHWYRF---DFALAT----KLADYMGKERKFAKCRDIFDDIINQGRVPSEMTF 218
+ EW+ Q+W+ F DF + KL ++ G ER + + G P+ +++
Sbjct: 125 ILEWLRYQNWWNFSEIDFLMLITAYGKLGNFNGAER-------VLSVLSKMGSTPNVISY 177
Query: 219 HILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQ 278
L+ +Y G + A +I+ RM Q G +P + + + V ++
Sbjct: 178 TALMESYGRG---GKCNNAEAIFRRM-QSSGPEPSAITYQIILKTFVEGDK------FKE 227
Query: 279 AEFIFHNLL---TSGLEIQKDIYSGLIWLHSYQDNIDKER---ISLLKKEMQQAGFEEGK 332
AE +F LL S L+ + +Y +I+++ N +K R S++ K + Q+
Sbjct: 228 AEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARKVFSSMVGKGVPQS------ 281
Query: 333 EVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFRE 392
++ + + E ++ K + ++ SD ++ ++AY + ++L +F E
Sbjct: 282 --TVTYNSLMSFETSYKEVSKIYDQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEE 339
Query: 393 MQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGM 452
M + + AY+ +++ + E +++ K + P + SY + + Y+N
Sbjct: 340 MLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASD 399
Query: 453 HDRLHLAFSEC-LEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMH-----SDQTI 503
+ F ++ PN YG ++ A ++EK E++ M ++QTI
Sbjct: 400 MEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTI 456
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 96/223 (43%), Gaps = 8/223 (3%)
Query: 321 KEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTP-AFVYKME--AY 377
+ MQ +G E +L+ + ++AE+ + LL+ P +Y M Y
Sbjct: 198 RRMQSSGPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMY 257
Query: 378 AKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLM 437
K G + K+ ++F M + S Y+ ++ +E + + + ++P +
Sbjct: 258 KKAGNYEKARKVFSSMVGKGVPQSTVTYNSLMSFETSYKEVS---KIYDQMQRSDIQPDV 314
Query: 438 PSYINLTNMYLNLGMHDRLHLAFSECLEK-CRPNRTIYGIYLESLKNAGNIEKAEEIFNH 496
SY L Y + F E L+ RP Y I L++ +G +E+A+ +F
Sbjct: 315 VSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKS 374
Query: 497 MHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYE 539
M D+ I + S +LSAY+++ D AEK + + + +E
Sbjct: 375 MRRDR-IFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFE 416
Score = 43.5 bits (101), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/236 (20%), Positives = 90/236 (38%), Gaps = 39/236 (16%)
Query: 335 LLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTP-AFVYKMEAYAKIGEFMKSLEIFREM 393
L ++ K G+ AE+ L +L P ++ ME+Y + G+ + IFR M
Sbjct: 142 FLMLITAYGKLGNFNGAERV-LSVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFRRM 200
Query: 394 QERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPS---YINLTNMYLNL 450
Q S Y I++ + ++ + E + + ++ PL P Y + MY
Sbjct: 201 QSSGPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKA 260
Query: 451 GMHDRLHLAFSECLEKCRPNRTI---------------------------------YGIY 477
G +++ FS + K P T+ Y +
Sbjct: 261 GNYEKARKVFSSMVGKGVPQSTVTYNSLMSFETSYKEVSKIYDQMQRSDIQPDVVSYALL 320
Query: 478 LESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLM 533
+++ A E+A +F M D + ++ NI+L A+ SG +A+ ++ M
Sbjct: 321 IKAYGRARREEEALSVFEEML-DAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSM 375
>sp|Q9S7R4|PP125_ARATH Pentatricopeptide repeat-containing protein At1g74900,
mitochondrial OS=Arabidopsis thaliana GN=OTP43 PE=2 SV=1
Length = 482
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 76/328 (23%), Positives = 128/328 (39%), Gaps = 32/328 (9%)
Query: 213 PSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLS 272
PS TF I+ Y SA G D+A ++ M + G +Q S N++ L
Sbjct: 124 PSPKTFAIVAERYASA---GKPDKAVKLFLNMHEHGCFQDLASF-NTILDVLCKSKRVEK 179
Query: 273 KYYLQQA-------EFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQ 325
Y L +A + + +N++ +G + K L L KEM +
Sbjct: 180 AYELFRALRGRFSVDTVTYNVILNGWCLIKRTPKALEVL----------------KEMVE 223
Query: 326 AGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMK 385
G ++L+ + G + A + +L + + D I + + + GE +
Sbjct: 224 RGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKR 283
Query: 386 SLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTN 445
+ +F EM SV Y+ +I++LCK + E + +E V G +P + +Y L
Sbjct: 284 ARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIR 343
Query: 446 MYLNLGMHDRLHLAFSEC-LEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIG 504
+ G R E C PN Y + + +EKA +F M S +
Sbjct: 344 GLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLP 403
Query: 505 VNTRSCNIILSAYL---SSGDFVKAEKI 529
N + NI++S S D V A K+
Sbjct: 404 -NLDTYNILISGMFVRKRSEDMVVAGKL 430
Score = 39.3 bits (90), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 63/143 (44%), Gaps = 10/143 (6%)
Query: 171 MQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPV 230
M++ D T + G + + R++FD++I +G +PS T++ +I
Sbjct: 256 MKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCK--- 312
Query: 231 QGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSG 290
+ ++ A ++ M++ GY+P + +N L R L G S+ E + + G
Sbjct: 313 KDNVENAVVMFEEMVR-RGYEPNVTTYNVLIRGLF-HAGEFSR-----GEELMQRMENEG 365
Query: 291 LEIQKDIYSGLIWLHSYQDNIDK 313
E Y+ +I +S ++K
Sbjct: 366 CEPNFQTYNMMIRYYSECSEVEK 388
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 90/407 (22%), Positives = 163/407 (40%), Gaps = 58/407 (14%)
Query: 234 LDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEI 293
+ EA ++ ++M + YQP N+L L +A + ++ G +
Sbjct: 166 ISEAVALVDQMFVME-YQPNTVTFNTLIHGLFLHNKA------SEAVALIDRMVARGCQP 218
Query: 294 QKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEK 353
Y ++ + +ID +SLLKK M++ E + +++ +V DA
Sbjct: 219 DLFTYGTVVNGLCKRGDIDLA-LSLLKK-MEKGKIEADVVIYTTIIDALCNYKNVNDALN 276
Query: 354 TWLRLLESDN-GIPTPAFVYK--MEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIE 410
+ E DN GI Y + G + + + +M ER + +V + +I+
Sbjct: 277 LFT---EMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALID 333
Query: 411 LLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLA---FSECLEK- 466
K + E L E ++ + P + +Y +L N + MHDRL A F + K
Sbjct: 334 AFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFC---MHDRLDEAKHMFELMISKD 390
Query: 467 CRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKA 526
C PN Y ++ A +E+ E+F M +G NT + N ++ +GD A
Sbjct: 391 CFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVG-NTVTYNTLIQGLFQAGDCDMA 449
Query: 527 EKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIE 586
+KI+ +K V V ++ + +LL GLC
Sbjct: 450 QKIF-------------------------KKMVSDGVPPDIITYS------ILLDGLCKY 478
Query: 587 SDEKRKRHMIRFQFNENSRMHSVLRRYLYDQYHEWLHPSFKVSDGND 633
K ++ ++ F++ + S+M + Y Y+ E + + KV DG D
Sbjct: 479 G--KLEKALVVFEYLQKSKMEPDI--YTYNIMIEGMCKAGKVEDGWD 521
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/310 (22%), Positives = 129/310 (41%), Gaps = 25/310 (8%)
Query: 202 IFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLF 261
+ D+I + P+ +TF LI A++ +G L EA +Y+ MI+ P ++SL
Sbjct: 312 LLSDMIERKINPNVVTFSALIDAFVK---EGKLVEAEKLYDEMIK-RSIDPDIFTYSSLI 367
Query: 262 RALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDK----ERIS 317
L +A+ +F L I KD + ++ ++ K E
Sbjct: 368 NGFCMHD------RLDEAKHMFE------LMISKDCFPNVVTYNTLIKGFCKAKRVEEGM 415
Query: 318 LLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYK--ME 375
L +EM Q G ++++ + GD + A+K + +++ +G+P Y ++
Sbjct: 416 ELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVS--DGVPPDIITYSILLD 473
Query: 376 AYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKP 435
K G+ K+L +F +Q+ + Y+ +IE +CKA + E L G+KP
Sbjct: 474 GLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKP 533
Query: 436 LMPSYINLTNMYLNLGMHDRLHLAFSECLEK-CRPNRTIYGIYLESLKNAGNIEKAEEIF 494
+ Y + + + G+ + F E E PN Y + + G+ + E+
Sbjct: 534 NVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELI 593
Query: 495 NHMHSDQTIG 504
M S +G
Sbjct: 594 KEMRSCGFVG 603
>sp|Q8S9D1|PP395_ARATH Pentatricopeptide repeat-containing protein At5g21222
OS=Arabidopsis thaliana GN=ATC401 PE=2 SV=1
Length = 831
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 75/355 (21%), Positives = 153/355 (43%), Gaps = 18/355 (5%)
Query: 184 TKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNR 243
T L + +++ F + + G P + F+ +I A + G LD+A I+ +
Sbjct: 358 TTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINA---SSESGNLDQAMKIFEK 414
Query: 244 MIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIW 303
M + G +P S N+L + G + K L+++ + +L + +Q + + I
Sbjct: 415 MKE-SGCKPTASTFNTLIKGY----GKIGK--LEESSRLLDMMLRDEM-LQPNDRTCNIL 466
Query: 304 LHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWL-RLLESD 362
+ ++ + E + +MQ G + ++ + A+ G AE + R+L +
Sbjct: 467 VQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNK 526
Query: 363 NGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTE 422
+ Y + G+ ++L F M+E ++ ++ +I+ + +
Sbjct: 527 VKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVG 586
Query: 423 SLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEK-CRPNRTIYGIYLESL 481
++ E G+KP + ++ L N + ++G R +++ LE P+ + I +
Sbjct: 587 EVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGY 646
Query: 482 KNAGNIEKAEEIFNHMHSDQTIGV--NTRSCNIILSAYLSSGDFVKAEKIYDLMC 534
AG EKAE+I N M + GV N I+S + S+G+ KA ++Y MC
Sbjct: 647 ARAGEPEKAEQILNQM---RKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKMC 698
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/203 (20%), Positives = 83/203 (40%), Gaps = 4/203 (1%)
Query: 319 LKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYK---ME 375
KK+ + A FEE KE L+ + K+ + + + G + M
Sbjct: 268 FKKDYKPAVFEEKKEANLADVEAVFKDSEEGRVQLRSFPCVICSGGTTCGDVRSRTKLMN 327
Query: 376 AYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKP 435
+ G ++ IF + E S+ Y ++ L + + SL+ + + G+KP
Sbjct: 328 GLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKP 387
Query: 436 LMPSYINLTNMYLNLGMHDRLHLAFSECLEK-CRPNRTIYGIYLESLKNAGNIEKAEEIF 494
+ + N G D+ F + E C+P + + ++ G +E++ +
Sbjct: 388 DTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLL 447
Query: 495 NHMHSDQTIGVNTRSCNIILSAY 517
+ M D+ + N R+CNI++ A+
Sbjct: 448 DMMLRDEMLQPNDRTCNILVQAW 470
Score = 41.6 bits (96), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 58/294 (19%), Positives = 121/294 (41%), Gaps = 22/294 (7%)
Query: 156 RIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSE 215
+I + E R+ + M++ + + L +RK + +I + + G P
Sbjct: 436 KIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDV 495
Query: 216 MTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYY 275
+TF+ L AY + C+ + +I PR LHN + + V G + Y
Sbjct: 496 VTFNTLAKAYAR------IGSTCTAEDMII------PR-MLHNKV-KPNVRTCGTIVNGY 541
Query: 276 LQQAEF-----IFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEE 330
++ + F+ + G+ +++ LI + + D + + + M++ G +
Sbjct: 542 CEEGKMEEALRFFYRMKELGVHPNLFVFNSLI--KGFLNINDMDGVGEVVDLMEEFGVKP 599
Query: 331 GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIF 390
+++ + GD++ E+ + +LE AF + YA+ GE K+ +I
Sbjct: 600 DVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQIL 659
Query: 391 REMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVE-TGMKPLMPSYINL 443
+M++ +V Y +II C A E + + K+ G+ P + +Y L
Sbjct: 660 NQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKMCGIVGLSPNLTTYETL 713
Score = 38.5 bits (88), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 59/294 (20%), Positives = 121/294 (41%), Gaps = 15/294 (5%)
Query: 213 PSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLS 272
P++ T +IL+ A+ + Q ++EA +I +M Q G +P N+L +A ++ G
Sbjct: 458 PNDRTCNILVQAWCN---QRKIEEAWNIVYKM-QSYGVKPDVVTFNTLAKAY-ARIGSTC 512
Query: 273 KYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGK 332
+ HN +++ ++ + ++ Y + E M++ G
Sbjct: 513 TAEDMIIPRMLHN------KVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNL 566
Query: 333 EVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIP-TPAFVYKMEAYAKIGEFMKSLEIFR 391
V S+++ D+ D + L+E P F M A++ +G+ + EI+
Sbjct: 567 FVFNSLIKGFLNINDM-DGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIYT 625
Query: 392 EMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLG 451
+M E + A+ + + +A E E E ++ + + G++P + Y + + + + G
Sbjct: 626 DMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAG 685
Query: 452 -MHDRLHLAFSEC-LEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTI 503
M + + C + PN T Y + A KAEE+ M +
Sbjct: 686 EMKKAMQVYKKMCGIVGLSPNLTTYETLIWGFGEAKQPWKAEELLKDMEGKNVV 739
>sp|Q9LW84|PP236_ARATH Pentatricopeptide repeat-containing protein At3g16010
OS=Arabidopsis thaliana GN=At3g16010 PE=2 SV=1
Length = 642
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/317 (19%), Positives = 134/317 (42%), Gaps = 16/317 (5%)
Query: 184 TKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNR 243
T+L +GK + + + D++ G P + + L+ + G + + N
Sbjct: 307 TELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLM------NILGKVGRVEELTNV 360
Query: 244 MIQLGGYQPRPSL--HNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGL 301
++G ++ P++ +N++ +AL SK ++ + F + + + YS L
Sbjct: 361 FSEMGMWRCTPTVVSYNTVIKALFE-----SKAHVSEVSSWFDKMKADSVSPSEFTYSIL 415
Query: 302 IWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLES 361
I + + + E+ LL +EM + GF S++ K E A + + L E+
Sbjct: 416 IDGYCKTNRV--EKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKEN 473
Query: 362 DNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELT 421
+ + + ++ + K G+ +++++F EM+ + V AY+ ++ + KA
Sbjct: 474 FGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEA 533
Query: 422 ESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEK-CRPNRTIYGIYLES 480
SL+++ E G + + S+ + N + G+ R F +P+ Y L
Sbjct: 534 NSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGC 593
Query: 481 LKNAGNIEKAEEIFNHM 497
+AG E+A + M
Sbjct: 594 FAHAGMFEEAARMMREM 610
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 75/152 (49%), Gaps = 3/152 (1%)
Query: 377 YAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPL 436
Y K+G+ K+L++F EM+ S +V Y ++I+ L KA + K+ + G+ P
Sbjct: 278 YFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPD 337
Query: 437 MPSYINLTNMYLNLGMHDRLHLAFSEC-LEKCRPNRTIYGIYLESL-KNAGNIEKAEEIF 494
+ NL N+ +G + L FSE + +C P Y +++L ++ ++ + F
Sbjct: 338 VVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWF 397
Query: 495 NHMHSDQTIGVNTRSCNIILSAYLSSGDFVKA 526
+ M +D ++ + + +I++ Y + KA
Sbjct: 398 DKMKAD-SVSPSEFTYSILIDGYCKTNRVEKA 428
Score = 38.5 bits (88), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 70/166 (42%), Gaps = 8/166 (4%)
Query: 337 SVLRVCAKEGDVEDAEKTWLRLLESDNGIP-TPAFVYKMEAYAKIGEFMKSLEIFREMQE 395
SV+ + +EG E + + + + P T + + +Y K+G ++ +F EM++
Sbjct: 202 SVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKD 261
Query: 396 RLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDR 455
+ Y ++ + K + E L +E G P + +Y T + LG R
Sbjct: 262 NCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTY---TELIKGLGKAGR 318
Query: 456 LHLAFSECLEKCRPNRTIYGIYLESLKN----AGNIEKAEEIFNHM 497
+ A+ + R T ++L +L N G +E+ +F+ M
Sbjct: 319 VDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFSEM 364
Score = 38.5 bits (88), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 66/152 (43%), Gaps = 7/152 (4%)
Query: 388 EIFREMQERLGSASVPAYHKIIELLCKA-EETELTESLMKEFVETG---MKPLMPSYINL 443
E++R +QE + + V ++ L KA ++ + F + KP +Y ++
Sbjct: 144 EMYRTIQEVVRNTYVSVSPAVLSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSV 203
Query: 444 TNMYLNLGMHDRLHLAFSE-CLE-KCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ 501
M + G H+++H ++E C E C P+ Y + S + G + A +F+ M D
Sbjct: 204 ILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEM-KDN 262
Query: 502 TIGVNTRSCNIILSAYLSSGDFVKAEKIYDLM 533
+ + +L Y G KA +++ M
Sbjct: 263 CMQPTEKIYTTLLGIYFKVGKVEKALDLFEEM 294
>sp|Q34807|IEND1_WICCA Probable intron-encoded endonuclease 1 OS=Wickerhamomyces
canadensis PE=3 SV=2
Length = 231
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 96/201 (47%), Gaps = 17/201 (8%)
Query: 567 LSSEQRENLIGLLLGGLCIESDEKRKRHMIRFQFNENSRMHSVLRRYLYDQYHEWLHPSF 626
LS Q E LIG +LG + I+ ++ K +++F++ + + ++R ++D+Y + P
Sbjct: 32 LSKIQEETLIGNILGDVYIKKLKRNKHFLLQFEWKNKAYIEHIVR--VFDEYV--ISPPT 87
Query: 627 ----KVSDGNDDIPYKYSTISHPYFCFYADKFWPKGRLVI-PKLIHRWLTPRALAYWFMY 681
K GN I ++ T H F F + +I P L+ ++T R+LAYWFM
Sbjct: 88 LYERKNHLGNKVITWRAQTFEHKAFDKLGYYFMENHKKIIKPDLVLNYITERSLAYWFMD 147
Query: 682 GG------HRTSVGDILLKLK-VSSEGIALVFKTLKAR-SLDCRVKKKGRVFWIGFLGSN 733
G +T ++L + E + ++ L + +L+C +K I +
Sbjct: 148 DGGKWDYNKKTKNKSLVLHTQGFKKEEVEILINDLNIKFNLNCSIKFNKNKPIIYIPNKD 207
Query: 734 STLFWKLIEPYVLDELKEDLL 754
LF+ L+ PY++ E+K LL
Sbjct: 208 YELFYNLVNPYIIPEMKYKLL 228
>sp|O49399|PP321_ARATH Pentatricopeptide repeat-containing protein At4g18840
OS=Arabidopsis thaliana GN=PCMP-E101 PE=3 SV=2
Length = 545
Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 94/205 (45%), Gaps = 22/205 (10%)
Query: 335 LLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYK--MEAYAKIGEFMKSLEIFRE 392
L+SVL CA G + E W+ + +GI F+ ++ Y+K G+ K+LE+FR
Sbjct: 307 LVSVLSACASLGSLSQGE--WVHVYIDKHGIEIEGFLATALVDMYSKCGKIDKALEVFRA 364
Query: 393 MQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGM 452
+R V ++ II L + + E V G KP ++I + + ++GM
Sbjct: 365 TSKR----DVSTWNSIISDLSVHGLGKDALEIFSEMVYEGFKPNGITFIGVLSACNHVGM 420
Query: 453 HDRLHLAFSECLEKCRPNRTI--YGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSC 510
D+ F R TI YG ++ L G IE+AEE+ N + +D+
Sbjct: 421 LDQARKLFEMMSSVYRVEPTIEHYGCMVDLLGRMGKIEEAEELVNEIPADEA-------- 472
Query: 511 NIILSAYLSS----GDFVKAEKIYD 531
+I+L + L + G +AE+I +
Sbjct: 473 SILLESLLGACKRFGQLEQAERIAN 497
>sp|Q9FKC3|PP424_ARATH Pentatricopeptide repeat-containing protein At5g48730,
chloroplastic OS=Arabidopsis thaliana GN=At5g48730 PE=2
SV=2
Length = 508
Score = 60.5 bits (145), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 67/323 (20%), Positives = 129/323 (39%), Gaps = 34/323 (10%)
Query: 161 ETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHI 220
E+ +V+E + +Q WY+ + + KL +GK ++ K ++F ++IN+G V + +
Sbjct: 131 ESAIQVFELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTA 190
Query: 221 LIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAE 280
L+ AY + G D A ++ RM QP ++ L ++ L + + +
Sbjct: 191 LVSAYSRS---GRFDAAFTLLERMKSSHNCQPDVHTYSILIKSF------LQVFAFDKVQ 241
Query: 281 FIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKER--ISLLKKEMQQAGFEEGKE---VL 335
+ ++ G+ Y+ LI D K + + + +Q G ++ K +
Sbjct: 242 DLLSDMRRQGIRPNTITYNTLI------DAYGKAKMFVEMESTLIQMLGEDDCKPDSWTM 295
Query: 336 LSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQE 395
S LR G +E E + + S F +++Y K G + K + MQ+
Sbjct: 296 NSTLRAFGGNGQIEMMENCYEKFQSSGIEPNIRTFNILLDSYGKSGNYKKMSAVMEYMQK 355
Query: 396 RLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHD- 454
S ++ Y+ +I+ +A + + E L + + P + +L Y D
Sbjct: 356 YHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMQSERIFPSCVTLCSLVRAYGRASKADK 415
Query: 455 -------------RLHLAFSECL 464
RL L F CL
Sbjct: 416 IGGVLRFIENSDIRLDLVFFNCL 438
Score = 43.5 bits (101), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/232 (20%), Positives = 91/232 (39%), Gaps = 13/232 (5%)
Query: 314 ERISLLKKEMQQAGFEEGKEVL---------LSVLRVCAKEGDVEDAEKTWLRLLESDNG 364
ERI+ L+ E FE +E L + ++ + K E A + + ++
Sbjct: 123 ERITALRWESAIQVFELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCV 182
Query: 365 IPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLG-SASVPAYHKIIELLCKAEETELTES 423
+ + + AY++ G F + + M+ V Y +I+ + + +
Sbjct: 183 VNHEVYTALVSAYSRSGRFDAAFTLLERMKSSHNCQPDVHTYSILIKSFLQVFAFDKVQD 242
Query: 424 LMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECL--EKCRPNRTIYGIYLESL 481
L+ + G++P +Y L + Y M + + L + C+P+ L +
Sbjct: 243 LLSDMRRQGIRPNTITYNTLIDAYGKAKMFVEMESTLIQMLGEDDCKPDSWTMNSTLRAF 302
Query: 482 KNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLM 533
G IE E + S I N R+ NI+L +Y SG++ K + + M
Sbjct: 303 GGNGQIEMMENCYEKFQSS-GIEPNIRTFNILLDSYGKSGNYKKMSAVMEYM 353
Score = 38.9 bits (89), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 48/230 (20%), Positives = 99/230 (43%), Gaps = 18/230 (7%)
Query: 314 ERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIP-TPAFVY 372
E+ L +EM G EV +++ ++ G + A R+ S N P +
Sbjct: 167 EKAHELFQEMINEGCVVNHEVYTALVSAYSRSGRFDAAFTLLERMKSSHNCQPDVHTYSI 226
Query: 373 KMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEE-TELTESLMKEFVET 431
++++ ++ F K ++ +M+ + + Y+ +I+ KA+ E+ +L++ E
Sbjct: 227 LIKSFLQVFAFDKVQDLLSDMRRQGIRPNTITYNTLIDAYGKAKMFVEMESTLIQMLGED 286
Query: 432 GMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEK-----CRPNRTIYGIYLESLKNAGN 486
KP + + G + ++ + C EK PN + I L+S +GN
Sbjct: 287 DCKP---DSWTMNSTLRAFGGNGQIEM-MENCYEKFQSSGIEPNIRTFNILLDSYGKSGN 342
Query: 487 IEKAEEIFNHM---HSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLM 533
+K + +M H TI + N+++ A+ +GD + E ++ LM
Sbjct: 343 YKKMSAVMEYMQKYHYSWTIV----TYNVVIDAFGRAGDLKQMEYLFRLM 388
>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690
OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
Length = 566
Score = 60.1 bits (144), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 65/302 (21%), Positives = 134/302 (44%), Gaps = 25/302 (8%)
Query: 144 QEDG------TYLAVHCMRIRENET--GFRVYEWMMQQHWYRFDFALATKLADYMGKERK 195
QEDG TY V ++ T F+V++ M ++ + L + +E K
Sbjct: 260 QEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEM-RERGVSCNIVTYNTLIGGLCREMK 318
Query: 196 FAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPS 255
+ + D + + G P+ +T++ LI + G L +A S+ R ++ G P
Sbjct: 319 LNEANKVVDQMKSDGINPNLITYNTLIDGFCGV---GKLGKALSLC-RDLKSRGLSPSLV 374
Query: 256 LHNSLFRALVSK--PGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDK 313
+N L K G +K + E G++ K Y+ LI + DN+
Sbjct: 375 TYNILVSGFCRKGDTSGAAKMVKEMEE--------RGIKPSKVTYTILIDTFARSDNM-- 424
Query: 314 ERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYK 373
E+ L+ M++ G ++ +G + +A + + ++E + +
Sbjct: 425 EKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTM 484
Query: 374 MEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGM 433
+ Y K G ++L++ +EM+E+ + +V +Y +IE+LCK +++ E L+++ +++G+
Sbjct: 485 ILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAERLVEKMIDSGI 544
Query: 434 KP 435
P
Sbjct: 545 DP 546
Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 71/348 (20%), Positives = 141/348 (40%), Gaps = 56/348 (16%)
Query: 218 FHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQ 277
+ ++I +Y+ + L+ + S +N M+ G+ P + N L +V S + Q
Sbjct: 97 YEVIINSYVQSQ---SLNLSISYFNEMVD-NGFVPGSNCFNYLLTFVVG-----SSSFNQ 147
Query: 278 QAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLS 337
F N ++ D+YS I + + + E+ L E+ + GF + +
Sbjct: 148 WWSFFNEN----KSKVVLDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTT 203
Query: 338 VLRVCAKEGDVEDA---------------EKTWLRLLES--DNGIPTPAF-VYK------ 373
++ C K+G++E A E+T+ L+ NG+ F +Y+
Sbjct: 204 LIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDG 263
Query: 374 -----------MEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTE 422
M K G + ++F EM+ER S ++ Y+ +I LC+ +
Sbjct: 264 VFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEAN 323
Query: 423 SLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE-KCR---PNRTIYGIYL 478
++ + G+ P + +Y L + + +G +L A S C + K R P+ Y I +
Sbjct: 324 KVVDQMKSDGINPNLITYNTLIDGFCGVG---KLGKALSLCRDLKSRGLSPSLVTYNILV 380
Query: 479 ESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKA 526
G+ A ++ M ++ I + + I++ + S + KA
Sbjct: 381 SGFCRKGDTSGAAKMVKEME-ERGIKPSKVTYTILIDTFARSDNMEKA 427
Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 73/360 (20%), Positives = 140/360 (38%), Gaps = 57/360 (15%)
Query: 179 DFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEAC 238
+ + T L D K+ + K +D+F ++ G V +E T+ +LI
Sbjct: 197 NVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLI---------------- 240
Query: 239 SIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIY 298
N LF+ V K G Y Q + +F NL T + +
Sbjct: 241 -------------------NGLFKNGVKKQG-FEMYEKMQEDGVFPNLYTYNCVMNQLC- 279
Query: 299 SGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRL 358
+D K+ + EM++ G +++ +E + +A K +
Sbjct: 280 ---------KDGRTKDAFQVFD-EMRERGVSCNIVTYNTLIGGLCREMKLNEANKV-VDQ 328
Query: 359 LESDNGIPTPAFVYK--MEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAE 416
++SD GI Y ++ + +G+ K+L + R+++ R S S+ Y+ ++ C+
Sbjct: 329 MKSD-GINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKG 387
Query: 417 ETELTESLMKEFVETGMKPLMPSYINLTNMYL---NLGMHDRLHLAFSECLEKCRPNRTI 473
+T ++KE E G+KP +Y L + + N+ +L L+ E P+
Sbjct: 388 DTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEEL--GLVPDVHT 445
Query: 474 YGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLM 533
Y + + G + +A +F M ++ N N ++ Y G +A K+ M
Sbjct: 446 YSVLIHGFCIKGQMNEASRLFKSM-VEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEM 504
Score = 38.1 bits (87), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 68/166 (40%), Gaps = 2/166 (1%)
Query: 369 AFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEF 428
+F ++ + GE KS ++ E+ E S +V Y +I+ CK E E + L E
Sbjct: 165 SFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEM 224
Query: 429 VETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEK-CRPNRTIYGIYLESLKNAGNI 487
+ G+ +Y L N G+ + + + E PN Y + L G
Sbjct: 225 GKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRT 284
Query: 488 EKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLM 533
+ A ++F+ M ++ + N + N ++ +A K+ D M
Sbjct: 285 KDAFQVFDEMR-ERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQM 329
>sp|Q9SCP4|PP279_ARATH Pentatricopeptide repeat-containing protein At3g53170
OS=Arabidopsis thaliana GN=At3g53170 PE=2 SV=1
Length = 447
Score = 60.1 bits (144), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 67/298 (22%), Positives = 125/298 (41%), Gaps = 16/298 (5%)
Query: 237 ACSIYNRMIQLGGYQPRPSLHNSLFRAL--VSKPGGLSKYYLQQAEFIFHNLLTSGLEIQ 294
A I+N + + Y+PR + LF+ L +P QA +F +L+ GL+
Sbjct: 77 ALKIFNLLRKQHWYEPRCKTYTKLFKVLGNCKQP--------DQASLLFEVMLSEGLKPT 128
Query: 295 KDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKT 354
D+Y+ LI ++ + +DK S L+ + + ++ C K G + +
Sbjct: 129 IDVYTSLISVYGKSELLDKA-FSTLEYMKSVSDCKPDVFTFTVLISCCCKLGRFDLVKSI 187
Query: 355 WLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGS-ASVPAYHKIIELLC 413
L + G T + ++ Y K G F + + +M E S V + II
Sbjct: 188 VLEMSYLGVGCSTVTYNTIIDGYGKAGMFEEMESVLADMIEDGDSLPDVCTLNSIIGSYG 247
Query: 414 KAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEK--CRPNR 471
ES F G++P + ++ L + GM+ ++ + + +EK
Sbjct: 248 NGRNMRKMESWYSRFQLMGVQPDITTFNILILSFGKAGMYKKM-CSVMDFMEKRFFSLTT 306
Query: 472 TIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKI 529
Y I +E+ AG IEK +++F M Q + N+ + +++AY +G VK + +
Sbjct: 307 VTYNIVIETFGKAGRIEKMDDVFRKMKY-QGVKPNSITYCSLVNAYSKAGLVVKIDSV 363
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/355 (19%), Positives = 147/355 (41%), Gaps = 33/355 (9%)
Query: 157 IREN--ETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPS 214
I+EN ++ +++ + +QHWY TKL +G ++ + +F+ ++++G P+
Sbjct: 69 IKENRWQSALKIFNLLRKQHWYEPRCKTYTKLFKVLGNCKQPDQASLLFEVMLSEGLKPT 128
Query: 215 EMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKY 274
+ LI Y + + LD+A S M + +P F L+S L ++
Sbjct: 129 IDVYTSLISVYGKSEL---LDKAFSTLEYMKSVSDCKP----DVFTFTVLISCCCKLGRF 181
Query: 275 YLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQA---GFEEG 331
L ++ + + L G +Y ID + + +EM+ E+G
Sbjct: 182 DLVKSIVLEMSYLGVGCSTV-----------TYNTIIDGYGKAGMFEEMESVLADMIEDG 230
Query: 332 KEV--LLSVLRVCAKEGDVEDAEK--TW---LRLLESDNGIPTPAFVYKMEAYAKIGEFM 384
+ + ++ + G+ + K +W +L+ I T F + ++ K G +
Sbjct: 231 DSLPDVCTLNSIIGSYGNGRNMRKMESWYSRFQLMGVQPDITT--FNILILSFGKAGMYK 288
Query: 385 KSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLT 444
K + M++R S + Y+ +IE KA E + + ++ G+KP +Y +L
Sbjct: 289 KMCSVMDFMEKRFFSLTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNSITYCSLV 348
Query: 445 NMYLNLGMHDRLHLAFSECLEK-CRPNRTIYGIYLESLKNAGNIEKAEEIFNHMH 498
N Y G+ ++ + + + + + + AG++ +E++ M
Sbjct: 349 NAYSKAGLVVKIDSVLRQIVNSDVVLDTPFFNCIINAYGQAGDLATMKELYIQME 403
Score = 38.9 bits (89), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 53/253 (20%), Positives = 104/253 (41%), Gaps = 23/253 (9%)
Query: 186 LADYMGKERKFAKCRDIFDDIINQG-RVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRM 244
+ D GK F + + D+I G +P T + +I +Y + ++ S Y+R
Sbjct: 206 IIDGYGKAGMFEEMESVLADMIEDGDSLPDVCTLNSIIGSYGNGRNMRKME---SWYSRF 262
Query: 245 IQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFI---FHNLLTSGLEIQKDIY--S 299
QL G QP + N L + G+ K +F+ F +L T I + + +
Sbjct: 263 -QLMGVQPDITTFNILILSF--GKAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETFGKA 319
Query: 300 GLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLL 359
G I E++ + ++M+ G + S++ +K G V + +++
Sbjct: 320 GRI-----------EKMDDVFRKMKYQGVKPNSITYCSLVNAYSKAGLVVKIDSVLRQIV 368
Query: 360 ESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETE 419
SD + TP F + AY + G+ E++ +M+ER + +I+ +
Sbjct: 369 NSDVVLDTPFFNCIINAYGQAGDLATMKELYIQMEERKCKPDKITFATMIKTYTAHGIFD 428
Query: 420 LTESLMKEFVETG 432
+ L K+ + +G
Sbjct: 429 AVQELEKQMISSG 441
Score = 36.2 bits (82), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/138 (18%), Positives = 58/138 (42%), Gaps = 5/138 (3%)
Query: 365 IPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESL 424
+ T + +E + K G K ++FR+M+ + + Y ++ KA +S+
Sbjct: 304 LTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNSITYCSLVNAYSKAGLVVKIDSV 363
Query: 425 MKEFVETGM---KPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESL 481
+++ V + + P IN +L L++ E KC+P++ + +++
Sbjct: 364 LRQIVNSDVVLDTPFFNCIINAYGQAGDLATMKELYIQMEE--RKCKPDKITFATMIKTY 421
Query: 482 KNAGNIEKAEEIFNHMHS 499
G + +E+ M S
Sbjct: 422 TAHGIFDAVQELEKQMIS 439
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 60.1 bits (144), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 95/452 (21%), Positives = 179/452 (39%), Gaps = 51/452 (11%)
Query: 154 CMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVP 213
C R R+ F +++ Y D + L + + E + ++ ++ D ++ G P
Sbjct: 117 CCRCRKLSLAFSAMGKIIKL-GYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKP 175
Query: 214 SEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALV-SKPGGLS 272
+ +T + L+ + G + +A + +RM++ G +QP + + + + S L+
Sbjct: 176 TLITLNALVNGLC---LNGKVSDAVLLIDRMVETG-FQPNEVTYGPVLKVMCKSGQTALA 231
Query: 273 KYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGK 332
L++ E L I I GL S + + L EM+ GF+
Sbjct: 232 MELLRKMEERKIKLDAVKYSI---IIDGLCKDGSLDNAFN------LFNEMEIKGFKADI 282
Query: 333 EVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFRE 392
+ +++R G +D K +++ AF ++ + K G+ ++ E+ +E
Sbjct: 283 IIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKE 342
Query: 393 MQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGM 452
M +R S Y +I+ CK + + ++ V G P + ++ L N Y +
Sbjct: 343 MIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANL 402
Query: 453 -HDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCN 511
D L L L + Y ++ G +E A+E+F M S + + + S
Sbjct: 403 IDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVS-RRVRPDIVSYK 461
Query: 512 IILSAYLSSGD-------FVKAEK--------IYDL----MCLKKYEIESAWMEKLDYVL 552
I+L +G+ F K EK IY++ MC +++ AW D
Sbjct: 462 ILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMC-NASKVDDAW----DLFC 516
Query: 553 SLNRKEVKKPVSLNLSSEQRENLIGLLLGGLC 584
SL K VK V +++GGLC
Sbjct: 517 SLPLKGVKPDV----------KTYNIMIGGLC 538
Score = 57.0 bits (136), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 77/372 (20%), Positives = 145/372 (38%), Gaps = 68/372 (18%)
Query: 232 GCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGL 291
G LD A +++N M ++ G++ ++ +L R F + G
Sbjct: 261 GSLDNAFNLFNEM-EIKGFKADIIIYTTLIRG-----------------FCYAGRWDDGA 302
Query: 292 EIQKD-----IYSGLIWLHSYQDNIDKE----RISLLKKEMQQAGFEEGKEVLLSVLRVC 342
++ +D I ++ + D KE L KEM Q G S++
Sbjct: 303 KLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGF 362
Query: 343 AKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASV 402
KE ++ A ++ G F + Y K LE+FR+M R A
Sbjct: 363 CKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADT 422
Query: 403 PAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSY---------------------- 440
Y+ +I+ C+ + E+ + L +E V ++P + SY
Sbjct: 423 VTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEK 482
Query: 441 INLTNMYLNLGMH--------------DRLHLAFSECLEKCRPNRTIYGIYLESLKNAGN 486
I + M L++G++ D L S L+ +P+ Y I + L G+
Sbjct: 483 IEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGS 542
Query: 487 IEKAEEIFNHMHSDQTIGVNTRSC--NIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAW 544
+ +A+ +F M D G + C NI++ A+L GD K+ K+ + + + ++++
Sbjct: 543 LSEADLLFRKMEED---GHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDAST 599
Query: 545 MEKLDYVLSLNR 556
++ + +LS R
Sbjct: 600 VKMVVDMLSDGR 611
>sp|Q6NKW7|PP164_ARATH Pentatricopeptide repeat-containing protein At2g19280
OS=Arabidopsis thaliana GN=At2g19280 PE=2 SV=2
Length = 693
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 108/251 (43%), Gaps = 14/251 (5%)
Query: 202 IFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNS-L 260
IF +I G +P + + +I Y + G D+A + +++ G P PSL S +
Sbjct: 395 IFQEIFELGLLPDCVCYTTMIDGYCNL---GRTDKAFQYFGALLKSG--NP-PSLTTSTI 448
Query: 261 FRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLK 320
S+ G +S AE +F N+ T GL++ Y+ L +H Y ++ L
Sbjct: 449 LIGACSRFGSIS-----DAESVFRNMKTEGLKLDVVTYNNL--MHGYGKTHQLNKVFELI 501
Query: 321 KEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKI 380
EM+ AG ++ G +++A + L+ T AF + ++K
Sbjct: 502 DEMRSAGISPDVATYNILIHSMVVRGYIDEANEIISELIRRGFVPSTLAFTDVIGGFSKR 561
Query: 381 GEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSY 440
G+F ++ ++ M + V ++ CKA+ E L + ++ G+KP + Y
Sbjct: 562 GDFQEAFILWFYMADLRMKPDVVTCSALLHGYCKAQRMEKAIVLFNKLLDAGLKPDVVLY 621
Query: 441 INLTNMYLNLG 451
L + Y ++G
Sbjct: 622 NTLIHGYCSVG 632
Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/128 (20%), Positives = 58/128 (45%), Gaps = 4/128 (3%)
Query: 374 MEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGM 433
++ + K+G+ +++++ + R ++ Y + +C + ++ +E E G+
Sbjct: 348 IDGFCKVGKPEEAIKLIHSFRLR---PNIFVYSSFLSNICSTGDMLRASTIFQEIFELGL 404
Query: 434 KPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCR-PNRTIYGIYLESLKNAGNIEKAEE 492
P Y + + Y NLG D+ F L+ P+ T I + + G+I AE
Sbjct: 405 LPDCVCYTTMIDGYCNLGRTDKAFQYFGALLKSGNPPSLTTSTILIGACSRFGSISDAES 464
Query: 493 IFNHMHSD 500
+F +M ++
Sbjct: 465 VFRNMKTE 472
Score = 38.9 bits (89), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 83/211 (39%), Gaps = 40/211 (18%)
Query: 148 TYLAVHCMR---IRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFD 204
T L C R I + E+ FR M+ + D L GK + K ++ D
Sbjct: 447 TILIGACSRFGSISDAESVFR----NMKTEGLKLDVVTYNNLMHGYGKTHQLNKVFELID 502
Query: 205 DIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQ-------------LGGYQ 251
++ + G P T++ILI S V+G +DEA I + +I+ +GG+
Sbjct: 503 EMRSAGISPDVATYNILI---HSMVVRGYIDEANEIISELIRRGFVPSTLAFTDVIGGFS 559
Query: 252 PRPSLHNSLF-----RALVSKP----------GGLSKYYLQQAEFIFHNLLTSGLEIQKD 296
R + L KP G +++A +F+ LL +GL+
Sbjct: 560 KRGDFQEAFILWFYMADLRMKPDVVTCSALLHGYCKAQRMEKAIVLFNKLLDAGLKPDVV 619
Query: 297 IYSGLIWLHSYQDNIDKERISLLKKEMQQAG 327
+Y+ LI H Y D E+ L M Q G
Sbjct: 620 LYNTLI--HGYCSVGDIEKACELIGLMVQRG 648
>sp|O80958|PP194_ARATH Pentatricopeptide repeat-containing protein At2g39230,
mitochondrial OS=Arabidopsis thaliana GN=LOJ PE=1 SV=1
Length = 867
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 71/340 (20%), Positives = 137/340 (40%), Gaps = 47/340 (13%)
Query: 231 QGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSG 290
QG +D A S + +M++ G +P +N++ A + A IF +L G
Sbjct: 462 QGKVDAATS-FLKMMEQKGIEPNVVFYNNMMLAHCRMKN------MDLARSIFSEMLEKG 514
Query: 291 LEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVED 350
LE YS I + + N D++ + +M + FE + + +++ K G
Sbjct: 515 LEPNNFTYS--ILIDGFFKNKDEQNAWDVINQMNASNFEANEVIYNTIINGLCKVGQTSK 572
Query: 351 AEKTWLRLL-ESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASV------- 402
A++ L+ E + ++ ++ + K+G+ ++E +REM E S +V
Sbjct: 573 AKEMLQNLIKEKRYSMSCTSYNSIIDGFVKVGDTDSAVETYREMSENGKSPNVVTFTSLI 632
Query: 403 ----------------------------PAYHKIIELLCKAEETELTESLMKEFVETGMK 434
PAY +I+ CK + + +L E E G+
Sbjct: 633 NGFCKSNRMDLALEMTHEMKSMELKLDLPAYGALIDGFCKKNDMKTAYTLFSELPELGLM 692
Query: 435 PLMPSYINLTNMYLNLG-MHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEI 493
P + Y +L + + NLG M + L + + Y ++ L GNI A ++
Sbjct: 693 PNVSVYNSLISGFRNLGKMDAAIDLYKKMVNDGISCDLFTYTTMIDGLLKDGNINLASDL 752
Query: 494 FNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLM 533
++ + D I + ++++ G F+KA K+ + M
Sbjct: 753 YSELL-DLGIVPDEILHMVLVNGLSKKGQFLKASKMLEEM 791
Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 110/252 (43%), Gaps = 25/252 (9%)
Query: 177 RFDFALATKLADYM----GKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQG 232
RF F L + +Y+ + ++ D F ++++ VP F + LS+ V+
Sbjct: 162 RFGFELTPRAFNYLLNAYIRNKRMDYAVDCFGLMVDRKVVP----FVPYVNNVLSSLVRS 217
Query: 233 CL-DEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGL 291
L DEA IYN+M+ +G + L RA L + ++A IF +++ G
Sbjct: 218 NLIDEAKEIYNKMVLIGVAGDNVTTQ-LLMRA------SLRERKPEEAVKIFRRVMSRGA 270
Query: 292 EIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDA 351
E ++S + ++ + LL++ + G +E SV+ KEG++E+A
Sbjct: 271 EPDGLLFSLAVQAACKTPDLVMA-LDLLREMRGKLGVPASQETYTSVIVAFVKEGNMEEA 329
Query: 352 EKTWLRLLESDNGIPTPAFVYK----MEAYAKIGEFMKSLEIFREMQERLGSASVPAYHK 407
+R+++ G P V + Y K E K+L++F M+E + +
Sbjct: 330 ----VRVMDEMVGFGIPMSVIAATSLVNGYCKGNELGKALDLFNRMEEEGLAPDKVMFSV 385
Query: 408 IIELLCKAEETE 419
++E CK E E
Sbjct: 386 MVEWFCKNMEME 397
>sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700,
mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3
SV=1
Length = 602
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 133/308 (43%), Gaps = 27/308 (8%)
Query: 235 DEACSIYNRMIQLGGYQPRPSL--HNSLFRALV-SKPGGLSKYYLQQAEF--IFHNLLTS 289
D+A +++ MI+ +P PSL + F A+ +K L + +Q E I HN+ T
Sbjct: 70 DDAIALFQEMIR---SRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYT- 125
Query: 290 GLEIQKDIYSGLI-WLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDV 348
L I + + +Y S+L K M+ G+E ++++ EG V
Sbjct: 126 -LNIMINCFCRCCKTCFAY---------SVLGKVMK-LGYEPDTTTFNTLIKGLFLEGKV 174
Query: 349 EDAEKTWLRLLESDNGIPTPAFVYK--MEAYAKIGEFMKSLEIFREMQERLGSASVPAYH 406
+A R++E NG Y + + G+ +L++ R+M+ER A V Y
Sbjct: 175 SEAVVLVDRMVE--NGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYS 232
Query: 407 KIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEK 466
II+ LC+ + SL KE G+K + +Y +L G + L + + +
Sbjct: 233 TIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSR 292
Query: 467 -CRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVK 525
PN + + L+ G +++A E++ M + + I N + N ++ Y +
Sbjct: 293 EIVPNVITFNVLLDVFVKEGKLQEANELYKEMIT-RGISPNIITYNTLMDGYCMQNRLSE 351
Query: 526 AEKIYDLM 533
A + DLM
Sbjct: 352 ANNMLDLM 359
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 62/338 (18%), Positives = 127/338 (37%), Gaps = 46/338 (13%)
Query: 232 GCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGL 291
GC+D A S++ M + G + +NSL R L K G + L + +
Sbjct: 242 GCIDAAISLFKEM-ETKGIKSSVVTYNSLVRGL-CKAGKWNDGALLLKDMVSR------- 292
Query: 292 EIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDA 351
EI ++ + + L + + + L KEM G +++ + + +A
Sbjct: 293 EIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEA 352
Query: 352 EKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIEL 411
++ + F ++ Y + +++FR + +R A+ Y +++
Sbjct: 353 NNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQG 412
Query: 412 LCKAEETELTESLMKEFVETGMKPLMPSY----------------------INLTNMYLN 449
C++ + +L E L +E V G+ P + +Y + + M L
Sbjct: 413 FCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLG 472
Query: 450 LGMH--------------DRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFN 495
+ M+ D +L S + +PN Y + + L G++ +A +
Sbjct: 473 IVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLR 532
Query: 496 HMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLM 533
M D N + N ++ A+L GD + K+ + M
Sbjct: 533 KMEEDGN-APNDCTYNTLIRAHLRDGDLTASAKLIEEM 569
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 80/371 (21%), Positives = 163/371 (43%), Gaps = 55/371 (14%)
Query: 202 IFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLF 261
+ D ++ +G P +T+ +++ +G D A ++ N+M Q G +P ++N++
Sbjct: 208 LIDRMVAKGCQPDLVTYGVVVNGLCK---RGDTDLAFNLLNKMEQ-GKLEPGVLIYNTII 263
Query: 262 RALVSKPGGLSKY-YLQQAEFIFHNLLTSGLEIQKDIYSGLI-WLHSYQDNIDKERISLL 319
GL KY ++ A +F + T G+ YS LI L +Y D R L
Sbjct: 264 -------DGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASR---L 313
Query: 320 KKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLES--DNGIPTPAFVY----- 372
+M + +++ KEG + +AEK + +++ D I T + +
Sbjct: 314 LSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCM 373
Query: 373 --KMEAYAKIGEFMKS--------------------------LEIFREMQERLGSASVPA 404
+++ ++ EFM S +E+FREM +R +
Sbjct: 374 HDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVT 433
Query: 405 YHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECL 464
Y+ +I+ L +A + ++ + + KE V G+ P + +Y L + G ++ + F E L
Sbjct: 434 YNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVF-EYL 492
Query: 465 EKCRPNRTI--YGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGD 522
++ + TI Y I +E + AG +E ++F ++ S + + + + N ++S + G
Sbjct: 493 QRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNL-SLKGVKPDVVAYNTMISGFCRKGS 551
Query: 523 FVKAEKIYDLM 533
+A+ ++ M
Sbjct: 552 KEEADALFKEM 562
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 69/330 (20%), Positives = 129/330 (39%), Gaps = 53/330 (16%)
Query: 202 IFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLF 261
+ D+I + P TF LI A++ +G L EA +Y+ M++ P ++SL
Sbjct: 313 LLSDMIERKINPDVFTFSALIDAFVK---EGKLVEAEKLYDEMVKRS-IDPSIVTYSSLI 368
Query: 262 RALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKK 321
F H+ L K ++ ++ H + D + +L+K
Sbjct: 369 NG-----------------FCMHDRLDEA----KQMFEFMVSKHCFPDVVTYN--TLIKG 405
Query: 322 EMQQAGFEEGKEVLLS---------------VLRVCAKEGDVEDAEKTWLRLLESDNGIP 366
+ EEG EV +++ + GD + A++ + ++ +G+P
Sbjct: 406 FCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVS--DGVP 463
Query: 367 TPAFVYK--MEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESL 424
Y ++ K G+ K++ +F +Q ++ Y+ +IE +CKA + E L
Sbjct: 464 PNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDL 523
Query: 425 MKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEK-CRPNRTIYGIYLESLKN 483
G+KP + +Y + + + G + F E E PN Y + +
Sbjct: 524 FCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLR 583
Query: 484 AGNIEKAEEIFNHMHS------DQTIGVNT 507
G+ E + E+ M S TIG+ T
Sbjct: 584 DGDREASAELIKEMRSCGFAGDASTIGLVT 613
Score = 38.5 bits (88), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 72/314 (22%), Positives = 123/314 (39%), Gaps = 59/314 (18%)
Query: 154 CMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVP 213
CM R +E +++E+M+ +H + D L K ++ + ++F ++ +G V
Sbjct: 372 CMHDRLDEAK-QMFEFMVSKHCFP-DVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVG 429
Query: 214 SEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSK 273
+ +T++ILI A G D A I+ M+ G P +N+L L K G L K
Sbjct: 430 NTVTYNILIQGLFQA---GDCDMAQEIFKEMVS-DGVPPNIMTYNTLLDGLC-KNGKLEK 484
Query: 274 YYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKE 333
A +F L S +E Y+ +I EG
Sbjct: 485 -----AMVVFEYLQRSKMEPTIYTYNIMI---------------------------EG-- 510
Query: 334 VLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYK--MEAYAKIGEFMKSLEIFR 391
+C K G VED + L S G+ Y + + + G ++ +F+
Sbjct: 511 -------MC-KAGKVEDGWDLFCNL--SLKGVKPDVVAYNTMISGFCRKGSKEEADALFK 560
Query: 392 EMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLG 451
EM+E + Y+ +I + + E + L+KE G + +TNM
Sbjct: 561 EMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNM----- 615
Query: 452 MHD-RLHLAFSECL 464
+HD RL +F + L
Sbjct: 616 LHDGRLDKSFLDML 629
>sp|Q9SSR4|PPR77_ARATH Pentatricopeptide repeat-containing protein At1g52620
OS=Arabidopsis thaliana GN=At1g52620 PE=2 SV=1
Length = 819
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 96/454 (21%), Positives = 187/454 (41%), Gaps = 75/454 (16%)
Query: 156 RIRENETGFRVYEWMMQQ---HWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQG-R 211
RI++ E G ++++W+ + ++ FA ++ L + + R F + D+ ++ N+ +
Sbjct: 73 RIQDVEIGVKLFDWLSSEKKDEFFSNGFACSSFLK-LLARYRIFNEIEDVLGNLRNENVK 131
Query: 212 VPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVS--KPG 269
+ E H+L AY + G L +A IY+ +++L P NSL LV + G
Sbjct: 132 LTHEALSHVL-HAYAES---GSLSKAVEIYDYVVELYDSVPDVIACNSLLSLLVKSRRLG 187
Query: 270 GLSKYYLQQAE-----------FIFHNLLTSG-LEIQKDIYSGLIWLHSYQDNI------ 311
K Y + + + + G +E+ + + G W NI
Sbjct: 188 DARKVYDEMCDRGDSVDNYSTCILVKGMCNEGKVEVGRKLIEGR-WGKGCIPNIVFYNTI 246
Query: 312 --------DKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESD- 362
D E L+ KE++ GF E +++ KEGD +++ + E
Sbjct: 247 IGGYCKLGDIENAYLVFKELKLKGFMPTLETFGTMINGFCKEGDFVASDRLLSEVKERGL 306
Query: 363 -------NGIPTPAFV--YKMEAYAKIGEFMKS----------LEIFREMQER------- 396
N I + YK++ IG + + + I R +E
Sbjct: 307 RVSVWFLNNIIDAKYRHGYKVDPAESIGWIIANDCKPDVATYNILINRLCKEGKKEVAVG 366
Query: 397 -LGSAS----VP---AYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSY-INLTNMY 447
L AS +P +Y +I+ CK++E ++ L+ + E G KP + +Y I + +
Sbjct: 367 FLDEASKKGLIPNNLSYAPLIQAYCKSKEYDIASKLLLQMAERGCKPDIVTYGILIHGLV 426
Query: 448 LNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNT 507
++ M D +++ P+ IY + + L G A+ +F+ M D+ I +
Sbjct: 427 VSGHMDDAVNMKVKLIDRGVSPDAAIYNMLMSGLCKTGRFLPAKLLFSEML-DRNILPDA 485
Query: 508 RSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIE 541
++ ++ SGDF +A K++ L K +++
Sbjct: 486 YVYATLIDGFIRSGDFDEARKVFSLSVEKGVKVD 519
Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 63/304 (20%), Positives = 130/304 (42%), Gaps = 34/304 (11%)
Query: 209 QGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKP 268
+G P +T+ ILI + V G +D+A ++ ++I G P +++N L L
Sbjct: 409 RGCKPDIVTYGILIHGLV---VSGHMDDAVNMKVKLIDRG-VSPDAAIYNMLMSGLCKTG 464
Query: 269 GGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGF 328
L A+ +F +L + +Y+ LI + D+ R ++
Sbjct: 465 RFLP------AKLLFSEMLDRNILPDAYVYATLIDGFIRSGDFDEAR------KVFSLSV 512
Query: 329 EEGKEVLL----SVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYK--MEAYAKIGE 382
E+G +V + ++++ + G +++A R+ E ++ +P F Y ++ Y K +
Sbjct: 513 EKGVKVDVVHHNAMIKGFCRSGMLDEALACMNRMNE-EHLVPD-KFTYSTIIDGYVKQQD 570
Query: 383 FMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYIN 442
+++IFR M++ +V Y +I C + ++ E + F E ++ L+P+ +
Sbjct: 571 MATAIKIFRYMEKNKCKPNVVTYTSLINGFCCQGDFKMAE---ETFKEMQLRDLVPNVVT 627
Query: 443 LTNMYLNLGMHDRL---HLAFSECL--EKCRPNRTIYGIYLESL--KNAGNIEKAEEIFN 495
T + +L + + E + KC PN + L+ K +G + + N
Sbjct: 628 YTTLIRSLAKESSTLEKAVYYWELMMTNKCVPNEVTFNCLLQGFVKKTSGKVLAEPDGSN 687
Query: 496 HMHS 499
H S
Sbjct: 688 HGQS 691
Score = 35.8 bits (81), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 55/270 (20%), Positives = 106/270 (39%), Gaps = 17/270 (6%)
Query: 272 SKYYLQQAE-FIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEE 330
SK LQ AE +++T G+ I + SG + D+ ++ L+ + G
Sbjct: 400 SKLLLQMAERGCKPDIVTYGILIHGLVVSG------HMDDAVNMKVKLIDR-----GVSP 448
Query: 331 GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYK--MEAYAKIGEFMKSLE 388
+ ++ K G A+ + +L D I A+VY ++ + + G+F ++ +
Sbjct: 449 DAAIYNMLMSGLCKTGRFLPAKLLFSEML--DRNILPDAYVYATLIDGFIRSGDFDEARK 506
Query: 389 IFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYL 448
+F E+ V ++ +I+ C++ + + M E + P +Y + + Y+
Sbjct: 507 VFSLSVEKGVKVDVVHHNAMIKGFCRSGMLDEALACMNRMNEEHLVPDKFTYSTIIDGYV 566
Query: 449 -NLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNT 507
M + + KC+PN Y + G+ + AEE F M +
Sbjct: 567 KQQDMATAIKIFRYMEKNKCKPNVVTYTSLINGFCCQGDFKMAEETFKEMQLRDLVPNVV 626
Query: 508 RSCNIILSAYLSSGDFVKAEKIYDLMCLKK 537
+I S S KA ++LM K
Sbjct: 627 TYTTLIRSLAKESSTLEKAVYYWELMMTNK 656
>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
SV=1
Length = 730
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 82/394 (20%), Positives = 164/394 (41%), Gaps = 36/394 (9%)
Query: 171 MQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPV 230
M +H + + L + K + + + +++ G VP TF+ +I+
Sbjct: 243 MTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDR 302
Query: 231 QGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRAL---------------VSKP------- 268
++EA + NRM+ + G+ P + L L + KP
Sbjct: 303 ---INEAAKMVNRML-IRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEIVIFNT 358
Query: 269 ---GGLSKYYLQQAEFIFHNLLTS-GLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQ 324
G ++ L A+ + +++TS G+ Y+ LI+ + +++ + + +L +M+
Sbjct: 359 LIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGY-WKEGLVGLALEVLH-DMR 416
Query: 325 QAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIP-TPAFVYKMEAYAKIGEF 383
G + ++ K G +++A L + +D P T F + A+ K
Sbjct: 417 NKGCKPNVYSYTILVDGFCKLGKIDEAYNV-LNEMSADGLKPNTVGFNCLISAFCKEHRI 475
Query: 384 MKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINL 443
+++EIFREM + V ++ +I LC+ +E + L+++ + G+ +Y L
Sbjct: 476 PEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTL 535
Query: 444 TNMYLNLGMHDRLHLAFSECLEKCRP-NRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQT 502
N +L G +E + + P + Y ++ L AG ++KA +F M D
Sbjct: 536 INAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGH 595
Query: 503 IGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLK 536
N SCNI+++ SG +A + M L+
Sbjct: 596 APSNI-SCNILINGLCRSGMVEEAVEFQKEMVLR 628
Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 81/400 (20%), Positives = 149/400 (37%), Gaps = 41/400 (10%)
Query: 162 TGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHIL 221
T ++ W Q+ YR F + L +G +F + + ++G V E F +
Sbjct: 93 TSMELFSWTGSQNGYRHSFDVYQVLIGKLGANGEFKTIDRLLIQMKDEGIVFKESLFISI 152
Query: 222 IVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSK-------------- 267
+ Y A G + + M + +P +N + LVS
Sbjct: 153 MRDYDKAGFPG---QTTRLMLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDML 209
Query: 268 ----PGGLSKYYLQQAEFIFHNLLTSGLEIQKD-----------IYSGLIWLHSYQDNID 312
P L + + F N + S L + +D IY LI S + ++
Sbjct: 210 SRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVN 269
Query: 313 KERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVY 372
E + LL +EM G E V+ K + +A K R+L + Y
Sbjct: 270 -EALQLL-EEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGY 327
Query: 373 KMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVET- 431
M KIG + ++F R+ + ++ +I + ++++ + V +
Sbjct: 328 LMNGLCKIGRVDAAKDLFY----RIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSY 383
Query: 432 GMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEK-CRPNRTIYGIYLESLKNAGNIEKA 490
G+ P + +Y +L Y G+ + K C+PN Y I ++ G I++A
Sbjct: 384 GIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEA 443
Query: 491 EEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIY 530
+ N M +D + NT N ++SA+ +A +I+
Sbjct: 444 YNVLNEMSADG-LKPNTVGFNCLISAFCKEHRIPEAVEIF 482
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/300 (20%), Positives = 128/300 (42%), Gaps = 15/300 (5%)
Query: 184 TKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNR 243
T L D K K + ++ +++ G P+ + F+ LI A+ + + EA I+
Sbjct: 428 TILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCK---EHRIPEAVEIFRE 484
Query: 244 MIQLGGYQPRPSLHNSLFRALVSKPGGLSKY-YLQQAEFIFHNLLTSGLEIQKDIYSGLI 302
M + G +P ++ F +L+S GL + ++ A ++ ++++ G+ Y+ LI
Sbjct: 485 MPRKGC---KPDVYT--FNSLIS---GLCEVDEIKHALWLLRDMISEGVVANTVTYNTLI 536
Query: 303 WLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESD 362
+ I + R L EM G + S+++ + G+V+ A + ++L
Sbjct: 537 NAFLRRGEIKEAR--KLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDG 594
Query: 363 NGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTE 422
+ + + + G +++E +EM R + + ++ +I LC+A E
Sbjct: 595 HAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGL 654
Query: 423 SLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKC-RPNRTIYGIYLESL 481
++ ++ G+ P ++ L + G L E +E PN + I L+S+
Sbjct: 655 TMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSILLQSI 714
>sp|Q9SV96|PP358_ARATH Pentatricopeptide repeat-containing protein At4g39620,
chloroplastic OS=Arabidopsis thaliana GN=EMB2453 PE=2
SV=1
Length = 563
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 72/367 (19%), Positives = 138/367 (37%), Gaps = 81/367 (22%)
Query: 166 VYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAY 225
V+ WM +Q WY D + +KL MGK+ + +F ++ N G P ++ LI A+
Sbjct: 119 VFRWMQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSEMKNSGCRPDASVYNALITAH 178
Query: 226 LSAPVQG-CLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFH 284
L + L++ ++M + QP +N L RA + Q +F
Sbjct: 179 LHTRDKAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAFAQSGK------VDQVNALFK 232
Query: 285 NLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAK 344
+L S + D+Y+ V+ K
Sbjct: 233 DLDMS--PVSPDVYT-----------------------------------FNGVMDAYGK 255
Query: 345 EGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPA 404
G +++ E R+ ++ F +++Y K EF K + F+ + ++P
Sbjct: 256 NGMIKEMEAVLTRMRSNECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPT 315
Query: 405 YHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECL 464
++ +I KA + E + K+ + +PS+I M +
Sbjct: 316 FNSMIINYGKARMIDKAEWVFKKMNDMN---YIPSFITYECMIM---------------- 356
Query: 465 EKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHM-HSDQTIGVNTRSCNIILSAYLSSGDF 523
+YG G++ +A EIF + SD+ + +T N +L Y +G +
Sbjct: 357 --------MYGY-------CGSVSRAREIFEEVGESDRVLKAST--LNAMLEVYCRNGLY 399
Query: 524 VKAEKIY 530
++A+K++
Sbjct: 400 IEADKLF 406
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 73/166 (43%), Gaps = 8/166 (4%)
Query: 375 EAYAKIGEFMKSLEIFREMQ-ERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGM 433
E K ++++ LE+FR MQ +R Y K+I ++ K +T + L E +G
Sbjct: 105 EELGKSDKWLQCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSEMKNSGC 164
Query: 434 KPLMPSYINLTNMYLNLGMHD------RLHLAFSECLEKCRPNRTIYGIYLESLKNAGNI 487
+P Y L +L+ R +L + +E+C+PN Y I L + +G +
Sbjct: 165 RPDASVYNALITAHLHTRDKAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAFAQSGKV 224
Query: 488 EKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLM 533
++ +F + + + + N ++ AY +G + E + M
Sbjct: 225 DQVNALFKDLDM-SPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRM 269
Score = 36.2 bits (82), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 73/184 (39%), Gaps = 33/184 (17%)
Query: 186 LADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRM- 244
L D GK+++F K F ++ P+ TF+ +I+ Y A + +D+A ++ +M
Sbjct: 284 LIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARM---IDKAEWVFKKMN 340
Query: 245 --------------IQLGGYQPRPSLHNSLFRAL--------VSKPGGLSKYYLQ----- 277
I + GY S +F + S + + Y +
Sbjct: 341 DMNYIPSFITYECMIMMYGYCGSVSRAREIFEEVGESDRVLKASTLNAMLEVYCRNGLYI 400
Query: 278 QAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLS 337
+A+ +FHN S + D + +Y KE++ +L K+M++ G K L
Sbjct: 401 EADKLFHN--ASAFRVHPDASTYKFLYKAYTKADMKEQVQILMKKMEKDGIVPNKRFFLE 458
Query: 338 VLRV 341
L V
Sbjct: 459 ALEV 462
>sp|O63264|ZBI1_ZYGBI Probable intron-encoded endonuclease I-ZbiI OS=Zygosaccharomyces
bisporus PE=3 SV=1
Length = 239
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 95/202 (47%), Gaps = 19/202 (9%)
Query: 566 NLSSEQRENLIGLLLGGLCIESDEKRKRHMIRFQFNENSRMHSVLRRYLYDQYHEWL--- 622
NL+SEQ E +GLLLG I S + K + I+F++ + + + + + EW+
Sbjct: 29 NLTSEQLEIGVGLLLGDAYIRSRDNGKTNCIQFEWKNKAYIDHICLK-----FDEWVLSP 83
Query: 623 -HPSFKVSD-GNDDIPYKYSTISHPYFCFYADKFWPKGRL-VIPKLIHRWLTPRALAYWF 679
H +++ GN+ I + T H F + F + +I LI ++TP++LAYWF
Sbjct: 84 PHKKMRINHLGNEVITWGAQTFKHEAFNELSKLFIINNKKHIINNLIEDYVTPKSLAYWF 143
Query: 680 MYGGHRTSVG------DILLKLKVSS--EGIALVFKTLKARSLDCRVKKKGRVFWIGFLG 731
M G + I+L + + E +L+ L+C +K I
Sbjct: 144 MDDGGKWDYNKGSMNKSIVLNTQCFTIDEVNSLINGLNTKFKLNCSMKFNKNKPIIYIPH 203
Query: 732 SNSTLFWKLIEPYVLDELKEDL 753
++ ++++LI PY++ E++ L
Sbjct: 204 NSYNIYYELISPYIITEMRYKL 225
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/374 (19%), Positives = 151/374 (40%), Gaps = 31/374 (8%)
Query: 179 DFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEAC 238
D L D + F + + ++G VP + T+ +I + + ++EAC
Sbjct: 461 DVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKR---VEEAC 517
Query: 239 SIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIY 298
+++ + Q G P ++ +L K G + + +L + + N L + L +
Sbjct: 518 DLFDSLEQ-KGVNPNVVMYTALIDGYC-KAGKVDEAHLMLEKMLSKNCLPNSL-----TF 570
Query: 299 SGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRL 358
+ LI H + + +LL+++M + G + ++ K+GD + A + ++
Sbjct: 571 NALI--HGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQM 628
Query: 359 LESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEET 418
L S + ++ Y + G + + ++ +M+E S + Y +I+ +T
Sbjct: 629 LSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQT 688
Query: 419 ELTESLMKEFVETGMKPLMPSYINLTNMYLNL-------------GMHDRLHL-AFSECL 464
++K +TG +P ++++L L + M + + E L
Sbjct: 689 NFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELL 748
Query: 465 EK-----CRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS 519
EK PN Y + + GN+ AE++F+HM ++ I + N +LS
Sbjct: 749 EKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCK 808
Query: 520 SGDFVKAEKIYDLM 533
+A K+ D M
Sbjct: 809 LKKHNEAAKVVDDM 822
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 66/137 (48%), Gaps = 2/137 (1%)
Query: 385 KSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLT 444
+++++F +M++ +V Y +I+ LC +E +L+KE ETG+KP + +Y L
Sbjct: 306 EAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLI 365
Query: 445 NMYLNLGMHDRLHLAFSECLEK-CRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTI 503
+ + ++ + LEK PN Y + G IE A ++ M S + +
Sbjct: 366 DSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMES-RKL 424
Query: 504 GVNTRSCNIILSAYLSS 520
NTR+ N ++ Y S
Sbjct: 425 SPNTRTYNELIKGYCKS 441
Score = 43.5 bits (101), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 1/129 (0%)
Query: 374 MEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGM 433
+ + A+ G + +++ EM E ++ Y+K++ CK E + + VE G+
Sbjct: 190 LNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGL 249
Query: 434 KPLMPSYINLTNMYLNLGMHDRLHLAFSEC-LEKCRPNRTIYGIYLESLKNAGNIEKAEE 492
P +Y +L Y D F+E L+ CR N Y + L A I++A +
Sbjct: 250 DPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMD 309
Query: 493 IFNHMHSDQ 501
+F M D+
Sbjct: 310 LFVKMKDDE 318
Score = 36.2 bits (82), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/214 (20%), Positives = 94/214 (43%), Gaps = 13/214 (6%)
Query: 319 LKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYK--MEA 376
L KEM++ G + ++ + E A + ++LE G+ Y +
Sbjct: 345 LVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLE--KGLMPNVITYNALING 402
Query: 377 YAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPL 436
Y K G ++++ M+ R S + Y+++I+ CK+ ++ + +E + P
Sbjct: 403 YCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKS-NVHKAMGVLNKMLERKVLPD 461
Query: 437 MPSYINLTNMYLNLGMHDRLHLAFSECLEK-CRPNRTIYGIYLESLKNAGNIEKAEEIFN 495
+ +Y +L + G D + S ++ P++ Y ++SL + +E+A ++F+
Sbjct: 462 VVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFD 521
Query: 496 HMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKI 529
+ GVN N+++ L G + KA K+
Sbjct: 522 SLEQK---GVNP---NVVMYTALIDG-YCKAGKV 548
>sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150
OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1
Length = 761
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 81/354 (22%), Positives = 146/354 (41%), Gaps = 25/354 (7%)
Query: 195 KFAKCRDI---FDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQ 251
K K D+ F D+I G P+ T++I+I +G ++ A ++ M + G
Sbjct: 239 KLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCK---EGDVEAARGLFEEM-KFRGLV 294
Query: 252 PRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNI 311
P +NS+ G + + L F + E Y+ LI
Sbjct: 295 PDTVTYNSMIDGF----GKVGR--LDDTVCFFEEMKDMCCEPDVITYNALINCFC---KF 345
Query: 312 DKERISL-LKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAF 370
K I L +EM+ G + +++ KEG ++ A K ++ + G+ +
Sbjct: 346 GKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRV--GLVPNEY 403
Query: 371 VYK--MEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEF 428
Y ++A KIG + + EM + +V Y +I+ LC AE + E L +
Sbjct: 404 TYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKM 463
Query: 429 VETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEK-CRPNRTIYGIYLESLKNAGNI 487
G+ P + SY L + ++ DR +E + +P+ +YG ++ L + I
Sbjct: 464 DTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKI 523
Query: 488 EKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIE 541
E A+ + N M + I N+ ++ AY SG+ + + D M K+ +IE
Sbjct: 524 EAAKVVMNEM-KECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEM--KELDIE 574
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/297 (18%), Positives = 111/297 (37%), Gaps = 46/297 (15%)
Query: 184 TKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNR 243
+ L D KE + + D+ G VP+E T+ LI A G L +A + N
Sbjct: 371 STLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKI---GNLSDAFRLGNE 427
Query: 244 MIQLG----------------------------------GYQPRPSLHNSLFRALVSKPG 269
M+Q+G G P + +N+L V
Sbjct: 428 MLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKN 487
Query: 270 GLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFE 329
+ +A + + L G++ +Y IW + I+ ++ + EM++ G +
Sbjct: 488 ------MDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVM--NEMKECGIK 539
Query: 330 EGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEI 389
+ +++ K G+ + + E D + F ++ K K+++
Sbjct: 540 ANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDY 599
Query: 390 FREMQERLG-SASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTN 445
F + G A+ + +I+ LCK + E +L ++ V+ G+ P +Y +L +
Sbjct: 600 FNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMD 656
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 80/200 (40%), Gaps = 11/200 (5%)
Query: 304 LHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDA----EKTWLRLL 359
LH + + + K+M AG ++ KEGDVE A E+ R L
Sbjct: 234 LHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGL 293
Query: 360 ESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETE 419
D T + ++ + K+G ++ F EM++ V Y+ +I CK +
Sbjct: 294 VPD----TVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLP 349
Query: 420 LTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCR--PNRTIYGIY 477
+ +E G+KP + SY L + + GM + + F + + PN Y
Sbjct: 350 IGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQ-AIKFYVDMRRVGLVPNEYTYTSL 408
Query: 478 LESLKNAGNIEKAEEIFNHM 497
+++ GN+ A + N M
Sbjct: 409 IDANCKIGNLSDAFRLGNEM 428
>sp|O82178|PP186_ARATH Pentatricopeptide repeat-containing protein At2g35130
OS=Arabidopsis thaliana GN=At2g35130 PE=2 SV=1
Length = 591
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 78/372 (20%), Positives = 156/372 (41%), Gaps = 59/372 (15%)
Query: 166 VYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAY 225
V EW++++ ++ D L D G++ ++ + ++ ++ VP+E T+ +LI AY
Sbjct: 141 VCEWILRKSSFQPDVICFNLLIDAYGQKFQYKEAESLYVQLLESRYVPTEDTYALLIKAY 200
Query: 226 LSAPVQGCLDEACSIYNRMIQLGGYQPRP-----SLHNSLFRALVSKPGGLSKYYLQQAE 280
A G ++ A + ++++ + P +++N+ L+ + G ++A
Sbjct: 201 CMA---GLIERAEVV---LVEMQNHHVSPKTIGVTVYNAYIEGLMKRKGNT-----EEAI 249
Query: 281 FIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISL-LKKEMQQAGFEEGKEVLLSVL 339
+F + + + Y+ +I L+ K +S L EM+ + +++
Sbjct: 250 DVFQRMKRDRCKPTTETYNLMINLYG---KASKSYMSWKLYCEMRSHQCKPNICTYTALV 306
Query: 340 RVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYK--MEAYAKIGEFMKSLEIFREMQERL 397
A+EG E AE+ + +L E +G+ +VY ME+Y++ G + EIF MQ
Sbjct: 307 NAFAREGLCEKAEEIFEQLQE--DGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMG 364
Query: 398 GSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLH 457
+Y+ +++ +A E++ +E G+ P M S++ L + Y
Sbjct: 365 CEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAY---------- 414
Query: 458 LAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAY 517
A ++ K E I M S+ + +T N +L+ Y
Sbjct: 415 ------------------------SKARDVTKCEAIVKEM-SENGVEPDTFVLNSMLNLY 449
Query: 518 LSSGDFVKAEKI 529
G F K EKI
Sbjct: 450 GRLGQFTKMEKI 461
Score = 57.4 bits (137), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 68/300 (22%), Positives = 127/300 (42%), Gaps = 29/300 (9%)
Query: 213 PSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLS 272
P+ T+ L+ A+ +G ++A I+ ++ Q G +P ++N+L + S+ G
Sbjct: 297 PNICTYTALVNAFAR---EGLCEKAEEIFEQL-QEDGLEPDVYVYNALMESY-SRAG--- 348
Query: 273 KYYLQQAEFIFHNLLTSGLEIQKDIYS------GLIWLHSYQDNIDKERISLLKKEMQQA 326
Y A IF + G E + Y+ G LHS D E + +EM++
Sbjct: 349 --YPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHS-----DAEAVF---EEMKRL 398
Query: 327 GFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYK--MEAYAKIGEFM 384
G + + +L +K DV E + S+NG+ FV + Y ++G+F
Sbjct: 399 GIAPTMKSHMLLLSAYSKARDVTKCEAIVKEM--SENGVEPDTFVLNSMLNLYGRLGQFT 456
Query: 385 KSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLT 444
K +I EM+ +A + Y+ +I + KA E E L E E +P + ++ +
Sbjct: 457 KMEKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELKEKNFRPDVVTWTSRI 516
Query: 445 NMYLNLGMHDRLHLAFSECLEK-CRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTI 503
Y ++ + F E ++ C P+ + L + + +E+ + MH T+
Sbjct: 517 GAYSRKKLYVKCLEVFEEMIDSGCAPDGGTAKVLLSACSSEEQVEQVTSVLRTMHKGVTV 576
Score = 53.5 bits (127), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 114/279 (40%), Gaps = 12/279 (4%)
Query: 261 FRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLK 320
F L+ G K+ ++AE ++ LL S +D Y+ LI + I++ + L+
Sbjct: 158 FNLLIDAYG--QKFQYKEAESLYVQLLESRYVPTEDTYALLIKAYCMAGLIERAEVVLV- 214
Query: 321 KEMQQAGFEEGKEVLLSVLR-----VCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKME 375
EMQ K + ++V + ++G+ E+A + R+ T + +
Sbjct: 215 -EMQNHHVSP-KTIGVTVYNAYIEGLMKRKGNTEEAIDVFQRMKRDRCKPTTETYNLMIN 272
Query: 376 AYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKP 435
Y K + S +++ EM+ ++ Y ++ + E E + ++ E G++P
Sbjct: 273 LYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEP 332
Query: 436 LMPSYINLTNMYLNLGMHDRLHLAFSECLE-KCRPNRTIYGIYLESLKNAGNIEKAEEIF 494
+ Y L Y G FS C P+R Y I +++ AG AE +F
Sbjct: 333 DVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVF 392
Query: 495 NHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLM 533
M I +S ++LSAY + D K E I M
Sbjct: 393 EEMKR-LGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEM 430
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 90/415 (21%), Positives = 167/415 (40%), Gaps = 78/415 (18%)
Query: 234 LDEACSIYNRMIQLGGYQPRPSLHNSLFRAL-----VSKPGGLSKYYLQ---QAEFIFHN 285
+ +A ++ ++M+++G Y+P +L L S+ L +Q Q + + +
Sbjct: 169 ISDAVALVDQMVEMG-YKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYG 227
Query: 286 LLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKE 345
+ +GL + DI L SLLKK M++ E + +++ K
Sbjct: 228 TVVNGLCKRGDIDLAL---------------SLLKK-MEKGKIEADVVIYNTIIDGLCKY 271
Query: 346 GDVEDAEKTWLRLLESDN-GIPTPAFVYK--MEAYAKIGEFMKSLEIFREMQERLGSASV 402
++DA + E DN GI F Y + G + + + +M ER + +V
Sbjct: 272 KHMDDALNLFT---EMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNV 328
Query: 403 PAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLA--- 459
+ +I+ K + E L E ++ + P + +Y +L N + MHDRL A
Sbjct: 329 VTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFC---MHDRLDEAKHM 385
Query: 460 FSECLEK-CRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYL 518
F + K C PN Y ++ A +E+ E+F M +G NT + ++ +
Sbjct: 386 FELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVG-NTVTYTTLIHGFF 444
Query: 519 SSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLI-- 576
+ D A+ ++ K+ VS+ + N++
Sbjct: 445 QARDCDNAQMVF-----------------------------KQMVSVGV----HPNILTY 471
Query: 577 GLLLGGLCIESDEKRKRHMIRFQFNENSRMHSVLRRYLYDQYHEWLHPSFKVSDG 631
+LL GLC + K + M+ F++ + S M + Y Y+ E + + KV DG
Sbjct: 472 NILLDGLC--KNGKLAKAMVVFEYLQRSTMEPDI--YTYNIMIEGMCKAGKVEDG 522
Score = 53.9 bits (128), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 77/369 (20%), Positives = 149/369 (40%), Gaps = 25/369 (6%)
Query: 171 MQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPV 230
M + Y+ D T L + K ++ + D ++ +G P +T+ ++
Sbjct: 179 MVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCK--- 235
Query: 231 QGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKY-YLQQAEFIFHNLLTS 289
+G +D A S+ +M + G + ++N++ GL KY ++ A +F +
Sbjct: 236 RGDIDLALSLLKKM-EKGKIEADVVIYNTII-------DGLCKYKHMDDALNLFTEMDNK 287
Query: 290 GLEIQKDIYSGLI-WLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDV 348
G+ YS LI L +Y D R L +M + +++ KEG +
Sbjct: 288 GIRPDVFTYSSLISCLCNYGRWSDASR---LLSDMIERKINPNVVTFSALIDAFVKEGKL 344
Query: 349 EDAEKTWLRLLESDNGIPTPAFVYK--MEAYAKIGEFMKSLEIFREMQERLGSASVPAYH 406
+AEK + +++ I F Y + + ++ +F M + +V Y
Sbjct: 345 VEAEKLYDEMIK--RSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYS 402
Query: 407 KIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE- 465
+I+ CKA+ E L +E + G+ +Y L + + D + F + +
Sbjct: 403 TLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSV 462
Query: 466 KCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVK 525
PN Y I L+ L G + KA +F ++ T+ + + NI++ +G K
Sbjct: 463 GVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQR-STMEPDIYTYNIMIEGMCKAG---K 518
Query: 526 AEKIYDLMC 534
E ++L C
Sbjct: 519 VEDGWELFC 527
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 104/268 (38%), Gaps = 12/268 (4%)
Query: 184 TKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNR 243
+ L D KE K + ++D++I + P T+ LI + + LDEA ++
Sbjct: 332 SALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFC---MHDRLDEAKHMFEL 388
Query: 244 MIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIW 303
MI + P +++L + G +++ +F + GL Y+ LI
Sbjct: 389 MISKDCF-PNVVTYSTLIK------GFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLI- 440
Query: 304 LHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDN 363
H + D + ++ K+M G +L K G + A + L S
Sbjct: 441 -HGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTM 499
Query: 364 GIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTES 423
+ +E K G+ E+F + + S +V AY+ +I C+ E +S
Sbjct: 500 EPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADS 559
Query: 424 LMKEFVETGMKPLMPSYINLTNMYLNLG 451
L+K+ E G P +Y L L G
Sbjct: 560 LLKKMKEDGPLPNSGTYNTLIRARLRDG 587
>sp|Q9LN69|PPR50_ARATH Putative pentatricopeptide repeat-containing protein At1g19290
OS=Arabidopsis thaliana GN=At1g19290 PE=3 SV=2
Length = 904
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 100/462 (21%), Positives = 193/462 (41%), Gaps = 40/462 (8%)
Query: 79 SVDFDVGTAGSEMRHL---GEPVVEVIELEELPEQWRRAKLAWLCKELPSHKGGTLVRIL 135
S+DF S +R L E +E+ L +++R A+ CK +V IL
Sbjct: 65 SLDFSDELLNSILRRLRLNPEACLEIFNLASKQQKFRPDYKAY-CK---------MVHIL 114
Query: 136 NAQKKWLRQEDGTYLAVHCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGK--- 192
+ + + Q+ +YL C + N +GF V+ +++ +F+ + + D + K
Sbjct: 115 SRARNY--QQTKSYL---CELVALNHSGFVVWGELVRVFK---EFSFSPTVFDMILKVYA 166
Query: 193 ERKFAK-CRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQ 251
E+ K +FD++ N GR+PS ++ + L+ + +G A +Y++MI ++
Sbjct: 167 EKGLVKNALHVFDNMGNYGRIPSLLSCNSLLSNLVR---KGENFVALHVYDQMIS---FE 220
Query: 252 PRPSLHN-SLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDN 310
P + S+ + G + K + F + GLE+ Y+ LI + Y
Sbjct: 221 VSPDVFTCSIVVNAYCRSGNVDKAMV----FAKETESSLGLELNVVTYNSLI--NGYAMI 274
Query: 311 IDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAF 370
D E ++ + + M + G S+++ K+G +E+AE + L E +
Sbjct: 275 GDVEGMTRVLRLMSERGVSRNVVTYTSLIKGYCKKGLMEEAEHVFELLKEKKLVADQHMY 334
Query: 371 VYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVE 430
M+ Y + G+ ++ + M E + + +I CK+ + E + +
Sbjct: 335 GVLMDGYCRTGQIRDAVRVHDNMIEIGVRTNTTICNSLINGYCKSGQLVEAEQIFSRMND 394
Query: 431 TGMKPLMPSYINLTNMYLNLGMHDR-LHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEK 489
+KP +Y L + Y G D L L C ++ P Y I L+ G
Sbjct: 395 WSLKPDHHTYNTLVDGYCRAGYVDEALKLCDQMCQKEVVPTVMTYNILLKGYSRIGAFHD 454
Query: 490 AEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYD 531
++ M + + + SC+ +L A GDF +A K+++
Sbjct: 455 VLSLWKMMLK-RGVNADEISCSTLLEALFKLGDFNEAMKLWE 495
Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 7/164 (4%)
Query: 374 MEAYAKIGEFMKSLEIFREMQERLG-SASVPAYHKIIELLCKAEETELTESLMKEFVETG 432
+ AY + G K++ +E + LG +V Y+ +I + E +++ E G
Sbjct: 232 VNAYCRSGNVDKAMVFAKETESSLGLELNVVTYNSLINGYAMIGDVEGMTRVLRLMSERG 291
Query: 433 MKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEK-CRPNRTIYGIYLESLKNAGNIEKAE 491
+ + +Y +L Y G+ + F EK ++ +YG+ ++ G I A
Sbjct: 292 VSRNVVTYTSLIKGYCKKGLMEEAEHVFELLKEKKLVADQHMYGVLMDGYCRTGQIRDAV 351
Query: 492 EIFNHMHSDQTIGV--NTRSCNIILSAYLSSGDFVKAEKIYDLM 533
+ ++M IGV NT CN +++ Y SG V+AE+I+ M
Sbjct: 352 RVHDNMIE---IGVRTNTTICNSLINGYCKSGQLVEAEQIFSRM 392
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 299,153,164
Number of Sequences: 539616
Number of extensions: 13113423
Number of successful extensions: 35431
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 198
Number of HSP's that attempted gapping in prelim test: 33595
Number of HSP's gapped (non-prelim): 1214
length of query: 787
length of database: 191,569,459
effective HSP length: 126
effective length of query: 661
effective length of database: 123,577,843
effective search space: 81684954223
effective search space used: 81684954223
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)