Query 003913
Match_columns 787
No_of_seqs 809 out of 4525
Neff 10.1
Searched_HMMs 46136
Date Thu Mar 28 14:15:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003913.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003913hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 8.2E-68 1.8E-72 628.5 43.1 616 87-742 127-833 (857)
2 PLN03218 maturation of RBCL 1; 100.0 2.9E-65 6.3E-70 593.7 51.6 544 115-734 376-929 (1060)
3 PLN03218 maturation of RBCL 1; 100.0 2.5E-64 5.4E-69 585.9 53.4 538 144-754 368-920 (1060)
4 PLN03077 Protein ECB2; Provisi 100.0 6.1E-65 1.3E-69 603.9 40.2 553 89-719 59-626 (857)
5 PLN03081 pentatricopeptide (PP 100.0 2.5E-64 5.4E-69 584.7 41.9 560 114-742 92-671 (697)
6 PLN03081 pentatricopeptide (PP 100.0 1.2E-60 2.6E-65 553.9 38.3 519 145-718 86-610 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 4.9E-27 1.1E-31 285.0 50.7 519 153-710 372-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.2E-25 2.7E-30 272.7 49.0 546 88-667 336-899 (899)
9 KOG4626 O-linked N-acetylgluco 99.9 1.1E-20 2.3E-25 194.6 25.1 446 118-623 57-508 (966)
10 PRK11447 cellulose synthase su 99.9 1.6E-18 3.5E-23 211.7 48.8 393 305-717 277-746 (1157)
11 PRK11447 cellulose synthase su 99.9 1.5E-17 3.2E-22 203.3 48.4 566 108-712 27-700 (1157)
12 PRK11788 tetratricopeptide rep 99.9 1.4E-18 3.1E-23 189.1 35.5 234 304-543 114-354 (389)
13 PRK11788 tetratricopeptide rep 99.8 1.7E-17 3.6E-22 180.7 36.1 305 153-508 44-354 (389)
14 KOG4626 O-linked N-acetylgluco 99.8 1.7E-17 3.7E-22 171.3 29.2 367 148-544 118-489 (966)
15 TIGR00990 3a0801s09 mitochondr 99.8 8.4E-15 1.8E-19 168.2 47.7 368 154-535 137-570 (615)
16 TIGR00990 3a0801s09 mitochondr 99.8 9.4E-16 2E-20 176.0 39.7 400 184-634 131-571 (615)
17 PRK15174 Vi polysaccharide exp 99.8 1.3E-14 2.9E-19 166.0 47.1 327 153-501 51-382 (656)
18 PRK15174 Vi polysaccharide exp 99.8 6.5E-15 1.4E-19 168.5 42.9 329 185-536 47-381 (656)
19 PRK09782 bacteriophage N4 rece 99.7 3.7E-15 7.9E-20 174.2 36.5 478 153-667 87-705 (987)
20 PRK09782 bacteriophage N4 rece 99.7 1.5E-14 3.3E-19 169.0 40.7 470 153-682 191-752 (987)
21 PRK10049 pgaA outer membrane p 99.7 1.7E-14 3.8E-19 168.6 39.5 361 153-535 58-455 (765)
22 PRK10049 pgaA outer membrane p 99.7 2.7E-13 5.9E-18 158.6 46.8 370 142-535 13-421 (765)
23 KOG4422 Uncharacterized conser 99.7 2.9E-13 6.3E-18 134.7 38.3 348 177-540 204-594 (625)
24 PRK14574 hmsH outer membrane p 99.7 1.5E-12 3.1E-17 149.5 41.6 428 153-638 43-517 (822)
25 KOG2002 TPR-containing nuclear 99.6 6.8E-13 1.5E-17 145.2 35.5 510 144-677 161-721 (1018)
26 PRK14574 hmsH outer membrane p 99.6 3.4E-11 7.4E-16 138.4 48.3 365 153-535 111-512 (822)
27 KOG4422 Uncharacterized conser 99.6 1.8E-11 3.8E-16 122.2 36.6 367 153-539 124-554 (625)
28 PF03161 LAGLIDADG_2: LAGLIDAD 99.6 2.8E-14 6E-19 134.5 13.1 162 573-738 3-178 (178)
29 KOG2002 TPR-containing nuclear 99.5 3.9E-11 8.5E-16 131.7 30.8 239 144-396 270-525 (1018)
30 KOG0495 HAT repeat protein [RN 99.5 4E-09 8.7E-14 111.1 41.1 470 153-681 415-891 (913)
31 PRK10747 putative protoheme IX 99.4 8.9E-10 1.9E-14 119.0 36.3 285 231-535 97-389 (398)
32 KOG2076 RNA polymerase III tra 99.4 5.4E-09 1.2E-13 114.6 39.3 365 156-535 151-554 (895)
33 TIGR00540 hemY_coli hemY prote 99.4 2E-09 4.3E-14 117.0 35.5 289 230-535 96-398 (409)
34 KOG1126 DNA-binding cell divis 99.4 8E-12 1.7E-16 132.3 15.6 284 312-637 334-623 (638)
35 KOG2003 TPR repeat-containing 99.4 6.4E-11 1.4E-15 118.8 20.5 448 147-619 199-708 (840)
36 PF13429 TPR_15: Tetratricopep 99.4 4.7E-12 1E-16 130.5 12.8 254 274-535 22-276 (280)
37 PF13429 TPR_15: Tetratricopep 99.4 4E-12 8.8E-17 131.1 12.1 256 304-597 15-272 (280)
38 PRK10747 putative protoheme IX 99.3 1.9E-09 4.2E-14 116.4 32.4 283 193-499 97-389 (398)
39 KOG2076 RNA polymerase III tra 99.3 9.3E-09 2E-13 112.8 36.4 329 188-534 147-510 (895)
40 KOG1155 Anaphase-promoting com 99.3 3.2E-08 7E-13 100.6 37.2 354 153-535 173-535 (559)
41 KOG2003 TPR repeat-containing 99.3 8.7E-09 1.9E-13 103.7 32.8 255 274-535 433-688 (840)
42 KOG0495 HAT repeat protein [RN 99.3 2.4E-08 5.1E-13 105.4 37.3 453 157-668 389-846 (913)
43 KOG1155 Anaphase-promoting com 99.3 2.5E-08 5.4E-13 101.4 36.2 327 177-535 161-494 (559)
44 KOG4318 Bicoid mRNA stability 99.3 1.6E-09 3.6E-14 117.7 29.0 538 130-716 11-598 (1088)
45 KOG1126 DNA-binding cell divis 99.3 6.5E-10 1.4E-14 118.0 25.5 283 232-535 333-619 (638)
46 COG2956 Predicted N-acetylgluc 99.3 1.7E-08 3.7E-13 98.0 30.4 309 216-542 37-353 (389)
47 PF13041 PPR_2: PPR repeat fam 99.3 1.1E-11 2.3E-16 89.8 6.5 49 365-413 1-49 (50)
48 KOG0547 Translocase of outer m 99.3 2.4E-09 5.2E-14 109.2 25.3 392 182-631 117-563 (606)
49 PF13041 PPR_2: PPR repeat fam 99.3 1.5E-11 3.1E-16 89.1 6.7 50 400-449 1-50 (50)
50 TIGR00540 hemY_coli hemY prote 99.2 3.5E-08 7.7E-13 107.3 35.3 218 275-498 168-397 (409)
51 TIGR02521 type_IV_pilW type IV 99.2 6.4E-09 1.4E-13 103.9 27.1 200 332-535 31-231 (234)
52 KOG1173 Anaphase-promoting com 99.2 1E-08 2.2E-13 106.8 27.2 447 142-637 47-521 (611)
53 COG3071 HemY Uncharacterized e 99.2 5.3E-08 1.2E-12 97.7 31.1 251 274-535 98-389 (400)
54 KOG0547 Translocase of outer m 99.2 1.5E-07 3.3E-12 96.4 33.0 232 297-535 326-565 (606)
55 KOG1174 Anaphase-promoting com 99.2 6E-08 1.3E-12 97.1 28.6 399 183-637 100-503 (564)
56 KOG1129 TPR repeat-containing 99.1 1.3E-09 2.7E-14 105.5 15.0 234 371-638 227-462 (478)
57 PRK12370 invasion protein regu 99.1 6.6E-08 1.4E-12 109.3 30.7 253 274-537 275-536 (553)
58 KOG1915 Cell cycle control pro 99.1 6.2E-06 1.4E-10 84.4 40.0 202 331-535 321-535 (677)
59 TIGR02521 type_IV_pilW type IV 99.1 8E-08 1.7E-12 95.9 26.9 194 304-500 38-232 (234)
60 COG3071 HemY Uncharacterized e 99.1 3.9E-08 8.4E-13 98.7 23.3 283 308-630 95-386 (400)
61 KOG1840 Kinesin light chain [C 99.1 1.8E-07 3.9E-12 100.8 29.8 246 289-534 191-477 (508)
62 KOG4318 Bicoid mRNA stability 99.1 1.2E-08 2.5E-13 111.3 20.4 255 239-524 11-288 (1088)
63 KOG1915 Cell cycle control pro 99.1 5.6E-06 1.2E-10 84.7 38.1 412 157-597 86-531 (677)
64 COG2956 Predicted N-acetylgluc 99.1 6.7E-07 1.4E-11 87.2 30.0 204 335-542 72-284 (389)
65 PRK12370 invasion protein regu 99.0 1E-07 2.2E-12 107.8 27.7 215 311-535 275-501 (553)
66 PF12569 NARP1: NMDA receptor- 99.0 2.9E-06 6.3E-11 92.8 36.6 297 149-465 9-333 (517)
67 KOG4162 Predicted calmodulin-b 99.0 1.8E-06 3.9E-11 93.6 32.8 406 176-632 319-781 (799)
68 KOG1129 TPR repeat-containing 99.0 3.4E-08 7.4E-13 95.8 17.7 229 304-544 230-462 (478)
69 PF12569 NARP1: NMDA receptor- 99.0 1.8E-06 3.9E-11 94.4 32.6 295 187-498 11-332 (517)
70 KOG2047 mRNA splicing factor [ 98.9 2.4E-05 5.3E-10 83.2 37.0 483 153-666 147-717 (835)
71 PRK11189 lipoprotein NlpI; Pro 98.9 1.4E-06 3E-11 90.1 27.6 218 310-535 39-264 (296)
72 KOG1840 Kinesin light chain [C 98.8 1.9E-06 4.1E-11 93.1 27.4 244 180-464 199-477 (508)
73 KOG1173 Anaphase-promoting com 98.8 6E-06 1.3E-10 86.7 28.4 268 230-517 256-532 (611)
74 PRK11189 lipoprotein NlpI; Pro 98.8 6.7E-06 1.4E-10 85.1 29.3 229 274-514 40-277 (296)
75 KOG2047 mRNA splicing factor [ 98.8 1.2E-05 2.6E-10 85.5 29.8 480 137-683 72-593 (835)
76 KOG1174 Anaphase-promoting com 98.8 1.6E-05 3.6E-10 80.1 28.9 273 250-544 228-504 (564)
77 KOG4162 Predicted calmodulin-b 98.8 5.2E-06 1.1E-10 90.2 26.9 406 211-667 319-782 (799)
78 cd05804 StaR_like StaR_like; a 98.7 4.9E-05 1.1E-09 81.5 34.4 201 334-535 116-335 (355)
79 KOG1156 N-terminal acetyltrans 98.7 0.00018 3.8E-09 77.1 36.1 362 153-538 50-470 (700)
80 COG3063 PilF Tfp pilus assembl 98.7 1.7E-05 3.7E-10 74.3 23.4 198 334-535 37-235 (250)
81 PF12854 PPR_1: PPR repeat 98.6 3E-08 6.6E-13 64.3 3.7 34 209-245 1-34 (34)
82 cd05804 StaR_like StaR_like; a 98.6 0.00016 3.4E-09 77.6 34.4 308 180-500 6-336 (355)
83 PF12854 PPR_1: PPR repeat 98.6 6.6E-08 1.4E-12 62.7 4.4 32 466-497 2-33 (34)
84 KOG2376 Signal recognition par 98.6 0.00074 1.6E-08 71.8 35.1 87 150-247 52-139 (652)
85 KOG3616 Selective LIM binding 98.6 3.4E-05 7.3E-10 82.8 25.2 285 305-637 740-1027(1636)
86 COG3063 PilF Tfp pilus assembl 98.5 1.2E-05 2.7E-10 75.2 19.2 170 369-543 37-208 (250)
87 KOG4340 Uncharacterized conser 98.5 7.2E-05 1.6E-09 72.3 24.5 154 342-497 154-336 (459)
88 KOG1156 N-terminal acetyltrans 98.5 8.5E-05 1.8E-09 79.5 27.3 441 218-683 11-488 (700)
89 PF04733 Coatomer_E: Coatomer 98.5 3E-06 6.5E-11 86.4 16.3 244 274-535 15-264 (290)
90 PRK04841 transcriptional regul 98.5 0.00059 1.3E-08 83.2 39.3 339 189-536 383-760 (903)
91 PLN02789 farnesyltranstransfer 98.5 0.00019 4E-09 74.3 27.6 240 274-544 34-306 (320)
92 KOG0548 Molecular co-chaperone 98.4 0.00053 1.1E-08 72.2 30.2 369 153-544 11-459 (539)
93 KOG3785 Uncharacterized conser 98.4 0.00095 2E-08 66.3 29.7 349 153-533 66-454 (557)
94 KOG1070 rRNA processing protei 98.4 0.00015 3.3E-09 83.8 26.8 223 297-526 1458-1690(1710)
95 KOG1914 mRNA cleavage and poly 98.4 0.0036 7.8E-08 66.0 33.7 78 177-263 17-95 (656)
96 KOG2376 Signal recognition par 98.4 0.0031 6.6E-08 67.3 33.4 351 153-534 88-518 (652)
97 PF04733 Coatomer_E: Coatomer 98.3 3.3E-05 7.2E-10 78.8 18.6 154 301-465 106-264 (290)
98 KOG0985 Vesicle coat protein c 98.3 0.0013 2.8E-08 73.8 31.2 322 142-532 982-1304(1666)
99 PLN02789 farnesyltranstransfer 98.3 7E-05 1.5E-09 77.5 20.8 206 376-617 46-267 (320)
100 TIGR03302 OM_YfiO outer membra 98.3 9.3E-05 2E-09 74.1 21.1 186 331-535 32-231 (235)
101 KOG3617 WD40 and TPR repeat-co 98.3 0.0021 4.5E-08 70.7 31.6 318 153-534 737-1107(1416)
102 KOG4340 Uncharacterized conser 98.3 0.00047 1E-08 66.9 23.6 333 142-498 8-373 (459)
103 KOG1125 TPR repeat-containing 98.3 2.2E-05 4.7E-10 83.0 15.3 214 343-594 296-519 (579)
104 KOG2053 Mitochondrial inherita 98.2 0.017 3.7E-07 64.9 37.8 226 156-398 21-257 (932)
105 TIGR03302 OM_YfiO outer membra 98.2 0.0002 4.2E-09 71.7 21.1 180 299-500 35-232 (235)
106 KOG0548 Molecular co-chaperone 98.2 3.8E-05 8.3E-10 80.5 15.8 387 271-677 13-462 (539)
107 KOG1128 Uncharacterized conser 98.2 4.8E-05 1E-09 82.5 16.9 210 305-535 406-615 (777)
108 KOG1125 TPR repeat-containing 98.2 6.2E-05 1.4E-09 79.6 17.4 223 305-535 293-526 (579)
109 KOG0985 Vesicle coat protein c 98.2 0.0048 1E-07 69.5 32.3 38 153-192 847-884 (1666)
110 PRK10370 formate-dependent nit 98.2 0.00026 5.6E-09 68.2 20.5 119 380-500 52-173 (198)
111 PRK04841 transcriptional regul 98.2 0.0055 1.2E-07 74.7 37.2 261 274-535 423-719 (903)
112 KOG3785 Uncharacterized conser 98.2 0.0039 8.5E-08 62.1 28.4 414 156-636 34-492 (557)
113 KOG0624 dsRNA-activated protei 98.2 0.00011 2.3E-09 72.6 17.5 307 296-637 37-373 (504)
114 KOG1914 mRNA cleavage and poly 98.2 0.014 3E-07 61.8 34.0 128 155-288 30-165 (656)
115 PRK15359 type III secretion sy 98.2 0.00012 2.5E-09 66.7 17.0 92 408-500 30-121 (144)
116 COG5010 TadD Flp pilus assembl 98.2 0.0004 8.7E-09 66.8 20.4 160 371-534 70-229 (257)
117 PRK10370 formate-dependent nit 98.2 0.00025 5.5E-09 68.2 19.6 147 374-535 23-172 (198)
118 PRK15179 Vi polysaccharide bio 98.2 0.00044 9.5E-09 79.0 24.6 146 365-515 84-230 (694)
119 KOG1127 TPR repeat-containing 98.1 0.001 2.2E-08 74.7 25.6 360 216-628 493-907 (1238)
120 KOG1070 rRNA processing protei 98.1 0.00054 1.2E-08 79.4 24.1 207 329-540 1454-1667(1710)
121 KOG1128 Uncharacterized conser 98.1 5.4E-06 1.2E-10 89.6 7.9 224 406-679 402-630 (777)
122 KOG0624 dsRNA-activated protei 98.1 0.014 2.9E-07 58.2 31.5 303 186-535 44-369 (504)
123 PRK14720 transcript cleavage f 98.1 0.0011 2.3E-08 76.6 25.8 220 214-482 30-268 (906)
124 PRK15359 type III secretion sy 98.1 7.7E-05 1.7E-09 67.8 13.7 107 423-535 14-120 (144)
125 PRK15179 Vi polysaccharide bio 98.1 0.0015 3.3E-08 74.6 26.6 184 328-520 82-268 (694)
126 KOG1127 TPR repeat-containing 98.0 0.005 1.1E-07 69.5 28.4 85 453-544 799-883 (1238)
127 TIGR02552 LcrH_SycD type III s 98.0 0.00014 3E-09 65.6 13.4 98 436-535 16-113 (135)
128 COG5010 TadD Flp pilus assembl 98.0 0.0012 2.6E-08 63.5 19.4 161 336-499 70-230 (257)
129 PRK14720 transcript cleavage f 98.0 0.00036 7.7E-09 80.4 18.8 246 327-623 25-273 (906)
130 TIGR00756 PPR pentatricopeptid 97.9 1.5E-05 3.4E-10 52.3 4.3 33 404-436 2-34 (35)
131 COG4783 Putative Zn-dependent 97.9 0.0062 1.3E-07 63.9 25.0 183 330-537 272-455 (484)
132 KOG3616 Selective LIM binding 97.9 0.0024 5.3E-08 69.1 22.5 171 339-534 739-909 (1636)
133 TIGR00756 PPR pentatricopeptid 97.9 1.7E-05 3.7E-10 52.1 4.4 33 369-401 2-34 (35)
134 KOG3081 Vesicle coat complex C 97.9 0.00092 2E-08 64.2 17.3 150 374-534 115-269 (299)
135 TIGR02552 LcrH_SycD type III s 97.8 0.00066 1.4E-08 61.1 15.1 96 404-500 19-114 (135)
136 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00051 1.1E-08 72.6 15.9 122 407-534 174-295 (395)
137 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00065 1.4E-08 71.8 16.4 123 373-500 175-297 (395)
138 COG4783 Putative Zn-dependent 97.8 0.0014 3E-08 68.5 18.4 147 341-510 315-462 (484)
139 PF13812 PPR_3: Pentatricopept 97.8 3.3E-05 7.1E-10 50.4 4.2 31 369-399 3-33 (34)
140 PF13812 PPR_3: Pentatricopept 97.8 3.8E-05 8.3E-10 50.1 4.1 33 403-435 2-34 (34)
141 KOG3617 WD40 and TPR repeat-co 97.8 0.0063 1.4E-07 67.1 22.8 257 178-497 724-993 (1416)
142 KOG3060 Uncharacterized conser 97.7 0.034 7.5E-07 53.4 24.0 188 310-500 25-220 (289)
143 KOG3081 Vesicle coat complex C 97.7 0.0098 2.1E-07 57.4 20.2 172 318-499 94-270 (299)
144 PF01535 PPR: PPR repeat; Int 97.6 5.5E-05 1.2E-09 48.1 3.3 29 509-537 2-30 (31)
145 KOG3060 Uncharacterized conser 97.6 0.05 1.1E-06 52.3 23.8 189 345-542 25-222 (289)
146 PF09976 TPR_21: Tetratricopep 97.6 0.0041 9E-08 56.7 16.7 123 405-533 15-144 (145)
147 cd00189 TPR Tetratricopeptide 97.6 0.00067 1.5E-08 56.0 10.8 94 440-535 3-96 (100)
148 PF05843 Suf: Suppressor of fo 97.6 0.0012 2.6E-08 67.5 13.9 130 403-535 2-135 (280)
149 PF01535 PPR: PPR repeat; Int 97.5 9E-05 2E-09 47.0 3.3 28 369-396 2-29 (31)
150 PF10037 MRP-S27: Mitochondria 97.5 0.0013 2.8E-08 69.9 13.1 124 327-450 61-186 (429)
151 cd00189 TPR Tetratricopeptide 97.5 0.0021 4.7E-08 52.8 11.8 94 406-500 4-97 (100)
152 PF09976 TPR_21: Tetratricopep 97.4 0.0069 1.5E-07 55.2 15.5 86 340-427 56-143 (145)
153 PF08579 RPM2: Mitochondrial r 97.4 0.0023 5E-08 53.2 10.3 75 339-413 32-115 (120)
154 PF08579 RPM2: Mitochondrial r 97.4 0.0037 8E-08 52.0 11.4 78 372-449 30-116 (120)
155 TIGR02795 tol_pal_ybgF tol-pal 97.4 0.0036 7.9E-08 54.6 12.6 97 439-535 4-104 (119)
156 PF10037 MRP-S27: Mitochondria 97.3 0.0027 5.8E-08 67.5 13.0 120 400-520 64-186 (429)
157 KOG2053 Mitochondrial inherita 97.3 0.52 1.1E-05 53.5 43.2 384 144-550 40-514 (932)
158 PF06239 ECSIT: Evolutionarily 97.3 0.0029 6.3E-08 59.5 11.0 105 329-452 44-153 (228)
159 TIGR02795 tol_pal_ybgF tol-pal 97.3 0.01 2.2E-07 51.8 14.2 95 406-500 6-105 (119)
160 PF06239 ECSIT: Evolutionarily 97.2 0.0053 1.2E-07 57.7 11.3 103 365-486 45-153 (228)
161 PRK02603 photosystem I assembl 97.1 0.018 3.8E-07 54.3 15.2 85 369-454 37-123 (172)
162 KOG0553 TPR repeat-containing 97.1 0.0016 3.5E-08 63.9 8.0 93 445-543 89-181 (304)
163 PLN03088 SGT1, suppressor of 97.1 0.011 2.4E-07 62.8 15.1 87 447-535 12-98 (356)
164 PLN03088 SGT1, suppressor of 97.1 0.0048 1E-07 65.5 12.2 102 408-513 8-109 (356)
165 PRK15363 pathogenicity island 97.1 0.021 4.4E-07 51.5 13.7 97 438-536 36-132 (157)
166 PF12895 Apc3: Anaphase-promot 97.0 0.0013 2.9E-08 53.4 5.7 80 450-532 2-83 (84)
167 PF12895 Apc3: Anaphase-promot 96.9 0.0022 4.7E-08 52.1 6.2 80 416-496 3-83 (84)
168 PRK10153 DNA-binding transcrip 96.9 0.048 1E-06 60.6 18.1 66 467-535 416-481 (517)
169 KOG0553 TPR repeat-containing 96.9 0.016 3.4E-07 57.3 12.5 100 409-512 88-187 (304)
170 PF05843 Suf: Suppressor of fo 96.9 0.023 5E-07 58.1 14.5 130 369-500 3-136 (280)
171 PF13414 TPR_11: TPR repeat; P 96.9 0.0035 7.6E-08 48.6 6.7 64 470-535 2-66 (69)
172 PF12688 TPR_5: Tetratrico pep 96.9 0.05 1.1E-06 47.2 14.2 90 410-499 9-103 (120)
173 PRK02603 photosystem I assembl 96.8 0.044 9.5E-07 51.6 15.1 86 404-489 37-124 (172)
174 PF14559 TPR_19: Tetratricopep 96.8 0.0055 1.2E-07 47.3 7.5 62 449-513 3-64 (68)
175 PRK15363 pathogenicity island 96.8 0.031 6.7E-07 50.3 12.5 88 411-499 44-131 (157)
176 PF14938 SNAP: Soluble NSF att 96.8 0.23 4.9E-06 51.0 20.8 167 338-535 41-224 (282)
177 PF13432 TPR_16: Tetratricopep 96.7 0.0056 1.2E-07 46.8 6.5 57 477-535 3-59 (65)
178 CHL00033 ycf3 photosystem I as 96.7 0.043 9.2E-07 51.4 13.7 94 437-532 35-138 (168)
179 CHL00033 ycf3 photosystem I as 96.7 0.036 7.8E-07 51.9 12.9 78 405-482 38-117 (168)
180 PF13432 TPR_16: Tetratricopep 96.6 0.0092 2E-07 45.6 6.8 59 443-501 3-61 (65)
181 PF14938 SNAP: Soluble NSF att 96.5 0.28 6.1E-06 50.3 19.7 240 236-535 2-265 (282)
182 PRK10153 DNA-binding transcrip 96.5 0.19 4.2E-06 55.9 19.5 142 363-510 333-489 (517)
183 PRK10866 outer membrane biogen 96.5 0.49 1.1E-05 47.1 20.2 57 442-498 180-239 (243)
184 KOG0550 Molecular chaperone (D 96.4 0.016 3.4E-07 59.4 9.2 166 435-633 166-349 (486)
185 PF13414 TPR_11: TPR repeat; P 96.4 0.015 3.3E-07 45.0 7.0 64 437-500 3-67 (69)
186 KOG2796 Uncharacterized conser 96.4 1.1 2.4E-05 43.5 20.5 143 368-513 178-325 (366)
187 PRK10866 outer membrane biogen 96.3 1.3 2.9E-05 44.1 22.2 180 338-535 38-240 (243)
188 PF12688 TPR_5: Tetratrico pep 96.3 0.19 4.2E-06 43.5 13.9 87 375-463 9-101 (120)
189 COG4700 Uncharacterized protei 96.2 0.98 2.1E-05 41.5 18.4 125 400-527 87-213 (251)
190 COG4700 Uncharacterized protei 96.2 0.9 2E-05 41.8 17.8 133 329-465 86-221 (251)
191 PF14559 TPR_19: Tetratricopep 96.2 0.018 3.9E-07 44.3 6.5 52 344-396 3-54 (68)
192 KOG1130 Predicted G-alpha GTPa 96.1 0.0012 2.7E-08 66.9 -0.4 127 573-708 195-340 (639)
193 PF03704 BTAD: Bacterial trans 96.1 0.055 1.2E-06 49.3 10.2 71 472-544 63-138 (146)
194 COG4235 Cytochrome c biogenesi 96.0 0.33 7.1E-06 48.5 15.5 99 401-500 155-256 (287)
195 COG4235 Cytochrome c biogenesi 95.9 0.32 6.8E-06 48.6 15.0 101 434-536 153-256 (287)
196 PRK10803 tol-pal system protei 95.7 0.18 3.8E-06 50.8 13.0 97 439-535 145-245 (263)
197 PF13424 TPR_12: Tetratricopep 95.7 0.039 8.4E-07 43.9 6.8 62 473-534 7-73 (78)
198 PF13525 YfiO: Outer membrane 95.7 1.1 2.3E-05 43.5 17.8 47 477-526 147-197 (203)
199 PF13170 DUF4003: Protein of u 95.6 0.63 1.4E-05 47.7 16.6 139 196-338 78-223 (297)
200 KOG0550 Molecular chaperone (D 95.6 0.93 2E-05 47.0 17.1 179 330-537 166-351 (486)
201 KOG1920 IkappaB kinase complex 95.6 4 8.8E-05 48.2 24.0 191 305-534 859-1053(1265)
202 PF13525 YfiO: Outer membrane 95.5 1.1 2.4E-05 43.3 17.4 48 443-490 147-197 (203)
203 PF09205 DUF1955: Domain of un 95.5 0.98 2.1E-05 39.0 14.2 67 470-538 85-151 (161)
204 PRK10803 tol-pal system protei 95.5 0.22 4.8E-06 50.1 12.5 86 413-500 154-246 (263)
205 PF13371 TPR_9: Tetratricopept 95.4 0.085 1.8E-06 41.2 7.7 54 447-500 5-58 (73)
206 PF12921 ATP13: Mitochondrial 95.3 0.23 5.1E-06 43.5 10.6 48 468-515 49-96 (126)
207 COG0457 NrfG FOG: TPR repeat [ 95.3 3 6.6E-05 40.4 27.4 200 332-535 59-264 (291)
208 KOG2041 WD40 repeat protein [G 95.3 0.9 1.9E-05 50.0 16.7 237 212-499 689-951 (1189)
209 PF04184 ST7: ST7 protein; In 95.2 1.4 3.1E-05 47.1 17.6 165 218-409 172-338 (539)
210 PF13371 TPR_9: Tetratricopept 95.1 0.12 2.7E-06 40.2 7.8 57 478-536 2-58 (73)
211 KOG2796 Uncharacterized conser 95.1 0.51 1.1E-05 45.8 12.9 142 333-476 178-324 (366)
212 KOG1538 Uncharacterized conser 95.0 2.7 5.9E-05 46.1 19.2 93 180-285 556-657 (1081)
213 PF13424 TPR_12: Tetratricopep 95.0 0.14 3E-06 40.7 7.7 62 438-499 6-74 (78)
214 PRK15331 chaperone protein Sic 94.8 0.71 1.5E-05 42.0 12.5 90 444-535 44-133 (165)
215 smart00299 CLH Clathrin heavy 94.7 2.1 4.6E-05 38.4 15.7 43 337-380 12-54 (140)
216 PF03704 BTAD: Bacterial trans 94.6 0.76 1.7E-05 41.7 12.8 72 438-510 63-139 (146)
217 PF12921 ATP13: Mitochondrial 94.6 0.35 7.6E-06 42.4 9.8 85 179-266 1-100 (126)
218 PF09205 DUF1955: Domain of un 94.6 0.82 1.8E-05 39.5 11.3 137 274-434 16-152 (161)
219 PF04840 Vps16_C: Vps16, C-ter 94.5 7.1 0.00015 40.6 27.2 104 335-458 180-283 (319)
220 PF07079 DUF1347: Protein of u 94.5 7.9 0.00017 41.0 36.7 391 149-559 84-543 (549)
221 PF13281 DUF4071: Domain of un 94.4 4.9 0.00011 42.3 19.3 79 334-412 143-227 (374)
222 PLN03098 LPA1 LOW PSII ACCUMUL 94.3 0.51 1.1E-05 50.1 11.9 63 437-499 75-140 (453)
223 COG5107 RNA14 Pre-mRNA 3'-end 94.3 1.5 3.2E-05 46.0 14.6 132 401-535 396-530 (660)
224 smart00299 CLH Clathrin heavy 94.1 3.2 7E-05 37.2 15.5 126 371-519 11-137 (140)
225 PLN03098 LPA1 LOW PSII ACCUMUL 94.1 0.28 6E-06 52.1 9.3 66 468-536 72-141 (453)
226 KOG1538 Uncharacterized conser 94.0 4.2 9.2E-05 44.6 17.9 204 309-535 612-845 (1081)
227 COG5107 RNA14 Pre-mRNA 3'-end 94.0 9.8 0.00021 40.2 32.2 176 344-535 314-494 (660)
228 KOG3941 Intermediate in Toll s 93.9 0.4 8.7E-06 46.9 9.4 116 331-465 66-187 (406)
229 KOG0543 FKBP-type peptidyl-pro 93.9 1.1 2.3E-05 46.7 12.9 96 438-535 258-354 (397)
230 KOG1130 Predicted G-alpha GTPa 93.9 4.2 9.2E-05 42.2 16.8 134 404-537 197-345 (639)
231 KOG3941 Intermediate in Toll s 93.8 0.88 1.9E-05 44.6 11.4 115 366-499 66-187 (406)
232 PF13281 DUF4071: Domain of un 93.8 10 0.00022 40.0 21.7 70 230-302 153-224 (374)
233 PF07079 DUF1347: Protein of u 93.7 11 0.00024 40.0 25.5 45 336-380 132-180 (549)
234 PF04840 Vps16_C: Vps16, C-ter 93.7 10 0.00022 39.4 25.8 102 373-493 183-284 (319)
235 KOG1464 COP9 signalosome, subu 93.7 7.7 0.00017 38.0 20.2 153 441-595 149-325 (440)
236 KOG0543 FKBP-type peptidyl-pro 93.6 1.1 2.4E-05 46.6 12.4 127 373-500 214-355 (397)
237 PRK15331 chaperone protein Sic 93.6 2.2 4.8E-05 38.9 12.9 85 344-430 49-133 (165)
238 PF13170 DUF4003: Protein of u 93.5 2.6 5.7E-05 43.2 15.1 96 234-330 78-176 (297)
239 COG3118 Thioredoxin domain-con 93.4 8.7 0.00019 38.5 17.7 142 340-485 142-286 (304)
240 PF08631 SPO22: Meiosis protei 93.1 11 0.00025 38.4 27.9 102 333-437 85-192 (278)
241 PF04053 Coatomer_WDAD: Coatom 93.1 2.6 5.6E-05 46.0 15.1 133 367-532 295-427 (443)
242 KOG1585 Protein required for f 92.9 9.5 0.00021 37.0 17.6 201 305-531 39-251 (308)
243 PF10300 DUF3808: Protein of u 92.9 7.1 0.00015 43.2 18.6 162 335-498 191-374 (468)
244 PF10300 DUF3808: Protein of u 92.8 5.8 0.00013 43.9 17.7 113 162-287 175-294 (468)
245 PF13431 TPR_17: Tetratricopep 92.6 0.036 7.7E-07 35.8 0.1 28 598-625 6-33 (34)
246 KOG2610 Uncharacterized conser 92.0 5.5 0.00012 40.3 14.1 153 380-534 116-274 (491)
247 KOG4555 TPR repeat-containing 91.9 2.6 5.6E-05 36.4 10.3 91 446-537 52-145 (175)
248 COG0457 NrfG FOG: TPR repeat [ 91.8 13 0.00027 35.8 27.3 223 275-501 38-266 (291)
249 PRK11906 transcriptional regul 91.7 16 0.00035 39.3 18.3 150 383-534 274-434 (458)
250 COG1729 Uncharacterized protei 91.7 2.5 5.4E-05 41.8 11.6 86 415-500 154-244 (262)
251 COG3629 DnrI DNA-binding trans 91.5 1.8 3.9E-05 43.4 10.6 79 471-551 153-236 (280)
252 PF13428 TPR_14: Tetratricopep 90.9 0.68 1.5E-05 31.8 5.1 28 473-500 3-30 (44)
253 PF04184 ST7: ST7 protein; In 90.9 26 0.00056 37.9 18.6 87 434-521 256-345 (539)
254 KOG2280 Vacuolar assembly/sort 90.8 23 0.00049 40.2 18.7 330 153-533 446-796 (829)
255 PF04053 Coatomer_WDAD: Coatom 90.5 4.1 8.9E-05 44.4 13.1 134 332-497 295-428 (443)
256 PF13428 TPR_14: Tetratricopep 90.4 1 2.2E-05 31.0 5.6 40 439-478 3-42 (44)
257 COG4105 ComL DNA uptake lipopr 90.4 19 0.00042 35.4 20.4 43 335-377 74-116 (254)
258 PRK11906 transcriptional regul 90.1 9.3 0.0002 41.0 14.8 121 417-543 273-404 (458)
259 KOG4555 TPR repeat-containing 90.0 6.5 0.00014 34.1 10.9 87 413-501 54-145 (175)
260 COG3898 Uncharacterized membra 89.7 28 0.00061 36.3 31.5 297 217-536 84-392 (531)
261 COG3629 DnrI DNA-binding trans 89.3 3.7 8.1E-05 41.2 10.7 78 438-516 154-236 (280)
262 COG1729 Uncharacterized protei 89.0 4.5 9.7E-05 40.1 10.7 102 439-542 144-249 (262)
263 COG3118 Thioredoxin domain-con 88.7 29 0.00062 35.0 17.1 146 374-521 141-286 (304)
264 PF13512 TPR_18: Tetratricopep 88.2 9.2 0.0002 34.1 11.2 71 307-378 20-93 (142)
265 PF13512 TPR_18: Tetratricopep 87.8 14 0.0003 33.0 12.0 53 449-501 22-77 (142)
266 PF13176 TPR_7: Tetratricopept 87.6 1.2 2.6E-05 29.0 4.1 26 509-534 1-26 (36)
267 PF13431 TPR_17: Tetratricopep 87.1 0.79 1.7E-05 29.5 3.0 24 468-491 10-33 (34)
268 PF07035 Mic1: Colon cancer-as 87.1 25 0.00054 32.5 15.9 135 387-535 14-148 (167)
269 PF10602 RPN7: 26S proteasome 86.6 9.4 0.0002 35.9 11.1 63 368-430 37-101 (177)
270 PF13176 TPR_7: Tetratricopept 86.3 1.4 3.1E-05 28.6 4.0 26 473-498 1-26 (36)
271 PF00515 TPR_1: Tetratricopept 86.3 1.5 3.2E-05 28.0 4.0 28 508-535 2-29 (34)
272 PF10602 RPN7: 26S proteasome 86.0 14 0.0003 34.8 11.9 97 403-499 37-141 (177)
273 KOG1550 Extracellular protein 85.8 69 0.0015 36.4 22.5 181 275-465 227-425 (552)
274 COG4105 ComL DNA uptake lipopr 85.4 40 0.00087 33.3 19.6 171 342-535 44-232 (254)
275 KOG1941 Acetylcholine receptor 85.2 50 0.0011 34.2 16.0 202 333-534 44-273 (518)
276 PF14528 LAGLIDADG_3: LAGLIDAD 85.0 2.9 6.3E-05 32.9 5.9 61 680-741 9-76 (77)
277 cd00923 Cyt_c_Oxidase_Va Cytoc 84.9 5.9 0.00013 32.3 7.3 61 419-479 24-84 (103)
278 PF04097 Nic96: Nup93/Nic96; 84.6 52 0.0011 37.9 18.0 217 309-534 270-532 (613)
279 KOG1941 Acetylcholine receptor 84.0 28 0.00061 35.9 13.4 188 346-535 20-234 (518)
280 KOG4570 Uncharacterized conser 83.6 9.7 0.00021 38.3 9.8 99 365-465 62-163 (418)
281 KOG2280 Vacuolar assembly/sort 83.5 89 0.0019 35.7 27.9 310 184-534 441-771 (829)
282 PF07035 Mic1: Colon cancer-as 83.1 39 0.00084 31.2 14.4 131 318-462 15-145 (167)
283 KOG4234 TPR repeat-containing 82.8 25 0.00054 33.1 11.5 94 445-544 103-201 (271)
284 KOG1550 Extracellular protein 82.4 95 0.0021 35.3 27.3 191 160-363 228-428 (552)
285 PF09613 HrpB1_HrpK: Bacterial 82.4 39 0.00085 30.8 13.8 93 447-544 20-112 (160)
286 KOG1258 mRNA processing protei 81.5 94 0.002 34.6 28.6 83 160-247 61-143 (577)
287 KOG4570 Uncharacterized conser 81.4 13 0.00028 37.5 9.7 103 176-290 60-165 (418)
288 PF02284 COX5A: Cytochrome c o 80.8 18 0.0004 29.9 8.8 60 420-479 28-87 (108)
289 KOG4648 Uncharacterized conser 80.6 4.3 9.3E-05 41.1 6.2 81 445-534 105-185 (536)
290 PF07719 TPR_2: Tetratricopept 80.4 3.5 7.6E-05 26.0 4.0 27 509-535 3-29 (34)
291 KOG1586 Protein required for f 80.4 47 0.001 32.3 12.6 19 518-536 165-183 (288)
292 KOG2114 Vacuolar assembly/sort 80.0 49 0.0011 38.2 14.7 141 305-463 376-516 (933)
293 PF00515 TPR_1: Tetratricopept 80.0 4.2 9E-05 25.8 4.2 29 472-500 2-30 (34)
294 KOG2114 Vacuolar assembly/sort 78.6 54 0.0012 37.9 14.5 183 331-535 363-549 (933)
295 KOG2297 Predicted translation 78.4 80 0.0017 31.9 15.9 19 249-267 141-159 (412)
296 KOG4648 Uncharacterized conser 77.4 6.2 0.00013 40.0 6.3 93 409-506 104-197 (536)
297 PF13374 TPR_10: Tetratricopep 77.4 5.2 0.00011 26.6 4.3 25 473-497 4-28 (42)
298 PF08631 SPO22: Meiosis protei 77.2 89 0.0019 31.8 28.1 164 368-534 85-273 (278)
299 COG3898 Uncharacterized membra 77.0 1E+02 0.0022 32.4 29.9 267 141-465 113-391 (531)
300 COG4649 Uncharacterized protei 76.6 63 0.0014 29.8 16.4 133 153-295 67-202 (221)
301 PF13374 TPR_10: Tetratricopep 76.3 6.1 0.00013 26.2 4.4 29 507-535 2-30 (42)
302 COG4649 Uncharacterized protei 75.8 67 0.0014 29.7 16.0 53 343-395 69-122 (221)
303 PF09613 HrpB1_HrpK: Bacterial 75.7 64 0.0014 29.5 14.0 53 343-396 21-73 (160)
304 PF11207 DUF2989: Protein of u 75.4 24 0.00051 33.5 9.2 70 420-490 124-197 (203)
305 PF08311 Mad3_BUB1_I: Mad3/BUB 74.6 27 0.00058 30.7 9.0 92 114-205 27-124 (126)
306 COG4785 NlpI Lipoprotein NlpI, 74.6 83 0.0018 30.2 14.1 99 156-260 77-175 (297)
307 PF07719 TPR_2: Tetratricopept 74.1 7.5 0.00016 24.4 4.2 29 472-500 2-30 (34)
308 KOG2610 Uncharacterized conser 73.3 1.2E+02 0.0025 31.3 21.5 154 308-463 114-273 (491)
309 PF13929 mRNA_stabil: mRNA sta 72.4 1.1E+02 0.0025 30.8 13.6 60 365-424 200-260 (292)
310 COG3947 Response regulator con 72.3 1.1E+02 0.0025 30.8 15.9 61 473-535 281-341 (361)
311 COG2976 Uncharacterized protei 71.7 93 0.002 29.5 14.9 94 443-543 95-193 (207)
312 PF00637 Clathrin: Region in C 71.5 1.3 2.9E-05 39.9 0.1 83 338-427 13-95 (143)
313 PF11207 DUF2989: Protein of u 71.2 35 0.00076 32.4 9.3 74 383-457 122-198 (203)
314 PF08424 NRDE-2: NRDE-2, neces 70.6 1.4E+02 0.0031 31.1 18.3 45 385-430 49-93 (321)
315 KOG0276 Vesicle coat complex C 70.3 64 0.0014 35.8 12.0 133 334-498 616-748 (794)
316 COG4455 ImpE Protein of avirul 68.7 31 0.00067 33.1 8.2 71 408-479 7-80 (273)
317 PF13181 TPR_8: Tetratricopept 68.6 7.5 0.00016 24.5 3.2 27 509-535 3-29 (34)
318 KOG4234 TPR repeat-containing 68.6 65 0.0014 30.5 10.1 89 412-501 105-198 (271)
319 cd00923 Cyt_c_Oxidase_Va Cytoc 68.2 38 0.00082 27.8 7.5 62 312-374 22-83 (103)
320 PF13762 MNE1: Mitochondrial s 68.1 80 0.0017 28.4 10.4 38 321-358 26-65 (145)
321 TIGR02508 type_III_yscG type I 68.0 69 0.0015 26.5 9.3 90 157-259 18-107 (115)
322 KOG0276 Vesicle coat complex C 67.7 58 0.0013 36.1 11.1 151 344-534 598-748 (794)
323 COG1747 Uncharacterized N-term 67.0 2E+02 0.0044 31.5 26.2 164 331-501 65-235 (711)
324 KOG1464 COP9 signalosome, subu 67.0 1.4E+02 0.003 29.7 23.4 174 290-464 21-218 (440)
325 PF06552 TOM20_plant: Plant sp 65.9 1.2E+02 0.0025 28.4 11.7 61 470-539 68-139 (186)
326 COG4455 ImpE Protein of avirul 65.3 19 0.00041 34.4 6.2 54 478-533 8-61 (273)
327 PF13929 mRNA_stabil: mRNA sta 65.3 1.6E+02 0.0035 29.8 15.3 65 398-462 198-263 (292)
328 TIGR02561 HrpB1_HrpK type III 65.1 1.1E+02 0.0023 27.7 12.6 52 450-501 23-74 (153)
329 PF02259 FAT: FAT domain; Int 63.0 2E+02 0.0044 30.1 21.5 64 436-499 145-212 (352)
330 PF13181 TPR_8: Tetratricopept 62.2 19 0.00042 22.5 4.2 29 472-500 2-30 (34)
331 COG2976 Uncharacterized protei 62.1 1.5E+02 0.0032 28.2 13.7 56 374-431 133-188 (207)
332 PF00637 Clathrin: Region in C 61.8 4.7 0.0001 36.3 1.7 86 149-245 12-97 (143)
333 KOG2063 Vacuolar assembly/sort 61.7 3.5E+02 0.0075 32.4 17.3 40 374-413 598-637 (877)
334 PF13174 TPR_6: Tetratricopept 61.2 13 0.00027 23.1 3.2 23 478-500 7-29 (33)
335 PF14527 LAGLIDADG_WhiA: WhiA 60.8 16 0.00034 30.1 4.4 44 698-741 30-74 (93)
336 KOG0890 Protein kinase of the 60.7 5.4E+02 0.012 34.3 30.7 306 156-501 1395-1732(2382)
337 PF02284 COX5A: Cytochrome c o 60.5 48 0.001 27.6 6.9 61 198-263 28-88 (108)
338 KOG0991 Replication factor C, 60.5 1.7E+02 0.0038 28.5 11.9 47 468-517 236-282 (333)
339 KOG2041 WD40 repeat protein [G 60.4 3.1E+02 0.0066 31.4 28.7 333 177-534 689-1084(1189)
340 KOG1585 Protein required for f 59.2 1.9E+02 0.0041 28.6 18.4 224 335-620 34-267 (308)
341 PRK09687 putative lyase; Provi 58.7 2.2E+02 0.0047 29.1 27.1 195 329-544 65-269 (280)
342 PF11848 DUF3368: Domain of un 58.1 33 0.00071 24.1 5.0 32 516-547 11-42 (48)
343 PF07721 TPR_4: Tetratricopept 58.1 14 0.00031 21.8 2.8 17 478-494 8-24 (26)
344 KOG4077 Cytochrome c oxidase, 57.3 62 0.0013 28.1 7.2 59 420-478 67-125 (149)
345 PF11663 Toxin_YhaV: Toxin wit 57.0 12 0.00027 32.6 3.2 33 191-225 106-138 (140)
346 PHA02875 ankyrin repeat protei 56.5 53 0.0011 35.7 9.2 37 424-460 117-155 (413)
347 KOG3807 Predicted membrane pro 56.3 2.4E+02 0.0053 28.9 12.6 50 231-290 197-246 (556)
348 COG1747 Uncharacterized N-term 56.0 3.1E+02 0.0068 30.1 25.7 172 305-483 74-251 (711)
349 PF10345 Cohesin_load: Cohesin 55.6 3.8E+02 0.0082 31.0 32.0 87 158-245 153-252 (608)
350 PHA02875 ankyrin repeat protei 54.8 1.3E+02 0.0028 32.6 11.9 206 274-507 13-230 (413)
351 TIGR02561 HrpB1_HrpK type III 54.8 1.6E+02 0.0036 26.5 12.6 50 345-396 23-73 (153)
352 PF13174 TPR_6: Tetratricopept 54.4 25 0.00055 21.6 3.8 24 373-396 6-29 (33)
353 KOG1920 IkappaB kinase complex 54.3 5E+02 0.011 31.9 22.0 128 381-535 894-1027(1265)
354 TIGR02508 type_III_yscG type I 53.7 1.3E+02 0.0028 25.0 8.2 53 374-432 46-98 (115)
355 COG3947 Response regulator con 53.4 2.6E+02 0.0056 28.4 16.4 61 439-499 281-341 (361)
356 PF08424 NRDE-2: NRDE-2, neces 53.0 2.9E+02 0.0063 28.8 17.2 120 418-538 47-185 (321)
357 PF10579 Rapsyn_N: Rapsyn N-te 52.4 32 0.0007 27.0 4.5 48 483-530 18-66 (80)
358 TIGR03504 FimV_Cterm FimV C-te 52.3 24 0.00051 24.3 3.4 25 477-501 5-29 (44)
359 PF14689 SPOB_a: Sensor_kinase 51.8 35 0.00076 25.5 4.6 47 486-535 5-51 (62)
360 KOG1586 Protein required for f 51.7 2.4E+02 0.0053 27.6 14.5 12 275-286 29-40 (288)
361 PF05944 Phage_term_smal: Phag 48.9 82 0.0018 27.8 7.1 43 137-179 41-83 (132)
362 PF10579 Rapsyn_N: Rapsyn N-te 48.7 36 0.00079 26.8 4.3 45 449-493 18-65 (80)
363 PF11846 DUF3366: Domain of un 48.2 79 0.0017 30.1 7.8 34 467-500 140-173 (193)
364 PF06552 TOM20_plant: Plant sp 47.8 1.1E+02 0.0023 28.7 7.9 46 487-535 51-108 (186)
365 PF13762 MNE1: Mitochondrial s 47.7 2.1E+02 0.0046 25.7 10.6 94 358-451 28-129 (145)
366 TIGR03504 FimV_Cterm FimV C-te 46.9 40 0.00086 23.2 3.8 21 374-394 6-26 (44)
367 PF04097 Nic96: Nup93/Nic96; 46.5 5.2E+02 0.011 29.9 19.6 295 214-534 111-441 (613)
368 PF02259 FAT: FAT domain; Int 46.4 3.7E+02 0.008 28.1 25.8 64 332-395 146-212 (352)
369 KOG2297 Predicted translation 46.2 3.4E+02 0.0074 27.7 15.3 69 449-527 267-341 (412)
370 PRK15180 Vi polysaccharide bio 46.1 1.6E+02 0.0034 31.8 9.7 129 409-544 296-424 (831)
371 smart00386 HAT HAT (Half-A-TPR 45.0 48 0.001 20.1 4.0 26 453-478 3-28 (33)
372 COG5108 RPO41 Mitochondrial DN 44.5 1.2E+02 0.0025 34.2 8.8 75 407-483 33-115 (1117)
373 COG2178 Predicted RNA-binding 44.3 2.9E+02 0.0062 26.2 10.5 16 484-499 134-149 (204)
374 KOG0991 Replication factor C, 44.2 3E+02 0.0065 27.0 10.4 103 153-264 168-282 (333)
375 PF07163 Pex26: Pex26 protein; 44.1 2.4E+02 0.0052 28.4 10.1 49 446-494 127-181 (309)
376 cd08819 CARD_MDA5_2 Caspase ac 43.9 1.2E+02 0.0026 24.5 6.6 35 380-419 49-83 (88)
377 PF09477 Type_III_YscG: Bacter 43.8 2E+02 0.0043 24.3 9.2 30 505-536 69-98 (116)
378 PF09477 Type_III_YscG: Bacter 43.6 2E+02 0.0044 24.3 9.9 89 156-257 18-106 (116)
379 PF09413 DUF2007: Domain of un 42.6 59 0.0013 24.5 4.8 50 695-744 5-65 (67)
380 PF11663 Toxin_YhaV: Toxin wit 42.3 27 0.00058 30.6 3.0 34 377-412 105-138 (140)
381 COG2909 MalT ATP-dependent tra 41.4 6.8E+02 0.015 29.8 27.7 194 343-537 426-648 (894)
382 KOG2066 Vacuolar assembly/sort 41.2 6.4E+02 0.014 29.4 24.9 103 153-266 365-467 (846)
383 smart00028 TPR Tetratricopepti 41.0 54 0.0012 19.0 3.8 26 474-499 4-29 (34)
384 TIGR01228 hutU urocanate hydra 39.2 2.6E+02 0.0056 30.6 10.2 27 517-543 403-429 (545)
385 PF04190 DUF410: Protein of un 39.2 3.7E+02 0.008 27.0 11.2 193 374-615 17-238 (260)
386 KOG1308 Hsp70-interacting prot 38.3 7.6 0.00016 39.6 -1.0 125 586-721 127-254 (377)
387 cd00280 TRFH Telomeric Repeat 37.6 2.2E+02 0.0047 26.8 8.1 41 477-521 117-157 (200)
388 cd08819 CARD_MDA5_2 Caspase ac 37.1 1.9E+02 0.0042 23.4 6.8 66 386-457 21-86 (88)
389 KOG2471 TPR repeat-containing 36.9 6E+02 0.013 27.9 13.9 108 375-483 248-381 (696)
390 PF11848 DUF3368: Domain of un 36.7 1.1E+02 0.0023 21.5 4.9 27 193-219 15-41 (48)
391 PRK09687 putative lyase; Provi 36.6 4.8E+02 0.01 26.6 28.0 184 314-518 89-278 (280)
392 COG0790 FOG: TPR repeat, SEL1 35.5 4.9E+02 0.011 26.4 24.8 79 455-540 173-270 (292)
393 PF11846 DUF3366: Domain of un 35.4 1.3E+02 0.0028 28.6 7.0 45 488-535 128-172 (193)
394 PF14689 SPOB_a: Sensor_kinase 35.4 94 0.002 23.2 4.7 21 408-428 29-49 (62)
395 PF07163 Pex26: Pex26 protein; 35.0 4.1E+02 0.0089 26.9 10.1 88 338-425 89-181 (309)
396 KOG4507 Uncharacterized conser 32.9 2.4E+02 0.0052 31.5 8.8 134 399-535 568-704 (886)
397 PF08311 Mad3_BUB1_I: Mad3/BUB 32.7 3.4E+02 0.0073 23.7 8.8 44 489-532 81-124 (126)
398 TIGR01228 hutU urocanate hydra 32.7 1.4E+02 0.0031 32.5 7.1 23 346-368 230-252 (545)
399 PHA02537 M terminase endonucle 32.4 5E+02 0.011 25.5 12.0 116 132-247 71-207 (230)
400 PF09868 DUF2095: Uncharacteri 32.3 1.3E+02 0.0028 25.5 5.2 32 141-176 62-93 (128)
401 PRK10564 maltose regulon perip 31.2 1.1E+02 0.0023 31.3 5.6 37 328-364 252-289 (303)
402 smart00777 Mad3_BUB1_I Mad3/BU 30.5 1.8E+02 0.0039 25.4 6.3 43 488-531 80-123 (125)
403 PF10366 Vps39_1: Vacuolar sor 30.4 1.1E+02 0.0023 26.0 4.9 26 474-499 42-67 (108)
404 KOG2396 HAT (Half-A-TPR) repea 30.0 7.9E+02 0.017 27.2 24.0 290 161-472 268-565 (568)
405 KOG4642 Chaperone-dependent E3 30.0 3.8E+02 0.0082 26.5 8.7 83 447-533 20-104 (284)
406 KOG4507 Uncharacterized conser 29.9 3.3E+02 0.0073 30.4 9.3 151 365-518 569-721 (886)
407 KOG4567 GTPase-activating prot 29.3 2.3E+02 0.005 28.9 7.4 43 281-325 264-306 (370)
408 COG2178 Predicted RNA-binding 29.1 5.1E+02 0.011 24.6 10.8 18 518-535 132-149 (204)
409 PF10475 DUF2450: Protein of u 29.0 4.8E+02 0.011 26.7 10.4 52 338-395 104-155 (291)
410 PF11768 DUF3312: Protein of u 28.3 4E+02 0.0086 29.7 9.7 21 373-393 414-434 (545)
411 smart00777 Mad3_BUB1_I Mad3/BU 28.2 1.7E+02 0.0036 25.6 5.7 42 198-242 81-123 (125)
412 KOG3636 Uncharacterized conser 28.0 7.9E+02 0.017 26.5 14.1 88 430-518 176-271 (669)
413 PF14853 Fis1_TPR_C: Fis1 C-te 27.7 72 0.0016 23.0 2.8 29 512-544 6-34 (53)
414 KOG2908 26S proteasome regulat 27.5 7.3E+02 0.016 25.9 11.6 73 312-384 90-174 (380)
415 smart00804 TAP_C C-terminal do 27.4 47 0.001 25.0 1.9 22 486-507 40-61 (63)
416 PRK10941 hypothetical protein; 27.3 4.8E+02 0.01 26.4 9.7 59 408-467 187-245 (269)
417 PRK10564 maltose regulon perip 26.6 1.2E+02 0.0026 30.9 5.1 41 365-405 254-295 (303)
418 KOG4077 Cytochrome c oxidase, 26.4 4E+02 0.0086 23.4 7.3 59 198-261 67-125 (149)
419 PRK10941 hypothetical protein; 26.2 6.9E+02 0.015 25.3 11.1 60 441-500 185-244 (269)
420 PF10345 Cohesin_load: Cohesin 26.2 1.1E+03 0.023 27.3 37.0 186 163-358 40-251 (608)
421 PF10255 Paf67: RNA polymerase 26.2 2.2E+02 0.0048 30.6 7.4 63 332-394 122-191 (404)
422 PF10366 Vps39_1: Vacuolar sor 25.9 3.5E+02 0.0076 22.9 7.2 27 369-395 41-67 (108)
423 KOG0686 COP9 signalosome, subu 25.9 8.5E+02 0.018 26.2 15.5 44 508-554 307-350 (466)
424 TIGR02710 CRISPR-associated pr 25.8 7.4E+02 0.016 26.5 11.0 22 377-398 140-161 (380)
425 PRK05414 urocanate hydratase; 25.8 5.6E+02 0.012 28.3 10.0 27 517-543 412-438 (556)
426 PF09454 Vps23_core: Vps23 cor 25.5 89 0.0019 23.7 3.1 50 176-226 4-53 (65)
427 PF11838 ERAP1_C: ERAP1-like C 25.4 7.5E+02 0.016 25.4 18.8 81 418-500 146-230 (324)
428 PF12862 Apc5: Anaphase-promot 25.4 3.5E+02 0.0076 22.0 7.1 20 479-498 49-68 (94)
429 KOG2582 COP9 signalosome, subu 25.2 5.3E+02 0.011 27.2 9.3 20 153-172 192-211 (422)
430 PF09670 Cas_Cas02710: CRISPR- 25.2 4.3E+02 0.0093 28.3 9.5 124 271-395 142-269 (379)
431 PRK09857 putative transposase; 24.3 7.1E+02 0.015 25.5 10.5 20 518-537 251-270 (292)
432 COG0735 Fur Fe2+/Zn2+ uptake r 24.0 3.9E+02 0.0085 24.0 7.6 43 408-450 26-68 (145)
433 COG4003 Uncharacterized protei 24.0 1.1E+02 0.0025 24.0 3.4 29 477-505 37-65 (98)
434 PF12862 Apc5: Anaphase-promot 23.7 4E+02 0.0087 21.6 8.8 23 443-465 47-69 (94)
435 PHA03100 ankyrin repeat protei 23.6 1E+03 0.022 26.2 14.1 143 305-461 40-197 (480)
436 COG4003 Uncharacterized protei 23.6 1.1E+02 0.0024 24.0 3.3 26 185-210 36-61 (98)
437 PF14561 TPR_20: Tetratricopep 23.5 4E+02 0.0088 21.6 8.5 57 466-522 17-73 (90)
438 KOG3364 Membrane protein invol 23.3 5.2E+02 0.011 23.1 7.6 82 457-543 19-103 (149)
439 PF09454 Vps23_core: Vps23 cor 23.3 1.6E+02 0.0034 22.4 4.0 50 468-519 5-54 (65)
440 PF01514 YscJ_FliF: Secretory 23.3 1.4E+02 0.0031 28.8 4.9 47 698-744 36-82 (206)
441 PHA03100 ankyrin repeat protei 23.3 2.9E+02 0.0063 30.6 8.3 135 317-461 86-238 (480)
442 KOG2062 26S proteasome regulat 23.0 5E+02 0.011 30.1 9.4 136 376-515 510-647 (929)
443 KOG4642 Chaperone-dependent E3 22.8 7.5E+02 0.016 24.5 10.7 83 377-463 20-104 (284)
444 KOG0687 26S proteasome regulat 22.8 8.7E+02 0.019 25.2 16.6 134 328-465 66-209 (393)
445 PRK14136 recX recombination re 22.7 8.5E+02 0.018 25.1 16.2 84 250-364 158-241 (309)
446 PF09090 MIF4G_like_2: MIF4G l 22.7 5.9E+02 0.013 25.4 9.4 17 485-501 106-122 (253)
447 PF07575 Nucleopor_Nup85: Nup8 22.2 6.9E+02 0.015 28.5 11.0 30 401-430 404-433 (566)
448 PRK09857 putative transposase; 22.0 7.1E+02 0.015 25.5 10.0 66 335-401 209-274 (292)
449 COG0735 Fur Fe2+/Zn2+ uptake r 21.8 5.2E+02 0.011 23.2 8.0 47 357-404 11-57 (145)
450 KOG0890 Protein kinase of the 21.7 2.1E+03 0.046 29.3 25.4 261 186-470 1455-1735(2382)
451 PF07023 DUF1315: Protein of u 21.4 3.1E+02 0.0067 22.5 5.5 50 531-587 2-51 (93)
452 PRK00117 recX recombination re 21.3 6.2E+02 0.013 22.9 16.2 49 314-364 43-91 (157)
453 PF10475 DUF2450: Protein of u 21.1 6.8E+02 0.015 25.6 9.8 113 372-495 103-221 (291)
454 PRK11619 lytic murein transgly 20.9 1.3E+03 0.029 26.7 29.1 117 416-535 255-374 (644)
455 smart00638 LPD_N Lipoprotein N 20.9 1.3E+03 0.027 26.4 28.4 43 216-267 311-353 (574)
456 KOG2063 Vacuolar assembly/sort 20.9 6.1E+02 0.013 30.4 10.1 115 369-483 506-638 (877)
457 KOG0545 Aryl-hydrocarbon recep 20.7 8.4E+02 0.018 24.3 9.3 92 447-544 188-297 (329)
458 PF11838 ERAP1_C: ERAP1-like C 20.7 9.3E+02 0.02 24.7 18.9 79 349-430 147-229 (324)
459 KOG1258 mRNA processing protei 20.1 1.3E+03 0.028 26.1 35.5 385 119-535 52-469 (577)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8.2e-68 Score=628.46 Aligned_cols=616 Identities=17% Similarity=0.147 Sum_probs=493.6
Q ss_pred chhHhhhhCCChhhHHHhhhchh----hHHHHHHHHhhccCCCcchhhHHHHHHhhccccCCcchHHHHH--HHhhcCCh
Q 003913 87 AGSEMRHLGEPVVEVIELEELPE----QWRRAKLAWLCKELPSHKGGTLVRILNAQKKWLRQEDGTYLAV--HCMRIREN 160 (787)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~t~~~~--~~~~~~~~ 160 (787)
+.+.+.+.+..+.+.++|++|+. .|+ .++..+++.+..+.+..++..|... |+.||.+||+.+ +|++.+++
T Consensus 127 li~~~~~~g~~~~A~~~f~~m~~~d~~~~n-~li~~~~~~g~~~~A~~~f~~M~~~--g~~Pd~~t~~~ll~~~~~~~~~ 203 (857)
T PLN03077 127 MLSMFVRFGELVHAWYVFGKMPERDLFSWN-VLVGGYAKAGYFDEALCLYHRMLWA--GVRPDVYTFPCVLRTCGGIPDL 203 (857)
T ss_pred HHHHHHhCCChHHHHHHHhcCCCCCeeEHH-HHHHHHHhCCCHHHHHHHHHHHHHc--CCCCChhHHHHHHHHhCCccch
Confidence 34556778888999999999985 343 4667778889888888888877644 799999999998 89999999
Q ss_pred hHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHHHHHHH
Q 003913 161 ETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSI 240 (787)
Q Consensus 161 ~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~~A~~l 240 (787)
+.+.+++..|.+.| +.||..+||+||++|+++|++++|.++|++|+. ||.++||+||.+|+ +.|++++|+++
T Consensus 204 ~~~~~~~~~~~~~g-~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~---~~g~~~eAl~l 275 (857)
T PLN03077 204 ARGREVHAHVVRFG-FELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYF---ENGECLEGLEL 275 (857)
T ss_pred hhHHHHHHHHHHcC-CCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHH---hCCCHHHHHHH
Confidence 99999999999998 899999999999999999999999999999975 69999999999999 89999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHH-----------------
Q 003913 241 YNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIW----------------- 303 (787)
Q Consensus 241 ~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~----------------- 303 (787)
|++|.+. |+.||.+||+++|.+|++. |+++.|.+++..|.+.|+.||..+|+.++.
T Consensus 276 f~~M~~~-g~~Pd~~ty~~ll~a~~~~------g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~ 348 (857)
T PLN03077 276 FFTMREL-SVDPDLMTITSVISACELL------GDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSR 348 (857)
T ss_pred HHHHHHc-CCCCChhHHHHHHHHHHhc------CChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhh
Confidence 9999986 8999999999999999986 688899999999999898888888887773
Q ss_pred ------------HhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 003913 304 ------------LHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFV 371 (787)
Q Consensus 304 ------------~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 371 (787)
+.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.|++++|.++++.|.+.|+.|+..+||
T Consensus 349 m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n 428 (857)
T PLN03077 349 METKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVAN 428 (857)
T ss_pred CCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHH
Confidence 34567777778888888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH-------
Q 003913 372 YKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLT------- 444 (787)
Q Consensus 372 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li------- 444 (787)
+||++|+++|++++|.++|++|.+ +|.++||++|.+|++.|+.++|..+|++|.+ ++.||..||++++
T Consensus 429 ~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g 503 (857)
T PLN03077 429 ALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIG 503 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhc
Confidence 999999999999999999988865 3667777777777777777777777777764 4667766666555
Q ss_pred ----------------------------HHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003913 445 ----------------------------NMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNH 496 (787)
Q Consensus 445 ----------------------------~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 496 (787)
++|+++|++++|.++|+.+ .||..+||+||.+|++.|+.++|+++|++
T Consensus 504 ~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~ 579 (857)
T PLN03077 504 ALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNR 579 (857)
T ss_pred hHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555556666666666554 68999999999999999999999999999
Q ss_pred hhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH-HcCCccCHHHHHHHHHHHhhcccccc---cccccCCchHHH
Q 003913 497 MHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC-LKKYEIESAWMEKLDYVLSLNRKEVK---KPVSLNLSSEQR 572 (787)
Q Consensus 497 m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~~~p~~~~~l~~~~~l~~~~~~---~~~~~~l~~~~~ 572 (787)
|.+.| +.||.+||+++|.+|++.|++++|.++|+.|. +.|+.|+..++..+..++.-.....+ .-..|++ +|+
T Consensus 580 M~~~g-~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~--~pd 656 (857)
T PLN03077 580 MVESG-VNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPI--TPD 656 (857)
T ss_pred HHHcC-CCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCC--CCC
Confidence 99999 89999999999999999999999999999999 56777776666555554443322111 1112333 456
Q ss_pred HHHHHHHhhhhhhccchhhcceeEE--EEEccCCcccHHHHHHHHHHchhhcCCCccc----cCCCCCcceE-Eeeeccc
Q 003913 573 ENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSFKV----SDGNDDIPYK-YSTISHP 645 (787)
Q Consensus 573 ~~~~~~ll~~~~~~~~~~~a~~~~~--~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~----~~~~~~~p~~-~~t~~~~ 645 (787)
..+|++|+++|..+++.+.|+.+.+ ++++|+++.+|++|+++|+..|+|++|..+. .++..+.|.. |..+...
T Consensus 657 ~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~ 736 (857)
T PLN03077 657 PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGK 736 (857)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCE
Confidence 9999999999999999999998887 8899999999999999999999999998777 5667777763 4444332
Q ss_pred h-HHHHHHhhccCccc-------ccccchhhcCChhHHHHHhhcCCcccCCCcEEEEccCCHHHHHHHHHHHhh-C-CCc
Q 003913 646 Y-FCFYADKFWPKGRL-------VIPKLIHRWLTPRALAYWFMYGGHRTSVGDILLKLKVSSEGIALVFKTLKA-R-SLD 715 (787)
Q Consensus 646 ~-~~~~~~g~~~~a~~-------~~~~mi~~gl~P~~lay~~m~~g~~~~~g~~~~~~~g~~~e~~~l~~~l~~-~-gl~ 715 (787)
. .....+..+++..+ +..+|.+.|..||... .+++.. +.....++.| .|-+.+.-.|-. . |-.
T Consensus 737 ~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~--~~~~~~-~~k~~~~~~h----se~la~a~~l~~~~~~~~ 809 (857)
T PLN03077 737 VHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESS--SMDEIE-VSKDDIFCGH----SERLAIAFGLINTVPGMP 809 (857)
T ss_pred EEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcch--hccccH-HHHHHHHHhc----cHHHHHHHhhhcCCCCCe
Confidence 2 22233344444433 4567788999998642 333321 1112223333 344444444443 3 877
Q ss_pred eEEEecCcEEEEEEeCCchHHHHHhcc
Q 003913 716 CRVKKKGRVFWIGFLGSNSTLFWKLIE 742 (787)
Q Consensus 716 ~~~~~~~~~~~i~~~~~~~~~~~~lv~ 742 (787)
.+|.|+ .|||-++|+..+|++.|.
T Consensus 810 i~i~kn---lr~c~dch~~~k~~s~~~ 833 (857)
T PLN03077 810 IWVTKN---LYMCENCHNTVKFISKIV 833 (857)
T ss_pred EEEeCC---CEeCccHHHHHHHHHHHh
Confidence 777777 799999999999998764
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.9e-65 Score=593.73 Aligned_cols=544 Identities=12% Similarity=0.109 Sum_probs=360.4
Q ss_pred HHHHhhccCCCcchhhHHHHHHhhccccCCcchHHHHH--HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHc
Q 003913 115 KLAWLCKELPSHKGGTLVRILNAQKKWLRQEDGTYLAV--HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGK 192 (787)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~t~~~~--~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~ 192 (787)
.+.-+++.+....+..+++.|...+ -+.++..++..+ .|.+.|.+++|+++|+.|.. ||..+|+.+|.+|++
T Consensus 376 ~y~~l~r~G~l~eAl~Lfd~M~~~g-vv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd~~Tyn~LL~a~~k 449 (1060)
T PLN03218 376 AYNRLLRDGRIKDCIDLLEDMEKRG-LLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PTLSTFNMLMSVCAS 449 (1060)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHhCC-CCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CCHHHHHHHHHHHHh
Confidence 3444555566666666666655432 234555555444 66667777777777776643 577777777777777
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCC
Q 003913 193 ERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLS 272 (787)
Q Consensus 193 ~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~ 272 (787)
.|+++.|.++|++|.+.|+.||..+||+||.+|+ +.|++++|.++|++|.+. |+.||.+||+++|.+|++.
T Consensus 450 ~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~---k~G~vd~A~~vf~eM~~~-Gv~PdvvTynaLI~gy~k~----- 520 (1060)
T PLN03218 450 SQDIDGALRVLRLVQEAGLKADCKLYTTLISTCA---KSGKVDAMFEVFHEMVNA-GVEANVHTFGALIDGCARA----- 520 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---hCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHC-----
Confidence 7777777777777777777777777777777777 677777777777777765 6777777777777777765
Q ss_pred hhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhcCChHH
Q 003913 273 KYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQ--AGFEEGKEVLLSVLRVCAKEGDVED 350 (787)
Q Consensus 273 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~--~g~~p~~~t~~~li~~~~~~g~~~~ 350 (787)
|++++|.++|++|.+.|+.||..+|+.++ .+|++.|++++|.++|++|.. .|+.||.+||++||.+|++.|++++
T Consensus 521 -G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI--~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~lde 597 (1060)
T PLN03218 521 -GQVAKAFGAYGIMRSKNVKPDRVVFNALI--SACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDR 597 (1060)
T ss_pred -cCHHHHHHHHHHHHHcCCCCCHHHHHHHH--HHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHH
Confidence 57777777777777777777777777777 667777777777777777765 4667777777777777777777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003913 351 AEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVE 430 (787)
Q Consensus 351 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 430 (787)
|.++|+.|.+.|+.|+..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+
T Consensus 598 A~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k 677 (1060)
T PLN03218 598 AKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK 677 (1060)
T ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHH
Q 003913 431 TGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE-KCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRS 509 (787)
Q Consensus 431 ~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t 509 (787)
.|+.||..+|++||.+|++.|++++|.++|++|.+ ++.||..+||+||.+|++.|++++|.++|++|.+.| +.||..|
T Consensus 678 ~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~G-i~Pd~~T 756 (1060)
T PLN03218 678 QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG-LCPNTIT 756 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCCHHH
Confidence 77777777777777777777777777777777766 677777777777777777777777777777777776 6777777
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhhhhccch
Q 003913 510 CNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDE 589 (787)
Q Consensus 510 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~ 589 (787)
|++||.+|++.|++++|.++|++|.+.|+.++ ..+|++|++.|.. .+
T Consensus 757 y~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd-------------------------------~~tynsLIglc~~--~y 803 (1060)
T PLN03218 757 YSILLVASERKDDADVGLDLLSQAKEDGIKPN-------------------------------LVMCRCITGLCLR--RF 803 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-------------------------------HHHHHHHHHHHHH--HH
Confidence 77777777777777777777777777665443 3445555544432 22
Q ss_pred hhcceeEE--EEEccCCcccHHHHHHHHHHchhhcCCCccccC--CCCCcceEEeeeccchHHHHHHhhccCcccccccc
Q 003913 590 KRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSFKVSD--GNDDIPYKYSTISHPYFCFYADKFWPKGRLVIPKL 665 (787)
Q Consensus 590 ~~a~~~~~--~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~--~~~~~p~~~~t~~~~~~~~~~~g~~~~a~~~~~~m 665 (787)
+++....+ ..+++.+. +...+..++|...+.+ ..+..|+ ..|+..+.-.++..+....+..++..|
T Consensus 804 ~ka~~l~~~v~~f~~g~~---------~~~n~w~~~Al~lf~eM~~~Gi~Pd-~~T~~~vL~cl~~~~~~~~~~~m~~~m 873 (1060)
T PLN03218 804 EKACALGEPVVSFDSGRP---------QIENKWTSWALMVYRETISAGTLPT-MEVLSQVLGCLQLPHDATLRNRLIENL 873 (1060)
T ss_pred HHHhhhhhhhhhhhcccc---------ccccchHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccccHHHHHHHHHHh
Confidence 22222211 11111110 0001111223333321 1223343 334444333344444444555556666
Q ss_pred hhhcCChhHHHHHhhcCCcccCCCcEEEEccC-CHHHHHHHHHHHhhCCCceEEEecCcEEEEEEeCCch
Q 003913 666 IHRWLTPRALAYWFMYGGHRTSVGDILLKLKV-SSEGIALVFKTLKARSLDCRVKKKGRVFWIGFLGSNS 734 (787)
Q Consensus 666 i~~gl~P~~lay~~m~~g~~~~~g~~~~~~~g-~~~e~~~l~~~l~~~gl~~~~~~~~~~~~i~~~~~~~ 734 (787)
...+..|+..+|+++++|+ | ..++|..++++|...|+.|+++.+.. .+-++..+.
T Consensus 874 ~~~~~~~~~~~y~~Li~g~------------~~~~~~A~~l~~em~~~Gi~p~~~~~~~--~~~~d~~~~ 929 (1060)
T PLN03218 874 GISADSQKQSNLSTLVDGF------------GEYDPRAFSLLEEAASLGVVPSVSFKKS--PIVIDAEEL 929 (1060)
T ss_pred ccCCCCcchhhhHHHHHhh------------ccChHHHHHHHHHHHHcCCCCCcccccC--ceEEEcccC
Confidence 6667777788888888883 3 34789999999999999999987655 344555543
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.5e-64 Score=585.91 Aligned_cols=538 Identities=14% Similarity=0.125 Sum_probs=465.2
Q ss_pred CcchHHHHH--HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHH
Q 003913 144 QEDGTYLAV--HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHIL 221 (787)
Q Consensus 144 p~~~t~~~~--~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~l 221 (787)
++...|..+ .|++.|++++|+++|++|.+.|.++++..+++.++..|++.|.+++|..+|+.|.. ||..+||.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L 443 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML 443 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence 344444444 77799999999999999999997788999999999999999999999999999975 899999999
Q ss_pred HHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHH
Q 003913 222 IVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGL 301 (787)
Q Consensus 222 i~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 301 (787)
|.+|+ +.|++++|.++|++|.+. |+.||.++|+++|.+|++. |++++|.++|++|.+.|+.||..+|+.+
T Consensus 444 L~a~~---k~g~~e~A~~lf~~M~~~-Gl~pD~~tynsLI~~y~k~------G~vd~A~~vf~eM~~~Gv~PdvvTynaL 513 (1060)
T PLN03218 444 MSVCA---SSQDIDGALRVLRLVQEA-GLKADCKLYTTLISTCAKS------GKVDAMFEVFHEMVNAGVEANVHTFGAL 513 (1060)
T ss_pred HHHHH---hCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhC------cCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 99999 899999999999999997 8999999999999999987 7999999999999999999999999999
Q ss_pred HHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHH
Q 003913 302 IWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLE--SDNGIPTPAFVYKMEAYAK 379 (787)
Q Consensus 302 i~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~~~~~li~~~~~ 379 (787)
| .+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+ .|+.||..+|++||.+|++
T Consensus 514 I--~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k 591 (1060)
T PLN03218 514 I--DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN 591 (1060)
T ss_pred H--HHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 9 99999999999999999999999999999999999999999999999999999986 6789999999999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003913 380 IGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLA 459 (787)
Q Consensus 380 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~ 459 (787)
.|++++|.++|++|.+.|+.|+..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.||.+|++.|++++|.++
T Consensus 592 ~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l 671 (1060)
T PLN03218 592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEI 671 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC
Q 003913 460 FSECLE-KCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKY 538 (787)
Q Consensus 460 ~~~m~~-~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 538 (787)
|++|.+ ++.||..+|++||.+|+++|++++|.++|++|.+.| +.||..+|++||.+|++.|++++|.++|++|.+.|+
T Consensus 672 ~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g-~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi 750 (1060)
T PLN03218 672 LQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK-LRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGL 750 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 999998 999999999999999999999999999999999998 899999999999999999999999999999998885
Q ss_pred ccCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhhhhccchhhcceeEE----EEEccCCcccHHHHHHH
Q 003913 539 EIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR----FQFNENSRMHSVLRRYL 614 (787)
Q Consensus 539 ~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~----~~~~p~~~~~~~~l~~~ 614 (787)
.| + ..+|++|+.+|++.|+++.|.+++. ..+.|+ ...|..|.++
T Consensus 751 ~P--d-----------------------------~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd-~~tynsLIgl 798 (1060)
T PLN03218 751 CP--N-----------------------------TITYSILLVASERKDDADVGLDLLSQAKEDGIKPN-LVMCRCITGL 798 (1060)
T ss_pred CC--C-----------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Confidence 44 3 6789999999999999999999887 455664 4456666666
Q ss_pred HH----HchhhcCCCccccCCCCCcceEEeeeccchHHHHHHhhccCcccccccchhhcCChhHHHHHhhcCCcccCCCc
Q 003913 615 YD----QYHEWLHPSFKVSDGNDDIPYKYSTISHPYFCFYADKFWPKGRLVIPKLIHRWLTPRALAYWFMYGGHRTSVGD 690 (787)
Q Consensus 615 y~----~~g~~~~A~~~~~~~~~~~p~~~~t~~~~~~~~~~~g~~~~a~~~~~~mi~~gl~P~~lay~~m~~g~~~~~g~ 690 (787)
|. +++...++...+..+ . .....++..+|..+|.+|++.|+.||..||..++++
T Consensus 799 c~~~y~ka~~l~~~v~~f~~g---~------------~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~c------- 856 (1060)
T PLN03218 799 CLRRFEKACALGEPVVSFDSG---R------------PQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGC------- 856 (1060)
T ss_pred HHHHHHHHhhhhhhhhhhhcc---c------------cccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-------
Confidence 43 333333322222110 0 111234556799999999999999999999999965
Q ss_pred EEEEccCCHHHHHHHHHHHhhCCCceEEEecCcEEE-EE-EeCCchHHHHHhcccccccccccccc
Q 003913 691 ILLKLKVSSEGIALVFKTLKARSLDCRVKKKGRVFW-IG-FLGSNSTLFWKLIEPYVLDELKEDLL 754 (787)
Q Consensus 691 ~~~~~~g~~~e~~~l~~~l~~~gl~~~~~~~~~~~~-i~-~~~~~~~~~~~lv~~~~~~~m~~k~~ 754 (787)
++..+..+.+..+++.|...+..+.......... .. ........|-+..+--|.|+..+|-.
T Consensus 857 --l~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~~~~A~~l~~em~~~Gi~p~~~~~~~ 920 (1060)
T PLN03218 857 --LQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEYDPRAFSLLEEAASLGVVPSVSFKKS 920 (1060)
T ss_pred --hcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccChHHHHHHHHHHHHcCCCCCcccccC
Confidence 3344567777777777776666555433222111 00 12335556666677777788876433
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.1e-65 Score=603.92 Aligned_cols=553 Identities=12% Similarity=0.070 Sum_probs=444.5
Q ss_pred hHhhhhCCChhhHHHhhhchhhH-------HHHHHHHhhccCCCcchhhHHHHHHhhccccCCcchHHHHH--HHhhcCC
Q 003913 89 SEMRHLGEPVVEVIELEELPEQW-------RRAKLAWLCKELPSHKGGTLVRILNAQKKWLRQEDGTYLAV--HCMRIRE 159 (787)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~w-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~t~~~~--~~~~~~~ 159 (787)
..+.+.+..+.+..+|+.++... -..++....+.+....+..+...+... +..++...++.+ .+++.|+
T Consensus 59 ~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~n~li~~~~~~g~ 136 (857)
T PLN03077 59 RALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSS--HPSLGVRLGNAMLSMFVRFGE 136 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHc--CCCCCchHHHHHHHHHHhCCC
Confidence 34444455556666666554310 022344444445555555555554433 456777777666 6778888
Q ss_pred hhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHHHHHH
Q 003913 160 NETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACS 239 (787)
Q Consensus 160 ~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~~A~~ 239 (787)
++.|+++|++|.+ +|+.+||++|.+|++.|++++|+++|++|...|+.||.+||+++|.+|+ +.+++..+.+
T Consensus 137 ~~~A~~~f~~m~~-----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~---~~~~~~~~~~ 208 (857)
T PLN03077 137 LVHAWYVFGKMPE-----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCG---GIPDLARGRE 208 (857)
T ss_pred hHHHHHHHhcCCC-----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhC---CccchhhHHH
Confidence 8888888888853 4778888888888888888888888888888888888888888888888 7888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHH
Q 003913 240 IYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLL 319 (787)
Q Consensus 240 l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l 319 (787)
++..|.+. |+.||..+||++|.+|++. |++++|.++|++|.. ||..+|+.++ .+|++.|+.++|+++
T Consensus 209 ~~~~~~~~-g~~~~~~~~n~Li~~y~k~------g~~~~A~~lf~~m~~----~d~~s~n~li--~~~~~~g~~~eAl~l 275 (857)
T PLN03077 209 VHAHVVRF-GFELDVDVVNALITMYVKC------GDVVSARLVFDRMPR----RDCISWNAMI--SGYFENGECLEGLEL 275 (857)
T ss_pred HHHHHHHc-CCCcccchHhHHHHHHhcC------CCHHHHHHHHhcCCC----CCcchhHHHH--HHHHhCCCHHHHHHH
Confidence 88888886 7888888888888888886 688999999988853 5677888888 888899999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 003913 320 KKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGS 399 (787)
Q Consensus 320 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 399 (787)
|++|.+.|+.||..||+++|.+|++.|+++.|.+++..|.+.|+.||..+||+||.+|+++|++++|.++|++|..
T Consensus 276 f~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---- 351 (857)
T PLN03077 276 FFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---- 351 (857)
T ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCHHHHHHHH
Q 003913 400 ASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE-KCRPNRTIYGIYL 478 (787)
Q Consensus 400 p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-~~~p~~~~~~~li 478 (787)
||.++||+||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+ |..|+..+||+||
T Consensus 352 ~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li 431 (857)
T PLN03077 352 KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALI 431 (857)
T ss_pred CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 688999999999999999999999999999999999999999999999999999999999999988 8899999999999
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcccc
Q 003913 479 ESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKE 558 (787)
Q Consensus 479 ~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~ 558 (787)
++|+++|++++|.++|++|.+ +|.++|++||.+|+++|+.++|+.+|++|.. + +.|+
T Consensus 432 ~~y~k~g~~~~A~~vf~~m~~-----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~--~~pd--------------- 488 (857)
T PLN03077 432 EMYSKCKCIDKALEVFHNIPE-----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-T--LKPN--------------- 488 (857)
T ss_pred HHHHHcCCHHHHHHHHHhCCC-----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-C--CCCC---------------
Confidence 999999999999999999864 4778999999999999999999999999985 4 3443
Q ss_pred cccccccCCchHHHHHHHHHHhhhhhhccchhhcceeEE----EEEccCCcccHHHHHHHHHHchhhcCCCccccCCCCC
Q 003913 559 VKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR----FQFNENSRMHSVLRRYLYDQYHEWLHPSFKVSDGNDD 634 (787)
Q Consensus 559 ~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~----~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~ 634 (787)
..+|.+++.+|+..|+++.+++++. .++.+ +...++.|.++|.++|++++|...+... .
T Consensus 489 --------------~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~-~~~~~naLi~~y~k~G~~~~A~~~f~~~-~- 551 (857)
T PLN03077 489 --------------SVTLIAALSACARIGALMCGKEIHAHVLRTGIGF-DGFLPNALLDLYVRCGRMNYAWNQFNSH-E- 551 (857)
T ss_pred --------------HhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCc-cceechHHHHHHHHcCCHHHHHHHHHhc-C-
Confidence 5777888888888888877777765 33333 4556667778888888888877777554 2
Q ss_pred cceEEeeeccchHHHHHHhhccCcccccccchhhcCChhHHHHHhhcCCcccCCCcEEEEccCCHHHHHHHHHHHhhC-C
Q 003913 635 IPYKYSTISHPYFCFYADKFWPKGRLVIPKLIHRWLTPRALAYWFMYGGHRTSVGDILLKLKVSSEGIALVFKTLKAR-S 713 (787)
Q Consensus 635 ~p~~~~t~~~~~~~~~~~g~~~~a~~~~~~mi~~gl~P~~lay~~m~~g~~~~~g~~~~~~~g~~~e~~~l~~~l~~~-g 713 (787)
| +..+|+..+.+|+.+|..++|+++|.+|++.|+.||..||+.++.+ |++.|.++|+..+++.|..+ |
T Consensus 552 -~-d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a---------~~~~g~v~ea~~~f~~M~~~~g 620 (857)
T PLN03077 552 -K-DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCA---------CSRSGMVTQGLEYFHSMEEKYS 620 (857)
T ss_pred -C-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH---------HhhcChHHHHHHHHHHHHHHhC
Confidence 2 2445666666788888888888888888888888888888888877 66777888888888888744 8
Q ss_pred CceEEE
Q 003913 714 LDCRVK 719 (787)
Q Consensus 714 l~~~~~ 719 (787)
++|++.
T Consensus 621 i~P~~~ 626 (857)
T PLN03077 621 ITPNLK 626 (857)
T ss_pred CCCchH
Confidence 887753
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.5e-64 Score=584.65 Aligned_cols=560 Identities=15% Similarity=0.122 Sum_probs=471.5
Q ss_pred HHHHHhhccCCCcchhhHHHHHHhhccccCCcchHHHHH--HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHH
Q 003913 114 AKLAWLCKELPSHKGGTLVRILNAQKKWLRQEDGTYLAV--HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMG 191 (787)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~t~~~~--~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~ 191 (787)
.++..+++.+....+..+++.|... .++.||..||+.+ +|++.++++.|.++|..|.+.| +.||..+||.|+++|+
T Consensus 92 ~~i~~l~~~g~~~~Al~~f~~m~~~-~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-~~~~~~~~n~Li~~y~ 169 (697)
T PLN03081 92 SQIEKLVACGRHREALELFEILEAG-CPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG-FEPDQYMMNRVLLMHV 169 (697)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhc-CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHh
Confidence 5566677778888888888877643 2477999999888 8889999999999999999998 8899999999999999
Q ss_pred ccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCC
Q 003913 192 KERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGL 271 (787)
Q Consensus 192 ~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~ 271 (787)
++|++++|.++|++|++ ||.++||++|.+|+ +.|++++|+++|++|.+. |+.||..||+.++.+|+..
T Consensus 170 k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~---~~g~~~~A~~lf~~M~~~-g~~p~~~t~~~ll~a~~~~---- 237 (697)
T PLN03081 170 KCGMLIDARRLFDEMPE----RNLASWGTIIGGLV---DAGNYREAFALFREMWED-GSDAEPRTFVVMLRASAGL---- 237 (697)
T ss_pred cCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHH---HCcCHHHHHHHHHHHHHh-CCCCChhhHHHHHHHHhcC----
Confidence 99999999999999975 79999999999999 899999999999999986 8999999999999999986
Q ss_pred ChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 003913 272 SKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDA 351 (787)
Q Consensus 272 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 351 (787)
|.++.+.+++..+.+.|+.||..+|+.++ .+|++.|+.++|.++|++|. .+|.++||+||.+|++.|++++|
T Consensus 238 --~~~~~~~~l~~~~~~~g~~~d~~~~n~Li--~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA 309 (697)
T PLN03081 238 --GSARAGQQLHCCVLKTGVVGDTFVSCALI--DMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEA 309 (697)
T ss_pred --CcHHHHHHHHHHHHHhCCCccceeHHHHH--HHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHH
Confidence 68999999999999999999999999998 88999999999999999985 46899999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003913 352 EKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVET 431 (787)
Q Consensus 352 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 431 (787)
.++|++|.+.|+.||..||++++.+|++.|++++|.+++.+|.+.|+.||..+|++||.+|++.|++++|.++|++|.
T Consensus 310 ~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-- 387 (697)
T PLN03081 310 LCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-- 387 (697)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHH
Q 003913 432 GMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE-KCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSC 510 (787)
Q Consensus 432 g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~ 510 (787)
.||..+||+||.+|++.|+.++|.++|++|.+ |+.||..||+++|.+|++.|.+++|.++|+.|.+...+.|+..+|
T Consensus 388 --~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y 465 (697)
T PLN03081 388 --RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHY 465 (697)
T ss_pred --CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccch
Confidence 47889999999999999999999999999988 999999999999999999999999999999998753389999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhhhhccchh
Q 003913 511 NIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEK 590 (787)
Q Consensus 511 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~ 590 (787)
++|+.+|++.|++++|.+++++|. ..|+ ..+|++|+.+|+.+|+++
T Consensus 466 ~~li~~l~r~G~~~eA~~~~~~~~-----~~p~-----------------------------~~~~~~Ll~a~~~~g~~~ 511 (697)
T PLN03081 466 ACMIELLGREGLLDEAYAMIRRAP-----FKPT-----------------------------VNMWAALLTACRIHKNLE 511 (697)
T ss_pred HhHHHHHHhcCCHHHHHHHHHHCC-----CCCC-----------------------------HHHHHHHHHHHHHcCCcH
Confidence 999999999999999999988763 3444 678999999999999999
Q ss_pred hcceeEE--EEEccCCcccHHHHHHHHHHchhhcCCCccc----cCCCCCcceE-EeeeccchHH-HHHHh-------hc
Q 003913 591 RKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSFKV----SDGNDDIPYK-YSTISHPYFC-FYADK-------FW 655 (787)
Q Consensus 591 ~a~~~~~--~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~----~~~~~~~p~~-~~t~~~~~~~-~~~~g-------~~ 655 (787)
.|+.+++ ++++|++...|+.|+++|++.|+|++|.+.+ .++..+.|.. |..+...... ...+. -+
T Consensus 512 ~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~ 591 (697)
T PLN03081 512 LGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIY 591 (697)
T ss_pred HHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHH
Confidence 9999887 7889999999999999999999999998887 3555566653 4443211111 11222 23
Q ss_pred cCcccccccchhhcCChhHHHHHhhcCCcccCCCcEEEEccCCHHHHHHHHHHHhh-C-CCceEEEecCcEEEEEEeCCc
Q 003913 656 PKGRLVIPKLIHRWLTPRALAYWFMYGGHRTSVGDILLKLKVSSEGIALVFKTLKA-R-SLDCRVKKKGRVFWIGFLGSN 733 (787)
Q Consensus 656 ~~a~~~~~~mi~~gl~P~~lay~~m~~g~~~~~g~~~~~~~g~~~e~~~l~~~l~~-~-gl~~~~~~~~~~~~i~~~~~~ 733 (787)
....++..+|.+.|..||.-.. +.|-.-+.....++.| .|-+.+.-.|-. . |-..+|.|+ .|||-++|+
T Consensus 592 ~~l~~l~~~~~~~gy~~~~~~~--~~~~~~~~~~~~~~~h----sekla~a~~l~~~~~~~~i~i~kn---lr~c~dch~ 662 (697)
T PLN03081 592 QKLDELMKEISEYGYVAEENEL--LPDVDEDEEKVSGRYH----SEKLAIAFGLINTSEWTPLQITQS---HRICKDCHK 662 (697)
T ss_pred HHHHHHHHHHHHcCCCCCcchh--hccccHHHHHHHHHhc----cHHHHHHhhCccCCCCCeEEEecC---CEECCCchh
Confidence 3334567788889999986432 2221101111122222 344444444443 3 777777777 899999999
Q ss_pred hHHHHHhcc
Q 003913 734 STLFWKLIE 742 (787)
Q Consensus 734 ~~~~~~lv~ 742 (787)
..+|++.|.
T Consensus 663 ~~k~~s~~~ 671 (697)
T PLN03081 663 VIKFIALVT 671 (697)
T ss_pred hHHHHhhhc
Confidence 999998764
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.2e-60 Score=553.91 Aligned_cols=519 Identities=14% Similarity=0.132 Sum_probs=463.3
Q ss_pred cchHHHHH--HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHH
Q 003913 145 EDGTYLAV--HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILI 222 (787)
Q Consensus 145 ~~~t~~~~--~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li 222 (787)
+..+++.+ .+.+.|++++|+++|++|...+.+.||..+|++++.+|++.++++.|..++..|.+.|+.||..+||.||
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li 165 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL 165 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 33444444 7788999999999999999876678999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHH
Q 003913 223 VAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLI 302 (787)
Q Consensus 223 ~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 302 (787)
.+|+ +.|++++|.++|++|. .||.++||++|.+|++. |++++|.++|++|.+.|+.|+..+|+.++
T Consensus 166 ~~y~---k~g~~~~A~~lf~~m~-----~~~~~t~n~li~~~~~~------g~~~~A~~lf~~M~~~g~~p~~~t~~~ll 231 (697)
T PLN03081 166 LMHV---KCGMLIDARRLFDEMP-----ERNLASWGTIIGGLVDA------GNYREAFALFREMWEDGSDAEPRTFVVML 231 (697)
T ss_pred HHHh---cCCCHHHHHHHHhcCC-----CCCeeeHHHHHHHHHHC------cCHHHHHHHHHHHHHhCCCCChhhHHHHH
Confidence 9999 8999999999999995 38999999999999997 79999999999999999999999999998
Q ss_pred HHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 003913 303 WLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGE 382 (787)
Q Consensus 303 ~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 382 (787)
.++++.|..+.+.+++..|.+.|+.||..+|++||++|++.|++++|.++|++|.+ +|+++||+||.+|++.|+
T Consensus 232 --~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~ 305 (697)
T PLN03081 232 --RASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGY 305 (697)
T ss_pred --HHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCC
Confidence 88999999999999999999999999999999999999999999999999999964 488999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003913 383 FMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSE 462 (787)
Q Consensus 383 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~ 462 (787)
.++|.++|++|.+.|+.||..||+++|.+|++.|++++|.+++.+|.+.|+.||..+|++||++|+++|++++|.++|++
T Consensus 306 ~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~ 385 (697)
T PLN03081 306 SEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDR 385 (697)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCH
Q 003913 463 CLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIES 542 (787)
Q Consensus 463 m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p 542 (787)
|. .||..+||+||.+|++.|+.++|+++|++|.+.| +.||.+||+++|.+|++.|++++|.++|+.|.+. +++.|
T Consensus 386 m~---~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g-~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~-~g~~p 460 (697)
T PLN03081 386 MP---RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEG-VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEN-HRIKP 460 (697)
T ss_pred CC---CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh-cCCCC
Confidence 96 5899999999999999999999999999999999 8999999999999999999999999999999862 33555
Q ss_pred HHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhhhhccchhhcceeEE-EEEccCCcccHHHHHHHHHHchhh
Q 003913 543 AWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR-FQFNENSRMHSVLRRYLYDQYHEW 621 (787)
Q Consensus 543 ~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~-~~~~p~~~~~~~~l~~~y~~~g~~ 621 (787)
+ ..+|+.++.++++.|++++|.++++ ....| +...|..|.+.|...|++
T Consensus 461 ~-----------------------------~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p-~~~~~~~Ll~a~~~~g~~ 510 (697)
T PLN03081 461 R-----------------------------AMHYACMIELLGREGLLDEAYAMIRRAPFKP-TVNMWAALLTACRIHKNL 510 (697)
T ss_pred C-----------------------------ccchHhHHHHHHhcCCHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCc
Confidence 4 5789999999999999999999887 66666 455688899999999999
Q ss_pred cCCCccccCCCCCcceEEeeeccchHHHHHHhhccCcccccccchhhcCChhHHHHHhhcCCccc--CCCcEE-EEccCC
Q 003913 622 LHPSFKVSDGNDDIPYKYSTISHPYFCFYADKFWPKGRLVIPKLIHRWLTPRALAYWFMYGGHRT--SVGDIL-LKLKVS 698 (787)
Q Consensus 622 ~~A~~~~~~~~~~~p~~~~t~~~~~~~~~~~g~~~~a~~~~~~mi~~gl~P~~lay~~m~~g~~~--~~g~~~-~~~~g~ 698 (787)
+.|...+++..+..|....+|...+..|+..|.+++|.+++..|.++|+.+..-.=|+-+++... ..|+.. -....-
T Consensus 511 ~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i 590 (697)
T PLN03081 511 ELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREI 590 (697)
T ss_pred HHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHH
Confidence 99888887777888887788888889999999999999999999999997554444544443210 111110 111123
Q ss_pred HHHHHHHHHHHhhCCCceEE
Q 003913 699 SEGIALVFKTLKARSLDCRV 718 (787)
Q Consensus 699 ~~e~~~l~~~l~~~gl~~~~ 718 (787)
++....+...|+..|..|..
T Consensus 591 ~~~l~~l~~~~~~~gy~~~~ 610 (697)
T PLN03081 591 YQKLDELMKEISEYGYVAEE 610 (697)
T ss_pred HHHHHHHHHHHHHcCCCCCc
Confidence 45566777777777887763
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=4.9e-27 Score=285.01 Aligned_cols=519 Identities=13% Similarity=0.047 Sum_probs=405.3
Q ss_pred HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCC
Q 003913 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQG 232 (787)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g 232 (787)
.+.+.|++++|.++|+.+.+.. +.+...+..+...+...|++++|.+.|+.+.+.... +...+..++..+. +.|
T Consensus 372 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~---~~~ 445 (899)
T TIGR02917 372 AYLALGDFEKAAEYLAKATELD--PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYL---RSG 445 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHH---hcC
Confidence 5667788888888888777664 446667777777777888888888888877765422 2345556666777 788
Q ss_pred CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCC
Q 003913 233 CLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNID 312 (787)
Q Consensus 233 ~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~ 312 (787)
++++|+.+++++... .+++..++..+...+... |++++|...|+++.+.... +...+..+. ..+...|+
T Consensus 446 ~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~------~~~~~A~~~~~~a~~~~~~-~~~~~~~la--~~~~~~g~ 514 (899)
T TIGR02917 446 QFDKALAAAKKLEKK--QPDNASLHNLLGAIYLGK------GDLAKAREAFEKALSIEPD-FFPAAANLA--RIDIQEGN 514 (899)
T ss_pred CHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHHhC------CCHHHHHHHHHHHHhhCCC-cHHHHHHHH--HHHHHCCC
Confidence 888888888888763 455666777777777765 6899999999988876533 233333333 66778888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 003913 313 KERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFRE 392 (787)
Q Consensus 313 ~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 392 (787)
+++|.+.|+++.... +.+..++..+...+.+.|+.++|..+++++.+.+.. +...+..++..|.+.|++++|..++++
T Consensus 515 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 592 (899)
T TIGR02917 515 PDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ-EIEPALALAQYYLGKGQLKKALAILNE 592 (899)
T ss_pred HHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999888753 336678888889999999999999999998877643 567788899999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q 003913 393 MQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRT 472 (787)
Q Consensus 393 m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~ 472 (787)
+.+. .+.+..+|..+..+|...|++++|...++++.+.. +.+...+..+..+|.+.|++++|..+|+.+.+..+.+..
T Consensus 593 ~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 670 (899)
T TIGR02917 593 AADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTE 670 (899)
T ss_pred HHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Confidence 8875 34577889999999999999999999999998754 446778889999999999999999999999887677889
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHH
Q 003913 473 IYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVL 552 (787)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~ 552 (787)
+|..++..+...|++++|.++++.+.+.+ +++...+..+...+.+.|++++|.+.|+++.+.+ +++..+..+..++
T Consensus 671 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~ 746 (899)
T TIGR02917 671 AQIGLAQLLLAAKRTESAKKIAKSLQKQH--PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRAL 746 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHH
Confidence 99999999999999999999999999885 5678888999999999999999999999998754 4444433333332
Q ss_pred hhcccc------cccccccCCchHHHHHHHHHHhhhhhhccchhhcceeEE--EEEccCCcccHHHHHHHHHHchhhcCC
Q 003913 553 SLNRKE------VKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHP 624 (787)
Q Consensus 553 ~l~~~~------~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--~~~~p~~~~~~~~l~~~y~~~g~~~~A 624 (787)
...... +..... ..+. +..++..+...+...|+.+.|...++ ++..|+++..+..++.+|...|+ .+|
T Consensus 747 ~~~g~~~~A~~~~~~~l~-~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A 822 (899)
T TIGR02917 747 LASGNTAEAVKTLEAWLK-THPN--DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRA 822 (899)
T ss_pred HHCCCHHHHHHHHHHHHH-hCCC--CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHH
Confidence 211110 000000 0111 35778888889999999999999988 77889999999999999999999 888
Q ss_pred CccccCCCCCcceEEeeeccchHHHHHHhhccCcccccccchhhcCChhHHHHHhhcCCcccCCCcEEEEccCCHHHHHH
Q 003913 625 SFKVSDGNDDIPYKYSTISHPYFCFYADKFWPKGRLVIPKLIHRWLTPRALAYWFMYGGHRTSVGDILLKLKVSSEGIAL 704 (787)
Q Consensus 625 ~~~~~~~~~~~p~~~~t~~~~~~~~~~~g~~~~a~~~~~~mi~~gl~P~~lay~~m~~g~~~~~g~~~~~~~g~~~e~~~ 704 (787)
...+.+.....|.....+...+..+...|.+++|.+.+.++++.+.. +..+|..+... +...|..+++..
T Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~---------~~~~g~~~~A~~ 892 (899)
T TIGR02917 823 LEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALA---------LLATGRKAEARK 892 (899)
T ss_pred HHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHH---------HHHcCCHHHHHH
Confidence 88888888888877777777778889999999999999999987654 67777777777 445599999999
Q ss_pred HHHHHh
Q 003913 705 VFKTLK 710 (787)
Q Consensus 705 l~~~l~ 710 (787)
+++.|.
T Consensus 893 ~~~~~~ 898 (899)
T TIGR02917 893 ELDKLL 898 (899)
T ss_pred HHHHHh
Confidence 998874
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=1.2e-25 Score=272.67 Aligned_cols=546 Identities=12% Similarity=0.024 Sum_probs=385.7
Q ss_pred hhHhhhhCCChhhHHHhhhchh-------hHHHHHHHHhhccCCCcchhhHHHHHHhhccccCCcchHHH-HH--HHhhc
Q 003913 88 GSEMRHLGEPVVEVIELEELPE-------QWRRAKLAWLCKELPSHKGGTLVRILNAQKKWLRQEDGTYL-AV--HCMRI 157 (787)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~-------~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~t~~-~~--~~~~~ 157 (787)
.......+..+.+...+..... .| ..+...+...+..+.+..+++.... ..|+..... .+ .+...
T Consensus 336 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~l~~~~~~~ 410 (899)
T TIGR02917 336 ASIQLRLGRVDEAIATLSPALGLDPDDPAAL-SLLGEAYLALGDFEKAAEYLAKATE----LDPENAAARTQLGISKLSQ 410 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHH-HHHHHHHHHCCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHhC
Confidence 3445556666666666655421 11 1222333445555556555554432 234433222 22 55677
Q ss_pred CChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHHHH
Q 003913 158 RENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEA 237 (787)
Q Consensus 158 ~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~~A 237 (787)
|++++|.+.++.+.+.. +........++..+.+.|++++|..+++.+.... .++..+|+.+...+. ..|++++|
T Consensus 411 ~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~---~~~~~~~A 484 (899)
T TIGR02917 411 GDPSEAIADLETAAQLD--PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYL---GKGDLAKA 484 (899)
T ss_pred CChHHHHHHHHHHHhhC--CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHH---hCCCHHHH
Confidence 88888888888887765 3344556667778888888888888888887653 346677888888887 78888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHH
Q 003913 238 CSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERIS 317 (787)
Q Consensus 238 ~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~ 317 (787)
.+.|+++.+. -+.+...+..+...+... |++++|..+++.+...+.. +..++..+. ..+...|+.++|.
T Consensus 485 ~~~~~~a~~~--~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~~~~~~~~-~~~~~~~l~--~~~~~~~~~~~A~ 553 (899)
T TIGR02917 485 REAFEKALSI--EPDFFPAAANLARIDIQE------GNPDDAIQRFEKVLTIDPK-NLRAILALA--GLYLRTGNEEEAV 553 (899)
T ss_pred HHHHHHHHhh--CCCcHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHhCcC-cHHHHHHHH--HHHHHcCCHHHHH
Confidence 8888888763 222334455555555554 5888888888888776542 344444444 6666778888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 003913 318 LLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERL 397 (787)
Q Consensus 318 ~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 397 (787)
..++++.+.+ +.+...+..+...|.+.|++++|..+++.+.+... .+..+|..+..+|.+.|++++|...|+++.+..
T Consensus 554 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 631 (899)
T TIGR02917 554 AWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ 631 (899)
T ss_pred HHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8888887653 33556677788888888888888888888876553 366778888888888888888888888887653
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 003913 398 GSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIY 477 (787)
Q Consensus 398 ~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~l 477 (787)
+.+...+..+...+.+.|++++|..+++++.+.. +.+..++..++..+...|++++|..+++.+.+..+.+...+..+
T Consensus 632 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 709 (899)
T TIGR02917 632 -PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELE 709 (899)
T ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHH
Confidence 3356677788888888888888888888887643 44577888888888888888888888888877666777788888
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhccc
Q 003913 478 LESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRK 557 (787)
Q Consensus 478 i~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~ 557 (787)
...|.+.|++++|.+.|+++...+ |+..++..+..++.+.|++++|.+.++++.+.. +.++..+..+..+.....+
T Consensus 710 ~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~ 785 (899)
T TIGR02917 710 GDLYLRQKDYPAAIQAYRKALKRA---PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKD 785 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC---CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 888888888888888888888764 555777778888888888888888888887632 2333333333332221111
Q ss_pred c------cccccccCCchHHHHHHHHHHhhhhhhccchhhcceeEE--EEEccCCcccHHHHHHHHHHchhhcCCCcccc
Q 003913 558 E------VKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSFKVS 629 (787)
Q Consensus 558 ~------~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~ 629 (787)
. .+..... .+ .+..++..+...+...|+ .+|...++ +.+.|+++..+..++.+|...|++++|...+.
T Consensus 786 ~~~A~~~~~~~~~~--~p-~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 861 (899)
T TIGR02917 786 YDKAIKHYRTVVKK--AP-DNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLR 861 (899)
T ss_pred HHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 0 0000011 11 136788889999999998 77888877 78889999999999999999999999999999
Q ss_pred CCCCCcceEEeeeccchHHHHHHhhccCcccccccchh
Q 003913 630 DGNDDIPYKYSTISHPYFCFYADKFWPKGRLVIPKLIH 667 (787)
Q Consensus 630 ~~~~~~p~~~~t~~~~~~~~~~~g~~~~a~~~~~~mi~ 667 (787)
++....|....++...+..+...|.+++|++++.+|++
T Consensus 862 ~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 862 KAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred HHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 99988888777888888899999999999999988763
No 9
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=1.1e-20 Score=194.61 Aligned_cols=446 Identities=12% Similarity=0.075 Sum_probs=262.4
Q ss_pred HhhccCCCcchhhHHHHHHhhccccCCcchHHHHHHHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChh
Q 003913 118 WLCKELPSHKGGTLVRILNAQKKWLRQEDGTYLAVHCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFA 197 (787)
Q Consensus 118 ~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~t~~~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~ 197 (787)
-.-+++...+++....++-.+. ....+..-..........+.+...+--....+.. +.-..+|..+...+-..|++.
T Consensus 57 ~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~--~q~ae~ysn~aN~~kerg~~~ 133 (966)
T KOG4626|consen 57 RLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN--PQGAEAYSNLANILKERGQLQ 133 (966)
T ss_pred HHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc--chHHHHHHHHHHHHHHhchHH
Confidence 3445566666666555554332 1111111111113334445555444444444432 345678888899999999999
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHH
Q 003913 198 KCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQ 277 (787)
Q Consensus 198 ~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~ 277 (787)
+|+.+++.+.+.... .+..|..+-.++. ..|+.+.|.+.|.+..+ +.|+.+...+-+.-+.+.. |++.
T Consensus 134 ~al~~y~~aiel~p~-fida~inla~al~---~~~~~~~a~~~~~~alq---lnP~l~ca~s~lgnLlka~-----Grl~ 201 (966)
T KOG4626|consen 134 DALALYRAAIELKPK-FIDAYINLAAALV---TQGDLELAVQCFFEALQ---LNPDLYCARSDLGNLLKAE-----GRLE 201 (966)
T ss_pred HHHHHHHHHHhcCch-hhHHHhhHHHHHH---hcCCCcccHHHHHHHHh---cCcchhhhhcchhHHHHhh-----cccc
Confidence 999999999886432 5678888888888 78999999999998887 6788877766666666554 4777
Q ss_pred HHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHH
Q 003913 278 QAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEG-KEVLLSVLRVCAKEGDVEDAEKTWL 356 (787)
Q Consensus 278 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~~~~ 356 (787)
+|...+.+.++....- ...++-| +..+...|+...|+.-|++..+ +.|+ ...|-.|-..|...+.++.|...+.
T Consensus 202 ea~~cYlkAi~~qp~f-AiawsnL--g~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~ 276 (966)
T KOG4626|consen 202 EAKACYLKAIETQPCF-AIAWSNL--GCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYL 276 (966)
T ss_pred hhHHHHHHHHhhCCce-eeeehhc--chHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHH
Confidence 7777777766543210 1112222 2444555666666666665554 3444 2355566666666666666666665
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 003913 357 RLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSAS-VPAYHKIIELLCKAEETELTESLMKEFVETGMKP 435 (787)
Q Consensus 357 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 435 (787)
+.....+. ..+++..|...|-..|.++-|+..|++.++. .|+ ...|+.|..++-..|++.+|.+.+.+.+.. .|
T Consensus 277 rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p 351 (966)
T KOG4626|consen 277 RALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CP 351 (966)
T ss_pred HHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CC
Confidence 55544321 3445555555566666666666666665553 333 345666666666666666666666665552 23
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC-HHHHHHH
Q 003913 436 L-MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVN-TRSCNII 513 (787)
Q Consensus 436 ~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~-~~t~~~l 513 (787)
+ ..+.+.|...|...|.+++|..+|....+-.+--...+|.|...|-++|++++|+..+++.++. .|+ ..+|+.+
T Consensus 352 ~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI---~P~fAda~~Nm 428 (966)
T KOG4626|consen 352 NHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI---KPTFADALSNM 428 (966)
T ss_pred ccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc---CchHHHHHHhc
Confidence 3 4455666666666666666666666655533333455666666666666666666666666553 344 3456666
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhhhhccchhhcc
Q 003913 514 LSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKR 593 (787)
Q Consensus 514 i~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~ 593 (787)
...|-..|+++.|+..+.+.++ ++|.. +...+.|...+...|++.+|+
T Consensus 429 Gnt~ke~g~v~~A~q~y~rAI~----~nPt~----------------------------AeAhsNLasi~kDsGni~~AI 476 (966)
T KOG4626|consen 429 GNTYKEMGDVSAAIQCYTRAIQ----INPTF----------------------------AEAHSNLASIYKDSGNIPEAI 476 (966)
T ss_pred chHHHHhhhHHHHHHHHHHHHh----cCcHH----------------------------HHHHhhHHHHhhccCCcHHHH
Confidence 6666666666666666666554 55553 455556666666666666666
Q ss_pred eeEE--EEEccCCcccHHHHHHHHHHchhhcC
Q 003913 594 HMIR--FQFNENSRMHSVLRRYLYDQYHEWLH 623 (787)
Q Consensus 594 ~~~~--~~~~p~~~~~~~~l~~~y~~~g~~~~ 623 (787)
..++ +.++|+.+.+|-.+.+...---+|.+
T Consensus 477 ~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 477 QSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 6655 56666666666555555444444444
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.88 E-value=1.6e-18 Score=211.70 Aligned_cols=393 Identities=9% Similarity=-0.002 Sum_probs=231.5
Q ss_pred hhhccCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHH-----------
Q 003913 305 HSYQDNIDKERISLLKKEMQQAGFEE-GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIP-TPAFV----------- 371 (787)
Q Consensus 305 ~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~----------- 371 (787)
..+...|++++|+..|++..+. .| +..++..+..++.+.|++++|...|++..+...... ...|.
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRA--NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 4456677888888888877764 34 566777777888888888888888888777654321 11121
Q ss_pred -HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003913 372 -YKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNL 450 (787)
Q Consensus 372 -~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~ 450 (787)
.+...+.+.|++++|...|++..... +.+...+..+...+...|++++|.+.|+++.+.. +.+..++..+...|. .
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~ 431 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-Q 431 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-h
Confidence 12445667788888888888887653 2355666777788888888888888888877642 223444444444432 2
Q ss_pred CCHHHHHHHHHHHHhcC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCC
Q 003913 451 GMHDRLHLAFSECLEKC---------RPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSG 521 (787)
Q Consensus 451 g~~~~a~~~~~~m~~~~---------~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g 521 (787)
+..++|...++.+.... ......+..+...+...|++++|++.|++..+.. +-+...+..+...|.+.|
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcC
Confidence 23444444433322100 0001122333444444555555555555555442 223444445555555555
Q ss_pred CHHHHHHHHHHHHHcCCccCHHHHHHHHHH--------------------------------------Hhhccccc----
Q 003913 522 DFVKAEKIYDLMCLKKYEIESAWMEKLDYV--------------------------------------LSLNRKEV---- 559 (787)
Q Consensus 522 ~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~--------------------------------------~~l~~~~~---- 559 (787)
++++|+..++++.+.. +-+|...-.+... +.+.+.+.
T Consensus 510 ~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 510 QRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 5555555555554311 1122211000000 00000000
Q ss_pred --c--cccccCCchHHHHHHHHHHhhhhhhccchhhcceeEE--EEEccCCcccHHHHHHHHHHchhhcCCCccccCCCC
Q 003913 560 --K--KPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSFKVSDGND 633 (787)
Q Consensus 560 --~--~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~ 633 (787)
+ ..+. ..+. +...+..|...+...|+.+.|+..++ +..+|+++.++..++.+|...|++++|...+.....
T Consensus 589 ~~eA~~~l~-~~p~--~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 589 EAEAEALLR-QQPP--STRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHHHHHH-hCCC--CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 0 0000 0011 23456677888899999999999988 788999999999999999999999999999987777
Q ss_pred CcceEEeeeccchHHHHHHhhccCcccccccchhhcC--Ch---hHHHHHhhcCCcccCCCcEEEEccCCHHHHHHHHHH
Q 003913 634 DIPYKYSTISHPYFCFYADKFWPKGRLVIPKLIHRWL--TP---RALAYWFMYGGHRTSVGDILLKLKVSSEGIALVFKT 708 (787)
Q Consensus 634 ~~p~~~~t~~~~~~~~~~~g~~~~a~~~~~~mi~~gl--~P---~~lay~~m~~g~~~~~g~~~~~~~g~~~e~~~l~~~ 708 (787)
..|............+...|.+++|.+++.+.+...- .| +.+.+.-+.+- ....|..++|...+..
T Consensus 666 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~---------~~~~G~~~~A~~~y~~ 736 (1157)
T PRK11447 666 TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARF---------EAQTGQPQQALETYKD 736 (1157)
T ss_pred cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHH---------HHHcCCHHHHHHHHHH
Confidence 7777666666667778888999999999999886532 22 22222212111 2334778888877665
Q ss_pred Hhh-CCCceE
Q 003913 709 LKA-RSLDCR 717 (787)
Q Consensus 709 l~~-~gl~~~ 717 (787)
-.. .|+.|.
T Consensus 737 Al~~~~~~~~ 746 (1157)
T PRK11447 737 AMVASGITPT 746 (1157)
T ss_pred HHhhcCCCCC
Confidence 543 366654
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.86 E-value=1.5e-17 Score=203.32 Aligned_cols=566 Identities=11% Similarity=0.008 Sum_probs=363.0
Q ss_pred hhhHHHHHHHHhhccCCCcchhhHHHHHHhhccccCCcchHHHH---HHHhhcCChhHHHHHHHHHHhcCCCccCHHHH-
Q 003913 108 PEQWRRAKLAWLCKELPSHKGGTLVRILNAQKKWLRQEDGTYLA---VHCMRIRENETGFRVYEWMMQQHWYRFDFALA- 183 (787)
Q Consensus 108 ~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~t~~~---~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~- 183 (787)
|.+|--..+...-..++.+.+...+..+.. +.|+...... ..+.+.|+.++|.+.++...+.. +.+....
T Consensus 27 ~~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~----~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~ 100 (1157)
T PRK11447 27 AQQQLLEQVRLGEATHREDLVRQSLYRLEL----IDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRS 100 (1157)
T ss_pred HHHHHHHHHHHHHhhCChHHHHHHHHHHHc----cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHH
Confidence 344433333322334444444444444432 4454433322 26668899999999999888875 3333322
Q ss_pred ---------------HHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHH-HHHHHhcCCcCCCHHHHHHHHHHHHHh
Q 003913 184 ---------------TKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHI-LIVAYLSAPVQGCLDEACSIYNRMIQL 247 (787)
Q Consensus 184 ---------------~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~-li~~~~~~~~~g~~~~A~~l~~~m~~~ 247 (787)
..+...+.+.|++++|.+.|+...+.+ |+...... ....... ..|+.++|++.|+++.+.
T Consensus 101 ~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~--p~~~~la~~y~~~~~~--~~g~~~~A~~~L~~ll~~ 176 (1157)
T PRK11447 101 SRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA--PPELDLAVEYWRLVAK--LPAQRPEAINQLQRLNAD 176 (1157)
T ss_pred HHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC--CCChHHHHHHHHHHhh--CCccHHHHHHHHHHHHHh
Confidence 233446788899999999999988753 33322222 2222221 358899999999998874
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHH-----------------HhhhccC
Q 003913 248 GGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIW-----------------LHSYQDN 310 (787)
Q Consensus 248 ~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~-----------------~~~~~~~ 310 (787)
.|+.......+..+.... |+.++|...++++...........-.++-. +..+-..
T Consensus 177 ---~P~~~~~~~~LA~ll~~~-----g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~ 248 (1157)
T PRK11447 177 ---YPGNTGLRNTLALLLFSS-----GRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDG 248 (1157)
T ss_pred ---CCCCHHHHHHHHHHHHcc-----CCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCc
Confidence 465444333333333322 588899999998876432110000000000 0111222
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 003913 311 IDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIF 390 (787)
Q Consensus 311 g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 390 (787)
.....|...+.++....-.|+... .....++...|++++|...|++.++..+. +..++..|...|.+.|++++|+..|
T Consensus 249 ~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l 326 (1157)
T PRK11447 249 DSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQF 326 (1157)
T ss_pred hHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 223445555555444333333222 23345677899999999999999987653 7788999999999999999999999
Q ss_pred HHHHHcCCCC-CHHHHH------------HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003913 391 REMQERLGSA-SVPAYH------------KIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLH 457 (787)
Q Consensus 391 ~~m~~~g~~p-~~~t~~------------~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 457 (787)
++..+..... +...|. .....+.+.|++++|...|+++++.. +.+...+..+...|...|++++|+
T Consensus 327 ~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~ 405 (1157)
T PRK11447 327 EKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAE 405 (1157)
T ss_pred HHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 9988753221 112222 22346778999999999999999864 345778888999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-------CCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 003913 458 LAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTI-------GVNTRSCNIILSAYLSSGDFVKAEKIY 530 (787)
Q Consensus 458 ~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~-------~p~~~t~~~li~~~~~~g~~~~A~~~~ 530 (787)
+.|+++++..+.+...+..+...|. .++.++|+.+++.+.....- .-....+..+...+...|++++|++.|
T Consensus 406 ~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~ 484 (1157)
T PRK11447 406 RYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQ 484 (1157)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999866777888888888885 46789999999876543200 001234566778889999999999999
Q ss_pred HHHHHcCCccCHHHHHHHHHHH----------hhcccccccccccCCchHH-----------------------------
Q 003913 531 DLMCLKKYEIESAWMEKLDYVL----------SLNRKEVKKPVSLNLSSEQ----------------------------- 571 (787)
Q Consensus 531 ~~m~~~g~~~~p~~~~~l~~~~----------~l~~~~~~~~~~~~l~~~~----------------------------- 571 (787)
++.++.. +-+|...-.+..++ ...++.++ ..+-.++.
T Consensus 485 ~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~---~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~ 560 (1157)
T PRK11447 485 RQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQ---QKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQW 560 (1157)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhc
Confidence 9999732 11222222222211 11111111 00000000
Q ss_pred -----------HHHHHHHHhhhhhhccchhhcceeEEEEEccCCcccHHHHHHHHHHchhhcCCCccccCCCCCcceEEe
Q 003913 572 -----------RENLIGLLLGGLCIESDEKRKRHMIRFQFNENSRMHSVLRRYLYDQYHEWLHPSFKVSDGNDDIPYKYS 640 (787)
Q Consensus 572 -----------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~p~~~~ 640 (787)
....+..+...+...|+.+.|..+++ ..|.++..+..++.+|.+.|++++|...+.+.....|.+..
T Consensus 561 ~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~--~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~ 638 (1157)
T PRK11447 561 NSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR--QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNAD 638 (1157)
T ss_pred ChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH--hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 00011223445666677777776655 57888889999999999999999999999999998998877
Q ss_pred eeccchHHHHHHhhccCcccccccchhhcCChhHHHHHh-hcCCcccCCCcEEEEccCCHHHHHHHHHHHhhC
Q 003913 641 TISHPYFCFYADKFWPKGRLVIPKLIHRWLTPRALAYWF-MYGGHRTSVGDILLKLKVSSEGIALVFKTLKAR 712 (787)
Q Consensus 641 t~~~~~~~~~~~g~~~~a~~~~~~mi~~gl~P~~lay~~-m~~g~~~~~g~~~~~~~g~~~e~~~l~~~l~~~ 712 (787)
.+...+..+...|.+++|++.+.+.+.. .|+....+. +... ....|..+++..+++.+...
T Consensus 639 a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~---------~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 639 ARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALA---------WAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHH---------HHhCCCHHHHHHHHHHHhhh
Confidence 8888888899999999999999987753 454433222 2222 22348899999999987654
No 12
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=1.4e-18 Score=189.07 Aligned_cols=234 Identities=13% Similarity=0.066 Sum_probs=193.1
Q ss_pred HhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHH
Q 003913 304 LHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPT----PAFVYKMEAYAK 379 (787)
Q Consensus 304 ~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~ 379 (787)
+..+.+.|++++|..+|+++.+. -.++..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 192 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA 192 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh
Confidence 35666777788888888877764 2345678889999999999999999999999887654322 245667888899
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003913 380 IGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLA 459 (787)
Q Consensus 380 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~ 459 (787)
.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+-.....+++.++.+|++.|++++|...
T Consensus 193 ~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 271 (389)
T PRK11788 193 RGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEF 271 (389)
T ss_pred CCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999998763 2346678888899999999999999999998754222256788999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHc
Q 003913 460 FSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS---SGDFVKAEKIYDLMCLK 536 (787)
Q Consensus 460 ~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~---~g~~~~A~~~~~~m~~~ 536 (787)
++.+.+. .|+...+..++..|.+.|++++|..+|+++.+. .|+..+++.++..+.. .|+.++|+.++++|.++
T Consensus 272 l~~~~~~-~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~---~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 272 LRRALEE-YPGADLLLALAQLLEEQEGPEAAQALLREQLRR---HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred HHHHHHh-CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 9998874 456677799999999999999999999999886 4899999999988775 56999999999999998
Q ss_pred CCccCHH
Q 003913 537 KYEIESA 543 (787)
Q Consensus 537 g~~~~p~ 543 (787)
++.++|+
T Consensus 348 ~~~~~p~ 354 (389)
T PRK11788 348 QLKRKPR 354 (389)
T ss_pred HHhCCCC
Confidence 8888887
No 13
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.83 E-value=1.7e-17 Score=180.66 Aligned_cols=305 Identities=12% Similarity=0.142 Sum_probs=207.8
Q ss_pred HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC---HhHHHHHHHHHhcCC
Q 003913 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPS---EMTFHILIVAYLSAP 229 (787)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd---~~ty~~li~~~~~~~ 229 (787)
.....|+++.|...|..+.+.+ +.+..++..+...+.+.|++++|..+++.+...+..++ ...|..+...|.
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~--- 118 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL--- 118 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH---
Confidence 4446677788888888887764 45566777777777888888888888887776532221 245667777777
Q ss_pred cCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhcc
Q 003913 230 VQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQD 309 (787)
Q Consensus 230 ~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 309 (787)
+.|++++|+.+|+++.+. -.++..+++.+...+... |++++|.+.++.+.+.+..+....
T Consensus 119 ~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~~------------ 178 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDE--GDFAEGALQQLLEIYQQE------KDWQKAIDVAERLEKLGGDSLRVE------------ 178 (389)
T ss_pred HCCCHHHHHHHHHHHHcC--CcchHHHHHHHHHHHHHh------chHHHHHHHHHHHHHhcCCcchHH------------
Confidence 678888888888887763 234456666666666664 577777777777665443221100
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 003913 310 NIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEI 389 (787)
Q Consensus 310 ~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 389 (787)
....+..+...+.+.|++++|.+.++++.+.... +...+..+...|.+.|++++|.++
T Consensus 179 ---------------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~ 236 (389)
T PRK11788 179 ---------------------IAHFYCELAQQALARGDLDAARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEA 236 (389)
T ss_pred ---------------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 0112345566667777777777777777765432 455666777788888888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 003913 390 FREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRP 469 (787)
Q Consensus 390 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p 469 (787)
|+++...+......+++.++.+|+..|++++|...++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|
T Consensus 237 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~-~P 313 (389)
T PRK11788 237 LERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR-HP 313 (389)
T ss_pred HHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh-Cc
Confidence 888776532222456777778888888888888888887764 456566677788888888888888888877653 57
Q ss_pred CHHHHHHHHHHHHh---cCCHHHHHHHHHHhhhCCCCCCCHH
Q 003913 470 NRTIYGIYLESLKN---AGNIEKAEEIFNHMHSDQTIGVNTR 508 (787)
Q Consensus 470 ~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~~~~~p~~~ 508 (787)
+..+++.++..+.. .|+.++|..+|++|.+++ ++|+..
T Consensus 314 ~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~-~~~~p~ 354 (389)
T PRK11788 314 SLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ-LKRKPR 354 (389)
T ss_pred CHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH-HhCCCC
Confidence 77778877777664 457888888888888766 555554
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.81 E-value=1.7e-17 Score=171.28 Aligned_cols=367 Identities=14% Similarity=0.119 Sum_probs=303.2
Q ss_pred HHHHH--HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 003913 148 TYLAV--HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAY 225 (787)
Q Consensus 148 t~~~~--~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~ 225 (787)
+|.-+ .+...|+++.|+.+++.+++.. +..+..|..+..+|...|+.+.|...|.+..+. .|+.+...+-+..+
T Consensus 118 ~ysn~aN~~kerg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnL 193 (966)
T KOG4626|consen 118 AYSNLANILKERGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNL 193 (966)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHH
Confidence 44433 6778899999999999999975 557788999999999999999999999998874 58888877777777
Q ss_pred hcCCcCCCHHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHH
Q 003913 226 LSAPVQGCLDEACSIYNRMIQLGGYQPRPS-LHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWL 304 (787)
Q Consensus 226 ~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~-t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 304 (787)
.+ ..|++.+|-..|.+.++ ..|... .|+.|-..+-. . |+...|.+.|++.++.++.- .+.|--|-
T Consensus 194 lk--a~Grl~ea~~cYlkAi~---~qp~fAiawsnLg~~f~~-~-----Gei~~aiq~y~eAvkldP~f-~dAYiNLG-- 259 (966)
T KOG4626|consen 194 LK--AEGRLEEAKACYLKAIE---TQPCFAIAWSNLGCVFNA-Q-----GEIWLAIQHYEEAVKLDPNF-LDAYINLG-- 259 (966)
T ss_pred HH--hhcccchhHHHHHHHHh---hCCceeeeehhcchHHhh-c-----chHHHHHHHHHHhhcCCCcc-hHHHhhHH--
Confidence 65 58999999999999987 356533 34444333332 2 79999999999999876431 23444443
Q ss_pred hhhccCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh
Q 003913 305 HSYQDNIDKERISLLKKEMQQAGFEEG-KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEF 383 (787)
Q Consensus 305 ~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 383 (787)
..|...+.+++|...|.+... ..|+ .+++..+...|-..|.+|.|...+++.++..+. -...|+.|..++-..|++
T Consensus 260 nV~ke~~~~d~Avs~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V 336 (966)
T KOG4626|consen 260 NVYKEARIFDRAVSCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSV 336 (966)
T ss_pred HHHHHHhcchHHHHHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccch
Confidence 677778889999998887765 4676 467888888999999999999999999988754 468999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003913 384 MKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPL-MPSYINLTNMYLNLGMHDRLHLAFSE 462 (787)
Q Consensus 384 ~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~ 462 (787)
.+|...|.+...-.. -...+.+.|..+|...|.+++|..+|....+ +.|. ...++.|...|-+.|++++|...|++
T Consensus 337 ~ea~~cYnkaL~l~p-~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Yke 413 (966)
T KOG4626|consen 337 TEAVDCYNKALRLCP-NHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKE 413 (966)
T ss_pred HHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHH
Confidence 999999999887522 2356788999999999999999999999887 4554 56899999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCH
Q 003913 463 CLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIES 542 (787)
Q Consensus 463 m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p 542 (787)
.++-.+.-..+|+.+...|-..|+++.|.+.+.+.+..+ +.-...++.|...|-.+|+..+|+.-|+..++ ++|
T Consensus 414 alrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n--Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLk----lkP 487 (966)
T KOG4626|consen 414 ALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN--PTFAEAHSNLASIYKDSGNIPEAIQSYRTALK----LKP 487 (966)
T ss_pred HHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC--cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc----cCC
Confidence 987434446799999999999999999999999999864 33467999999999999999999999999986 777
Q ss_pred HH
Q 003913 543 AW 544 (787)
Q Consensus 543 ~~ 544 (787)
|.
T Consensus 488 Df 489 (966)
T KOG4626|consen 488 DF 489 (966)
T ss_pred CC
Confidence 74
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.78 E-value=8.4e-15 Score=168.20 Aligned_cols=368 Identities=11% Similarity=0.057 Sum_probs=261.3
Q ss_pred HhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCC
Q 003913 154 CMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGC 233 (787)
Q Consensus 154 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~ 233 (787)
+.+.|+++.|...|+..++. .|+...|..+..+|.+.|++++|++.++...+.... +...|..+-.+|. ..|+
T Consensus 137 ~~~~~~~~~Ai~~y~~al~~---~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~---~lg~ 209 (615)
T TIGR00990 137 AYRNKDFNKAIKLYSKAIEC---KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYD---GLGK 209 (615)
T ss_pred HHHcCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH---HcCC
Confidence 34567777777777776654 345556666666777777777777777776664311 3445666666666 5677
Q ss_pred HHHHHHHHHHHHHhCCCC---------------------------CC----HHHHHHHHHHHH---------c---C---
Q 003913 234 LDEACSIYNRMIQLGGYQ---------------------------PR----PSLHNSLFRALV---------S---K--- 267 (787)
Q Consensus 234 ~~~A~~l~~~m~~~~g~~---------------------------pd----~~t~~~ll~~~~---------~---~--- 267 (787)
+++|+..|......++.. |. .......+..+- . .
T Consensus 210 ~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (615)
T TIGR00990 210 YADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEE 289 (615)
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccc
Confidence 777765554332211111 11 000000000000 0 0
Q ss_pred CCC------------CChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCC-HHH
Q 003913 268 PGG------------LSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEG-KEV 334 (787)
Q Consensus 268 ~~~------------~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~t 334 (787)
.+. -..+.+++|...|+..++.+.........+...+..+...|++++|...|++..+. .|+ ...
T Consensus 290 ~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~ 367 (615)
T TIGR00990 290 TGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQS 367 (615)
T ss_pred cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHH
Confidence 000 00146889999999998876221233344445557788899999999999998874 565 557
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003913 335 LLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCK 414 (787)
Q Consensus 335 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 414 (787)
|..+...+...|++++|...|++..+.... +..+|..+...|...|++++|...|++..+.. +.+...|..+...+.+
T Consensus 368 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~ 445 (615)
T TIGR00990 368 YIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYK 445 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHH
Confidence 888889999999999999999999887643 67889999999999999999999999998763 3367788888999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH-------HHHHHHHHHHhcCCH
Q 003913 415 AEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRT-------IYGIYLESLKNAGNI 487 (787)
Q Consensus 415 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~-------~~~~li~~~~~~g~~ 487 (787)
.|++++|...|++.++.. +-+...++.+...+...|++++|...|+..++..+.+.. .++..+..+...|++
T Consensus 446 ~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~ 524 (615)
T TIGR00990 446 EGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDF 524 (615)
T ss_pred CCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhH
Confidence 999999999999998743 345788999999999999999999999998873222111 222233344457999
Q ss_pred HHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 488 EKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 488 ~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
++|.+++++..... +.+...+..+...+.+.|++++|+++|++..+
T Consensus 525 ~eA~~~~~kAl~l~--p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 525 IEAENLCEKALIID--PECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 99999999988864 44567899999999999999999999999886
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.78 E-value=9.4e-16 Score=176.01 Aligned_cols=400 Identities=10% Similarity=0.026 Sum_probs=289.7
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCH-HHHHHHHH
Q 003913 184 TKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRP-SLHNSLFR 262 (787)
Q Consensus 184 ~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~-~t~~~ll~ 262 (787)
......|.+.|++++|+..|++..+. .|+...|..+-.+|. +.|++++|++.+.+..+ +.|+. ..+..+-.
T Consensus 131 k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~---~l~~~~~Ai~~~~~al~---l~p~~~~a~~~~a~ 202 (615)
T TIGR00990 131 KEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHN---ALGDWEKVVEDTTAALE---LDPDYSKALNRRAN 202 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHH---HhCCHHHHHHHHHHHHH---cCCCCHHHHHHHHH
Confidence 34455678899999999999998874 578888999988998 89999999999999987 45654 45666666
Q ss_pred HHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcC---------------
Q 003913 263 ALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAG--------------- 327 (787)
Q Consensus 263 ~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g--------------- 327 (787)
++... |++++|..-|..+...+...+......+. ..+. ..+........+..
T Consensus 203 a~~~l------g~~~eA~~~~~~~~~~~~~~~~~~~~~~~--~~l~-----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~ 269 (615)
T TIGR00990 203 AYDGL------GKYADALLDLTASCIIDGFRNEQSAQAVE--RLLK-----KFAESKAKEILETKPENLPSVTFVGNYLQ 269 (615)
T ss_pred HHHHc------CCHHHHHHHHHHHHHhCCCccHHHHHHHH--HHHH-----HHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 66665 69999998887665443221111111111 0000 00111111111100
Q ss_pred ----------------CCCCH-HHHHHHHH---HHHhcCChHHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCChHH
Q 003913 328 ----------------FEEGK-EVLLSVLR---VCAKEGDVEDAEKTWLRLLESD-NGI-PTPAFVYKMEAYAKIGEFMK 385 (787)
Q Consensus 328 ----------------~~p~~-~t~~~li~---~~~~~g~~~~A~~~~~~m~~~~-~~~-~~~~~~~li~~~~~~g~~~~ 385 (787)
..|+. ..+..+.. -....+++++|.+.|+...+.+ ..| ....|+.+...+...|++++
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~e 349 (615)
T TIGR00990 270 SFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLE 349 (615)
T ss_pred HccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHH
Confidence 00000 00000000 0123468999999999998865 222 45678888999999999999
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003913 386 SLEIFREMQERLGSAS-VPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECL 464 (787)
Q Consensus 386 A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 464 (787)
|+..|++..+. .|+ ..+|..+...+...|++++|...|+++++.. +.+..+|..+...|...|++++|...|++.+
T Consensus 350 A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal 426 (615)
T TIGR00990 350 ALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSI 426 (615)
T ss_pred HHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999876 344 5688889999999999999999999998853 4457899999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHH
Q 003913 465 EKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAW 544 (787)
Q Consensus 465 ~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~ 544 (787)
+..+.+...|..+...+.+.|++++|+..|++..+.. +.+...|+.+...+...|++++|++.|++.++ +.|..
T Consensus 427 ~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~----l~p~~ 500 (615)
T TIGR00990 427 DLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF--PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE----LEKET 500 (615)
T ss_pred HcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHHHh----cCCcc
Confidence 8777788999999999999999999999999998863 55688999999999999999999999999886 33321
Q ss_pred HHHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhhhhccchhhcceeEE--EEEccCCcccHHHHHHHHHHchhhc
Q 003913 545 MEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWL 622 (787)
Q Consensus 545 ~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--~~~~p~~~~~~~~l~~~y~~~g~~~ 622 (787)
... ... ....++..+..+...|++++|...++ +.++|++...+..++.+|...|+++
T Consensus 501 ~~~------------------~~~---~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~ 559 (615)
T TIGR00990 501 KPM------------------YMN---VLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVD 559 (615)
T ss_pred ccc------------------ccc---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHH
Confidence 000 000 01122222223344588888988887 7888999888999999999999999
Q ss_pred CCCccccCCCCC
Q 003913 623 HPSFKVSDGNDD 634 (787)
Q Consensus 623 ~A~~~~~~~~~~ 634 (787)
+|...++++...
T Consensus 560 eAi~~~e~A~~l 571 (615)
T TIGR00990 560 EALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHH
Confidence 998888665544
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.78 E-value=1.3e-14 Score=165.96 Aligned_cols=327 Identities=13% Similarity=0.034 Sum_probs=247.9
Q ss_pred HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCC
Q 003913 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQG 232 (787)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g 232 (787)
.+.+.|+++.|+.+++...... +-+......++......|++++|...|+++.+.... +...|..+...+. +.|
T Consensus 51 ~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~---~~g 124 (656)
T PRK15174 51 ACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLL---KSK 124 (656)
T ss_pred HHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHH---HcC
Confidence 5668899999999999998875 334444445555666799999999999999886422 4566777777777 789
Q ss_pred CHHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCC
Q 003913 233 CLDEACSIYNRMIQLGGYQPRP-SLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNI 311 (787)
Q Consensus 233 ~~~~A~~l~~~m~~~~g~~pd~-~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g 311 (787)
++++|+..|++..+ +.|+. ..+..+...+... |++++|...++.+......+. ..+..+ ..+...|
T Consensus 125 ~~~~Ai~~l~~Al~---l~P~~~~a~~~la~~l~~~------g~~~eA~~~~~~~~~~~P~~~-~a~~~~---~~l~~~g 191 (656)
T PRK15174 125 QYATVADLAEQAWL---AFSGNSQIFALHLRTLVLM------DKELQAISLARTQAQEVPPRG-DMIATC---LSFLNKS 191 (656)
T ss_pred CHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHC------CChHHHHHHHHHHHHhCCCCH-HHHHHH---HHHHHcC
Confidence 99999999999987 35654 4555566666554 689999999998877665432 233222 2356778
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHH----HH
Q 003913 312 DKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMK----SL 387 (787)
Q Consensus 312 ~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~----A~ 387 (787)
++++|...++.+.+..-.++...+..+..++.+.|++++|...++++.+..+. +...+..+...|...|++++ |.
T Consensus 192 ~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~ 270 (656)
T PRK15174 192 RLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAA 270 (656)
T ss_pred CHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHH
Confidence 99999999988877543344555566677888999999999999999887654 57778888999999999886 78
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 003913 388 EIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKC 467 (787)
Q Consensus 388 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~ 467 (787)
..|++..... +.+...+..+...+...|++++|...+++..+.. +.+..++..+..+|.+.|++++|...|+.+.+..
T Consensus 271 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~ 348 (656)
T PRK15174 271 EHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK 348 (656)
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 8999888753 2356788888999999999999999999988753 3346677788888999999999999998888643
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 003913 468 RPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ 501 (787)
Q Consensus 468 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 501 (787)
+.+...+..+..++...|+.++|.+.|++..+..
T Consensus 349 P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 349 GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 4344445556778888999999999999988763
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.77 E-value=6.5e-15 Score=168.54 Aligned_cols=329 Identities=8% Similarity=0.040 Sum_probs=259.6
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHH-HHHHHHH
Q 003913 185 KLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSL-HNSLFRA 263 (787)
Q Consensus 185 ~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t-~~~ll~~ 263 (787)
-++..+.+.|++++|+.+++........+. ..+..++.+.. ..|++++|+..|+++.+. .|+... +..+-..
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~-~~l~~l~~~~l---~~g~~~~A~~~l~~~l~~---~P~~~~a~~~la~~ 119 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKNGR-DLLRRWVISPL---ASSQPDAVLQVVNKLLAV---NVCQPEDVLLVASV 119 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCCch-hHHHHHhhhHh---hcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHH
Confidence 345566789999999999999988755433 34444445555 699999999999999974 566544 4444444
Q ss_pred HHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003913 264 LVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCA 343 (787)
Q Consensus 264 ~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~ 343 (787)
+... |++++|...+++++..... +...+..+. ..+...|+.++|...++.+....-. +...+..+ ..+.
T Consensus 120 l~~~------g~~~~Ai~~l~~Al~l~P~-~~~a~~~la--~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~ 188 (656)
T PRK15174 120 LLKS------KQYATVADLAEQAWLAFSG-NSQIFALHL--RTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFL 188 (656)
T ss_pred HHHc------CCHHHHHHHHHHHHHhCCC-cHHHHHHHH--HHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHH
Confidence 5554 6999999999999876432 234444444 7789999999999999988765322 22233333 4578
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH---
Q 003913 344 KEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETEL--- 420 (787)
Q Consensus 344 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~--- 420 (787)
..|++++|...++.+.+....++...+..+...+.+.|++++|...|++..... +.+...+..+...+...|++++
T Consensus 189 ~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~ 267 (656)
T PRK15174 189 NKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKL 267 (656)
T ss_pred HcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHH
Confidence 899999999999999887644455566667788999999999999999999764 3367788889999999999986
Q ss_pred -HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 003913 421 -TESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (787)
Q Consensus 421 -A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (787)
|...+++..+.. +.+..++..+...+.+.|++++|...++...+..+.+...+..+...|.+.|++++|+..|+++..
T Consensus 268 ~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~ 346 (656)
T PRK15174 268 QAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAR 346 (656)
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 899999998753 345789999999999999999999999999986677788899999999999999999999999998
Q ss_pred CCCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 003913 500 DQTIGVNT-RSCNIILSAYLSSGDFVKAEKIYDLMCLK 536 (787)
Q Consensus 500 ~~~~~p~~-~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (787)
.+ |+. ..+..+..++...|+.++|...|++..+.
T Consensus 347 ~~---P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 347 EK---GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred hC---ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 74 554 34445677899999999999999999873
No 19
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.75 E-value=3.7e-15 Score=174.20 Aligned_cols=478 Identities=9% Similarity=0.018 Sum_probs=279.2
Q ss_pred HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCH-hHHHHHHHHH-----h
Q 003913 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSE-MTFHILIVAY-----L 226 (787)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~-~ty~~li~~~-----~ 226 (787)
.+.+.|++++|+...+...+.. +.|...+..+ ..+ ++.++|..+++++.+.. |+. ..+..+.... .
T Consensus 87 ~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~L-a~i---~~~~kA~~~ye~l~~~~--P~n~~~~~~la~~~~~~~~l 158 (987)
T PRK09782 87 AYRHFGHDDRARLLLEDQLKRH--PGDARLERSL-AAI---PVEVKSVTTVEELLAQQ--KACDAVPTLRCRSEVGQNAL 158 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHH-HHh---ccChhHHHHHHHHHHhC--CCChhHHHHHHHHhhccchh
Confidence 5556677777777777776654 3344444443 222 66667777777776653 332 2222222220 1
Q ss_pred cCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhh
Q 003913 227 SAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHS 306 (787)
Q Consensus 227 ~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 306 (787)
.-.+.++|.+.++ .... ...|+..+....+.-+.... |++++|+.++.++.+.+... ..-...+- ..
T Consensus 159 ---~y~q~eqAl~AL~-lr~~-~~~~~~~vL~L~~~rlY~~l-----~dw~~Ai~lL~~L~k~~pl~-~~~~~~L~--~a 225 (987)
T PRK09782 159 ---RLAQLPVARAQLN-DATF-AASPEGKTLRTDLLQRAIYL-----KQWSQADTLYNEARQQNTLS-AAERRQWF--DV 225 (987)
T ss_pred ---hhhhHHHHHHHHH-Hhhh-CCCCCcHHHHHHHHHHHHHH-----hCHHHHHHHHHHHHhcCCCC-HHHHHHHH--HH
Confidence 1346666777666 3321 23333555555555555443 46777777777777776442 22222232 24
Q ss_pred hcc-CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHHHHH-------------
Q 003913 307 YQD-NIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNG-IPTPAFV------------- 371 (787)
Q Consensus 307 ~~~-~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~------------- 371 (787)
|.. .++ +++..+++. .++-+...+..+...|.+.|+.++|.++++++...... |...+|-
T Consensus 226 y~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~ 300 (987)
T PRK09782 226 LLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQA 300 (987)
T ss_pred HHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhh
Confidence 444 233 556555442 23356777778888888888888888888776654211 1111110
Q ss_pred -----------------HHHHHHHHc------------------------------------------------------
Q 003913 372 -----------------YKMEAYAKI------------------------------------------------------ 380 (787)
Q Consensus 372 -----------------~li~~~~~~------------------------------------------------------ 380 (787)
.++..+.+.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~ 380 (987)
T PRK09782 301 LANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLD 380 (987)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHH
Confidence 012222222
Q ss_pred ---------CChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCC---hHHHHHH----------------------
Q 003913 381 ---------GEFMKSLEIFREMQER--LGSASVPAYHKIIELLCKAEE---TELTESL---------------------- 424 (787)
Q Consensus 381 ---------g~~~~A~~~~~~m~~~--g~~p~~~t~~~li~~~~~~g~---~~~A~~l---------------------- 424 (787)
|+.++|..+|+..... ...++...-+-++..|.+.+. ..+|..+
T Consensus 381 q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (987)
T PRK09782 381 QLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADN 460 (987)
T ss_pred HHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhh
Confidence 3333333333333221 011222233345555555544 2222222
Q ss_pred HHHHHH-cCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 003913 425 MKEFVE-TGM-KP--LMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 425 ~~~m~~-~g~-~p--~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (787)
...... .+. ++ +...|..+..++.. ++.++|...+....... |+......+...+...|++++|...|+++...
T Consensus 461 ~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~-Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~ 538 (987)
T PRK09782 461 CPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ-PDAWQHRAVAYQAYQVEDYATALAAWQKISLH 538 (987)
T ss_pred HHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 111111 111 23 56778888877776 78888988887776533 45443334455556889999999999987664
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHH-HHhh---cc--cccc-cccccCCchHHHH
Q 003913 501 QTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDY-VLSL---NR--KEVK-KPVSLNLSSEQRE 573 (787)
Q Consensus 501 ~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~-~~~l---~~--~~~~-~~~~~~l~~~~~~ 573 (787)
+|+...+..+..++.+.|+.++|..+++..++.. |+....+.. +..+ ++ +.+. ........| +.
T Consensus 539 ---~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~----P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P--~~ 609 (987)
T PRK09782 539 ---DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG----LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAP--SA 609 (987)
T ss_pred ---CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC--CH
Confidence 4566667777888888999999999999888643 332222111 1111 11 0000 000111222 25
Q ss_pred HHHHHHhhhhhhccchhhcceeEE--EEEccCCcccHHHHHHHHHHchhhcCCCccccCCCCCcceEEeeeccchHHHHH
Q 003913 574 NLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSFKVSDGNDDIPYKYSTISHPYFCFYA 651 (787)
Q Consensus 574 ~~~~~ll~~~~~~~~~~~a~~~~~--~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~p~~~~t~~~~~~~~~~ 651 (787)
..|..+...+...|+.++|...++ +.++|+++..+..++.++...|++++|...+.++....|.....+......+..
T Consensus 610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~ 689 (987)
T PRK09782 610 NAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQR 689 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 677888888888899998888887 888899888888899889999999998888888888888877777788888888
Q ss_pred HhhccCcccccccchh
Q 003913 652 DKFWPKGRLVIPKLIH 667 (787)
Q Consensus 652 ~g~~~~a~~~~~~mi~ 667 (787)
.|.+++|+..+.+.++
T Consensus 690 lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 690 LDDMAATQHYARLVID 705 (987)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 8888888877777665
No 20
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.74 E-value=1.5e-14 Score=169.03 Aligned_cols=470 Identities=9% Similarity=-0.044 Sum_probs=309.1
Q ss_pred HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHc-cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcC
Q 003913 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGK-ERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQ 231 (787)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~ 231 (787)
.+.+.+++++|..++..+.+.+ +.+......|-.+|.. .++ ++|..++.... .-|...+..+...|. +.
T Consensus 191 lY~~l~dw~~Ai~lL~~L~k~~--pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~l----k~d~~l~~ala~~yi---~~ 260 (987)
T PRK09782 191 RAIYLKQWSQADTLYNEARQQN--TLSAAERRQWFDVLLAGQLD-DRLLALQSQGI----FTDPQSRITYATALA---YR 260 (987)
T ss_pred HHHHHhCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhc----ccCHHHHHHHHHHHH---HC
Confidence 7778999999999999999987 4455656677777777 366 88888866422 248889999999999 89
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC----CC--------------------CChhhHHHHHHHHHHHH
Q 003913 232 GCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKP----GG--------------------LSKYYLQQAEFIFHNLL 287 (787)
Q Consensus 232 g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~----~~--------------------~~~g~~~~A~~~~~~m~ 287 (787)
|+.++|.++++++....--.|+..++--++.-..... .. ..++.++-|+++.
T Consensus 261 G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 336 (987)
T PRK09782 261 GEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL---- 336 (987)
T ss_pred CCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh----
Confidence 9999999999998754222344444333322211110 00 0012333333221
Q ss_pred HcCCccCHHHHHHHHH----------------------------------HhhhccCCCHHHHHHHHHHHHHc-C-CCCC
Q 003913 288 TSGLEIQKDIYSGLIW----------------------------------LHSYQDNIDKERISLLKKEMQQA-G-FEEG 331 (787)
Q Consensus 288 ~~~~~p~~~~~~~li~----------------------------------~~~~~~~g~~~~a~~l~~~m~~~-g-~~p~ 331 (787)
++.|.... .... .....+.|+.++|.++|+..... + -.++
T Consensus 337 --~~~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 412 (987)
T PRK09782 337 --ATLPANEM--LEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLS 412 (987)
T ss_pred --cCCCcchH--HHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccC
Confidence 12222221 1111 12234556667777777766541 1 2233
Q ss_pred HHHHHHHHHHHHhcCChHHHHHH-------------------------HHHHHhC-CC-CC--CHHHHHHHHHHHHHcCC
Q 003913 332 KEVLLSVLRVCAKEGDVEDAEKT-------------------------WLRLLES-DN-GI--PTPAFVYKMEAYAKIGE 382 (787)
Q Consensus 332 ~~t~~~li~~~~~~g~~~~A~~~-------------------------~~~m~~~-~~-~~--~~~~~~~li~~~~~~g~ 382 (787)
.....-++..|.+.+.+....++ .+..... +. .+ +...|..+..++.. |+
T Consensus 413 ~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~ 491 (987)
T PRK09782 413 QTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TL 491 (987)
T ss_pred HHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CC
Confidence 44445666666665552222111 1111111 11 12 45667777777766 78
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003913 383 FMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSE 462 (787)
Q Consensus 383 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~ 462 (787)
.++|...|.+.... .|+......+...+...|++++|...|+++... .|+...+..+..++.+.|+.++|...++.
T Consensus 492 ~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~q 567 (987)
T PRK09782 492 PGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQ 567 (987)
T ss_pred cHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888877777655 355444434445556788888888888887553 45555566777788888888888888888
Q ss_pred HHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCH
Q 003913 463 CLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIES 542 (787)
Q Consensus 463 m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p 542 (787)
.++..+.+...+..+...+.+.|++++|...|++..+.. |+...|..+...+.+.|++++|+..|++.++ .+|
T Consensus 568 AL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~---P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~----l~P 640 (987)
T PRK09782 568 AEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA---PSANAYVARATIYRQRHNVPAAVSDLRAALE----LEP 640 (987)
T ss_pred HHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCC
Confidence 877444454455554455556688888888888888753 6788888888888888888888888888886 556
Q ss_pred HHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhhhhccchhhcceeEE--EEEccCCcccHHHHHHHHHHchh
Q 003913 543 AWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHE 620 (787)
Q Consensus 543 ~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--~~~~p~~~~~~~~l~~~y~~~g~ 620 (787)
+. ...+..+...+...|+.++|+..++ +.+.|+++..+..++.+|...|+
T Consensus 641 d~----------------------------~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd 692 (987)
T PRK09782 641 NN----------------------------SNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDD 692 (987)
T ss_pred CC----------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 52 5678888889999999999999888 88899999999999999999999
Q ss_pred hcCCCccccCCCCCcceEEeeeccchHHHHHHhhccCcccccccchhhcCChhHHHHHhhcC
Q 003913 621 WLHPSFKVSDGNDDIPYKYSTISHPYFCFYADKFWPKGRLVIPKLIHRWLTPRALAYWFMYG 682 (787)
Q Consensus 621 ~~~A~~~~~~~~~~~p~~~~t~~~~~~~~~~~g~~~~a~~~~~~mi~~gl~P~~lay~~m~~ 682 (787)
+++|...+++.....|.................++..+.+.+.+-.. ++|+.++.....+
T Consensus 693 ~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~--~~~~~~a~~~~g~ 752 (987)
T PRK09782 693 MAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWT--FSFDSSIGLRSGA 752 (987)
T ss_pred HHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh--cCccchhccccch
Confidence 99999999988888887544333333344455555556555554443 6787775444443
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.73 E-value=1.7e-14 Score=168.62 Aligned_cols=361 Identities=11% Similarity=0.031 Sum_probs=247.7
Q ss_pred HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCC
Q 003913 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQG 232 (787)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g 232 (787)
.+...|++++|..+++...+.. +.+...+..+...+.+.|++++|+..+++..+... .+.. |..+...+. +.|
T Consensus 58 ~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~---~~g 130 (765)
T PRK10049 58 AYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYK---RAG 130 (765)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHH---HCC
Confidence 6778888888988888888764 55666677888888888899999988888887632 2344 777766777 788
Q ss_pred CHHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCH------HHHHHHHHHh
Q 003913 233 CLDEACSIYNRMIQLGGYQPRPSLH-NSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQK------DIYSGLIWLH 305 (787)
Q Consensus 233 ~~~~A~~l~~~m~~~~g~~pd~~t~-~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~li~~~ 305 (787)
+.++|+..++++.+. .|+.... ..+..++... |..++|...++.+.. .|+. ......+.+.
T Consensus 131 ~~~~Al~~l~~al~~---~P~~~~~~~~la~~l~~~------~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~ 198 (765)
T PRK10049 131 RHWDELRAMTQALPR---APQTQQYPTEYVQALRNN------RLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLS 198 (765)
T ss_pred CHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHC------CChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhh
Confidence 889999998888873 4655433 3333333332 477788888776553 2211 1112222111
Q ss_pred h---hccCCCH---HHHHHHHHHHHHc-CCCCCHH-HH----HHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHHHHHH
Q 003913 306 S---YQDNIDK---ERISLLKKEMQQA-GFEEGKE-VL----LSVLRVCAKEGDVEDAEKTWLRLLESDNG-IPTPAFVY 372 (787)
Q Consensus 306 ~---~~~~g~~---~~a~~l~~~m~~~-g~~p~~~-t~----~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~ 372 (787)
. ....+++ ++|++.++.+.+. .-.|+.. .+ ...+.++...|++++|...|+.+.+.+.. |+ ..-..
T Consensus 199 ~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~ 277 (765)
T PRK10049 199 FMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRW 277 (765)
T ss_pred cccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHH
Confidence 1 1122233 6677788887754 2233321 11 11134456778889999999888887632 32 22223
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-----------CCCC--
Q 003913 373 KMEAYAKIGEFMKSLEIFREMQERLGSA---SVPAYHKIIELLCKAEETELTESLMKEFVETG-----------MKPL-- 436 (787)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g-----------~~p~-- 436 (787)
+...|...|++++|+..|+++....... ....+..+..++...|++++|..+++.+.... -.|+
T Consensus 278 la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~ 357 (765)
T PRK10049 278 VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDD 357 (765)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCch
Confidence 5778888899999999988877542111 13445666777888899999999888888642 1123
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHH
Q 003913 437 -MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILS 515 (787)
Q Consensus 437 -~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~ 515 (787)
...+..+...+...|++++|+.+++++....+.+...+..+...+...|++++|++.+++..... |.+...+..+..
T Consensus 358 ~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~ 435 (765)
T PRK10049 358 WLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLE--PRNINLEVEQAW 435 (765)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCChHHHHHHHH
Confidence 23456677788888999999999988888777788888888888888999999999999888864 445677777777
Q ss_pred HHHcCCCHHHHHHHHHHHHH
Q 003913 516 AYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~~ 535 (787)
.+...|++++|+.+++++++
T Consensus 436 ~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 436 TALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHhCCHHHHHHHHHHHHH
Confidence 88888899999999998886
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.72 E-value=2.7e-13 Score=158.63 Aligned_cols=370 Identities=9% Similarity=0.007 Sum_probs=205.4
Q ss_pred cCCcchHHHHHHHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHH
Q 003913 142 LRQEDGTYLAVHCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHIL 221 (787)
Q Consensus 142 ~~p~~~t~~~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~l 221 (787)
..|..++=.+......|+.++|.+++....... +.+...+..+...+.+.|++++|..+|++..+... .+...+..+
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~l 89 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP-QNDDYQRGL 89 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 334443333334456677777777777776532 34555566777777777777777777777665421 134445555
Q ss_pred HHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHH
Q 003913 222 IVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGL 301 (787)
Q Consensus 222 i~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 301 (787)
...+. +.|++++|+..+++..+. .|+...+..+-.++... |+.++|...++++.+..+. +...+..+
T Consensus 90 a~~l~---~~g~~~eA~~~l~~~l~~---~P~~~~~~~la~~l~~~------g~~~~Al~~l~~al~~~P~-~~~~~~~l 156 (765)
T PRK10049 90 ILTLA---DAGQYDEALVKAKQLVSG---APDKANLLALAYVYKRA------GRHWDELRAMTQALPRAPQ-TQQYPTEY 156 (765)
T ss_pred HHHHH---HCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHC------CCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 56666 677777777777777663 34333343333334333 4677777777777766654 33333333
Q ss_pred HHHhhhccCCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHH-----hcCCh---HHHHHHHHHHHhC-CCCCC
Q 003913 302 IWLHSYQDNIDKERISLLKKEMQQAGFEEGK------EVLLSVLRVCA-----KEGDV---EDAEKTWLRLLES-DNGIP 366 (787)
Q Consensus 302 i~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~------~t~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-~~~~~ 366 (787)
..+...... .+.|+..++.... .|+. .....++.... ..+++ ++|.+.++.+.+. ...|+
T Consensus 157 a~~l~~~~~--~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~ 231 (765)
T PRK10049 157 VQALRNNRL--SAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPD 231 (765)
T ss_pred HHHHHHCCC--hHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCc
Confidence 333444444 3455555554332 1111 11122222222 22333 5666666666643 11121
Q ss_pred HH-HH----HHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CH
Q 003913 367 TP-AF----VYKMEAYAKIGEFMKSLEIFREMQERLGS-ASVPAYHKIIELLCKAEETELTESLMKEFVETGMKP---LM 437 (787)
Q Consensus 367 ~~-~~----~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~ 437 (787)
.. .+ ...+.++...|++++|+..|+++.+.+.. |+.. -..+..+|...|++++|..+|+++.+..-.. ..
T Consensus 232 ~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~ 310 (765)
T PRK10049 232 ATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYHPETIADLSD 310 (765)
T ss_pred cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCCh
Confidence 11 11 11123344557777777777777665422 2221 1124556777777777777777766532110 12
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------------CC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 003913 438 PSYINLTNMYLNLGMHDRLHLAFSECLEKCR------------PN---RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQT 502 (787)
Q Consensus 438 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~------------p~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~ 502 (787)
.....|..++...|++++|..+++.+.+..+ |+ ...+..+...+...|++++|+++++++....
T Consensus 311 ~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~- 389 (765)
T PRK10049 311 EELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA- 389 (765)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 3455566666777777777777777665322 22 2345566667777777777777777776663
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 503 IGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 503 ~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
|-+...+..+...+...|++++|++.+++.++
T Consensus 390 -P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~ 421 (765)
T PRK10049 390 -PGNQGLRIDYASVLQARGWPRAAENELKKAEV 421 (765)
T ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 55666777777777777777777777777765
No 23
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=2.9e-13 Score=134.69 Aligned_cols=348 Identities=13% Similarity=0.064 Sum_probs=261.8
Q ss_pred ccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHH
Q 003913 177 RFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSL 256 (787)
Q Consensus 177 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t 256 (787)
+.+..+|..+|.++||--..+.|.+++++-.+...+.+..+||.+|.+-. +-...++..+|.+. .+.||..|
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S-------~~~~K~Lv~EMisq-km~Pnl~T 275 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS-------YSVGKKLVAEMISQ-KMTPNLFT 275 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH-------hhccHHHHHHHHHh-hcCCchHh
Confidence 44567899999999999999999999999998877889999999998866 22337899999987 79999999
Q ss_pred HHHHHHHHHcCCCCCChhhHH----HHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHH-HHHHH----HHHHHcC
Q 003913 257 HNSLFRALVSKPGGLSKYYLQ----QAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKER-ISLLK----KEMQQAG 327 (787)
Q Consensus 257 ~~~ll~~~~~~~~~~~~g~~~----~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~-a~~l~----~~m~~~g 327 (787)
||+++.+.++. |+++ .|.+++.+|.+.|+.|.-.+|..+| ...++.++..+ |..++ +.+....
T Consensus 276 fNalL~c~akf------g~F~~ar~aalqil~EmKeiGVePsLsSyh~ii--k~f~re~dp~k~as~~i~dI~N~ltGK~ 347 (625)
T KOG4422|consen 276 FNALLSCAAKF------GKFEDARKAALQILGEMKEIGVEPSLSSYHLII--KNFKRESDPQKVASSWINDIQNSLTGKT 347 (625)
T ss_pred HHHHHHHHHHh------cchHHHHHHHHHHHHHHHHhCCCcchhhHHHHH--HHhcccCCchhhhHHHHHHHHHhhccCc
Confidence 99999988876 4444 5678889999999999999999999 67788777754 33333 3333344
Q ss_pred CCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC----CCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 003913 328 FEE----GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESD----NGIP---TPAFVYKMEAYAKIGEFMKSLEIFREMQER 396 (787)
Q Consensus 328 ~~p----~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 396 (787)
++| |..-|.+.++.|.+..+.+.|.++..-+.... +.|+ ..-|..+....|+...++.-...|+.|.-.
T Consensus 348 fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~ 427 (625)
T KOG4422|consen 348 FKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPS 427 (625)
T ss_pred ccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 554 45667889999999999999999987665432 1222 223556788899999999999999999988
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CH--------H-----HHHHHHHH
Q 003913 397 LGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLG-MH--------D-----RLHLAFSE 462 (787)
Q Consensus 397 g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g-~~--------~-----~a~~~~~~ 462 (787)
-+-|+..+...++++....|.++-.-+++..++..|...+....--++..+++.. .. . -|..+++.
T Consensus 428 ~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~ 507 (625)
T KOG4422|consen 428 AYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEA 507 (625)
T ss_pred eecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999998886655555555555555544 11 0 01111111
Q ss_pred HH------hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC---CHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 003913 463 CL------EKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGV---NTRSCNIILSAYLSSGDFVKAEKIYDLM 533 (787)
Q Consensus 463 m~------~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p---~~~t~~~li~~~~~~g~~~~A~~~~~~m 533 (787)
.. +...-.....+...-.+.+.|+.++|.++|....+++.--| ......-+++.-.+..+...|..+++-|
T Consensus 508 ~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 508 YESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 11 02234456677888889999999999999999866553223 3333445666777888999999999999
Q ss_pred HHcCCcc
Q 003913 534 CLKKYEI 540 (787)
Q Consensus 534 ~~~g~~~ 540 (787)
...++..
T Consensus 588 ~~~n~~~ 594 (625)
T KOG4422|consen 588 SAFNLPI 594 (625)
T ss_pred HHcCchh
Confidence 8755433
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.66 E-value=1.5e-12 Score=149.53 Aligned_cols=428 Identities=11% Similarity=0.022 Sum_probs=301.0
Q ss_pred HHhhcCChhHHHHHHHHHHhcCCCccCH-HHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHH---HHHhcC
Q 003913 153 HCMRIRENETGFRVYEWMMQQHWYRFDF-ALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILI---VAYLSA 228 (787)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li---~~~~~~ 228 (787)
...+.|+++.|+..|..+.+.. +.+. .++ .++..+...|+.++|+.++++... |+...+..++ ..+.
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~----p~n~~~~~llalA~ly~-- 113 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS----SMNISSRGLASAARAYR-- 113 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc----CCCCCHHHHHHHHHHHH--
Confidence 6679999999999999999875 3232 334 888888999999999999999883 4444444443 3455
Q ss_pred CcCCCHHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhh
Q 003913 229 PVQGCLDEACSIYNRMIQLGGYQPRP-SLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSY 307 (787)
Q Consensus 229 ~~~g~~~~A~~l~~~m~~~~g~~pd~-~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 307 (787)
..|++++|+++|+++.+. .|+. ..+..+...+... ++.++|.+.++.+..... +...+ +..++.+
T Consensus 114 -~~gdyd~Aiely~kaL~~---dP~n~~~l~gLa~~y~~~------~q~~eAl~~l~~l~~~dp--~~~~~--l~layL~ 179 (822)
T PRK14574 114 -NEKRWDQALALWQSSLKK---DPTNPDLISGMIMTQADA------GRGGVVLKQATELAERDP--TVQNY--MTLSYLN 179 (822)
T ss_pred -HcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHhhc------CCHHHHHHHHHHhcccCc--chHHH--HHHHHHH
Confidence 679999999999999985 4543 3444444445554 589999999999987654 44444 4444666
Q ss_pred ccCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHH-----
Q 003913 308 QDNIDKERISLLKKEMQQAGFEE-GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAF--VYKMEAYAK----- 379 (787)
Q Consensus 308 ~~~g~~~~a~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~--~~li~~~~~----- 379 (787)
...++..+|++.++++.+. .| +...+..++.++.+.|-...|.++..+-... +.+....+ ...+.-..+
T Consensus 180 ~~~~~~~~AL~~~ekll~~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~ 256 (822)
T PRK14574 180 RATDRNYDALQASSEAVRL--APTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLP 256 (822)
T ss_pred HhcchHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccc
Confidence 6677777799999999986 45 5667788889999999999988776543321 11111111 000111111
Q ss_pred ----cCC---hHHHHHHHHHHHHc-CCCCCH-H----HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003913 380 ----IGE---FMKSLEIFREMQER-LGSASV-P----AYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNM 446 (787)
Q Consensus 380 ----~g~---~~~A~~~~~~m~~~-g~~p~~-~----t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~ 446 (787)
..+ .+.|+.-++.+... +-.|.. . ..--.+-++...|+..++.+.++.|...|.+.-..+-..+.++
T Consensus 257 ~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ada 336 (822)
T PRK14574 257 TRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASA 336 (822)
T ss_pred cccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHH
Confidence 112 34455556665542 112321 1 2223456778889999999999999988866556788889999
Q ss_pred HHhcCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC------------CCCCH-
Q 003913 447 YLNLGMHDRLHLAFSECLEK------CRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQT------------IGVNT- 507 (787)
Q Consensus 447 ~~~~g~~~~a~~~~~~m~~~------~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~------------~~p~~- 507 (787)
|...+++++|..+|..+... ..++......|.-+|...+++++|..+++++.+.-. -.||-
T Consensus 337 yl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~ 416 (822)
T PRK14574 337 YIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWI 416 (822)
T ss_pred HHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHH
Confidence 99999999999999998752 233455567888999999999999999999987421 01122
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhhhhcc
Q 003913 508 RSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIES 587 (787)
Q Consensus 508 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~ 587 (787)
..+..++..+...|++.+|++.++++.. ..|. +.-++..+.......|
T Consensus 417 ~~~~l~a~~~~~~gdl~~Ae~~le~l~~----~aP~----------------------------n~~l~~~~A~v~~~Rg 464 (822)
T PRK14574 417 EGQTLLVQSLVALNDLPTAQKKLEDLSS----TAPA----------------------------NQNLRIALASIYLARD 464 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCC----------------------------CHHHHHHHHHHHHhcC
Confidence 2334456678889999999999999986 4444 2566777888888888
Q ss_pred chhhcceeEE--EEEccCCcccHHHHHHHHHHchhhcCCCccccCCCCCcceE
Q 003913 588 DEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSFKVSDGNDDIPYK 638 (787)
Q Consensus 588 ~~~~a~~~~~--~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~p~~ 638 (787)
....|+..++ ..++|++......++..+...|+|.+|.....+.....|..
T Consensus 465 ~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~ 517 (822)
T PRK14574 465 LPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPED 517 (822)
T ss_pred CHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCc
Confidence 8888888887 66788888888888888888899988877766666666653
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.65 E-value=6.8e-13 Score=145.21 Aligned_cols=510 Identities=11% Similarity=0.062 Sum_probs=296.4
Q ss_pred CcchHHHHH-HHh--hcCChhHHHHHHHHHHhcC-CCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHH
Q 003913 144 QEDGTYLAV-HCM--RIRENETGFRVYEWMMQQH-WYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFH 219 (787)
Q Consensus 144 p~~~t~~~~-~~~--~~~~~~~A~~~~~~m~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~ 219 (787)
|+.+-+.+- +|. ..+++..|+.+|....... ...+|+.+. +-.++.+.|+.+.|+..|.+..+.+ | ..-+
T Consensus 161 p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIg--ig~Cf~kl~~~~~a~~a~~ralqLd--p--~~v~ 234 (1018)
T KOG2002|consen 161 PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIG--IGHCFWKLGMSEKALLAFERALQLD--P--TCVS 234 (1018)
T ss_pred CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccch--hhhHHHhccchhhHHHHHHHHHhcC--h--hhHH
Confidence 444444433 333 4677888888888755432 245565442 2355678888888888888877752 3 2222
Q ss_pred HHHHH--Hh-cCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHH
Q 003913 220 ILIVA--YL-SAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKD 296 (787)
Q Consensus 220 ~li~~--~~-~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 296 (787)
+++.- +. .......+..++.++...-...+-.| +..+.|-+-+... |++..+..+.+.+......-..-
T Consensus 235 alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP--~~l~~LAn~fyfK------~dy~~v~~la~~ai~~t~~~~~~ 306 (1018)
T KOG2002|consen 235 ALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENP--VALNHLANHFYFK------KDYERVWHLAEHAIKNTENKSIK 306 (1018)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCc--HHHHHHHHHHhhc------ccHHHHHHHHHHHHHhhhhhHHH
Confidence 22221 11 00123446667777766655433333 3444555555554 57888888777776655322222
Q ss_pred HHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003913 297 IYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEV--LLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKM 374 (787)
Q Consensus 297 ~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 374 (787)
.-+..-++.++-..|++++|...|.+..+ ..||.++ +.-|...|.+.|+++.+...|+.+.+..+. +..+...|.
T Consensus 307 aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k--~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~-~~etm~iLG 383 (1018)
T KOG2002|consen 307 AESFYQLGRSYHAQGDFEKAFKYYMESLK--ADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN-NYETMKILG 383 (1018)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHc--cCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 22334444777788888888888765554 3455444 345677778888888888888887776532 455666666
Q ss_pred HHHHHcC----ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH----HcCCCCCHHHHHHHHHH
Q 003913 375 EAYAKIG----EFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFV----ETGMKPLMPSYINLTNM 446 (787)
Q Consensus 375 ~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~----~~g~~p~~~t~~~li~~ 446 (787)
..|+..+ ..+.|..++.+..+.- +-|...|-.+...+-. +++..++.+|.... ..+-.+-....|.+...
T Consensus 384 ~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvasl 461 (1018)
T KOG2002|consen 384 CLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASL 461 (1018)
T ss_pred hHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHH
Confidence 6666664 4566666666665542 3356666655555544 34444466555443 34445667777888888
Q ss_pred HHhcCCHHHHHHHHHHHHhc----CCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCH-HHHHHHHH
Q 003913 447 YLNLGMHDRLHLAFSECLEK----CRPN------RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNT-RSCNIILS 515 (787)
Q Consensus 447 ~~~~g~~~~a~~~~~~m~~~----~~p~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~-~t~~~li~ 515 (787)
+...|++++|...|...... ..++ +.+--.+...+-..++++.|.+.|..+.+.. |.- ..|.-++.
T Consensus 462 hf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh---p~YId~ylRl~~ 538 (1018)
T KOG2002|consen 462 HFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH---PGYIDAYLRLGC 538 (1018)
T ss_pred HHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC---chhHHHHHHhhH
Confidence 88888888888877776643 1222 2233334555566677788888888877764 443 34444443
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcc------cccccccccCCchHHHHHHHHHHhhhhhhc---
Q 003913 516 AYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNR------KEVKKPVSLNLSSEQRENLIGLLLGGLCIE--- 586 (787)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~------~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~--- 586 (787)
.....+...+|...+..... .-.-+|+....++....... +-.......+.. .+|+.+..+|.+.|...
T Consensus 539 ma~~k~~~~ea~~~lk~~l~-~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~-~~D~YsliaLGN~~~~~l~~ 616 (1018)
T KOG2002|consen 539 MARDKNNLYEASLLLKDALN-IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTST-KTDAYSLIALGNVYIQALHN 616 (1018)
T ss_pred HHHhccCcHHHHHHHHHHHh-cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhcc-CCchhHHHHhhHHHHHHhcc
Confidence 33445667777777777774 44456665444442221111 100000000111 12345555555543322
Q ss_pred ---------cchhhcceeEE--EEEccCCcccHHHHHHHHHHchhhcCCCccccCCCCCcceEEeeeccchHHHHHHhhc
Q 003913 587 ---------SDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSFKVSDGNDDIPYKYSTISHPYFCFYADKFW 655 (787)
Q Consensus 587 ---------~~~~~a~~~~~--~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~p~~~~t~~~~~~~~~~~g~~ 655 (787)
+..++|.+++. +..+|.|..+-+-++-+++.+|+|.+|..+|....+-......+|...+..+...|.|
T Consensus 617 ~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy 696 (1018)
T KOG2002|consen 617 PSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQY 696 (1018)
T ss_pred cccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHH
Confidence 23456666666 7778888888888888888888888888877322222222233555556688888888
Q ss_pred cCcccccccchhhcC---ChhHHHH
Q 003913 656 PKGRLVIPKLIHRWL---TPRALAY 677 (787)
Q Consensus 656 ~~a~~~~~~mi~~gl---~P~~lay 677 (787)
..|+++|+.-+.... .+..+.|
T Consensus 697 ~~AIqmYe~~lkkf~~~~~~~vl~~ 721 (1018)
T KOG2002|consen 697 RLAIQMYENCLKKFYKKNRSEVLHY 721 (1018)
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHH
Confidence 888888877665555 4555544
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.62 E-value=3.4e-11 Score=138.37 Aligned_cols=365 Identities=9% Similarity=0.041 Sum_probs=247.0
Q ss_pred HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCC
Q 003913 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQG 232 (787)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g 232 (787)
.+...|++++|.++++.+.+.. +.+...+..++..+...++.++|++.++++... .|+...+ +..++... ..+
T Consensus 111 ly~~~gdyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~--l~layL~~-~~~ 183 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNY--MTLSYLNR-ATD 183 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHH--HHHHHHHH-hcc
Confidence 4445677777777777777765 445566666777777777777777777777665 3454444 22333311 245
Q ss_pred CHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCcc-----CHHHHHHHHHHhh
Q 003913 233 CLDEACSIYNRMIQLGGYQPR-PSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEI-----QKDIYSGLIWLHS 306 (787)
Q Consensus 233 ~~~~A~~l~~~m~~~~g~~pd-~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p-----~~~~~~~li~~~~ 306 (787)
+..+|++.++++.+. .|+ ...+..++.++.+. |-...|.++..+-...=-.. ..+.....+....
T Consensus 184 ~~~~AL~~~ekll~~---~P~n~e~~~~~~~~l~~~------~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~ 254 (822)
T PRK14574 184 RNYDALQASSEAVRL---APTSEEVLKNHLEILQRN------RIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAV 254 (822)
T ss_pred hHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHc------CCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcc
Confidence 555577777777764 354 33344445555543 34445554443321000000 0011111111100
Q ss_pred -hc--cCCC---HHHHHHHHHHHHH-cCCCCCH-H----HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003913 307 -YQ--DNID---KERISLLKKEMQQ-AGFEEGK-E----VLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKM 374 (787)
Q Consensus 307 -~~--~~g~---~~~a~~l~~~m~~-~g~~p~~-~----t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 374 (787)
.. ...+ .+.|+.-++.+.. .+-.|.. . ...-.+-++...|++.++.+.++.+...+......+-..+.
T Consensus 255 ~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~a 334 (822)
T PRK14574 255 LPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAA 334 (822)
T ss_pred cccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHH
Confidence 00 1111 2445555555544 2222432 1 22355667889999999999999999988665567778899
Q ss_pred HHHHHcCChHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-----------CC--C
Q 003913 375 EAYAKIGEFMKSLEIFREMQERL-----GSASVPAYHKIIELLCKAEETELTESLMKEFVETGM-----------KP--L 436 (787)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~-----------~p--~ 436 (787)
++|...+++++|..+|+++.... ..++......|.-+|...+++++|..+++.+.+.-- .| |
T Consensus 335 dayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d 414 (822)
T PRK14574 335 SAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDD 414 (822)
T ss_pred HHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCcc
Confidence 99999999999999999986542 233444467899999999999999999999987311 12 2
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHH
Q 003913 437 -MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILS 515 (787)
Q Consensus 437 -~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~ 515 (787)
...+..++..+.-.|++.+|++.++++...-|-|......+.+.+...|+..+|++.++...... +-+..+......
T Consensus 415 ~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~--P~~~~~~~~~~~ 492 (822)
T PRK14574 415 WIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLA--PRSLILERAQAE 492 (822)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC--CccHHHHHHHHH
Confidence 23455667778899999999999999988888899999999999999999999999998877764 456778888889
Q ss_pred HHHcCCCHHHHHHHHHHHHH
Q 003913 516 AYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~~ 535 (787)
++...|++++|..+.+...+
T Consensus 493 ~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 493 TAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHhhhhHHHHHHHHHHHHh
Confidence 99999999999999999886
No 27
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=1.8e-11 Score=122.24 Aligned_cols=367 Identities=15% Similarity=0.136 Sum_probs=220.7
Q ss_pred HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHH--ccCChh-HHHHHHHHHHHCCC------------------
Q 003913 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMG--KERKFA-KCRDIFDDIINQGR------------------ 211 (787)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~--~~g~~~-~A~~~f~~m~~~g~------------------ 211 (787)
-....|.++.+.-+++.|...| .+.+..+--.|...-+ ...++. .-++.|-.|...|-
T Consensus 124 kmIS~~EvKDs~ilY~~m~~e~-~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~ 202 (625)
T KOG4422|consen 124 KMISSREVKDSCILYERMRSEN-VDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFET 202 (625)
T ss_pred HHHhhcccchhHHHHHHHHhcC-CCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhh
Confidence 4456788888888888888887 5656555544444322 222222 22333444443321
Q ss_pred -CCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcC
Q 003913 212 -VPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSG 290 (787)
Q Consensus 212 -~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~ 290 (787)
.....||.+||.|+| +--..+.|.++|++-... ..+.+..+||.+|.+-. +....+++.+|....
T Consensus 203 ~PKT~et~s~mI~Gl~---K~~~~ERA~~L~kE~~~~-k~kv~~~aFN~lI~~~S----------~~~~K~Lv~EMisqk 268 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLC---KFSSLERARELYKEHRAA-KGKVYREAFNGLIGASS----------YSVGKKLVAEMISQK 268 (625)
T ss_pred cCCCchhHHHHHHHHH---HHHhHHHHHHHHHHHHHh-hheeeHHhhhhhhhHHH----------hhccHHHHHHHHHhh
Confidence 114467777777777 667777777777777665 45677777777776643 333466777777777
Q ss_pred CccCHHHHHHHHHHhhhccCCCHHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHH----hC
Q 003913 291 LEIQKDIYSGLIWLHSYQDNIDKER----ISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVED-AEKTWLRLL----ES 361 (787)
Q Consensus 291 ~~p~~~~~~~li~~~~~~~~g~~~~----a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~-A~~~~~~m~----~~ 361 (787)
+.||..|++.++ .+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ |..+..++. .+
T Consensus 269 m~Pnl~TfNalL--~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK 346 (625)
T KOG4422|consen 269 MTPNLFTFNALL--SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGK 346 (625)
T ss_pred cCCchHhHHHHH--HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccC
Confidence 777777777777 66666665543 45666777777777777777777777777766644 222222222 12
Q ss_pred CCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003913 362 DNGI----PTPAFVYKMEAYAKIGEFMKSLEIFREMQER----LGSASV---PAYHKIIELLCKAEETELTESLMKEFVE 430 (787)
Q Consensus 362 ~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~---~t~~~li~~~~~~g~~~~A~~l~~~m~~ 430 (787)
.++| |...|..-|..|....+.+-|.++-.-+... -+.|+. .-|..+....|+....+.-...|+.|+-
T Consensus 347 ~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP 426 (625)
T KOG4422|consen 347 TFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVP 426 (625)
T ss_pred cccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2222 3334455566666667777776665544321 122332 2255566667777777777777777777
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcC-C-------------------H-H
Q 003913 431 TGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE-KCRPNRTIYGIYLESLKNAG-N-------------------I-E 488 (787)
Q Consensus 431 ~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-~~~p~~~~~~~li~~~~~~g-~-------------------~-~ 488 (787)
+-+-|+..+...++++..-.|.++-.-++|..+.. |..-+...-.-++..+++.. + + +
T Consensus 427 ~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e 506 (625)
T KOG4422|consen 427 SAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKE 506 (625)
T ss_pred ceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 66677777777788887778888777777777766 43333333333333333332 0 1 1
Q ss_pred HHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCc
Q 003913 489 KAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYE 539 (787)
Q Consensus 489 ~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 539 (787)
.....-.+|.+.. . .....+.+.-.+.+.|..++|-++|....+++-.
T Consensus 507 ~~e~~~~R~r~~~-~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ 554 (625)
T KOG4422|consen 507 AYESQPIRQRAQD-W--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNK 554 (625)
T ss_pred HHHhhHHHHHhcc-C--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCc
Confidence 1111222344433 3 3445566666788999999999999988766543
No 28
>PF03161 LAGLIDADG_2: LAGLIDADG DNA endonuclease family; InterPro: IPR004860 This is a family of site-specific DNA endonucleases encoded by DNA mobile elements. Similar to the homing endonuclease LAGLIDADG/HNH domain (IPR001982 from INTERPRO), the members of this family are also LAGLIDADG endonucleases. ; GO: 0004519 endonuclease activity; PDB: 3OOR_A 3OOL_A 3C0W_A 1R7M_A 3C0X_A.
Probab=99.57 E-value=2.8e-14 Score=134.46 Aligned_cols=162 Identities=28% Similarity=0.454 Sum_probs=101.2
Q ss_pred HHHHHHHhhhhhhccchhhcceeEEEEEccCCcccHHHHHHHHHHchhhcCCCccc-----cCCCCC--cceEEeeeccc
Q 003913 573 ENLIGLLLGGLCIESDEKRKRHMIRFQFNENSRMHSVLRRYLYDQYHEWLHPSFKV-----SDGNDD--IPYKYSTISHP 645 (787)
Q Consensus 573 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~-----~~~~~~--~p~~~~t~~~~ 645 (787)
.++.+.||+.......-..+.-.++.... +. ...+-+.|.....+-...... .....+ ....+.|..++
T Consensus 3 ~ii~G~LLGDg~l~~~~~~~~~~~~~~~~--~~--~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~k~~~~~~f~T~~~~ 78 (178)
T PF03161_consen 3 SIIIGLLLGDGSLEKRGKGSRLRFQQSFK--QS--KEYVLHKYEILKGYCSSNPPPIKSRVGKRTGKIYKSYRFRTRSLP 78 (178)
T ss_dssp HHHHHHHHTT-EEE-SSTTS-BEEEEEES------HHHHHHHHHHTGGG--S----EEEEEE-TTS-EEEEEEEE---BG
T ss_pred EEEEEEEccCCEEEeCCCCceEEEEEccc--cH--HHHHHHHHHHhhhhhcCCcccceeeccccCCceeEEEEEEccchH
Confidence 56677777765544433333312223332 21 444556677766554433311 112222 34558999999
Q ss_pred hHHHHHHhhccCccc-ccccchhhcCChhHHHHHhhcCC---cccCCCcEEEEccCCHHHHHHHHHHHhhC-CCceEEEe
Q 003913 646 YFCFYADKFWPKGRL-VIPKLIHRWLTPRALAYWFMYGG---HRTSVGDILLKLKVSSEGIALVFKTLKAR-SLDCRVKK 720 (787)
Q Consensus 646 ~~~~~~~g~~~~a~~-~~~~mi~~gl~P~~lay~~m~~g---~~~~~g~~~~~~~g~~~e~~~l~~~l~~~-gl~~~~~~ 720 (787)
.|..+.+.+|.++.+ ++|+.+++.++|.++|||+|+|| .....|.++|+++++.+|++.|.+.|+.+ ||+|+|++
T Consensus 79 ~f~~l~~~fY~~~~Kk~ip~~I~~~LTp~~LA~W~mdDG~~~~~~~~g~~l~T~sFt~~Ev~~L~~~L~~kf~l~~~i~~ 158 (178)
T PF03161_consen 79 SFNELYELFYPNGKKKIIPENIHDYLTPLALAYWFMDDGYSKSKKGRGIRLCTNSFTKEEVERLQNILKTKFGLKCSIHK 158 (178)
T ss_dssp GGHHHHHHHBSSSSB---TTHHHHH--HHHHHHHHHHHE-STT-S---EEE--TTS-HHHHHHHHHHHHHHH---EEEEE
T ss_pred HHHHHHHeeeeCCCcccChHHHHHhcCHHHhhheeecCCeeecCCCCcEEEEECCCCHHHHHHHHHHHHHHhCeEEEEEE
Confidence 999999999999987 99999999999999999999999 34566777777777999999999999998 99999999
Q ss_pred cC--cEEEEEEeCCchHHHH
Q 003913 721 KG--RVFWIGFLGSNSTLFW 738 (787)
Q Consensus 721 ~~--~~~~i~~~~~~~~~~~ 738 (787)
++ .+|||||+++|+++|+
T Consensus 159 ~~~~~~y~i~i~~~s~~~f~ 178 (178)
T PF03161_consen 159 HGKKNQYRIYIPAKSMDKFR 178 (178)
T ss_dssp ET--TEEEEEE-GGGHHHHH
T ss_pred cCCCceEEEEEeHHHHhhhC
Confidence 99 7999999999999986
No 29
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.49 E-value=3.9e-11 Score=131.71 Aligned_cols=239 Identities=13% Similarity=0.104 Sum_probs=104.4
Q ss_pred CcchHHHHHHHhhcCChhHHHHHHHHHHhcCCCc-cCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCH--hHHHH
Q 003913 144 QEDGTYLAVHCMRIRENETGFRVYEWMMQQHWYR-FDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSE--MTFHI 220 (787)
Q Consensus 144 p~~~t~~~~~~~~~~~~~~A~~~~~~m~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~--~ty~~ 220 (787)
|+..+++.-.+--.|+++.++.+...+...-... .-...|--+..+|-..|++++|...|.+-.+.. ||. ..+--
T Consensus 270 P~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~G 347 (1018)
T KOG2002|consen 270 PVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVG 347 (1018)
T ss_pred cHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccc
Confidence 3333333334444555555555555554432000 001123334455555555555555555444432 222 22223
Q ss_pred HHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHH
Q 003913 221 LIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSG 300 (787)
Q Consensus 221 li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 300 (787)
|...+. +.|+++.|...|+..... .||..--..++..+....+ -.+-..+.|..++....+..+ .++-.+
T Consensus 348 lgQm~i---~~~dle~s~~~fEkv~k~---~p~~~etm~iLG~Lya~~~-~~~~~~d~a~~~l~K~~~~~~---~d~~a~ 417 (1018)
T KOG2002|consen 348 LGQMYI---KRGDLEESKFCFEKVLKQ---LPNNYETMKILGCLYAHSA-KKQEKRDKASNVLGKVLEQTP---VDSEAW 417 (1018)
T ss_pred hhHHHH---HhchHHHHHHHHHHHHHh---CcchHHHHHHHHhHHHhhh-hhhHHHHHHHHHHHHHHhccc---ccHHHH
Confidence 344444 455555555555555542 3444333333333222110 000123444444444433331 122222
Q ss_pred HHHHhhhccCCCHHHHHHHHH----HHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCCHH-----
Q 003913 301 LIWLHSYQDNIDKERISLLKK----EMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLES---DNGIPTP----- 368 (787)
Q Consensus 301 li~~~~~~~~g~~~~a~~l~~----~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~----- 368 (787)
+.....+- .++...++..|. .|...|-.+.....|.+.......|+++.|...|...... ...+|..
T Consensus 418 l~laql~e-~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~l 496 (1018)
T KOG2002|consen 418 LELAQLLE-QTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNL 496 (1018)
T ss_pred HHHHHHHH-hcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchh
Confidence 22222222 223333344443 2334455566667777777777777777777777666554 1112221
Q ss_pred --HHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 003913 369 --AFVYKMEAYAKIGEFMKSLEIFREMQER 396 (787)
Q Consensus 369 --~~~~li~~~~~~g~~~~A~~~~~~m~~~ 396 (787)
-|| +...+-..++.+.|.+.|..+.+.
T Consensus 497 t~~YN-larl~E~l~~~~~A~e~Yk~Ilke 525 (1018)
T KOG2002|consen 497 TLKYN-LARLLEELHDTEVAEEMYKSILKE 525 (1018)
T ss_pred HHHHH-HHHHHHhhhhhhHHHHHHHHHHHH
Confidence 222 334444445555555555555543
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.45 E-value=4e-09 Score=111.05 Aligned_cols=470 Identities=12% Similarity=0.046 Sum_probs=316.3
Q ss_pred HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHH----HHHCCCCCCHhHHHHHHHHHhcC
Q 003913 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDD----IINQGRVPSEMTFHILIVAYLSA 228 (787)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~----m~~~g~~pd~~ty~~li~~~~~~ 228 (787)
++++..-++.|..++....+. ++.+..+|.+-...=-..|+++...++.++ +...|+..+...|-.=..+|-
T Consensus 415 AlarLetYenAkkvLNkaRe~--iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e-- 490 (913)
T KOG0495|consen 415 ALARLETYENAKKVLNKAREI--IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE-- 490 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHhh--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh--
Confidence 555666667777777777665 566666666655555666777776666554 334566666666666666665
Q ss_pred CcCCCHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhh
Q 003913 229 PVQGCLDEACSIYNRMIQLGGYQPR--PSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHS 306 (787)
Q Consensus 229 ~~~g~~~~A~~l~~~m~~~~g~~pd--~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 306 (787)
+.|..--+..+.+..+.- |+.-. ..||+.--..|.+. +.++-|..+|...+..-+. +..++.... ..
T Consensus 491 -~agsv~TcQAIi~avigi-gvEeed~~~tw~~da~~~~k~------~~~~carAVya~alqvfp~-k~slWlra~--~~ 559 (913)
T KOG0495|consen 491 -DAGSVITCQAIIRAVIGI-GVEEEDRKSTWLDDAQSCEKR------PAIECARAVYAHALQVFPC-KKSLWLRAA--MF 559 (913)
T ss_pred -hcCChhhHHHHHHHHHhh-ccccchhHhHHhhhHHHHHhc------chHHHHHHHHHHHHhhccc-hhHHHHHHH--HH
Confidence 566666666666666543 33322 23555555556554 4677777777777654432 233333333 55
Q ss_pred hccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHH
Q 003913 307 YQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKS 386 (787)
Q Consensus 307 ~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 386 (787)
--..|..+....+|++.... ++-....|.....-+-..|++..|..++....+..+. +...|-.-+..-..+..++.|
T Consensus 560 ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~era 637 (913)
T KOG0495|consen 560 EKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERA 637 (913)
T ss_pred HHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHH
Confidence 56677788888899888875 3334556666777777889999999999999988755 788899999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003913 387 LEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPL-MPSYINLTNMYLNLGMHDRLHLAFSECLE 465 (787)
Q Consensus 387 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 465 (787)
..+|.+.... .|+...|.--+..---.+..++|.+++++.++. -|+ ...|..+.+.+-+.++++.|...|..-.+
T Consensus 638 R~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k 713 (913)
T KOG0495|consen 638 RDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK 713 (913)
T ss_pred HHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc
Confidence 9999988764 567777766666667778999999999998874 454 56788888999999999999999998888
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHH
Q 003913 466 KCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWM 545 (787)
Q Consensus 466 ~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~ 545 (787)
.|+-.+..|-.|.+.=-+.|.+-.|..+|++..-++ |-|...|...|..-.+.|+.+.|..+..+.++. -|..
T Consensus 714 ~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN--Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe----cp~s- 786 (913)
T KOG0495|consen 714 KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN--PKNALLWLESIRMELRAGNKEQAELLMAKALQE----CPSS- 786 (913)
T ss_pred cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC--CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCcc-
Confidence 888888999999999999999999999999999886 678899999999999999999999998888862 2221
Q ss_pred HHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhhhhccchhhcceeEEEEEccCCcccHHHHHHHHHHchhhcCCC
Q 003913 546 EKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIRFQFNENSRMHSVLRRYLYDQYHEWLHPS 625 (787)
Q Consensus 546 ~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~ 625 (787)
...|..-|......+.--....+ +.-...|+-....++.++-...+++.|.
T Consensus 787 ---------------------------g~LWaEaI~le~~~~rkTks~DA--Lkkce~dphVllaia~lfw~e~k~~kar 837 (913)
T KOG0495|consen 787 ---------------------------GLLWAEAIWLEPRPQRKTKSIDA--LKKCEHDPHVLLAIAKLFWSEKKIEKAR 837 (913)
T ss_pred ---------------------------chhHHHHHHhccCcccchHHHHH--HHhccCCchhHHHHHHHHHHHHHHHHHH
Confidence 12222222221111110000000 1111233334444555555556666666
Q ss_pred ccccCCCCCcceEEeeeccchHHHHHHhhccCcccccccchhhcCChhHHHHHhhc
Q 003913 626 FKVSDGNDDIPYKYSTISHPYFCFYADKFWPKGRLVIPKLIHRWLTPRALAYWFMY 681 (787)
Q Consensus 626 ~~~~~~~~~~p~~~~t~~~~~~~~~~~g~~~~a~~~~~~mi~~gl~P~~lay~~m~ 681 (787)
.-|.++.+..|+.-.+|....-....+|.-+.-+.++.+... .+|..--.|.-+
T Consensus 838 ~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~--~EP~hG~~W~av 891 (913)
T KOG0495|consen 838 EWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET--AEPTHGELWQAV 891 (913)
T ss_pred HHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc--cCCCCCcHHHHH
Confidence 666666666666555554444444555544444444444333 345444444433
No 31
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.43 E-value=8.9e-10 Score=119.04 Aligned_cols=285 Identities=9% Similarity=0.024 Sum_probs=211.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-cCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhcc
Q 003913 231 QGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALV-SKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQD 309 (787)
Q Consensus 231 ~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~-~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 309 (787)
.|++++|.+......+. .++...+ .++.+.+ ... |+.+.|...+.++.+.. |+...+..+.....+..
T Consensus 97 eGd~~~A~k~l~~~~~~---~~~p~l~-~llaA~aA~~~-----g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~ 165 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH---AEQPVVN-YLLAAEAAQQR-----GDEARANQHLERAAELA--DNDQLPVEITRVRIQLA 165 (398)
T ss_pred CCCHHHHHHHHHHHHhc---ccchHHH-HHHHHHHHHHC-----CCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHH
Confidence 58888888777765542 1222222 3333322 322 58888888888887643 44444444443567778
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHHcCC
Q 003913 310 NIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPT-------PAFVYKMEAYAKIGE 382 (787)
Q Consensus 310 ~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~g~ 382 (787)
.|+++.|...++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..++. .+|..++........
T Consensus 166 ~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~ 244 (398)
T PRK10747 166 RNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQG 244 (398)
T ss_pred CCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 888999999999888753 225667888899999999999999999999988755322 133334444444555
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003913 383 FMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSE 462 (787)
Q Consensus 383 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~ 462 (787)
.+...++++.+.+. .+.+......+..++...|+.++|..++++..+. .|+... .++.+....++.+++.+..+.
T Consensus 245 ~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~ 319 (398)
T PRK10747 245 SEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQ 319 (398)
T ss_pred HHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHH
Confidence 56666666666543 3447778888999999999999999999998873 455422 233444456899999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 463 CLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 463 m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
..+..+-|...+.++...+.+.|++++|.+.|+.+.+. .|+..+|..|...+.+.|+.++|.+++++-..
T Consensus 320 ~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~---~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 320 QIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ---RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 98877888899999999999999999999999999986 59999999999999999999999999997653
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.40 E-value=5.4e-09 Score=114.60 Aligned_cols=365 Identities=14% Similarity=0.050 Sum_probs=270.9
Q ss_pred hcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHH
Q 003913 156 RIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLD 235 (787)
Q Consensus 156 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~ 235 (787)
-.|++++|.+++.+++++. +.+...|-+|...|-..|+.+++...+-....... -|..-|-.+-.-.. +.|+++
T Consensus 151 arg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p-~d~e~W~~ladls~---~~~~i~ 224 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP-KDYELWKRLADLSE---QLGNIN 224 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC-CChHHHHHHHHHHH---hcccHH
Confidence 3499999999999999986 67888999999999999999999877655444322 26677888877777 899999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHH--HHhhhccCCCH
Q 003913 236 EACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLI--WLHSYQDNIDK 313 (787)
Q Consensus 236 ~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li--~~~~~~~~g~~ 313 (787)
+|.-+|.+.++. .|+..-+--==..+++.. |+...|..-|.++.......+-..+-.++ .++.+...++.
T Consensus 225 qA~~cy~rAI~~---~p~n~~~~~ers~L~~~~-----G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~ 296 (895)
T KOG2076|consen 225 QARYCYSRAIQA---NPSNWELIYERSSLYQKT-----GDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNER 296 (895)
T ss_pred HHHHHHHHHHhc---CCcchHHHHHHHHHHHHh-----ChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999984 565544333223344433 69999999999998877644444443333 24556667777
Q ss_pred HHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC---------------------------CC
Q 003913 314 ERISLLKKEMQQAG-FEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDN---------------------------GI 365 (787)
Q Consensus 314 ~~a~~l~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~---------------------------~~ 365 (787)
+.|.+.+......+ -.-+..+++.++..+.+...++.|......+..... .+
T Consensus 297 e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~ 376 (895)
T KOG2076|consen 297 ERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSY 376 (895)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCc
Confidence 88888887776632 334566788888999999999999888777766222 22
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003913 366 PTPAFVYKMEAYAKIGEFMKSLEIFREMQERL--GSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINL 443 (787)
Q Consensus 366 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 443 (787)
+..+ .-++-++......+....+.....+.. +.-+...|.-+..+|...|++.+|..+|..+...-..-+...|-.+
T Consensus 377 ~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~ 455 (895)
T KOG2076|consen 377 DLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKL 455 (895)
T ss_pred cchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHH
Confidence 2222 122333344344444444444445554 3334567888999999999999999999999986656678899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-------CCCCCHHHHHHHHHH
Q 003913 444 TNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ-------TIGVNTRSCNIILSA 516 (787)
Q Consensus 444 i~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~-------~~~p~~~t~~~li~~ 516 (787)
..+|-..|..+.|.+.|+..+...+-+..+--.|-..|-+.|+.++|.+.++.|..-+ ...|+...--.....
T Consensus 456 a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~ 535 (895)
T KOG2076|consen 456 ARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDI 535 (895)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHH
Confidence 9999999999999999999998777788888899999999999999999999965322 145566666677778
Q ss_pred HHcCCCHHHHHHHHHHHHH
Q 003913 517 YLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~ 535 (787)
+.+.|+.++=+.....|+.
T Consensus 536 l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 536 LFQVGKREEFINTASTLVD 554 (895)
T ss_pred HHHhhhHHHHHHHHHHHHH
Confidence 8899998887776666664
No 33
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.38 E-value=2e-09 Score=117.04 Aligned_cols=289 Identities=9% Similarity=0.020 Sum_probs=208.5
Q ss_pred cCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhcc
Q 003913 230 VQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQD 309 (787)
Q Consensus 230 ~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 309 (787)
..|+++.|.+.+.+..+ ..|+...+..+..-.+... |+.+.|.+.+.+..+... +......+.....+..
T Consensus 96 ~~g~~~~A~~~l~~~~~---~~~~~~~~~llaA~aa~~~-----g~~~~A~~~l~~a~~~~p--~~~l~~~~~~a~l~l~ 165 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNAD---HAAEPVLNLIKAAEAAQQR-----GDEARANQHLEEAAELAG--NDNILVEIARTRILLA 165 (409)
T ss_pred hCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHhCC--cCchHHHHHHHHHHHH
Confidence 47999999999988765 3566554444433333332 589999999999876543 3322223323466677
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH-HHHHH---HHcCChHH
Q 003913 310 NIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVY-KMEAY---AKIGEFMK 385 (787)
Q Consensus 310 ~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-li~~~---~~~g~~~~ 385 (787)
.|+++.|...++.+.+.. +-+..+...+...+...|++++|.+.+..+.+.+.. +...+.. -..++ ...+..++
T Consensus 166 ~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~ 243 (409)
T TIGR00540 166 QNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADE 243 (409)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhc
Confidence 899999999999999864 225667889999999999999999999999998754 3333321 12222 33333344
Q ss_pred HHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHH--HhcCCHHHHHHH
Q 003913 386 SLEIFREMQERLG---SASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPS-YINLTNMY--LNLGMHDRLHLA 459 (787)
Q Consensus 386 A~~~~~~m~~~g~---~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~li~~~--~~~g~~~~a~~~ 459 (787)
+.+.+..+..... +.+...+..+...+...|+.++|.+++++..+.. ||... ...++..+ ...++.+.+.+.
T Consensus 244 ~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~ 321 (409)
T TIGR00540 244 GIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKL 321 (409)
T ss_pred CHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHH
Confidence 4456666554421 1377888899999999999999999999999853 33321 11133333 345778889999
Q ss_pred HHHHHhcCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHH--hhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 460 FSECLEKCRPNR--TIYGIYLESLKNAGNIEKAEEIFNH--MHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 460 ~~~m~~~~~p~~--~~~~~li~~~~~~g~~~~A~~l~~~--m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
++...+..+-|. ....++...+.+.|++++|.+.|+. ..+ ..|+...+..+...+.+.|+.++|.+++++-..
T Consensus 322 ~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~---~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 322 IEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACK---EQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhh---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 988887666666 7788999999999999999999995 544 358999999999999999999999999998653
No 34
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.37 E-value=8e-12 Score=132.25 Aligned_cols=284 Identities=10% Similarity=-0.021 Sum_probs=216.7
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChH-HHHH
Q 003913 312 DKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDN--GIPTPAFVYKMEAYAKIGEFM-KSLE 388 (787)
Q Consensus 312 ~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~-~A~~ 388 (787)
...+|..+|...... +.-+..+..-+..+|...+++++|+++|+.+.+..+ .-+...|.+.+--+-+.=.+. -|.+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 367888888884443 333456777889999999999999999999988642 126677887765543321111 1222
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 003913 389 IFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKP-LMPSYINLTNMYLNLGMHDRLHLAFSECLEKC 467 (787)
Q Consensus 389 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~ 467 (787)
+.+.+ +-...+|.++.+.|.-.++.+.|++.|++.++ +.| ..++|+.+.+-+.....+|.|...|+..+.-.
T Consensus 413 Li~~~-----~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 413 LIDTD-----PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHhhC-----CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 33222 22578999999999999999999999999997 456 68999999999999999999999999988644
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHH
Q 003913 468 RPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEK 547 (787)
Q Consensus 468 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~ 547 (787)
+.+--+|-.|...|.+.++++.|+-.|++..+.+ |-|.+....+...+-+.|+.|+|+.++++... ++|..
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN--P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~----ld~kn--- 556 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN--PSNSVILCHIGRIQHQLKRKDKALQLYEKAIH----LDPKN--- 556 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC--ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh----cCCCC---
Confidence 5556667778899999999999999999999986 56788888888999999999999999999986 55531
Q ss_pred HHHHHhhcccccccccccCCchHHHHHHHHHHhhhhhhccchhhcceeEE--EEEccCCcccHHHHHHHHHHchhhcCCC
Q 003913 548 LDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPS 625 (787)
Q Consensus 548 l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--~~~~p~~~~~~~~l~~~y~~~g~~~~A~ 625 (787)
|-..... ...+...++.++|...++ .++-|++...+.+++.+|.+.|+.+.|+
T Consensus 557 -----------------------~l~~~~~--~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al 611 (638)
T KOG1126|consen 557 -----------------------PLCKYHR--ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLAL 611 (638)
T ss_pred -----------------------chhHHHH--HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHH
Confidence 0011111 112223456677777776 6778999999999999999999999998
Q ss_pred ccccCCCCCcce
Q 003913 626 FKVSDGNDDIPY 637 (787)
Q Consensus 626 ~~~~~~~~~~p~ 637 (787)
..+--+...+|.
T Consensus 612 ~~f~~A~~ldpk 623 (638)
T KOG1126|consen 612 LHFSWALDLDPK 623 (638)
T ss_pred HhhHHHhcCCCc
Confidence 888766666665
No 35
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.37 E-value=6.4e-11 Score=118.79 Aligned_cols=448 Identities=13% Similarity=0.084 Sum_probs=231.9
Q ss_pred hHHHHH-----HHhhcCChhHHHHHHHHHHhcCCCccCHHH-HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCH-----
Q 003913 147 GTYLAV-----HCMRIRENETGFRVYEWMMQQHWYRFDFAL-ATKLADYMGKERKFAKCRDIFDDIINQGRVPSE----- 215 (787)
Q Consensus 147 ~t~~~~-----~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~----- 215 (787)
.||.++ .+.......+|+..++.+++.. .-|+.-. --.+-..+.|.+.+.+|++.++-...+ .|++
T Consensus 199 ltfsvl~nlaqqy~~ndm~~ealntyeiivknk-mf~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsink~~r 275 (840)
T KOG2003|consen 199 LTFSVLFNLAQQYEANDMTAEALNTYEIIVKNK-MFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSINKDMR 275 (840)
T ss_pred chHHHHHHHHHHhhhhHHHHHHhhhhhhhhccc-ccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccchhhH
Confidence 466655 3334456778899999888876 4444432 223455678889999999988766654 2322
Q ss_pred -hHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCcc
Q 003913 216 -MTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSL-HNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEI 293 (787)
Q Consensus 216 -~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t-~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p 293 (787)
...|.+-..+. +.|+++.|+..|++..+. .|+..+ +|.+|.++|- |+-++..+.|..|+.....|
T Consensus 276 ikil~nigvtfi---q~gqy~dainsfdh~m~~---~pn~~a~~nl~i~~f~i-------~d~ekmkeaf~kli~ip~~~ 342 (840)
T KOG2003|consen 276 IKILNNIGVTFI---QAGQYDDAINSFDHCMEE---APNFIAALNLIICAFAI-------GDAEKMKEAFQKLIDIPGEI 342 (840)
T ss_pred HHHHhhcCeeEE---ecccchhhHhhHHHHHHh---CccHHhhhhhhhhheec-------CcHHHHHHHHHHHhcCCCCC
Confidence 33455555566 899999999999998874 588664 6666766664 58888999999988765544
Q ss_pred CHH------------HHHHHHHHhhh-----ccCCCHHHHHHHHHHHHHcCCCCCHHH----HH----------------
Q 003913 294 QKD------------IYSGLIWLHSY-----QDNIDKERISLLKKEMQQAGFEEGKEV----LL---------------- 336 (787)
Q Consensus 294 ~~~------------~~~~li~~~~~-----~~~g~~~~a~~l~~~m~~~g~~p~~~t----~~---------------- 336 (787)
|.+ ..+-.+.-..+ .+..+.+++.-.-..+..--+.||-.. +.
T Consensus 343 dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dle 422 (840)
T KOG2003|consen 343 DDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLE 422 (840)
T ss_pred CcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhh
Confidence 433 22222211100 011111222111112221112222110 00
Q ss_pred -HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003913 337 -SVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAK--IGEFMKSLEIFREMQERLGSASVPAYHKIIELLC 413 (787)
Q Consensus 337 -~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 413 (787)
.-..-+.+.|+++.|.++++-+.+..-+.-...-|.|-..+.- ..++..|..+-+...... +-|....+.-...-.
T Consensus 423 i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f 501 (840)
T KOG2003|consen 423 INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAF 501 (840)
T ss_pred hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceee
Confidence 0112355888888888888877766533323333333222222 234555555544443220 112222222223334
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003913 414 KAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEI 493 (787)
Q Consensus 414 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l 493 (787)
.+|++++|.+.+++.+...- .-......+.-.+-..|++++|+..|-++..-...+..+.-.+...|--..+...|+++
T Consensus 502 ~ngd~dka~~~ykeal~nda-sc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDA-SCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred ecCcHHHHHHHHHHHHcCch-HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 45666666666666655331 11222333334455666666666666665443344555555566666666666666666
Q ss_pred HHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHH---hhcccc---cccccccCC
Q 003913 494 FNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVL---SLNRKE---VKKPVSLNL 567 (787)
Q Consensus 494 ~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~---~l~~~~---~~~~~~~~l 567 (787)
+-+.... ++.|......|...|-+.|+-..|.+++-+--+ -++-+-.+++-+...+ +..++. +++...++
T Consensus 581 ~~q~~sl--ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliq- 656 (840)
T KOG2003|consen 581 LMQANSL--IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ- 656 (840)
T ss_pred HHHhccc--CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC-
Confidence 6555544 555666666666666666666666665443331 1212222222111110 011111 11100111
Q ss_pred chHHHHHHHHHHhhhhh-hccchhhcceeEE--EEEccCCcccHHHHHHHHHHch
Q 003913 568 SSEQRENLIGLLLGGLC-IESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYH 619 (787)
Q Consensus 568 ~~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~--~~~~p~~~~~~~~l~~~y~~~g 619 (787)
|+.+-|..++..|. +.|++++|...++ -..-|.+....-.|..++...|
T Consensus 657 ---p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 657 ---PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred ---ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence 23566776666553 4567777766665 2333555555555555555444
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.36 E-value=4.7e-12 Score=130.53 Aligned_cols=254 Identities=11% Similarity=0.072 Sum_probs=115.0
Q ss_pred hhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003913 274 YYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEK 353 (787)
Q Consensus 274 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ 353 (787)
|++++|.+++.........|+...|-. ..+......++.+.|...++++...+.. +...+..++.. ...+++++|.+
T Consensus 22 ~~~~~Al~~L~~~~~~~~~~~~~~~~~-~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~ 98 (280)
T PF13429_consen 22 GDYEKALEVLKKAAQKIAPPDDPEYWR-LLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALK 98 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc-cccccccccccccccccccccccccccc-ccccccccccc-ccccccccccc
Confidence 699999999966554442333333322 2235566778899999999999876533 45566677766 78999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003913 354 TWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERL-GSASVPAYHKIIELLCKAEETELTESLMKEFVETG 432 (787)
Q Consensus 354 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g 432 (787)
++....+.. ++...+..++..+.+.++++++.++++++.... .+.+...|..+...+.+.|+.++|.+.+++.++..
T Consensus 99 ~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~ 176 (280)
T PF13429_consen 99 LAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD 176 (280)
T ss_dssp ---------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-
T ss_pred ccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 988776654 356677788899999999999999999987532 34577788889999999999999999999999853
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHH
Q 003913 433 MKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNI 512 (787)
Q Consensus 433 ~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ 512 (787)
+-|......++..+...|+.+++.+++....+..+.|...|..+..+|...|+.++|+.+|++..+.. +.|......
T Consensus 177 -P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~--p~d~~~~~~ 253 (280)
T PF13429_consen 177 -PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN--PDDPLWLLA 253 (280)
T ss_dssp -TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS--TT-HHHHHH
T ss_pred -CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc--ccccccccc
Confidence 33578888999999999999999999988887557777889999999999999999999999998874 558888889
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHH
Q 003913 513 ILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
+..++...|+.++|..+.++..+
T Consensus 254 ~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 254 YADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHT-----------------
T ss_pred ccccccccccccccccccccccc
Confidence 99999999999999999887653
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.36 E-value=4e-12 Score=131.05 Aligned_cols=256 Identities=14% Similarity=0.147 Sum_probs=114.9
Q ss_pred HhhhccCCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 003913 304 LHSYQDNIDKERISLLKKEMQQAGFEEGKEV-LLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGE 382 (787)
Q Consensus 304 ~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 382 (787)
+..+.+.|++++|++++++-....-.|+... |..+...+-..++.+.|.+.++++.+.+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 4667788999999999976554432454444 445555667799999999999999988754 56667777777 79999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003913 383 FMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETG-MKPLMPSYINLTNMYLNLGMHDRLHLAFS 461 (787)
Q Consensus 383 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~a~~~~~ 461 (787)
+++|.+++++..++. ++...+..++..+...++++++..+++.+.... .+.+...|..+...+.+.|+.++|.+.++
T Consensus 93 ~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999998876653 466778889999999999999999999987632 45678889999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccC
Q 003913 462 ECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIE 541 (787)
Q Consensus 462 ~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 541 (787)
+.++..+.|....+.++..+...|+.+++.++++...+.. +.|...|..+..+|...|+.++|+.+|++..+ ..
T Consensus 171 ~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~----~~ 244 (280)
T PF13429_consen 171 KALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEKALK----LN 244 (280)
T ss_dssp HHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH----HS
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhcccccccccccccccccc----cc
Confidence 9998777789999999999999999999999999988763 56778899999999999999999999999986 34
Q ss_pred HHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhhhhccchhhcceeEE
Q 003913 542 SAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR 597 (787)
Q Consensus 542 p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 597 (787)
|+ |..+...+..++...|+.++|..+.+
T Consensus 245 p~----------------------------d~~~~~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 245 PD----------------------------DPLWLLAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp TT-----------------------------HHHHHHHHHHHT-------------
T ss_pred cc----------------------------cccccccccccccccccccccccccc
Confidence 43 24556667777777787777776654
No 38
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.34 E-value=1.9e-09 Score=116.42 Aligned_cols=283 Identities=12% Similarity=0.125 Sum_probs=192.0
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHh-cCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHH--HHHHcCCC
Q 003913 193 ERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYL-SAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLF--RALVSKPG 269 (787)
Q Consensus 193 ~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~-~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll--~~~~~~~~ 269 (787)
.|+++.|++.+..-.+..- +...+ .++.+.. . +.|++++|.+.|.++.+ ..|+...+..+. ..+...
T Consensus 97 eGd~~~A~k~l~~~~~~~~--~p~l~-~llaA~aA~--~~g~~~~A~~~l~~A~~---~~~~~~~~~~l~~a~l~l~~-- 166 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAE--QPVVN-YLLAAEAAQ--QRGDEARANQHLERAAE---LADNDQLPVEITRVRIQLAR-- 166 (398)
T ss_pred CCCHHHHHHHHHHHHhccc--chHHH-HHHHHHHHH--HCCCHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHC--
Confidence 5888888877777665421 12222 2222222 2 67888888888888875 356654333222 122222
Q ss_pred CCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHH
Q 003913 270 GLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGK-------EVLLSVLRVC 342 (787)
Q Consensus 270 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~-------~t~~~li~~~ 342 (787)
|++++|...++.+.+.++. +......+. ..+.+.|++++|.+++..+.+.+..++. .+|..++...
T Consensus 167 ----g~~~~Al~~l~~~~~~~P~-~~~al~ll~--~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 167 ----NENHAARHGVDKLLEVAPR-HPEVLRLAE--QAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred ----CCHHHHHHHHHHHHhcCCC-CHHHHHHHH--HHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888776643 334444444 6677778888888888888877654322 2334444444
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003913 343 AKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTE 422 (787)
Q Consensus 343 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 422 (787)
....+.+...++++.+.+.- ..+......+...+...|+.++|.+++++..+. .||... .++.+.+..++.+++.
T Consensus 240 ~~~~~~~~l~~~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al 314 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLE 314 (398)
T ss_pred HHhcCHHHHHHHHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHH
Confidence 45556666777777665432 236777788889999999999999999888874 444422 2344555668888898
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 003913 423 SLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (787)
Q Consensus 423 ~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (787)
+..+...+.. +-|...+..+...|.+.+++++|.+.|+...+ ..|+..+|..|...+.+.|+.++|.+++++-..
T Consensus 315 ~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~-~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 315 KVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK-QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8888888753 44567788888999999999999999998876 468888888899999999999999998887654
No 39
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.33 E-value=9.3e-09 Score=112.75 Aligned_cols=329 Identities=16% Similarity=0.147 Sum_probs=248.1
Q ss_pred HHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 003913 188 DYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSK 267 (787)
Q Consensus 188 ~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~ 267 (787)
..+.-.|++++|.+++.+.++.... +...|-+|-..|- +.|+.++++..+-..-. +.|...-+-..+.-+...
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyE---qrGd~eK~l~~~llAAH---L~p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYE---QRGDIEKALNFWLLAAH---LNPKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHH---HcccHHHHHHHHHHHHh---cCCCChHHHHHHHHHHHh
Confidence 3344459999999999999987543 6788999999998 89999999987766654 455544443444444444
Q ss_pred CCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHH
Q 003913 268 PGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVL----LSVLRVCA 343 (787)
Q Consensus 268 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~----~~li~~~~ 343 (787)
. |++.+|.-.|.+.++..+.-....|... ..|.+.|+..+|..-|.++...--..|..-+ -.++..+.
T Consensus 220 ~-----~~i~qA~~cy~rAI~~~p~n~~~~~ers---~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~ 291 (895)
T KOG2076|consen 220 L-----GNINQARYCYSRAIQANPSNWELIYERS---SLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFI 291 (895)
T ss_pred c-----ccHHHHHHHHHHHHhcCCcchHHHHHHH---HHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHH
Confidence 3 6999999999999998876555555443 5678899999999999999885322222223 34456666
Q ss_pred hcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC------------------------
Q 003913 344 KEGDVEDAEKTWLRLLES-DNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLG------------------------ 398 (787)
Q Consensus 344 ~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------------------------ 398 (787)
..++-+.|.+.++..... +-..+...++.++..|.+...++.|......+.....
T Consensus 292 ~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~ 371 (895)
T KOG2076|consen 292 THNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVG 371 (895)
T ss_pred HhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCC
Confidence 778779999988877763 2234567788999999999999999999988876222
Q ss_pred ---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCHH
Q 003913 399 ---SASVPAYHKIIELLCKAEETELTESLMKEFVETGMKP--LMPSYINLTNMYLNLGMHDRLHLAFSECLE-KCRPNRT 472 (787)
Q Consensus 399 ---~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-~~~p~~~ 472 (787)
.++... --+.-++......+....+.....+..+.| +...|.-+..+|...|++.+|..+|..+.. -..-+..
T Consensus 372 ~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~ 450 (895)
T KOG2076|consen 372 KELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAF 450 (895)
T ss_pred CCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchh
Confidence 222222 123334455555666666666677666444 567899999999999999999999999987 3445688
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003913 473 IYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (787)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (787)
.|--+..+|...|.+++|.+.|++..... |-+...--+|-..+-+.|+.++|.+.++.|.
T Consensus 451 vw~~~a~c~~~l~e~e~A~e~y~kvl~~~--p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 451 VWYKLARCYMELGEYEEAIEFYEKVLILA--PDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 99999999999999999999999999874 4456667778888999999999999999886
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=3.2e-08 Score=100.60 Aligned_cols=354 Identities=11% Similarity=0.077 Sum_probs=233.8
Q ss_pred HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHH--HHHHHHhcCCc
Q 003913 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFH--ILIVAYLSAPV 230 (787)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~--~li~~~~~~~~ 230 (787)
...+.|....|...|...+.. .+..-..|..|.... -+.+.+..+-...+. |..-.. -+..++- .
T Consensus 173 v~k~~~~~s~A~~sfv~~v~~--~P~~W~AWleL~~li---t~~e~~~~l~~~l~~-----~~h~M~~~F~~~a~~---e 239 (559)
T KOG1155|consen 173 VLKELGLLSLAIDSFVEVVNR--YPWFWSAWLELSELI---TDIEILSILVVGLPS-----DMHWMKKFFLKKAYQ---E 239 (559)
T ss_pred HHHhhchHHHHHHHHHHHHhc--CCcchHHHHHHHHhh---chHHHHHHHHhcCcc-----cchHHHHHHHHHHHH---H
Confidence 455667777777777777665 244444444443332 233333222211111 111111 1222333 3
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCc--cCHHHHHHHHHHhhhc
Q 003913 231 QGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLE--IQKDIYSGLIWLHSYQ 308 (787)
Q Consensus 231 ~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~ 308 (787)
..+.+++++-....... |+ |+..-+.+.+.++.-.. .++++|+.+|+++.+.++- -|.++|+-.+ +...
T Consensus 240 l~q~~e~~~k~e~l~~~-gf-~~~~~i~~~~A~~~y~~-----rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~ 310 (559)
T KOG1155|consen 240 LHQHEEALQKKERLSSV-GF-PNSMYIKTQIAAASYNQ-----RDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHhc-cC-CccHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHh
Confidence 45677777766666654 44 44433444444443332 4899999999999887532 2567777665 3322
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 003913 309 DNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLE 388 (787)
Q Consensus 309 ~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 388 (787)
... .+..+.+-.-.=-+--..|+..+.+-|+-.++-++|...|++.++.++. ...+|+.|..-|....+...|.+
T Consensus 311 ~~s----kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 311 DKS----KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred hhH----HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHH
Confidence 211 1122211111111223457778888888889999999999999988765 56788888999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 003913 389 IFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCR 468 (787)
Q Consensus 389 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 468 (787)
-++...+-+ +.|-..|-.|.++|.-.+...-|+-.|++..+.. +-|...+.+|..+|.+.++.++|++.|........
T Consensus 386 sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d 463 (559)
T KOG1155|consen 386 SYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD 463 (559)
T ss_pred HHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc
Confidence 999988764 3478889999999999999999999999888743 34688999999999999999999999999887545
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh----CCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 469 PNRTIYGIYLESLKNAGNIEKAEEIFNHMHS----DQTIGVN-TRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 469 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~~~~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
.+...+..|.+.|-+.++.++|...|++-++ .|.+.|. .....-|..-+.+.+++++|..+......
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 5778899999999999999999988887655 3323332 22333355667788899998887777664
No 41
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.33 E-value=8.7e-09 Score=103.73 Aligned_cols=255 Identities=13% Similarity=0.091 Sum_probs=177.0
Q ss_pred hhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003913 274 YYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEK 353 (787)
Q Consensus 274 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ 353 (787)
|+++.|.+++.-+.+.+-..-...-+.|..++......++..|...-+...... +-+......--+.....|++++|.+
T Consensus 433 ~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~ 511 (840)
T KOG2003|consen 433 GDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAE 511 (840)
T ss_pred cCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHH
Confidence 466666666665555444333333333333333444444445444433332210 0111111111122235789999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 003913 354 TWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGM 433 (787)
Q Consensus 354 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 433 (787)
.+++.+...-.-....|| +.-.+-+.|++++|++.|-++..- +.-+......+.+.|-...+..+|.+++-+.... +
T Consensus 512 ~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-i 588 (840)
T KOG2003|consen 512 FYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-I 588 (840)
T ss_pred HHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-C
Confidence 999988764322222333 344577889999999999887543 1226667777888899999999999998766542 4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHH
Q 003913 434 KPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNII 513 (787)
Q Consensus 434 ~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~l 513 (787)
+.|+.+..-|...|-+.|+-..|.+.+-.--+-++-|..+..-|..-|....-+++|+..|++..- ++|+..-|-.|
T Consensus 589 p~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal---iqp~~~kwqlm 665 (840)
T KOG2003|consen 589 PNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL---IQPNQSKWQLM 665 (840)
T ss_pred CCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh---cCccHHHHHHH
Confidence 556889999999999999999999988877777788999999999999999999999999998865 68999999999
Q ss_pred HHHH-HcCCCHHHHHHHHHHHHH
Q 003913 514 LSAY-LSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 514 i~~~-~~~g~~~~A~~~~~~m~~ 535 (787)
|..| .+.|++.+|..+|+...+
T Consensus 666 iasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 666 IASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred HHHHHHhcccHHHHHHHHHHHHH
Confidence 8755 578999999999999885
No 42
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.33 E-value=2.4e-08 Score=105.39 Aligned_cols=453 Identities=12% Similarity=0.051 Sum_probs=289.4
Q ss_pred cCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHHH
Q 003913 157 IRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDE 236 (787)
Q Consensus 157 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~~ 236 (787)
.-..+.|+-++.+.++. ++.+...|. +|++..-++.|.++++..++. +.-+...|.+.-.-=- ++|+.+.
T Consensus 389 lE~~~darilL~rAvec--cp~s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE---~ngn~~m 458 (913)
T KOG0495|consen 389 LEEPEDARILLERAVEC--CPQSMDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEE---ANGNVDM 458 (913)
T ss_pred ccChHHHHHHHHHHHHh--ccchHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHH---hcCCHHH
Confidence 34445566666666664 333443333 345556677777777777654 4445666655444444 5677777
Q ss_pred HHHHHHHHHH---hCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCH
Q 003913 237 ACSIYNRMIQ---LGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDK 313 (787)
Q Consensus 237 A~~l~~~m~~---~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~ 313 (787)
..++..+-.. ..|+..+..-|-.=-.+|-.. |.+-.+..+....+..|+.-...--+++-....|.+.+..
T Consensus 459 v~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~a------gsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~ 532 (913)
T KOG0495|consen 459 VEKIIDRGLSELQANGVEINRDQWLKEAEACEDA------GSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAI 532 (913)
T ss_pred HHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhc------CChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchH
Confidence 7777665432 135666655555544455443 4566666666666766766555555666666777777777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003913 314 ERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREM 393 (787)
Q Consensus 314 ~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 393 (787)
+-|..+|....+. +.-+...|......=-..|..+.-..++++....-++ ....|-....-+-..|++..|..++...
T Consensus 533 ~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pk-ae~lwlM~ake~w~agdv~~ar~il~~a 610 (913)
T KOG0495|consen 533 ECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK-AEILWLMYAKEKWKAGDVPAARVILDQA 610 (913)
T ss_pred HHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 7777777766653 2234555666665556677777777777777766443 3455655566677778888888888877
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q 003913 394 QERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTI 473 (787)
Q Consensus 394 ~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~ 473 (787)
.+.... +...|-+-+..-..+.+++.|..+|.+... ..|+...|.--++.---.++.++|.+++++.++.++.-...
T Consensus 611 f~~~pn-seeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl 687 (913)
T KOG0495|consen 611 FEANPN-SEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKL 687 (913)
T ss_pred HHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHH
Confidence 766433 566777777777888888888888877765 45667777766666667778888888888877766666667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHh
Q 003913 474 YGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLS 553 (787)
Q Consensus 474 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~ 553 (787)
|-.+...+-+.++++.|.+.|..=.+. +|-..-.|..|...=-+.|.+-+|..++++... -+|.
T Consensus 688 ~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~~ipLWllLakleEk~~~~~rAR~ildrarl----kNPk---------- 751 (913)
T KOG0495|consen 688 WLMLGQIEEQMENIEMAREAYLQGTKK--CPNSIPLWLLLAKLEEKDGQLVRARSILDRARL----KNPK---------- 751 (913)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhcccc--CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh----cCCC----------
Confidence 777788888888888888887776665 555566777777777777788888888887765 3444
Q ss_pred hcccccccccccCCchHHHHHHHHHHhhhhhhccchhhcceeEE--EEEccCCcccHHHHHHHHHHchhhcCCCccccCC
Q 003913 554 LNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSFKVSDG 631 (787)
Q Consensus 554 l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~~ 631 (787)
+...|...+..-.+.|+.+.|..+.. ++-.|.+...+.--+.+...-++-..+...+ +.
T Consensus 752 ------------------~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DAL-kk 812 (913)
T KOG0495|consen 752 ------------------NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDAL-KK 812 (913)
T ss_pred ------------------cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHH-Hh
Confidence 26778888888888888888877655 5555655544443333333222211111111 11
Q ss_pred CCCcceEEeeeccchHHHHHHhhccCcccccccchhh
Q 003913 632 NDDIPYKYSTISHPYFCFYADKFWPKGRLVIPKLIHR 668 (787)
Q Consensus 632 ~~~~p~~~~t~~~~~~~~~~~g~~~~a~~~~~~mi~~ 668 (787)
.+.+ ...+....-.|..+..++++.+-|.+.+..
T Consensus 813 ce~d---phVllaia~lfw~e~k~~kar~Wf~Ravk~ 846 (913)
T KOG0495|consen 813 CEHD---PHVLLAIAKLFWSEKKIEKAREWFERAVKK 846 (913)
T ss_pred ccCC---chhHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 1222 223334445677777788888888887764
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=2.5e-08 Score=101.38 Aligned_cols=327 Identities=12% Similarity=0.069 Sum_probs=237.3
Q ss_pred ccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHH
Q 003913 177 RFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSL 256 (787)
Q Consensus 177 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t 256 (787)
..|.+.+-..--.+-+.|....|+..|-..... -+..|.+-+.-.- -....+.+. .... |...|...
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~---lit~~e~~~----~l~~--~l~~~~h~ 227 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSE---LITDIEILS----ILVV--GLPSDMHW 227 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHH---hhchHHHHH----HHHh--cCcccchH
Confidence 445554444445566788899999999888764 2334444333222 112222222 2221 22222211
Q ss_pred HH--HHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCC----
Q 003913 257 HN--SLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEE---- 330 (787)
Q Consensus 257 ~~--~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p---- 330 (787)
+. .+..++-.. .+.+++.+-.+.....|+.-+...-+... .+.....|++.|+.+|+++.+. .|
T Consensus 228 M~~~F~~~a~~el------~q~~e~~~k~e~l~~~gf~~~~~i~~~~A--~~~y~~rDfD~a~s~Feei~kn--DPYRl~ 297 (559)
T KOG1155|consen 228 MKKFFLKKAYQEL------HQHEEALQKKERLSSVGFPNSMYIKTQIA--AASYNQRDFDQAESVFEEIRKN--DPYRLD 297 (559)
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHhccCCccHHHHHHHH--HHHhhhhhHHHHHHHHHHHHhc--CCCcch
Confidence 11 122233222 36777888888888888765444444443 5666778999999999999987 44
Q ss_pred CHHHHHHHHHHHHhcCChH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003913 331 GKEVLLSVLRVCAKEGDVE-DAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKII 409 (787)
Q Consensus 331 ~~~t~~~li~~~~~~g~~~-~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 409 (787)
|..+|+.++-+--...++. .|..++ .+- .. -+.|..++.+-|+-.++.++|...|++..+-+.+ ....|+-|.
T Consensus 298 dmdlySN~LYv~~~~skLs~LA~~v~-~id--Ky--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmG 371 (559)
T KOG1155|consen 298 DMDLYSNVLYVKNDKSKLSYLAQNVS-NID--KY--RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMG 371 (559)
T ss_pred hHHHHhHHHHHHhhhHHHHHHHHHHH-Hhc--cC--CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhh
Confidence 6788988876544333332 233332 222 22 2467778888999999999999999999886433 567899999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHH
Q 003913 410 ELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEK 489 (787)
Q Consensus 410 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~ 489 (787)
+-|....+...|.+-++..++-. +-|-..|-.|.++|.-.+++.-|+-.|++..+-.+-|...|.+|.+.|.+.++.++
T Consensus 372 HEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~e 450 (559)
T KOG1155|consen 372 HEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEE 450 (559)
T ss_pred HHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHH
Confidence 99999999999999999999853 55889999999999999999999999999988667789999999999999999999
Q ss_pred HHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 490 AEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 490 A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
|++.|.....-|. .+...+..|...|-+.++.++|...|++-++
T Consensus 451 AiKCykrai~~~d--te~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 451 AIKCYKRAILLGD--TEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHhccc--cchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999872 3668999999999999999999999988775
No 44
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.32 E-value=1.6e-09 Score=117.73 Aligned_cols=538 Identities=12% Similarity=0.023 Sum_probs=300.3
Q ss_pred hHHHHHHhhccccCCcchHHHHH--HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHH
Q 003913 130 TLVRILNAQKKWLRQEDGTYLAV--HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDII 207 (787)
Q Consensus 130 ~~~~~l~~~~~~~~p~~~t~~~~--~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 207 (787)
.|+..++ ..|+.|+.+||..+ .++..|+.+.|- +|..|.-+. .+.+..+++.++......++.+.|.
T Consensus 11 nfla~~e--~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ks-Lpv~e~vf~~lv~sh~~And~Enpk------- 79 (1088)
T KOG4318|consen 11 NFLALHE--ISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS-LPVREGVFRGLVASHKEANDAENPK------- 79 (1088)
T ss_pred hHHHHHH--HhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccc-ccccchhHHHHHhcccccccccCCC-------
Confidence 3444443 45799999999887 788999999998 999998887 7888999999999999999988887
Q ss_pred HCCCCCCHhHHHHHHHHHhcCCcCCCHHH---HHHHHHHHHHh---CCCCCCHHHHHHHHHHHHcCCCC--------CCh
Q 003913 208 NQGRVPSEMTFHILIVAYLSAPVQGCLDE---ACSIYNRMIQL---GGYQPRPSLHNSLFRALVSKPGG--------LSK 273 (787)
Q Consensus 208 ~~g~~pd~~ty~~li~~~~~~~~~g~~~~---A~~l~~~m~~~---~g~~pd~~t~~~ll~~~~~~~~~--------~~~ 273 (787)
.|...||+.|+.+|. +.|++.. +.+.+...... .|+---..-+-..+.++-..... ..+
T Consensus 80 ----ep~aDtyt~Ll~ayr---~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~e 152 (1088)
T KOG4318|consen 80 ----EPLADTYTNLLKAYR---IHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLE 152 (1088)
T ss_pred ----CCchhHHHHHHHHHH---hccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHH
Confidence 578899999999999 7888655 33322222221 12111111121111211110000 001
Q ss_pred hhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCChHHHH
Q 003913 274 YYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGF-EEGKEVLLSVLRVCAKEGDVEDAE 352 (787)
Q Consensus 274 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~-~p~~~t~~~li~~~~~~g~~~~A~ 352 (787)
|.++.+.+++..+....-. ......+ .-+... ..-..++.. |.+.+. .|+..+|..++.+-...|+++.|.
T Consensus 153 glwaqllkll~~~Pvsa~~---~p~~vfL--rqnv~~--ntpvekLl~-~cksl~e~~~s~~l~a~l~~alaag~~d~Ak 224 (1088)
T KOG4318|consen 153 GLWAQLLKLLAKVPVSAWN---APFQVFL--RQNVVD--NTPVEKLLN-MCKSLVEAPTSETLHAVLKRALAAGDVDGAK 224 (1088)
T ss_pred HHHHHHHHHHhhCCccccc---chHHHHH--HHhccC--CchHHHHHH-HHHHhhcCCChHHHHHHHHHHHhcCchhhHH
Confidence 4555555555443211110 1111111 111111 222233333 333333 499999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003913 353 KTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETG 432 (787)
Q Consensus 353 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g 432 (787)
.++.+|.+.|+..+..-|-.|+-+ .+...-+..+++-|.+.|+.|+..|+..-+-.+.++|....+. .|
T Consensus 225 ~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~--------e~ 293 (1088)
T KOG4318|consen 225 NLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGE--------EG 293 (1088)
T ss_pred HHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcc--------cc
Confidence 999999999998887777777666 8889999999999999999999999998888888866633332 22
Q ss_pred CCCCHH-----HHHHHHHHHHhcCCHHH--HHHHHHHHHh----cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 003913 433 MKPLMP-----SYINLTNMYLNLGMHDR--LHLAFSECLE----KCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ 501 (787)
Q Consensus 433 ~~p~~~-----t~~~li~~~~~~g~~~~--a~~~~~~m~~----~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 501 (787)
.+... .+..+.++......++. +.-+.....+ +......+|...+.. ..+|+-++.+++-..|..--
T Consensus 294 -sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt 371 (1088)
T KOG4318|consen 294 -SQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPT 371 (1088)
T ss_pred -cchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCc
Confidence 22222 23333333111122211 1111111111 333333455444433 33788888888877775421
Q ss_pred -CCC-CCHHHHHHHHHHHHcCCCHHHHHHHHH--HHHHc--CCccCHHHHHHH---------HHHHhhc-cccccccccc
Q 003913 502 -TIG-VNTRSCNIILSAYLSSGDFVKAEKIYD--LMCLK--KYEIESAWMEKL---------DYVLSLN-RKEVKKPVSL 565 (787)
Q Consensus 502 -~~~-p~~~t~~~li~~~~~~g~~~~A~~~~~--~m~~~--g~~~~p~~~~~l---------~~~~~l~-~~~~~~~~~~ 565 (787)
.+. -++..|..++.-|.+.-+......++. ..++. +....|...+-+ .+...+. .+........
T Consensus 372 ~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~ 451 (1088)
T KOG4318|consen 372 LRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPW 451 (1088)
T ss_pred cccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccc
Confidence 012 245567666666665433222222222 11111 111122221111 1111110 0111111111
Q ss_pred CCchHHHHHHHHHHhhhhhhccchhhcceeEE-EEEccCCcccHHHHHHHHHHchhhcCCCccccCCCCCcce---EEee
Q 003913 566 NLSSEQRENLIGLLLGGLCIESDEKRKRHMIR-FQFNENSRMHSVLRRYLYDQYHEWLHPSFKVSDGNDDIPY---KYST 641 (787)
Q Consensus 566 ~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~-~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~p~---~~~t 641 (787)
+...++--.+-+.++..|+..-+..+++...+ .+-. --+..|..|.+.+..-.+.++|.....+-...+.. .---
T Consensus 452 ~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~-lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~ 530 (1088)
T KOG4318|consen 452 PLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDL-LFAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPL 530 (1088)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHh
Confidence 22223334555666666666665555543322 0000 01245677777777777777776665332222110 0111
Q ss_pred eccchHHHHHHhhccCcccccccchhhcCC-h-hHHHHHhhcCCcccCCCcEEEEccCCHHHHHHHHHHHhhCCCce
Q 003913 642 ISHPYFCFYADKFWPKGRLVIPKLIHRWLT-P-RALAYWFMYGGHRTSVGDILLKLKVSSEGIALVFKTLKARSLDC 716 (787)
Q Consensus 642 ~~~~~~~~~~~g~~~~a~~~~~~mi~~gl~-P-~~lay~~m~~g~~~~~g~~~~~~~g~~~e~~~l~~~l~~~gl~~ 716 (787)
+.....-+.+.+....+.+++.+|.+.-.. | ..++.|-|.++ ....|..+...++.+.+..-|+.-
T Consensus 531 m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns---------~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 531 MTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNS---------GAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhh---------hhhccCHHHHHHHHHHHHHhhhhh
Confidence 222333455556666667777776654333 3 26788999999 667789999999999998877765
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.32 E-value=6.5e-10 Score=118.03 Aligned_cols=283 Identities=16% Similarity=0.099 Sum_probs=218.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCC--ccCHHHHHHHHHHhhhc
Q 003913 232 GCLDEACSIYNRMIQLGGYQPRPS-LHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGL--EIQKDIYSGLIWLHSYQ 308 (787)
Q Consensus 232 g~~~~A~~l~~~m~~~~g~~pd~~-t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~li~~~~~~ 308 (787)
-+..+|+.+|.+.... .+|.- ...-+-.+|... +++++|+.+|+.+.+... .-+..+|+..++ -..
T Consensus 333 y~~~~A~~~~~klp~h---~~nt~wvl~q~GrayFEl------~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LW--HLq 401 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH---HYNTGWVLSQLGRAYFEL------IEYDQAERIFSLVRRIEPYRVKGMEIYSTTLW--HLQ 401 (638)
T ss_pred HHHHHHHHHHHhhHHh---cCCchHHHHHHHHHHHHH------HHHHHHHHHHHHHHhhccccccchhHHHHHHH--HHH
Confidence 3568999999996653 45544 333344455554 699999999999977652 235678887762 211
Q ss_pred cCCCHHHHHHHH-HHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 003913 309 DNIDKERISLLK-KEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSL 387 (787)
Q Consensus 309 ~~g~~~~a~~l~-~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 387 (787)
+ +-++..+ +++.. --+-...+|.++.++|.-.++.+.|.+.|++..+.+.. ...+|+.+..-+.....+|.|.
T Consensus 402 ~----~v~Ls~Laq~Li~-~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~ 475 (638)
T KOG1126|consen 402 D----EVALSYLAQDLID-TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAM 475 (638)
T ss_pred h----hHHHHHHHHHHHh-hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHH
Confidence 1 1222222 22222 12335789999999999999999999999999987643 6788888888889999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 003913 388 EIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKC 467 (787)
Q Consensus 388 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~ 467 (787)
..|+..+....+ +-.+|--|...|.+.++++.|+-.|++.++-. +-+.+....+...+.+.|+.++|+++|++...-.
T Consensus 476 ~~fr~Al~~~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld 553 (638)
T KOG1126|consen 476 KSFRKALGVDPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD 553 (638)
T ss_pred HHHHhhhcCCch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC
Confidence 999988765111 23345556788999999999999999998743 3367788888999999999999999999998866
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 468 RPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 468 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
+.|+..---.+..+...+++++|+..|+++++. ++-+...|..+...|.+.|+.+.|+.-|--|..
T Consensus 554 ~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 554 PKNPLCKYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 777777777788888899999999999999996 555678888889999999999999999998885
No 46
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.27 E-value=1.7e-08 Score=98.04 Aligned_cols=309 Identities=12% Similarity=0.073 Sum_probs=222.3
Q ss_pred hHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcC-CccC
Q 003913 216 MTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSG-LEIQ 294 (787)
Q Consensus 216 ~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~-~~p~ 294 (787)
..|-.=++.+. ..+.++|..+|-+|.+ ..|..+--+.-+..+.+.. |.++.|.++++.+.++. +.-+
T Consensus 37 r~Yv~GlNfLL----s~Q~dKAvdlF~e~l~---~d~~t~e~~ltLGnLfRsR-----GEvDRAIRiHQ~L~~spdlT~~ 104 (389)
T COG2956 37 RDYVKGLNFLL----SNQPDKAVDLFLEMLQ---EDPETFEAHLTLGNLFRSR-----GEVDRAIRIHQTLLESPDLTFE 104 (389)
T ss_pred HHHHhHHHHHh----hcCcchHHHHHHHHHh---cCchhhHHHHHHHHHHHhc-----chHHHHHHHHHHHhcCCCCchH
Confidence 34555555555 5778888888888887 3566665555555555544 58888888888876643 2223
Q ss_pred HHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHH
Q 003913 295 KDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPT----PAF 370 (787)
Q Consensus 295 ~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~ 370 (787)
.-.....-++.-|...|-+++|+.+|..+.+.|.- -....--|+..|-+..+|++|..+-+++.+.+..+.. ..|
T Consensus 105 qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfy 183 (389)
T COG2956 105 QRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFY 183 (389)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHH
Confidence 33334444456678888899999999988875421 2345677899999999999999999999888755432 235
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003913 371 VYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNL 450 (787)
Q Consensus 371 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~ 450 (787)
.-|...+....+.+.|..++.+..+.+.+ .+..--.+.+.....|+++.|.+.++...+.+..--..+...|..+|.+.
T Consensus 184 CELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~l 262 (389)
T COG2956 184 CELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQL 262 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHh
Confidence 55666666778999999999998876332 33333456678899999999999999999876555567888999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHc---CCCHHHHH
Q 003913 451 GMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS---SGDFVKAE 527 (787)
Q Consensus 451 g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~---~g~~~~A~ 527 (787)
|+.++....+..+.+. .++...-..|-+.-....-.+.|...+.+-..+ +|+...+..+|..-.. .|...+.+
T Consensus 263 g~~~~~~~fL~~~~~~-~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r---~Pt~~gf~rl~~~~l~daeeg~~k~sL 338 (389)
T COG2956 263 GKPAEGLNFLRRAMET-NTGADAELMLADLIELQEGIDAAQAYLTRQLRR---KPTMRGFHRLMDYHLADAEEGRAKESL 338 (389)
T ss_pred CCHHHHHHHHHHHHHc-cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhh---CCcHHHHHHHHHhhhccccccchhhhH
Confidence 9999999999998862 334444455555555555677777777776665 4999999999986653 45577778
Q ss_pred HHHHHHHHcCCccCH
Q 003913 528 KIYDLMCLKKYEIES 542 (787)
Q Consensus 528 ~~~~~m~~~g~~~~p 542 (787)
..++.|....+...|
T Consensus 339 ~~lr~mvge~l~~~~ 353 (389)
T COG2956 339 DLLRDMVGEQLRRKP 353 (389)
T ss_pred HHHHHHHHHHHhhcC
Confidence 888888765444444
No 47
>PF13041 PPR_2: PPR repeat family
Probab=99.27 E-value=1.1e-11 Score=89.80 Aligned_cols=49 Identities=27% Similarity=0.481 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003913 365 IPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLC 413 (787)
Q Consensus 365 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 413 (787)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||++||++||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3444444444444444444444444444444444444444444444444
No 48
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=2.4e-09 Score=109.21 Aligned_cols=392 Identities=12% Similarity=0.067 Sum_probs=255.2
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003913 182 LATKLADYMGKERKFAKCRDIFDDIINQGRVPS-EMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSL 260 (787)
Q Consensus 182 ~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd-~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~l 260 (787)
.+-..-+-|.+.|++++|++.+.+.++ +.|| .+.|...-.+|. ..|+|+++.+.--+..+ +.|+-+
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~---~lgd~~~Vied~TkALE---l~P~Y~----- 183 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYE---SLGDWEKVIEDCTKALE---LNPDYV----- 183 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHH---HHhhHHHHHHHHHHHhh---cCcHHH-----
Confidence 344555667788999999999998876 8888 777888777787 68999998888877776 567643
Q ss_pred HHHHHcCCCC-CChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHH--------HHH-cC--C
Q 003913 261 FRALVSKPGG-LSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKE--------MQQ-AG--F 328 (787)
Q Consensus 261 l~~~~~~~~~-~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~--------m~~-~g--~ 328 (787)
.++.++... ..-|++.+|+.= .|...+. .++....-.--+.++++. -.+ .+ +
T Consensus 184 -KAl~RRA~A~E~lg~~~eal~D-------------~tv~ci~--~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~ 247 (606)
T KOG0547|consen 184 -KALLRRASAHEQLGKFDEALFD-------------VTVLCIL--EGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPV 247 (606)
T ss_pred -HHHHHHHHHHHhhccHHHHHHh-------------hhHHHHh--hhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCC
Confidence 122221100 000344444321 1111111 222222222222233321 111 11 3
Q ss_pred CCCHHHHHHHHHHHHh--------cC-----ChHHHHHHHHH------------HHhC------CCCCC---------HH
Q 003913 329 EEGKEVLLSVLRVCAK--------EG-----DVEDAEKTWLR------------LLES------DNGIP---------TP 368 (787)
Q Consensus 329 ~p~~~t~~~li~~~~~--------~g-----~~~~A~~~~~~------------m~~~------~~~~~---------~~ 368 (787)
-|+.....+....+-. .+ .+.++.+.+.. +.+. ....+ ..
T Consensus 248 lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~ 327 (606)
T KOG0547|consen 248 LPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAE 327 (606)
T ss_pred CCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHH
Confidence 3444333333333220 00 01112221111 1111 00111 11
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003913 369 AFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYL 448 (787)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~ 448 (787)
+...-...+.-+|+.-.|..-|+..++....++ ..|--+...|....+.++....|.+..+.. +-|..+|..-.+++.
T Consensus 328 al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~f 405 (606)
T KOG0547|consen 328 ALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRF 405 (606)
T ss_pred HHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHH
Confidence 111122334457899999999999987644332 237777888999999999999999998854 446788988899999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 003913 449 NLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEK 528 (787)
Q Consensus 449 ~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~ 528 (787)
-.+++++|..-|++.++-.+-++..|--+.-+.-|.+++++++..|++.+++ +|.-+..|+.....+...++++.|.+
T Consensus 406 lL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k 483 (606)
T KOG0547|consen 406 LLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVK 483 (606)
T ss_pred HHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHH
Confidence 9999999999999998866778888988888889999999999999999998 77778999999999999999999999
Q ss_pred HHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhhhhccchhhcceeEE--EEEccCCcc
Q 003913 529 IYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRM 606 (787)
Q Consensus 529 ~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--~~~~p~~~~ 606 (787)
.|+..++ +.|.. ++. .+... ..+-.+++-.-+. +++..|..++. ++++|....
T Consensus 484 ~YD~ai~----LE~~~--~~~--------------~v~~~----plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~ 538 (606)
T KOG0547|consen 484 QYDKAIE----LEPRE--HLI--------------IVNAA----PLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQ 538 (606)
T ss_pred HHHHHHh----hcccc--ccc--------------cccch----hhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHH
Confidence 9999886 44431 000 00000 1222233322233 78888888887 899999999
Q ss_pred cHHHHHHHHHHchhhcCCCccccCC
Q 003913 607 HSVLRRYLYDQYHEWLHPSFKVSDG 631 (787)
Q Consensus 607 ~~~~l~~~y~~~g~~~~A~~~~~~~ 631 (787)
+|..|+.+-.+.|++++|++.|++.
T Consensus 539 A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 539 AYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999999999999999888543
No 49
>PF13041 PPR_2: PPR repeat family
Probab=99.26 E-value=1.5e-11 Score=89.10 Aligned_cols=50 Identities=32% Similarity=0.402 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003913 400 ASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLN 449 (787)
Q Consensus 400 p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~ 449 (787)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+.||++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999875
No 50
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.24 E-value=3.5e-08 Score=107.25 Aligned_cols=218 Identities=14% Similarity=0.069 Sum_probs=118.0
Q ss_pred hHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---HhcCChHHH
Q 003913 275 YLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVC---AKEGDVEDA 351 (787)
Q Consensus 275 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~---~~~g~~~~A 351 (787)
+++.|...++.+.+..+. +..+...+. ..+...|++++|.+++..+.+.++.+.......-..++ ...+..+.+
T Consensus 168 ~~~~Al~~l~~l~~~~P~-~~~~l~ll~--~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~ 244 (409)
T TIGR00540 168 ELHAARHGVDKLLEMAPR-HKEVLKLAE--EAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEG 244 (409)
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHH--HHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 555555555555544422 222222222 44555555555555555555554332221111111111 112222222
Q ss_pred HHHHHHHHhCCCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHhcCChHHHHHHH
Q 003913 352 EKTWLRLLESDNG---IPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPA---YHKIIELLCKAEETELTESLM 425 (787)
Q Consensus 352 ~~~~~~m~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~li~~~~~~g~~~~A~~l~ 425 (787)
.+.+..+.+..+. .+...+..+...+...|+.++|.+++++..++. ||... .....-.....++.+.+.+.+
T Consensus 245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~ 322 (409)
T TIGR00540 245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLI 322 (409)
T ss_pred HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHH
Confidence 2333333333221 256677777777778888888888887777652 33321 111222223346667777777
Q ss_pred HHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 003913 426 KEFVETGMKPLM--PSYINLTNMYLNLGMHDRLHLAFSECLE-KCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMH 498 (787)
Q Consensus 426 ~~m~~~g~~p~~--~t~~~li~~~~~~g~~~~a~~~~~~m~~-~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 498 (787)
+...+.. +-|. ....++...|.+.|++++|.+.|+.... ...|+...+..+...+.+.|+.++|.+++++..
T Consensus 323 e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 323 EKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7766532 2233 5566777788888888888888884333 346777777788888888888888888887753
No 51
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.23 E-value=6.4e-09 Score=103.91 Aligned_cols=200 Identities=16% Similarity=0.120 Sum_probs=164.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003913 332 KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIEL 411 (787)
Q Consensus 332 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 411 (787)
...+..+...+...|++++|.+.+++..+.... +...+..+...|...|++++|.+.|++..+... .+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence 456777788888899999999999988876533 567778888899999999999999998887643 356677788888
Q ss_pred HHhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHH
Q 003913 412 LCKAEETELTESLMKEFVETGMK-PLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKA 490 (787)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A 490 (787)
+...|++++|...+++..+.... .....+..+..++...|++++|...+.+..+..+.+...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998874322 23556777888899999999999999998876566778889999999999999999
Q ss_pred HHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 491 EEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 491 ~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
...+++..... +.+...+..+...+...|+.++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTY--NQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999988763 55677788888889999999999999888764
No 52
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1e-08 Score=106.80 Aligned_cols=447 Identities=11% Similarity=0.023 Sum_probs=291.4
Q ss_pred cCCcchHHHHHHHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHH----HHHHC--------
Q 003913 142 LRQEDGTYLAVHCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFD----DIINQ-------- 209 (787)
Q Consensus 142 ~~p~~~t~~~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~----~m~~~-------- 209 (787)
..|++.-+.+..+.-.|.+++|..+...-.- ...|..........+.+..++++|..++. .+...
T Consensus 47 ~dp~d~~~~aq~l~~~~~y~ra~~lit~~~l---e~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~ 123 (611)
T KOG1173|consen 47 NDPADIYWLAQVLYLGRQYERAAHLITTYKL---EKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAA 123 (611)
T ss_pred CChHHHHHHHHHHHhhhHHHHHHHHHHHhhh---hhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhh
Confidence 5666666666655556677777666554322 23366777777788888899999998887 22210
Q ss_pred -CCCCCHhH---HHHH-HHHHhcC----CcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHH
Q 003913 210 -GRVPSEMT---FHIL-IVAYLSA----PVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAE 280 (787)
Q Consensus 210 -g~~pd~~t---y~~l-i~~~~~~----~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~ 280 (787)
-+.+|..- -..+ .+-|... ....+.++|...|.+.. ..|...|-.+...... .+-.+.
T Consensus 124 ~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al-----~~D~~c~Ea~~~lvs~--------~mlt~~ 190 (611)
T KOG1173|consen 124 NTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEAL-----LADAKCFEAFEKLVSA--------HMLTAQ 190 (611)
T ss_pred ceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHH-----hcchhhHHHHHHHHHH--------Hhcchh
Confidence 01111111 0111 1111100 02234455555555443 3444444444333222 333343
Q ss_pred HHHHHHHHcCCc----cCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003913 281 FIFHNLLTSGLE----IQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWL 356 (787)
Q Consensus 281 ~~~~~m~~~~~~----p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~ 356 (787)
+.|+.+...+.. -+....-.+..+.. ++..+. .....-.+-.-.|..-+......-..-|-..+++.+..++.+
T Consensus 191 Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~-~k~~n~-~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~ 268 (611)
T KOG1173|consen 191 EEFELLESLDLAMLTKEDVERLEILYELKL-CKNRNE-ESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITE 268 (611)
T ss_pred HHHHHHhcccHHhhhhhHHHHHHHHHHhhh-hhhccc-cccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhH
Confidence 333333322211 00111111110000 000000 000000001112334455566666677778999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003913 357 RLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPL 436 (787)
Q Consensus 357 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 436 (787)
.+.+..+ +....+..-|.++...|+-.+-..+=.+|.+. .+-..++|-++.--|...|+..+|.+.|.+... +.|.
T Consensus 269 ~lle~dp-fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~--lD~~ 344 (611)
T KOG1173|consen 269 ELLEKDP-FHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATT--LDPT 344 (611)
T ss_pred HHHhhCC-CCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhh--cCcc
Confidence 9998764 45666666788999999999988888888876 444678999999999999999999999998775 3333
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHH
Q 003913 437 -MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILS 515 (787)
Q Consensus 437 -~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~ 515 (787)
...|..+.+.|+-.|..|.|...+....+-.+-...-+--+.--|.+.++++-|.++|.+.... .|.|+...+-+.-
T Consensus 345 fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai--~P~Dplv~~Elgv 422 (611)
T KOG1173|consen 345 FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI--APSDPLVLHELGV 422 (611)
T ss_pred ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc--CCCcchhhhhhhh
Confidence 5689999999999999999999998887733333333344556688899999999999999987 4678888888888
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhhhhccchhhccee
Q 003913 516 AYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHM 595 (787)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 595 (787)
.....+.+.+|..+|+..++ +-++. .. ..... +.+++.|..+|++.+..++|+..
T Consensus 423 vay~~~~y~~A~~~f~~~l~----~ik~~----------~~--------e~~~w---~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 423 VAYTYEEYPEALKYFQKALE----VIKSV----------LN--------EKIFW---EPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred eeehHhhhHHHHHHHHHHHH----Hhhhc----------cc--------cccch---hHHHHhHHHHHHHHhhHHHHHHH
Confidence 88889999999999998874 22211 00 00011 56789999999999999999998
Q ss_pred EE--EEEccCCcccHHHHHHHHHHchhhcCCCccccCCCCCcce
Q 003913 596 IR--FQFNENSRMHSVLRRYLYDQYHEWLHPSFKVSDGNDDIPY 637 (787)
Q Consensus 596 ~~--~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~p~ 637 (787)
++ +.+.|.++.+|..++-+|...|+++.|+..+.+++.+.|+
T Consensus 478 ~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~ 521 (611)
T KOG1173|consen 478 YQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPD 521 (611)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCc
Confidence 88 8889999999999999999999999999999888888887
No 53
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.21 E-value=5.3e-08 Score=97.74 Aligned_cols=251 Identities=16% Similarity=0.129 Sum_probs=187.9
Q ss_pred hhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003913 274 YYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEK 353 (787)
Q Consensus 274 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ 353 (787)
|++.+|++...+-.+.+-. .+.+.++-+.+....|+.+.+-..+.+..+.--.++..++-+........|+...|..
T Consensus 98 G~~~qAEkl~~rnae~~e~---p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQ---PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred CcHHHHHHHHHHhhhcCcc---hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 7999999999998877754 4667777778999999999999999999886556677788888888999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHH----------------
Q 003913 354 TWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASV-------PAYHKIIE---------------- 410 (787)
Q Consensus 354 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~li~---------------- 410 (787)
-.+++.+.++. +..+......+|.+.|++.+...++..|.+.|.--|. .+|+.++.
T Consensus 175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 99999998876 5677888999999999999999999999887764443 23444443
Q ss_pred ------------------HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q 003913 411 ------------------LLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRT 472 (787)
Q Consensus 411 ------------------~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~ 472 (787)
-+.+.|+.++|.++..+..+.+..|+ -...-.+.+.++.+.-++..++-.+..+-++.
T Consensus 254 ~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 254 NQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred hccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 34445555555555555555444443 11112233444444444444444443455667
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 473 IYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
.+.+|...|.+.+.+.+|.+.|+...+. .|+..+|+-+.++|.+.|+..+|.+++++.+.
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~---~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKL---RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 8888888888999999999999987775 48889999999999999999999888887763
No 54
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=1.5e-07 Score=96.37 Aligned_cols=232 Identities=9% Similarity=0.021 Sum_probs=178.7
Q ss_pred HHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003913 297 IYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEA 376 (787)
Q Consensus 297 ~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 376 (787)
..+.++.+..+.-.|+.-.|..-|+...+..-.++. .|--+..+|....+-++..+.|.+..+.++. +..+|..-..+
T Consensus 326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm 403 (606)
T KOG0547|consen 326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQM 403 (606)
T ss_pred HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHH
Confidence 334445555566677888888888888775333322 2777778899999999999999999988865 67788888888
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003913 377 YAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRL 456 (787)
Q Consensus 377 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 456 (787)
+.-.+++++|..=|++.+..... ++..|--+--+..+.+.++++...|++.++. ++-.+..|+.....+...++++.|
T Consensus 404 ~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A 481 (606)
T KOG0547|consen 404 RFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKA 481 (606)
T ss_pred HHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHH
Confidence 88889999999999998875322 5566766777777889999999999999875 455678999999999999999999
Q ss_pred HHHHHHHHhcC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 003913 457 HLAFSECLEKC--------RPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEK 528 (787)
Q Consensus 457 ~~~~~~m~~~~--------~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~ 528 (787)
.+.|+..++.- .+.+.+.-.++..- -.+++..|++++++..+.+ +-....|.+|...-.+.|+.++|++
T Consensus 482 ~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~D--pkce~A~~tlaq~~lQ~~~i~eAie 558 (606)
T KOG0547|consen 482 VKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELD--PKCEQAYETLAQFELQRGKIDEAIE 558 (606)
T ss_pred HHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccC--chHHHHHHHHHHHHHHHhhHHHHHH
Confidence 99999988621 12222223333222 2489999999999999875 4467899999999999999999999
Q ss_pred HHHHHHH
Q 003913 529 IYDLMCL 535 (787)
Q Consensus 529 ~~~~m~~ 535 (787)
+|++...
T Consensus 559 lFEksa~ 565 (606)
T KOG0547|consen 559 LFEKSAQ 565 (606)
T ss_pred HHHHHHH
Confidence 9998774
No 55
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=6e-08 Score=97.13 Aligned_cols=399 Identities=11% Similarity=0.047 Sum_probs=266.1
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003913 183 ATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFR 262 (787)
Q Consensus 183 ~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~ 262 (787)
--..+..|-..++-+.|.....+.+..-. ..--|.|+.-+-. ..++..++.--+.+...+ ...- -..|.
T Consensus 100 ~r~~aecy~~~~n~~~Ai~~l~~~p~t~r---~p~inlMla~l~~--~g~r~~~~vl~ykevvre--cp~a----L~~i~ 168 (564)
T KOG1174|consen 100 RRRAAECYRQIGNTDMAIETLLQVPPTLR---SPRINLMLARLQH--HGSRHKEAVLAYKEVIRE--CPMA----LQVIE 168 (564)
T ss_pred HHHHHHHHHHHccchHHHHHHhcCCcccc---chhHHHHHHHHHh--ccccccHHHHhhhHHHHh--cchH----HHHHH
Confidence 34556666677777788777776655422 2223333333332 233333444444444432 1111 11222
Q ss_pred HHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHH
Q 003913 263 ALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAG-FEEGKEVLLSVLRV 341 (787)
Q Consensus 263 ~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g-~~p~~~t~~~li~~ 341 (787)
++.+. -+..+..-=..|-...+.|..++...-+.+.+.+-.++...+..++--+.... ++-|+.....+...
T Consensus 169 ~ll~l-------~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~ 241 (564)
T KOG1174|consen 169 ALLEL-------GVNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKC 241 (564)
T ss_pred HHHHH-------hhcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhh
Confidence 22221 12223333334445556667777777777777777787777777766555544 44467778899999
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 003913 342 CAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELT 421 (787)
Q Consensus 342 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 421 (787)
+...|+.++|...|++....++. ++.....-.-.+.+.|+++.-..+...+.... .-+...|-.-...+....+++.|
T Consensus 242 ~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rA 319 (564)
T KOG1174|consen 242 LYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERA 319 (564)
T ss_pred hhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHH
Confidence 99999999999999988876431 11111122334567788888888888876541 12444565556666777889999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 003913 422 ESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ 501 (787)
Q Consensus 422 ~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 501 (787)
+.+-++.++.. +-+...|..-...+...+++++|.-.|+....--+-+..+|..|+..|...|++.+|.-+-+...+.
T Consensus 320 L~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~- 397 (564)
T KOG1174|consen 320 LNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL- 397 (564)
T ss_pred HHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-
Confidence 99999888754 3345677777778889999999999999987755678899999999999999999999888877665
Q ss_pred CCCCCHHHHHHHH-HHHHc-CCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHH
Q 003913 502 TIGVNTRSCNIIL-SAYLS-SGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLL 579 (787)
Q Consensus 502 ~~~p~~~t~~~li-~~~~~-~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~l 579 (787)
++.+..+.+.+. ..+.- ..--++|.+++++-+ .+.|+. ......+
T Consensus 398 -~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L----~~~P~Y----------------------------~~AV~~~ 444 (564)
T KOG1174|consen 398 -FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL----KINPIY----------------------------TPAVNLI 444 (564)
T ss_pred -hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh----ccCCcc----------------------------HHHHHHH
Confidence 455666666553 22322 222467777777544 477764 4555667
Q ss_pred hhhhhhccchhhcceeEE--EEEccCCcccHHHHHHHHHHchhhcCCCccccCCCCCcce
Q 003913 580 LGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSFKVSDGNDDIPY 637 (787)
Q Consensus 580 l~~~~~~~~~~~a~~~~~--~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~p~ 637 (787)
...|...|..+.+..+.+ +...| |...++.|++++.....+.+|...+..++..+|.
T Consensus 445 AEL~~~Eg~~~D~i~LLe~~L~~~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 445 AELCQVEGPTKDIIKLLEKHLIIFP-DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHHHhhCccchHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 777888888888888877 44444 5668899999999999999999998888888887
No 56
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.13 E-value=1.3e-09 Score=105.54 Aligned_cols=234 Identities=8% Similarity=-0.043 Sum_probs=201.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003913 371 VYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNL 450 (787)
Q Consensus 371 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~ 450 (787)
+-|..+|.+.|.+.+|.+.|+.-.+. .|-+.||--|-++|.+..+++.|+.++.+-++. .+-|+.....+.+.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56899999999999999999988776 566778888999999999999999999998874 233444456678889999
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 003913 451 GMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIY 530 (787)
Q Consensus 451 g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~ 530 (787)
++.++|.++|+...+..+.|+....++..+|.-.++.+-|+..+.++.+.| + -+...|+.+.-+|.-.+++|-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-A-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhc-C-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 999999999999999778899999999999999999999999999999999 3 57889999999999999999999999
Q ss_pred HHHHHcCCccCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhhhhccchhhcceeEE--EEEccCCcccH
Q 003913 531 DLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHS 608 (787)
Q Consensus 531 ~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--~~~~p~~~~~~ 608 (787)
++.+..--.+. +-.-+|-.|.......|++..|.+.++ +..+|++..++
T Consensus 382 ~RAlstat~~~-----------------------------~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~eal 432 (478)
T KOG1129|consen 382 QRALSTATQPG-----------------------------QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEAL 432 (478)
T ss_pred HHHHhhccCcc-----------------------------hhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHH
Confidence 99885322122 226789999999999999999999998 67789999999
Q ss_pred HHHHHHHHHchhhcCCCccccCCCCCcceE
Q 003913 609 VLRRYLYDQYHEWLHPSFKVSDGNDDIPYK 638 (787)
Q Consensus 609 ~~l~~~y~~~g~~~~A~~~~~~~~~~~p~~ 638 (787)
+.|+-+-.+.|++++|...+..+..+.|+-
T Consensus 433 nNLavL~~r~G~i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 433 NNLAVLAARSGDILGARSLLNAAKSVMPDM 462 (478)
T ss_pred HhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence 999999999999999999998888888863
No 57
>PRK12370 invasion protein regulator; Provisional
Probab=99.11 E-value=6.6e-08 Score=109.30 Aligned_cols=253 Identities=9% Similarity=-0.052 Sum_probs=170.5
Q ss_pred hhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhh-------hccCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhc
Q 003913 274 YYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHS-------YQDNIDKERISLLKKEMQQAGFEE-GKEVLLSVLRVCAKE 345 (787)
Q Consensus 274 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~-------~~~~g~~~~a~~l~~~m~~~g~~p-~~~t~~~li~~~~~~ 345 (787)
+.+++|...|++.++.... +...+..+...+. ....++.++|...+++..+. .| +...+..+..++...
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l--dP~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL--DHNNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHc
Confidence 5788999999998876643 2333333332111 12345578888888888774 45 456677777778888
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003913 346 GDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLM 425 (787)
Q Consensus 346 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~ 425 (787)
|++++|...+++..+.++. +...+..+...|...|++++|...+++..+.... +...+..++..+...|++++|...+
T Consensus 352 g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred cCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHH
Confidence 8999999999888887743 5667778888888889999999999888876322 2223334455566778888898888
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC
Q 003913 426 KEFVETGMKP-LMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIG 504 (787)
Q Consensus 426 ~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 504 (787)
+++.+.. .| +...+..+..+|...|+.++|...+..+....+.+....+.+...|++.| ++|...++.+.+...-.
T Consensus 430 ~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 430 DELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 8877653 34 35557777788888899999988888876554445566677777777777 47777777766543222
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 003913 505 VNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKK 537 (787)
Q Consensus 505 p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g 537 (787)
|...-+..+ .|.-.|+-+.+..+ +++.+.+
T Consensus 507 ~~~~~~~~~--~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 507 DNNPGLLPL--VLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hcCchHHHH--HHHHHhhhHHHHHH-HHhhccc
Confidence 333333333 34556666666665 7777644
No 58
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.09 E-value=6.2e-06 Score=84.41 Aligned_cols=202 Identities=14% Similarity=0.190 Sum_probs=131.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHH--------HHHHcCChHHHHHHHHHHHHcCCCCC
Q 003913 331 GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPT-PAFVYKME--------AYAKIGEFMKSLEIFREMQERLGSAS 401 (787)
Q Consensus 331 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~--------~~~~~g~~~~A~~~~~~m~~~g~~p~ 401 (787)
|-.+|-..++.--..|+.+...++|++.+..-+.... ..|.--|- .=....+.+.+.++|+..++. ++-.
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHk 399 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHK 399 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcc
Confidence 5556666666666677777777777777764322111 11111111 112346677777777777663 3334
Q ss_pred HHHHHHHHHHH----HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 003913 402 VPAYHKIIELL----CKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIY 477 (787)
Q Consensus 402 ~~t~~~li~~~----~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~l 477 (787)
..||.-+=-.| .++.++..|.+++...+ |..|-..+|-..|..=.+.++++.+..+|++.++-.+-|..+|.-.
T Consensus 400 kFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~ky 477 (677)
T KOG1915|consen 400 KFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKY 477 (677)
T ss_pred cchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHH
Confidence 44554443333 35567777777777766 5677777787777777788888888888888777556677777777
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 478 LESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 478 i~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
...=...|+.+.|..+|+-.+++..+.--...|.+.|+--...|.++.|..+|+++++
T Consensus 478 aElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 478 AELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence 7777777888888888887776643333456777777777778888888888888776
No 59
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.08 E-value=8e-08 Score=95.91 Aligned_cols=194 Identities=11% Similarity=0.096 Sum_probs=163.7
Q ss_pred HhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh
Q 003913 304 LHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEF 383 (787)
Q Consensus 304 ~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 383 (787)
+..+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+...|...|++
T Consensus 38 a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~g~~ 115 (234)
T TIGR02521 38 ALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTFLCQQGKY 115 (234)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcccH
Confidence 377788999999999999988752 234667888899999999999999999999987654 567788899999999999
Q ss_pred HHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003913 384 MKSLEIFREMQERLGS-ASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSE 462 (787)
Q Consensus 384 ~~A~~~~~~m~~~g~~-p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~ 462 (787)
++|.+.|++....... .....+..+...+...|++++|...+.+..+.. +.+...+..+...+...|++++|...+++
T Consensus 116 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 194 (234)
T TIGR02521 116 EQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLER 194 (234)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999875322 234567778889999999999999999998754 33567888999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 003913 463 CLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 463 m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (787)
..+..+.+...+..++..+...|+.++|..+.+.+...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 195 YQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 98755667788888899999999999999998887654
No 60
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.08 E-value=3.9e-08 Score=98.72 Aligned_cols=283 Identities=12% Similarity=0.024 Sum_probs=224.1
Q ss_pred ccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 003913 308 QDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSL 387 (787)
Q Consensus 308 ~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 387 (787)
...|++.+|+++..+-.+.|-.| ...|..-..+--+.|+.+.+-+++.+.-+.-..++..++-+........|+++.|.
T Consensus 95 l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 95 LFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred HhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHH
Confidence 45789999999999877765443 34566667777889999999999999988855667888888899999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHH
Q 003913 388 EIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLM-------PSYINLTNMYLNLGMHDRLHLAF 460 (787)
Q Consensus 388 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~li~~~~~~g~~~~a~~~~ 460 (787)
.-.+++.+.+.. +.........+|.+.|++.....++..|.+.|+--+. .+|..+++=....+..+.-...|
T Consensus 174 ~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 174 ENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 999999887554 5677788899999999999999999999998876653 46788888777777777777788
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCcc
Q 003913 461 SECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEI 540 (787)
Q Consensus 461 ~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 540 (787)
+...+..+.++..-.+++.-+.++|+.++|.++.++..+++ ..|+ -...-.+.+-++.+.=++..+.-.+ ..+-
T Consensus 253 ~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~-~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~-~h~~ 326 (400)
T COG3071 253 KNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQ-WDPR----LCRLIPRLRPGDPEPLIKAAEKWLK-QHPE 326 (400)
T ss_pred HhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhc-cChh----HHHHHhhcCCCCchHHHHHHHHHHH-hCCC
Confidence 88877666777788888999999999999999999988887 4444 2233455677777766666666554 1112
Q ss_pred CHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhhhhccchhhcceeEE--EEEccCCcccHHHHHHHHHHc
Q 003913 541 ESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQY 618 (787)
Q Consensus 541 ~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--~~~~p~~~~~~~~l~~~y~~~ 618 (787)
+ +..+.+|...|.+++.+.+|...++ +...| +...+..+++.|.+.
T Consensus 327 ~-------------------------------p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~ 374 (400)
T COG3071 327 D-------------------------------PLLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQL 374 (400)
T ss_pred C-------------------------------hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHc
Confidence 2 3678899999999999999999988 55555 677899999999999
Q ss_pred hhhcCCCccccC
Q 003913 619 HEWLHPSFKVSD 630 (787)
Q Consensus 619 g~~~~A~~~~~~ 630 (787)
|+..+|.....+
T Consensus 375 g~~~~A~~~r~e 386 (400)
T COG3071 375 GEPEEAEQVRRE 386 (400)
T ss_pred CChHHHHHHHHH
Confidence 998887666543
No 61
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.07 E-value=1.8e-07 Score=100.81 Aligned_cols=246 Identities=16% Similarity=0.146 Sum_probs=181.6
Q ss_pred cCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHc-----C-CCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003913 289 SGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQA-----G-FEEGKEV-LLSVLRVCAKEGDVEDAEKTWLRLLES 361 (787)
Q Consensus 289 ~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~-----g-~~p~~~t-~~~li~~~~~~g~~~~A~~~~~~m~~~ 361 (787)
.+-.+.............|...|+++.|..+++...+. | ..|...+ .+.+...|...+++++|..+|+++...
T Consensus 191 ~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i 270 (508)
T KOG1840|consen 191 LGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI 270 (508)
T ss_pred cccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 33333344444444568899999999999999877653 2 2344443 345777889999999999999998763
Q ss_pred -----CCC-C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHH---c--CC-CCCHH-HHHHHHHHHHhcCChHHHHHHHHH
Q 003913 362 -----DNG-I-PTPAFVYKMEAYAKIGEFMKSLEIFREMQE---R--LG-SASVP-AYHKIIELLCKAEETELTESLMKE 427 (787)
Q Consensus 362 -----~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~--g~-~p~~~-t~~~li~~~~~~g~~~~A~~l~~~ 427 (787)
|.. | -..+++.|..+|++.|++++|...+++..+ + |. .|.+. .++.++..|+..+++++|..+++.
T Consensus 271 ~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~ 350 (508)
T KOG1840|consen 271 REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQK 350 (508)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 221 1 134567778899999999999988887642 1 22 22232 367788889999999999999988
Q ss_pred HHHc---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCC--C-CHHHHHHHHHHHHhcCCHHHHHH
Q 003913 428 FVET---GMKPL----MPSYINLTNMYLNLGMHDRLHLAFSECLE-----KCR--P-NRTIYGIYLESLKNAGNIEKAEE 492 (787)
Q Consensus 428 m~~~---g~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~--p-~~~~~~~li~~~~~~g~~~~A~~ 492 (787)
..+. -..++ ..+++.|...|.+.|++++|.++|++++. +.. + .-..++.|...|.+.+++++|.+
T Consensus 351 al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~ 430 (508)
T KOG1840|consen 351 ALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQ 430 (508)
T ss_pred HHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHH
Confidence 7652 12222 46899999999999999999999999875 111 2 24567888999999999999999
Q ss_pred HHHHhh----hCCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003913 493 IFNHMH----SDQTIGVN-TRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (787)
Q Consensus 493 l~~~m~----~~~~~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (787)
+|.+.. .-|.-.|+ ..+|..|...|.+.|++++|+++.+...
T Consensus 431 l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 431 LFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 998743 33433344 4689999999999999999999998877
No 62
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.06 E-value=1.2e-08 Score=111.30 Aligned_cols=255 Identities=15% Similarity=0.099 Sum_probs=171.8
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHH
Q 003913 239 SIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISL 318 (787)
Q Consensus 239 ~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~ 318 (787)
.++-.|... |+.|+.+||..+|.-||.. |+.+.|- +|.-|....+..+..+++.++ .+....++.+.+.
T Consensus 11 nfla~~e~~-gi~PnRvtyqsLiarYc~~------gdieaat-if~fm~~ksLpv~e~vf~~lv--~sh~~And~Enpk- 79 (1088)
T KOG4318|consen 11 NFLALHEIS-GILPNRVTYQSLIARYCTK------GDIEAAT-IFPFMEIKSLPVREGVFRGLV--ASHKEANDAENPK- 79 (1088)
T ss_pred hHHHHHHHh-cCCCchhhHHHHHHHHccc------CCCcccc-chhhhhcccccccchhHHHHH--hcccccccccCCC-
Confidence 345666665 8999999999999999987 6888888 999999999888999999999 6767777666553
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-------CCCCCCHHH--------------HHHHHHHH
Q 003913 319 LKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLE-------SDNGIPTPA--------------FVYKMEAY 377 (787)
Q Consensus 319 l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~-------~~~~~~~~~--------------~~~li~~~ 377 (787)
.|...||..|+.+|...||+..-..+=+.|.. .|+.....- -...+...
T Consensus 80 ----------ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illl 149 (1088)
T KOG4318|consen 80 ----------EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLL 149 (1088)
T ss_pred ----------CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHH
Confidence 78899999999999999997652222111221 222111100 01123333
Q ss_pred HHcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003913 378 AKIGEFMKSLEIFREMQER-LGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRL 456 (787)
Q Consensus 378 ~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 456 (787)
.-.|.++.+++++..|... ...|-.+ +++-+.... .-..++........-.|+..+|..++++-...|+++.|
T Consensus 150 v~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~A 223 (1088)
T KOG4318|consen 150 VLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGA 223 (1088)
T ss_pred HHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhH
Confidence 4444555555555444321 1111111 233332222 22233333333211158888999999998899999999
Q ss_pred HHHHHHHHh-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHH
Q 003913 457 HLAFSECLE-KCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFV 524 (787)
Q Consensus 457 ~~~~~~m~~-~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~ 524 (787)
..++.+|.+ |.+.+..-|-.|+-+ .|...-++.++.-|.+.| +.|+..|+...+-.+..+|...
T Consensus 224 k~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~g-v~p~seT~adyvip~l~N~~t~ 288 (1088)
T KOG4318|consen 224 KNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKG-VQPGSETQADYVIPQLSNGQTK 288 (1088)
T ss_pred HHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhc-CCCCcchhHHHHHhhhcchhhh
Confidence 999999988 888888877777766 788888888888888888 8899999888888888766633
No 63
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.06 E-value=5.6e-06 Score=84.72 Aligned_cols=412 Identities=11% Similarity=0.127 Sum_probs=203.1
Q ss_pred cCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHHH
Q 003913 157 IRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDE 236 (787)
Q Consensus 157 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~~ 236 (787)
.+++..|..+|+...... ..+...|-.-+.+=.|+..+..|..+++.....=...|..=|--+. .=- ..|++.-
T Consensus 86 q~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~y-mEE---~LgNi~g 159 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIY-MEE---MLGNIAG 159 (677)
T ss_pred HHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHH-HHH---HhcccHH
Confidence 345566666666666654 3355566666666666666666666666655431111222222111 111 2466666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHH
Q 003913 237 ACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERI 316 (787)
Q Consensus 237 A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a 316 (787)
|.++|..=.. ..|+.-.|++.|+-=.+- ..++.|..+++..+-.. | .+-+++-.+..--+.|....|
T Consensus 160 aRqiferW~~---w~P~eqaW~sfI~fElRy------keieraR~IYerfV~~H--P--~v~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 160 ARQIFERWME---WEPDEQAWLSFIKFELRY------KEIERARSIYERFVLVH--P--KVSNWIKYARFEEKHGNVALA 226 (677)
T ss_pred HHHHHHHHHc---CCCcHHHHHHHHHHHHHh------hHHHHHHHHHHHHheec--c--cHHHHHHHHHHHHhcCcHHHH
Confidence 6666666543 466666666666654443 35666666666665322 2 233333333555556666666
Q ss_pred HHHHHHHHHc-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCC---hHHHHH--
Q 003913 317 SLLKKEMQQA-GF-EEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIP-TPAFVYKMEAYAKIGE---FMKSLE-- 388 (787)
Q Consensus 317 ~~l~~~m~~~-g~-~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~---~~~A~~-- 388 (787)
..+|....+. |- ..+...+++....=..+..++.|.-+|+..+..-+.-. ...|......=-+-|+ +++++-
T Consensus 227 R~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 227 RSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 6666555432 10 00122233333333345556666666666555432211 1222222222222233 222221
Q ss_pred ---HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHH---HhcCCHHH
Q 003913 389 ---IFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLM-------PSYINLTNMY---LNLGMHDR 455 (787)
Q Consensus 389 ---~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~li~~~---~~~g~~~~ 455 (787)
-|+.+...+ +-|-.+|--.+..--..|+.+...++|++.+.. ++|-. ++|.-+=-++ ....+++.
T Consensus 307 Rk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~er 384 (677)
T KOG1915|consen 307 RKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVER 384 (677)
T ss_pred hhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 123333332 235555555555555666666666666666653 34421 1222211111 13456666
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 003913 456 LHLAFSECLEKCRPNRTIYGIYLESLK----NAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYD 531 (787)
Q Consensus 456 a~~~~~~m~~~~~p~~~~~~~li~~~~----~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~ 531 (787)
+.++|+.+++-++-...||.-+--+|+ ++.++..|.+++...+.. -|-..+|...|..-.+.+.++...++|+
T Consensus 385 tr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~---cPK~KlFk~YIelElqL~efDRcRkLYE 461 (677)
T KOG1915|consen 385 TRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK---CPKDKLFKGYIELELQLREFDRCRKLYE 461 (677)
T ss_pred HHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc---CCchhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 666666666655555555555544444 355666666666666544 2566666666666666666666666666
Q ss_pred HHHHcCCccCHHHHHH---HHHHH-hhcc-----cccccccccCCchHHHHHHHHHHhhhhhhccchhhcceeEE
Q 003913 532 LMCLKKYEIESAWMEK---LDYVL-SLNR-----KEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR 597 (787)
Q Consensus 532 ~m~~~g~~~~p~~~~~---l~~~~-~l~~-----~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 597 (787)
+.++ -+|..... +...- .|+. ......++ +...+....+|.+.+.--...|.++.++.+++
T Consensus 462 kfle----~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~-qp~ldmpellwkaYIdFEi~~~E~ekaR~LYe 531 (677)
T KOG1915|consen 462 KFLE----FSPENCYAWSKYAELETSLGDTDRARAIFELAIS-QPALDMPELLWKAYIDFEIEEGEFEKARALYE 531 (677)
T ss_pred HHHh----cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhc-CcccccHHHHHHHhhhhhhhcchHHHHHHHHH
Confidence 6665 34432111 11100 0000 00000000 00011126777777777777777777777776
No 64
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.06 E-value=6.7e-07 Score=87.24 Aligned_cols=204 Identities=15% Similarity=0.150 Sum_probs=98.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003913 335 LLSVLRVCAKEGDVEDAEKTWLRLLESD-NGIP--TPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIEL 411 (787)
Q Consensus 335 ~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 411 (787)
--+|-+.|.+.|.+|.|.++++.+.+.- ..-+ ..+.-.|..-|...|-+|.|..+|..+.+.+.. -......|+..
T Consensus 72 ~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~ef-a~~AlqqLl~I 150 (389)
T COG2956 72 HLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEF-AEGALQQLLNI 150 (389)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhh-hHHHHHHHHHH
Confidence 3344444555555555555555444431 1000 111223444455555555555555555543211 22334445555
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCH
Q 003913 412 LCKAEETELTESLMKEFVETGMKPL----MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNI 487 (787)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~ 487 (787)
|-...++++|.++-+++.+.|-.+. ..-|.-|...+....+++.|..++.+..+-.+..+.+--.+.+.+...|++
T Consensus 151 YQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y 230 (389)
T COG2956 151 YQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDY 230 (389)
T ss_pred HHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccch
Confidence 5555555555555555555433332 223444555555555555555555555543333444444455555555555
Q ss_pred HHHHHHHHHhhhCCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCH
Q 003913 488 EKAEEIFNHMHSDQTIGVN--TRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIES 542 (787)
Q Consensus 488 ~~A~~l~~~m~~~~~~~p~--~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p 542 (787)
+.|.+.++...+.+ |+ ..+...|..+|.+.|+.++...++.++.+..-++++
T Consensus 231 ~~AV~~~e~v~eQn---~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~ 284 (389)
T COG2956 231 QKAVEALERVLEQN---PEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADA 284 (389)
T ss_pred HHHHHHHHHHHHhC---hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccH
Confidence 55555555555554 22 234445555555555555555555555554433333
No 65
>PRK12370 invasion protein regulator; Provisional
Probab=99.03 E-value=1e-07 Score=107.83 Aligned_cols=215 Identities=12% Similarity=0.020 Sum_probs=166.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHH---------hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 003913 311 IDKERISLLKKEMQQAGFEEGK-EVLLSVLRVCA---------KEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKI 380 (787)
Q Consensus 311 g~~~~a~~l~~~m~~~g~~p~~-~t~~~li~~~~---------~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 380 (787)
.+.++|..+|++..+ ..|+. ..|..+..++. ..+++++|...+++..+.++. +..++..+...+...
T Consensus 275 ~~~~~A~~~~~~Al~--ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 275 YSLQQALKLLTQCVN--MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHc
Confidence 346789999998886 46654 34555544443 234589999999999998754 678888898999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 003913 381 GEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPL-MPSYINLTNMYLNLGMHDRLHLA 459 (787)
Q Consensus 381 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~ 459 (787)
|++++|...|++..+.+ +.+...|..+...+...|++++|...+++..+. .|+ ...+..++..+...|++++|...
T Consensus 352 g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 352 SEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred cCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 99999999999998874 225667888999999999999999999999985 344 33444455567778999999999
Q ss_pred HHHHHhcCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 460 FSECLEKCRP-NRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 460 ~~~m~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
+++..+..+| +...+..+...|...|++++|...+.++.... +.+....+.+...|...| ++|...++.+.+
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE--ITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc--chhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 9998874444 56668888899999999999999999987653 233455566666778777 588888888765
No 66
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.01 E-value=2.9e-06 Score=92.81 Aligned_cols=297 Identities=18% Similarity=0.174 Sum_probs=199.8
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHH-HHHHHhc
Q 003913 149 YLAVHCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHI-LIVAYLS 227 (787)
Q Consensus 149 ~~~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~-li~~~~~ 227 (787)
|-...+...|++++|++.++.-.+. +.............|.+.|+.++|..++..+.+++ |+...|.. +..+...
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~ 84 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGL 84 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhh
Confidence 3334666889999999999876554 55567778888899999999999999999999986 55555544 4444421
Q ss_pred CC--cCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHH-HHHHHHHHHHHcCCccCHHHHHHHHHH
Q 003913 228 AP--VQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQ-QAEFIFHNLLTSGLEIQKDIYSGLIWL 304 (787)
Q Consensus 228 ~~--~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~-~A~~~~~~m~~~~~~p~~~~~~~li~~ 304 (787)
.. .....+...++|+++... -|.......+.-.+.. | ..+. .+...+..++..|++ .+++.+-
T Consensus 85 ~~~~~~~~~~~~~~~y~~l~~~---yp~s~~~~rl~L~~~~--g----~~F~~~~~~yl~~~l~KgvP---slF~~lk-- 150 (517)
T PF12569_consen 85 QLQLSDEDVEKLLELYDELAEK---YPRSDAPRRLPLDFLE--G----DEFKERLDEYLRPQLRKGVP---SLFSNLK-- 150 (517)
T ss_pred hcccccccHHHHHHHHHHHHHh---CccccchhHhhcccCC--H----HHHHHHHHHHHHHHHhcCCc---hHHHHHH--
Confidence 00 123577788899988764 3554444333322222 1 1333 566677788888874 4566555
Q ss_pred hhhccCCCHHHHHHHHHHHHHc----C----------CCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 003913 305 HSYQDNIDKERISLLKKEMQQA----G----------FEEGK--EVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTP 368 (787)
Q Consensus 305 ~~~~~~g~~~~a~~l~~~m~~~----g----------~~p~~--~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 368 (787)
..|.......-...++...... | -.|.. .++.-+...|-..|++++|.++.++.++..+. .+.
T Consensus 151 ~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~e 229 (517)
T PF12569_consen 151 PLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVE 229 (517)
T ss_pred HHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHH
Confidence 3344443444445555554432 1 12333 24456667777889999999999888887643 367
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH--------H
Q 003913 369 AFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPS--------Y 440 (787)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--------~ 440 (787)
.|..-...|-..|++.+|.+.++........ |...=+-....+.++|++++|.+++....+.+..|-... .
T Consensus 230 ly~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~ 308 (517)
T PF12569_consen 230 LYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFE 308 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHH
Confidence 7778888888899999999988888876443 666777778888889999999988888877665432211 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Q 003913 441 INLTNMYLNLGMHDRLHLAFSECLE 465 (787)
Q Consensus 441 ~~li~~~~~~g~~~~a~~~~~~m~~ 465 (787)
.-...+|.+.|++..|++-|..+.+
T Consensus 309 ~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 309 TECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3446678888888888777776654
No 67
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.98 E-value=1.8e-06 Score=93.64 Aligned_cols=406 Identities=9% Similarity=0.044 Sum_probs=264.4
Q ss_pred CccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHH
Q 003913 176 YRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPS 255 (787)
Q Consensus 176 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~ 255 (787)
+..|..+|..|.-++.++|++..+.+.|++....- .-....|+.+-..|. -.|.-..|+.+.+.-.... -.|+..
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~s---aag~~s~Av~ll~~~~~~~-~~ps~~ 393 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYS---AAGSDSKAVNLLRESLKKS-EQPSDI 393 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHH---HhccchHHHHHHHhhcccc-cCCCcc
Confidence 66788999999999999999999999999976532 225678888888888 6888999999998876531 125444
Q ss_pred H-HHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHc--CCc--cCHHHHHHHHHHhhh--ccCCC-------HHHHHHHHH
Q 003913 256 L-HNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTS--GLE--IQKDIYSGLIWLHSY--QDNID-------KERISLLKK 321 (787)
Q Consensus 256 t-~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~--~~~--p~~~~~~~li~~~~~--~~~g~-------~~~a~~l~~ 321 (787)
+ +-..-..|.+.. |.++++..+-.+++.. +.. .....|-.+...++. ..... ..++++.++
T Consensus 394 s~~Lmasklc~e~l-----~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale 468 (799)
T KOG4162|consen 394 SVLLMASKLCIERL-----KLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALE 468 (799)
T ss_pred hHHHHHHHHHHhch-----hhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHH
Confidence 4 444444455543 4777777777666652 111 111222222211221 11111 245677777
Q ss_pred HHHHcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCC
Q 003913 322 EMQQAG-FEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQER-LGS 399 (787)
Q Consensus 322 ~m~~~g-~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~ 399 (787)
+..+.+ -.|+..-|-++ -|+..++++.|.+..++..+.+..-+...|..|.-.+...+++.+|+.+.+...+. |.
T Consensus 469 ~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~- 545 (799)
T KOG4162|consen 469 EAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD- 545 (799)
T ss_pred HHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh-
Confidence 776643 44544444444 46688999999999999999977778999999999999999999999999876543 21
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHH---------------------cCCC-----C--CHHHHHHHHHHHHhcC
Q 003913 400 ASVPAYHKIIELLCKAEETELTESLMKEFVE---------------------TGMK-----P--LMPSYINLTNMYLNLG 451 (787)
Q Consensus 400 p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~---------------------~g~~-----p--~~~t~~~li~~~~~~g 451 (787)
|.+....-++.=...++.++|+.....+.. .|+. | ...++..+..-....+
T Consensus 546 -N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~ 624 (799)
T KOG4162|consen 546 -NHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL 624 (799)
T ss_pred -hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh
Confidence 211111112222224555555544443322 0110 0 1122222222111111
Q ss_pred CHHHHHHHHHHHHh-c--CCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCC
Q 003913 452 MHDRLHLAFSECLE-K--CRPN------RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGD 522 (787)
Q Consensus 452 ~~~~a~~~~~~m~~-~--~~p~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~ 522 (787)
+.+..-.. +.+ . -.|+ ...|....+.+.+.++.++|...+.+.... .+-....|......+...|.
T Consensus 625 --~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~ 699 (799)
T KOG4162|consen 625 --KSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQ 699 (799)
T ss_pred --hhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHh
Confidence 00000000 111 1 1222 345667788899999999999999988876 35677888888888999999
Q ss_pred HHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhhhhccchhhcce--eEE--E
Q 003913 523 FVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRH--MIR--F 598 (787)
Q Consensus 523 ~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~--~~~--~ 598 (787)
+++|.+.|..... ++|+. ..+..+|...+...|+-..+.. +.. +
T Consensus 700 ~~EA~~af~~Al~----ldP~h----------------------------v~s~~Ala~~lle~G~~~la~~~~~L~dal 747 (799)
T KOG4162|consen 700 LEEAKEAFLVALA----LDPDH----------------------------VPSMTALAELLLELGSPRLAEKRSLLSDAL 747 (799)
T ss_pred hHHHHHHHHHHHh----cCCCC----------------------------cHHHHHHHHHHHHhCCcchHHHHHHHHHHH
Confidence 9999999998886 88874 5566777777777787666665 444 8
Q ss_pred EEccCCcccHHHHHHHHHHchhhcCCCccccCCC
Q 003913 599 QFNENSRMHSVLRRYLYDQYHEWLHPSFKVSDGN 632 (787)
Q Consensus 599 ~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~ 632 (787)
.++|.++.++..|+.++.+.|+.+.|...|..+.
T Consensus 748 r~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 748 RLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred hhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 8999999999999999999999999988884443
No 68
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.98 E-value=3.4e-08 Score=95.83 Aligned_cols=229 Identities=12% Similarity=0.063 Sum_probs=194.3
Q ss_pred HhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHHcCC
Q 003913 304 LHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFV-YKMEAYAKIGE 382 (787)
Q Consensus 304 ~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~li~~~~~~g~ 382 (787)
..+|.+.|.+.+|.+.|+.-.+. .|-+.||..|-.+|.+....+.|..++.+-.+.- |-.+||- -+...+-..++
T Consensus 230 gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f--P~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 230 GKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF--PFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC--CchhhhhhhhHHHHHHHHh
Confidence 47888899999999999887774 6777889999999999999999999999888764 4445554 46788888899
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003913 383 FMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSE 462 (787)
Q Consensus 383 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~ 462 (787)
.++|.++|++..+.. +-|+.+...+..+|.-.++++-|+..++++++.|+. +...|+.+.-+|.-.++++-++.-|..
T Consensus 306 ~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred HHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 999999999988763 346777777888899999999999999999999954 688999999999999999999999999
Q ss_pred HHh-cCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCc
Q 003913 463 CLE-KCRPN--RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYE 539 (787)
Q Consensus 463 m~~-~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 539 (787)
... --.|+ ..+|-.|....+..|++.-|...|+-....+ +.+...+|.|.-.-.+.|+.++|..+++....
T Consensus 384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d--~~h~ealnNLavL~~r~G~i~~Arsll~~A~s---- 457 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD--AQHGEALNNLAVLAARSGDILGARSLLNAAKS---- 457 (478)
T ss_pred HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC--cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh----
Confidence 886 33344 4678889888999999999999999998876 45778999999999999999999999998876
Q ss_pred cCHHH
Q 003913 540 IESAW 544 (787)
Q Consensus 540 ~~p~~ 544 (787)
+.|+.
T Consensus 458 ~~P~m 462 (478)
T KOG1129|consen 458 VMPDM 462 (478)
T ss_pred hCccc
Confidence 56664
No 69
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.96 E-value=1.8e-06 Score=94.39 Aligned_cols=295 Identities=15% Similarity=0.136 Sum_probs=186.9
Q ss_pred HHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 003913 187 ADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVS 266 (787)
Q Consensus 187 i~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~ 266 (787)
+..+...|++++|++.++.-... .+|..+|.-.-.-+.. +.|+.++|..+|+.+++. .|+...|...+..+..
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~--kLg~~~eA~~~y~~Li~r---NPdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLL--KLGRKEEAEKIYRELIDR---NPDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHh
Confidence 34578899999999999885544 3577776665555443 899999999999999985 5898888877777662
Q ss_pred CCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003913 267 KPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNID-KERISLLKKEMQQAGFEEGKEVLLSVLRVCAKE 345 (787)
Q Consensus 267 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~-~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~ 345 (787)
..........+....+++++...-+ .......+. ..+..... ...+...+..+...|+++ +|+.|-..|...
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~yp--~s~~~~rl~--L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~ 156 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKYP--RSDAPRRLP--LDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDP 156 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhCc--cccchhHhh--cccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcCh
Confidence 2111111357788888888866553 233333332 11111111 234556667777777653 566666666655
Q ss_pred CChHHHHHHHHHHHhC----C----------CCCCHH--HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 003913 346 GDVEDAEKTWLRLLES----D----------NGIPTP--AFVYKMEAYAKIGEFMKSLEIFREMQERLGSAS-VPAYHKI 408 (787)
Q Consensus 346 g~~~~A~~~~~~m~~~----~----------~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l 408 (787)
.+.+-..+++...... + -.|... ++.-+...|-..|++++|++++++.++. .|+ +..|..-
T Consensus 157 ~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~K 234 (517)
T PF12569_consen 157 EKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTK 234 (517)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHH
Confidence 5555555555554432 1 123332 3345566777788888888888877765 444 4567777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCC--CHH----HH--HHHHH
Q 003913 409 IELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE-KCRP--NRT----IY--GIYLE 479 (787)
Q Consensus 409 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-~~~p--~~~----~~--~~li~ 479 (787)
...+-..|++.+|.+.++..+... .-|...-+-.+..+.++|++++|.+++....+ +..| |.. .| .....
T Consensus 235 arilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~ 313 (517)
T PF12569_consen 235 ARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAE 313 (517)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHH
Confidence 777778888888888888877755 33566666677777778888888877777665 2222 111 22 23356
Q ss_pred HHHhcCCHHHHHHHHHHhh
Q 003913 480 SLKNAGNIEKAEEIFNHMH 498 (787)
Q Consensus 480 ~~~~~g~~~~A~~l~~~m~ 498 (787)
+|.+.|++..|++-|....
T Consensus 314 a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 314 AYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 6777777777766655543
No 70
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.91 E-value=2.4e-05 Score=83.19 Aligned_cols=483 Identities=12% Similarity=0.102 Sum_probs=268.0
Q ss_pred HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCC------CCCCHhHHHHHHHHHh
Q 003913 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQG------RVPSEMTFHILIVAYL 226 (787)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g------~~pd~~ty~~li~~~~ 226 (787)
-....+-++-+.+++++-.+-. ...-+--|..+++.+++++|.+.+....... -+-+...|+-+-.-.+
T Consensus 147 Fv~~~~lPets~rvyrRYLk~~-----P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis 221 (835)
T KOG2047|consen 147 FVESHGLPETSIRVYRRYLKVA-----PEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLIS 221 (835)
T ss_pred HHHhCCChHHHHHHHHHHHhcC-----HHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHH
Confidence 3446677788888888887643 2335667788888888888888888776532 1224455666666555
Q ss_pred cCCcCCCHHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHH
Q 003913 227 SAPVQGCLDEACSIYNRMIQLGGYQPRP--SLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWL 304 (787)
Q Consensus 227 ~~~~~g~~~~A~~l~~~m~~~~g~~pd~--~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 304 (787)
++-+.-.-+.+=.-|+.--+.-||. ..|++|-+-|.+. |.++.|..++++.+..-..... ++.+...
T Consensus 222 ---~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~------g~~ekarDvyeeai~~v~tvrD--Ft~ifd~ 290 (835)
T KOG2047|consen 222 ---QNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRS------GLFEKARDVYEEAIQTVMTVRD--FTQIFDA 290 (835)
T ss_pred ---hCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHh------hhhHHHHHHHHHHHHhheehhh--HHHHHHH
Confidence 3444444444433333311233454 3577888888876 7899999999887765433222 2222211
Q ss_pred hhhc--------------cCCC------HHHHHHHHHHHHHcCC----------CC-CHHHHHHHHHHHHhcCChHHHHH
Q 003913 305 HSYQ--------------DNID------KERISLLKKEMQQAGF----------EE-GKEVLLSVLRVCAKEGDVEDAEK 353 (787)
Q Consensus 305 ~~~~--------------~~g~------~~~a~~l~~~m~~~g~----------~p-~~~t~~~li~~~~~~g~~~~A~~ 353 (787)
++.. ..++ ++-.+.-|+.+...+. .| ++.+|..-+. +..|+..+-..
T Consensus 291 Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~ 368 (835)
T KOG2047|consen 291 YAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQIN 368 (835)
T ss_pred HHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHH
Confidence 1110 0000 1111222222221110 01 1122222211 13456666666
Q ss_pred HHHHHHhC-CC----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChHHHHHHH
Q 003913 354 TWLRLLES-DN----GIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSAS---VPAYHKIIELLCKAEETELTESLM 425 (787)
Q Consensus 354 ~~~~m~~~-~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~li~~~~~~g~~~~A~~l~ 425 (787)
++.+..+. ++ ..-...|..+.+.|-..|+++.|..+|++..+...+-= ..+|..-...=.++.+++.|+.++
T Consensus 369 tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm 448 (835)
T KOG2047|consen 369 TYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLM 448 (835)
T ss_pred HHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 67666553 11 11235688889999999999999999998876533211 124444444445667788888877
Q ss_pred HHHHHcCC----------CC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-c-CCCCHHHHHHHHHHHHhcCC
Q 003913 426 KEFVETGM----------KP-------LMPSYINLTNMYLNLGMHDRLHLAFSECLE-K-CRPNRTIYGIYLESLKNAGN 486 (787)
Q Consensus 426 ~~m~~~g~----------~p-------~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-~-~~p~~~~~~~li~~~~~~g~ 486 (787)
+.....-- .| ....|...++.--..|-++....+|+.+++ . ..|-+. -.....+-.+.-
T Consensus 449 ~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii--~NyAmfLEeh~y 526 (835)
T KOG2047|consen 449 RRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQII--INYAMFLEEHKY 526 (835)
T ss_pred HhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHH--HHHHHHHHhhHH
Confidence 76653111 11 123455556666677888889999999987 3 333322 222233445667
Q ss_pred HHHHHHHHHHhhhCCCCCCCH-HHHHHHHHHHHc---CCCHHHHHHHHHHHHHcCCccCHHHHHH-------HHHHHhhc
Q 003913 487 IEKAEEIFNHMHSDQTIGVNT-RSCNIILSAYLS---SGDFVKAEKIYDLMCLKKYEIESAWMEK-------LDYVLSLN 555 (787)
Q Consensus 487 ~~~A~~l~~~m~~~~~~~p~~-~t~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~~~p~~~~~-------l~~~~~l~ 555 (787)
++++.+++++-+..= -.|++ ..|+..+.-+.+ .-..+.|..+|+..++ |.+ |...+. +.+-..+.
T Consensus 527 feesFk~YErgI~LF-k~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cp--p~~aKtiyLlYA~lEEe~GLa 602 (835)
T KOG2047|consen 527 FEESFKAYERGISLF-KWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCP--PEHAKTIYLLYAKLEEEHGLA 602 (835)
T ss_pred HHHHHHHHHcCCccC-CCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCC--HHHHHHHHHHHHHHHHHhhHH
Confidence 889999988877663 23443 467777665553 3358999999999996 654 432221 11111222
Q ss_pred ccccc--cccccCCchHHHHHHHHHHhhhhhhccchhhcceeEE--EEEccCCcccHHH--HHHHHHHchhhcCCCcccc
Q 003913 556 RKEVK--KPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVL--RRYLYDQYHEWLHPSFKVS 629 (787)
Q Consensus 556 ~~~~~--~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--~~~~p~~~~~~~~--l~~~y~~~g~~~~A~~~~~ 629 (787)
+..+. ..........+....|+..|.-.+..=-+..-+.+++ ++.-|++..-... .+++-.+.|.++.|...+.
T Consensus 603 r~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya 682 (835)
T KOG2047|consen 603 RHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYA 682 (835)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 22221 1223344445556777777753332222233334444 4445655443333 4778888999999888874
Q ss_pred CCCCCc-----ceEEeeeccchHHHHHHhhccCcccccccch
Q 003913 630 DGNDDI-----PYKYSTISHPYFCFYADKFWPKGRLVIPKLI 666 (787)
Q Consensus 630 ~~~~~~-----p~~~~t~~~~~~~~~~~g~~~~a~~~~~~mi 666 (787)
-+.+.. +..|.+|.. .-.++|. +..+.+|+
T Consensus 683 ~~sq~~dPr~~~~fW~twk~---FEvrHGn----edT~keML 717 (835)
T KOG2047|consen 683 HGSQICDPRVTTEFWDTWKE---FEVRHGN----EDTYKEML 717 (835)
T ss_pred hhhhcCCCcCChHHHHHHHH---HHHhcCC----HHHHHHHH
Confidence 443332 233666655 4455554 34455555
No 71
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.89 E-value=1.4e-06 Score=90.12 Aligned_cols=218 Identities=15% Similarity=0.085 Sum_probs=151.4
Q ss_pred CCCHHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHH
Q 003913 310 NIDKERISLLKKEMQQAG-FEEG--KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKS 386 (787)
Q Consensus 310 ~g~~~~a~~l~~~m~~~g-~~p~--~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 386 (787)
.+..+.++.-+.++.... ..|+ ...|..+...|...|+.++|...|.+..+..+. +...|+.+...|...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHH
Confidence 344566666666666432 2332 345777777888999999999999999888754 678899999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003913 387 LEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEK 466 (787)
Q Consensus 387 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 466 (787)
...|++..+.... +..+|..+..++...|++++|.+.+++..+. .|+..........+...++.++|...|......
T Consensus 118 ~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 118 YEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999999875322 4667888888899999999999999998874 444322222222344567899999999776653
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-----CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 467 CRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTI-----GVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 467 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~-----~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
..|+...| .+ .+...|+..++ +.++.+.+.... +....+|..+...+.+.|++++|+..|++..+
T Consensus 195 ~~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 195 LDKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred CCccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33433222 22 22334555444 344444422100 11346899999999999999999999999987
No 72
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.85 E-value=1.9e-06 Score=93.12 Aligned_cols=244 Identities=19% Similarity=0.267 Sum_probs=146.9
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHHC-----C-CCCCHhHH-HHHHHHHhcCCcCCCHHHHHHHHHHHHHh-----
Q 003913 180 FALATKLADYMGKERKFAKCRDIFDDIINQ-----G-RVPSEMTF-HILIVAYLSAPVQGCLDEACSIYNRMIQL----- 247 (787)
Q Consensus 180 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-----g-~~pd~~ty-~~li~~~~~~~~~g~~~~A~~l~~~m~~~----- 247 (787)
..+...|..+|...|+++.|..++.+-.+. | ..|.+.+- +.+-..|. ..+++++|..+|+++...
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~---~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYR---SLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHH---HhccHHHHHHHHHHHHHHHHHhc
Confidence 445666999999999999999999987653 2 12344433 23445566 689999999999998753
Q ss_pred CCCCCCH-HHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHc
Q 003913 248 GGYQPRP-SLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQA 326 (787)
Q Consensus 248 ~g~~pd~-~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~ 326 (787)
|...|.+ .+++.|-.+|++. |++++|...+++.. ++++. ..
T Consensus 276 G~~h~~va~~l~nLa~ly~~~------GKf~EA~~~~e~Al------------------------------~I~~~--~~ 317 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYYKQ------GKFAEAEEYCERAL------------------------------EIYEK--LL 317 (508)
T ss_pred CCCCHHHHHHHHHHHHHHhcc------CChHHHHHHHHHHH------------------------------HHHHH--hh
Confidence 1222322 2344444455554 57777777765543 23332 11
Q ss_pred CC-CCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 003913 327 GF-EEGKE-VLLSVLRVCAKEGDVEDAEKTWLRLLES---DNGIP----TPAFVYKMEAYAKIGEFMKSLEIFREMQERL 397 (787)
Q Consensus 327 g~-~p~~~-t~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 397 (787)
|. .|.+. .++.+...|+..+++++|..+++...+. -+.++ ..+++.|...|.+.|++++|.++|++...+.
T Consensus 318 ~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 318 GASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL 397 (508)
T ss_pred ccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 21 22332 3567777888889999988888765542 11112 3467778888888888888888888765431
Q ss_pred ----C--CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH----cCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003913 398 ----G--SAS-VPAYHKIIELLCKAEETELTESLMKEFVE----TGM-KPL-MPSYINLTNMYLNLGMHDRLHLAFSECL 464 (787)
Q Consensus 398 ----~--~p~-~~t~~~li~~~~~~g~~~~A~~l~~~m~~----~g~-~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~ 464 (787)
- .+. -..++.|...|.+.+..++|.++|.+... .|. .|+ ..+|..|...|.+.|++++|.++.+...
T Consensus 398 ~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 398 RELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1 111 23456666777777777777777766443 111 111 3445555555555555555555544443
No 73
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=6e-06 Score=86.65 Aligned_cols=268 Identities=12% Similarity=0.041 Sum_probs=157.7
Q ss_pred cCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhcc
Q 003913 230 VQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQD 309 (787)
Q Consensus 230 ~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 309 (787)
..+++.+..++++...+.+++.++ .+..=|.++... |+..+-..+=+++++.-+. ...+|+..+.-|--
T Consensus 256 ~~c~f~~c~kit~~lle~dpfh~~--~~~~~ia~l~el------~~~n~Lf~lsh~LV~~yP~---~a~sW~aVg~YYl~ 324 (611)
T KOG1173|consen 256 YGCRFKECLKITEELLEKDPFHLP--CLPLHIACLYEL------GKSNKLFLLSHKLVDLYPS---KALSWFAVGCYYLM 324 (611)
T ss_pred HcChHHHHHHHhHHHHhhCCCCcc--hHHHHHHHHHHh------cccchHHHHHHHHHHhCCC---CCcchhhHHHHHHH
Confidence 455666666666666554333333 223333333332 2333333344444443322 11222222233333
Q ss_pred CCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHH
Q 003913 310 NIDKERISLLKKEMQQAGFEEG-KEVLLSVLRVCAKEGDVEDAEKTWLRLLES--DNGIPTPAFVYKMEAYAKIGEFMKS 386 (787)
Q Consensus 310 ~g~~~~a~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~A 386 (787)
.|...+|.+.|.+... +.|. ...|-...+.|+-.|.-|+|...+...-+. |.. -+..| +.--|.+.+..+-|
T Consensus 325 i~k~seARry~SKat~--lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LY--lgmey~~t~n~kLA 399 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATT--LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLY--LGMEYMRTNNLKLA 399 (611)
T ss_pred hcCcHHHHHHHHHHhh--cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHH--HHHHHHHhccHHHH
Confidence 3555666666654432 2332 234555666666666666666655554443 211 11222 23355666666777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CC---C-CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003913 387 LEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVET--GM---K-PLMPSYINLTNMYLNLGMHDRLHLAF 460 (787)
Q Consensus 387 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~--g~---~-p~~~t~~~li~~~~~~g~~~~a~~~~ 460 (787)
.+.|.+.... .+-|+...+-+.-.....+.+.+|..+|+..+.. .+ + --..+++.|.++|.+.+++++|+..|
T Consensus 400 e~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 400 EKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 7776666543 2224555555555555566677777776665521 00 1 13567899999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHH
Q 003913 461 SECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAY 517 (787)
Q Consensus 461 ~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~ 517 (787)
+..+..++.|..+|.++.-.|...|+++.|.+.|.+.... .||..+-..++..+
T Consensus 479 q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l---~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 479 QKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL---KPDNIFISELLKLA 532 (611)
T ss_pred HHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc---CCccHHHHHHHHHH
Confidence 9998888899999999999999999999999999998874 57877766666543
No 74
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.81 E-value=6.7e-06 Score=85.09 Aligned_cols=229 Identities=11% Similarity=-0.024 Sum_probs=162.4
Q ss_pred hhHHHHHHHHHHHHHcC-CccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHH
Q 003913 274 YYLQQAEFIFHNLLTSG-LEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEE-GKEVLLSVLRVCAKEGDVEDA 351 (787)
Q Consensus 274 g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A 351 (787)
+..+.+..-+.+++... +.|+...-.+...+..+...|+.++|...|++..+. .| +...|+.+...+...|++++|
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--RPDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCCHHHH
Confidence 46677777777777543 333333333444457788999999999999998874 45 567899999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003913 352 EKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVET 431 (787)
Q Consensus 352 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 431 (787)
...|+...+..+. +..+|..+..++...|++++|.+.|++..+.. |+..........+...++.++|...+.+....
T Consensus 118 ~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 118 YEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999999987754 56788889999999999999999999998763 43321222222344567899999999776543
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC
Q 003913 432 GMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKC-------RPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIG 504 (787)
Q Consensus 432 g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~-------~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 504 (787)
. .|+... .. ......|+...+ ..+..+.+.. +....+|..+...|.+.|++++|+..|++..+.+ +
T Consensus 195 ~-~~~~~~-~~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~--~ 267 (296)
T PRK11189 195 L-DKEQWG-WN--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN--V 267 (296)
T ss_pred C-CccccH-HH--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--C
Confidence 2 333222 22 333345555544 3555555322 2234689999999999999999999999999875 4
Q ss_pred CCHHHHHHHH
Q 003913 505 VNTRSCNIIL 514 (787)
Q Consensus 505 p~~~t~~~li 514 (787)
||.+-+...+
T Consensus 268 ~~~~e~~~~~ 277 (296)
T PRK11189 268 YNFVEHRYAL 277 (296)
T ss_pred chHHHHHHHH
Confidence 5666555433
No 75
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.78 E-value=1.2e-05 Score=85.48 Aligned_cols=480 Identities=13% Similarity=0.135 Sum_probs=247.9
Q ss_pred hhccccCCcchHHHHH-HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHC-CCCCC
Q 003913 137 AQKKWLRQEDGTYLAV-HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQ-GRVPS 214 (787)
Q Consensus 137 ~~~~~~~p~~~t~~~~-~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-g~~pd 214 (787)
.+.++..|..-.|-.+ .| ++.++.+...|. ..|-.-+..+.+.|++...+..|+..... -+.--
T Consensus 72 ~~vk~~~~T~~~~~~vn~c-----~er~lv~mHkmp---------RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH 137 (835)
T KOG2047|consen 72 AQVKHLCPTDPAYESVNNC-----FERCLVFMHKMP---------RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQH 137 (835)
T ss_pred HHhhccCCCChHHHHHHHH-----HHHHHHHHhcCC---------HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhh
Confidence 4445677777666666 44 344444444442 35556677778889999999998886653 22222
Q ss_pred HhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCc--
Q 003913 215 EMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLE-- 292 (787)
Q Consensus 215 ~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~-- 292 (787)
...|...|.-.- ..+-++-++.+|+.-.+ +.|.. -+--|.-++.. +++++|.+.+...+....-
T Consensus 138 ~rIW~lyl~Fv~---~~~lPets~rvyrRYLk---~~P~~--~eeyie~L~~~------d~~~eaa~~la~vln~d~f~s 203 (835)
T KOG2047|consen 138 DRIWDLYLKFVE---SHGLPETSIRVYRRYLK---VAPEA--REEYIEYLAKS------DRLDEAAQRLATVLNQDEFVS 203 (835)
T ss_pred ccchHHHHHHHH---hCCChHHHHHHHHHHHh---cCHHH--HHHHHHHHHhc------cchHHHHHHHHHhcCchhhhh
Confidence 356777776665 67888889999988876 45654 34455556665 5888888888777543211
Q ss_pred ----cCHHHHHHHHHHhhhccCCC---HHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 003913 293 ----IQKDIYSGLIWLHSYQDNID---KERISLLKKEMQQAGFEEGK--EVLLSVLRVCAKEGDVEDAEKTWLRLLESDN 363 (787)
Q Consensus 293 ----p~~~~~~~li~~~~~~~~g~---~~~a~~l~~~m~~~g~~p~~--~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 363 (787)
.+.-.+.-+. ....++.+ --.+..+++.+.. .-+|. ..|++|.+-|.+.|+++.|..+|++....-.
T Consensus 204 k~gkSn~qlw~elc--dlis~~p~~~~slnvdaiiR~gi~--rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~ 279 (835)
T KOG2047|consen 204 KKGKSNHQLWLELC--DLISQNPDKVQSLNVDAIIRGGIR--RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVM 279 (835)
T ss_pred hcccchhhHHHHHH--HHHHhCcchhcccCHHHHHHhhcc--cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhe
Confidence 0111111111 11111111 1112233333332 23443 3577888888888888888888887766532
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHH--HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC---------
Q 003913 364 GIPTPAFVYKMEAYAKIGEFMKSLEIFREMQ--ERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETG--------- 432 (787)
Q Consensus 364 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g--------- 432 (787)
.+.-|+.+-++|+.-..-.-+..+= +. +.|-.-+...+ +-...-|+.+...+
T Consensus 280 --tvrDFt~ifd~Ya~FEE~~~~~~me--~a~~~~~n~ed~~dl-------------~~~~a~~e~lm~rr~~~lNsVlL 342 (835)
T KOG2047|consen 280 --TVRDFTQIFDAYAQFEESCVAAKME--LADEESGNEEDDVDL-------------ELHMARFESLMNRRPLLLNSVLL 342 (835)
T ss_pred --ehhhHHHHHHHHHHHHHHHHHHHHh--hhhhcccChhhhhhH-------------HHHHHHHHHHHhccchHHHHHHH
Confidence 4455566666665432211111110 10 11111111111 11222222222211
Q ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC
Q 003913 433 --MKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPN------RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIG 504 (787)
Q Consensus 433 --~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 504 (787)
-.-++.+|..-+. +..|+..+-...|.+..+.+.|- ...|..+.+.|-..|+++.|..+|++..+-. .+
T Consensus 343 RQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~-y~ 419 (835)
T KOG2047|consen 343 RQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP-YK 419 (835)
T ss_pred hcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC-cc
Confidence 1122333333332 23456667777777777644332 3467888888888899999999998887643 11
Q ss_pred C---CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHhh
Q 003913 505 V---NTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLG 581 (787)
Q Consensus 505 p---~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~ 581 (787)
- -..+|..-...=.++.+++.|+++.++.... |.+..++.+... .+++..+- -...+|.-+++
T Consensus 420 ~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v---P~~~~~~~yd~~---------~pvQ~rlh--rSlkiWs~y~D 485 (835)
T KOG2047|consen 420 TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV---PTNPELEYYDNS---------EPVQARLH--RSLKIWSMYAD 485 (835)
T ss_pred chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC---CCchhhhhhcCC---------CcHHHHHH--HhHHHHHHHHH
Confidence 1 1346666666677788888888887776632 333211111100 00000110 01344555555
Q ss_pred hhhhccchhhcceeEE--EEEccCCcccHHHHHHHHHHchhhcCCCccccCCCCCcceE-----EeeeccchHHHHHHhh
Q 003913 582 GLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSFKVSDGNDDIPYK-----YSTISHPYFCFYADKF 654 (787)
Q Consensus 582 ~~~~~~~~~~a~~~~~--~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~p~~-----~~t~~~~~~~~~~~g~ 654 (787)
.--..|-++.-+.+++ +.+.--.+..-...+..+.....++++-..++++...-+.. |++|-.....-+....
T Consensus 486 leEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~k 565 (835)
T KOG2047|consen 486 LEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTK 565 (835)
T ss_pred HHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCC
Confidence 4444444444444444 23322223333333444555555666666666666654331 3343333333333333
Q ss_pred ccCcccccccchhhcCChhHHHHHhhcCC
Q 003913 655 WPKGRLVIPKLIHRWLTPRALAYWFMYGG 683 (787)
Q Consensus 655 ~~~a~~~~~~mi~~gl~P~~lay~~m~~g 683 (787)
.+.+..+|++.++ |+.|...-+.++.-+
T Consensus 566 lEraRdLFEqaL~-~Cpp~~aKtiyLlYA 593 (835)
T KOG2047|consen 566 LERARDLFEQALD-GCPPEHAKTIYLLYA 593 (835)
T ss_pred HHHHHHHHHHHHh-cCCHHHHHHHHHHHH
Confidence 4455566776666 666666555555443
No 76
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=1.6e-05 Score=80.11 Aligned_cols=273 Identities=13% Similarity=0.037 Sum_probs=186.8
Q ss_pred CCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCc--cCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcC
Q 003913 250 YQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLE--IQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAG 327 (787)
Q Consensus 250 ~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g 327 (787)
++-|+.....+-..+... |+.++|...|+.....++. -..+.|..|+ ...|+.++...+...+....
T Consensus 228 lr~NvhLl~~lak~~~~~------Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL-----~~eg~~e~~~~L~~~Lf~~~ 296 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYN------GDYFQAEDIFSSTLCANPDNVEAMDLYAVLL-----GQEGGCEQDSALMDYLFAKV 296 (564)
T ss_pred CCccHHHHHHHhhhhhhh------cCchHHHHHHHHHhhCChhhhhhHHHHHHHH-----HhccCHhhHHHHHHHHHhhh
Confidence 333444444444444443 5777777777766544421 1223444443 55566666666666655431
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003913 328 FEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHK 407 (787)
Q Consensus 328 ~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 407 (787)
.-...-|-.-.......++++.|..+-++.++.+.. +...|..-...+...|+.++|.-.|+..+.-. +-+...|.-
T Consensus 297 -~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~G 373 (564)
T KOG1174|consen 297 -KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRG 373 (564)
T ss_pred -hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHH
Confidence 112222222333344667888888888888776643 55666666777888899999999999877542 236788999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHh-cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 003913 408 IIELLCKAEETELTESLMKEFVETGMKPLMPSYINLT-NMYLN-LGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAG 485 (787)
Q Consensus 408 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li-~~~~~-~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g 485 (787)
|+..|...|++.+|.-+-++..+. +.-+..+.+.+. ..|.- ...-++|.+++++-++..+.-....+.+...+...|
T Consensus 374 L~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg 452 (564)
T KOG1174|consen 374 LFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEG 452 (564)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhC
Confidence 999999999999988777665552 234455555552 33332 334678999998887754555667888888999999
Q ss_pred CHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHH
Q 003913 486 NIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAW 544 (787)
Q Consensus 486 ~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~ 544 (787)
+.++++.++++.... .||....+.|...+...+.+.+|+..|...++ ++|..
T Consensus 453 ~~~D~i~LLe~~L~~---~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr----~dP~~ 504 (564)
T KOG1174|consen 453 PTKDIIKLLEKHLII---FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR----QDPKS 504 (564)
T ss_pred ccchHHHHHHHHHhh---ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh----cCccc
Confidence 999999999998885 58999999999999999999999999999886 67764
No 77
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.76 E-value=5.2e-06 Score=90.23 Aligned_cols=406 Identities=9% Similarity=-0.063 Sum_probs=242.1
Q ss_pred CCCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcC
Q 003913 211 RVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSG 290 (787)
Q Consensus 211 ~~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~ 290 (787)
+.-|...|..+--++. +.|++..+-+.|++... +.--....|+.+-..+... |.-..|..+++.-....
T Consensus 319 ~qnd~ai~d~Lt~al~---~~g~f~~lae~fE~~~~--~~~~~~e~w~~~als~saa------g~~s~Av~ll~~~~~~~ 387 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALS---RCGQFEVLAEQFEQALP--FSFGEHERWYQLALSYSAA------GSDSKAVNLLRESLKKS 387 (799)
T ss_pred hcchHHHHHHHHHHHH---HHHHHHHHHHHHHHHhH--hhhhhHHHHHHHHHHHHHh------ccchHHHHHHHhhcccc
Confidence 3446677777777777 67888888888887765 3344444555554444443 46667777777766555
Q ss_pred CccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHH--cCC--CCCHHHHHHHHHHHHh-----------cCChHHHHHHH
Q 003913 291 LEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQ--AGF--EEGKEVLLSVLRVCAK-----------EGDVEDAEKTW 355 (787)
Q Consensus 291 ~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~--~g~--~p~~~t~~~li~~~~~-----------~g~~~~A~~~~ 355 (787)
..|+..+.-.++.-.+..+-+..++++..-.+... .|. ......|..+.-+|.. .....++.+.+
T Consensus 388 ~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqal 467 (799)
T KOG4162|consen 388 EQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQAL 467 (799)
T ss_pred cCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHH
Confidence 44443333333322233344455555555444443 111 1123334444444432 12234566667
Q ss_pred HHHHhCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CC
Q 003913 356 LRLLESDNG-IPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVET-GM 433 (787)
Q Consensus 356 ~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~-g~ 433 (787)
++..+.+.. |++..| +---|+-.++++.|.+..++..+-+-.-+...|.-|.-.+...+++.+|+.+.+..... |.
T Consensus 468 e~av~~d~~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~ 545 (799)
T KOG4162|consen 468 EEAVQFDPTDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD 545 (799)
T ss_pred HHHHhcCCCCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh
Confidence 777666543 333333 44467777888888888888887766667888888888888888888888888776652 21
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----------------------c------CCC-CHHHHHHHHHHHHhc
Q 003913 434 KPLMPSYINLTNMYLNLGMHDRLHLAFSECLE----------------------K------CRP-NRTIYGIYLESLKNA 484 (787)
Q Consensus 434 ~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~----------------------~------~~p-~~~~~~~li~~~~~~ 484 (787)
|......-++.-...++.+++......++. + .+. ...++..+..-...
T Consensus 546 --N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~- 622 (799)
T KOG4162|consen 546 --NHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS- 622 (799)
T ss_pred --hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh-
Confidence 111111111111123333333333222221 0 011 12222222222211
Q ss_pred CCHHHHHHHHHHhhhCCCCC--CC------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcc
Q 003913 485 GNIEKAEEIFNHMHSDQTIG--VN------TRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNR 556 (787)
Q Consensus 485 g~~~~A~~l~~~m~~~~~~~--p~------~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~ 556 (787)
+.+.+..-.. |...- +. |+ ...|......+.+.+..++|...+.+... +.|-.
T Consensus 623 -~~~~~~se~~-Lp~s~-~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~----~~~l~------------ 683 (799)
T KOG4162|consen 623 -QLKSAGSELK-LPSST-VLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK----IDPLS------------ 683 (799)
T ss_pred -hhhhcccccc-cCccc-ccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh----cchhh------------
Confidence 1111110000 22111 12 22 35777888899999999999999998875 55543
Q ss_pred cccccccccCCchHHHHHHHHHHhhhhhhccchhhcceeEE--EEEccCCcccHHHHHHHHHHchhhcCCCc--cccCCC
Q 003913 557 KEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSF--KVSDGN 632 (787)
Q Consensus 557 ~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--~~~~p~~~~~~~~l~~~y~~~g~~~~A~~--~~~~~~ 632 (787)
...|.-.....-..|..++|.+.+. +.++|+++.....++.++.+.|+-.-|.. .++++.
T Consensus 684 ----------------~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dal 747 (799)
T KOG4162|consen 684 ----------------ASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDAL 747 (799)
T ss_pred ----------------HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHH
Confidence 4455555555666788888988887 89999999999999999999997666655 678899
Q ss_pred CCcceEEeeeccchHHHHHHhhccCcccccccchh
Q 003913 633 DDIPYKYSTISHPYFCFYADKFWPKGRLVIPKLIH 667 (787)
Q Consensus 633 ~~~p~~~~t~~~~~~~~~~~g~~~~a~~~~~~mi~ 667 (787)
..+|.+...|...+..+-..|..+.|-..|.-.+.
T Consensus 748 r~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 748 RLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred hhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 99999999999999999999999988877765443
No 78
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.73 E-value=4.9e-05 Score=81.49 Aligned_cols=201 Identities=10% Similarity=0.008 Sum_probs=116.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCH--HHHHHHHH
Q 003913 334 VLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLG-SASV--PAYHKIIE 410 (787)
Q Consensus 334 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~t~~~li~ 410 (787)
....+...+...|++++|.+.+++..+..+. +...+..+...|...|++++|...+++...... .|+. ..|..+..
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~ 194 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLAL 194 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHH
Confidence 3345556667778888888888877776643 455666777777778888888888777665421 1222 23456677
Q ss_pred HHHhcCChHHHHHHHHHHHHcCC-CCCHHHH-H--HHHHHHHhcCCHHHHHHH--H-HHHHhcCC--CCHHHHHHHHHHH
Q 003913 411 LLCKAEETELTESLMKEFVETGM-KPLMPSY-I--NLTNMYLNLGMHDRLHLA--F-SECLEKCR--PNRTIYGIYLESL 481 (787)
Q Consensus 411 ~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~-~--~li~~~~~~g~~~~a~~~--~-~~m~~~~~--p~~~~~~~li~~~ 481 (787)
.+...|+.++|..++++...... .+..... + .++.-+...|....+.++ . ........ ...........++
T Consensus 195 ~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~ 274 (355)
T cd05804 195 FYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALAL 274 (355)
T ss_pred HHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 77788888888888877754321 1222111 1 333333344433333222 1 11111111 1112223466777
Q ss_pred HhcCCHHHHHHHHHHhhhCC-------CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 482 KNAGNIEKAEEIFNHMHSDQ-------TIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 482 ~~~g~~~~A~~l~~~m~~~~-------~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
...|+.++|..+++.+.... .....+.......-++...|++++|.+.+.+...
T Consensus 275 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 275 AGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred hcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 78899999999998886632 0001122223333456689999999999988875
No 79
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.71 E-value=0.00018 Score=77.14 Aligned_cols=362 Identities=12% Similarity=0.119 Sum_probs=189.6
Q ss_pred HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCC
Q 003913 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQG 232 (787)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g 232 (787)
.+...|+-++|....+.-.+.. .-+.+.|..+.-.+-...++++|++.|......+-. |...|.-+----+ +.|
T Consensus 50 ~L~~lg~~~ea~~~vr~glr~d--~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~---QmR 123 (700)
T KOG1156|consen 50 TLNCLGKKEEAYELVRLGLRND--LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQI---QMR 123 (700)
T ss_pred hhhcccchHHHHHHHHHHhccC--cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHH---HHH
Confidence 4456677777777776666654 234455665555555566777777777776654321 3444443322222 446
Q ss_pred CHHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcC-CccCHHHHHHHH----HHhh
Q 003913 233 CLDEACSIYNRMIQLGGYQPRP-SLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSG-LEIQKDIYSGLI----WLHS 306 (787)
Q Consensus 233 ~~~~A~~l~~~m~~~~g~~pd~-~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~li----~~~~ 306 (787)
+++-....-.+..+. .|.. ..|....-+.--. |+...|..+.++..+.. -.|+...+.... ....
T Consensus 124 d~~~~~~tr~~LLql---~~~~ra~w~~~Avs~~L~------g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i 194 (700)
T KOG1156|consen 124 DYEGYLETRNQLLQL---RPSQRASWIGFAVAQHLL------GEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQI 194 (700)
T ss_pred hhhhHHHHHHHHHHh---hhhhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Confidence 666666666665552 3332 2233222222222 57778888877776554 234555544322 2333
Q ss_pred hccCCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHHcCChH
Q 003913 307 YQDNIDKERISLLKKEMQQAGFEEGKEVL-LSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVY-KMEAYAKIGEFM 384 (787)
Q Consensus 307 ~~~~g~~~~a~~l~~~m~~~g~~p~~~t~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-li~~~~~~g~~~ 384 (787)
....|..+.|++.+..-... ..|...+ ..-...+.+.+++++|..++..++.++ ||...|.- +..++.+--+.-
T Consensus 195 ~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~ 270 (700)
T KOG1156|consen 195 LIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDML 270 (700)
T ss_pred HHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhH
Confidence 45666666666665543321 1233332 344556667888888888888888776 45444443 444444333333
Q ss_pred HHH-HHHHHH----------------------------------HHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003913 385 KSL-EIFREM----------------------------------QERLGSASVPAYHKIIELLCKAEETELTESLMKEFV 429 (787)
Q Consensus 385 ~A~-~~~~~m----------------------------------~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~ 429 (787)
+++ .+|... .++|+++ ++..+..-|-.-...+-..++.-.+.
T Consensus 271 ~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~ 347 (700)
T KOG1156|consen 271 EALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQ 347 (700)
T ss_pred HHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHH
Confidence 333 334333 3333332 12222222211111111111111111
Q ss_pred H--cCC------------CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003913 430 E--TGM------------KPLM--PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEI 493 (787)
Q Consensus 430 ~--~g~------------~p~~--~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l 493 (787)
. .|- +|.. -|+-.++..|-+.|+++.|....+..+..++.-+.-|..=.+.+...|.+++|..+
T Consensus 348 ~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~ 427 (700)
T KOG1156|consen 348 HSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAW 427 (700)
T ss_pred hhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHH
Confidence 1 011 2332 23445566667777777777777776665554455566666667777777777777
Q ss_pred HHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC
Q 003913 494 FNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKY 538 (787)
Q Consensus 494 ~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 538 (787)
+++..+.+ .||...=..-..-..++.+.++|.++.....+.|.
T Consensus 428 l~ea~elD--~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 428 LDEAQELD--TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHhcc--chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 77777665 34544433444555566777777777777766664
No 80
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.65 E-value=1.7e-05 Score=74.27 Aligned_cols=198 Identities=17% Similarity=0.101 Sum_probs=157.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003913 334 VLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLC 413 (787)
Q Consensus 334 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 413 (787)
+..-|.-.|...|+...|.+-+++.++..+. +..+|..+...|-+.|..+.|.+.|++..+.... +-...|.-..-+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 3445666788889999999999888888754 6778888888888999999999999888765322 4556677777788
Q ss_pred hcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003913 414 KAEETELTESLMKEFVETGMKP-LMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEE 492 (787)
Q Consensus 414 ~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 492 (787)
..|++++|...|++....-.-+ -..||..+.-+..+.|+.+.|...|+..++..+-...+.-.+.....+.|++-.|..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 8889999999998888743222 246888888888889999999999998888666667777888888888999999999
Q ss_pred HHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 493 IFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 493 l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
.++.....+ .++..+.-..|..-.+.|+.+.|-++=..+.+
T Consensus 195 ~~~~~~~~~--~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 195 YLERYQQRG--GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHhcc--cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 999888886 47888888888888888988887777666654
No 81
>PF12854 PPR_1: PPR repeat
Probab=98.64 E-value=3e-08 Score=64.33 Aligned_cols=34 Identities=32% Similarity=0.579 Sum_probs=25.5
Q ss_pred CCCCCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHH
Q 003913 209 QGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMI 245 (787)
Q Consensus 209 ~g~~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~ 245 (787)
+|+.||.+|||+||.+|| +.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~C---k~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYC---KAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHH---HCCCHHHHHHHHHhCc
Confidence 367777777777777777 6777777777777773
No 82
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.63 E-value=0.00016 Score=77.56 Aligned_cols=308 Identities=9% Similarity=0.013 Sum_probs=181.4
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHHCCC-CCCHhHHHHH-HHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHH-H
Q 003913 180 FALATKLADYMGKERKFAKCRDIFDDIINQGR-VPSEMTFHIL-IVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPS-L 256 (787)
Q Consensus 180 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~-~pd~~ty~~l-i~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~-t 256 (787)
...|..+...+...|+.+.|.+.+....+... .++...-..+ ...+. ..|++++|.+++++..+. .|+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~---~~g~~~~A~~~~~~~l~~---~P~~~~a 79 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAW---IAGDLPKALALLEQLLDD---YPRDLLA 79 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHH---CCCcHHH
Confidence 44566666667677888887777666554321 1222222221 11222 579999999999998874 34433 3
Q ss_pred HHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003913 257 HNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLL 336 (787)
Q Consensus 257 ~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~ 336 (787)
+.. ...+... +.. .+....+.+.+.. .....| ...+...+....+...|++++|...+++..+.. +.+...+.
T Consensus 80 ~~~-~~~~~~~-~~~-~~~~~~~~~~l~~--~~~~~~-~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~ 152 (355)
T cd05804 80 LKL-HLGAFGL-GDF-SGMRDHVARVLPL--WAPENP-DYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVH 152 (355)
T ss_pred HHH-hHHHHHh-ccc-ccCchhHHHHHhc--cCcCCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHH
Confidence 332 1111111 000 0345555555544 112222 233344444577888999999999999998853 33456778
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCC-CC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCHHHH-H--HHH
Q 003913 337 SVLRVCAKEGDVEDAEKTWLRLLESDNG-IP--TPAFVYKMEAYAKIGEFMKSLEIFREMQERLG-SASVPAY-H--KII 409 (787)
Q Consensus 337 ~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~-~--~li 409 (787)
.+..++...|++++|...+++....... ++ ...|..+...+...|++++|..+|++...... .+..... + .++
T Consensus 153 ~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l 232 (355)
T cd05804 153 AVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLL 232 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHH
Confidence 8889999999999999999988876432 22 23456788899999999999999999864322 1222211 1 233
Q ss_pred HHHHhcCChHHHHHH--HHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---------CHHHHHH
Q 003913 410 ELLCKAEETELTESL--MKEFVETGM--KPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRP---------NRTIYGI 476 (787)
Q Consensus 410 ~~~~~~g~~~~A~~l--~~~m~~~g~--~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p---------~~~~~~~ 476 (787)
.-+...|....+.+. +........ ............++...|+.+.|..++..+...... .+...-.
T Consensus 233 ~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l 312 (355)
T cd05804 233 WRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLA 312 (355)
T ss_pred HHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHH
Confidence 333344433333332 111111111 111222235677788889999999999998762211 1222223
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhC
Q 003913 477 YLESLKNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 477 li~~~~~~g~~~~A~~l~~~m~~~ 500 (787)
..-++...|+.++|.+++......
T Consensus 313 ~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 313 EALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334456789999999999887654
No 83
>PF12854 PPR_1: PPR repeat
Probab=98.60 E-value=6.6e-08 Score=62.74 Aligned_cols=32 Identities=28% Similarity=0.673 Sum_probs=17.4
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 003913 466 KCRPNRTIYGIYLESLKNAGNIEKAEEIFNHM 497 (787)
Q Consensus 466 ~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 497 (787)
|+.||..|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34555555555555555555555555555555
No 84
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=0.00074 Score=71.79 Aligned_cols=87 Identities=13% Similarity=0.075 Sum_probs=50.2
Q ss_pred HHHHHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhcC
Q 003913 150 LAVHCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEM-TFHILIVAYLSA 228 (787)
Q Consensus 150 ~~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~-ty~~li~~~~~~ 228 (787)
-++++.+.+.+++|+.+.+.-... ...+++.+.. .-+..+.++.++|+..++ |..++.. +...--..+.
T Consensus 52 KvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEK-AYc~Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlY-- 121 (652)
T KOG2376|consen 52 KVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEK-AYCEYRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLY-- 121 (652)
T ss_pred hHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHH-HHHHHHcccHHHHHHHHh-----cccccchHHHHHHHHHHH--
Confidence 334777888888888554432211 0112221222 122347888888888887 3333332 4444444455
Q ss_pred CcCCCHHHHHHHHHHHHHh
Q 003913 229 PVQGCLDEACSIYNRMIQL 247 (787)
Q Consensus 229 ~~~g~~~~A~~l~~~m~~~ 247 (787)
|.|++++|+.+|+.+.+.
T Consensus 122 -rl~~ydealdiY~~L~kn 139 (652)
T KOG2376|consen 122 -RLERYDEALDIYQHLAKN 139 (652)
T ss_pred -HHhhHHHHHHHHHHHHhc
Confidence 788899999999888764
No 85
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.55 E-value=3.4e-05 Score=82.84 Aligned_cols=285 Identities=14% Similarity=0.139 Sum_probs=177.9
Q ss_pred hhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChH
Q 003913 305 HSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFM 384 (787)
Q Consensus 305 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 384 (787)
.+..+..+|.+|+.+++.++.... -..-|..+...|+..|+++.|+++|-+. ..++--|.+|.+.|+++
T Consensus 740 eaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHH
Confidence 344456678888888887776432 2234667778888999999999888542 24556788999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003913 385 KSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECL 464 (787)
Q Consensus 385 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 464 (787)
.|.++-++.. |....+..|-+-..-+-.+|++.+|.+++-.+. .|+ ..|.+|-+.|..++.+++..+-.
T Consensus 809 da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h 877 (1636)
T KOG3616|consen 809 DAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHH 877 (1636)
T ss_pred HHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhC
Confidence 9988866553 334456677777777888888888888775443 343 34678888888888877776542
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHH
Q 003913 465 EKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAW 544 (787)
Q Consensus 465 ~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~ 544 (787)
- ..-..|.-.+..-|-..|++..|++-|-+.. -|.+-++.|...+.|++|.++-+.- -| -+..
T Consensus 878 ~--d~l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriakte--gg--~n~~- 940 (1636)
T KOG3616|consen 878 G--DHLHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTE--GG--ANAE- 940 (1636)
T ss_pred h--hhhhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhcc--cc--ccHH-
Confidence 1 1112455666777888888888888775442 3556677788888888887765431 11 1111
Q ss_pred HHHHHH--HHhhccc-ccccccccCCchHHHHHHHHHHhhhhhhccchhhcceeEEEEEccCCcccHHHHHHHHHHchhh
Q 003913 545 MEKLDY--VLSLNRK-EVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIRFQFNENSRMHSVLRRYLYDQYHEW 621 (787)
Q Consensus 545 ~~~l~~--~~~l~~~-~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 621 (787)
++... +-+++.+ .++ . +. ..-....-+...+..+.++.|..+.++.....-+..++-++..+...|++
T Consensus 941 -k~v~flwaksiggdaavk-l----ln---k~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~ 1011 (1636)
T KOG3616|consen 941 -KHVAFLWAKSIGGDAAVK-L----LN---KHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKF 1011 (1636)
T ss_pred -HHHHHHHHHhhCcHHHHH-H----HH---hhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccch
Confidence 11111 1111110 000 0 00 01112222233344455555555555555556677788888888999999
Q ss_pred cCCCccccCCCCCcce
Q 003913 622 LHPSFKVSDGNDDIPY 637 (787)
Q Consensus 622 ~~A~~~~~~~~~~~p~ 637 (787)
++|...+-++.+...+
T Consensus 1012 edaskhyveaiklnty 1027 (1636)
T KOG3616|consen 1012 EDASKHYVEAIKLNTY 1027 (1636)
T ss_pred hhhhHhhHHHhhcccc
Confidence 9998877666655544
No 86
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.54 E-value=1.2e-05 Score=75.21 Aligned_cols=170 Identities=12% Similarity=0.046 Sum_probs=145.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003913 369 AFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYL 448 (787)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~ 448 (787)
+..-|.-+|...|+...|..-+++.++.... +..+|..+...|.+.|+.+.|.+-|++.+... +-+..+.|....-+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 4455788999999999999999999987322 56689999999999999999999999999853 335788999999999
Q ss_pred hcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHH
Q 003913 449 NLGMHDRLHLAFSECLE--KCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKA 526 (787)
Q Consensus 449 ~~g~~~~a~~~~~~m~~--~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A 526 (787)
..|++++|...|+.... ...--..+|..+.-+..+.|+.+.|.+.|++..+.. +-...+...+.....+.|++-.|
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d--p~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD--PQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC--cCCChHHHHHHHHHHhcccchHH
Confidence 99999999999999886 334446789999999999999999999999999985 55677888999999999999999
Q ss_pred HHHHHHHHHcCCccCHH
Q 003913 527 EKIYDLMCLKKYEIESA 543 (787)
Q Consensus 527 ~~~~~~m~~~g~~~~p~ 543 (787)
..+++.....+- .+.+
T Consensus 193 r~~~~~~~~~~~-~~A~ 208 (250)
T COG3063 193 RLYLERYQQRGG-AQAE 208 (250)
T ss_pred HHHHHHHHhccc-ccHH
Confidence 999999987553 4444
No 87
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=7.2e-05 Score=72.32 Aligned_cols=154 Identities=14% Similarity=0.073 Sum_probs=73.0
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-------------CH------
Q 003913 342 CAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSA-------------SV------ 402 (787)
Q Consensus 342 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-------------~~------ 402 (787)
..+.|+.++|.+-|....+.+--.....||.-+ +..+.|+.+.|++...++.++|++- |+
T Consensus 154 lykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt 232 (459)
T KOG4340|consen 154 LYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNT 232 (459)
T ss_pred eeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccch
Confidence 345566666666555555442222344454322 3334455566666666655554421 11
Q ss_pred ---------HHHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q 003913 403 ---------PAYHKIIELLCKAEETELTESLMKEFVE-TGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRT 472 (787)
Q Consensus 403 ---------~t~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~ 472 (787)
..+|.-...+.+.|+.+.|.+.+-.|-- ..-..|++|...+.-.=. .+++.+..+-+.-++...+-...
T Consensus 233 ~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPfP~E 311 (459)
T KOG4340|consen 233 LVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPFPPE 311 (459)
T ss_pred HHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCCChH
Confidence 1122222233455666666665555532 112334555544432211 12333333434444443334456
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHh
Q 003913 473 IYGIYLESLKNAGNIEKAEEIFNHM 497 (787)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~l~~~m 497 (787)
||..++-.||+..-++.|-.++.+-
T Consensus 312 TFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 312 TFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred HHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 6666666677766666666666543
No 88
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.52 E-value=8.5e-05 Score=79.50 Aligned_cols=441 Identities=12% Similarity=0.048 Sum_probs=225.6
Q ss_pred HHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHH
Q 003913 218 FHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDI 297 (787)
Q Consensus 218 y~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 297 (787)
|..++..|- .+++.+.+++.+.+....+-.++....--+.- +.. |+-++|....+.-+..++.. .+.
T Consensus 11 F~~~lk~yE----~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L--~~l------g~~~ea~~~vr~glr~d~~S-~vC 77 (700)
T KOG1156|consen 11 FRRALKCYE----TKQYKKGLKLIKQILKKFPEHGESLAMKGLTL--NCL------GKKEEAYELVRLGLRNDLKS-HVC 77 (700)
T ss_pred HHHHHHHHH----HHHHHhHHHHHHHHHHhCCccchhHHhccchh--hcc------cchHHHHHHHHHHhccCccc-chh
Confidence 444455553 56666666666666654333333332221111 111 45666666666555544431 122
Q ss_pred HHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003913 298 YSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEG-KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEA 376 (787)
Q Consensus 298 ~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 376 (787)
+..+ +-.+....++++|.+.|+..... .|| ...+.-+--.=++.|+++.......+..+..+. ....|.....+
T Consensus 78 wHv~--gl~~R~dK~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs 152 (700)
T KOG1156|consen 78 WHVL--GLLQRSDKKYDEAIKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVA 152 (700)
T ss_pred HHHH--HHHHhhhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHH
Confidence 2222 23344455566666666666553 333 344544444445666777666666666665432 34566777777
Q ss_pred HHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHHH------HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003913 377 YAKIGEFMKSLEIFREMQERL-GSASVPAYHKII------ELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLN 449 (787)
Q Consensus 377 ~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~li------~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~ 449 (787)
+.-.|+...|..+.++..+.. ..|+...|.... ......|..++|.+.+..-... +.-....-..-...+.+
T Consensus 153 ~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~k 231 (700)
T KOG1156|consen 153 QHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMK 231 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHH
Confidence 777777777777777766543 234544443332 2344556666666555443321 11111122333455667
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHhhhCCCCCCCHHHHHHH-HHHHHcCCCHHHHH
Q 003913 450 LGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAE-EIFNHMHSDQTIGVNTRSCNII-LSAYLSSGDFVKAE 527 (787)
Q Consensus 450 ~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~-~l~~~m~~~~~~~p~~~t~~~l-i~~~~~~g~~~~A~ 527 (787)
.+++++|..+|..++...+-|...|-.+..++.+--+.-++. .+|....+.- |-...-.-+ ++......-.+..-
T Consensus 232 l~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y---~r~e~p~Rlplsvl~~eel~~~vd 308 (700)
T KOG1156|consen 232 LGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY---PRHECPRRLPLSVLNGEELKEIVD 308 (700)
T ss_pred HhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC---cccccchhccHHHhCcchhHHHHH
Confidence 777777777777777655555555555555555333333333 5555544431 111110000 11111122233344
Q ss_pred HHHHHHHHcCCccCHH-------------HHHHHHHHHh--hcccccc--cccccCCchHHHHHHHH--HHhhhhhhccc
Q 003913 528 KIYDLMCLKKYEIESA-------------WMEKLDYVLS--LNRKEVK--KPVSLNLSSEQRENLIG--LLLGGLCIESD 588 (787)
Q Consensus 528 ~~~~~m~~~g~~~~p~-------------~~~~l~~~~~--l~~~~~~--~~~~~~l~~~~~~~~~~--~ll~~~~~~~~ 588 (787)
+++..+.++|++.--. .++.+...+. +...... ......-+| ...+|. -+...+-..|+
T Consensus 309 kyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~P--ttllWt~y~laqh~D~~g~ 386 (700)
T KOG1156|consen 309 KYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPP--TTLLWTLYFLAQHYDKLGD 386 (700)
T ss_pred HHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCc--hHHHHHHHHHHHHHHHccc
Confidence 5555556565432111 1122111111 1111000 000111122 244444 45556777899
Q ss_pred hhhcceeEE--EEEccCCcccHHHHHHHHHHchhhcCCCccccCCCCCcceEEeeec-cchHHHHHHhhccCcccccccc
Q 003913 589 EKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSFKVSDGNDDIPYKYSTIS-HPYFCFYADKFWPKGRLVIPKL 665 (787)
Q Consensus 589 ~~~a~~~~~--~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~p~~~~t~~-~~~~~~~~~g~~~~a~~~~~~m 665 (787)
++.|...+. +...|.-+..|..-+.|+.-.|.+++|...+.++.+.+.- -..++ ..+--.+.....++|.++..+.
T Consensus 387 ~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~a-DR~INsKcAKYmLrAn~i~eA~~~~skF 465 (700)
T KOG1156|consen 387 YEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTA-DRAINSKCAKYMLRANEIEEAEEVLSKF 465 (700)
T ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccch-hHHHHHHHHHHHHHccccHHHHHHHHHh
Confidence 999999888 7777888888989999999999999999998777666522 12233 2223345556667777665444
Q ss_pred hhhcC---C--hhHHHHHhhcCC
Q 003913 666 IHRWL---T--PRALAYWFMYGG 683 (787)
Q Consensus 666 i~~gl---~--P~~lay~~m~~g 683 (787)
-..|. . -+..+.|++..-
T Consensus 466 Tr~~~~~~~~L~~mqcmWf~~E~ 488 (700)
T KOG1156|consen 466 TREGFGAVNNLAEMQCMWFQLED 488 (700)
T ss_pred hhcccchhhhHHHhhhHHHhHhh
Confidence 43332 1 234556665543
No 89
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.52 E-value=3e-06 Score=86.38 Aligned_cols=244 Identities=14% Similarity=0.131 Sum_probs=157.1
Q ss_pred hhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003913 274 YYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEK 353 (787)
Q Consensus 274 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ 353 (787)
|++..+..-.+ .. ...+....-.-.....++...|+.+.+ ..++.... .|.......+...+....+-+.+..
T Consensus 15 G~Y~~~i~e~~-~~--~~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~ 87 (290)
T PF04733_consen 15 GNYQQCINEAS-LK--SFSPENKLERDFYQYRSYIALGQYDSV---LSEIKKSS-SPELQAVRLLAEYLSSPSDKESALE 87 (290)
T ss_dssp T-HHHHCHHHH-CH--TSTCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHH
T ss_pred hhHHHHHHHhh-cc--CCCchhHHHHHHHHHHHHHHcCChhHH---HHHhccCC-ChhHHHHHHHHHHHhCccchHHHHH
Confidence 56666664444 21 222222232233333566666665543 34443333 6666665555444443344455555
Q ss_pred HHHHHHhCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003913 354 TWLRLLESDNG-IPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETG 432 (787)
Q Consensus 354 ~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g 432 (787)
-+++....... .+..........|...|++++|++++..- .+.......+..|.+.++++.|.+.++.|.+.
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~- 160 (290)
T PF04733_consen 88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI- 160 (290)
T ss_dssp HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Confidence 44444333322 22333333445677789999999988753 36777778899999999999999999999874
Q ss_pred CCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHH
Q 003913 433 MKPLMPSYINLTNMYL----NLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTR 508 (787)
Q Consensus 433 ~~p~~~t~~~li~~~~----~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~ 508 (787)
..| .+...|..++. ....+.+|..+|+++.+.+.+++.+.|.+..++...|++++|.+++++....+ +-+..
T Consensus 161 -~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~--~~~~d 236 (290)
T PF04733_consen 161 -DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD--PNDPD 236 (290)
T ss_dssp -SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CCHHH
T ss_pred -CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--cCCHH
Confidence 334 33444444443 33469999999999988888999999999999999999999999999988875 45677
Q ss_pred HHHHHHHHHHcCCCH-HHHHHHHHHHHH
Q 003913 509 SCNIILSAYLSSGDF-VKAEKIYDLMCL 535 (787)
Q Consensus 509 t~~~li~~~~~~g~~-~~A~~~~~~m~~ 535 (787)
+...++......|+. +.+.+++.++..
T Consensus 237 ~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 237 TLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 888888888888888 778888888886
No 90
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.52 E-value=0.00059 Score=83.17 Aligned_cols=339 Identities=9% Similarity=-0.049 Sum_probs=208.7
Q ss_pred HHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCC-C----CCCHH-HHHHHHH
Q 003913 189 YMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGG-Y----QPRPS-LHNSLFR 262 (787)
Q Consensus 189 ~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g-~----~pd~~-t~~~ll~ 262 (787)
.+...|++..+..+++.++......+..........+. ..|++++|..++........ . .|... ....++.
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~---~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a 459 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQ---SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRA 459 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHH---HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHH
Confidence 34456777777777776632211112222222223333 57999999999988765310 0 11111 1122222
Q ss_pred HHHcCCCCCChhhHHHHHHHHHHHHHcCCccCH--HHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCC---CC--CHHHH
Q 003913 263 ALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQK--DIYSGLIWLHSYQDNIDKERISLLKKEMQQAGF---EE--GKEVL 335 (787)
Q Consensus 263 ~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~---~p--~~~t~ 335 (787)
...... |++++|...+++....-...+. ...........+...|++++|...+.+.....- .+ -..++
T Consensus 460 ~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~ 534 (903)
T PRK04841 460 QVAIND-----GDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSL 534 (903)
T ss_pred HHHHhC-----CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHH
Confidence 222222 6999999999988764222222 112223334667789999999999988764311 11 12345
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCC--CHHH
Q 003913 336 LSVLRVCAKEGDVEDAEKTWLRLLES----DNG--I-PTPAFVYKMEAYAKIGEFMKSLEIFREMQER--LGSA--SVPA 404 (787)
Q Consensus 336 ~~li~~~~~~g~~~~A~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p--~~~t 404 (787)
..+...+...|++++|...+++.... +.. + ....+..+...+...|++++|...+++.... ...+ ....
T Consensus 535 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 614 (903)
T PRK04841 535 LQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQC 614 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHH
Confidence 56677788999999999998876653 211 1 1233455666778889999999999887542 1112 2334
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCCHH--H--HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH----HHH
Q 003913 405 YHKIIELLCKAEETELTESLMKEFVETG--MKPLMP--S--YINLTNMYLNLGMHDRLHLAFSECLEKCRPNR----TIY 474 (787)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~--t--~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~----~~~ 474 (787)
+..+...+...|+.++|...+....... ...... . ....+..+...|+.+.|..++........... ..+
T Consensus 615 ~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~ 694 (903)
T PRK04841 615 LAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQW 694 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHH
Confidence 5556678889999999999998886521 111111 1 11123445668999999999877654111111 124
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhC----CCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 003913 475 GIYLESLKNAGNIEKAEEIFNHMHSD----QTIGV-NTRSCNIILSAYLSSGDFVKAEKIYDLMCLK 536 (787)
Q Consensus 475 ~~li~~~~~~g~~~~A~~l~~~m~~~----~~~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (787)
..+..++...|+.++|...+++.... | ..+ ...+...+..++.+.|+.++|...+.+..+.
T Consensus 695 ~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g-~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 695 RNIARAQILLGQFDEAEIILEELNENARSLR-LMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 56777888999999999999987653 2 112 2346777778899999999999999999863
No 91
>PLN02789 farnesyltranstransferase
Probab=98.45 E-value=0.00019 Score=74.33 Aligned_cols=240 Identities=12% Similarity=0.006 Sum_probs=172.9
Q ss_pred hhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcC-ChHHH
Q 003913 274 YYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKE-VLLSVLRVCAKEG-DVEDA 351 (787)
Q Consensus 274 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~-t~~~li~~~~~~g-~~~~A 351 (787)
+.+.+|...|+.+... .+..++|+.+..++.+ +.|+.. +|+.--.++.+.| +++++
T Consensus 34 ~~~~~a~~~~ra~l~~--------------------~e~serAL~lt~~aI~--lnP~~ytaW~~R~~iL~~L~~~l~ee 91 (320)
T PLN02789 34 PEFREAMDYFRAVYAS--------------------DERSPRALDLTADVIR--LNPGNYTVWHFRRLCLEALDADLEEE 91 (320)
T ss_pred HHHHHHHHHHHHHHHc--------------------CCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHHcchhHHHH
Confidence 3677777777766543 3456788888888776 356544 4555555556667 67999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003913 352 EKTWLRLLESDNGIPTPAFVYKMEAYAKIGEF--MKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFV 429 (787)
Q Consensus 352 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~ 429 (787)
...++++.+..++ +..+|+.....+.+.|+. ++++.+++++.+...+ |..+|+...-++...|++++|++.+++++
T Consensus 92 L~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I 169 (320)
T PLN02789 92 LDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLL 169 (320)
T ss_pred HHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 9999999988765 566787666566666653 6788899898877544 78899998889999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHhc---CC----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHhh
Q 003913 430 ETGMKPLMPSYINLTNMYLNL---GM----HDRLHLAFSECLEKCRPNRTIYGIYLESLKNA----GNIEKAEEIFNHMH 498 (787)
Q Consensus 430 ~~g~~p~~~t~~~li~~~~~~---g~----~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~----g~~~~A~~l~~~m~ 498 (787)
+.+ .-|..+|+.....+.+. |. .++......+++...+-|...|+.+...|... ++..+|.+.+.+..
T Consensus 170 ~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~ 248 (320)
T PLN02789 170 EED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVL 248 (320)
T ss_pred HHC-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhh
Confidence 876 34566666666555554 22 24566666677776788899999999988873 44567999998887
Q ss_pred hCCCCCCCHHHHHHHHHHHHcCC------------------CHHHHHHHHHHHHHcCCccCHHH
Q 003913 499 SDQTIGVNTRSCNIILSAYLSSG------------------DFVKAEKIYDLMCLKKYEIESAW 544 (787)
Q Consensus 499 ~~~~~~p~~~t~~~li~~~~~~g------------------~~~~A~~~~~~m~~~g~~~~p~~ 544 (787)
..+ +.+......|++.|+... ..++|.++++.+.+ .||-.
T Consensus 249 ~~~--~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~----~d~ir 306 (320)
T PLN02789 249 SKD--SNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEV----ADPMR 306 (320)
T ss_pred ccc--CCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHh----hCcHH
Confidence 764 457788888899888632 24678888887742 55543
No 92
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=0.00053 Score=72.22 Aligned_cols=369 Identities=13% Similarity=0.089 Sum_probs=230.8
Q ss_pred HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhcCCcC
Q 003913 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPS-EMTFHILIVAYLSAPVQ 231 (787)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd-~~ty~~li~~~~~~~~~ 231 (787)
+....|+++.|...|-..+.-. ++|.+.|+.-..+|++.|++++|++=-.+-++. .|+ .-.|+-.-.++. -.
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~---~l 83 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALF---GL 83 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHH---hc
Confidence 3447899999999999999886 679999999999999999999998876666654 455 357888888888 68
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHH----cCCccCHHHHHHHHH---
Q 003913 232 GCLDEACSIYNRMIQLGGYQPRP-SLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLT----SGLEIQKDIYSGLIW--- 303 (787)
Q Consensus 232 g~~~~A~~l~~~m~~~~g~~pd~-~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~----~~~~p~~~~~~~li~--- 303 (787)
|++++|+.-|.+=.+. .|+. ..++-+..+...... .++.-..-.++..+.. ....-+ ..|..++.
T Consensus 84 g~~~eA~~ay~~GL~~---d~~n~~L~~gl~~a~~~~~~---~~~~~~~p~~~~~l~~~p~t~~~~~~-~~~~~~l~~~~ 156 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLEK---DPSNKQLKTGLAQAYLEDYA---ADQLFTKPYFHEKLANLPLTNYSLSD-PAYVKILEIIQ 156 (539)
T ss_pred ccHHHHHHHHHHHhhc---CCchHHHHHhHHHhhhHHHH---hhhhccCcHHHHHhhcChhhhhhhcc-HHHHHHHHHhh
Confidence 9999999999998863 4543 444444444311000 0000000001111100 000000 11111110
Q ss_pred -----HhhhccCCCHHHHHHHHH-----HHHHcC-------CCC------------C----------HHHHHHHHHHHHh
Q 003913 304 -----LHSYQDNIDKERISLLKK-----EMQQAG-------FEE------------G----------KEVLLSVLRVCAK 344 (787)
Q Consensus 304 -----~~~~~~~g~~~~a~~l~~-----~m~~~g-------~~p------------~----------~~t~~~li~~~~~ 344 (787)
+..+.+......+...+. .+...| ..| | ..-..-+.++.-+
T Consensus 157 ~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaayk 236 (539)
T KOG0548|consen 157 KNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYK 236 (539)
T ss_pred cCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHH
Confidence 011111111111111110 000011 111 1 1123456667777
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH-------HHHHHHHhcCC
Q 003913 345 EGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYH-------KIIELLCKAEE 417 (787)
Q Consensus 345 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-------~li~~~~~~g~ 417 (787)
..+++.|.+-+....+.. -+..-++....+|...|++.++...-+.-.+.|-. ...-|+ .+..+|.+.++
T Consensus 237 kk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~ 313 (539)
T KOG0548|consen 237 KKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKRED 313 (539)
T ss_pred hhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHh
Confidence 888888888888877765 25555666777888888877777666665554322 122222 23346666778
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHH-------------------------HHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q 003913 418 TELTESLMKEFVETGMKPLMPSYI-------------------------NLTNMYLNLGMHDRLHLAFSECLEKCRPNRT 472 (787)
Q Consensus 418 ~~~A~~l~~~m~~~g~~p~~~t~~-------------------------~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~ 472 (787)
++.|...|.+.+.....|+..+-. .=.+.+.+.|++..|...|.++++..+-|..
T Consensus 314 ~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~ 393 (539)
T KOG0548|consen 314 YEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR 393 (539)
T ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH
Confidence 888888888877655455432211 1145677888999999999998887788888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHH
Q 003913 473 IYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAW 544 (787)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~ 544 (787)
.|....-+|.+.|.+..|++-.+..++.. ++....|.-=..++....+|++|++.|++-++ .+|+.
T Consensus 394 lYsNRAac~~kL~~~~~aL~Da~~~ieL~--p~~~kgy~RKg~al~~mk~ydkAleay~eale----~dp~~ 459 (539)
T KOG0548|consen 394 LYSNRAACYLKLGEYPEALKDAKKCIELD--PNFIKAYLRKGAALRAMKEYDKALEAYQEALE----LDPSN 459 (539)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCchh
Confidence 99999999999999999999888888875 45556666666666677788888888888776 66764
No 93
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=0.00095 Score=66.34 Aligned_cols=349 Identities=11% Similarity=0.037 Sum_probs=176.2
Q ss_pred HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCC
Q 003913 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQG 232 (787)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g 232 (787)
+.-+.|++++|+.++..+.... .++...+-.|...+.-.|.+.+|..+-...+ +....+-|+--++. +.+
T Consensus 66 C~fhLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~------k~pL~~RLlfhlah--kln 135 (557)
T KOG3785|consen 66 CYFHLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQYIEAKSIAEKAP------KTPLCIRLLFHLAH--KLN 135 (557)
T ss_pred HHHhhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHHHHHHHHHHhhCC------CChHHHHHHHHHHH--HhC
Confidence 4457899999999999888765 5566666667666667788888887766543 33444444444443 667
Q ss_pred CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCC
Q 003913 233 CLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNID 312 (787)
Q Consensus 233 ~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~ 312 (787)
+-++-..+-..+... .-|..+..++ -|.+. ++.+|.+++...+..+.. -...+.. ++.+|.+..-
T Consensus 136 dEk~~~~fh~~LqD~---~EdqLSLAsv--hYmR~-------HYQeAIdvYkrvL~dn~e--y~alNVy-~ALCyyKlDY 200 (557)
T KOG3785|consen 136 DEKRILTFHSSLQDT---LEDQLSLASV--HYMRM-------HYQEAIDVYKRVLQDNPE--YIALNVY-MALCYYKLDY 200 (557)
T ss_pred cHHHHHHHHHHHhhh---HHHHHhHHHH--HHHHH-------HHHHHHHHHHHHHhcChh--hhhhHHH-HHHHHHhcch
Confidence 766666655555431 1222221111 13332 788888888887655422 1111111 1234455555
Q ss_pred HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh--cCChHHHHH------------HHHHHHhCCC------------CC
Q 003913 313 KERISLLKKEMQQAGFEEG-KEVLLSVLRVCAK--EGDVEDAEK------------TWLRLLESDN------------GI 365 (787)
Q Consensus 313 ~~~a~~l~~~m~~~g~~p~-~~t~~~li~~~~~--~g~~~~A~~------------~~~~m~~~~~------------~~ 365 (787)
++-+.++++--.+. -|| ....|.......+ .|+..+++. ..+.+.+.++ -|
T Consensus 201 ydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP 278 (557)
T KOG3785|consen 201 YDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLP 278 (557)
T ss_pred hhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhch
Confidence 55555665554442 233 2333333322222 222222111 1111111110 00
Q ss_pred -----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH-----HHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 003913 366 -----PTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPA-----YHKIIELLCKAEETELTESLMKEFVETGMKP 435 (787)
Q Consensus 366 -----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-----~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 435 (787)
-+.+--.|+--|.+.+++++|..+.+++.-. .|-... +.++..-......+.-|.+.|+..-.++..-
T Consensus 279 ~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ec 356 (557)
T KOG3785|consen 279 SLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALEC 356 (557)
T ss_pred HHHhhChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccccc
Confidence 0011122444566777777777766554311 111111 1111111112223444555555544444433
Q ss_pred CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHH
Q 003913 436 LM-PSYINLTNMYLNLGMHDRLHLAFSECLEKC-RPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNII 513 (787)
Q Consensus 436 ~~-~t~~~li~~~~~~g~~~~a~~~~~~m~~~~-~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~l 513 (787)
|. .---++..++.-..++++.+..+..+..-+ ..|...+ .+..+++..|++.+|+++|-.+.... + .|..+|.++
T Consensus 357 DTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~-i-kn~~~Y~s~ 433 (557)
T KOG3785|consen 357 DTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPE-I-KNKILYKSM 433 (557)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChh-h-hhhHHHHHH
Confidence 32 223344455555566677766666665522 3333333 35677777788888888877665543 3 245555554
Q ss_pred H-HHHHcCCCHHHHHHHHHHH
Q 003913 514 L-SAYLSSGDFVKAEKIYDLM 533 (787)
Q Consensus 514 i-~~~~~~g~~~~A~~~~~~m 533 (787)
+ ++|.++++++-|-.++-++
T Consensus 434 LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 434 LARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HHHHHHhcCCchHHHHHHHhc
Confidence 4 5677777777776655544
No 94
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.39 E-value=0.00015 Score=83.81 Aligned_cols=223 Identities=13% Similarity=0.166 Sum_probs=152.2
Q ss_pred HHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 003913 297 IYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEE-----GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFV 371 (787)
Q Consensus 297 ~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p-----~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 371 (787)
...|+-.|......++.++|.+++++.... +.+ -...|.++++.-..-|.-+...++|+++.+.. . .-.+|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d-~~~V~~ 1534 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-D-AYTVHL 1534 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-c-hHHHHH
Confidence 344444445666777788888888777653 222 12356666666666777777788888877653 1 245677
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHH
Q 003913 372 YKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPL---MPSYINLTNMYL 448 (787)
Q Consensus 372 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~li~~~~ 448 (787)
.|...|.+.++.++|-++|+.|.++ ..-....|...+..+.+..+-+.|..++.+.++. -|- .....-.+..-.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHh
Confidence 7888888888888888888888765 3335667888888888888888888888887763 332 334445556666
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCH--HHHHHHHHHHHcCCCHHHH
Q 003913 449 NLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNT--RSCNIILSAYLSSGDFVKA 526 (787)
Q Consensus 449 ~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~--~t~~~li~~~~~~g~~~~A 526 (787)
+.|+.+.++.+|+..+...+.-...|+.+|++=.++|+.+.+..+|++....+ ++|-. ..|...+.-=..+|+-+.+
T Consensus 1612 k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~-l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK-LSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC-CChhHhHHHHHHHHHHHHhcCchhhH
Confidence 77888888888888877666677788888888888888888888888888877 54432 3444444444445554433
No 95
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.36 E-value=0.0036 Score=66.01 Aligned_cols=78 Identities=14% Similarity=0.251 Sum_probs=47.7
Q ss_pred ccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCC-CHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHH
Q 003913 177 RFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVP-SEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPS 255 (787)
Q Consensus 177 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p-d~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~ 255 (787)
+.|+.+|+.||.-+... .++++++.++++... .| ....|..-|.+-. +..+++.++.+|.+.... .-+..
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~--FP~s~r~W~~yi~~El---~skdfe~VEkLF~RCLvk---vLnlD 87 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV--FPSSPRAWKLYIEREL---ASKDFESVEKLFSRCLVK---VLNLD 87 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHH---HhhhHHHHHHHHHHHHHH---HhhHh
Confidence 45677777777765444 777777777777653 23 3355666677666 567777777777776653 23344
Q ss_pred HHHHHHHH
Q 003913 256 LHNSLFRA 263 (787)
Q Consensus 256 t~~~ll~~ 263 (787)
.|..-|.-
T Consensus 88 LW~lYl~Y 95 (656)
T KOG1914|consen 88 LWKLYLSY 95 (656)
T ss_pred HHHHHHHH
Confidence 44444443
No 96
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=0.0031 Score=67.28 Aligned_cols=351 Identities=13% Similarity=0.098 Sum_probs=215.0
Q ss_pred HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCC
Q 003913 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQG 232 (787)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g 232 (787)
+.-+.+..++|+..+.-.- +.+..+...-...+.|.|++++|.++|+.+.+.+. ..+...+.+-+. ..
T Consensus 88 c~Yrlnk~Dealk~~~~~~-----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~----dd~d~~~r~nl~--a~- 155 (652)
T KOG2376|consen 88 CEYRLNKLDEALKTLKGLD-----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS----DDQDEERRANLL--AV- 155 (652)
T ss_pred HHHHcccHHHHHHHHhccc-----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC----chHHHHHHHHHH--HH-
Confidence 3448899999999888222 22444566666778899999999999999988743 344444433331 01
Q ss_pred CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCC-------------ccCHHHHH
Q 003913 233 CLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGL-------------EIQKDIYS 299 (787)
Q Consensus 233 ~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~-------------~p~~~~~~ 299 (787)
..+... ..|... ...| ..+|..+.+..|...+ .|++.+|+++++...+.+. .-..++.
T Consensus 156 --~a~l~~-~~~q~v-~~v~-e~syel~yN~Ac~~i~---~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~I- 226 (652)
T KOG2376|consen 156 --AAALQV-QLLQSV-PEVP-EDSYELLYNTACILIE---NGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPI- 226 (652)
T ss_pred --HHhhhH-HHHHhc-cCCC-cchHHHHHHHHHHHHh---cccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHH-
Confidence 111111 123322 3444 3456666554443221 1799999999998833221 1111111
Q ss_pred HHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCH---HH-HHHHHHHHHhcCC----------------------------
Q 003913 300 GLIWLHSYQDNIDKERISLLKKEMQQAGFEEGK---EV-LLSVLRVCAKEGD---------------------------- 347 (787)
Q Consensus 300 ~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~---~t-~~~li~~~~~~g~---------------------------- 347 (787)
.+-+.+.+...|+.++|..++....+... +|. .+ -|.|+.+ ..-.+
T Consensus 227 rvQlayVlQ~~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~ 304 (652)
T KOG2376|consen 227 RVQLAYVLQLQGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKK 304 (652)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 12235788899999999999999888643 232 12 2222221 11111
Q ss_pred ------------------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--cCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003913 348 ------------------VEDAEKTWLRLLESDNGIPTPAFVYKMEAYAK--IGEFMKSLEIFREMQERLGSASVPAYHK 407 (787)
Q Consensus 348 ------------------~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 407 (787)
.+.+.++-... .+..|. ..+.+++....+ .....+|.+++...-+....-..+.--.
T Consensus 305 qk~~i~~N~~lL~l~tnk~~q~r~~~a~l--p~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~ 381 (652)
T KOG2376|consen 305 QKQAIYRNNALLALFTNKMDQVRELSASL--PGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLL 381 (652)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhC--CccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHH
Confidence 11111111100 112232 344444443333 2357788888887766532223456667
Q ss_pred HHHHHHhcCChHHHHHHHH--------HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---cCCCCHHH---
Q 003913 408 IIELLCKAEETELTESLMK--------EFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE---KCRPNRTI--- 473 (787)
Q Consensus 408 li~~~~~~g~~~~A~~l~~--------~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~---~~~p~~~~--- 473 (787)
++......|+++.|.+++. .+.+.+..| .+...+...|.+.+.-+.|..++.+... ...+....
T Consensus 382 ~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~ 459 (652)
T KOG2376|consen 382 RAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLS 459 (652)
T ss_pred HHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHh
Confidence 7888999999999999999 666655555 4556677778888877777777777664 22222233
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003913 474 -YGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (787)
Q Consensus 474 -~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (787)
+.-+...-.+.|+-++|..+++++.+.+ ++|..+...++.+|++. +.+.|+.+-..+.
T Consensus 460 ~~~~aa~f~lr~G~~~ea~s~leel~k~n--~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 460 LMREAAEFKLRHGNEEEASSLLEELVKFN--PNDTDLLVQLVTAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred HHHHHhHHHHhcCchHHHHHHHHHHHHhC--CchHHHHHHHHHHHHhc-CHHHHHHHhhcCC
Confidence 3334444457899999999999999974 78999999999999986 5788888877665
No 97
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.34 E-value=3.3e-05 Score=78.78 Aligned_cols=154 Identities=18% Similarity=0.130 Sum_probs=81.4
Q ss_pred HHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-
Q 003913 301 LIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAK- 379 (787)
Q Consensus 301 li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~- 379 (787)
++.+..+...|++++|++++..- .+.......+..|.+.++++.|.+.++.|.+.+ .| .+...|..++..
T Consensus 106 ~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l 176 (290)
T PF04733_consen 106 LLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNL 176 (290)
T ss_dssp HHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHH
Confidence 33344555566666666655421 244555556666667777777777777766554 22 223334333332
Q ss_pred ---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HH
Q 003913 380 ---IGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMH-DR 455 (787)
Q Consensus 380 ---~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~-~~ 455 (787)
..++.+|..+|+++.++ ..++..+.|.+..++...|++++|.+++.+..+.. +-+..|...++.+....|+. +.
T Consensus 177 ~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~ 254 (290)
T PF04733_consen 177 ATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEA 254 (290)
T ss_dssp HHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHH
T ss_pred HhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhH
Confidence 23566666666666544 44566666666666666666666666666655432 22345555555555555555 44
Q ss_pred HHHHHHHHHh
Q 003913 456 LHLAFSECLE 465 (787)
Q Consensus 456 a~~~~~~m~~ 465 (787)
+.+.+.++..
T Consensus 255 ~~~~l~qL~~ 264 (290)
T PF04733_consen 255 AERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHCHH
T ss_pred HHHHHHHHHH
Confidence 4445554443
No 98
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=0.0013 Score=73.80 Aligned_cols=322 Identities=13% Similarity=0.079 Sum_probs=198.1
Q ss_pred cCCcchHHHHHHHhhcCChhHHHHHHHHHHhcC-CCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHH
Q 003913 142 LRQEDGTYLAVHCMRIRENETGFRVYEWMMQQH-WYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHI 220 (787)
Q Consensus 142 ~~p~~~t~~~~~~~~~~~~~~A~~~~~~m~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~ 220 (787)
-.|+.++.++.++...+-+.+-.++++.++-.+ .+.-+...-|.||-...| -+..+..++.+++-.... |+..
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa-~~ia---- 1055 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDA-PDIA---- 1055 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCc-hhHH----
Confidence 356777777777778888888888888776443 233444455555544434 344556666666655421 2221
Q ss_pred HHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHH
Q 003913 221 LIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSG 300 (787)
Q Consensus 221 li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 300 (787)
.... .++-+++|+.+|++. ..+....+.+|.-. +.++.|.++-++.. .+.+++.
T Consensus 1056 --~iai---~~~LyEEAF~ifkkf------~~n~~A~~VLie~i---------~~ldRA~efAe~~n------~p~vWsq 1109 (1666)
T KOG0985|consen 1056 --EIAI---ENQLYEEAFAIFKKF------DMNVSAIQVLIENI---------GSLDRAYEFAERCN------EPAVWSQ 1109 (1666)
T ss_pred --HHHh---hhhHHHHHHHHHHHh------cccHHHHHHHHHHh---------hhHHHHHHHHHhhC------ChHHHHH
Confidence 1122 356678888888754 23445555555543 35677766655543 2455666
Q ss_pred HHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 003913 301 LIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKI 380 (787)
Q Consensus 301 li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 380 (787)
+. .+..+.|...+|.+-|-+. -|...|.-++..+.+.|.+++-.+.+....++.-+|.+. +.||-+|++.
T Consensus 1110 la--kAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt 1179 (1666)
T KOG0985|consen 1110 LA--KAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKT 1179 (1666)
T ss_pred HH--HHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHh
Confidence 65 5556666667766655321 256678888888888888888888877666666555443 4678888888
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003913 381 GEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAF 460 (787)
Q Consensus 381 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~ 460 (787)
+++.+-.+++ ..||......+..-|...|.++.|.-+|...- -|..|...+...|.+..|...-
T Consensus 1180 ~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~AVD~a 1243 (1666)
T KOG0985|consen 1180 NRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQGAVDAA 1243 (1666)
T ss_pred chHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHh
Confidence 8877655543 23677777777777778888877776665432 3555666666666666665544
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 003913 461 SECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDL 532 (787)
Q Consensus 461 ~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~ 532 (787)
++ ..+..||--+-.+|...+.+.-| +|...+ +-....-..-|+.-|-..|-+++-+.+++.
T Consensus 1244 RK-----Ans~ktWK~VcfaCvd~~EFrlA-----QiCGL~-iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1244 RK-----ANSTKTWKEVCFACVDKEEFRLA-----QICGLN-IIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred hh-----ccchhHHHHHHHHHhchhhhhHH-----HhcCce-EEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 43 34566777777777666555433 333333 223444556667777777777777766653
No 99
>PLN02789 farnesyltranstransferase
Probab=98.32 E-value=7e-05 Score=77.46 Aligned_cols=206 Identities=13% Similarity=0.014 Sum_probs=133.1
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--
Q 003913 376 AYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAE-ETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGM-- 452 (787)
Q Consensus 376 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~-- 452 (787)
.+.+.++.++|+.+..++++.... +..+|+.--.++...| .+++++..++++.+.. +-+..+|+.....+.+.|.
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchh
Confidence 334445666666666666654211 3334554445555555 4567777777776643 2344455555555555554
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcC---CCH----HH
Q 003913 453 HDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSS---GDF----VK 525 (787)
Q Consensus 453 ~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~---g~~----~~ 525 (787)
.+++..+++.+++..+.|..+|+...-.+.+.|++++|++.++++++.+ +-|...|+.....+.+. |.. ++
T Consensus 124 ~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d--~~N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 124 ANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED--VRNNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC--CCchhHHHHHHHHHHhccccccccccHHH
Confidence 2567778888887778889999999999999999999999999999886 45778888777666554 222 45
Q ss_pred HHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhhhhcc----chhhcceeEE--EE
Q 003913 526 AEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIES----DEKRKRHMIR--FQ 599 (787)
Q Consensus 526 A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~~--~~ 599 (787)
++.+..+++. .+|+ +...|+-+.+.+...+ ....+...+. ..
T Consensus 202 el~y~~~aI~----~~P~----------------------------N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 202 ELKYTIDAIL----ANPR----------------------------NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HHHHHHHHHH----hCCC----------------------------CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 6666666665 4554 2566766666665532 2223333333 45
Q ss_pred EccCCcccHHHHHHHHHH
Q 003913 600 FNENSRMHSVLRRYLYDQ 617 (787)
Q Consensus 600 ~~p~~~~~~~~l~~~y~~ 617 (787)
.+|.++.+...|+++|+.
T Consensus 250 ~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 250 KDSNHVFALSDLLDLLCE 267 (320)
T ss_pred ccCCcHHHHHHHHHHHHh
Confidence 678888888889999985
No 100
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.31 E-value=9.3e-05 Score=74.06 Aligned_cols=186 Identities=13% Similarity=-0.009 Sum_probs=123.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHH
Q 003913 331 GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNG-I-PTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASV--PAYH 406 (787)
Q Consensus 331 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~ 406 (787)
....+..+...+.+.|++++|...++++.+..+. | ...++..+..+|.+.|++++|...|+++.+....... .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 4566777778888889999999888888776532 1 1245677788888889999999999888765321111 1344
Q ss_pred HHHHHHHhc--------CChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 003913 407 KIIELLCKA--------EETELTESLMKEFVETGMKPLM-PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIY 477 (787)
Q Consensus 407 ~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~l 477 (787)
.+..++... |+.++|.+.++++.+. .|+. ..+..+..... .... . ......+
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~~------~-------~~~~~~~ 172 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRNR------L-------AGKELYV 172 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHHH------H-------HHHHHHH
Confidence 444555543 6677788888887764 2332 22211111100 0000 0 0112245
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 478 LESLKNAGNIEKAEEIFNHMHSDQTI-GVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 478 i~~~~~~g~~~~A~~l~~~m~~~~~~-~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
...|.+.|++++|...+++..+...- +.....+..+..++.+.|++++|..+++.+..
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 67788999999999999999886311 12357889999999999999999999998875
No 101
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.31 E-value=0.0021 Score=70.69 Aligned_cols=318 Identities=13% Similarity=0.079 Sum_probs=191.4
Q ss_pred HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHC-CC--------CCCHhHHHHHHH
Q 003913 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQ-GR--------VPSEMTFHILIV 223 (787)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-g~--------~pd~~ty~~li~ 223 (787)
.+...|+.+.|.+-...+.. ..+|..+..++.+..+++-|.--+-.|... |. .|+.. .+-..
T Consensus 737 fyvtiG~MD~AfksI~~IkS-------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~--eakvA 807 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIKS-------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEED--EAKVA 807 (1416)
T ss_pred EEEEeccHHHHHHHHHHHhh-------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcch--hhHHH
Confidence 34567899999887776643 468999999999999999998888777642 11 22211 12222
Q ss_pred HHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHH
Q 003913 224 AYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIW 303 (787)
Q Consensus 224 ~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 303 (787)
.++. ..|.+++|+.+|++.++.+ |++-+.+.. |++++|.++-+.--+.-+ ..||-...
T Consensus 808 vLAi--eLgMlEeA~~lYr~ckR~D-----------LlNKlyQs~-----g~w~eA~eiAE~~DRiHL---r~Tyy~yA- 865 (1416)
T KOG3617|consen 808 VLAI--ELGMLEEALILYRQCKRYD-----------LLNKLYQSQ-----GMWSEAFEIAETKDRIHL---RNTYYNYA- 865 (1416)
T ss_pred HHHH--HHhhHHHHHHHHHHHHHHH-----------HHHHHHHhc-----ccHHHHHHHHhhccceeh---hhhHHHHH-
Confidence 2222 5799999999999988732 555566554 589999988765433222 23333322
Q ss_pred HhhhccCCCHHHHHHHHHHH----------HHcCC---------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 003913 304 LHSYQDNIDKERISLLKKEM----------QQAGF---------EEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNG 364 (787)
Q Consensus 304 ~~~~~~~g~~~~a~~l~~~m----------~~~g~---------~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 364 (787)
.-+...+|.+.|++.|++. ..... .-|...|.--..-+-..|+++.|..+|....
T Consensus 866 -~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~----- 939 (1416)
T KOG3617|consen 866 -KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK----- 939 (1416)
T ss_pred -HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh-----
Confidence 3344556777777777632 21110 1122222222222335677777777776543
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003913 365 IPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLT 444 (787)
Q Consensus 365 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li 444 (787)
-|-+++...|-.|+.++|-++-++-. |....-.|.+.|-..|++.+|...|.+.+. +...|
T Consensus 940 ----D~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAI 1000 (1416)
T KOG3617|consen 940 ----DYFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAI 1000 (1416)
T ss_pred ----hhhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHH
Confidence 35567788888888888887766432 556666788888888888888888877653 33333
Q ss_pred HHHHhcC---------------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--------hhhCC
Q 003913 445 NMYLNLG---------------MHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNH--------MHSDQ 501 (787)
Q Consensus 445 ~~~~~~g---------------~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~--------m~~~~ 501 (787)
+.|-..+ +.-.|-+.|++.- .-..-.+..|-++|.+.+|+++--+ ++.++
T Consensus 1001 RlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g-------~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~D 1073 (1416)
T KOG3617|consen 1001 RLCKENDMKDRLANLALMSGGSDLVSAARYYEELG-------GYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKD 1073 (1416)
T ss_pred HHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcc-------hhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHh
Confidence 3322222 2223333443321 0112335567778888777765211 11111
Q ss_pred CC--CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003913 502 TI--GVNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (787)
Q Consensus 502 ~~--~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (787)
+ ..|+...+.-.+-++.+.++++|..++-...
T Consensus 1074 -Ld~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1074 -LDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred -cCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 1 2366677777777888888888888876554
No 102
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=0.00047 Score=66.89 Aligned_cols=333 Identities=11% Similarity=0.033 Sum_probs=215.8
Q ss_pred cCCcchHHHHHHHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHH
Q 003913 142 LRQEDGTYLAVHCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHIL 221 (787)
Q Consensus 142 ~~p~~~t~~~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~l 221 (787)
++..++|-++..+.+-.+++.|.+++..-.++. +.+....+.|..+|-...++..|-..++++-.. .|...-|..-
T Consensus 8 i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY 83 (459)
T KOG4340|consen 8 IPEGEFTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLY 83 (459)
T ss_pred CCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHH
Confidence 444456666666778889999999998887775 447777788888899999999999999998775 4555555432
Q ss_pred H-HHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHH
Q 003913 222 I-VAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSG 300 (787)
Q Consensus 222 i-~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 300 (787)
- ..+. +.+.+.+|+.+...|.. .|+...-..-+.+..+-.. +++..+..++++....| +.++..-
T Consensus 84 ~AQSLY---~A~i~ADALrV~~~~~D----~~~L~~~~lqLqaAIkYse----~Dl~g~rsLveQlp~en---~Ad~~in 149 (459)
T KOG4340|consen 84 QAQSLY---KACIYADALRVAFLLLD----NPALHSRVLQLQAAIKYSE----GDLPGSRSLVEQLPSEN---EADGQIN 149 (459)
T ss_pred HHHHHH---HhcccHHHHHHHHHhcC----CHHHHHHHHHHHHHHhccc----ccCcchHHHHHhccCCC---ccchhcc
Confidence 2 2233 68889999999988864 2444333333333332221 57777888887765322 1222222
Q ss_pred HHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-------------CCH
Q 003913 301 LIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNG-------------IPT 367 (787)
Q Consensus 301 li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-------------~~~ 367 (787)
.. ....+.|+.+.|.+-|+...+-|---....|+..+.. .+.|+.+.|.+...+++++|++ ||+
T Consensus 150 ~g--CllykegqyEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv 226 (459)
T KOG4340|consen 150 LG--CLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV 226 (459)
T ss_pred ch--heeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch
Confidence 22 4567889999999999888775433345677766544 4678899999999999888753 222
Q ss_pred ---------------HHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003913 368 ---------------PAFVYKMEAYAKIGEFMKSLEIFREMQER-LGSASVPAYHKIIELLCKAEETELTESLMKEFVET 431 (787)
Q Consensus 368 ---------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 431 (787)
..+|.-...+.+.|+.+.|.+.+..|.-+ ....|.+|...+.-.- -.+++.+..+-+..+.+.
T Consensus 227 rsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~ 305 (459)
T KOG4340|consen 227 RSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQ 305 (459)
T ss_pred hcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhc
Confidence 12233334467789999999999988622 2345777776554222 234566666666666664
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHhh
Q 003913 432 GMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE--KCRPNRTIYGIYLESLK-NAGNIEKAEEIFNHMH 498 (787)
Q Consensus 432 g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~--~~~p~~~~~~~li~~~~-~~g~~~~A~~l~~~m~ 498 (787)
. +--..||..++-.||+..-++.|-.++.+-.. -.-.+...|+. ++++. ..-..++|++-++.+.
T Consensus 306 n-PfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~L-LdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 306 N-PFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDL-LDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred C-CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHH-HHHHHhCCCCHHHHHHHHHHHH
Confidence 3 23468999999999999999999888876322 01123334443 33333 2345666666555543
No 103
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.26 E-value=2.2e-05 Score=82.96 Aligned_cols=214 Identities=10% Similarity=0.028 Sum_probs=144.3
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003913 343 AKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTE 422 (787)
Q Consensus 343 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 422 (787)
.+.|++.+|.-.|+...+.++. +..+|-.|.......++-..|+..+++..+.... |....-+|.-.|...|.-.+|+
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHHH
Confidence 4667787888788777777654 6777777777777777777788877777765322 5666667777777777777777
Q ss_pred HHHHHHHHcCCC-----C---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003913 423 SLMKEFVETGMK-----P---LMPSYINLTNMYLNLGMHDRLHLAFSECLE--KCRPNRTIYGIYLESLKNAGNIEKAEE 492 (787)
Q Consensus 423 ~l~~~m~~~g~~-----p---~~~t~~~li~~~~~~g~~~~a~~~~~~m~~--~~~p~~~~~~~li~~~~~~g~~~~A~~ 492 (787)
..++.-+....+ + +...-.. ..+.....+....++|-++.. +..+|..++..|.-.|--.|.+++|..
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 777766543210 0 0000000 111222234455666666655 334788888888888888888888888
Q ss_pred HHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCCchHHH
Q 003913 493 IFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQR 572 (787)
Q Consensus 493 l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~ 572 (787)
.|+..+... |-|...||.|...++...+.++|+..|++.++ +.|..
T Consensus 452 cf~~AL~v~--Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq----LqP~y---------------------------- 497 (579)
T KOG1125|consen 452 CFEAALQVK--PNDYLLWNRLGATLANGNRSEEAISAYNRALQ----LQPGY---------------------------- 497 (579)
T ss_pred HHHHHHhcC--CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh----cCCCe----------------------------
Confidence 888888764 55678888888888888888888888888886 66653
Q ss_pred HHHHHHHhhhhhhccchhhcce
Q 003913 573 ENLIGLLLGGLCIESDEKRKRH 594 (787)
Q Consensus 573 ~~~~~~ll~~~~~~~~~~~a~~ 594 (787)
+.++..|.-.|...|.+++|..
T Consensus 498 VR~RyNlgIS~mNlG~ykEA~~ 519 (579)
T KOG1125|consen 498 VRVRYNLGISCMNLGAYKEAVK 519 (579)
T ss_pred eeeehhhhhhhhhhhhHHHHHH
Confidence 4455556666666666665554
No 104
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.25 E-value=0.017 Score=64.85 Aligned_cols=226 Identities=14% Similarity=0.094 Sum_probs=135.7
Q ss_pred hcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHH
Q 003913 156 RIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLD 235 (787)
Q Consensus 156 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~ 235 (787)
..+++..|++..+.+.++.+-.+-..++.+++ +.|.|+.++|..+++.....+.. |..|..++-..|- +.++.+
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLs--l~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~---d~~~~d 94 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALS--LFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYR---DLGKLD 94 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHH--HHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHH---HHhhhh
Confidence 55778888888888877642222333333333 45788889999888887766555 7888888888887 788999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHH-HhhhccCC---
Q 003913 236 EACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIW-LHSYQDNI--- 311 (787)
Q Consensus 236 ~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~-~~~~~~~g--- 311 (787)
+|..+|++..+ ..|+......+..++++. +.+.+-.++=-+|-+ ..|...-|-|-+. +......+
T Consensus 95 ~~~~~Ye~~~~---~~P~eell~~lFmayvR~------~~yk~qQkaa~~LyK--~~pk~~yyfWsV~Slilqs~~~~~~ 163 (932)
T KOG2053|consen 95 EAVHLYERANQ---KYPSEELLYHLFMAYVRE------KSYKKQQKAALQLYK--NFPKRAYYFWSVISLILQSIFSENE 163 (932)
T ss_pred HHHHHHHHHHh---hCCcHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH--hCCcccchHHHHHHHHHHhccCCcc
Confidence 99999998886 357766666677777765 344433322222222 1222222222221 11111111
Q ss_pred -----CHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHH-HHHhCCCCCCHHHHHHHHHHHHHcCChH
Q 003913 312 -----DKERISLLKKEMQQAG-FEEGKEVLLSVLRVCAKEGDVEDAEKTWL-RLLESDNGIPTPAFVYKMEAYAKIGEFM 384 (787)
Q Consensus 312 -----~~~~a~~l~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~A~~~~~-~m~~~~~~~~~~~~~~li~~~~~~g~~~ 384 (787)
-..-|.+.++.+.+.+ -.-+..-...-+..+-..|++++|..++. ...+.-...+...-+--++.+...+++.
T Consensus 164 ~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~ 243 (932)
T KOG2053|consen 164 LLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQ 243 (932)
T ss_pred cccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChH
Confidence 1234556666666554 11122222222334456788899988883 4444433334445556688888889999
Q ss_pred HHHHHHHHHHHcCC
Q 003913 385 KSLEIFREMQERLG 398 (787)
Q Consensus 385 ~A~~~~~~m~~~g~ 398 (787)
+..++-.++..+|.
T Consensus 244 ~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 244 ELFELSSRLLEKGN 257 (932)
T ss_pred HHHHHHHHHHHhCC
Confidence 98888888888753
No 105
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.22 E-value=0.0002 Score=71.74 Aligned_cols=180 Identities=13% Similarity=0.058 Sum_probs=129.3
Q ss_pred HHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHH
Q 003913 299 SGLIWLHSYQDNIDKERISLLKKEMQQAGFEEG----KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPT--PAFVY 372 (787)
Q Consensus 299 ~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~ 372 (787)
..+..+..+...|++++|...|++.... .|+ ..++..+..++.+.|++++|...++++.+..+.... .++..
T Consensus 35 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 35 ELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 3444457788999999999999998774 343 246778888999999999999999999987653222 24555
Q ss_pred HHHHHHHc--------CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003913 373 KMEAYAKI--------GEFMKSLEIFREMQERLGSAS-VPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINL 443 (787)
Q Consensus 373 li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 443 (787)
+..++.+. |+.++|.+.|+++... .|+ ...+..+..... .... . ......+
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~~-------~-------~~~~~~~ 172 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRNR-------L-------AGKELYV 172 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHHH-------H-------HHHHHHH
Confidence 56666654 7889999999999876 333 233322221110 1000 0 0112356
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 003913 444 TNMYLNLGMHDRLHLAFSECLEKC---RPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 444 i~~~~~~g~~~~a~~~~~~m~~~~---~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (787)
...|.+.|++++|...+....+.. +.....+..+..+|.+.|++++|..+++.+...
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 677899999999999999988733 234678999999999999999999999988775
No 106
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=3.8e-05 Score=80.47 Aligned_cols=387 Identities=14% Similarity=0.055 Sum_probs=244.3
Q ss_pred CChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChH
Q 003913 271 LSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGK-EVLLSVLRVCAKEGDVE 349 (787)
Q Consensus 271 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~ 349 (787)
++.|+++.|...|-+.+..... +...|+--. .++.+.|++++|++=-.+-++ +.|+- .-|+-...++.-.|+++
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrs--aa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLSPT-NHVLYSNRS--AAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred cccccHHHHHHHHHHHHccCCC-ccchhcchH--HHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHH
Confidence 5568999999999998877654 667777666 788888888888765554444 67774 47888888999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH--HH--HcCC-----CCCHHHHHHHHHHHHhc-----
Q 003913 350 DAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFRE--MQ--ERLG-----SASVPAYHKIIELLCKA----- 415 (787)
Q Consensus 350 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--m~--~~g~-----~p~~~t~~~li~~~~~~----- 415 (787)
+|..-|.+=++.... +...++-+..++.-.. .+.+.|.. |. ..+. ......|..++..+-+.
T Consensus 88 eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 88 EAILAYSEGLEKDPS-NKQLKTGLAQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred HHHHHHHHHhhcCCc-hHHHHHhHHHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 999999988877643 6677777777772110 11111110 00 0000 00111233333322211
Q ss_pred -----CChHHHHHHHHH-----HHHcC-------CCC------------C----------HHHHHHHHHHHHhcCCHHHH
Q 003913 416 -----EETELTESLMKE-----FVETG-------MKP------------L----------MPSYINLTNMYLNLGMHDRL 456 (787)
Q Consensus 416 -----g~~~~A~~l~~~-----m~~~g-------~~p------------~----------~~t~~~li~~~~~~g~~~~a 456 (787)
.++..|...+.. +...| ..| | ..-+..+.++.-+..+++.|
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 111222211111 00111 111 0 12245677788888889999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHH-------HHHHHHHcCCCHHHHHHH
Q 003913 457 HLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCN-------IILSAYLSSGDFVKAEKI 529 (787)
Q Consensus 457 ~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~-------~li~~~~~~g~~~~A~~~ 529 (787)
.+-+....+.. -+..-++....+|...|.+.+.....+...+.|. -...-|+ .+..+|.+.++++.|+.+
T Consensus 244 ~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr--e~rad~klIak~~~r~g~a~~k~~~~~~ai~~ 320 (539)
T KOG0548|consen 244 IQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR--ELRADYKLIAKALARLGNAYTKREDYEGAIKY 320 (539)
T ss_pred HHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH--HHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHH
Confidence 99999888743 5666677778899999999999988888887762 2223333 334466778899999999
Q ss_pred HHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhhhhccchhhcceeEE--EEEccCCccc
Q 003913 530 YDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMH 607 (787)
Q Consensus 530 ~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--~~~~p~~~~~ 607 (787)
|.+.+..- .+|+....+..+-...++.....+. .++. ..--..=.+.+...|++..|...+. +..+|+++..
T Consensus 321 ~~kaLte~--Rt~~~ls~lk~~Ek~~k~~e~~a~~---~pe~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~l 394 (539)
T KOG0548|consen 321 YQKALTEH--RTPDLLSKLKEAEKALKEAERKAYI---NPEK-AEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARL 394 (539)
T ss_pred HHHHhhhh--cCHHHHHHHHHHHHHHHHHHHHHhh---ChhH-HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHH
Confidence 99987543 5677766665544332222211110 0110 1111222667788889988888777 8888999999
Q ss_pred HHHHHHHHHHchhhcCCCccccCCCCCcceEEeeeccchHHHHHHhhccCcccccccchhhcCChhHHHH
Q 003913 608 SVLRRYLYDQYHEWLHPSFKVSDGNDDIPYKYSTISHPYFCFYADKFWPKGRLVIPKLIHRWLTPRALAY 677 (787)
Q Consensus 608 ~~~l~~~y~~~g~~~~A~~~~~~~~~~~p~~~~t~~~~~~~~~~~g~~~~a~~~~~~mi~~gl~P~~lay 677 (787)
|...+-.|.++|.+..|+.-.....+..|.+...|.-....+.....|.++.+.|.+-++. .|+..-+
T Consensus 395 YsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~~~e~ 462 (539)
T KOG0548|consen 395 YSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPSNAEA 462 (539)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CchhHHH
Confidence 9999999999999999888777788888875555555555566666666666666665543 3554433
No 107
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.21 E-value=4.8e-05 Score=82.51 Aligned_cols=210 Identities=12% Similarity=0.075 Sum_probs=170.1
Q ss_pred hhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChH
Q 003913 305 HSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFM 384 (787)
Q Consensus 305 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 384 (787)
..+.+.|-...|..+|++. ..|.-+|.+|+..|+..+|..+..+-.++ +||...|..+.+......-++
T Consensus 406 ell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yE 474 (777)
T KOG1128|consen 406 ELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYE 474 (777)
T ss_pred HHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHH
Confidence 4445566667777777654 45678889999999999999999888874 478899999999988888899
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003913 385 KSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECL 464 (787)
Q Consensus 385 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 464 (787)
+|.++++....+ +-..+.....+.++++++.+.|+.-.+.. ..-..+|..+..++.+.+++..|.+.|....
T Consensus 475 kawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcv 546 (777)
T KOG1128|consen 475 KAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCV 546 (777)
T ss_pred HHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHh
Confidence 999999876543 11122222334789999999998877632 2346789999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 465 EKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 465 ~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
.+-+-+...||.+-.+|.+.|+-.+|...+.+..+-+ .-+-..|...+....+-|.+++|++.+.+|..
T Consensus 547 tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn--~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 547 TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN--YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC--CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 8878888999999999999999999999999999876 34567788888888999999999999999875
No 108
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.21 E-value=6.2e-05 Score=79.63 Aligned_cols=223 Identities=15% Similarity=0.059 Sum_probs=174.9
Q ss_pred hhhccCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh
Q 003913 305 HSYQDNIDKERISLLKKEMQQAGFEE-GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEF 383 (787)
Q Consensus 305 ~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 383 (787)
.-+.++|++.+|.-.|+...+. .| +...|.-|-..-+..++-..|+..+++..+..+. +..+.-.|.-.|...|.-
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkq--dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQ--DPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhh--ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhH
Confidence 3346788888888888888775 34 5668888888888999999999999999988764 678888899999999999
Q ss_pred HHHHHHHHHHHHcCCC--------CCHHHHHHHHHHHHhcCChHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCCHH
Q 003913 384 MKSLEIFREMQERLGS--------ASVPAYHKIIELLCKAEETELTESLMKEFV-ETGMKPLMPSYINLTNMYLNLGMHD 454 (787)
Q Consensus 384 ~~A~~~~~~m~~~g~~--------p~~~t~~~li~~~~~~g~~~~A~~l~~~m~-~~g~~p~~~t~~~li~~~~~~g~~~ 454 (787)
.+|++.|+..+....+ ++...-+. ..+.....+....++|-++. +.+..+|..++..|.-.|--.|.++
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 9999999988654211 00000000 11122223344555555554 4565688889999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 003913 455 RLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVN-TRSCNIILSAYLSSGDFVKAEKIYDLM 533 (787)
Q Consensus 455 ~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m 533 (787)
+|...|+..+...+-|...||-|.-.++...+.++|+..|++.++. +|+ +.++..|.-.|...|.+++|.+.|-+.
T Consensus 448 raiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL---qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 448 RAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL---QPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc---CCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 9999999999877788999999999999999999999999999985 566 568888889999999999999998876
Q ss_pred HH
Q 003913 534 CL 535 (787)
Q Consensus 534 ~~ 535 (787)
+.
T Consensus 525 L~ 526 (579)
T KOG1125|consen 525 LS 526 (579)
T ss_pred HH
Confidence 64
No 109
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.21 E-value=0.0048 Score=69.45 Aligned_cols=38 Identities=16% Similarity=-0.002 Sum_probs=25.9
Q ss_pred HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHc
Q 003913 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGK 192 (787)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~ 192 (787)
-+-+++++..-+..++..+..| ..|..++|+|...|..
T Consensus 847 EvEkRNRLklLlp~LE~~i~eG--~~d~a~hnAlaKIyID 884 (1666)
T KOG0985|consen 847 EVEKRNRLKLLLPWLESLIQEG--SQDPATHNALAKIYID 884 (1666)
T ss_pred HHHhhhhHHHHHHHHHHHHhcc--CcchHHHhhhhheeec
Confidence 3446666777777777777777 4577788877766543
No 110
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.20 E-value=0.00026 Score=68.19 Aligned_cols=119 Identities=8% Similarity=0.030 Sum_probs=66.8
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCC--HHHH
Q 003913 380 IGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNM-YLNLGM--HDRL 456 (787)
Q Consensus 380 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~-~~~~g~--~~~a 456 (787)
.++.+++...++...+.. +.|...|..+...|...|++++|...|++..+.. +-+...+..+..+ |...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 344455555555554442 2355566666666666666666666666665533 2245555555554 244444 3566
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 003913 457 HLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 457 ~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (787)
.+++++.++..+.+..++..+...+.+.|++++|+..|+++.+.
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66666665544555566666666666666666666666666655
No 111
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.20 E-value=0.0055 Score=74.74 Aligned_cols=261 Identities=11% Similarity=-0.003 Sum_probs=169.1
Q ss_pred hhHHHHHHHHHHHHHcCC------ccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHH
Q 003913 274 YYLQQAEFIFHNLLTSGL------EIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGK----EVLLSVLRVCA 343 (787)
Q Consensus 274 g~~~~A~~~~~~m~~~~~------~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~----~t~~~li~~~~ 343 (787)
|++++|...+......-- .+....-........+...|++++|...+++....--..+. ...+.+...+.
T Consensus 423 g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~ 502 (903)
T PRK04841 423 HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH 502 (903)
T ss_pred CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence 588999888887754311 11111111222345567789999999999987763111121 23455666777
Q ss_pred hcCChHHHHHHHHHHHhCCCC---C--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHH
Q 003913 344 KEGDVEDAEKTWLRLLESDNG---I--PTPAFVYKMEAYAKIGEFMKSLEIFREMQER----LGS--A-SVPAYHKIIEL 411 (787)
Q Consensus 344 ~~g~~~~A~~~~~~m~~~~~~---~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~--p-~~~t~~~li~~ 411 (787)
..|++++|...+.+.....-. + ...++..+...+...|++++|...+++.... +.. + ....+..+...
T Consensus 503 ~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 582 (903)
T PRK04841 503 CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQL 582 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 899999999999887653111 1 1234455677888999999999999886542 211 1 22345556667
Q ss_pred HHhcCChHHHHHHHHHHHHc--CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCHHHH-----HHHHHH
Q 003913 412 LCKAEETELTESLMKEFVET--GMKP--LMPSYINLTNMYLNLGMHDRLHLAFSECLE--KCRPNRTIY-----GIYLES 480 (787)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~--g~~p--~~~t~~~li~~~~~~g~~~~a~~~~~~m~~--~~~p~~~~~-----~~li~~ 480 (787)
+...|++++|...+++.... ...+ ...++..+...+...|+.+.|...+..... ........+ ...+..
T Consensus 583 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 662 (903)
T PRK04841 583 LWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIY 662 (903)
T ss_pred HHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHH
Confidence 78889999999999887652 1122 234555667788899999999999988864 111111111 112344
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCC---HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 481 LKNAGNIEKAEEIFNHMHSDQTIGVN---TRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 481 ~~~~g~~~~A~~l~~~m~~~~~~~p~---~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
+...|+.+.|..++....... .... ...+..+..++...|++++|...+++...
T Consensus 663 ~~~~g~~~~A~~~l~~~~~~~-~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~ 719 (903)
T PRK04841 663 WQMTGDKEAAANWLRQAPKPE-FANNHFLQGQWRNIARAQILLGQFDEAEIILEELNE 719 (903)
T ss_pred HHHCCCHHHHHHHHHhcCCCC-CccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 566899999999988766532 1111 11245677788999999999999998875
No 112
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=0.0039 Score=62.11 Aligned_cols=414 Identities=12% Similarity=0.020 Sum_probs=222.1
Q ss_pred hcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHH
Q 003913 156 RIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLD 235 (787)
Q Consensus 156 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~ 235 (787)
..+++..|..+++.-...+. .....+---+..++.+.|++++|..++.-+.+..- |+...|-.|...+. -.|.+.
T Consensus 34 s~rDytGAislLefk~~~~~-EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~-~~~el~vnLAcc~F---yLg~Y~ 108 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLDR-EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDD-APAELGVNLACCKF---YLGQYI 108 (557)
T ss_pred hcccchhHHHHHHHhhccch-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCC-CCcccchhHHHHHH---HHHHHH
Confidence 45678888888887765541 11222333455677799999999999998877543 45555555544444 478888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHH
Q 003913 236 EACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKER 315 (787)
Q Consensus 236 ~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~ 315 (787)
+|..+-.+. |+.-..+-++--++.+. ++-++-..+++.+...- -+.-... ........+.+
T Consensus 109 eA~~~~~ka-------~k~pL~~RLlfhlahkl-----ndEk~~~~fh~~LqD~~--EdqLSLA-----svhYmR~HYQe 169 (557)
T KOG3785|consen 109 EAKSIAEKA-------PKTPLCIRLLFHLAHKL-----NDEKRILTFHSSLQDTL--EDQLSLA-----SVHYMRMHYQE 169 (557)
T ss_pred HHHHHHhhC-------CCChHHHHHHHHHHHHh-----CcHHHHHHHHHHHhhhH--HHHHhHH-----HHHHHHHHHHH
Confidence 887765433 44455555555555543 25555555555553211 0111111 11122224789
Q ss_pred HHHHHHHHHHcCCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc--CChHH-------
Q 003913 316 ISLLKKEMQQAGFEEGKEVLLS-VLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKI--GEFMK------- 385 (787)
Q Consensus 316 a~~l~~~m~~~g~~p~~~t~~~-li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~--g~~~~------- 385 (787)
|.+++++.... .|+-...|. +.-+|.+..-++-+.++++--++.-+. +..+-|.......+. |+..+
T Consensus 170 AIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pd-StiA~NLkacn~fRl~ngr~ae~E~k~la 246 (557)
T KOG3785|consen 170 AIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPD-STIAKNLKACNLFRLINGRTAEDEKKELA 246 (557)
T ss_pred HHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCC-cHHHHHHHHHHHhhhhccchhHHHHHHHH
Confidence 99999998774 344444443 344567888889899888876665322 334444433333332 22221
Q ss_pred --------------------------HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 003913 386 --------------------------SLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPS 439 (787)
Q Consensus 386 --------------------------A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 439 (787)
|++++--+.+. -| ..--.|+--|.+.+++.+|..+.+++.- ..|-.+.
T Consensus 247 dN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~Eyi 320 (557)
T KOG3785|consen 247 DNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYI 320 (557)
T ss_pred hcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCC--CChHHHH
Confidence 22221111111 11 1223345557778888888777665431 2233333
Q ss_pred HHHHHHHHH-----hcCCHHHHHHHHHHHHh-cCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHH
Q 003913 440 YINLTNMYL-----NLGMHDRLHLAFSECLE-KCRPN-RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNI 512 (787)
Q Consensus 440 ~~~li~~~~-----~~g~~~~a~~~~~~m~~-~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ 512 (787)
.-.++.+-. ....+.-|.+.|+..-+ +..-| +.--.++...+.-..++++.+-.++.+..- +..|..---.
T Consensus 321 lKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY--F~NdD~Fn~N 398 (557)
T KOG3785|consen 321 LKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY--FTNDDDFNLN 398 (557)
T ss_pred HHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCcchhhhH
Confidence 333332211 11234456666655443 22222 222344555555556678888777777664 3333333345
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhhhhccc-hhh
Q 003913 513 ILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESD-EKR 591 (787)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~-~~~ 591 (787)
+..+++..|.+.+|+++|-.... |++ -+-.+|.+++.-|..+.. .+.
T Consensus 399 ~AQAk~atgny~eaEelf~~is~------~~i--------------------------kn~~~Y~s~LArCyi~nkkP~l 446 (557)
T KOG3785|consen 399 LAQAKLATGNYVEAEELFIRISG------PEI--------------------------KNKILYKSMLARCYIRNKKPQL 446 (557)
T ss_pred HHHHHHHhcChHHHHHHHhhhcC------hhh--------------------------hhhHHHHHHHHHHHHhcCCchH
Confidence 67788888888888888876642 221 125677777777766543 333
Q ss_pred cceeEEEEEccCC-cccHHHHHHHHHHchhhcCCCccccCCCCCcc
Q 003913 592 KRHMIRFQFNENS-RMHSVLRRYLYDQYHEWLHPSFKVSDGNDDIP 636 (787)
Q Consensus 592 a~~~~~~~~~p~~-~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~p 636 (787)
|-.++-..-.|.+ -+..-++++-|.+++.+=-|...|..-...+|
T Consensus 447 AW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 447 AWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 3222221111222 22233456777777776555555543333333
No 113
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.20 E-value=0.00011 Score=72.57 Aligned_cols=307 Identities=12% Similarity=-0.001 Sum_probs=149.1
Q ss_pred HHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH-HH
Q 003913 296 DIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGK-EVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFV-YK 373 (787)
Q Consensus 296 ~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~l 373 (787)
.+-..+-....+..+|++.+|+.-|....+. .|+. .++---...|...|+-..|..=+..+++.. ||-..-. --
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~--dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK--pDF~~ARiQR 112 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG--DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELK--PDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcC--ccHHHHHHHh
Confidence 3334444455566666677776666665542 2222 122233345666666666666666666543 3322211 12
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 003913 374 MEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMH 453 (787)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 453 (787)
...+.+.|.+++|..=|+..++.. |+..+ ...++.+.-..++-. .....+..+...|+.
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~~~e~~----------------~l~~ql~s~~~~GD~ 171 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHE--PSNGL---VLEAQSKLALIQEHW----------------VLVQQLKSASGSGDC 171 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHhHHHHH----------------HHHHHHHHHhcCCch
Confidence 345666777777777777766552 21110 011111110011100 111122333444555
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 003913 454 DRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLM 533 (787)
Q Consensus 454 ~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m 533 (787)
..|+.....+++-++-|...|..-..+|...|....|+.-++...+.. .-|..++.-+-..+...|+.+.++...++.
T Consensus 172 ~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs--~DnTe~~ykis~L~Y~vgd~~~sL~~iREC 249 (504)
T KOG0624|consen 172 QNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS--QDNTEGHYKISQLLYTVGDAENSLKEIREC 249 (504)
T ss_pred hhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc--ccchHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 555555555555445555555555556666666655555555444432 234445555555555555555555555555
Q ss_pred HHcCCccCHHHH------H-------------------HHHHHHhhcccccc-cccccCCchHHHHHHHHHHhhhhhhcc
Q 003913 534 CLKKYEIESAWM------E-------------------KLDYVLSLNRKEVK-KPVSLNLSSEQRENLIGLLLGGLCIES 587 (787)
Q Consensus 534 ~~~g~~~~p~~~------~-------------------~l~~~~~l~~~~~~-~~~~~~l~~~~~~~~~~~ll~~~~~~~ 587 (787)
++ ++|+.- . ++..++..+++.++ .|..... ....+..+-..+...+
T Consensus 250 LK----ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~i----r~~~~r~~c~C~~~d~ 321 (504)
T KOG0624|consen 250 LK----LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMI----RYNGFRVLCTCYREDE 321 (504)
T ss_pred Hc----cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccce----eeeeeheeeecccccC
Confidence 54 444421 1 11122222222222 1100000 0112222223334445
Q ss_pred chhhcceeEE--EEEccCCcccHHHHHHHHHHchhhcCCCccccCCCCCcce
Q 003913 588 DEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSFKVSDGNDDIPY 637 (787)
Q Consensus 588 ~~~~a~~~~~--~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~p~ 637 (787)
++.+|++... +.++|+++.++.-.+.+|.....+++|+.-++++.+..+.
T Consensus 322 ~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 322 QFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred CHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 5666665554 7777777777777777777777777777777666666554
No 114
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.20 E-value=0.014 Score=61.82 Aligned_cols=128 Identities=9% Similarity=0.107 Sum_probs=77.5
Q ss_pred hhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCH
Q 003913 155 MRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCL 234 (787)
Q Consensus 155 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~ 234 (787)
...+..++++.+++.+... ++.....|..-|..-.+..+++..+++|.+....-+ +..-|..-|+---. ..+..
T Consensus 30 ~qt~~~~~~R~~YEq~~~~--FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lYl~YVR~--~~~~~ 103 (656)
T KOG1914|consen 30 AQTQPIDKVRETYEQLVNV--FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLYLSYVRE--TKGKL 103 (656)
T ss_pred HccCCHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHHHHHHHH--HccCc
Confidence 3455789999999999876 677888899999999999999999999999887643 56667766664432 22332
Q ss_pred H----HHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHc--CCCCC-ChhhHHHHHHHHHHHHH
Q 003913 235 D----EACSIYNRMIQLGGYQPRPS-LHNSLFRALVS--KPGGL-SKYYLQQAEFIFHNLLT 288 (787)
Q Consensus 235 ~----~A~~l~~~m~~~~g~~pd~~-t~~~ll~~~~~--~~~~~-~~g~~~~A~~~~~~m~~ 288 (787)
. .-.+.|+-....-|+.+-.. .|+.-+.-+-. ..|.. .+.+++...+++++++.
T Consensus 104 ~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 104 FGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred chHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 2 23344554444435444332 24443333211 11111 11255556666666654
No 115
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.20 E-value=0.00012 Score=66.67 Aligned_cols=92 Identities=12% Similarity=-0.105 Sum_probs=43.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCH
Q 003913 408 IIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNI 487 (787)
Q Consensus 408 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~ 487 (787)
+...+...|++++|...|+...... +.+..++..+..++.+.|++++|...|+...+..+.+..++..+..++.+.|++
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCH
Confidence 3444444444444544444444422 223444444444444444444444444444443344444444444445555555
Q ss_pred HHHHHHHHHhhhC
Q 003913 488 EKAEEIFNHMHSD 500 (787)
Q Consensus 488 ~~A~~l~~~m~~~ 500 (787)
++|...|+...+.
T Consensus 109 ~eAi~~~~~Al~~ 121 (144)
T PRK15359 109 GLAREAFQTAIKM 121 (144)
T ss_pred HHHHHHHHHHHHh
Confidence 5555555544443
No 116
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.17 E-value=0.0004 Score=66.76 Aligned_cols=160 Identities=16% Similarity=0.068 Sum_probs=125.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003913 371 VYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNL 450 (787)
Q Consensus 371 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~ 450 (787)
..+-..+...|+-+.+..+....... .+-|....+..+....+.|++.+|...+++..... ++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 44566777778888877777765543 22355566668888888889999988888888754 67888888888889999
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 003913 451 GMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIY 530 (787)
Q Consensus 451 g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~ 530 (787)
|+.+.|..-|.+..+-.+-+...+|.|.-.|.-.|+.+.|..++......+ +-|...-..|.......|++++|.++.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~--~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP--AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC--CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 999999888888888666677788888888888899999999999888875 347777788888888899999988876
Q ss_pred HHHH
Q 003913 531 DLMC 534 (787)
Q Consensus 531 ~~m~ 534 (787)
..-.
T Consensus 226 ~~e~ 229 (257)
T COG5010 226 VQEL 229 (257)
T ss_pred cccc
Confidence 6443
No 117
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.17 E-value=0.00025 Score=68.23 Aligned_cols=147 Identities=12% Similarity=0.184 Sum_probs=119.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 003913 374 MEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMH 453 (787)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 453 (787)
+-.|.+.|+++......+.+.. |. . .+...++.+++...++..++.. +.|...|..|...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 5678888888776544432221 11 1 1223567788888888877754 66789999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 003913 454 DRLHLAFSECLEKCRPNRTIYGIYLESL-KNAGN--IEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIY 530 (787)
Q Consensus 454 ~~a~~~~~~m~~~~~p~~~~~~~li~~~-~~~g~--~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~ 530 (787)
++|...|+...+..+.+...+..+..++ ...|+ .++|.+++++..+.+ +-+..++..+...+.+.|++++|+..|
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d--P~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALD--ANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999987778999999999874 67787 599999999999986 567889999999999999999999999
Q ss_pred HHHHH
Q 003913 531 DLMCL 535 (787)
Q Consensus 531 ~~m~~ 535 (787)
+++++
T Consensus 168 ~~aL~ 172 (198)
T PRK10370 168 QKVLD 172 (198)
T ss_pred HHHHh
Confidence 99997
No 118
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.17 E-value=0.00044 Score=78.96 Aligned_cols=146 Identities=13% Similarity=0.146 Sum_probs=105.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003913 365 IPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSAS-VPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINL 443 (787)
Q Consensus 365 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 443 (787)
.++.++-.|.......|++++|..+++...+. .|| ......+..++.+.+++++|....++..... +-+......+
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 35677777777888888888888888887765 344 4466677778888888888888888877743 3345666777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHH
Q 003913 444 TNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILS 515 (787)
Q Consensus 444 i~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~ 515 (787)
..++.+.|++++|..+|++.....+-+..++..+...+-+.|+.++|...|++..+. ..|-...|+.++.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~--~~~~~~~~~~~~~ 230 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA--IGDGARKLTRRLV 230 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--hCcchHHHHHHHH
Confidence 777778888888888888887644445777888888888888888888888887776 3456666665543
No 119
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.14 E-value=0.001 Score=74.74 Aligned_cols=360 Identities=9% Similarity=-0.053 Sum_probs=175.5
Q ss_pred hHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCH
Q 003913 216 MTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQK 295 (787)
Q Consensus 216 ~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 295 (787)
..|..|-.-|+ ...+...|.+.|++..+.+ ..|......+...+++.. .++.|..+.-..-+.. ..-.
T Consensus 493 paf~~LG~iYr---d~~Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~------~we~a~~I~l~~~qka-~a~~ 560 (1238)
T KOG1127|consen 493 PAFAFLGQIYR---DSDDMKRAKKCFDKAFELD--ATDAEAAAASADTYAEES------TWEEAFEICLRAAQKA-PAFA 560 (1238)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccc------cHHHHHHHHHHHhhhc-hHHH
Confidence 34555555555 3345555666666655421 223334444555555542 5555555522211111 1122
Q ss_pred HHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH--
Q 003913 296 DIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEE-GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVY-- 372 (787)
Q Consensus 296 ~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-- 372 (787)
...+|.-+.-.+-+.++...|..-|+...+. .| |...|..+..+|...|++..|.++|.+.....+ ...|..
T Consensus 561 ~k~nW~~rG~yyLea~n~h~aV~~fQsALR~--dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP---~s~y~~fk 635 (1238)
T KOG1127|consen 561 CKENWVQRGPYYLEAHNLHGAVCEFQSALRT--DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRP---LSKYGRFK 635 (1238)
T ss_pred HHhhhhhccccccCccchhhHHHHHHHHhcC--CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCc---HhHHHHHH
Confidence 3334444444555555666666555555442 33 344566666666666666666666666555442 122222
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-------cCCC-----
Q 003913 373 KMEAYAKIGEFMKSLEIFREMQER------LGSASVPAYHKIIELLCKAEETELTESLMKEFVE-------TGMK----- 434 (787)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~-------~g~~----- 434 (787)
....-|..|++.+|+..+...... +..--..++-.+...+...|-...|...++.-++ ....
T Consensus 636 ~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~ 715 (1238)
T KOG1127|consen 636 EAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQ 715 (1238)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 233345556666666665554321 1111112222222223223322233322222211 1111
Q ss_pred ---------------CC---HHHHHHHHHHHHhcCCH---H---HHHHHHHHHHhcCCCCHHHHHHHHHHHHh----c--
Q 003913 435 ---------------PL---MPSYINLTNMYLNLGMH---D---RLHLAFSECLEKCRPNRTIYGIYLESLKN----A-- 484 (787)
Q Consensus 435 ---------------p~---~~t~~~li~~~~~~g~~---~---~a~~~~~~m~~~~~p~~~~~~~li~~~~~----~-- 484 (787)
|+ ......|..-.-+.+.. | -|.+.+-.-+ ....+..+|..|+..|.+ .
T Consensus 716 Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl-sl~~~~~~WyNLGinylr~f~~l~e 794 (1238)
T KOG1127|consen 716 WIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL-SLAIHMYPWYNLGINYLRYFLLLGE 794 (1238)
T ss_pred HHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH-HHhhccchHHHHhHHHHHHHHHcCC
Confidence 22 11111111111112211 1 0111111111 112234455555544443 1
Q ss_pred --CCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccc
Q 003913 485 --GNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKP 562 (787)
Q Consensus 485 --g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~ 562 (787)
.+...|...+.+.++.. ..|..+||.|.-. ..-|.+.-|...|-+-+. ..|.
T Consensus 795 t~~~~~~Ai~c~KkaV~L~--ann~~~WnaLGVl-sg~gnva~aQHCfIks~~----sep~------------------- 848 (1238)
T KOG1127|consen 795 TMKDACTAIRCCKKAVSLC--ANNEGLWNALGVL-SGIGNVACAQHCFIKSRF----SEPT------------------- 848 (1238)
T ss_pred cchhHHHHHHHHHHHHHHh--hccHHHHHHHHHh-hccchhhhhhhhhhhhhh----cccc-------------------
Confidence 12345666666666552 4466666666544 444555555555544443 2332
Q ss_pred cccCCchHHHHHHHHHHhhhhhhccchhhcceeEE--EEEccCCcccHHHHHHHHHHchhhcCCCccc
Q 003913 563 VSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSFKV 628 (787)
Q Consensus 563 ~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~ 628 (787)
...+|..+.-.|....+++.|..++. ..++|.+...+.-.+-+-...|+.-++...+
T Consensus 849 ---------~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lf 907 (1238)
T KOG1127|consen 849 ---------CHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILF 907 (1238)
T ss_pred ---------chhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHH
Confidence 26789888888888899999988887 7888999988888888888888877776665
No 120
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.14 E-value=0.00054 Score=79.44 Aligned_cols=207 Identities=11% Similarity=0.142 Sum_probs=170.2
Q ss_pred CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH
Q 003913 329 EEG-KEVLLSVLRVCAKEGDVEDAEKTWLRLLES-DNGI---PTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVP 403 (787)
Q Consensus 329 ~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 403 (787)
.|| ...|-.-|......+++++|+++.++.+.. ++.- -...|.++++.-...|.-+...++|++..+.. -...
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~ 1531 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYT 1531 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHH
Confidence 354 567888888899999999999999998865 2211 13478888888888888889999999998752 1245
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHH
Q 003913 404 AYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRP--NRTIYGIYLESL 481 (787)
Q Consensus 404 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p--~~~~~~~li~~~ 481 (787)
.|..|...|.+.+..++|-++++.|.+.- .-....|...+..+.+..+-+.|..++.+.++-.+. .+....-.+..-
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 68899999999999999999999999842 356789999999999999999999999998874444 445555566677
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCcc
Q 003913 482 KNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEI 540 (787)
Q Consensus 482 ~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 540 (787)
.+.|+.+.+..+|+...... |--...|+..|+.-.++|+.+.+..+|++.+..++.+
T Consensus 1611 Fk~GDaeRGRtlfEgll~ay--PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAY--PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhC--ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 78999999999999999874 5567899999999999999999999999999877543
No 121
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.13 E-value=5.4e-06 Score=89.58 Aligned_cols=224 Identities=14% Similarity=0.063 Sum_probs=154.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 003913 406 HKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAG 485 (787)
Q Consensus 406 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g 485 (787)
..+...+.+.|-...|..++++.. .+..+|.+|+..|+..+|..+...-.+ .+|+...|..+.+.....-
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChH
Confidence 344556666666666666666543 345566667777776677666666555 4666666766666666666
Q ss_pred CHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhccccccccccc
Q 003913 486 NIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSL 565 (787)
Q Consensus 486 ~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~ 565 (787)
-+++|.++++....+ .-..+..-..+.+++.++.+.|+.-.+ ++|-.
T Consensus 472 ~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~----~nplq--------------------- 518 (777)
T KOG1128|consen 472 LYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLE----INPLQ--------------------- 518 (777)
T ss_pred HHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhh----cCccc---------------------
Confidence 666777666654332 111111122335667777777666554 33321
Q ss_pred CCchHHHHHHHHHHhhhhhhccchhhcceeEE--EEEccCCcccHHHHHHHHHHchhhcCCCccccCCCCCcceEEeeec
Q 003913 566 NLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSFKVSDGNDDIPYKYSTIS 643 (787)
Q Consensus 566 ~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~p~~~~t~~ 643 (787)
..+|-.+..+..+.++.+.+...+. ..++|++...++.++..|.+.|+-.+|...+.++++-+...|..|.
T Consensus 519 -------~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWE 591 (777)
T KOG1128|consen 519 -------LGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWE 591 (777)
T ss_pred -------hhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeee
Confidence 5678777777788888888888877 8889999999999999999999999998888888888877788888
Q ss_pred cchHHHHHHhhccCcccccccchh---hcCChhHHHHHh
Q 003913 644 HPYFCFYADKFWPKGRLVIPKLIH---RWLTPRALAYWF 679 (787)
Q Consensus 644 ~~~~~~~~~g~~~~a~~~~~~mi~---~gl~P~~lay~~ 679 (787)
+.......-|++++|++.++++.+ ++-.|.++.-..
T Consensus 592 Nymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv 630 (777)
T KOG1128|consen 592 NYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIV 630 (777)
T ss_pred chhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHH
Confidence 888888888999999988887664 444555554433
No 122
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.11 E-value=0.014 Score=58.24 Aligned_cols=303 Identities=16% Similarity=0.140 Sum_probs=161.2
Q ss_pred HHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHH---HHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003913 186 LADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIV---AYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFR 262 (787)
Q Consensus 186 li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~---~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~ 262 (787)
+-..+...|++.+|+.-|....+- |...|-++.. .|. ..|+-.-|+.-+....+ ++||-..-..--.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yL---AmGksk~al~Dl~rVle---lKpDF~~ARiQRg 113 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYL---AMGKSKAALQDLSRVLE---LKPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHh---hhcCCccchhhHHHHHh---cCccHHHHHHHhc
Confidence 333444556666666666666553 3334443332 233 35666666666666665 4566432211111
Q ss_pred H-HHcCCCCCChhhHHHHHHHHHHHHHcCCcc--CHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003913 263 A-LVSKPGGLSKYYLQQAEFIFHNLLTSGLEI--QKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVL 339 (787)
Q Consensus 263 ~-~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li 339 (787)
. +.+ .|.+++|..=|+.++.....- ....++-++ +.+++ ......+
T Consensus 114 ~vllK------~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~----------------~~~e~---------~~l~~ql 162 (504)
T KOG0624|consen 114 VVLLK------QGELEQAEADFDQVLQHEPSNGLVLEAQSKLA----------------LIQEH---------WVLVQQL 162 (504)
T ss_pred hhhhh------cccHHHHHHHHHHHHhcCCCcchhHHHHHHHH----------------hHHHH---------HHHHHHH
Confidence 1 111 156667766666666544311 011111111 01111 1122233
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 003913 340 RVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETE 419 (787)
Q Consensus 340 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 419 (787)
..+.-.|+...|+.....+++..+ -|...|..-..+|...|++..|+.=++...+.. .-|+.++--+-..+...|+.+
T Consensus 163 ~s~~~~GD~~~ai~~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~ 240 (504)
T KOG0624|consen 163 KSASGSGDCQNAIEMITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAE 240 (504)
T ss_pred HHHhcCCchhhHHHHHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHH
Confidence 334445555555555555555432 244455555556666666666555444443321 124444444455555556666
Q ss_pred HHHHHHHHHHHcCCCCCHHH----HHH-------H--HHHHHhcCCHHHHHHHHHHHHhcCCC-C---HHHHHHHHHHHH
Q 003913 420 LTESLMKEFVETGMKPLMPS----YIN-------L--TNMYLNLGMHDRLHLAFSECLEKCRP-N---RTIYGIYLESLK 482 (787)
Q Consensus 420 ~A~~l~~~m~~~g~~p~~~t----~~~-------l--i~~~~~~g~~~~a~~~~~~m~~~~~p-~---~~~~~~li~~~~ 482 (787)
.++...++.++ +.||... |-. | +......+++.++.+..+..++..+- . ...+..+-.+|.
T Consensus 241 ~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~ 318 (504)
T KOG0624|consen 241 NSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYR 318 (504)
T ss_pred HHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeeccc
Confidence 66555555554 3344221 111 1 12233456677777777776652111 2 233445566777
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 483 NAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 483 ~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
..|++.+|++...+..+.. +.|+.++.--..+|.-...++.|+.-|+...+
T Consensus 319 ~d~~~~eAiqqC~evL~~d--~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 319 EDEQFGEAIQQCKEVLDID--PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred ccCCHHHHHHHHHHHHhcC--chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 7889999999999988863 34588888888899999999999999998886
No 123
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.10 E-value=0.0011 Score=76.59 Aligned_cols=220 Identities=17% Similarity=0.177 Sum_probs=134.0
Q ss_pred CHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCcc
Q 003913 214 SEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEI 293 (787)
Q Consensus 214 d~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p 293 (787)
+...|-.|+..+. ..+++++|.++.+...+ ..|+...+-.+...+.... ++..++..+ .+.
T Consensus 30 n~~a~~~Li~~~~---~~~~~deai~i~~~~l~---~~P~~i~~yy~~G~l~~q~-----~~~~~~~lv--~~l------ 90 (906)
T PRK14720 30 KFKELDDLIDAYK---SENLTDEAKDICEEHLK---EHKKSISALYISGILSLSR-----RPLNDSNLL--NLI------ 90 (906)
T ss_pred hHHHHHHHHHHHH---hcCCHHHHHHHHHHHHH---hCCcceehHHHHHHHHHhh-----cchhhhhhh--hhh------
Confidence 4466777888886 57888888888886665 3566555444444333222 243333333 111
Q ss_pred CHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003913 294 QKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYK 373 (787)
Q Consensus 294 ~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 373 (787)
.......++..+..+...|... .-+...+..+..+|-+.|+.++|..+|+++++..+. |..+.|.+
T Consensus 91 -----------~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~ 156 (906)
T PRK14720 91 -----------DSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKL 156 (906)
T ss_pred -----------hhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHH
Confidence 2333344454444555555553 224457777888888888888888888888888743 77788888
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-------------------CCC
Q 003913 374 MEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVET-------------------GMK 434 (787)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~-------------------g~~ 434 (787)
...|+.. ++++|.+++.+.... +...+++.++.++|.++... |..
T Consensus 157 AY~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~ 220 (906)
T PRK14720 157 ATSYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFT 220 (906)
T ss_pred HHHHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccc
Confidence 8888888 888888888776654 33444555555555555442 212
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 003913 435 PLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLK 482 (787)
Q Consensus 435 p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~ 482 (787)
--..++-.|-..|-...+++++..+++.+++..+.|.....-++..|.
T Consensus 221 ~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 221 RLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 223344444455666666777777777776655556666666666665
No 124
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.09 E-value=7.7e-05 Score=67.81 Aligned_cols=107 Identities=9% Similarity=-0.017 Sum_probs=93.7
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 003913 423 SLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQT 502 (787)
Q Consensus 423 ~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~ 502 (787)
.++++.++ +.|+ .+..+...+...|++++|...|.......+.+..+|..+..++.+.|++++|...|++.....
T Consensus 14 ~~~~~al~--~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~- 88 (144)
T PRK15359 14 DILKQLLS--VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD- 88 (144)
T ss_pred HHHHHHHH--cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence 45555554 3444 355678889999999999999999998778899999999999999999999999999999975
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 503 IGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 503 ~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
+.+...+..+..++...|+.++|+..|+..++
T Consensus 89 -p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 89 -ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66889999999999999999999999999987
No 125
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.08 E-value=0.0015 Score=74.59 Aligned_cols=184 Identities=8% Similarity=0.046 Sum_probs=141.6
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003913 328 FEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHK 407 (787)
Q Consensus 328 ~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 407 (787)
...+...+..|.....+.|++++|..+++...+..+. +......+...+.+.+++++|+..+++....... +....+.
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence 3446788888999999999999999999999988654 5667778899999999999999999999887432 5667778
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCH
Q 003913 408 IIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNI 487 (787)
Q Consensus 408 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~ 487 (787)
+..++.+.|++++|..+|+++...+ .-+..++..+..++-..|+.++|...|+...+...+....|+.++. ++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~------~~ 232 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV------DL 232 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH------HH
Confidence 8889999999999999999999833 3448899999999999999999999999998866777777776653 34
Q ss_pred HHHHHHHHHhhhCCC---CCCCHHHHHHHHHHHHcC
Q 003913 488 EKAEEIFNHMHSDQT---IGVNTRSCNIILSAYLSS 520 (787)
Q Consensus 488 ~~A~~l~~~m~~~~~---~~p~~~t~~~li~~~~~~ 520 (787)
..-..+++++.-.+. .+....+...+|.-|.+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 233 NADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 445566666654331 222334555555555443
No 126
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.04 E-value=0.005 Score=69.53 Aligned_cols=85 Identities=13% Similarity=0.094 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 003913 453 HDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDL 532 (787)
Q Consensus 453 ~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~ 532 (787)
...|...+.+.++.+..+..+||.|.-. ...|++.-|...|-+-.... +-+..+|..+...+.++.+++-|...|..
T Consensus 799 ~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se--p~~~~~W~NlgvL~l~n~d~E~A~~af~~ 875 (1238)
T KOG1127|consen 799 ACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE--PTCHCQWLNLGVLVLENQDFEHAEPAFSS 875 (1238)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc--ccchhheeccceeEEecccHHHhhHHHHh
Confidence 3456777777766666777777777655 55567777776666665553 45677788777778888888888888877
Q ss_pred HHHcCCccCHHH
Q 003913 533 MCLKKYEIESAW 544 (787)
Q Consensus 533 m~~~g~~~~p~~ 544 (787)
.+. ++|..
T Consensus 876 ~qS----LdP~n 883 (1238)
T KOG1127|consen 876 VQS----LDPLN 883 (1238)
T ss_pred hhh----cCchh
Confidence 775 66653
No 127
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.00 E-value=0.00014 Score=65.56 Aligned_cols=98 Identities=14% Similarity=0.003 Sum_probs=76.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHH
Q 003913 436 LMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILS 515 (787)
Q Consensus 436 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~ 515 (787)
+......+...+...|++++|...|+.+....+.+...|..+...|.+.|++++|...|++..+.+ +.+..+|..+..
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~ 93 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD--PDDPRPYFHAAE 93 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCChHHHHHHHH
Confidence 345566677777788888888888888777556677888888888888888888888888877764 556777777888
Q ss_pred HHHcCCCHHHHHHHHHHHHH
Q 003913 516 AYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~~ 535 (787)
.|...|++++|...|++..+
T Consensus 94 ~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 88888888888888888776
No 128
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.97 E-value=0.0012 Score=63.53 Aligned_cols=161 Identities=10% Similarity=0.022 Sum_probs=131.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003913 336 LSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKA 415 (787)
Q Consensus 336 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 415 (787)
..+-..+...|+-+.+..+......... .|....+..+....+.|++.+|...|++.... -++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~-~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYP-KDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCc-ccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHc
Confidence 5566677778888888887776554432 25566667899999999999999999999875 466899999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003913 416 EETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFN 495 (787)
Q Consensus 416 g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 495 (787)
|+.++|..-|.+..+.- .-+...++.|.-.|.-.|+.+.|..++......-.-|..+-..|.......|++++|..+-.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 99999999999998842 22467788888889999999999999998877656688888899999999999999998876
Q ss_pred Hhhh
Q 003913 496 HMHS 499 (787)
Q Consensus 496 ~m~~ 499 (787)
.-..
T Consensus 227 ~e~~ 230 (257)
T COG5010 227 QELL 230 (257)
T ss_pred cccc
Confidence 6543
No 129
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.97 E-value=0.00036 Score=80.39 Aligned_cols=246 Identities=11% Similarity=0.082 Sum_probs=174.3
Q ss_pred CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 003913 327 GFEEG-KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAY 405 (787)
Q Consensus 327 g~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 405 (787)
...|+ ...+..|+..+...+++++|.++.+...+..+. ....|-.+...|.+.++.++|..+ .
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv--~------------- 88 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL--N------------- 88 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh--h-------------
Confidence 34554 557889999999999999999999977776543 334444444477777776666555 2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 003913 406 HKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAG 485 (787)
Q Consensus 406 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g 485 (787)
++.......++.....+...|.+. .-+..++..|..+|-+.|+.++|..+|+++++-.+-|+.+.|.+...|+..
T Consensus 89 --~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~- 163 (906)
T PRK14720 89 --LIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE- 163 (906)
T ss_pred --hhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-
Confidence 333333444444444455555553 234568889999999999999999999999996688999999999999999
Q ss_pred CHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhccccccccccc
Q 003913 486 NIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSL 565 (787)
Q Consensus 486 ~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~ 565 (787)
++++|++++.+.... |...+++..+.+++.++.. .+|+-++.+..........+.
T Consensus 164 dL~KA~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~----~~~~d~d~f~~i~~ki~~~~~----- 218 (906)
T PRK14720 164 DKEKAITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVH----YNSDDFDFFLRIERKVLGHRE----- 218 (906)
T ss_pred hHHHHHHHHHHHHHH----------------HHhhhcchHHHHHHHHHHh----cCcccchHHHHHHHHHHhhhc-----
Confidence 999999999888764 6677789999999999997 444433332222221110000
Q ss_pred CCchHHHHHHHHHHhhhhhhccchhhcceeEE--EEEccCCcccHHHHHHHHHHchhhcC
Q 003913 566 NLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLH 623 (787)
Q Consensus 566 ~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--~~~~p~~~~~~~~l~~~y~~~g~~~~ 623 (787)
..--..++--|-.-|....+++.+..+++ ++++|+|..+..-|+..|. +.+.+
T Consensus 219 ---~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~ 273 (906)
T PRK14720 219 ---FTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD 273 (906)
T ss_pred ---cchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC
Confidence 00114566666677788888999999998 8999999988888888887 34444
No 130
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.92 E-value=1.5e-05 Score=52.32 Aligned_cols=33 Identities=39% Similarity=0.681 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003913 404 AYHKIIELLCKAEETELTESLMKEFVETGMKPL 436 (787)
Q Consensus 404 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 436 (787)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555555554
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.92 E-value=0.0062 Score=63.85 Aligned_cols=183 Identities=11% Similarity=0.032 Sum_probs=125.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003913 330 EGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKII 409 (787)
Q Consensus 330 p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 409 (787)
|+...+...+.+......-..+...+.+..+.+ -...+--..-.+...|++++|+..++.+... .+-|..-+....
T Consensus 272 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~---~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~ 347 (484)
T COG4783 272 PDFQLARARIRAKYEALPNQQAADLLAKRSKRG---GLAAQYGRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAG 347 (484)
T ss_pred ccHHHHHHHHHHHhccccccchHHHHHHHhCcc---chHHHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHH
Confidence 344455555554444333333333333333211 1222223344556778888888888887765 334666666777
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHH
Q 003913 410 ELLCKAEETELTESLMKEFVETGMKPL-MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIE 488 (787)
Q Consensus 410 ~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~ 488 (787)
..+...++..+|.+.++++... .|+ ......+.++|.+.|++.+|..+++......+-|...|..|..+|...|+..
T Consensus 348 ~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~ 425 (484)
T COG4783 348 DILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRA 425 (484)
T ss_pred HHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchH
Confidence 8888888888998888888873 555 5666777888888888888888888888777888888999999998888888
Q ss_pred HHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 003913 489 KAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKK 537 (787)
Q Consensus 489 ~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g 537 (787)
+|..-..++ |...|+++.|...+....+..
T Consensus 426 ~a~~A~AE~-------------------~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 426 EALLARAEG-------------------YALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHH-------------------HHhCCCHHHHHHHHHHHHHhc
Confidence 777655443 556788888888888877643
No 132
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.92 E-value=0.0024 Score=69.12 Aligned_cols=171 Identities=15% Similarity=0.184 Sum_probs=115.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 003913 339 LRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEET 418 (787)
Q Consensus 339 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 418 (787)
|.+......|.+|..+++.+..... -..-|..+.+.|+..|+++.|.++|.+.- .++-.|..|.++|++
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 3444566777788888877766543 23446667778888888888888886431 244567778888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 003913 419 ELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMH 498 (787)
Q Consensus 419 ~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 498 (787)
+.|.++-.+.. |-......|.+-..-.-+.|++.+|.++|-.+- .|+. .|.+|-+.|..+..+.+.++-.
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~---~p~~-----aiqmydk~~~~ddmirlv~k~h 877 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG---EPDK-----AIQMYDKHGLDDDMIRLVEKHH 877 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc---CchH-----HHHHHHhhCcchHHHHHHHHhC
Confidence 88877765543 334445566666666777788888887775543 4543 3778888888888887776654
Q ss_pred hCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003913 499 SDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (787)
Q Consensus 499 ~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (787)
... -..|...+..-|-..|+...|...|-+..
T Consensus 878 ~d~----l~dt~~~f~~e~e~~g~lkaae~~flea~ 909 (1636)
T KOG3616|consen 878 GDH----LHDTHKHFAKELEAEGDLKAAEEHFLEAG 909 (1636)
T ss_pred hhh----hhHHHHHHHHHHHhccChhHHHHHHHhhh
Confidence 322 23466677777888888888888776654
No 133
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.92 E-value=1.7e-05 Score=52.11 Aligned_cols=33 Identities=27% Similarity=0.428 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 003913 369 AFVYKMEAYAKIGEFMKSLEIFREMQERLGSAS 401 (787)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 401 (787)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 678888888888888888888888888888876
No 134
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=0.00092 Score=64.22 Aligned_cols=150 Identities=15% Similarity=0.174 Sum_probs=91.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----
Q 003913 374 MEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLN---- 449 (787)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~---- 449 (787)
...|+..|++++|++...... +......=...+.+..+.+.|.+.+++|.+- .+..|.+-|..++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhcc
Confidence 445666677777776665521 2222222234455666677777777777652 244555555555544
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHH-HHH
Q 003913 450 LGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVK-AEK 528 (787)
Q Consensus 450 ~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~-A~~ 528 (787)
.+.+.+|.-+|++|.+..+|+..+-|.+..++...|++++|..++++...+. ..+..+...+|-.-...|...+ ..+
T Consensus 186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd--~~dpetL~Nliv~a~~~Gkd~~~~~r 263 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD--AKDPETLANLIVLALHLGKDAEVTER 263 (299)
T ss_pred chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCCChHHHHH
Confidence 3457777777777777777777777777777777777888887777777764 3455666555555555555433 344
Q ss_pred HHHHHH
Q 003913 529 IYDLMC 534 (787)
Q Consensus 529 ~~~~m~ 534 (787)
.+..+.
T Consensus 264 ~l~QLk 269 (299)
T KOG3081|consen 264 NLSQLK 269 (299)
T ss_pred HHHHHH
Confidence 444444
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.85 E-value=0.00066 Score=61.11 Aligned_cols=96 Identities=11% Similarity=-0.033 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 003913 404 AYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKN 483 (787)
Q Consensus 404 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~ 483 (787)
....+...+...|+.++|.+.++.+...+ +.+...+..+...|.+.|++++|..+++...+..+.+..++..+...|..
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 34445555566666666666666665543 33555666666666666666666666666665445566666666777777
Q ss_pred cCCHHHHHHHHHHhhhC
Q 003913 484 AGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 484 ~g~~~~A~~l~~~m~~~ 500 (787)
.|++++|...|++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 98 LGEPESALKALDLAIEI 114 (135)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777777665
No 136
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.83 E-value=0.00051 Score=72.55 Aligned_cols=122 Identities=16% Similarity=0.176 Sum_probs=75.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 003913 407 KIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGN 486 (787)
Q Consensus 407 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~ 486 (787)
+|+..+...++++.|..+++++.+.. |+ ....|+..+...++-.+|.+++.+.++..+.+......-...|.+.++
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 34444444555666666666655543 33 233355555555566666666666665445566666666666777777
Q ss_pred HHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003913 487 IEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (787)
Q Consensus 487 ~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (787)
++.|+++.+++.+.. |-+..+|..|..+|.+.|++++|+..++.+.
T Consensus 250 ~~lAL~iAk~av~ls--P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 250 YELALEIAKKAVELS--PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHHhC--chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 777777777777753 3344577777777777777777777777665
No 137
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.82 E-value=0.00065 Score=71.77 Aligned_cols=123 Identities=11% Similarity=0.043 Sum_probs=79.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003913 373 KMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGM 452 (787)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~ 452 (787)
|+..+...++++.|.++|+++.+.. |+. ...+++.+...++-.+|.+++.+.++.. +-+......-...|.+.++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 3444444556666666666665552 332 2235555555566666666666666432 3345555555666777777
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 003913 453 HDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 453 ~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (787)
.+.|..+.+++.+-.+-+..+|..|..+|.+.|+++.|+..++.++-.
T Consensus 250 ~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 250 YELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 777777777777655666778888999999999999998888887743
No 138
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.82 E-value=0.0014 Score=68.53 Aligned_cols=147 Identities=12% Similarity=0.099 Sum_probs=120.9
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChH
Q 003913 341 VCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSAS-VPAYHKIIELLCKAEETE 419 (787)
Q Consensus 341 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~ 419 (787)
.+...|.+++|+..++.+.+.-+. |...+....+.+.+.++..+|.+.++++... .|+ ...+-.+..+|.+.|++.
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChH
Confidence 345689999999999998887543 6666677899999999999999999999876 455 566777889999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 003913 420 LTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (787)
Q Consensus 420 ~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (787)
+|..+++...... +-|...|..|..+|...|+..++..... .+|...|+++.|...+....+
T Consensus 392 eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~A-----------------E~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 392 EAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARA-----------------EGYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHH-----------------HHHHhCCCHHHHHHHHHHHHH
Confidence 9999999988754 6788999999999999999888877654 456778999999999999888
Q ss_pred CCCCCCCHHHH
Q 003913 500 DQTIGVNTRSC 510 (787)
Q Consensus 500 ~~~~~p~~~t~ 510 (787)
.. +++..+|
T Consensus 454 ~~--~~~~~~~ 462 (484)
T COG4783 454 QV--KLGFPDW 462 (484)
T ss_pred hc--cCCcHHH
Confidence 73 4555555
No 139
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.80 E-value=3.3e-05 Score=50.39 Aligned_cols=31 Identities=29% Similarity=0.371 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 003913 369 AFVYKMEAYAKIGEFMKSLEIFREMQERLGS 399 (787)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 399 (787)
+|+++|.+|++.|+++.|.++|++|.+.|++
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3444444444444444444444444444443
No 140
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.77 E-value=3.8e-05 Score=50.05 Aligned_cols=33 Identities=27% Similarity=0.518 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 003913 403 PAYHKIIELLCKAEETELTESLMKEFVETGMKP 435 (787)
Q Consensus 403 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 435 (787)
.+|+++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578889999999999999999999998888877
No 141
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.76 E-value=0.0063 Score=67.11 Aligned_cols=257 Identities=14% Similarity=0.126 Sum_probs=155.4
Q ss_pred cCHHHHHHHHH--HHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCC------
Q 003913 178 FDFALATKLAD--YMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGG------ 249 (787)
Q Consensus 178 ~~~~~~~~li~--~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g------ 249 (787)
-|..+--++++ .|...|+.+.|.+-.+-+.. ...|..|.+.|+ +..+++-|.-.+..|....|
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS------~~vW~nmA~McV---kT~RLDVAkVClGhm~~aRgaRAlR~ 794 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS------DSVWDNMASMCV---KTRRLDVAKVCLGHMKNARGARALRR 794 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHhh------hHHHHHHHHHhh---hhccccHHHHhhhhhhhhhhHHHHHH
Confidence 36667777765 46788999999998888764 578999999999 89999999888888764322
Q ss_pred --CCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcC
Q 003913 250 --YQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAG 327 (787)
Q Consensus 250 --~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g 327 (787)
-.|+..... +..++-.. |.+++|+.++++-.+.++ +- ..|...|.|++|+++-+.=-+..
T Consensus 795 a~q~~~e~eak--vAvLAieL-----gMlEeA~~lYr~ckR~DL---------lN--KlyQs~g~w~eA~eiAE~~DRiH 856 (1416)
T KOG3617|consen 795 AQQNGEEDEAK--VAVLAIEL-----GMLEEALILYRQCKRYDL---------LN--KLYQSQGMWSEAFEIAETKDRIH 856 (1416)
T ss_pred HHhCCcchhhH--HHHHHHHH-----hhHHHHHHHHHHHHHHHH---------HH--HHHHhcccHHHHHHHHhhcccee
Confidence 123222111 12222222 589999999988765332 22 56778888999888765433222
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH--HHHHHHHcCChHHHHH-HHHHHHHcCCCCCHHH
Q 003913 328 FEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVY--KMEAYAKIGEFMKSLE-IFREMQERLGSASVPA 404 (787)
Q Consensus 328 ~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~--li~~~~~~g~~~~A~~-~~~~m~~~g~~p~~~t 404 (787)
+ ..||..-..-+-..++.+.|.+.|++.-. ..++. |+. ....+++ +.+++. |...
T Consensus 857 L---r~Tyy~yA~~Lear~Di~~AleyyEK~~~-------hafev~rmL~------e~p~~~e~Yv~~~~------d~~L 914 (1416)
T KOG3617|consen 857 L---RNTYYNYAKYLEARRDIEAALEYYEKAGV-------HAFEVFRMLK------EYPKQIEQYVRRKR------DESL 914 (1416)
T ss_pred h---hhhHHHHHHHHHhhccHHHHHHHHHhcCC-------hHHHHHHHHH------hChHHHHHHHHhcc------chHH
Confidence 2 24555555555667888888888875422 12211 111 1111222 222221 3344
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Q 003913 405 YHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNA 484 (787)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~ 484 (787)
|.-....+-..|+.+.|+.+|....+ |.++++..|-.|+.++|-++-++ .-|......|...|-..
T Consensus 915 ~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~ 980 (1416)
T KOG3617|consen 915 YSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE-----SGDKAACYHLARMYEND 980 (1416)
T ss_pred HHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh-----cccHHHHHHHHHHhhhh
Confidence 44455555666777777777665543 45566666666666666666554 23555555666666666
Q ss_pred CCHHHHHHHHHHh
Q 003913 485 GNIEKAEEIFNHM 497 (787)
Q Consensus 485 g~~~~A~~l~~~m 497 (787)
|++.+|..+|.+.
T Consensus 981 g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 981 GDVVKAVKFFTRA 993 (1416)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666666554
No 142
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.70 E-value=0.034 Score=53.37 Aligned_cols=188 Identities=15% Similarity=0.178 Sum_probs=91.5
Q ss_pred CCCHHHHHHHHHHHHH---cC-CCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChH
Q 003913 310 NIDKERISLLKKEMQQ---AG-FEEGKEV-LLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFM 384 (787)
Q Consensus 310 ~g~~~~a~~l~~~m~~---~g-~~p~~~t-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 384 (787)
..+.+++++++.+|.. .| ..++..+ |--+.-+....|+.+.|...++.+...-+. +..+-..-.--+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~-S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPG-SKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhchh
Confidence 3446666666666643 23 4555543 445555556667777777777666655321 1111111112233346666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003913 385 KSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECL 464 (787)
Q Consensus 385 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 464 (787)
+|.++++.+.+.. +.|.++|--=+...-..|+.-+|++-+.+-.+. +..|...|.-|...|...|++++|.-.+++++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 6666666666553 234455544444444445444554444444432 23445555555555555555555555555544
Q ss_pred hcCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhhC
Q 003913 465 EKCRPNRTIYGIYLESLKNAG---NIEKAEEIFNHMHSD 500 (787)
Q Consensus 465 ~~~~p~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~ 500 (787)
=..|-+...+..+.+.+--.| +++-|.+.|.+..+.
T Consensus 182 l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 182 LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 333333444444444333222 334455555554443
No 143
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.68 E-value=0.0098 Score=57.42 Aligned_cols=172 Identities=15% Similarity=0.103 Sum_probs=98.5
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 003913 318 LLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERL 397 (787)
Q Consensus 318 ~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 397 (787)
++.+.+......-+......-...|++.|++++|.+...... +....-.=+..+.+..+.+-|.+.+++|.+-
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i- 166 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI- 166 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-
Confidence 344444444333343334444455667777777776655411 2233333355556666777777777777654
Q ss_pred CCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q 003913 398 GSASVPAYHKIIELLCK----AEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTI 473 (787)
Q Consensus 398 ~~p~~~t~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~ 473 (787)
-+..|.+-|..++.+ .+.+..|.-+|++|-+. ..|+..+.+....++...|++++|..+++..+.....++.+
T Consensus 167 --ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpet 243 (299)
T KOG3081|consen 167 --DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPET 243 (299)
T ss_pred --chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHH
Confidence 244455545544443 34566777777777653 46777777777777777777777777777777655556666
Q ss_pred HHHHHHHHHhcCCHHH-HHHHHHHhhh
Q 003913 474 YGIYLESLKNAGNIEK-AEEIFNHMHS 499 (787)
Q Consensus 474 ~~~li~~~~~~g~~~~-A~~l~~~m~~ 499 (787)
...+|..-...|.-.+ -.+.+.+++.
T Consensus 244 L~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 244 LANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 6666555555554433 3344444444
No 144
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.64 E-value=5.5e-05 Score=48.07 Aligned_cols=29 Identities=28% Similarity=0.483 Sum_probs=15.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 003913 509 SCNIILSAYLSSGDFVKAEKIYDLMCLKK 537 (787)
Q Consensus 509 t~~~li~~~~~~g~~~~A~~~~~~m~~~g 537 (787)
||++||++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555444
No 145
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=0.05 Score=52.31 Aligned_cols=189 Identities=13% Similarity=0.078 Sum_probs=140.1
Q ss_pred cCChHHHHHHHHHHHhC---C-CCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHhcCCh
Q 003913 345 EGDVEDAEKTWLRLLES---D-NGIPTP-AFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKI-IELLCKAEET 418 (787)
Q Consensus 345 ~g~~~~A~~~~~~m~~~---~-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-i~~~~~~g~~ 418 (787)
..+.++..+++.+++.. | ..++.. .|.-++-+...+|+.+.|...++++..+- |...-...| ..-+-..|+.
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhch
Confidence 45566666666666542 3 334443 34455667778899999999999998762 333211111 1124456899
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 003913 419 ELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMH 498 (787)
Q Consensus 419 ~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 498 (787)
++|.++++.+++.. +.|..+|--=+...-..|+.-+|++-+....+.+..|...|.-|...|...|++++|.-.++++.
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 99999999999876 66778888777777888888899999999999899999999999999999999999999999999
Q ss_pred hCCCCCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHcCCccCH
Q 003913 499 SDQTIGVNTRSCNIILSAYLSSG---DFVKAEKIYDLMCLKKYEIES 542 (787)
Q Consensus 499 ~~~~~~p~~~t~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~~~p 542 (787)
-.. |-+...|..+...+.-.| +++-|.++|.+.++ +.|
T Consensus 182 l~~--P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk----l~~ 222 (289)
T KOG3060|consen 182 LIQ--PFNPLYFQRLAEVLYTQGGAENLELARKYYERALK----LNP 222 (289)
T ss_pred HcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH----hCh
Confidence 864 446666666666554444 46678888888886 666
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.62 E-value=0.0041 Score=56.66 Aligned_cols=123 Identities=15% Similarity=0.258 Sum_probs=74.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH----HHHHHH
Q 003913 405 YHKIIELLCKAEETELTESLMKEFVETGMKPL---MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNR----TIYGIY 477 (787)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~----~~~~~l 477 (787)
|..++..+ ..++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+.... |+. ...-.|
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHH
Confidence 33333333 3566666666666666642 222 2233344566667777777777777776632 222 244456
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 003913 478 LESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLM 533 (787)
Q Consensus 478 i~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m 533 (787)
...+...|++++|+..++...... .....+......|.+.|++++|...|+..
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~---~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEA---FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcc---hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 677777788888888876654432 34456666777788888888888777653
No 147
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.62 E-value=0.00067 Score=55.97 Aligned_cols=94 Identities=22% Similarity=0.236 Sum_probs=58.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHc
Q 003913 440 YINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS 519 (787)
Q Consensus 440 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~ 519 (787)
+..+...+...|++++|...+....+..+.+...+..+...|...|++++|.+.|+...... +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CcchhHHHHHHHHHHH
Confidence 34455555666666666666666655444444566666666666677777777777666653 3344566666666777
Q ss_pred CCCHHHHHHHHHHHHH
Q 003913 520 SGDFVKAEKIYDLMCL 535 (787)
Q Consensus 520 ~g~~~~A~~~~~~m~~ 535 (787)
.|++++|...+.+..+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 7777777777666653
No 148
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.58 E-value=0.0012 Score=67.48 Aligned_cols=130 Identities=15% Similarity=0.168 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 003913 403 PAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLN-LGMHDRLHLAFSECLEKCRPNRTIYGIYLESL 481 (787)
Q Consensus 403 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~-~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~ 481 (787)
.+|..++...-+.+..+.|..+|.+.++.+ ..+..+|......-.+ .++.+.|..+|+..++..+.+...|...++.+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 467788888888888899999999988643 2334555555555333 56677799999999988888999999999999
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCCCH---HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 482 KNAGNIEKAEEIFNHMHSDQTIGVNT---RSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 482 ~~~g~~~~A~~l~~~m~~~~~~~p~~---~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
.+.|+.+.|..+|++.... ++++. ..|...+.-=.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999876 43333 5999999999999999999999999987
No 149
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.54 E-value=9e-05 Score=47.04 Aligned_cols=28 Identities=39% Similarity=0.802 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 003913 369 AFVYKMEAYAKIGEFMKSLEIFREMQER 396 (787)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 396 (787)
+|++||++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444444444444444444444444444
No 150
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.50 E-value=0.0013 Score=69.86 Aligned_cols=124 Identities=7% Similarity=-0.017 Sum_probs=92.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH
Q 003913 327 GFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLES--DNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPA 404 (787)
Q Consensus 327 g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 404 (787)
+...+......+++.+....+++++..++.+.... ....-..|..++|+.|.+.|..++|+++++.=...|+-||..|
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34556677777788877778888888877777665 2112233445788888888888888888888888888888888
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003913 405 YHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNL 450 (787)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~ 450 (787)
+|.||..+.+.|++..|.++..+|...+...+..|+..-+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888887777677777777777776665
No 151
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.46 E-value=0.0021 Score=52.84 Aligned_cols=94 Identities=18% Similarity=0.160 Sum_probs=54.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 003913 406 HKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAG 485 (787)
Q Consensus 406 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g 485 (787)
..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|.+.|....+..+.+..++..+...+...|
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 344455555566666666666555432 2223455555566666666666666666665544444556666666777777
Q ss_pred CHHHHHHHHHHhhhC
Q 003913 486 NIEKAEEIFNHMHSD 500 (787)
Q Consensus 486 ~~~~A~~l~~~m~~~ 500 (787)
++++|...+++..+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 777777777666543
No 152
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.43 E-value=0.0069 Score=55.17 Aligned_cols=86 Identities=9% Similarity=0.147 Sum_probs=37.4
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003913 340 RVCAKEGDVEDAEKTWLRLLESDNGIPT--PAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEE 417 (787)
Q Consensus 340 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 417 (787)
..+...|++++|...|+.+......+.. ...-.|...+...|++++|+..++...... .....+......|.+.|+
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~ 133 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGD 133 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCC
Confidence 4444455555555555555444322211 122223444455555555555554432221 122233344455555555
Q ss_pred hHHHHHHHHH
Q 003913 418 TELTESLMKE 427 (787)
Q Consensus 418 ~~~A~~l~~~ 427 (787)
.++|...|+.
T Consensus 134 ~~~A~~~y~~ 143 (145)
T PF09976_consen 134 YDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHH
Confidence 5555555543
No 153
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.39 E-value=0.0023 Score=53.20 Aligned_cols=75 Identities=11% Similarity=0.159 Sum_probs=36.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003913 339 LRVCAKEGDVEDAEKTWLRLLESDN-GIPTPAFVYKMEAYAKIG--------EFMKSLEIFREMQERLGSASVPAYHKII 409 (787)
Q Consensus 339 i~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~t~~~li 409 (787)
|..|...+++.....+|+.+++.|+ .|++.+|+.++.+.++.. ++-+.+.+|+.|...+++|+..||+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3334444555555555555555555 445555555544444321 2233444555555555555555555555
Q ss_pred HHHH
Q 003913 410 ELLC 413 (787)
Q Consensus 410 ~~~~ 413 (787)
..+.
T Consensus 112 ~~Ll 115 (120)
T PF08579_consen 112 GSLL 115 (120)
T ss_pred HHHH
Confidence 5443
No 154
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.38 E-value=0.0037 Score=52.03 Aligned_cols=78 Identities=13% Similarity=0.205 Sum_probs=49.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003913 372 YKMEAYAKIGEFMKSLEIFREMQERLG-SASVPAYHKIIELLCKAE--------ETELTESLMKEFVETGMKPLMPSYIN 442 (787)
Q Consensus 372 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~li~~~~~~g--------~~~~A~~l~~~m~~~g~~p~~~t~~~ 442 (787)
..|.-+...+++.....+|+.++..|+ .|++.+|+.++.+.++.. ++-+.+.+|+.|+..+++|+..||+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 345555556777777777777777777 777777777777666543 23344556666666666666666666
Q ss_pred HHHHHHh
Q 003913 443 LTNMYLN 449 (787)
Q Consensus 443 li~~~~~ 449 (787)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 6655543
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.37 E-value=0.0036 Score=54.62 Aligned_cols=97 Identities=15% Similarity=0.061 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-CCCHHHHHHHH
Q 003913 439 SYINLTNMYLNLGMHDRLHLAFSECLEKCRPN---RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTI-GVNTRSCNIIL 514 (787)
Q Consensus 439 t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~-~p~~~t~~~li 514 (787)
++..+...+.+.|++++|...|..+.+..+.+ ...+..+...+.+.|++++|...|+.+.....- +....++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 44555556666666666666666665422221 345555666677777777777777766654200 01134566666
Q ss_pred HHHHcCCCHHHHHHHHHHHHH
Q 003913 515 SAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~~ 535 (787)
.++.+.|+.++|...++++.+
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHH
Confidence 666777777777777777765
No 156
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.33 E-value=0.0027 Score=67.45 Aligned_cols=120 Identities=15% Similarity=0.179 Sum_probs=69.1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCHHHHHH
Q 003913 400 ASVPAYHKIIELLCKAEETELTESLMKEFVET--GMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE-KCRPNRTIYGI 476 (787)
Q Consensus 400 p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-~~~p~~~~~~~ 476 (787)
.+.+....+++.+....+++.+..++.+.+.. ....-..|..++|+.|.+.|..+.+..++..=.. |+-||..++|.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 34445555555555555666666666655543 1112233445666666666666666666665555 66666666666
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcC
Q 003913 477 YLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSS 520 (787)
Q Consensus 477 li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~ 520 (787)
|++.+.+.|++..|.++...|..++ .-.+..|+..-+.+|.+-
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe-~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQE-EFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhh-ccCCchHHHHHHHHHHHh
Confidence 6666666666666666666666555 334555555555544443
No 157
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.29 E-value=0.52 Score=53.50 Aligned_cols=384 Identities=13% Similarity=0.095 Sum_probs=229.1
Q ss_pred CcchHHHHH---HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHH
Q 003913 144 QEDGTYLAV---HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHI 220 (787)
Q Consensus 144 p~~~t~~~~---~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~ 220 (787)
|+.....++ ...|.|+.++|..+++.....+ ..|..+...+-.+|-..++.++|..++++.... .|+..-...
T Consensus 40 Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~ 115 (932)
T KOG2053|consen 40 PNALYAKVLKALSLFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYH 115 (932)
T ss_pred CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHH
Confidence 555544444 6779999999999988887765 448899999999999999999999999999876 577777777
Q ss_pred HHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCC----hhhHHHHHHHHHHHHHcCCccCHH
Q 003913 221 LIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLS----KYYLQQAEFIFHNLLTSGLEIQKD 296 (787)
Q Consensus 221 li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~ 296 (787)
+..+|+ |.+.+.+-.+.=-+|-+ .+.-+.+.|-++++.......... .--+.-|.+.++.+++.+- +-..
T Consensus 116 lFmayv---R~~~yk~qQkaa~~LyK--~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~g-k~~s 189 (932)
T KOG2053|consen 116 LFMAYV---REKSYKKQQKAALQLYK--NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKG-KIES 189 (932)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHH--hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCC-ccch
Confidence 888888 77877765554444444 245566777777776665432111 1234567778888876651 2122
Q ss_pred HHHHHHHHhhhccCCCHHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003913 297 IYSGLIWLHSYQDNIDKERISLLKK-EMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKME 375 (787)
Q Consensus 297 ~~~~li~~~~~~~~g~~~~a~~l~~-~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 375 (787)
.-...+........|++++|.+++. ...+.-..-+...-+.-+..+...+++.+..++-.++..+|.. . |...++
T Consensus 190 ~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D--d--y~~~~~ 265 (932)
T KOG2053|consen 190 EAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND--D--YKIYTD 265 (932)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc--c--hHHHHH
Confidence 3333333456677888999999984 3333323335555567788888999999999999999998853 2 433333
Q ss_pred HHHH----------------cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---hcCChHHHHHHHHHHHHcCCCC-
Q 003913 376 AYAK----------------IGEFMKSLEIFREMQERLGSASVPAYHKIIELLC---KAEETELTESLMKEFVETGMKP- 435 (787)
Q Consensus 376 ~~~~----------------~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~---~~g~~~~A~~l~~~m~~~g~~p- 435 (787)
.+++ .+..+...+...+-..... .-.|-+-+.+.. ..|+.+++...|-+- -|-+|
T Consensus 266 sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~---Rgp~LA~lel~kr~~~~gd~ee~~~~y~~k--fg~kpc 340 (932)
T KOG2053|consen 266 SVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKS---RGPYLARLELDKRYKLIGDSEEMLSYYFKK--FGDKPC 340 (932)
T ss_pred HHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccc---cCcHHHHHHHHHHhcccCChHHHHHHHHHH--hCCCcH
Confidence 2222 2223333333332222111 112222222222 335555543332211 11111
Q ss_pred -----------------------------CHH-------HHHHHHHHHHhcCC-----HHHHHHHHHHHH----hc----
Q 003913 436 -----------------------------LMP-------SYINLTNMYLNLGM-----HDRLHLAFSECL----EK---- 466 (787)
Q Consensus 436 -----------------------------~~~-------t~~~li~~~~~~g~-----~~~a~~~~~~m~----~~---- 466 (787)
+.. .+...+..-.-.|. -+.-...+.++. .|
T Consensus 341 c~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~ 420 (932)
T KOG2053|consen 341 CAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLS 420 (932)
T ss_pred hHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhcccccc
Confidence 100 01222222222221 112222222221 12
Q ss_pred --CCCCH---------HHHHHHHHHHHhcCCHH---HHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 003913 467 --CRPNR---------TIYGIYLESLKNAGNIE---KAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDL 532 (787)
Q Consensus 467 --~~p~~---------~~~~~li~~~~~~g~~~---~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~ 532 (787)
+-|.. .+-+.|++.+-+.++.. +|+-+++.-.... +-|..+--.+|+.|+--|-...|.++|..
T Consensus 421 K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s--~hnf~~KLlLiriY~~lGa~p~a~~~y~t 498 (932)
T KOG2053|consen 421 KDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS--PHNFQTKLLLIRIYSYLGAFPDAYELYKT 498 (932)
T ss_pred ccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC--CccHHHHHHHHHHHHHhcCChhHHHHHHh
Confidence 12221 24578888998888654 6777777777664 45677777889999999999999999999
Q ss_pred HHHcCCccCHHHHHHHHH
Q 003913 533 MCLKKYEIESAWMEKLDY 550 (787)
Q Consensus 533 m~~~g~~~~p~~~~~l~~ 550 (787)
|--+. +.-|++.++..
T Consensus 499 LdIK~--IQ~DTlgh~~~ 514 (932)
T KOG2053|consen 499 LDIKN--IQTDTLGHLIF 514 (932)
T ss_pred cchHH--hhhccchHHHH
Confidence 87655 44455554433
No 158
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.28 E-value=0.0029 Score=59.46 Aligned_cols=105 Identities=15% Similarity=0.218 Sum_probs=64.4
Q ss_pred CCCHHHHHHHHHHHHh-----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH
Q 003913 329 EEGKEVLLSVLRVCAK-----EGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVP 403 (787)
Q Consensus 329 ~p~~~t~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 403 (787)
.-|..+|..++..|.+ .|.++-....+..|.+-|+.-|..+|+.|++.+=+ |++- -..+|+.+-
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F--------- 112 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF--------- 112 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh---------
Confidence 3467777777777764 47788888888888888888888888888887765 2221 111111111
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003913 404 AYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGM 452 (787)
Q Consensus 404 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~ 452 (787)
.-| ..+.+-|++++++|...|+-||..|+..|++.+++.+.
T Consensus 113 ------~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 ------MHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ------ccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 001 12334556666666666666666666666666665553
No 159
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.27 E-value=0.01 Score=51.78 Aligned_cols=95 Identities=17% Similarity=0.078 Sum_probs=48.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHH
Q 003913 406 HKIIELLCKAEETELTESLMKEFVETGM--KPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCR---PNRTIYGIYLES 480 (787)
Q Consensus 406 ~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~---p~~~~~~~li~~ 480 (787)
..+...+.+.|++++|...+..+.+..- ......+..+..++.+.|+++.|...|+.+....+ ....++..+...
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 3344444555555555555555544210 00123444455555555555555555555554211 123445555566
Q ss_pred HHhcCCHHHHHHHHHHhhhC
Q 003913 481 LKNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 481 ~~~~g~~~~A~~l~~~m~~~ 500 (787)
+.+.|+.++|...++++.+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHhCChHHHHHHHHHHHHH
Confidence 66666666666666666665
No 160
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.15 E-value=0.0053 Score=57.74 Aligned_cols=103 Identities=8% Similarity=0.114 Sum_probs=74.2
Q ss_pred CCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 003913 365 IPTPAFVYKMEAYAKI-----GEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPS 439 (787)
Q Consensus 365 ~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 439 (787)
.+..+|..+|+.|.+. |.++=....+..|.+-|+.-|..+|+.||..+=+ |.+- -..+|+.+--.
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~h-------- 114 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFMH-------- 114 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhcc--------
Confidence 3677888888888764 6777777788888888888888888888887765 2221 11222222210
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcCC
Q 003913 440 YINLTNMYLNLGMHDRLHLAFSECLE-KCRPNRTIYGIYLESLKNAGN 486 (787)
Q Consensus 440 ~~~li~~~~~~g~~~~a~~~~~~m~~-~~~p~~~~~~~li~~~~~~g~ 486 (787)
--.+-+-|++++++|.. |+-||..++..|++.+++.+.
T Consensus 115 ---------yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 ---------YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ---------CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11345679999999998 999999999999999988764
No 161
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.14 E-value=0.018 Score=54.27 Aligned_cols=85 Identities=12% Similarity=0.101 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003913 369 AFVYKMEAYAKIGEFMKSLEIFREMQERLGSAS--VPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNM 446 (787)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~ 446 (787)
.+..+...|...|++++|...|++.......++ ...+..+...+.+.|++++|...+.+..+.. +-+...+..+..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 344455555555555555555555544322111 2344444555555555555555555544421 1123333444444
Q ss_pred HHhcCCHH
Q 003913 447 YLNLGMHD 454 (787)
Q Consensus 447 ~~~~g~~~ 454 (787)
|...|+..
T Consensus 116 ~~~~g~~~ 123 (172)
T PRK02603 116 YHKRGEKA 123 (172)
T ss_pred HHHcCChH
Confidence 44444433
No 162
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.12 E-value=0.0016 Score=63.95 Aligned_cols=93 Identities=16% Similarity=0.130 Sum_probs=58.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHH
Q 003913 445 NMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFV 524 (787)
Q Consensus 445 ~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~ 524 (787)
+-..+.+++.+|+..|.+.++-.+.|.+-|..-..+|++.|.++.|++-.+..+..+ +-...+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD--p~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID--PHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHccCcHH
Confidence 345566666666666666666555666666666666666666666666666666643 223456666666666666666
Q ss_pred HHHHHHHHHHHcCCccCHH
Q 003913 525 KAEKIYDLMCLKKYEIESA 543 (787)
Q Consensus 525 ~A~~~~~~m~~~g~~~~p~ 543 (787)
+|++.|++.++ ++|+
T Consensus 167 ~A~~aykKaLe----ldP~ 181 (304)
T KOG0553|consen 167 EAIEAYKKALE----LDPD 181 (304)
T ss_pred HHHHHHHhhhc----cCCC
Confidence 66666665554 5555
No 163
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.12 E-value=0.011 Score=62.78 Aligned_cols=87 Identities=9% Similarity=-0.031 Sum_probs=45.6
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHH
Q 003913 447 YLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKA 526 (787)
Q Consensus 447 ~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A 526 (787)
+...|++++|+..|.+.++..+.+...|..+..+|.+.|++++|+..+++++... +.+...|..+..+|...|++++|
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD--PSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhCCHHHH
Confidence 3444555555555555554444445555555555555555555555555555543 23444555555555555555555
Q ss_pred HHHHHHHHH
Q 003913 527 EKIYDLMCL 535 (787)
Q Consensus 527 ~~~~~~m~~ 535 (787)
+..|++.++
T Consensus 90 ~~~~~~al~ 98 (356)
T PLN03088 90 KAALEKGAS 98 (356)
T ss_pred HHHHHHHHH
Confidence 555555554
No 164
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.11 E-value=0.0048 Score=65.53 Aligned_cols=102 Identities=9% Similarity=0.004 Sum_probs=87.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCH
Q 003913 408 IIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNI 487 (787)
Q Consensus 408 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~ 487 (787)
-...+...|++++|..+|++.++.. +-+...|..+..+|.+.|++++|...++.+++..+.+...|..+..+|...|++
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 3566778899999999999999854 446788999999999999999999999999987677889999999999999999
Q ss_pred HHHHHHHHHhhhCCCCCCCHHHHHHH
Q 003913 488 EKAEEIFNHMHSDQTIGVNTRSCNII 513 (787)
Q Consensus 488 ~~A~~l~~~m~~~~~~~p~~~t~~~l 513 (787)
++|+..|++..+.+ |+.......
T Consensus 87 ~eA~~~~~~al~l~---P~~~~~~~~ 109 (356)
T PLN03088 87 QTAKAALEKGASLA---PGDSRFTKL 109 (356)
T ss_pred HHHHHHHHHHHHhC---CCCHHHHHH
Confidence 99999999999864 554443333
No 165
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.05 E-value=0.021 Score=51.45 Aligned_cols=97 Identities=7% Similarity=-0.103 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHH
Q 003913 438 PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAY 517 (787)
Q Consensus 438 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~ 517 (787)
...-.+..-+...|++++|..+|+.+..-.+-+..-|-.|.-++-..|++++|+..|....... +-|...+-.+..++
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~--~ddp~~~~~ag~c~ 113 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK--IDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCchHHHHHHHHH
Confidence 3445556667788999999999998877556677888888888888999999999999988875 46788888999999
Q ss_pred HcCCCHHHHHHHHHHHHHc
Q 003913 518 LSSGDFVKAEKIYDLMCLK 536 (787)
Q Consensus 518 ~~~g~~~~A~~~~~~m~~~ 536 (787)
...|+.+.|.+.|+..+..
T Consensus 114 L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999988763
No 166
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.04 E-value=0.0013 Score=53.39 Aligned_cols=80 Identities=18% Similarity=0.159 Sum_probs=46.1
Q ss_pred cCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 003913 450 LGMHDRLHLAFSECLEKCR--PNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAE 527 (787)
Q Consensus 450 ~g~~~~a~~~~~~m~~~~~--p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~ 527 (787)
.|+++.|+.+++++.+..+ ++...+-.+..+|.+.|++++|..++++ .+.+ +.+......+..+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--PSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--HCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--CCCHHHHHHHHHHHHHhCCHHHHH
Confidence 3566666666666665222 2344455567777777777777777766 2222 123344444466677777777777
Q ss_pred HHHHH
Q 003913 528 KIYDL 532 (787)
Q Consensus 528 ~~~~~ 532 (787)
++|++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77664
No 167
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.94 E-value=0.0022 Score=52.13 Aligned_cols=80 Identities=18% Similarity=0.179 Sum_probs=32.9
Q ss_pred CChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003913 416 EETELTESLMKEFVETGM-KPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIF 494 (787)
Q Consensus 416 g~~~~A~~l~~~m~~~g~-~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~ 494 (787)
|+++.|+.+++++.+..- .++...+..+..+|.+.|++++|..+++. .+..+.+....-.+..+|.+.|++++|+++|
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 444444444444444321 11222333344455555555555555544 2111122233333345555555555555555
Q ss_pred HH
Q 003913 495 NH 496 (787)
Q Consensus 495 ~~ 496 (787)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 43
No 168
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.90 E-value=0.048 Score=60.62 Aligned_cols=66 Identities=17% Similarity=0.099 Sum_probs=53.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 467 CRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 467 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
.+.+..+|.++.-.+...|++++|...+++....+ |+...|..+...|...|+.++|.+.+++..+
T Consensus 416 ~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~---ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 416 LNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE---MSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34456777777766777788999999999888864 6888888888888889999999988888875
No 169
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.90 E-value=0.016 Score=57.26 Aligned_cols=100 Identities=17% Similarity=0.095 Sum_probs=84.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHH
Q 003913 409 IELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIE 488 (787)
Q Consensus 409 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~ 488 (787)
..-+.+.+++++|+..|.+.++.. +-|.+-|..=..+|++.|.++.|++-.+..+.-.+-...+|..|..+|...|+++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence 355678899999999999999843 3467888889999999999999999888887655556789999999999999999
Q ss_pred HHHHHHHHhhhCCCCCCCHHHHHH
Q 003913 489 KAEEIFNHMHSDQTIGVNTRSCNI 512 (787)
Q Consensus 489 ~A~~l~~~m~~~~~~~p~~~t~~~ 512 (787)
+|++.|++..+. .|+-.+|-.
T Consensus 167 ~A~~aykKaLel---dP~Ne~~K~ 187 (304)
T KOG0553|consen 167 EAIEAYKKALEL---DPDNESYKS 187 (304)
T ss_pred HHHHHHHhhhcc---CCCcHHHHH
Confidence 999999999985 577666643
No 170
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.89 E-value=0.023 Score=58.13 Aligned_cols=130 Identities=8% Similarity=0.160 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003913 369 AFVYKMEAYAKIGEFMKSLEIFREMQERL-GSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMY 447 (787)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~ 447 (787)
+|..++...-+.+.++.|..+|.+..+.+ +..++....+++. +...++.+.|..+|+...+. +..+...+...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555666666666666666666665332 1222222222222 22234455566666666653 344555566666666
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 003913 448 LNLGMHDRLHLAFSECLEKCRPNR---TIYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 448 ~~~g~~~~a~~~~~~m~~~~~p~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (787)
.+.++.+.|..+|+..+..+.++. ..|...++-=.+.|+++.+.++.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 666677777777776665433333 57777888778888888888888888775
No 171
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.88 E-value=0.0035 Score=48.61 Aligned_cols=64 Identities=19% Similarity=0.155 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Q 003913 470 NRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSG-DFVKAEKIYDLMCL 535 (787)
Q Consensus 470 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g-~~~~A~~~~~~m~~ 535 (787)
+..+|..+...+.+.|++++|+..|++.++.. +-+...|..+..+|.+.| ++++|++.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34566777777777777777777777777764 445667777777777777 57777777777665
No 172
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.87 E-value=0.05 Score=47.18 Aligned_cols=90 Identities=20% Similarity=0.148 Sum_probs=47.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHhc
Q 003913 410 ELLCKAEETELTESLMKEFVETGMKPL--MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRP---NRTIYGIYLESLKNA 484 (787)
Q Consensus 410 ~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p---~~~~~~~li~~~~~~ 484 (787)
.++-..|+.++|..+|++....|+... ...+..+...|...|++++|..+++......+. +......+..++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 344455666666666666665554433 234445555556666666666666655542222 222223333455556
Q ss_pred CCHHHHHHHHHHhhh
Q 003913 485 GNIEKAEEIFNHMHS 499 (787)
Q Consensus 485 g~~~~A~~l~~~m~~ 499 (787)
|+.++|++.+-....
T Consensus 89 gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 89 GRPKEALEWLLEALA 103 (120)
T ss_pred CCHHHHHHHHHHHHH
Confidence 666666666655443
No 173
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.85 E-value=0.044 Score=51.58 Aligned_cols=86 Identities=14% Similarity=0.052 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 003913 404 AYHKIIELLCKAEETELTESLMKEFVETGMKPL--MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESL 481 (787)
Q Consensus 404 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~ 481 (787)
.|..+...+...|++++|...|++..+....+. ...+..+...|.+.|++++|...+.+..+..+.+...+..+...|
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 344555555555566666655555554321111 234455555555555555555555555443333444444444455
Q ss_pred HhcCCHHH
Q 003913 482 KNAGNIEK 489 (787)
Q Consensus 482 ~~~g~~~~ 489 (787)
...|+...
T Consensus 117 ~~~g~~~~ 124 (172)
T PRK02603 117 HKRGEKAE 124 (172)
T ss_pred HHcCChHh
Confidence 55444333
No 174
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.84 E-value=0.0055 Score=47.31 Aligned_cols=62 Identities=13% Similarity=0.192 Sum_probs=40.6
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHH
Q 003913 449 NLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNII 513 (787)
Q Consensus 449 ~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~l 513 (787)
+.|++++|.+.|+.+....+-+...+..+..+|.+.|++++|.++++++.... |+...|..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~---~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD---PDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG---TTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---cCHHHHHHH
Confidence 45667777777777666556677777777777777777777777777777653 554444443
No 175
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.78 E-value=0.031 Score=50.34 Aligned_cols=88 Identities=9% Similarity=-0.050 Sum_probs=41.1
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHH
Q 003913 411 LLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKA 490 (787)
Q Consensus 411 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A 490 (787)
-+...|++++|..+|+.+.... .-+..-|..|.-+|-..|++++|+..|.....-.+-|+..+-.+..+|...|+.+.|
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A 122 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYA 122 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHH
Confidence 3444455555555555444422 122333444444444445555555555554442234444555555555555555555
Q ss_pred HHHHHHhhh
Q 003913 491 EEIFNHMHS 499 (787)
Q Consensus 491 ~~l~~~m~~ 499 (787)
.+.|+..+.
T Consensus 123 ~~aF~~Ai~ 131 (157)
T PRK15363 123 IKALKAVVR 131 (157)
T ss_pred HHHHHHHHH
Confidence 555554443
No 176
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.76 E-value=0.23 Score=51.01 Aligned_cols=167 Identities=17% Similarity=0.210 Sum_probs=95.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003913 338 VLRVCAKEGDVEDAEKTWLRLLESDNGIP-----TPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELL 412 (787)
Q Consensus 338 li~~~~~~g~~~~A~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 412 (787)
....|-..|++++|.+.|.+..+.....+ ...|.....+|-+. ++++|.+.++ ..+..|
T Consensus 41 Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~---------------~A~~~y 104 (282)
T PF14938_consen 41 AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYE---------------KAIEIY 104 (282)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHH---------------HHHHHH
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHH---------------HHHHHH
Confidence 34456677888887777765533210000 11122222232222 4444444443 344556
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHh--cCCCC----HHHHHHHHHHHHhcC
Q 003913 413 CKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNL-GMHDRLHLAFSECLE--KCRPN----RTIYGIYLESLKNAG 485 (787)
Q Consensus 413 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~-g~~~~a~~~~~~m~~--~~~p~----~~~~~~li~~~~~~g 485 (787)
...|++..|-.++.++- ..|... |+++.|.+.|.+..+ ..... ..++..+...+.+.|
T Consensus 105 ~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~ 169 (282)
T PF14938_consen 105 REAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLG 169 (282)
T ss_dssp HHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT
T ss_pred HhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhC
Confidence 77777777766555543 455555 788888888888765 11112 245667788899999
Q ss_pred CHHHHHHHHHHhhhCCC----CCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 486 NIEKAEEIFNHMHSDQT----IGVNTR-SCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 486 ~~~~A~~l~~~m~~~~~----~~p~~~-t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
++++|.++|++...... .+.+.. .|...+-.+...||...|.+.|++...
T Consensus 170 ~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 170 RYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp -HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred CHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999876431 122232 334445567778999999999999885
No 177
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.72 E-value=0.0056 Score=46.79 Aligned_cols=57 Identities=14% Similarity=0.192 Sum_probs=36.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 477 YLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 477 li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
+...+.+.|++++|.+.|++..+.. +-+...|..+...+.+.|++++|..+|+++++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455666677777777777777664 33556666666777777777777777777665
No 178
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.70 E-value=0.043 Score=51.44 Aligned_cols=94 Identities=15% Similarity=-0.005 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-C-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHH
Q 003913 437 MPSYINLTNMYLNLGMHDRLHLAFSECLEKC-R-P-NRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNII 513 (787)
Q Consensus 437 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~-~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~l 513 (787)
...|..+...+...|++++|...|....... . + ...+|..+...|...|++++|+..+++..... +....++..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~--~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN--PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHH
Confidence 4455666666677777777777777776521 1 1 23467777778888888888888888777653 3345566666
Q ss_pred HHHHH-------cCCCHHHHHHHHHH
Q 003913 514 LSAYL-------SSGDFVKAEKIYDL 532 (787)
Q Consensus 514 i~~~~-------~~g~~~~A~~~~~~ 532 (787)
...+. ..|++++|...+++
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 66666 67777655555544
No 179
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.66 E-value=0.036 Score=51.95 Aligned_cols=78 Identities=12% Similarity=-0.059 Sum_probs=36.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 003913 405 YHKIIELLCKAEETELTESLMKEFVETGMKP--LMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLK 482 (787)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~ 482 (787)
|..+...+...|++++|...|++.......+ ...++..+...|...|++++|...++...+..+....+++.+...|.
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 3344444444455555555555444321111 12345555555555555555555555555433333444555554444
No 180
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.57 E-value=0.0092 Score=45.56 Aligned_cols=59 Identities=17% Similarity=0.174 Sum_probs=45.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 003913 443 LTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ 501 (787)
Q Consensus 443 li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 501 (787)
+...+.+.|++++|...|+.+++..+-+...|..+...+.+.|++++|...|+++.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45567778888888888888887666677888888888888888888888888887753
No 181
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.55 E-value=0.28 Score=50.34 Aligned_cols=240 Identities=17% Similarity=0.237 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHH
Q 003913 236 EACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKER 315 (787)
Q Consensus 236 ~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~ 315 (787)
+|.+++.+..+. +++....| .++ .... .++++|..+|++.- ..|...+++++
T Consensus 2 ~a~~l~~~Aek~--lk~~~~~~-~~f---~~~~-----~~~e~Aa~~y~~Aa-----------------~~fk~~~~~~~ 53 (282)
T PF14938_consen 2 EAEELIKEAEKK--LKKSSGFF-SFF---GSKK-----PDYEEAADLYEKAA-----------------NCFKLAKDWEK 53 (282)
T ss_dssp HHHHHHHHHHHH--CS---TCC-CHH-----SC-----HHHHHHHHHHHHHH-----------------HHHHHTT-CHH
T ss_pred CHHHHHHHHHHH--hccccchh-hhc---CCCC-----CCHHHHHHHHHHHH-----------------HHHHHHhccch
Confidence 566777777664 44432222 111 2211 38889988888774 45556677888
Q ss_pred HHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 003913 316 ISLLKKEMQQAGFEEG-----KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIF 390 (787)
Q Consensus 316 a~~l~~~m~~~g~~p~-----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 390 (787)
|.+.|.+....-...+ ...|.....+|.+ +++++|.+. |...+..|...|++..|-+.+
T Consensus 54 A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~---------------~~~A~~~y~~~G~~~~aA~~~ 117 (282)
T PF14938_consen 54 AAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIEC---------------YEKAIEIYREAGRFSQAAKCL 117 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHH---------------HHHHHHHHHHCT-HHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHH---------------HHHHHHHHHhcCcHHHHHHHH
Confidence 8777765533211000 1112222222222 244444433 444567788888888887776
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHH----cCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003913 391 REMQERLGSASVPAYHKIIELLCKA-EETELTESLMKEFVE----TGMKPL--MPSYINLTNMYLNLGMHDRLHLAFSEC 463 (787)
Q Consensus 391 ~~m~~~g~~p~~~t~~~li~~~~~~-g~~~~A~~l~~~m~~----~g~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~m 463 (787)
.++-+ .|-.. |++++|.+.|++..+ .| .+. ..++..+...+.+.|++++|.++|+++
T Consensus 118 ~~lA~---------------~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~ 181 (282)
T PF14938_consen 118 KELAE---------------IYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEV 181 (282)
T ss_dssp HHHHH---------------HHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHH---------------HHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 65533 34444 677888887777665 22 111 345667778888899999999999888
Q ss_pred HhcC------CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCCC--HHHHHHHHHHHHc--CCCHHHHHHHHH
Q 003913 464 LEKC------RPNRT-IYGIYLESLKNAGNIEKAEEIFNHMHSDQ-TIGVN--TRSCNIILSAYLS--SGDFVKAEKIYD 531 (787)
Q Consensus 464 ~~~~------~p~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~~-~~~p~--~~t~~~li~~~~~--~g~~~~A~~~~~ 531 (787)
.... +.++. .|-..+-.+...|+...|.+.|++..... .+..+ ......||.+|-. ...+.+|+.-|+
T Consensus 182 ~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d 261 (282)
T PF14938_consen 182 AKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYD 261 (282)
T ss_dssp HHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHT
T ss_pred HHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHc
Confidence 7521 11222 23333445666789999999999887652 12222 3456667777754 234677777777
Q ss_pred HHHH
Q 003913 532 LMCL 535 (787)
Q Consensus 532 ~m~~ 535 (787)
.+.+
T Consensus 262 ~~~~ 265 (282)
T PF14938_consen 262 SISR 265 (282)
T ss_dssp TSS-
T ss_pred ccCc
Confidence 6664
No 182
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.53 E-value=0.19 Score=55.88 Aligned_cols=142 Identities=11% Similarity=0.052 Sum_probs=89.2
Q ss_pred CCCCHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhc--------CChHHHHHHHHHH
Q 003913 363 NGIPTPAFVYKMEAYAKIG-----EFMKSLEIFREMQERLGSAS-VPAYHKIIELLCKA--------EETELTESLMKEF 428 (787)
Q Consensus 363 ~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~--------g~~~~A~~l~~~m 428 (787)
...+...|...+.+..... ....|..+|++..+. .|+ ...|..+..++... ..+..+.+...+.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 3345666666666544322 245667777766654 333 23333332222221 1123333444433
Q ss_pred HHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCH
Q 003913 429 VET-GMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNT 507 (787)
Q Consensus 429 ~~~-g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~ 507 (787)
... ....+..+|..+.-.+...|++++|...+++.++. .|+...|..+...|...|+.++|.+.+++....+ |..
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L-~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~---P~~ 486 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL-EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR---PGE 486 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCC
Confidence 332 23345577877777777789999999999998873 3588899999999999999999999999998865 554
Q ss_pred HHH
Q 003913 508 RSC 510 (787)
Q Consensus 508 ~t~ 510 (787)
.||
T Consensus 487 pt~ 489 (517)
T PRK10153 487 NTL 489 (517)
T ss_pred chH
Confidence 454
No 183
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.47 E-value=0.49 Score=47.14 Aligned_cols=57 Identities=9% Similarity=0.129 Sum_probs=35.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 003913 442 NLTNMYLNLGMHDRLHLAFSECLE---KCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMH 498 (787)
Q Consensus 442 ~li~~~~~~g~~~~a~~~~~~m~~---~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 498 (787)
.+..-|.+.|.+..|..-++.+++ +.+........|+.+|...|..++|.++...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 445556666777777777777665 333344555666677777777777776665543
No 184
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.016 Score=59.39 Aligned_cols=166 Identities=13% Similarity=0.048 Sum_probs=115.1
Q ss_pred CCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHhhhCCCCCCCHHHH-
Q 003913 435 PLMPSYINL-TNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLES--LKNAGNIEKAEEIFNHMHSDQTIGVNTRSC- 510 (787)
Q Consensus 435 p~~~t~~~l-i~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~--~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~- 510 (787)
|...++-.| ..++.-.|+.++|..+-..+++....+. +..++++ +--.++.+.|...|++.+..+ |+...-
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~--~al~vrg~~~yy~~~~~ka~~hf~qal~ld---pdh~~sk 240 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNA--EALYVRGLCLYYNDNADKAINHFQQALRLD---PDHQKSK 240 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchh--HHHHhcccccccccchHHHHHHHhhhhccC---hhhhhHH
Confidence 333444433 2345567888888887777665333333 3333333 334678888888888888765 554322
Q ss_pred ------------HHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHH
Q 003913 511 ------------NIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGL 578 (787)
Q Consensus 511 ------------~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 578 (787)
.-=.+-..++|++.+|.+.|.+.+. ++|+. ..+++..|..
T Consensus 241 ~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~----idP~n------------------------~~~naklY~n 292 (486)
T KOG0550|consen 241 SASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN----IDPSN------------------------KKTNAKLYGN 292 (486)
T ss_pred hHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc----CCccc------------------------cchhHHHHHH
Confidence 2223334688999999999988775 77763 2345778888
Q ss_pred HhhhhhhccchhhcceeEE--EEEccCCcccHHHHHHHHHHchhhcCCCccccCCCC
Q 003913 579 LLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSFKVSDGND 633 (787)
Q Consensus 579 ll~~~~~~~~~~~a~~~~~--~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~ 633 (787)
...+..++|+..+|..-.. +.++|....++...++.|...++|++|.+-+.++.+
T Consensus 293 ra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 293 RALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred hHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888999999888877 788888888899999999999999999887754444
No 185
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.35 E-value=0.015 Score=44.98 Aligned_cols=64 Identities=20% Similarity=0.190 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhhC
Q 003913 437 MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAG-NIEKAEEIFNHMHSD 500 (787)
Q Consensus 437 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~ 500 (787)
..+|..+...+...|++++|+..|.+.++-.+.+...|..+..+|.+.| ++++|++.|++..+.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 4566666777777777777777777777655566777777777777777 577777777776653
No 186
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.35 E-value=1.1 Score=43.52 Aligned_cols=143 Identities=10% Similarity=0.036 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH---
Q 003913 368 PAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLT--- 444 (787)
Q Consensus 368 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li--- 444 (787)
.+.++++..+.-.|.+.-...++++..++..+-+.+....|.+.-.+.|+.+.|...|++..+..-+.|..+.+.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 44556777777778888888888888887666677777888888888888888888888776643344444444433
Q ss_pred --HHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHH
Q 003913 445 --NMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNII 513 (787)
Q Consensus 445 --~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~l 513 (787)
..|.-.+++..|...|.++....+.|+..-|.=.-.+.-.|+..+|++.++.|.... |...+-+++
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~---P~~~l~es~ 325 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD---PRHYLHESV 325 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC---CccchhhhH
Confidence 345556778888888888877555666665554444444688889999999888863 555555443
No 187
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.31 E-value=1.3 Score=44.09 Aligned_cols=180 Identities=11% Similarity=0.003 Sum_probs=105.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-
Q 003913 338 VLRVCAKEGDVEDAEKTWLRLLESDNGIPTPA--FVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCK- 414 (787)
Q Consensus 338 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~- 414 (787)
....+.+.|++++|.+.|+.+...-+...... .-.+..+|.+.+++++|...|++..+.-..-...-|.-.+.|.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 33344567777788777777777654332111 123566777778888888888777765322222233333444331
Q ss_pred -c---------------CC---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHH
Q 003913 415 -A---------------EE---TELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYG 475 (787)
Q Consensus 415 -~---------------g~---~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~ 475 (787)
. .+ ..+|...|+++++. -|+. .-..+|...+..+.... ...--
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~rl~~l~~~l---a~~e~ 179 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKRLVFLKDRL---AKYEL 179 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHHHHHHHHHH---HHHHH
Confidence 1 11 23455666666653 2332 22344444444333210 01112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCC-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 476 IYLESLKNAGNIEKAEEIFNHMHSDQT-IGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 476 ~li~~~~~~g~~~~A~~l~~~m~~~~~-~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
.+..-|.+.|.+..|..-|+.+.++-. .+........|+.+|...|..++|..+...+..
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 456778999999999999999998731 122345666888999999999999988776653
No 188
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.27 E-value=0.19 Score=43.52 Aligned_cols=87 Identities=17% Similarity=0.092 Sum_probs=39.7
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHH
Q 003913 375 EAYAKIGEFMKSLEIFREMQERLGSAS--VPAYHKIIELLCKAEETELTESLMKEFVETGMKPL----MPSYINLTNMYL 448 (787)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~li~~~~ 448 (787)
.++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..++++..... |+ ......+.-++.
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHH
Confidence 344445555555555555555444332 1233334445555555555555555554421 21 111122223444
Q ss_pred hcCCHHHHHHHHHHH
Q 003913 449 NLGMHDRLHLAFSEC 463 (787)
Q Consensus 449 ~~g~~~~a~~~~~~m 463 (787)
..|+.++|...+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 555555555555443
No 189
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.22 E-value=0.98 Score=41.53 Aligned_cols=125 Identities=10% Similarity=0.050 Sum_probs=62.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCHHHHHHH
Q 003913 400 ASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKC--RPNRTIYGIY 477 (787)
Q Consensus 400 p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~--~p~~~~~~~l 477 (787)
|++..--.|..++...|+..+|...|++...--..-|......+.++....++...|...++.+.+-. ...+.+.-.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 44444445555555666666666666555543333455555555555555666666666555554410 1112223334
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 003913 478 LESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAE 527 (787)
Q Consensus 478 i~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~ 527 (787)
...|...|+..+|+.-|+...... |+...-.-....+.+.|+.++|.
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~y---pg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISYY---PGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHhC---CCHHHHHHHHHHHHHhcchhHHH
Confidence 455556666666666666665542 33332222233344555444443
No 190
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.19 E-value=0.9 Score=41.77 Aligned_cols=133 Identities=13% Similarity=0.071 Sum_probs=66.3
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC---CCCCHHHH
Q 003913 329 EEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERL---GSASVPAY 405 (787)
Q Consensus 329 ~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~ 405 (787)
.|++.--..|..+....|+..+|...|++...--+.-|....-.+..+....++...|...++.+-+.. -.||. .
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~--~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG--H 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--h
Confidence 444444445555566666666666666655543333344445555555555566666666655554431 12222 2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003913 406 HKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE 465 (787)
Q Consensus 406 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 465 (787)
-.+...|...|...+|..-|+.... .-|+...-.-....+.+.|+.+++..-+..+.+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 2344555555555555555555554 234443333334444555555555444444433
No 191
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.16 E-value=0.018 Score=44.34 Aligned_cols=52 Identities=19% Similarity=0.354 Sum_probs=29.2
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 003913 344 KEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQER 396 (787)
Q Consensus 344 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 396 (787)
+.|++++|.++|+.+.+..+. +...+..+..+|.+.|++++|..+++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445566666666666555433 4455555666666666666666666665544
No 192
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.13 E-value=0.0012 Score=66.89 Aligned_cols=127 Identities=7% Similarity=-0.135 Sum_probs=81.4
Q ss_pred HHHHHHHhhhhhhccchhhcceeEE--EEEc------cCCcccHHHHHHHHHHchhhcCCCccccCCCCC------cceE
Q 003913 573 ENLIGLLLGGLCIESDEKRKRHMIR--FQFN------ENSRMHSVLRRYLYDQYHEWLHPSFKVSDGNDD------IPYK 638 (787)
Q Consensus 573 ~~~~~~ll~~~~~~~~~~~a~~~~~--~~~~------p~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~------~p~~ 638 (787)
-..|+.|.+.+...|+++.|+..++ +++. ...-.++..|++.|.-.|+++.|++.+...... ....
T Consensus 195 GRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vE 274 (639)
T KOG1130|consen 195 GRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVE 274 (639)
T ss_pred cchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHH
Confidence 4578889999999999999988876 2221 122346888999999999999998887432211 1111
Q ss_pred EeeeccchHHHHHHhhccCcccccccch--hh---cCChhHHHHHhhcCCcccCCCcEEEEccCCHHHHHHHHHH
Q 003913 639 YSTISHPYFCFYADKFWPKGRLVIPKLI--HR---WLTPRALAYWFMYGGHRTSVGDILLKLKVSSEGIALVFKT 708 (787)
Q Consensus 639 ~~t~~~~~~~~~~~g~~~~a~~~~~~mi--~~---gl~P~~lay~~m~~g~~~~~g~~~~~~~g~~~e~~~l~~~ 708 (787)
..+-.++...|..-..+++|+.++.+=+ .. ...-...+||++..++ +.-|.++.|+.+...
T Consensus 275 AQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~---------~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 275 AQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAF---------NALGEHRKALYFAEL 340 (639)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH---------HhhhhHHHHHHHHHH
Confidence 1122234456666777788887655422 11 1334578899999994 444666777665544
No 193
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.05 E-value=0.055 Score=49.27 Aligned_cols=71 Identities=15% Similarity=0.181 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-----cCCccCHHH
Q 003913 472 TIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL-----KKYEIESAW 544 (787)
Q Consensus 472 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~~~p~~ 544 (787)
.+...++..+...|++++|..+.+.+.... |-|...|..+|.+|...|+..+|.++|+++.+ -|+.|+|.+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d--P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD--PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 455667777888889999999999888875 56788888899999999999999888888753 266666655
No 194
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.98 E-value=0.33 Score=48.46 Aligned_cols=99 Identities=6% Similarity=-0.003 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 003913 401 SVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNL---GMHDRLHLAFSECLEKCRPNRTIYGIY 477 (787)
Q Consensus 401 ~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~---g~~~~a~~~~~~m~~~~~p~~~~~~~l 477 (787)
|...|-.|..+|...|+...|..-|.+..+.- .+|...+..+..++... ....++..+|+++++..+-|+.+-..|
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 44455555555555555555555555544421 22233333333332221 123344445555444444444444444
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhC
Q 003913 478 LESLKNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 478 i~~~~~~g~~~~A~~l~~~m~~~ 500 (787)
...+...|++.+|...|+.|.+.
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhc
Confidence 44555555555555555555544
No 195
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.32 Score=48.57 Aligned_cols=101 Identities=19% Similarity=0.207 Sum_probs=88.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhhCCCCCCCHHHH
Q 003913 434 KPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAG---NIEKAEEIFNHMHSDQTIGVNTRSC 510 (787)
Q Consensus 434 ~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~~~~~p~~~t~ 510 (787)
+-|...|-.|...|...|+.+.|...|....+--++|...+..+..++.... ...+|..+|+++...+ +-|+.+-
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D--~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD--PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC--CccHHHH
Confidence 5578999999999999999999999999999877788888888887776643 4678999999999986 5677777
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHc
Q 003913 511 NIILSAYLSSGDFVKAEKIYDLMCLK 536 (787)
Q Consensus 511 ~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (787)
.-|..++...|++.+|...|+.|...
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 78888999999999999999999974
No 196
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.75 E-value=0.18 Score=50.78 Aligned_cols=97 Identities=14% Similarity=0.104 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-CCCHHHHHHHH
Q 003913 439 SYINLTNMYLNLGMHDRLHLAFSECLEKCRPN---RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTI-GVNTRSCNIIL 514 (787)
Q Consensus 439 t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~-~p~~~t~~~li 514 (787)
.|...+..+.+.|++++|...|+.+++..+-+ ..++-.+...|...|++++|...|+.+.+...- +.....+..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 34444444445566666666666666533222 245556667777777777777777777654200 01133444455
Q ss_pred HHHHcCCCHHHHHHHHHHHHH
Q 003913 515 SAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~~ 535 (787)
..+...|+.++|.++|++.++
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 566677777777777777765
No 197
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.72 E-value=0.039 Score=43.90 Aligned_cols=62 Identities=15% Similarity=0.209 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003913 473 IYGIYLESLKNAGNIEKAEEIFNHMHSD----QTIGVN-TRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (787)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (787)
+|+.+...|...|++++|+..|++..+. |.-.|+ ..+++.+...|...|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555555555555555555554421 101122 4456666666666666666666666554
No 198
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.65 E-value=1.1 Score=43.48 Aligned_cols=47 Identities=17% Similarity=0.084 Sum_probs=24.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCCH----HHHHHHHHHHHcCCCHHHH
Q 003913 477 YLESLKNAGNIEKAEEIFNHMHSDQTIGVNT----RSCNIILSAYLSSGDFVKA 526 (787)
Q Consensus 477 li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~----~t~~~li~~~~~~g~~~~A 526 (787)
+..-|.+.|.+..|..-++.++++- |+. ...-.|+.+|.+.|..+.|
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~y---p~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENY---PDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHS---TTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHC---CCCchHHHHHHHHHHHHHHhCChHHH
Confidence 3455666666666666666666652 332 2345555666666665533
No 199
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.62 E-value=0.63 Score=47.66 Aligned_cols=139 Identities=14% Similarity=0.183 Sum_probs=83.3
Q ss_pred hhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcC---CcCCCHHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHcCCCC
Q 003913 196 FAKCRDIFDDIINQGRVPSEMTFHILIVAYLSA---PVQGCLDEACSIYNRMIQLGGY--QPRPSLHNSLFRALVSKPGG 270 (787)
Q Consensus 196 ~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~---~~~g~~~~A~~l~~~m~~~~g~--~pd~~t~~~ll~~~~~~~~~ 270 (787)
+.+...+++.|.+.|...+..+|-+........ .......+|..+|+.|++.+.+ .++.+.+..+|..-....
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~~~~~~-- 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAMTSEDV-- 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhcccccH--
Confidence 455667888899999888877776643333210 0113467789999999987533 456677777776522211
Q ss_pred CChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCC--HHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003913 271 LSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNID--KERISLLKKEMQQAGFEEGKEVLLSV 338 (787)
Q Consensus 271 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~--~~~a~~l~~~m~~~g~~p~~~t~~~l 338 (787)
.--.+.++.+|+.+.+.|+..+......--.+.......+ ..++.++++.+.+.|+++....|..+
T Consensus 156 --e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 --EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred --HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 1244677778888888787766554332111111111111 34677777788888777766665543
No 200
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.93 Score=47.00 Aligned_cols=179 Identities=14% Similarity=0.074 Sum_probs=105.2
Q ss_pred CCHHHHHHHH-HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HHcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 003913 330 EGKEVLLSVL-RVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAY--AKIGEFMKSLEIFREMQERLGSASVPAYH 406 (787)
Q Consensus 330 p~~~t~~~li-~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 406 (787)
|.-.++..+- .++.-.|+.++|..+-...++... ...+...+++. --.++.+.|...|++-+.. .|+...-
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~---~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~s- 239 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA---TNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKS- 239 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc---chhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhH-
Confidence 3334444332 344567888888888777777652 23344444433 3457778888888877654 2333221
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHH
Q 003913 407 KIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE----KCRPNRTIYGIYLESLK 482 (787)
Q Consensus 407 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~----~~~p~~~~~~~li~~~~ 482 (787)
+..-.-.+.++.+.+.| +-..+.|++..|.+.|.+.+. ...++...|.....+..
T Consensus 240 ---------k~~~~~~k~le~~k~~g------------N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~ 298 (486)
T KOG0550|consen 240 ---------KSASMMPKKLEVKKERG------------NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNI 298 (486)
T ss_pred ---------HhHhhhHHHHHHHHhhh------------hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhc
Confidence 11111223333444444 345677777777777777764 45667777777777788
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 003913 483 NAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKK 537 (787)
Q Consensus 483 ~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g 537 (787)
+.|+.++|+.-.++..+.+ +--...|..-..++...++|++|.+-|+...+..
T Consensus 299 rLgrl~eaisdc~~Al~iD--~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 299 RLGRLREAISDCNEALKID--SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred ccCCchhhhhhhhhhhhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8888888888888777653 0111222222334455677888888887776543
No 201
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.55 E-value=4 Score=48.24 Aligned_cols=191 Identities=11% Similarity=0.016 Sum_probs=109.4
Q ss_pred hhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChH
Q 003913 305 HSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFM 384 (787)
Q Consensus 305 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 384 (787)
-+...+.|+.+-+-+++++++. +++..-|. |+. ..++++.|..-+.++- ...|.-.++---+.|.+.
T Consensus 859 VAq~SqkDPkEyLP~L~el~~m--~~~~rkF~--ID~--~L~ry~~AL~hLs~~~-------~~~~~e~~n~I~kh~Ly~ 925 (1265)
T KOG1920|consen 859 VAQKSQKDPKEYLPFLNELKKM--ETLLRKFK--IDD--YLKRYEDALSHLSECG-------ETYFPECKNYIKKHGLYD 925 (1265)
T ss_pred HHHHhccChHHHHHHHHHHhhc--hhhhhhee--HHH--HHHHHHHHHHHHHHcC-------ccccHHHHHHHHhcccch
Confidence 4445556677777777766632 22222221 111 2356666665444332 123334444555677777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHH----HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003913 385 KSLEIFREMQERLGSASVPAYHKII----ELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAF 460 (787)
Q Consensus 385 ~A~~~~~~m~~~g~~p~~~t~~~li----~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~ 460 (787)
+|+.++. |+...+..+. .-+...+.+++|.-.|+..-+ .---+.+|-.+|+|.+|..+.
T Consensus 926 ~aL~ly~--------~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a 988 (1265)
T KOG1920|consen 926 EALALYK--------PDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLA 988 (1265)
T ss_pred hhhheec--------cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHH
Confidence 7777653 4555544444 344455666766666554322 123456777788888888887
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003913 461 SECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (787)
Q Consensus 461 ~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (787)
.++..+-.--..+-..|+.-+...++.-+|-++..+.... ..-.+..|++...|++|+++...-.
T Consensus 989 ~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---------~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 989 AQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---------PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---------HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 7765321112223367788888888888888888877654 1223455666777888887766544
No 202
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.51 E-value=1.1 Score=43.31 Aligned_cols=48 Identities=15% Similarity=0.182 Sum_probs=26.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHhcCCHHHH
Q 003913 443 LTNMYLNLGMHDRLHLAFSECLEKCRPNR---TIYGIYLESLKNAGNIEKA 490 (787)
Q Consensus 443 li~~~~~~g~~~~a~~~~~~m~~~~~p~~---~~~~~li~~~~~~g~~~~A 490 (787)
+..-|.+.|.+..|..-++.+++..+-.. ...-.|+.+|.+.|..+.|
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 45556666666666666666665433322 3345556666666666543
No 203
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.49 E-value=0.98 Score=39.03 Aligned_cols=67 Identities=19% Similarity=0.325 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC
Q 003913 470 NRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKY 538 (787)
Q Consensus 470 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 538 (787)
+....+..++.+.++|+-+.-.++++++.+.+ .+++.....+..||.+.|+..+|-+++.+..++|+
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~--~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKNE--EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34445556777777788777777777776544 46777777777788888888888888888777764
No 204
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.46 E-value=0.22 Score=50.08 Aligned_cols=86 Identities=13% Similarity=0.148 Sum_probs=45.4
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHhcC
Q 003913 413 CKAEETELTESLMKEFVETGMKPL----MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRP---NRTIYGIYLESLKNAG 485 (787)
Q Consensus 413 ~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p---~~~~~~~li~~~~~~g 485 (787)
.+.|++++|...|+.+++. .|+ ..++..+..+|...|++++|...|..+.+..+. ....+-.+...|...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 3445555555555555542 122 234455555555666666666666665542222 2334444455555666
Q ss_pred CHHHHHHHHHHhhhC
Q 003913 486 NIEKAEEIFNHMHSD 500 (787)
Q Consensus 486 ~~~~A~~l~~~m~~~ 500 (787)
+.++|..+|++.++.
T Consensus 232 ~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 232 DTAKAKAVYQQVIKK 246 (263)
T ss_pred CHHHHHHHHHHHHHH
Confidence 666666666666665
No 205
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.43 E-value=0.085 Score=41.21 Aligned_cols=54 Identities=17% Similarity=0.082 Sum_probs=24.3
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 003913 447 YLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 447 ~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (787)
|.+.+++++|.++++.++.-.+.+...|......|.+.|++++|.+.|+...+.
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344444444444444444433334444444444444444444444444444443
No 206
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.30 E-value=0.23 Score=43.47 Aligned_cols=48 Identities=15% Similarity=0.192 Sum_probs=24.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHH
Q 003913 468 RPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILS 515 (787)
Q Consensus 468 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~ 515 (787)
.|+..+..+++.+|+..|++..|+++.+...+...++-+..+|..|+.
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 455555555555555555555555555555444334444555555554
No 207
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.30 E-value=3 Score=40.37 Aligned_cols=200 Identities=15% Similarity=0.061 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003913 332 KEVLLSVLRVCAKEGDVEDAEKTWLRLLES-DNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIE 410 (787)
Q Consensus 332 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 410 (787)
...+......+...+.+..+...+...... ........+..+...+...+.+..+.+.+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 566777777788888888888887777652 222345666667777778888888888888887653332 122222333
Q ss_pred -HHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhcCC
Q 003913 411 -LLCKAEETELTESLMKEFVETGM--KPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRP-NRTIYGIYLESLKNAGN 486 (787)
Q Consensus 411 -~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p-~~~~~~~li~~~~~~g~ 486 (787)
.+...|+.+.|...+.+.....- ......+......+...++.+.+...+....+..+. ....+..+...+...++
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 68888899999998888855221 123445555555577888999999999988875555 57888888888888999
Q ss_pred HHHHHHHHHHhhhCCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 487 IEKAEEIFNHMHSDQTIGVN-TRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 487 ~~~A~~l~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
++.|...+....... |+ ...+..+...+...|..+++...+.+..+
T Consensus 218 ~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 218 YEEALEYYEKALELD---PDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHHhhC---cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999988863 33 45556666666677778888888888876
No 208
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.29 E-value=0.9 Score=49.99 Aligned_cols=237 Identities=14% Similarity=0.110 Sum_probs=132.9
Q ss_pred CCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCH--------HHHHHHHHHHHcCCCCCChhhHHHHHHHH
Q 003913 212 VPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRP--------SLHNSLFRALVSKPGGLSKYYLQQAEFIF 283 (787)
Q Consensus 212 ~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~--------~t~~~ll~~~~~~~~~~~~g~~~~A~~~~ 283 (787)
.|-...|..+..... +.-.++-|+..|-+...-.|++.-- ..-.+-+.++. |.+++|++++
T Consensus 689 nPHprLWrllAe~Al---~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~--------g~feeaek~y 757 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYAL---FKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFY--------GEFEEAEKLY 757 (1189)
T ss_pred CCchHHHHHHHHHHH---HHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhh--------cchhHhhhhh
Confidence 366778887777666 5677788888887765543442110 01112233333 5899999999
Q ss_pred HHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003913 284 HNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEG----KEVLLSVLRVCAKEGDVEDAEKTWLRLL 359 (787)
Q Consensus 284 ~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~----~~t~~~li~~~~~~g~~~~A~~~~~~m~ 359 (787)
-+|-++++.. ..+.+.|||-++.++++. .|-..| ...++.+..-++....|++|.+.+..-.
T Consensus 758 ld~drrDLAi-----------elr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~ 823 (1189)
T KOG2041|consen 758 LDADRRDLAI-----------ELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG 823 (1189)
T ss_pred hccchhhhhH-----------HHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8887766531 445566777776666542 111111 3456777777777777777777765432
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 003913 360 ESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPS 439 (787)
Q Consensus 360 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 439 (787)
.. ...+.+|.+...+++-..+-+.+.+ |....-.|...+.+.|.-++|.+.|-+. + .|
T Consensus 824 ~~---------e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~p---- 881 (1189)
T KOG2041|consen 824 DT---------ENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRR---S-LP---- 881 (1189)
T ss_pred ch---------HhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhc---c-Cc----
Confidence 11 1245555555455444444333332 4445556667777777777776665432 1 11
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH--------------HHHHHHHHhcCCHHHHHHHHHHhhh
Q 003913 440 YINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIY--------------GIYLESLKNAGNIEKAEEIFNHMHS 499 (787)
Q Consensus 440 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~--------------~~li~~~~~~g~~~~A~~l~~~m~~ 499 (787)
-..++.|...+++.+|.++-+... -|.+.+. ---|..+-++|+.-+|-+++.+|.+
T Consensus 882 -kaAv~tCv~LnQW~~avelaq~~~---l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 882 -KAAVHTCVELNQWGEAVELAQRFQ---LPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhcc---chhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 133455666666666666554422 1222111 1124556667777677777777654
No 209
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.20 E-value=1.4 Score=47.08 Aligned_cols=165 Identities=10% Similarity=0.047 Sum_probs=94.6
Q ss_pred HHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHH
Q 003913 218 FHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDI 297 (787)
Q Consensus 218 y~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 297 (787)
+.+|-.++ +..+.+.-+++=++..+ +.||..+.-+++..=.. ..+.+|++++++.++.|-. .
T Consensus 172 q~IMq~AW----RERnp~aRIkaA~eALe---i~pdCAdAYILLAEEeA-------~Ti~Eae~l~rqAvkAgE~----~ 233 (539)
T PF04184_consen 172 QEIMQKAW----RERNPQARIKAAKEALE---INPDCADAYILLAEEEA-------STIVEAEELLRQAVKAGEA----S 233 (539)
T ss_pred HHHHHHHH----hcCCHHHHHHHHHHHHH---hhhhhhHHHhhcccccc-------cCHHHHHHHHHHHHHHHHH----h
Confidence 44444455 46777777777777775 56877766555543111 2588899999888765521 1
Q ss_pred HHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHH
Q 003913 298 YSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGI-PTPAFVYKMEA 376 (787)
Q Consensus 298 ~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~ 376 (787)
+... ...+..| ..++.+..+...|-..+-.-+..++-+.|+.++|.+.+++|.+..... ...+...|+.+
T Consensus 234 lg~s---~~~~~~g------~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~ 304 (539)
T PF04184_consen 234 LGKS---QFLQHHG------HFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEA 304 (539)
T ss_pred hchh---hhhhccc------chhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHH
Confidence 1100 0001111 111112222222223333455666668899999999999988754322 23355668999
Q ss_pred HHHcCChHHHHHHHHHHHHcCCC-CCHHHHHHHH
Q 003913 377 YAKIGEFMKSLEIFREMQERLGS-ASVPAYHKII 409 (787)
Q Consensus 377 ~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~li 409 (787)
+...+.+.++..++.+-.+...+ --...|++.+
T Consensus 305 LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 305 LLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 99999999999998887543221 1234566544
No 210
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.12 E-value=0.12 Score=40.24 Aligned_cols=57 Identities=9% Similarity=-0.032 Sum_probs=51.4
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 003913 478 LESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLK 536 (787)
Q Consensus 478 i~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (787)
-..|.+.+++++|.++++.+...+ |.+...|......+.+.|++++|.+.|+...+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD--PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC--cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 357889999999999999999985 667888999999999999999999999999973
No 211
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.12 E-value=0.51 Score=45.75 Aligned_cols=142 Identities=8% Similarity=0.025 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH---
Q 003913 333 EVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKII--- 409 (787)
Q Consensus 333 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li--- 409 (787)
.+.++++..+.-.|.+.-....+.++++...+.++.....|++.-.+.|+.+.|...|++..+..-+.|..+.+.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34556666666777777777778888877766677777778888888888888888888776554444444444443
Q ss_pred --HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 003913 410 --ELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGI 476 (787)
Q Consensus 410 --~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~ 476 (787)
..|.-.+++..|...+.+..... .-|+...|.-.-+..-.|+..+|.+..+.|... .|...+-++
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~-~P~~~l~es 324 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ-DPRHYLHES 324 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc-CCccchhhh
Confidence 33445566777777777776644 335555555554555567888888888888763 233333333
No 212
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.02 E-value=2.7 Score=46.06 Aligned_cols=93 Identities=15% Similarity=0.124 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHccCChhHHHHH---------HHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCC
Q 003913 180 FALATKLADYMGKERKFAKCRDI---------FDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGY 250 (787)
Q Consensus 180 ~~~~~~li~~~~~~g~~~~A~~~---------f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~ 250 (787)
.+.+++-+--|...|.+++|..+ ++.+.... .+..-+++.=.+|.+. |.-.+-+-+.-+++|++. |-
T Consensus 556 evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~A--LeAL~f~~ARkAY~rV-Rdl~~L~li~EL~~~k~r-ge 631 (1081)
T KOG1538|consen 556 EVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEA--LEALDFETARKAYIRV-RDLRYLELISELEERKKR-GE 631 (1081)
T ss_pred cccccccchhhhhccchhhhhcccccceecchHHHHHHHH--HhhhhhHHHHHHHHHH-hccHHHHHHHHHHHHHhc-CC
Confidence 34444445556677777777543 22222111 1344556666666632 334444555556677765 66
Q ss_pred CCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHH
Q 003913 251 QPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHN 285 (787)
Q Consensus 251 ~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~ 285 (787)
.|+......++ +| . |.+.+|.++|.+
T Consensus 632 ~P~~iLlA~~~-Ay--~------gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 632 TPNDLLLADVF-AY--Q------GKFHEAAKLFKR 657 (1081)
T ss_pred CchHHHHHHHH-Hh--h------hhHHHHHHHHHH
Confidence 67766433332 22 2 478888777753
No 213
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.99 E-value=0.14 Score=40.67 Aligned_cols=62 Identities=23% Similarity=0.323 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh---cCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 003913 438 PSYINLTNMYLNLGMHDRLHLAFSECLE---KCR---PN-RTIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (787)
Q Consensus 438 ~t~~~li~~~~~~g~~~~a~~~~~~m~~---~~~---p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (787)
.+|+.+...|...|++++|+..|++.++ ... |+ ..+++.+...|...|++++|++.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3455555566666666666666665553 111 11 34566667777777777777777766543
No 214
>PRK15331 chaperone protein SicA; Provisional
Probab=94.84 E-value=0.71 Score=41.97 Aligned_cols=90 Identities=13% Similarity=-0.013 Sum_probs=69.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCH
Q 003913 444 TNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDF 523 (787)
Q Consensus 444 i~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~ 523 (787)
..-+...|++++|..+|.-+..-..-|..-|..|...+-..+++++|+..|......+ .-|...+-.+..+|...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~--~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL--KNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--cCCCCccchHHHHHHHhCCH
Confidence 3445678889999999888776445566677888888888899999999988776654 34666677778888899999
Q ss_pred HHHHHHHHHHHH
Q 003913 524 VKAEKIYDLMCL 535 (787)
Q Consensus 524 ~~A~~~~~~m~~ 535 (787)
+.|+..|+..++
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999988886
No 215
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.68 E-value=2.1 Score=38.41 Aligned_cols=43 Identities=19% Similarity=0.128 Sum_probs=23.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 003913 337 SVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKI 380 (787)
Q Consensus 337 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 380 (787)
.++..+.+.+.......+++.+...+. .+...++.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHH
Confidence 344444455555556666655555543 3455555566666554
No 216
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.62 E-value=0.76 Score=41.69 Aligned_cols=72 Identities=13% Similarity=0.158 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-----CCCCCCCHHHH
Q 003913 438 PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHS-----DQTIGVNTRSC 510 (787)
Q Consensus 438 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~~~~~p~~~t~ 510 (787)
.+...++..+...|++++|..+...+....+-|...|..+|.+|...|+..+|.++|+++.+ .| +.|+..+-
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg-~~Ps~~~~ 139 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELG-IEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS-----HHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhC-cCcCHHHH
Confidence 35566777788899999999999999887788999999999999999999999999987743 46 67776543
No 217
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.58 E-value=0.35 Score=42.38 Aligned_cols=85 Identities=8% Similarity=0.081 Sum_probs=66.8
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHH---------------HCCCCCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHH
Q 003913 179 DFALATKLADYMGKERKFAKCRDIFDDII---------------NQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNR 243 (787)
Q Consensus 179 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~---------------~~g~~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~ 243 (787)
|..++.++|-++++.|+++....+++..= .....|+..+..+++.+|+ .++++..|+++.+.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~---~n~~i~~al~~vd~ 77 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFG---YNGDIFSALKLVDF 77 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHH---hcccHHHHHHHHHH
Confidence 34566777777777787777777775432 2235688999999999998 79999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHc
Q 003913 244 MIQLGGYQPRPSLHNSLFRALVS 266 (787)
Q Consensus 244 m~~~~g~~pd~~t~~~ll~~~~~ 266 (787)
..+..+++-+..+|..|+.-+..
T Consensus 78 fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 78 FSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHH
Confidence 98887888888899988886544
No 218
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.58 E-value=0.82 Score=39.48 Aligned_cols=137 Identities=17% Similarity=0.159 Sum_probs=69.7
Q ss_pred hhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003913 274 YYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEK 353 (787)
Q Consensus 274 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ 353 (787)
|.++++.++..+..... +..-++|.| . .--+.....-+++.+..-|---|... +|++.....
T Consensus 16 G~V~qGveii~k~v~Ss---ni~E~NWvI--C---NiiDaa~C~yvv~~LdsIGkiFDis~----------C~NlKrVi~ 77 (161)
T PF09205_consen 16 GDVKQGVEIIEKTVNSS---NIKEYNWVI--C---NIIDAADCDYVVETLDSIGKIFDISK----------CGNLKRVIE 77 (161)
T ss_dssp T-HHHHHHHHHHHHHHS----HHHHTHHH--H---HHHHH--HHHHHHHHHHHGGGS-GGG-----------S-THHHHH
T ss_pred chHHHHHHHHHHHcCcC---Cccccceee--e---ecchhhchhHHHHHHHHHhhhcCchh----------hcchHHHHH
Confidence 68888888888887654 356667766 2 22122223334444444343333332 233332222
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 003913 354 TWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGM 433 (787)
Q Consensus 354 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 433 (787)
-+-.+ | .+......-++...+.|+-+.-.+++.++.+ +-.++....-.+..+|.+.|...++.+++.+.-+.|+
T Consensus 78 C~~~~---n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 78 CYAKR---N--KLSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHT---T-----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHh---c--chHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 22111 1 1223334456677777777777777777664 2345666666777788888888888888777777775
Q ss_pred C
Q 003913 434 K 434 (787)
Q Consensus 434 ~ 434 (787)
+
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 3
No 219
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=94.48 E-value=7.1 Score=40.58 Aligned_cols=104 Identities=16% Similarity=0.132 Sum_probs=53.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003913 335 LLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCK 414 (787)
Q Consensus 335 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 414 (787)
.+..|.-|...|....|.++-.+.. .|+..-|-..+.+|+..+++++-.++-.. + -.++-|-.++.+|.+
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s--k----KsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS--K----KSPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--C----CCCCChHHHHHHHHH
Confidence 3444445555566655555543331 24555566666666666666654443221 1 123555566666666
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003913 415 AEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHL 458 (787)
Q Consensus 415 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 458 (787)
.|...+|..+..++ .+..-+..|.++|++.+|.+
T Consensus 250 ~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~ 283 (319)
T PF04840_consen 250 YGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQ 283 (319)
T ss_pred CCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHH
Confidence 66666665555441 12344455555555555543
No 220
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.45 E-value=7.9 Score=41.02 Aligned_cols=391 Identities=13% Similarity=0.116 Sum_probs=214.7
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHhc--CC-----------CccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCC----
Q 003913 149 YLAVHCMRIRENETGFRVYEWMMQQ--HW-----------YRFDFALATKLADYMGKERKFAKCRDIFDDIINQGR---- 211 (787)
Q Consensus 149 ~~~~~~~~~~~~~~A~~~~~~m~~~--~~-----------~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~---- 211 (787)
|-.+.+-+.+.+.+|.+.+..-..+ +. .-+|...-+..++.+.+.|++.+++.++++|..+=.
T Consensus 84 F~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~ 163 (549)
T PF07079_consen 84 FKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKREC 163 (549)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhh
Confidence 3334667889999999888765544 20 122445556778888999999999999998876533
Q ss_pred CCCHhHHHHHHHHHhcC-----CcC-------CCHHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHcCCCCCChh
Q 003913 212 VPSEMTFHILIVAYLSA-----PVQ-------GCLDEACSIYNRMIQLG-----GYQPRPSLHNSLFRALVSKPGGLSKY 274 (787)
Q Consensus 212 ~pd~~ty~~li~~~~~~-----~~~-------g~~~~A~~l~~~m~~~~-----g~~pd~~t~~~ll~~~~~~~~~~~~g 274 (787)
.-|+.+||.++-.+.++ ... ..++-++-...+|...+ .+.|....+..++.-..-... .
T Consensus 164 ~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~----e 239 (549)
T PF07079_consen 164 EWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPK----E 239 (549)
T ss_pred cccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCH----h
Confidence 35788888865555421 000 00111222222222110 234444444444444332211 1
Q ss_pred hHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHhcCChHH
Q 003913 275 YLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEE----GKEVLLSVLRVCAKEGDVED 350 (787)
Q Consensus 275 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p----~~~t~~~li~~~~~~g~~~~ 350 (787)
++.--.+++..-...-+.|+.+..-.-+. ....+ +.+++..+-+.+....+.+ =..+|..++....+.+....
T Consensus 240 ~l~~~mq~l~~We~~yv~p~~~LVi~~L~-~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~ 316 (549)
T PF07079_consen 240 RLPPLMQILENWENFYVHPNYDLVIEPLK-QQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEE 316 (549)
T ss_pred hccHHHHHHHHHHhhccCCchhHHHHHHH-HHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 22222333333333344555443322221 22222 3455555444443332221 24578889999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHH-------HHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHH-HHHHHH---HHHHhc
Q 003913 351 AEKTWLRLLESDNGIPTPAF-------VYKMEAYAK----IGEFMKSLEIFREMQERLGSASVP-AYHKII---ELLCKA 415 (787)
Q Consensus 351 A~~~~~~m~~~~~~~~~~~~-------~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~-t~~~li---~~~~~~ 415 (787)
|.+.+.-+.-..+. ...- ..+.+..|. .-+...=+.++++.....+ |.. .-..|+ .-+-+.
T Consensus 317 a~q~l~lL~~ldp~--~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~ 392 (549)
T PF07079_consen 317 AKQYLALLKILDPR--ISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEI 392 (549)
T ss_pred HHHHHHHHHhcCCc--chhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhc
Confidence 99998877665432 2211 123333331 1233444556666655422 211 112232 334455
Q ss_pred CC-hHHHHHHHHHHHHcCCCCCHHHHHH----HHHHHHhc---CCHHHHHHHHHHHHh-cCCC----CHHHHHHHHHH--
Q 003913 416 EE-TELTESLMKEFVETGMKPLMPSYIN----LTNMYLNL---GMHDRLHLAFSECLE-KCRP----NRTIYGIYLES-- 480 (787)
Q Consensus 416 g~-~~~A~~l~~~m~~~g~~p~~~t~~~----li~~~~~~---g~~~~a~~~~~~m~~-~~~p----~~~~~~~li~~-- 480 (787)
|. -++|.++++...+-- .-|...-|. +=.+|.++ ..+..-..+-+-+.+ |++| +...-|.|.++
T Consensus 393 g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEy 471 (549)
T PF07079_consen 393 GQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEY 471 (549)
T ss_pred CCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHH
Confidence 65 778999999888731 223333222 22344433 234444444444444 6655 34455666554
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHH-HHHHHHhhccccc
Q 003913 481 LKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWME-KLDYVLSLNRKEV 559 (787)
Q Consensus 481 ~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~-~l~~~~~l~~~~~ 559 (787)
+-..|++.++.-.-.-+.+ +.|++.+|..+.-.+....++++|..++..+. ++.++.+ +.+.++.++++.+
T Consensus 472 Lysqgey~kc~~ys~WL~~---iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP-----~n~~~~dskvqKAl~lCqKh~ 543 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWLTK---IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP-----PNERMRDSKVQKALALCQKHL 543 (549)
T ss_pred HHhcccHHHHHHHHHHHHH---hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC-----CchhhHHHHHHHHHHHHHHhh
Confidence 4457999988766555555 67999999999999999999999999998765 4444432 3455666655443
No 221
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.45 E-value=4.9 Score=42.29 Aligned_cols=79 Identities=13% Similarity=0.010 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHH---cCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003913 334 VLLSVLRVCAKEGDVEDAEKTWLRLLESD---NGIPTPAFVYKMEAYAK---IGEFMKSLEIFREMQERLGSASVPAYHK 407 (787)
Q Consensus 334 t~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 407 (787)
+...++-+|....+++...++.+.+...- +.-...+--...-++-+ .|+.++|++++..+......++..+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 33455556888888888888888887652 11111111223455556 7888888888888666666677777776
Q ss_pred HHHHH
Q 003913 408 IIELL 412 (787)
Q Consensus 408 li~~~ 412 (787)
+...|
T Consensus 223 ~GRIy 227 (374)
T PF13281_consen 223 LGRIY 227 (374)
T ss_pred HHHHH
Confidence 66555
No 222
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.32 E-value=0.51 Score=50.13 Aligned_cols=63 Identities=14% Similarity=0.022 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 003913 437 MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNR---TIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (787)
Q Consensus 437 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (787)
...++.+..+|.+.|++++|...|+..++..+-+. .+|..+..+|...|++++|++.+++.++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444555555555555555555555444222222 2355555555555555555555555554
No 223
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.28 E-value=1.5 Score=46.00 Aligned_cols=132 Identities=13% Similarity=0.105 Sum_probs=106.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 003913 401 SVPAYHKIIELLCKAEETELTESLMKEFVETG-MKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLE 479 (787)
Q Consensus 401 ~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~ 479 (787)
=...|...|++..+..-++.|..+|-++.+.| +.+++++++++|.-++ .|+...|..+|+.-+...+.+..--+-.+.
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~ 474 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLL 474 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHH
Confidence 45678888888888888999999999999988 6688899999998776 466778888888766655545555566777
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 480 SLKNAGNIEKAEEIFNHMHSDQTIGVN--TRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 480 ~~~~~g~~~~A~~l~~~m~~~~~~~p~--~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
-+.+.++-+.|..+|+..+.+ +..+ ...|..+|.--+.-|+...|..+=++|.+
T Consensus 475 fLi~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 475 FLIRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 788889999999999976655 3334 56899999999999999999999888886
No 224
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.06 E-value=3.2 Score=37.21 Aligned_cols=126 Identities=16% Similarity=0.122 Sum_probs=81.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003913 371 VYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNL 450 (787)
Q Consensus 371 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~ 450 (787)
..+|..+.+.+....+..+++.+...+. .+...+|.+|..|++.. ..+..+.+.. ..+.+....++..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 4577778788888888888888887763 57778888888888764 3333344332 12334445577777777
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHc
Q 003913 451 GMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNA-GNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS 519 (787)
Q Consensus 451 g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~ 519 (787)
+.++++..++..+.. |...+..+... ++++.|.+++.+- + +...|..++..+..
T Consensus 83 ~l~~~~~~l~~k~~~--------~~~Al~~~l~~~~d~~~a~~~~~~~---~----~~~lw~~~~~~~l~ 137 (140)
T smart00299 83 KLYEEAVELYKKDGN--------FKDAIVTLIEHLGNYEKAIEYFVKQ---N----NPELWAEVLKALLD 137 (140)
T ss_pred CcHHHHHHHHHhhcC--------HHHHHHHHHHcccCHHHHHHHHHhC---C----CHHHHHHHHHHHHc
Confidence 878777777766531 22233334444 6777777777652 1 55677777766653
No 225
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.05 E-value=0.28 Score=52.07 Aligned_cols=66 Identities=12% Similarity=-0.114 Sum_probs=59.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 003913 468 RPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNT----RSCNIILSAYLSSGDFVKAEKIYDLMCLK 536 (787)
Q Consensus 468 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~----~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (787)
+.+...|+.+..+|.+.|++++|+..|++.++.+ |+. .+|..+..+|.+.|+.++|++.+++.++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~---Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN---PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5678899999999999999999999999999864 663 46999999999999999999999999974
No 226
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.01 E-value=4.2 Score=44.64 Aligned_cols=204 Identities=13% Similarity=0.082 Sum_probs=122.2
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 003913 309 DNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLE 388 (787)
Q Consensus 309 ~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 388 (787)
+...+-+...-+++|+++|-.|+.... ...|+-.|++.+|.++|.+- |.+ |..+.+|.....++.|.+
T Consensus 612 Rdl~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~~---G~e------nRAlEmyTDlRMFD~aQE 679 (1081)
T KOG1538|consen 612 RDLRYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKRS---GHE------NRALEMYTDLRMFDYAQE 679 (1081)
T ss_pred hccHHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHHc---Cch------hhHHHHHHHHHHHHHHHH
Confidence 333345555667788899988987654 44567789999999998653 332 123444444444444444
Q ss_pred HHH-------HHH--Hc-CCCCCHHHHHHHHHHHHhcCChHHHHHHHH------HHHHcCCCC---CHHHHHHHHHHHHh
Q 003913 389 IFR-------EMQ--ER-LGSASVPAYHKIIELLCKAEETELTESLMK------EFVETGMKP---LMPSYINLTNMYLN 449 (787)
Q Consensus 389 ~~~-------~m~--~~-g~~p~~~t~~~li~~~~~~g~~~~A~~l~~------~m~~~g~~p---~~~t~~~li~~~~~ 449 (787)
++. +|. ++ ...-|+.-=.+....+...|+.++|..+.. .+.+-+-+. +..+...+..-+-+
T Consensus 680 ~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~ 759 (1081)
T KOG1538|consen 680 FLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKK 759 (1081)
T ss_pred HhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhh
Confidence 432 111 10 000011111233455667788888776632 122222222 33455555555566
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHH-----------HHHHHHHHHH
Q 003913 450 LGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTR-----------SCNIILSAYL 518 (787)
Q Consensus 450 ~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~-----------t~~~li~~~~ 518 (787)
...+..|-++|..|-. -..+++.....+++.+|..+-++..+- .||+. -|.-.-.+|.
T Consensus 760 l~~~gLAaeIF~k~gD--------~ksiVqlHve~~~W~eAFalAe~hPe~---~~dVy~pyaqwLAE~DrFeEAqkAfh 828 (1081)
T KOG1538|consen 760 LDSPGLAAEIFLKMGD--------LKSLVQLHVETQRWDEAFALAEKHPEF---KDDVYMPYAQWLAENDRFEEAQKAFH 828 (1081)
T ss_pred ccccchHHHHHHHhcc--------HHHHhhheeecccchHhHhhhhhCccc---cccccchHHHHhhhhhhHHHHHHHHH
Confidence 7778889999988753 235678888999999999999988874 35532 2333445777
Q ss_pred cCCCHHHHHHHHHHHHH
Q 003913 519 SSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 519 ~~g~~~~A~~~~~~m~~ 535 (787)
++|+-.+|..+++.+..
T Consensus 829 kAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 829 KAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HhcchHHHHHHHHHhhh
Confidence 88888888888887764
No 227
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.95 E-value=9.8 Score=40.21 Aligned_cols=176 Identities=15% Similarity=0.081 Sum_probs=110.9
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCChHH
Q 003913 344 KEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCK---AEETEL 420 (787)
Q Consensus 344 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~---~g~~~~ 420 (787)
..++-+.|.+....-... .|. .---+-..|.-..+-++....|+..... ...--+++.+=+. .|+++.
T Consensus 314 ~isd~q~al~tv~rg~~~--sps--L~~~lse~yel~nd~e~v~~~fdk~~q~-----L~r~ys~~~s~~~s~~D~N~e~ 384 (660)
T COG5107 314 GISDKQKALKTVERGIEM--SPS--LTMFLSEYYELVNDEEAVYGCFDKCTQD-----LKRKYSMGESESASKVDNNFEY 384 (660)
T ss_pred hccHHHHHHHHHHhcccC--CCc--hheeHHHHHhhcccHHHHhhhHHHHHHH-----HHHHHhhhhhhhhccccCCccc
Confidence 345555666554432222 122 1122444555566666666667665431 1111122222222 233433
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-c-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 003913 421 TESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE-K-CRPNRTIYGIYLESLKNAGNIEKAEEIFNHMH 498 (787)
Q Consensus 421 A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-~-~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 498 (787)
-.+++-+-+ .--..+|..++++-.+..-++.|..+|.++.+ + ..+++.+++++|.-++. |+...|..+|+-=.
T Consensus 385 ~~Ell~kr~----~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl 459 (660)
T COG5107 385 SKELLLKRI----NKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGL 459 (660)
T ss_pred cHHHHHHHH----hhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHH
Confidence 333322211 12357889999999999999999999999988 5 68899999999998885 88899999999766
Q ss_pred hCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 499 SDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 499 ~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
.+ ++.+..--+-.+.-+.+-++-..|..+|+..+.
T Consensus 460 ~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~ 494 (660)
T COG5107 460 LK--FPDSTLYKEKYLLFLIRINDEENARALFETSVE 494 (660)
T ss_pred Hh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHH
Confidence 65 333334445667777888999999999996554
No 228
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.95 E-value=0.4 Score=46.90 Aligned_cols=116 Identities=9% Similarity=0.023 Sum_probs=69.3
Q ss_pred CHHHHHHHHHHHH-----hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 003913 331 GKEVLLSVLRVCA-----KEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAY 405 (787)
Q Consensus 331 ~~~t~~~li~~~~-----~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 405 (787)
|..+|...+..+. +.+.++-....++.|.+-|+.-|..+|+.|++.+-|..- .|..+ +
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~nv-f 128 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQNV-F 128 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccHHH-H
Confidence 5555555555544 345666666677788888888888888887776544321 12111 1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHh
Q 003913 406 HKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGM-HDRLHLAFSECLE 465 (787)
Q Consensus 406 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~-~~~a~~~~~~m~~ 465 (787)
....--|-+ +-+-+..++++|...|+.||..+-..|++++.+.+. ..+..++.--|.+
T Consensus 129 Q~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 129 QKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 111111211 234467788888888888888888888888888775 3334444444443
No 229
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.89 E-value=1.1 Score=46.73 Aligned_cols=96 Identities=18% Similarity=0.137 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHH
Q 003913 438 PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAY 517 (787)
Q Consensus 438 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~ 517 (787)
.++..|.-+|.+.+.+..|++.-.+.++.-++|+...-.=..+|...|+++.|+..|+++.+.. |-|...-+-|+..-
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLE--PSNKAARAELIKLK 335 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHH
Confidence 3455566666666666666666666665455666665556666666777777777777776643 22333333333333
Q ss_pred HcCCCH-HHHHHHHHHHHH
Q 003913 518 LSSGDF-VKAEKIYDLMCL 535 (787)
Q Consensus 518 ~~~g~~-~~A~~~~~~m~~ 535 (787)
.+.... +...++|..|..
T Consensus 336 ~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 333333 333566666664
No 230
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=93.87 E-value=4.2 Score=42.23 Aligned_cols=134 Identities=15% Similarity=0.038 Sum_probs=96.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH----cCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----c-CCCCHH
Q 003913 404 AYHKIIELLCKAEETELTESLMKEFVE----TGMK-PLMPSYINLTNMYLNLGMHDRLHLAFSECLE-----K-CRPNRT 472 (787)
Q Consensus 404 t~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~-p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~-~~p~~~ 472 (787)
.|..|...|.-.|+++.|+..++.-+. -|-+ ....++..|.+++.-.|+++.|.+.|+.... + -.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 566677777778899999887765332 2322 1245788899999999999999998887643 1 123345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhh----CCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 003913 473 IYGIYLESLKNAGNIEKAEEIFNHMHS----DQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKK 537 (787)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~l~~~m~~----~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g 537 (787)
+.-+|...|.-...+++|+..+.+-.. .+..--...+|-+|..+|...|..++|+.+.+.-++..
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS 345 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 666788888888889999998876432 11111256788999999999999999998888776543
No 231
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.85 E-value=0.88 Score=44.64 Aligned_cols=115 Identities=10% Similarity=0.112 Sum_probs=74.0
Q ss_pred CHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 003913 366 PTPAFVYKMEAYAKI-----GEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSY 440 (787)
Q Consensus 366 ~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 440 (787)
|-.+|-+.+..+... +.++-....++.|.+-|+.-|..+|+.||+.+-+..-.-. .+|+..
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~--nvfQ~~------------ 131 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQ--NVFQKV------------ 131 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccH--HHHHHH------------
Confidence 556666666666543 5566667777888888888888888888877655432111 111111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHhhh
Q 003913 441 INLTNMYLNLGMHDRLHLAFSECLE-KCRPNRTIYGIYLESLKNAGNI-EKAEEIFNHMHS 499 (787)
Q Consensus 441 ~~li~~~~~~g~~~~a~~~~~~m~~-~~~p~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~ 499 (787)
.--|- .+-+-++.++++|.. |+.||-.+-..|+.++.+.|.. .+...+.--|.+
T Consensus 132 ---F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 132 ---FLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred ---HhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 11111 123468899999998 9999999999999999998753 334444444443
No 232
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.82 E-value=10 Score=39.96 Aligned_cols=70 Identities=14% Similarity=-0.052 Sum_probs=41.6
Q ss_pred cCCCHHHHHHHHHHHHHhCCCC-CCHHHHHH-HHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHH
Q 003913 230 VQGCLDEACSIYNRMIQLGGYQ-PRPSLHNS-LFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLI 302 (787)
Q Consensus 230 ~~g~~~~A~~l~~~m~~~~g~~-pd~~t~~~-ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 302 (787)
...+++.-+++++.|.....+. ++...... ..-++-+++ ..|+.++|.+++..++...-.++++++..+.
T Consensus 153 diqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn---~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 153 DIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRN---KPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred hhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcc---cCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 6788999999999998642111 11111100 111122211 1268888888888877666677778877766
No 233
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.71 E-value=11 Score=39.98 Aligned_cols=45 Identities=7% Similarity=0.008 Sum_probs=33.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHHc
Q 003913 336 LSVLRVCAKEGDVEDAEKTWLRLLESD----NGIPTPAFVYKMEAYAKI 380 (787)
Q Consensus 336 ~~li~~~~~~g~~~~A~~~~~~m~~~~----~~~~~~~~~~li~~~~~~ 380 (787)
+..++++...|++.+++.++.++..+= ..-++.+|+.++-+++++
T Consensus 132 ~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrS 180 (549)
T PF07079_consen 132 EIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRS 180 (549)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHH
Confidence 566777788899999998888776643 336788888877777654
No 234
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=93.68 E-value=10 Score=39.45 Aligned_cols=102 Identities=12% Similarity=0.125 Sum_probs=52.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003913 373 KMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGM 452 (787)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~ 452 (787)
.|.-+...|+...|.++-.+.. .|+..-|-..|.+|+..+++++-..+-.. . -.+.-|-.++.+|.+.|+
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----k--KsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS----K--KSPIGYEPFVEACLKYGN 252 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----C--CCCCChHHHHHHHHHCCC
Confidence 3444455555555555544332 24555566666666666666554443221 1 122455556666666666
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003913 453 HDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEI 493 (787)
Q Consensus 453 ~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l 493 (787)
..+|......+ .+..-+..|.++|++.+|.+.
T Consensus 253 ~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 253 KKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHH
Confidence 66655555441 123445555666666665544
No 235
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.66 E-value=7.7 Score=38.00 Aligned_cols=153 Identities=11% Similarity=0.154 Sum_probs=76.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHH
Q 003913 441 INLTNMYLNLGMHDRLHLAFSECLEKCRP------------NRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTR 508 (787)
Q Consensus 441 ~~li~~~~~~g~~~~a~~~~~~m~~~~~p------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~ 508 (787)
+-|...|...+.+.+..+++.++...|.. -...|..=|.+|..+.+-..-..++++......--|.+.
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 44555555556555555555555432211 134566667777777666666666666543221224433
Q ss_pred HHHHHHHH-----HHcCCCHHHHHHH-HHHHH---HcCCccCHHHHHHHHHHHhhcccccc---cccccCCchHHHHHHH
Q 003913 509 SCNIILSA-----YLSSGDFVKAEKI-YDLMC---LKKYEIESAWMEKLDYVLSLNRKEVK---KPVSLNLSSEQRENLI 576 (787)
Q Consensus 509 t~~~li~~-----~~~~g~~~~A~~~-~~~m~---~~g~~~~p~~~~~l~~~~~l~~~~~~---~~~~~~l~~~~~~~~~ 576 (787)
.... |+- ..+.|++++|..- |+... +.|-+-....+..+..+-.+.+..+. ..-..|..-+|...+.
T Consensus 229 ImGv-IRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAKPyKNdPEIlAM 307 (440)
T KOG1464|consen 229 IMGV-IRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKPYKNDPEILAM 307 (440)
T ss_pred HHhH-HHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccCCCCCCHHHHHH
Confidence 3322 222 2356667666433 33222 22322222223333334444443333 1112345556779999
Q ss_pred HHHhhhhhhccchhhccee
Q 003913 577 GLLLGGLCIESDEKRKRHM 595 (787)
Q Consensus 577 ~~ll~~~~~~~~~~~a~~~ 595 (787)
..|+.+|+... +.+.+++
T Consensus 308 Tnlv~aYQ~Nd-I~eFE~I 325 (440)
T KOG1464|consen 308 TNLVAAYQNND-IIEFERI 325 (440)
T ss_pred HHHHHHHhccc-HHHHHHH
Confidence 99999998654 3333333
No 236
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.61 E-value=1.1 Score=46.60 Aligned_cols=127 Identities=12% Similarity=0.104 Sum_probs=85.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHc-----CCCC---------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 003913 373 KMEAYAKIGEFMKSLEIFREMQER-----LGSA---------SVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMP 438 (787)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~m~~~-----g~~p---------~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 438 (787)
-.+.|.+.|++..|...|++.... +..+ -..+++.+..+|.+.+++.+|++...+.+..+ ++|..
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~K 292 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVK 292 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchh
Confidence 357888899999999888875432 1111 12346667777777888888888887777765 56777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHhhhC
Q 003913 439 SYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEK-AEEIFNHMHSD 500 (787)
Q Consensus 439 t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~ 500 (787)
...-=..+|...|+++.|+..|+++++--+-|-.+-+-|+..--+.....+ ..++|..|..+
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 777777788888888888888888877555566666666665555444433 35666666543
No 237
>PRK15331 chaperone protein SicA; Provisional
Probab=93.59 E-value=2.2 Score=38.88 Aligned_cols=85 Identities=11% Similarity=-0.009 Sum_probs=37.6
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003913 344 KEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTES 423 (787)
Q Consensus 344 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ 423 (787)
..|++++|..+|.-+.-.++. +..-|..|..++-..+++++|...|......+. -|...+-.+..++...|+.+.|..
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHH
Confidence 445555555555554444332 333344444444445555555555544332221 122223334444444455555555
Q ss_pred HHHHHHH
Q 003913 424 LMKEFVE 430 (787)
Q Consensus 424 l~~~m~~ 430 (787)
.|...++
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 4444443
No 238
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.50 E-value=2.6 Score=43.21 Aligned_cols=96 Identities=17% Similarity=0.225 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCC---ccCHHHHHHHHHHhhhccC
Q 003913 234 LDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGL---EIQKDIYSGLIWLHSYQDN 310 (787)
Q Consensus 234 ~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~---~p~~~~~~~li~~~~~~~~ 310 (787)
+++.+.+++.|++. |++-+.++|-+..-........-..-....|..+|+.|.+.-+ .++..+++.++....---.
T Consensus 78 ~~~~~~~y~~L~~~-gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~~~~~~e 156 (297)
T PF13170_consen 78 FKEVLDIYEKLKEA-GFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAMTSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHHh-ccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhcccccHH
Confidence 55667788889886 7998888877654444331111111256677777777766542 2333444444411110000
Q ss_pred CCHHHHHHHHHHHHHcCCCC
Q 003913 311 IDKERISLLKKEMQQAGFEE 330 (787)
Q Consensus 311 g~~~~a~~l~~~m~~~g~~p 330 (787)
--.+.++.+|+.+.+.|+..
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~k 176 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKK 176 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCC
Confidence 01244455555555555544
No 239
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.41 E-value=8.7 Score=38.51 Aligned_cols=142 Identities=15% Similarity=0.153 Sum_probs=77.7
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 003913 340 RVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETE 419 (787)
Q Consensus 340 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 419 (787)
......|++.+|..+|+........ +...--.++.+|...|+.+.|..++..+...--........+-|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3455778888888888888877654 345556688888888999999988888764421112222222233344444443
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhcC
Q 003913 420 LTESLMKEFVETGMKP-LMPSYINLTNMYLNLGMHDRLHLAFSECLE--KCRPNRTIYGIYLESLKNAG 485 (787)
Q Consensus 420 ~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~--~~~p~~~~~~~li~~~~~~g 485 (787)
+...+-++.-. .| |...-..+...|...|+.+.|.+.+-.+++ ...-|...-..|+..+.-.|
T Consensus 221 ~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 221 EIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 33333333332 23 455555555566666666666555444443 22223333444444443333
No 240
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.13 E-value=11 Score=38.39 Aligned_cols=102 Identities=16% Similarity=0.123 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHhcCChH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003913 333 EVLLSVLRVCAKEGDVE---DAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKII 409 (787)
Q Consensus 333 ~t~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 409 (787)
.++..++.+|...+..+ +|.++++.+...... ...++-.-+..+.+.++.+++.+.+.+|...- .-....+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 35666777777766654 455566666544332 23445445666666888888888888888652 11223444444
Q ss_pred HHH---HhcCChHHHHHHHHHHHHcCCCCCH
Q 003913 410 ELL---CKAEETELTESLMKEFVETGMKPLM 437 (787)
Q Consensus 410 ~~~---~~~g~~~~A~~l~~~m~~~g~~p~~ 437 (787)
..+ ... ....|...+..++...+.|..
T Consensus 163 ~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 163 HHIKQLAEK-SPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHhh-CcHHHHHHHHHHHHHHhCCCh
Confidence 433 332 334555666665554445443
No 241
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.07 E-value=2.6 Score=45.97 Aligned_cols=133 Identities=15% Similarity=0.083 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003913 367 TPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNM 446 (787)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~ 446 (787)
..-.+.++.-+-+.|..+.|+.+-.+-.. -.....+.|+++.|.++.++ ..+...|..|.+.
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~ 356 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIALEIAKE------LDDPEKWKQLGDE 356 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHH
Confidence 34455566666666666666665443221 13334556666666555332 2345566666666
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHH
Q 003913 447 YLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKA 526 (787)
Q Consensus 447 ~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A 526 (787)
..+.|+++-|++.|.+.. -|..|.-.|.-.|+.+.-.++.+....+| -+|....++.-.|+.++.
T Consensus 357 AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~-------~~n~af~~~~~lgd~~~c 421 (443)
T PF04053_consen 357 ALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEERG-------DINIAFQAALLLGDVEEC 421 (443)
T ss_dssp HHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--------HHHHHHHHHHHT-HHHH
T ss_pred HHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHHcc-------CHHHHHHHHHHcCCHHHH
Confidence 777777777766666643 24556666666777666666666666655 244445555556666666
Q ss_pred HHHHHH
Q 003913 527 EKIYDL 532 (787)
Q Consensus 527 ~~~~~~ 532 (787)
.+++.+
T Consensus 422 v~lL~~ 427 (443)
T PF04053_consen 422 VDLLIE 427 (443)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666554
No 242
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.94 E-value=9.5 Score=37.00 Aligned_cols=201 Identities=14% Similarity=0.185 Sum_probs=109.9
Q ss_pred hhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChH
Q 003913 305 HSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFM 384 (787)
Q Consensus 305 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 384 (787)
.+|....++++|...+.+..+ |.+-|...|. ....++.|.-+.++|.+..- -+..|+--..+|..+|..+
T Consensus 39 vafRnAk~feKakdcLlkA~~-~yEnnrslfh-------AAKayEqaamLake~~klsE--vvdl~eKAs~lY~E~Gspd 108 (308)
T KOG1585|consen 39 VAFRNAKKFEKAKDCLLKASK-GYENNRSLFH-------AAKAYEQAAMLAKELSKLSE--VVDLYEKASELYVECGSPD 108 (308)
T ss_pred HHHHhhccHHHHHHHHHHHHH-HHHhcccHHH-------HHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHhCCcc
Confidence 445555566666665554432 1122222221 23445666666666665431 2345677788888899888
Q ss_pred HHHHHHHHHHH--cCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003913 385 KSLEIFREMQE--RLGSASVP--AYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAF 460 (787)
Q Consensus 385 ~A~~~~~~m~~--~g~~p~~~--t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~ 460 (787)
-|-..+++.-+ .++.|+.. .|.--+...-..++...|.++ |..+-+.+.+...+++|-..|
T Consensus 109 tAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el---------------~gk~sr~lVrl~kf~Eaa~a~ 173 (308)
T KOG1585|consen 109 TAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFEL---------------YGKCSRVLVRLEKFTEAATAF 173 (308)
T ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHH---------------HHHhhhHhhhhHHhhHHHHHH
Confidence 88777776532 12344322 233333333333333333333 334445566667776665555
Q ss_pred HHHHh---cC--CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 003913 461 SECLE---KC--RPNR-TIYGIYLESLKNAGNIEKAEEIFNHMHSDQT--IGVNTRSCNIILSAYLSSGDFVKAEKIYD 531 (787)
Q Consensus 461 ~~m~~---~~--~p~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~--~~p~~~t~~~li~~~~~~g~~~~A~~~~~ 531 (787)
.+-.. .+ -++. ..|-+.|-.|.-..++..|...++.--+.+. -+-+..+...|+.+| ..|+.+++.+++.
T Consensus 174 lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 174 LKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 44321 11 2222 3456666677777899999999988444321 123567888888888 4577776655543
No 243
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.93 E-value=7.1 Score=43.19 Aligned_cols=162 Identities=15% Similarity=0.134 Sum_probs=90.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHH
Q 003913 335 LLSVLRVCAKEGDVEDAEKTWLRLLESD-NGIP-----TPAFVYKMEAYAK----IGEFMKSLEIFREMQERLGSASVPA 404 (787)
Q Consensus 335 ~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~-----~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t 404 (787)
+..++....-.|+-+.+.+.+.+..+.+ +.-. .-.|...+..++. ....+.|.++++.+..+ -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 3445555556677777777776655532 2111 1234444444433 34567777778777765 456655
Q ss_pred HHHHH-HHHHhcCChHHHHHHHHHHHHcC--C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH-
Q 003913 405 YHKII-ELLCKAEETELTESLMKEFVETG--M-KPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLE- 479 (787)
Q Consensus 405 ~~~li-~~~~~~g~~~~A~~l~~~m~~~g--~-~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~- 479 (787)
|...- +.+...|++++|.+.|++..... . +.....+--+...+.-..++++|...|..+.+...-...+|.-+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 54333 45556677888888877655311 1 1123445555666666777777777777776633334444444432
Q ss_pred HHHhcCCH-------HHHHHHHHHhh
Q 003913 480 SLKNAGNI-------EKAEEIFNHMH 498 (787)
Q Consensus 480 ~~~~~g~~-------~~A~~l~~~m~ 498 (787)
.|...|+. ++|.++|.+..
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHH
Confidence 33345555 66666666654
No 244
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.78 E-value=5.8 Score=43.87 Aligned_cols=113 Identities=15% Similarity=0.177 Sum_probs=77.3
Q ss_pred HHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCC-CCCC-----HhHHHHHHHHHhcC-CcCCCH
Q 003913 162 TGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQG-RVPS-----EMTFHILIVAYLSA-PVQGCL 234 (787)
Q Consensus 162 ~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g-~~pd-----~~ty~~li~~~~~~-~~~g~~ 234 (787)
-+..+|.-+... +||.+ ..++...+=.|+-+.+++.+.+-.+.+ +.-. ..+|+..+..++.. ......
T Consensus 175 ~G~G~f~L~lSl--LPp~~---~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~ 249 (468)
T PF10300_consen 175 FGFGLFNLVLSL--LPPKV---LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPL 249 (468)
T ss_pred HHHHHHHHHHHh--CCHHH---HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCH
Confidence 356677777765 55553 467777778899999999888766542 2211 24577777776631 014678
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHH
Q 003913 235 DEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLL 287 (787)
Q Consensus 235 ~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~ 287 (787)
+.|.+++..+.+. -|+...|...-.-+.... |++++|.+.|+...
T Consensus 250 ~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~-----g~~~~Ai~~~~~a~ 294 (468)
T PF10300_consen 250 EEAEELLEEMLKR---YPNSALFLFFEGRLERLK-----GNLEEAIESFERAI 294 (468)
T ss_pred HHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHh-----cCHHHHHHHHHHhc
Confidence 8899999999875 588887766665555544 58999999988765
No 245
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.60 E-value=0.036 Score=35.79 Aligned_cols=28 Identities=14% Similarity=0.077 Sum_probs=25.6
Q ss_pred EEEccCCcccHHHHHHHHHHchhhcCCC
Q 003913 598 FQFNENSRMHSVLRRYLYDQYHEWLHPS 625 (787)
Q Consensus 598 ~~~~p~~~~~~~~l~~~y~~~g~~~~A~ 625 (787)
++++|+++.++..|+.+|...|++++|.
T Consensus 6 ie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 6 IELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 5678999999999999999999999885
No 246
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.96 E-value=5.5 Score=40.35 Aligned_cols=153 Identities=11% Similarity=0.052 Sum_probs=76.3
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHHhcCCHHH
Q 003913 380 IGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSY----INLTNMYLNLGMHDR 455 (787)
Q Consensus 380 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~----~~li~~~~~~g~~~~ 455 (787)
.|+..+|-..++++.+. .+.|..+++-.=.+|.-+|+.+.-...++++... ..||...| ..+.-++..+|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 45555555555555554 3445555555556666666666666666655542 12332222 222233345566666
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC--CCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 003913 456 LHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTI--GVNTRSCNIILSAYLSSGDFVKAEKIYDLM 533 (787)
Q Consensus 456 a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~--~p~~~t~~~li~~~~~~g~~~~A~~~~~~m 533 (787)
|++.-++..+-.+-|.-+-.++...+-..|++.++.++..+-...-.. -.-...|-...-.+...+.++.|+++|++=
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHH
Confidence 666666655544455555555666666666666666665543322100 000011222222334456666666666654
Q ss_pred H
Q 003913 534 C 534 (787)
Q Consensus 534 ~ 534 (787)
+
T Consensus 274 i 274 (491)
T KOG2610|consen 274 I 274 (491)
T ss_pred H
Confidence 3
No 247
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=91.94 E-value=2.6 Score=36.40 Aligned_cols=91 Identities=14% Similarity=0.035 Sum_probs=66.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCH---HHHHHHHHHHHcCCC
Q 003913 446 MYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNT---RSCNIILSAYLSSGD 522 (787)
Q Consensus 446 ~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~---~t~~~li~~~~~~g~ 522 (787)
+.+..|+++.|++.|.+.+.-++.+...||.-..+|--+|+.++|++-+++..+..+ .-.. ..|.--...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag-~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAG-DQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHhCc
Confidence 566778888888888888877778888888888888888888888888888877531 1122 223333345677888
Q ss_pred HHHHHHHHHHHHHcC
Q 003913 523 FVKAEKIYDLMCLKK 537 (787)
Q Consensus 523 ~~~A~~~~~~m~~~g 537 (787)
.+.|..=|+...+-|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 888888888877655
No 248
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=91.81 E-value=13 Score=35.80 Aligned_cols=223 Identities=17% Similarity=0.077 Sum_probs=155.9
Q ss_pred hHHHHHHHHHHHHHcCCcc-CHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChHHHH
Q 003913 275 YLQQAEFIFHNLLTSGLEI-QKDIYSGLIWLHSYQDNIDKERISLLKKEMQQA-GFEEGKEVLLSVLRVCAKEGDVEDAE 352 (787)
Q Consensus 275 ~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~A~ 352 (787)
....+...+.......... ....+.... ..+...+....+...+...... ........+......+...+....+.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLA--LALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHH--HHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 4445555555554433321 123333333 5566777788888777776653 23445567777888888899999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHH-HHHHcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003913 353 KTWLRLLESDNGIPTPAFVYKME-AYAKIGEFMKSLEIFREMQERLG--SASVPAYHKIIELLCKAEETELTESLMKEFV 429 (787)
Q Consensus 353 ~~~~~m~~~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~ 429 (787)
+.+.........+ ......... .+...|+++.|...|.+...... ......+......+...++.+.|...+.+..
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 9999988865443 223333334 79999999999999999865321 1233445555555778899999999999998
Q ss_pred HcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 003913 430 ETGMKP-LMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ 501 (787)
Q Consensus 430 ~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 501 (787)
+.. .. ....+..+...+...+..+.|...+.......+.....+..+...+...|..++|...+.+.....
T Consensus 195 ~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 195 KLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred hhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 753 23 478889999999999999999999999887444445556666666667788999999999998864
No 249
>PRK11906 transcriptional regulator; Provisional
Probab=91.75 E-value=16 Score=39.30 Aligned_cols=150 Identities=11% Similarity=0.032 Sum_probs=97.2
Q ss_pred hHHHHHHHHHHHHc-CCCCCH-HHHHHHHHHHHh---------cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003913 383 FMKSLEIFREMQER-LGSASV-PAYHKIIELLCK---------AEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLG 451 (787)
Q Consensus 383 ~~~A~~~~~~m~~~-g~~p~~-~t~~~li~~~~~---------~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g 451 (787)
.+.|+.+|.+.... ...|+- ..|..+..++.. .....+|.++-++..+.+ .-|..+...+..+....+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 45677778777621 233432 233333222221 234456777777777765 567888888888888888
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 003913 452 MHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYD 531 (787)
Q Consensus 452 ~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~ 531 (787)
+++.|..+|+....-.+....+|......+.-+|+.++|.+.+++..+....+--.......++.|+.++ .++|+++|-
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHHh
Confidence 8999999999988765666677777777777789999999999997775422222333344455676665 577777765
Q ss_pred HHH
Q 003913 532 LMC 534 (787)
Q Consensus 532 ~m~ 534 (787)
+-.
T Consensus 432 ~~~ 434 (458)
T PRK11906 432 KET 434 (458)
T ss_pred hcc
Confidence 433
No 250
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.73 E-value=2.5 Score=41.80 Aligned_cols=86 Identities=14% Similarity=0.104 Sum_probs=42.6
Q ss_pred cCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHhcCCHHH
Q 003913 415 AEETELTESLMKEFVETGM--KPLMPSYINLTNMYLNLGMHDRLHLAFSECLE---KCRPNRTIYGIYLESLKNAGNIEK 489 (787)
Q Consensus 415 ~g~~~~A~~l~~~m~~~g~--~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~---~~~p~~~~~~~li~~~~~~g~~~~ 489 (787)
.|++..|...|...++..- .-....+.-|..++...|++++|..+|..+.+ ..+.-+...--|.....+.|+.++
T Consensus 154 sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~ 233 (262)
T COG1729 154 SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDE 233 (262)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHH
Confidence 3445555555555554320 01123444455555555555555555555554 122233444555555555666666
Q ss_pred HHHHHHHhhhC
Q 003913 490 AEEIFNHMHSD 500 (787)
Q Consensus 490 A~~l~~~m~~~ 500 (787)
|..+|++..++
T Consensus 234 A~atl~qv~k~ 244 (262)
T COG1729 234 ACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHH
Confidence 66666666555
No 251
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.53 E-value=1.8 Score=43.41 Aligned_cols=79 Identities=13% Similarity=0.104 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-----cCCccCHHHH
Q 003913 471 RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL-----KKYEIESAWM 545 (787)
Q Consensus 471 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~~~p~~~ 545 (787)
..++..++..+...|+++.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|.|...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d--p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD--PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 3466777888888888888888888888875 55788888888888888888888888887765 3544555443
Q ss_pred HHHHHH
Q 003913 546 EKLDYV 551 (787)
Q Consensus 546 ~~l~~~ 551 (787)
..|..+
T Consensus 231 ~~y~~~ 236 (280)
T COG3629 231 ALYEEI 236 (280)
T ss_pred HHHHHH
Confidence 444433
No 252
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=90.93 E-value=0.68 Score=31.83 Aligned_cols=28 Identities=11% Similarity=0.185 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 003913 473 IYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (787)
+|..+...|.+.|++++|+++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445555555555555555555555554
No 253
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=90.90 E-value=26 Score=37.95 Aligned_cols=87 Identities=15% Similarity=0.095 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC-HHHH
Q 003913 434 KPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRP--NRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVN-TRSC 510 (787)
Q Consensus 434 ~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~-~~t~ 510 (787)
.|-..+-..|..++-+.|+.++|.+.|.+|.+..+. +..+...||..|...+.+.++..++.+-.+.. .+.. ..+|
T Consensus 256 ~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~-lpkSAti~Y 334 (539)
T PF04184_consen 256 NVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS-LPKSATICY 334 (539)
T ss_pred chhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc-CCchHHHHH
Confidence 333444456777777889999999999999874333 45578889999999999999999999876543 2222 3566
Q ss_pred HHHHHHHHcCC
Q 003913 511 NIILSAYLSSG 521 (787)
Q Consensus 511 ~~li~~~~~~g 521 (787)
+..+-.+...+
T Consensus 335 TaALLkaRav~ 345 (539)
T PF04184_consen 335 TAALLKARAVG 345 (539)
T ss_pred HHHHHHHHhhc
Confidence 66554433333
No 254
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.77 E-value=23 Score=40.19 Aligned_cols=330 Identities=12% Similarity=0.072 Sum_probs=180.6
Q ss_pred HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCCh--hHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCc
Q 003913 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKF--AKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPV 230 (787)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~--~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~ 230 (787)
.+...+.+..|.++-.|+...- ..+..+|.....-+.+..+. +++.+.+++=...-..|. ++|..+.+--. .
T Consensus 446 Rl~~r~~Y~vaIQva~~l~~p~--~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~-iSy~~iA~~Ay---~ 519 (829)
T KOG2280|consen 446 RLVDRHLYSVAIQVAKLLNLPE--SQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPG-ISYAAIARRAY---Q 519 (829)
T ss_pred HHHhcchhHHHHHHHHHhCCcc--ccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCc-eeHHHHHHHHH---h
Confidence 3456788999999999886542 22367788888888776433 233333333222223444 55555544333 5
Q ss_pred CCCHHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhh
Q 003913 231 QGCLDEACSIYNRMIQLGGYQ---PRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSY 307 (787)
Q Consensus 231 ~g~~~~A~~l~~~m~~~~g~~---pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 307 (787)
.|+.+-|..+++.=.....-. -+..-+...+.-+... |+.+....++-.+...-. ...+...+
T Consensus 520 ~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies------~d~~Li~~Vllhlk~~~~---~s~l~~~l----- 585 (829)
T KOG2280|consen 520 EGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIES------GDTDLIIQVLLHLKNKLN---RSSLFMTL----- 585 (829)
T ss_pred cCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhc------CCchhHHHHHHHHHHHHH---HHHHHHHH-----
Confidence 999999999887443321111 1222344555555554 577777777666543211 11111111
Q ss_pred ccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH-H----hCCCCCCHHHHHHHHHHHHHcCC
Q 003913 308 QDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRL-L----ESDNGIPTPAFVYKMEAYAKIGE 382 (787)
Q Consensus 308 ~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m-~----~~~~~~~~~~~~~li~~~~~~g~ 382 (787)
.+.-.|..+|.+..+.. |..+ +-+.|-...+...+-.++-+- . ..+..|+ .....+.+.+...
T Consensus 586 ---~~~p~a~~lY~~~~r~~---~~~~---l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~ 653 (829)
T KOG2280|consen 586 ---RNQPLALSLYRQFMRHQ---DRAT---LYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKE 653 (829)
T ss_pred ---HhchhhhHHHHHHHHhh---chhh---hhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhh
Confidence 11334555665554421 1111 112222222222222221111 0 1122222 2223344444333
Q ss_pred h----------HHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003913 383 F----------MKSLEIFREMQE-RLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLG 451 (787)
Q Consensus 383 ~----------~~A~~~~~~m~~-~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g 451 (787)
. .+-+.+++.+.. .|..-.--|.+--+.-+...|+..+|.++-.+.+ -||...|-.-+.+++..+
T Consensus 654 ~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~ 729 (829)
T KOG2280|consen 654 KSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIK 729 (829)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhh
Confidence 1 111222333322 2322333345556666777888888888776654 578888888888899988
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 003913 452 MHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYD 531 (787)
Q Consensus 452 ~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~ 531 (787)
++++-+++-+.+. .+.-|.-.+.+|.+.|+.++|.+.+.+.... . -...+|.+.|++.+|.++--
T Consensus 730 kweeLekfAkskk-----sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l------~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 730 KWEELEKFAKSKK-----SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL------Q----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred hHHHHHHHHhccC-----CCCCchhHHHHHHhcccHHHHhhhhhccCCh------H----HHHHHHHHhccHHHHHHHHH
Confidence 8888777665543 2455666788888999999999888776432 1 45677888888888887655
Q ss_pred HH
Q 003913 532 LM 533 (787)
Q Consensus 532 ~m 533 (787)
+-
T Consensus 795 ~~ 796 (829)
T KOG2280|consen 795 EH 796 (829)
T ss_pred Hh
Confidence 43
No 255
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=90.50 E-value=4.1 Score=44.41 Aligned_cols=134 Identities=18% Similarity=0.213 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003913 332 KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIEL 411 (787)
Q Consensus 332 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 411 (787)
..-.+.++.-+-+.|..+.|.++-.. .. .-.+...++|+++.|.++-++. .+...|..|...
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~ 356 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDE 356 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHH
Confidence 44477888888888888888876532 21 2355667888888888765433 266788888888
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003913 412 LCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAE 491 (787)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~ 491 (787)
..+.|+++.|.+.|.+..+ +..|+-.|.-.|+.+...++.+....... +|....++.-.|++++..
T Consensus 357 AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~-----~n~af~~~~~lgd~~~cv 422 (443)
T PF04053_consen 357 ALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD-----INIAFQAALLLGDVEECV 422 (443)
T ss_dssp HHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT------HHHHHHHHHHHT-HHHHH
T ss_pred HHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC-----HHHHHHHHHHcCCHHHHH
Confidence 8888888888888877553 56777778888887777777666554211 445555555667777777
Q ss_pred HHHHHh
Q 003913 492 EIFNHM 497 (787)
Q Consensus 492 ~l~~~m 497 (787)
+++.+-
T Consensus 423 ~lL~~~ 428 (443)
T PF04053_consen 423 DLLIET 428 (443)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 776654
No 256
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=90.44 E-value=1 Score=30.97 Aligned_cols=40 Identities=15% Similarity=0.239 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 003913 439 SYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYL 478 (787)
Q Consensus 439 t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li 478 (787)
++..+..+|...|++++|+++|+.+++..+-|...|..|.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4556667777777777777777777765566666665554
No 257
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=90.39 E-value=19 Score=35.41 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=19.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003913 335 LLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAY 377 (787)
Q Consensus 335 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 377 (787)
-..++-++-+.+++++|....++..+.-+......|..-|.++
T Consensus 74 ~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgL 116 (254)
T COG4105 74 QLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGL 116 (254)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Confidence 3344444445555555555555554443332233333333333
No 258
>PRK11906 transcriptional regulator; Provisional
Probab=90.10 E-value=9.3 Score=41.03 Aligned_cols=121 Identities=9% Similarity=0.027 Sum_probs=90.7
Q ss_pred ChHHHHHHHHHHHH-cCCCCC-HHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 003913 417 ETELTESLMKEFVE-TGMKPL-MPSYINLTNMYLNL---------GMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAG 485 (787)
Q Consensus 417 ~~~~A~~l~~~m~~-~g~~p~-~~t~~~li~~~~~~---------g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g 485 (787)
..+.|..+|.+... +.+.|+ ...|..+..++... ....+|.+.-+...+..+-|..+...+..++.-.|
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 35678888998883 345665 44555554444332 23556777777777766788999888888888889
Q ss_pred CHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHH
Q 003913 486 NIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESA 543 (787)
Q Consensus 486 ~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~ 543 (787)
+++.|..+|++....+ |....+|......+.-+|+.++|.+.+++..+ .+|.
T Consensus 353 ~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr----LsP~ 404 (458)
T PRK11906 353 QAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDKSLQ----LEPR 404 (458)
T ss_pred chhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc----cCch
Confidence 9999999999999975 34466777777778889999999999999765 6775
No 259
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=90.04 E-value=6.5 Score=34.06 Aligned_cols=87 Identities=15% Similarity=0.047 Sum_probs=38.8
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCHH---HHHHHHHHHHhcCCH
Q 003913 413 CKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE--KCRPNRT---IYGIYLESLKNAGNI 487 (787)
Q Consensus 413 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~--~~~p~~~---~~~~li~~~~~~g~~ 487 (787)
+..|+++.|++.|.+.+.. .+-....||.-..++--.|+.++|+.-+++.++ |.+ ... .|---...|-..|+-
T Consensus 54 aE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhCch
Confidence 3444444444444444432 122344444444444444444444444444443 111 111 122223344555666
Q ss_pred HHHHHHHHHhhhCC
Q 003913 488 EKAEEIFNHMHSDQ 501 (787)
Q Consensus 488 ~~A~~l~~~m~~~~ 501 (787)
+.|..-|+...+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 66666666665555
No 260
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=89.72 E-value=28 Score=36.30 Aligned_cols=297 Identities=11% Similarity=-0.018 Sum_probs=179.5
Q ss_pred HHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHH
Q 003913 217 TFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKD 296 (787)
Q Consensus 217 ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 296 (787)
.|.+|-.|+... -.|+-..|.++-.+-.+. +.-|..-.-.++.+-..... |+.+.|.+-|+.|... |..-
T Consensus 84 gyqALStGliAa-gAGda~lARkmt~~~~~l--lssDqepLIhlLeAQaal~e----G~~~~Ar~kfeAMl~d---PEtR 153 (531)
T COG3898 84 GYQALSTGLIAA-GAGDASLARKMTARASKL--LSSDQEPLIHLLEAQAALLE----GDYEDARKKFEAMLDD---PETR 153 (531)
T ss_pred HHHHHhhhhhhh-ccCchHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHhc----CchHHHHHHHHHHhcC---hHHH
Confidence 355555555422 367888887776666543 55566555556665443322 6888888888888752 1111
Q ss_pred HHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHH--HHH
Q 003913 297 IYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEG-KEVLLSVLRVCAKEGDVEDAEKTWLRLLESD-NGIPTPA--FVY 372 (787)
Q Consensus 297 ~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~--~~~ 372 (787)
....--+.....+.|+.+.|...-++.-. .-|. .....+++...|..|+++.|.++.+.-.+.. +.+++.- -..
T Consensus 154 llGLRgLyleAqr~GareaAr~yAe~Aa~--~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAv 231 (531)
T COG3898 154 LLGLRGLYLEAQRLGAREAARHYAERAAE--KAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAV 231 (531)
T ss_pred HHhHHHHHHHHHhcccHHHHHHHHHHHHh--hccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHH
Confidence 11111111334566777777776665543 3444 4567888999999999999999988766543 2333321 112
Q ss_pred HHHHHHH---cCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003913 373 KMEAYAK---IGEFMKSLEIFREMQERLGSASVPAY-HKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYL 448 (787)
Q Consensus 373 li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~-~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~ 448 (787)
|+.+-+. .-+...|...-.+..+ +.||.+-- ..-..++.+.|++.++-.+++.+-+..-.|+. . ++..+.
T Consensus 232 LLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a--~lY~~a 305 (531)
T COG3898 232 LLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--A--LLYVRA 305 (531)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--H--HHHHHh
Confidence 3322221 1234444444443332 45665532 23347888999999999999999886544442 2 222344
Q ss_pred hcCCHHHHHHHHHHHHh--cC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcC-CCHH
Q 003913 449 NLGMHDRLHLAFSECLE--KC-RPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSS-GDFV 524 (787)
Q Consensus 449 ~~g~~~~a~~~~~~m~~--~~-~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~-g~~~ 524 (787)
+.|+ .++.-++...+ .. +.|..+--.+..+-...|++..|..--+..... .|....|..|.+.-... |+-.
T Consensus 306 r~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~---~pres~~lLlAdIeeAetGDqg 380 (531)
T COG3898 306 RSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE---APRESAYLLLADIEEAETGDQG 380 (531)
T ss_pred cCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh---CchhhHHHHHHHHHhhccCchH
Confidence 5554 22222333222 22 445667777778888889998888777776664 58888888888765544 9999
Q ss_pred HHHHHHHHHHHc
Q 003913 525 KAEKIYDLMCLK 536 (787)
Q Consensus 525 ~A~~~~~~m~~~ 536 (787)
++...+-+..+.
T Consensus 381 ~vR~wlAqav~A 392 (531)
T COG3898 381 KVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHHhcC
Confidence 999988887754
No 261
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.33 E-value=3.7 Score=41.23 Aligned_cols=78 Identities=12% Similarity=0.090 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-----CCCCCCCHHHHHH
Q 003913 438 PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHS-----DQTIGVNTRSCNI 512 (787)
Q Consensus 438 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~~~~~p~~~t~~~ 512 (787)
.++..++..+...|+.+.+...++....-.+-+...|..|+.+|.+.|+...|+..|+.+.+ .| +.|-..+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlg-i~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELG-IDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcC-CCccHHHHHH
Confidence 45666777777777777777777777776677778888888888888888888888877654 45 7777777666
Q ss_pred HHHH
Q 003913 513 ILSA 516 (787)
Q Consensus 513 li~~ 516 (787)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5555
No 262
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.03 E-value=4.5 Score=40.08 Aligned_cols=102 Identities=18% Similarity=0.124 Sum_probs=78.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC-HHHHHHHH
Q 003913 439 SYINLTNMYLNLGMHDRLHLAFSECLEKCRPN---RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVN-TRSCNIIL 514 (787)
Q Consensus 439 t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~-~~t~~~li 514 (787)
.|+.-+.. .+.|++..|...|...+++.+-+ ...+--|...+...|++++|..+|..+.+...-.|- ..+.--|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 56665554 45667999999999998854433 345666899999999999999999999886422222 36778888
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCCccCH
Q 003913 515 SAYLSSGDFVKAEKIYDLMCLKKYEIES 542 (787)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~~~g~~~~p 542 (787)
....+.|+.++|...|++..+ .|+-.+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k-~YP~t~ 249 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIK-RYPGTD 249 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHH-HCCCCH
Confidence 889999999999999999996 454333
No 263
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.69 E-value=29 Score=34.99 Aligned_cols=146 Identities=9% Similarity=0.030 Sum_probs=87.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 003913 374 MEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMH 453 (787)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 453 (787)
.......|+..+|..+|.......-. +...--.++.+|...|+.+.|..++..+-..--.........-|..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 44566778888888888887765322 34455567888888899999988888765432112222222233444444433
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCC
Q 003913 454 DRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSG 521 (787)
Q Consensus 454 ~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g 521 (787)
.+...+-...-. .+-|...--.|...|...|+.++|.+.+-.+.+++.---|...-..|+..+.--|
T Consensus 220 ~~~~~l~~~~aa-dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 220 PEIQDLQRRLAA-DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CCHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 333333333222 2447777778888888888888888887777665311223444455555555444
No 264
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=88.24 E-value=9.2 Score=34.07 Aligned_cols=71 Identities=15% Similarity=0.215 Sum_probs=37.5
Q ss_pred hccCCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003913 307 YQDNIDKERISLLKKEMQQAGFEE---GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYA 378 (787)
Q Consensus 307 ~~~~g~~~~a~~l~~~m~~~g~~p---~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 378 (787)
..+.|++.+|.+.|+.+... .+. ....--.++.+|.+.+++++|...+++.++..+...-+-|...+.+++
T Consensus 20 ~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 34455566666666665543 111 223344566666666666666666666666554433344444444444
No 265
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=87.83 E-value=14 Score=32.96 Aligned_cols=53 Identities=8% Similarity=-0.034 Sum_probs=25.0
Q ss_pred hcCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 003913 449 NLGMHDRLHLAFSECLEKCR---PNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ 501 (787)
Q Consensus 449 ~~g~~~~a~~~~~~m~~~~~---p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 501 (787)
+.|++++|.+.|+.+....+ -...+--.|+.+|-+.|++++|...+++.++.+
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 44445555555555444221 122334444555555555555555555555543
No 266
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=87.56 E-value=1.2 Score=29.04 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=20.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003913 509 SCNIILSAYLSSGDFVKAEKIYDLMC 534 (787)
Q Consensus 509 t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (787)
+|..|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888888888888888888855
No 267
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=87.15 E-value=0.79 Score=29.47 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=12.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHH
Q 003913 468 RPNRTIYGIYLESLKNAGNIEKAE 491 (787)
Q Consensus 468 ~p~~~~~~~li~~~~~~g~~~~A~ 491 (787)
+-|..+|+.|...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 445555555555555555555553
No 268
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=87.11 E-value=25 Score=32.48 Aligned_cols=135 Identities=16% Similarity=0.113 Sum_probs=82.9
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003913 387 LEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEK 466 (787)
Q Consensus 387 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 466 (787)
.++++.+.+.+++|+...|..+|..+.+.|+... +..++..++-+|.......+-.+.. ....+.++=-.|.+.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 3455666677888888888888888888887654 4555566666776655555433332 223344443344331
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 467 CRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 467 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
. ...+..++..+...|++-+|+.+.+...... ...-..++.+-.+.+|...=..+|+-..+
T Consensus 88 L---~~~~~~iievLL~~g~vl~ALr~ar~~~~~~-----~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 L---GTAYEEIIEVLLSKGQVLEALRYARQYHKVD-----SVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred h---hhhHHHHHHHHHhCCCHHHHHHHHHHcCCcc-----cCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 1256667788888999999999888764432 12224456666677766555555555544
No 269
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=86.62 E-value=9.4 Score=35.86 Aligned_cols=63 Identities=14% Similarity=0.176 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003913 368 PAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASV--PAYHKIIELLCKAEETELTESLMKEFVE 430 (787)
Q Consensus 368 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~li~~~~~~g~~~~A~~l~~~m~~ 430 (787)
..+..+.+-|++.|+.++|++.|.++.+....+.. ..+-.+|......+++..+...+.+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34555666777777777777777776665433332 2345566666666666666666555543
No 270
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=86.33 E-value=1.4 Score=28.63 Aligned_cols=26 Identities=19% Similarity=0.211 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhh
Q 003913 473 IYGIYLESLKNAGNIEKAEEIFNHMH 498 (787)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~l~~~m~ 498 (787)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888888888888888888744
No 271
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.27 E-value=1.5 Score=27.95 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 508 RSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 508 ~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
.+|..+...|...|++++|+..|++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3455666666666666666666666654
No 272
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=86.04 E-value=14 Score=34.75 Aligned_cols=97 Identities=12% Similarity=0.103 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCHHHHHH--
Q 003913 403 PAYHKIIELLCKAEETELTESLMKEFVETGMKPL--MPSYINLTNMYLNLGMHDRLHLAFSECLE--KCRPNRTIYGI-- 476 (787)
Q Consensus 403 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~--~~~p~~~~~~~-- 476 (787)
..+..+..-|++.|+.+.|.+.|.++.+....+. ...+..+|....-.+++..+.....+... ....|...-|-
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3577788889999999999999999888655544 45677788888888888888888777665 11112222221
Q ss_pred HHH--HHHhcCCHHHHHHHHHHhhh
Q 003913 477 YLE--SLKNAGNIEKAEEIFNHMHS 499 (787)
Q Consensus 477 li~--~~~~~g~~~~A~~l~~~m~~ 499 (787)
... .+...|++.+|-+.|-+...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCc
Confidence 111 22335778887777766543
No 273
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.84 E-value=69 Score=36.40 Aligned_cols=181 Identities=17% Similarity=0.073 Sum_probs=112.7
Q ss_pred hHHHHHHHHHHHHHcCCccCHHHHHHHHHHhh-hccCCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHhcC
Q 003913 275 YLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHS-YQDNIDKERISLLKKEMQQ-------AGFEEGKEVLLSVLRVCAKEG 346 (787)
Q Consensus 275 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~-~~~~g~~~~a~~l~~~m~~-------~g~~p~~~t~~~li~~~~~~g 346 (787)
....|.+.++...+.|..-... ...++...+ +....+.+.|+..|+.+.+ .| +.....-+-.+|.+..
T Consensus 227 ~~~~a~~~~~~~a~~g~~~a~~-~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~ 302 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLGHSEAQY-ALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGL 302 (552)
T ss_pred hhhHHHHHHHHHHhhcchHHHH-HHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCC
Confidence 3678999999998888643222 223333344 7788899999999998877 55 3334556666666643
Q ss_pred -----ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HhcC
Q 003913 347 -----DVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKI---GEFMKSLEIFREMQERLGSASVPAYHKIIELL--CKAE 416 (787)
Q Consensus 347 -----~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~--~~~g 416 (787)
+.+.|..++...-+.|. |+.... +...|... .+...|.++|...-..|..+ ..-+.+++-.. ....
T Consensus 303 ~~~~~d~~~A~~~~~~aA~~g~-~~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~-A~~~la~~y~~G~gv~r 378 (552)
T KOG1550|consen 303 GVEKIDYEKALKLYTKAAELGN-PDAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGHIL-AIYRLALCYELGLGVER 378 (552)
T ss_pred CCccccHHHHHHHHHHHHhcCC-chHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCChH-HHHHHHHHHHhCCCcCC
Confidence 66779999998888884 333332 33333332 35789999999998887542 22222222111 1234
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003913 417 ETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE 465 (787)
Q Consensus 417 ~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 465 (787)
+...|..++.+..+.| .|-..--...+..+.. +..+.+.-.+..+.+
T Consensus 379 ~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~ 425 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAE 425 (552)
T ss_pred CHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHH
Confidence 7788999999998888 4332222333334444 666666666665554
No 274
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=85.42 E-value=40 Score=33.28 Aligned_cols=171 Identities=15% Similarity=0.075 Sum_probs=96.6
Q ss_pred HHhcCChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhc---
Q 003913 342 CAKEGDVEDAEKTWLRLLESDNG--IPTPAFVYKMEAYAKIGEFMKSLEIFREMQER-LGSASVPAYHKIIELLCKA--- 415 (787)
Q Consensus 342 ~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~li~~~~~~--- 415 (787)
-.+.|++++|.+.|+.+....+- -...+--.++-++-+.+++++|+..+++.... +-.|| .-|..-|.+++.-
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs~~~~i 122 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLSYFFQI 122 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhccC
Confidence 34679999999999999876432 12445556788889999999999999998765 33333 3344445555432
Q ss_pred ----CChHH---HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH-H-HHHHHHHHhcCC
Q 003913 416 ----EETEL---TESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTI-Y-GIYLESLKNAGN 486 (787)
Q Consensus 416 ----g~~~~---A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~-~-~~li~~~~~~g~ 486 (787)
.+... |..-|+++++. -||. .-..+|......+.. ... + ..+..-|.+.|.
T Consensus 123 ~~~~rDq~~~~~A~~~f~~~i~r--yPnS-------------~Ya~dA~~~i~~~~d-----~LA~~Em~IaryY~kr~~ 182 (254)
T COG4105 123 DDVTRDQSAARAAFAAFKELVQR--YPNS-------------RYAPDAKARIVKLND-----ALAGHEMAIARYYLKRGA 182 (254)
T ss_pred CccccCHHHHHHHHHHHHHHHHH--CCCC-------------cchhhHHHHHHHHHH-----HHHHHHHHHHHHHHHhcC
Confidence 23333 34444444432 2321 111122222111111 001 1 123466677777
Q ss_pred HHHHHHHHHHhhhCCCCCCCH---HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 487 IEKAEEIFNHMHSDQTIGVNT---RSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 487 ~~~A~~l~~~m~~~~~~~p~~---~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
+..|..-+++|.+.- +-.. ...-.|..+|.+.|..++|.+.-.-+..
T Consensus 183 ~~AA~nR~~~v~e~y--~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 183 YVAAINRFEEVLENY--PDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred hHHHHHHHHHHHhcc--ccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 777777777777652 2222 3444555677777777777766655543
No 275
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=85.22 E-value=50 Score=34.20 Aligned_cols=202 Identities=12% Similarity=0.098 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhC--CCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-cCCCCC---HH
Q 003913 333 EVLLSVLRVCAKEGDVEDAEKTWLRLLES--DNG---IPTPAFVYKMEAYAKIGEFMKSLEIFREMQE-RLGSAS---VP 403 (787)
Q Consensus 333 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~---~~ 403 (787)
.+|..+..+.+..|.++++...--.-.+. ... .-...|-.+..++-+.-++.+++.+-..-.. .|..|. -.
T Consensus 44 ~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq 123 (518)
T KOG1941|consen 44 RVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQ 123 (518)
T ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccch
Confidence 46667777788888877766532211111 000 0112333444444444444444444333221 233221 12
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCHHH
Q 003913 404 AYHKIIELLCKAEETELTESLMKEFVETGMK-----PLMPSYINLTNMYLNLGMHDRLHLAFSECLE-----KCRPNRTI 473 (787)
Q Consensus 404 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-----p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~p~~~~ 473 (787)
...+|..++...+.++++++.|+...+---. ....+|..|...|.+..++++|.-...+..+ +...-..-
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 3344667777788899999999887762111 1246788999999999999998877766554 22222223
Q ss_pred HHH-----HHHHHHhcCCHHHHHHHHHHhhh----CCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003913 474 YGI-----YLESLKNAGNIEKAEEIFNHMHS----DQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (787)
Q Consensus 474 ~~~-----li~~~~~~g~~~~A~~l~~~m~~----~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (787)
|.. |.-+|-..|++..|.+..++..+ .|.-.........+.+.|...|+.+.|..-|+...
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 333 34466778888888888777543 44111123445577788999999999888777654
No 276
>PF14528 LAGLIDADG_3: LAGLIDADG-like domain; PDB: 2CW7_A 2CW8_A 2VS8_F 2VS7_G 1B24_A 1DQ3_A 2DCH_X.
Probab=84.96 E-value=2.9 Score=32.92 Aligned_cols=61 Identities=18% Similarity=0.131 Sum_probs=39.7
Q ss_pred hcCCcccCCCc----EEEEccCCHHHHHHHHHHHhhCCCceEEE---ecCcEEEEEEeCCchHHHHHhc
Q 003913 680 MYGGHRTSVGD----ILLKLKVSSEGIALVFKTLKARSLDCRVK---KKGRVFWIGFLGSNSTLFWKLI 741 (787)
Q Consensus 680 m~~g~~~~~g~----~~~~~~g~~~e~~~l~~~l~~~gl~~~~~---~~~~~~~i~~~~~~~~~~~~lv 741 (787)
..||+....+. +.+++ .+.+=+..+...|..-||.+++. +.+..|++.|..++..+|.+.|
T Consensus 9 d~DG~v~~~~~~~~~i~~~~-~s~~ll~~v~~lL~~lGi~~~i~~~~~~~~~y~l~i~~~~~~~f~~~I 76 (77)
T PF14528_consen 9 DGDGSVSKNRRKSVRISISS-KSKELLEDVQKLLLRLGIKASIYEKKRKKGSYRLRISGKSLKRFLEKI 76 (77)
T ss_dssp HHHEEEECCSECEEEEEEEE-S-HHHHHHHHHHHHHTT--EEEEEEECTTTEEEEEEECHHHHHHHHHT
T ss_pred cCCccEECCCCcEEEEEEEE-CCHHHHHHHHHHHHHCCCeeEEEEEcCCCceEEEEECchHHHHHHHHh
Confidence 34555544442 33333 56666666666677669999997 4455799999999999998876
No 277
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=84.89 E-value=5.9 Score=32.33 Aligned_cols=61 Identities=10% Similarity=0.050 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 003913 419 ELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLE 479 (787)
Q Consensus 419 ~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~ 479 (787)
-++.+-++.+....+.|++.+..+.+++|-+.+++..|.++|+.+...+..+...|..+++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lq 84 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHH
Confidence 3455556666666777888888888888888888888888887776555445556666554
No 278
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=84.57 E-value=52 Score=37.93 Aligned_cols=217 Identities=14% Similarity=0.109 Sum_probs=90.4
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHc---CChH
Q 003913 309 DNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDN-GIPTPAFVYKMEAYAKI---GEFM 384 (787)
Q Consensus 309 ~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~---g~~~ 384 (787)
-.|+++.|.+.+-+ ..+...|.+.+...+.-|. -+......-..+..... .|...-+..||..|++. .+..
T Consensus 270 LtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~g---LL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~~td~~ 344 (613)
T PF04097_consen 270 LTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYG---LLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFEITDPR 344 (613)
T ss_dssp HTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTTT-HH
T ss_pred HHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcC---CCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHhccCHH
Confidence 35667777777655 2233334444444444332 22222221122322211 11124567789999884 5677
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHH-HHHhcCChHHHHHHHHHHHHcC---------------CC-CCHHHH---HHHH
Q 003913 385 KSLEIFREMQERLGSASVPAYHKIIE-LLCKAEETELTESLMKEFVETG---------------MK-PLMPSY---INLT 444 (787)
Q Consensus 385 ~A~~~~~~m~~~g~~p~~~t~~~li~-~~~~~g~~~~A~~l~~~m~~~g---------------~~-p~~~t~---~~li 444 (787)
+|.++|--+....-+.....+...+. .....++++ .++..+...| +. +..... ....
T Consensus 345 ~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~---~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~~~A 421 (613)
T PF04097_consen 345 EALQYLYLICLFKDPEQRNLFHECLRELVLETREFD---LLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIEQAA 421 (613)
T ss_dssp HHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HH---HHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHH---HHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHHHHH
Confidence 88888776654322111222222221 112222111 1221111111 22 122222 2233
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH-HHHhcCC-----------HHHHHHHHHHhhhCCC----C-CCCH
Q 003913 445 NMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLE-SLKNAGN-----------IEKAEEIFNHMHSDQT----I-GVNT 507 (787)
Q Consensus 445 ~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~-~~~~~g~-----------~~~A~~l~~~m~~~~~----~-~p~~ 507 (787)
.-+...|++++|..+|....+- ..-+...|.++. +...... ...|..+.+.....+. + +.+.
T Consensus 422 ~~~e~~g~~~dAi~Ly~La~~~-d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~~~~ 500 (613)
T PF04097_consen 422 REAEERGRFEDAILLYHLAEEY-DKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVSRKNR 500 (613)
T ss_dssp HHHHHCT-HHHHHHHHHHTT-H-HHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-HHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhccHHHH
Confidence 4456678888888888765420 001112232222 2222222 4556666665544321 1 2234
Q ss_pred HHHHHHHHH-----HHcCCCHHHHHHHHHHHH
Q 003913 508 RSCNIILSA-----YLSSGDFVKAEKIYDLMC 534 (787)
Q Consensus 508 ~t~~~li~~-----~~~~g~~~~A~~~~~~m~ 534 (787)
.|+..|+.. +.++|++++|++.++++.
T Consensus 501 ~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~ 532 (613)
T PF04097_consen 501 ETFQLLLDLAEFFDLYHAGQYEQALDIIEKLD 532 (613)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 566666543 568999999999988775
No 279
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=84.03 E-value=28 Score=35.88 Aligned_cols=188 Identities=16% Similarity=0.099 Sum_probs=113.7
Q ss_pred CChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHH-------HHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003913 346 GDVEDAEKTWLRLLESD--NGIPTPAFVYKMEAYAKIGEFMKSLEIF-------REMQERLGSASVPAYHKIIELLCKAE 416 (787)
Q Consensus 346 g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~-------~~m~~~g~~p~~~t~~~li~~~~~~g 416 (787)
.+.++|...|.+.+.+- ..---.+|..+..+.+..|.+++++..- .+..+.. .-...|..+.+++-+..
T Consensus 20 ~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~--~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 20 NQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSD--FLLEAYLNLARSNEKLC 97 (518)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 44455555554443321 0012345667788888888888775532 2222210 01235556666666666
Q ss_pred ChHHHHHHHHHHHH-cCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCC----CHHHHHHHHHHHHhcCC
Q 003913 417 ETELTESLMKEFVE-TGMKP---LMPSYINLTNMYLNLGMHDRLHLAFSECLE--KCRP----NRTIYGIYLESLKNAGN 486 (787)
Q Consensus 417 ~~~~A~~l~~~m~~-~g~~p---~~~t~~~li~~~~~~g~~~~a~~~~~~m~~--~~~p----~~~~~~~li~~~~~~g~ 486 (787)
++.+++.+-+.-.. .|..| -.....++..++...+.++++++.|+...+ .... ...+|-.|...|.+..+
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 66666666554443 23333 124555677888888899999999999876 2222 34588999999999999
Q ss_pred HHHHHHHHHHhhhCC-CCC-CC------HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 487 IEKAEEIFNHMHSDQ-TIG-VN------TRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 487 ~~~A~~l~~~m~~~~-~~~-p~------~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
+++|.-+..+..+.- .+. -| ..+...|.-++...|....|.+.-++..+
T Consensus 178 ~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~k 234 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMK 234 (518)
T ss_pred hhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 999887776654320 011 11 12334556678888998888888887654
No 280
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.58 E-value=9.7 Score=38.30 Aligned_cols=99 Identities=9% Similarity=0.033 Sum_probs=60.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 003913 365 IPTPAFVYKMEAYAKIGEFMKSLEIFREMQER---LGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYI 441 (787)
Q Consensus 365 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 441 (787)
..+.+...++..-....+++.+...+-++... ...|+...+ +.++-| -.-++++++.++..=++.|+-||.++++
T Consensus 62 ~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irll-lky~pq~~i~~l~npIqYGiF~dqf~~c 139 (418)
T KOG4570|consen 62 VSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFTFC 139 (418)
T ss_pred cceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHH-HccChHHHHHHHhCcchhccccchhhHH
Confidence 34444445555555566777777777666532 112222221 223322 2235667777777777778888888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 003913 442 NLTNMYLNLGMHDRLHLAFSECLE 465 (787)
Q Consensus 442 ~li~~~~~~g~~~~a~~~~~~m~~ 465 (787)
.+|+.+.+.+++.+|.++.-.|..
T Consensus 140 ~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 140 LLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHH
Confidence 888888888887777777666654
No 281
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.52 E-value=89 Score=35.73 Aligned_cols=310 Identities=12% Similarity=0.081 Sum_probs=176.7
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003913 184 TKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRA 263 (787)
Q Consensus 184 ~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~ 263 (787)
..+|+-+...+.+..|+++-..+...-.. +...|.....-+... ..-.-+++++..++=... ...|. ++|..+-.-
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~-~d~~d~~vld~I~~kls~-~~~~~-iSy~~iA~~ 516 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQ-SDKMDEEVLDKIDEKLSA-KLTPG-ISYAAIARR 516 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhc-cCccchHHHHHHHHHhcc-cCCCc-eeHHHHHHH
Confidence 45788888999999999998888654222 245666666666631 122234444444443332 23444 445554444
Q ss_pred HHcCCCCCChhhHHHHHHHHHHHHHcCCcc----CHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003913 264 LVSKPGGLSKYYLQQAEFIFHNLLTSGLEI----QKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVL 339 (787)
Q Consensus 264 ~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p----~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li 339 (787)
.... |+.+.|..+++.=...+... +..-+... +.-....|+.+-...++..|... .+...|...+
T Consensus 517 Ay~~------GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~A--L~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~l 585 (829)
T KOG2280|consen 517 AYQE------GRFELARKLLELEPRSGEQVPLLLKMKDSSLA--LKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMTL 585 (829)
T ss_pred HHhc------CcHHHHHHHHhcCCCccchhHHHhccchHHHH--HHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHHH
Confidence 4443 68999988886433222110 01111122 24556778888877777776653 1222232222
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH-H-----HHcCCCCCHHHHHHHHHHHH
Q 003913 340 RVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFRE-M-----QERLGSASVPAYHKIIELLC 413 (787)
Q Consensus 340 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-m-----~~~g~~p~~~t~~~li~~~~ 413 (787)
.+.-.|..+|.+..+.. |..+ +-+.|-+ ++-.++...|.. - ...|..|+..+ ...++.
T Consensus 586 ------~~~p~a~~lY~~~~r~~---~~~~---l~d~y~q-~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~---~a~~~a 649 (829)
T KOG2280|consen 586 ------RNQPLALSLYRQFMRHQ---DRAT---LYDFYNQ-DDNHQALASFHLQASYAAETIEGRIPALKT---AANAFA 649 (829)
T ss_pred ------HhchhhhHHHHHHHHhh---chhh---hhhhhhc-ccchhhhhhhhhhhhhhhhhhcccchhHHH---HHHHHh
Confidence 34556777777665532 1111 1222222 222222222211 0 01233344332 334444
Q ss_pred hcCChH---HH-------HHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 003913 414 KAEETE---LT-------ESLMKEFVE-TGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLK 482 (787)
Q Consensus 414 ~~g~~~---~A-------~~l~~~m~~-~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~ 482 (787)
+..... +| +.+.+.+.. .|....--+.+--+.-+...|+..+|.++-.+.. -||-..|--=+.+++
T Consensus 650 ~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk---ipdKr~~wLk~~aLa 726 (829)
T KOG2280|consen 650 KSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK---IPDKRLWWLKLTALA 726 (829)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC---CcchhhHHHHHHHHH
Confidence 443311 11 122222222 2334444566666777888999999999887765 789999999999999
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003913 483 NAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (787)
Q Consensus 483 ~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (787)
..+++++-+++-+.+.. +.-|.-.+.+|.+.|+.++|.+++.+..
T Consensus 727 ~~~kweeLekfAkskks-------PIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 727 DIKKWEELEKFAKSKKS-------PIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred hhhhHHHHHHHHhccCC-------CCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 99999987777666542 3456677889999999999999999875
No 282
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=83.12 E-value=39 Score=31.24 Aligned_cols=131 Identities=11% Similarity=0.132 Sum_probs=64.7
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 003913 318 LLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERL 397 (787)
Q Consensus 318 ~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 397 (787)
+..+.+.+.|+.|+...+..+++.+.+.|++..-. .+.+.++-+|.......+-.+. +....+.++=-+|..+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-
Confidence 45555556667777777777777777777655433 3334444444444333322222 2333344444444432
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003913 398 GSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSE 462 (787)
Q Consensus 398 ~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~ 462 (787)
=...+..++..+...|++-+|.++.+...... ......++.+..+.++...-..+|+-
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~~----~~~~~~fLeAA~~~~D~~lf~~V~~f 145 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKVD----SVPARKFLEAAANSNDDQLFYAVFRF 145 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcc----cCCHHHHHHHHHHcCCHHHHHHHHHH
Confidence 01134455666667777777766665542211 11223455555555554443333333
No 283
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=82.85 E-value=25 Score=33.13 Aligned_cols=94 Identities=16% Similarity=0.150 Sum_probs=64.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHc
Q 003913 445 NMYLNLGMHDRLHLAFSECLEKCRPNR-----TIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS 519 (787)
Q Consensus 445 ~~~~~~g~~~~a~~~~~~m~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~ 519 (787)
+-+.+.|++++|..-|...++.|++.. +.|..-..++.+.+.++.|++-..+.++.+ +........-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHh
Confidence 345667777777777777777665543 345555667778888888888888888765 2222333333457788
Q ss_pred CCCHHHHHHHHHHHHHcCCccCHHH
Q 003913 520 SGDFVKAEKIYDLMCLKKYEIESAW 544 (787)
Q Consensus 520 ~g~~~~A~~~~~~m~~~g~~~~p~~ 544 (787)
...+++|+.=|..+++ .+|..
T Consensus 181 ~ek~eealeDyKki~E----~dPs~ 201 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILE----SDPSR 201 (271)
T ss_pred hhhHHHHHHHHHHHHH----hCcch
Confidence 8888888888888887 56653
No 284
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.44 E-value=95 Score=35.30 Aligned_cols=191 Identities=15% Similarity=0.121 Sum_probs=107.3
Q ss_pred hhHHHHHHHHHHhcCCCccCHHHHHHHHHH-HHccCChhHHHHHHHHHHH-------CCCCCCHhHHHHHHHHHhcCC-c
Q 003913 160 NETGFRVYEWMMQQHWYRFDFALATKLADY-MGKERKFAKCRDIFDDIIN-------QGRVPSEMTFHILIVAYLSAP-V 230 (787)
Q Consensus 160 ~~~A~~~~~~m~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~f~~m~~-------~g~~pd~~ty~~li~~~~~~~-~ 230 (787)
...|.+.++...+.|....-.........+ ++...+++.|...|....+ .| +....+-+-..|.... -
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 567999999999988332222222233333 4567899999999999877 55 3445666666676210 0
Q ss_pred CC-CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhcc
Q 003913 231 QG-CLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQD 309 (787)
Q Consensus 231 ~g-~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 309 (787)
.. +.+.|+.+|.+.-.. | .|+....-..+.-. |. ...+...|.+.|....+.|..+ ...+-.+....+..-
T Consensus 305 ~~~d~~~A~~~~~~aA~~-g-~~~a~~~lg~~~~~----g~-~~~d~~~A~~yy~~Aa~~G~~~-A~~~la~~y~~G~gv 376 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAEL-G-NPDAQYLLGVLYET----GT-KERDYRRAFEYYSLAAKAGHIL-AIYRLALCYELGLGV 376 (552)
T ss_pred ccccHHHHHHHHHHHHhc-C-CchHHHHHHHHHHc----CC-ccccHHHHHHHHHHHHHcCChH-HHHHHHHHHHhCCCc
Confidence 22 678899999988775 2 45544332222221 21 1136789999999998888642 111111111122223
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 003913 310 NIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDN 363 (787)
Q Consensus 310 ~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 363 (787)
..+...|...+++..+.| .|-..--...+..+.. ++.+.+.-.+..+.+.|.
T Consensus 377 ~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 377 ERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred CCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 445666777777666666 2222222223333333 566666655555555553
No 285
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.37 E-value=39 Score=30.82 Aligned_cols=93 Identities=10% Similarity=-0.076 Sum_probs=53.7
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHH
Q 003913 447 YLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKA 526 (787)
Q Consensus 447 ~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A 526 (787)
-.+.++.+++..++..+.---+-....-..-...+.+.|++.+|+.+|+++.+.. |......+|+..|.....-..=
T Consensus 20 al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~---~~~p~~kALlA~CL~~~~D~~W 96 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA---PGFPYAKALLALCLYALGDPSW 96 (160)
T ss_pred HHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC---CCChHHHHHHHHHHHHcCChHH
Confidence 3455677777777777654212222222333445677888889999888887764 4545555666655554443444
Q ss_pred HHHHHHHHHcCCccCHHH
Q 003913 527 EKIYDLMCLKKYEIESAW 544 (787)
Q Consensus 527 ~~~~~~m~~~g~~~~p~~ 544 (787)
..+-+++.+.+ .+|+.
T Consensus 97 r~~A~evle~~--~d~~a 112 (160)
T PF09613_consen 97 RRYADEVLESG--ADPDA 112 (160)
T ss_pred HHHHHHHHhcC--CChHH
Confidence 44555566544 45553
No 286
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=81.46 E-value=94 Score=34.59 Aligned_cols=83 Identities=14% Similarity=0.173 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHHHHHH
Q 003913 160 NETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACS 239 (787)
Q Consensus 160 ~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~~A~~ 239 (787)
.+.+..++..+... +|.-...|-.....=.+.|..+.+.++|++-.. |+.-++..|...+.-++. ..|+.+....
T Consensus 61 ~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n--~~~d~~~lr~ 135 (577)
T KOG1258|consen 61 VDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKN--NNGDPETLRD 135 (577)
T ss_pred HHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhc--cCCCHHHHHH
Confidence 34555555555543 233333445555555566777777777776654 344455566666665554 4566666666
Q ss_pred HHHHHHHh
Q 003913 240 IYNRMIQL 247 (787)
Q Consensus 240 l~~~m~~~ 247 (787)
+|+.....
T Consensus 136 ~fe~A~~~ 143 (577)
T KOG1258|consen 136 LFERAKSY 143 (577)
T ss_pred HHHHHHHh
Confidence 66666654
No 287
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.42 E-value=13 Score=37.49 Aligned_cols=103 Identities=14% Similarity=0.102 Sum_probs=76.0
Q ss_pred CccCHHHHHHHHHHHHccCChhHHHHHHHHHHHC---CCCCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCC
Q 003913 176 YRFDFALATKLADYMGKERKFAKCRDIFDDIINQ---GRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQP 252 (787)
Q Consensus 176 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---g~~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p 252 (787)
.+..+.+-..++..-....++++|...+-+++.. ...|+. +-.+.++-+. .-+.++++.++..=++- |+-|
T Consensus 60 ~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll----ky~pq~~i~~l~npIqY-GiF~ 133 (418)
T KOG4570|consen 60 LPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL----KYDPQKAIYTLVNPIQY-GIFP 133 (418)
T ss_pred CCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH----ccChHHHHHHHhCcchh-cccc
Confidence 4556666677777777788899999988887764 122332 2334455554 45677999998888875 8999
Q ss_pred CHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcC
Q 003913 253 RPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSG 290 (787)
Q Consensus 253 d~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~ 290 (787)
|.++++.+|+.+.+. +++.+|.++.-.|+...
T Consensus 134 dqf~~c~l~D~flk~------~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKK------ENYKDAASVVTEVMMQE 165 (418)
T ss_pred chhhHHHHHHHHHhc------ccHHHHHHHHHHHHHHH
Confidence 999999999999987 68999888887776554
No 288
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=80.79 E-value=18 Score=29.90 Aligned_cols=60 Identities=10% Similarity=0.057 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 003913 420 LTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLE 479 (787)
Q Consensus 420 ~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~ 479 (787)
+..+-+..+....+.|.+.+..+.+++|-+.+++..|.++|+.+...+.+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 445555566666778888888888888888888888888888877655544446666654
No 289
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=80.56 E-value=4.3 Score=41.11 Aligned_cols=81 Identities=12% Similarity=-0.009 Sum_probs=59.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHH
Q 003913 445 NMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFV 524 (787)
Q Consensus 445 ~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~ 524 (787)
+-|.+.|.+++|+..|...+.-.+-|.++|..-..+|.+..++..|+.-.+..+..+ ...+.+|++.+...
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd---------~~Y~KAYSRR~~AR 175 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD---------KLYVKAYSRRMQAR 175 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh---------HHHHHHHHHHHHHH
Confidence 569999999999999988776555588999999999999999998888887777653 12356666665554
Q ss_pred HHHHHHHHHH
Q 003913 525 KAEKIYDLMC 534 (787)
Q Consensus 525 ~A~~~~~~m~ 534 (787)
+++....+..
T Consensus 176 ~~Lg~~~EAK 185 (536)
T KOG4648|consen 176 ESLGNNMEAK 185 (536)
T ss_pred HHHhhHHHHH
Confidence 4444444443
No 290
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=80.40 E-value=3.5 Score=25.99 Aligned_cols=27 Identities=15% Similarity=0.236 Sum_probs=14.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 509 SCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 509 t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
.|..+...|.+.|++++|++.|++.++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555555555555555555555554
No 291
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.37 E-value=47 Score=32.26 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=12.7
Q ss_pred HcCCCHHHHHHHHHHHHHc
Q 003913 518 LSSGDFVKAEKIYDLMCLK 536 (787)
Q Consensus 518 ~~~g~~~~A~~~~~~m~~~ 536 (787)
...+++.+|+++|++....
T Consensus 165 a~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777653
No 292
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.97 E-value=49 Score=38.17 Aligned_cols=141 Identities=13% Similarity=0.040 Sum_probs=92.4
Q ss_pred hhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChH
Q 003913 305 HSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFM 384 (787)
Q Consensus 305 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 384 (787)
.-+.+.|++++|..-|-+-... ++| ..+|.-|....++.+-..+++.+.+.|+. +...-+.|+.+|.+.++.+
T Consensus 376 d~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~ 448 (933)
T KOG2114|consen 376 DYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVE 448 (933)
T ss_pred HHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchH
Confidence 3456788888888777655432 333 23555666777778888888888888875 5666778899999999998
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003913 385 KSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSEC 463 (787)
Q Consensus 385 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m 463 (787)
+-.++.+.-. .|.. ..-....+..|-+.+-.++|..+-.+... .... +--.+-..+++++|.+.+..+
T Consensus 449 kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~v---l~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 449 KLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWV---LDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHH---HHHHHHHhcCHHHHHHHHhcC
Confidence 8777665544 2221 11133466777777777777666554432 1222 223345678888888888775
No 293
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=79.96 E-value=4.2 Score=25.77 Aligned_cols=29 Identities=17% Similarity=0.109 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 003913 472 TIYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 472 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (787)
.+|..+...|...|++++|+..|++.++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 45667777777777777777777777664
No 294
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.56 E-value=54 Score=37.87 Aligned_cols=183 Identities=11% Similarity=0.107 Sum_probs=98.4
Q ss_pred CHHHHHHHHHHHH----hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 003913 331 GKEVLLSVLRVCA----KEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYH 406 (787)
Q Consensus 331 ~~~t~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 406 (787)
|..+...+...|+ +.|++++|...|-+-+.. ++| ..+|.-|....++.+-..+++.+.++|.. +...-+
T Consensus 363 d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhtt 435 (933)
T KOG2114|consen 363 DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTT 435 (933)
T ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHH
Confidence 4444444444443 577777777766554432 111 23566666667777777777777777765 444556
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 003913 407 KIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGN 486 (787)
Q Consensus 407 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~ 486 (787)
.|+.+|.+.++.++-.++.+..- .|.. ..-.-..+..|-+.+-+++|..+-.... .+......++ -..|+
T Consensus 436 lLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~----~he~vl~ill---e~~~n 505 (933)
T KOG2114|consen 436 LLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFK----KHEWVLDILL---EDLHN 505 (933)
T ss_pred HHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhc----cCHHHHHHHH---HHhcC
Confidence 67777877777776665555433 2211 1113344555666666666655544332 2333333333 34577
Q ss_pred HHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 487 IEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 487 ~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
+++|++.+..|.-.. .-+....|...+ . ....++..+++-+...
T Consensus 506 y~eAl~yi~slp~~e-~l~~l~kyGk~L---l-~h~P~~t~~ili~~~t 549 (933)
T KOG2114|consen 506 YEEALRYISSLPISE-LLRTLNKYGKIL---L-EHDPEETMKILIELIT 549 (933)
T ss_pred HHHHHHHHhcCCHHH-HHHHHHHHHHHH---H-hhChHHHHHHHHHHHh
Confidence 888888887765332 222333333322 2 2345555555555543
No 295
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=78.36 E-value=80 Score=31.93 Aligned_cols=19 Identities=11% Similarity=0.158 Sum_probs=10.7
Q ss_pred CCCCCHHHHHHHHHHHHcC
Q 003913 249 GYQPRPSLHNSLFRALVSK 267 (787)
Q Consensus 249 g~~pd~~t~~~ll~~~~~~ 267 (787)
|+.++...--+++.++.-.
T Consensus 141 ~F~e~Er~KLA~~Tal~l~ 159 (412)
T KOG2297|consen 141 LFEENERKKLAMLTALLLS 159 (412)
T ss_pred ccCHHHHHHHHHHHHHHHh
Confidence 4666666555555555443
No 296
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=77.44 E-value=6.2 Score=40.03 Aligned_cols=93 Identities=12% Similarity=0.012 Sum_probs=64.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCH
Q 003913 409 IELLCKAEETELTESLMKEFVETGMKP-LMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNI 487 (787)
Q Consensus 409 i~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~ 487 (787)
.+-|.+.|.+++|...|..-+. +.| |.++|..-..+|.+...+..|+.-....+.....-+..|..-..+--..|+.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 5789999999999999998776 456 8999999999999999998887766655432222223333333333334566
Q ss_pred HHHHHHHHHhhhCCCCCCC
Q 003913 488 EKAEEIFNHMHSDQTIGVN 506 (787)
Q Consensus 488 ~~A~~l~~~m~~~~~~~p~ 506 (787)
.+|.+-++...+. .|+
T Consensus 182 ~EAKkD~E~vL~L---EP~ 197 (536)
T KOG4648|consen 182 MEAKKDCETVLAL---EPK 197 (536)
T ss_pred HHHHHhHHHHHhh---Ccc
Confidence 6666666666653 465
No 297
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=77.38 E-value=5.2 Score=26.60 Aligned_cols=25 Identities=16% Similarity=0.260 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHh
Q 003913 473 IYGIYLESLKNAGNIEKAEEIFNHM 497 (787)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~l~~~m 497 (787)
+++.|...|...|++++|+.++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 4444455555555555555555444
No 298
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=77.23 E-value=89 Score=31.84 Aligned_cols=164 Identities=12% Similarity=0.203 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHcCChH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003913 368 PAFVYKMEAYAKIGEFM---KSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLT 444 (787)
Q Consensus 368 ~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li 444 (787)
.+...++.+|...+..+ +|.++++.+...... ....+.--+..+.+.++.+++.+.+.+|+..- .-....+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 35566788888877654 566677777544222 23444455677777899999999999999853 21233444444
Q ss_pred HHH---HhcCCHHHHHHHHHHHHh-cCCCCHHHH--HHHHHH---HHhc------CCHHHHHHHHHHhhhCCCCCCCHHH
Q 003913 445 NMY---LNLGMHDRLHLAFSECLE-KCRPNRTIY--GIYLES---LKNA------GNIEKAEEIFNHMHSDQTIGVNTRS 509 (787)
Q Consensus 445 ~~~---~~~g~~~~a~~~~~~m~~-~~~p~~~~~--~~li~~---~~~~------g~~~~A~~l~~~m~~~~~~~p~~~t 509 (787)
..+ .... ...|...+..++. .+.|....| -.++.. ..+. .+++...++++...+.-.-+.+..+
T Consensus 163 ~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 163 HHIKQLAEKS-PELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHhhC-cHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 444 4433 3456566666554 555544311 111111 1111 1255555666643332112223333
Q ss_pred HH---HH----HHHHHcCCCHHHHHHHHHHHH
Q 003913 510 CN---II----LSAYLSSGDFVKAEKIYDLMC 534 (787)
Q Consensus 510 ~~---~l----i~~~~~~g~~~~A~~~~~~m~ 534 (787)
-. +| ...+.+.+++++|.++|+-..
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 22 22 234567899999999998655
No 299
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=77.04 E-value=1e+02 Score=32.43 Aligned_cols=267 Identities=10% Similarity=0.064 Sum_probs=159.6
Q ss_pred ccCCcchHHHHH----HHhhcCChhHHHHHHHHHHhcCCCccCHHHH--HHHHHHHHccCChhHHHHHHHHHHHCCCCCC
Q 003913 141 WLRQEDGTYLAV----HCMRIRENETGFRVYEWMMQQHWYRFDFALA--TKLADYMGKERKFAKCRDIFDDIINQGRVPS 214 (787)
Q Consensus 141 ~~~p~~~t~~~~----~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd 214 (787)
-+..|.--..-+ ...-.|+.+.|.+-|+-|.... ..... -.|.-.--+.|..+.|+.+-+.--..-.. =
T Consensus 113 llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP----EtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l 187 (531)
T COG3898 113 LLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDP----ETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-L 187 (531)
T ss_pred hhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh----HHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-C
Confidence 344554444433 3345799999999999998653 22211 11222224678888888888776654322 3
Q ss_pred HhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCc
Q 003913 215 EMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSL--HNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLE 292 (787)
Q Consensus 215 ~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t--~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~ 292 (787)
...+.+++...| ..|+++.|+++.+.-++..-+.+++.- -..|+.+-+. ...+
T Consensus 188 ~WA~~AtLe~r~---~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~--------------------s~ld-- 242 (531)
T COG3898 188 PWAARATLEARC---AAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM--------------------SLLD-- 242 (531)
T ss_pred chHHHHHHHHHH---hcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH--------------------HHhc--
Confidence 467889999999 899999999999988765445666542 1122222111 0000
Q ss_pred cCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 003913 293 IQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEV-LLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFV 371 (787)
Q Consensus 293 p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 371 (787)
-+...|...-.+.. .+.||.+- -..-..++.+.|++.++-.+++.+-+..+.|+..
T Consensus 243 ------------------adp~~Ar~~A~~a~--KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia--- 299 (531)
T COG3898 243 ------------------ADPASARDDALEAN--KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA--- 299 (531)
T ss_pred ------------------CChHHHHHHHHHHh--hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH---
Confidence 01122222222221 24555432 2334567778888888888888888877665432
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHH-cCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003913 372 YKMEAYAKIGEFMKSLEIFREMQE-RLGSA-SVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLN 449 (787)
Q Consensus 372 ~li~~~~~~g~~~~A~~~~~~m~~-~g~~p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~ 449 (787)
++..+.+.|+. ++.-+++... ..++| |..+--.+..+-...|++..|..--+.... ..|....|..|.+.-..
T Consensus 300 -~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeA 374 (531)
T COG3898 300 -LLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEA 374 (531)
T ss_pred -HHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhh
Confidence 23334445543 3333332211 01233 456666777888888888887766655554 57888888888887654
Q ss_pred -cCCHHHHHHHHHHHHh
Q 003913 450 -LGMHDRLHLAFSECLE 465 (787)
Q Consensus 450 -~g~~~~a~~~~~~m~~ 465 (787)
.|+-.++...+.+..+
T Consensus 375 etGDqg~vR~wlAqav~ 391 (531)
T COG3898 375 ETGDQGKVRQWLAQAVK 391 (531)
T ss_pred ccCchHHHHHHHHHHhc
Confidence 4899999988888775
No 300
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.62 E-value=63 Score=29.84 Aligned_cols=133 Identities=14% Similarity=0.133 Sum_probs=79.6
Q ss_pred HHhhcCChhHHHHHHHHHHhcCCCccC-HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHh-HHHHHHHHHhcCCc
Q 003913 153 HCMRIRENETGFRVYEWMMQQHWYRFD-FALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEM-TFHILIVAYLSAPV 230 (787)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~-ty~~li~~~~~~~~ 230 (787)
-+++.+..++|+.-|..+.+.| +..- +...-......+..|+...|...|+++-.....|-.. -..-|=.+|... .
T Consensus 67 ~lA~~~k~d~Alaaf~~lektg-~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLv-D 144 (221)
T COG4649 67 KLAQENKTDDALAAFTDLEKTG-YGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLV-D 144 (221)
T ss_pred HHHHcCCchHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHh-c
Confidence 5667888899999999998887 3322 2222334455678889999999999987765555443 222233333322 6
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHcCCCCCChhhHHHHHHHHHHHHHcCCccCH
Q 003913 231 QGCLDEACSIYNRMIQLGGYQPRPSLHNSLFR-ALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQK 295 (787)
Q Consensus 231 ~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~-~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 295 (787)
+|.+++.....+-+-.. -.|-..+-.-.|. +-.+. |++..|.+.|..+......|..
T Consensus 145 ~gsy~dV~srvepLa~d--~n~mR~sArEALglAa~ka------gd~a~A~~~F~qia~Da~aprn 202 (221)
T COG4649 145 NGSYDDVSSRVEPLAGD--GNPMRHSAREALGLAAYKA------GDFAKAKSWFVQIANDAQAPRN 202 (221)
T ss_pred cccHHHHHHHhhhccCC--CChhHHHHHHHHhHHHHhc------cchHHHHHHHHHHHccccCcHH
Confidence 78888877776666442 1232222222222 22222 6888888888888765555543
No 301
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=76.26 E-value=6.1 Score=26.23 Aligned_cols=29 Identities=17% Similarity=0.254 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 507 TRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 507 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
..+++.|...|...|++++|+.++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 46889999999999999999999999875
No 302
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.80 E-value=67 Score=29.69 Aligned_cols=53 Identities=21% Similarity=0.246 Sum_probs=22.6
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003913 343 AKEGDVEDAEKTWLRLLESDNGIPT-PAFVYKMEAYAKIGEFMKSLEIFREMQE 395 (787)
Q Consensus 343 ~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~ 395 (787)
++.+..++|..-|..+.+.|...-. -.---+.......|+...|...|++.-.
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~ 122 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAA 122 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhc
Confidence 3445555555555555554432111 1111122333444555555555555443
No 303
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=75.72 E-value=64 Score=29.47 Aligned_cols=53 Identities=23% Similarity=0.243 Sum_probs=27.2
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 003913 343 AKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQER 396 (787)
Q Consensus 343 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 396 (787)
.+.++.+++..++..+.-..+.. ...-..-...+...|++.+|..+|+++...
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~-~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEF-PELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 34556666666666665543321 111111233455566666666666666544
No 304
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=75.44 E-value=24 Score=33.54 Aligned_cols=70 Identities=14% Similarity=-0.001 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHhcCCHHHH
Q 003913 420 LTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE----KCRPNRTIYGIYLESLKNAGNIEKA 490 (787)
Q Consensus 420 ~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~----~~~p~~~~~~~li~~~~~~g~~~~A 490 (787)
.|.+.|-.+...+.--++.....|..-|. ..+.+++..++...++ +-.+|+..+.+|+..|-+.|+++.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34444444444333333333333333332 3344444444444443 1144455555555555555555544
No 305
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=74.63 E-value=27 Score=30.66 Aligned_cols=92 Identities=15% Similarity=0.290 Sum_probs=49.4
Q ss_pred HHHHHhhccCCC-cchhhHHHHHHhhccccCC-----cchHHHHHHHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHH
Q 003913 114 AKLAWLCKELPS-HKGGTLVRILNAQKKWLRQ-----EDGTYLAVHCMRIRENETGFRVYEWMMQQHWYRFDFALATKLA 187 (787)
Q Consensus 114 ~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~p-----~~~t~~~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li 187 (787)
.-|.|+-...+. .....+..+|...-.-+.. ++.-|+-+.+.-+.....+..+|..|..+|...--...|....
T Consensus 27 ~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~~~~~if~~l~~~~IG~~~A~fY~~wA 106 (126)
T PF08311_consen 27 RYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSSDPREIFKFLYSKGIGTKLALFYEEWA 106 (126)
T ss_dssp HHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBSHHHHHHHHHHHHTTSTTBHHHHHHHH
T ss_pred HHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHccCHHHHHHHHHHcCccHHHHHHHHHHH
Confidence 456777655555 3333444444432211222 2333444423233344477777777777764444556677777
Q ss_pred HHHHccCChhHHHHHHHH
Q 003913 188 DYMGKERKFAKCRDIFDD 205 (787)
Q Consensus 188 ~~~~~~g~~~~A~~~f~~ 205 (787)
..+.+.|++.+|.++|+.
T Consensus 107 ~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 107 EFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHTT-HHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHh
Confidence 777777777777777754
No 306
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=74.60 E-value=83 Score=30.23 Aligned_cols=99 Identities=14% Similarity=0.061 Sum_probs=59.1
Q ss_pred hcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHH
Q 003913 156 RIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLD 235 (787)
Q Consensus 156 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~ 235 (787)
..|-+..|+-=|.....-. +.-..+||-|--.+...|+++.|.+.|+...+....-+-...|--|.-|. -|++.
T Consensus 77 SlGL~~LAR~DftQaLai~--P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY----~gR~~ 150 (297)
T COG4785 77 SLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY----GGRYK 150 (297)
T ss_pred hhhHHHHHhhhhhhhhhcC--CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeee----cCchH
Confidence 4455555555555555443 33345677777777888889999988888887643322233344444443 68888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHH
Q 003913 236 EACSIYNRMIQLGGYQPRPSLHNSL 260 (787)
Q Consensus 236 ~A~~l~~~m~~~~g~~pd~~t~~~l 260 (787)
-|.+-|-+.-+.+.-.|=...|--+
T Consensus 151 LAq~d~~~fYQ~D~~DPfR~LWLYl 175 (297)
T COG4785 151 LAQDDLLAFYQDDPNDPFRSLWLYL 175 (297)
T ss_pred hhHHHHHHHHhcCCCChHHHHHHHH
Confidence 8887777766644333433344333
No 307
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=74.05 E-value=7.5 Score=24.40 Aligned_cols=29 Identities=21% Similarity=0.157 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 003913 472 TIYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 472 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (787)
..|..+...|.+.|++++|++.|++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35566677777777777777777777664
No 308
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.32 E-value=1.2e+02 Score=31.31 Aligned_cols=154 Identities=6% Similarity=-0.014 Sum_probs=104.2
Q ss_pred ccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHH--HHHHHHHcCChH
Q 003913 308 QDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLES-DNGIPTPAFVY--KMEAYAKIGEFM 384 (787)
Q Consensus 308 ~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~--li~~~~~~g~~~ 384 (787)
-.+|...+|-..++++.+. .+-|...++-.=++|.-.|+.+.-...++++... +......+|.. ..-++..+|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 4566777888888888764 5557778888888899999999888888888765 32222333332 334455789999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003913 385 KSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVET---GMKPLMPSYINLTNMYLNLGMHDRLHLAFS 461 (787)
Q Consensus 385 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~li~~~~~~g~~~~a~~~~~ 461 (787)
+|.+.-++..+-+- -|.-+-.++...+--.|+..++.+.+.+-... +.-.-..-|-...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 99998888776532 25666777888888889999998877654331 100112223333444556688999999998
Q ss_pred HH
Q 003913 462 EC 463 (787)
Q Consensus 462 ~m 463 (787)
.-
T Consensus 272 ~e 273 (491)
T KOG2610|consen 272 RE 273 (491)
T ss_pred HH
Confidence 73
No 309
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=72.37 E-value=1.1e+02 Score=30.84 Aligned_cols=60 Identities=10% Similarity=0.275 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003913 365 IPTPAFVYKMEAYAKIGEFMKSLEIFREMQER-LGSASVPAYHKIIELLCKAEETELTESL 424 (787)
Q Consensus 365 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~A~~l 424 (787)
++..+...+|..+++.+++.+-.++++.-... +..-|...|..+|+.....|+..-...+
T Consensus 200 l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ki 260 (292)
T PF13929_consen 200 LTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKI 260 (292)
T ss_pred CChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHH
Confidence 34444444455555555555544444443322 2333444455555555555554433333
No 310
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=72.32 E-value=1.1e+02 Score=30.78 Aligned_cols=61 Identities=15% Similarity=0.201 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 473 IYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
+.+.....|..+|.+.+|.++.++...-+ +.+...|-.|+..+...|+--.|.+-+++|.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld--pL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD--PLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC--hhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 33445678889999999999999999876 56888999999999999998888888888764
No 311
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.68 E-value=93 Score=29.46 Aligned_cols=94 Identities=11% Similarity=0.091 Sum_probs=67.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHH
Q 003913 443 LTNMYLNLGMHDRLHLAFSECLEKCRPNRT-----IYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAY 517 (787)
Q Consensus 443 li~~~~~~g~~~~a~~~~~~m~~~~~p~~~-----~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~ 517 (787)
+...+..++++++|...++..+. .|--. +--.|.......|.+++|+.+++.....+ . .......-.+.+
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~--~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w--~~~~~elrGDil 169 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALA--QTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES-W--AAIVAELRGDIL 169 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHc--cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-H--HHHHHHHhhhHH
Confidence 34567788888888888887663 12222 23345567788999999999999887765 2 333444556789
Q ss_pred HcCCCHHHHHHHHHHHHHcCCccCHH
Q 003913 518 LSSGDFVKAEKIYDLMCLKKYEIESA 543 (787)
Q Consensus 518 ~~~g~~~~A~~~~~~m~~~g~~~~p~ 543 (787)
...|+-++|..-|+..++.+ .+|.
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~--~s~~ 193 (207)
T COG2976 170 LAKGDKQEARAAYEKALESD--ASPA 193 (207)
T ss_pred HHcCchHHHHHHHHHHHHcc--CChH
Confidence 99999999999999999865 4444
No 312
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=71.48 E-value=1.3 Score=39.92 Aligned_cols=83 Identities=17% Similarity=0.148 Sum_probs=43.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003913 338 VLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEE 417 (787)
Q Consensus 338 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 417 (787)
+|..+.+.+.......+++.+...+...+....+.++..|++.++.++..++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 34445555666666666666665554445666666666666666666666655511 11222334555555555
Q ss_pred hHHHHHHHHH
Q 003913 418 TELTESLMKE 427 (787)
Q Consensus 418 ~~~A~~l~~~ 427 (787)
+++|.-++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 5555544443
No 313
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=71.19 E-value=35 Score=32.41 Aligned_cols=74 Identities=12% Similarity=0.059 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003913 383 FMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVE---TGMKPLMPSYINLTNMYLNLGMHDRLH 457 (787)
Q Consensus 383 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~---~g~~p~~~t~~~li~~~~~~g~~~~a~ 457 (787)
-++|.+.|-.+...+.--++....+|...|. ..+.++|..++.+..+ .+-.+|+..+.+|+..|-+.|+.+.|-
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3567888888877765545555555444444 6678888888888776 233677888888888888888888763
No 314
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=70.58 E-value=1.4e+02 Score=31.14 Aligned_cols=45 Identities=16% Similarity=0.048 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003913 385 KSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVE 430 (787)
Q Consensus 385 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 430 (787)
..+.++++..+.+ +-+...+..++..+.+....++..+.++++..
T Consensus 49 ~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~ 93 (321)
T PF08424_consen 49 RKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLF 93 (321)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3344444444442 12344444455555555555555555555554
No 315
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.31 E-value=64 Score=35.83 Aligned_cols=133 Identities=15% Similarity=0.140 Sum_probs=83.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003913 334 VLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLC 413 (787)
Q Consensus 334 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 413 (787)
.-+.+.+.+-+.|..++|.++- +|... -.....+.|+++.|.++..+.. +..-|..|..+..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAAL 677 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHh
Confidence 4456666666777776666542 12211 2334456788888887766543 5567888888888
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003913 414 KAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEI 493 (787)
Q Consensus 414 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l 493 (787)
+.+++..|.+.|.+... |..|+-.+...|+-+....+-....+.-.. |...-+|...|+++++.++
T Consensus 678 ~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-----N~AF~~~~l~g~~~~C~~l 743 (794)
T KOG0276|consen 678 SAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN-----NLAFLAYFLSGDYEECLEL 743 (794)
T ss_pred hcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc-----chHHHHHHHcCCHHHHHHH
Confidence 88888888888877654 446666777777766554444444432222 2233455667888888887
Q ss_pred HHHhh
Q 003913 494 FNHMH 498 (787)
Q Consensus 494 ~~~m~ 498 (787)
+.+-.
T Consensus 744 Li~t~ 748 (794)
T KOG0276|consen 744 LISTQ 748 (794)
T ss_pred HHhcC
Confidence 76553
No 316
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=68.73 E-value=31 Score=33.07 Aligned_cols=71 Identities=10% Similarity=0.038 Sum_probs=36.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---cCCCCHHHHHHHHH
Q 003913 408 IIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE---KCRPNRTIYGIYLE 479 (787)
Q Consensus 408 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~---~~~p~~~~~~~li~ 479 (787)
.|+.+.+.+.+.+|+...+.-++.. +.|..+-..+++.||-.|++++|...++-+-+ ...+-..+|..+|.
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 3445555555666665555554432 33444555556666666666666555544433 23334445555554
No 317
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=68.65 E-value=7.5 Score=24.47 Aligned_cols=27 Identities=15% Similarity=0.171 Sum_probs=14.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 509 SCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 509 t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555555555555555555555543
No 318
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=68.64 E-value=65 Score=30.51 Aligned_cols=89 Identities=17% Similarity=0.123 Sum_probs=50.9
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 003913 412 LCKAEETELTESLMKEFVETGMKPL-----MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGN 486 (787)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~g~~p~-----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~ 486 (787)
+..+|++++|..-|.+.+.. +++. .+.|..-..++.+.+.++.|+.--.+.++..+......-.-..+|.+..+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 34556666666666655552 1221 23344445556666666666665555554323233333333557777788
Q ss_pred HHHHHHHHHHhhhCC
Q 003913 487 IEKAEEIFNHMHSDQ 501 (787)
Q Consensus 487 ~~~A~~l~~~m~~~~ 501 (787)
+++|++-|+++.+..
T Consensus 184 ~eealeDyKki~E~d 198 (271)
T KOG4234|consen 184 YEEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHHhC
Confidence 888888888888764
No 319
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=68.24 E-value=38 Score=27.83 Aligned_cols=62 Identities=13% Similarity=0.142 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003913 312 DKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKM 374 (787)
Q Consensus 312 ~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 374 (787)
|.-++.+-++.+....+.|+..+..+.+++|.+.+++..|.++++-++.+.- .+...|..++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~-~~~~~y~~~l 83 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG-AHKEIYPYIL 83 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc-CchhhHHHHH
Confidence 3445556666666677888888888888888888888888888887764321 1334555443
No 320
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=68.10 E-value=80 Score=28.38 Aligned_cols=38 Identities=13% Similarity=0.100 Sum_probs=24.8
Q ss_pred HHHHHcCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHH
Q 003913 321 KEMQQAGFEEGKEV--LLSVLRVCAKEGDVEDAEKTWLRL 358 (787)
Q Consensus 321 ~~m~~~g~~p~~~t--~~~li~~~~~~g~~~~A~~~~~~m 358 (787)
..|.+.+..++..+ .++++.-.+..+++.....+++.+
T Consensus 26 ~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l 65 (145)
T PF13762_consen 26 PYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHL 65 (145)
T ss_pred HHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 34455556665543 567777777777777777777766
No 321
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=67.96 E-value=69 Score=26.55 Aligned_cols=90 Identities=11% Similarity=0.066 Sum_probs=65.7
Q ss_pred cCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHHH
Q 003913 157 IRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDE 236 (787)
Q Consensus 157 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~~ 236 (787)
....++|..+-+|+...+ .....+--.-+..+...|++++|..+.+.+ ..||...|-+|-.. |.|..++
T Consensus 18 ~HcHqEA~tIAdwL~~~~--~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~-----rlGl~s~ 86 (115)
T TIGR02508 18 HHCHQEANTIADWLHLKG--ESEEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCEW-----RLGLGSA 86 (115)
T ss_pred chHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHHH-----hhccHHH
Confidence 445789999999998876 223334334455677899999999988877 46999999887665 5688888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHH
Q 003913 237 ACSIYNRMIQLGGYQPRPSLHNS 259 (787)
Q Consensus 237 A~~l~~~m~~~~g~~pd~~t~~~ 259 (787)
+..-+..|-.+ -.|....|..
T Consensus 87 l~~rl~rla~s--g~p~lq~Faa 107 (115)
T TIGR02508 87 LESRLNRLAAS--GDPRLQTFVA 107 (115)
T ss_pred HHHHHHHHHhC--CCHHHHHHHH
Confidence 88888888775 2566555543
No 322
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.70 E-value=58 Score=36.11 Aligned_cols=151 Identities=18% Similarity=0.113 Sum_probs=108.1
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003913 344 KEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTES 423 (787)
Q Consensus 344 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ 423 (787)
-.|+++.|..++-.+. ...-+.++..+.+.|-.++|+++- +|..- -.....+.|+++.|.+
T Consensus 598 mrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~ 658 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFD 658 (794)
T ss_pred hhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHH
Confidence 4577777776554433 234456777788888888887653 23322 1234467899999988
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC
Q 003913 424 LMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTI 503 (787)
Q Consensus 424 l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 503 (787)
+..+.. +..-|..|.++..+.+++..|.+.|.... -|..|+-.+...|+-+....+-....+.|
T Consensus 659 la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~--------d~~~LlLl~t~~g~~~~l~~la~~~~~~g-- 722 (794)
T KOG0276|consen 659 LAVEAN------SEVKWRQLGDAALSAGELPLASECFLRAR--------DLGSLLLLYTSSGNAEGLAVLASLAKKQG-- 722 (794)
T ss_pred HHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhc--------chhhhhhhhhhcCChhHHHHHHHHHHhhc--
Confidence 876643 46679999999999999999999998764 36678888888998887777777777777
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003913 504 GVNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (787)
Q Consensus 504 ~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (787)
+ + |.-.-+|...|+++++.+++.+-.
T Consensus 723 ~-~----N~AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 723 K-N----NLAFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred c-c----chHHHHHHHcCCHHHHHHHHHhcC
Confidence 1 2 233345778999999998887653
No 323
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=67.00 E-value=2e+02 Score=31.53 Aligned_cols=164 Identities=10% Similarity=0.054 Sum_probs=70.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003913 331 GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIE 410 (787)
Q Consensus 331 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 410 (787)
|.....+++..+...-...-.+.+..+|+.-|- +-..|-.++.+|..+ ..++-..+++++.+..+. |++.-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 334444555555555555555555555555442 344455555555555 344445555555444322 2222222222
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCC--C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHh
Q 003913 411 LLCKAEETELTESLMKEFVETGMKP--L---MPSYINLTNMYLNLGMHDRLHLAFSECLE--KCRPNRTIYGIYLESLKN 483 (787)
Q Consensus 411 ~~~~~g~~~~A~~l~~~m~~~g~~p--~---~~t~~~li~~~~~~g~~~~a~~~~~~m~~--~~~p~~~~~~~li~~~~~ 483 (787)
-|- .++.+.+..+|.+....=++- + ...|.-|+..- ..+.+....+...+.+ |...-.+.+.-+-.-|..
T Consensus 141 ~yE-kik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYE-KIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHH-HhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 222 244555555555544322110 0 01122211110 1223333333333333 333334444444455555
Q ss_pred cCCHHHHHHHHHHhhhCC
Q 003913 484 AGNIEKAEEIFNHMHSDQ 501 (787)
Q Consensus 484 ~g~~~~A~~l~~~m~~~~ 501 (787)
..++++|++++..+.+.+
T Consensus 218 ~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 218 NENWTEAIRILKHILEHD 235 (711)
T ss_pred ccCHHHHHHHHHHHhhhc
Confidence 555556655555555543
No 324
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.95 E-value=1.4e+02 Score=29.67 Aligned_cols=174 Identities=11% Similarity=0.132 Sum_probs=77.6
Q ss_pred CCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHhC---CC
Q 003913 290 GLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKE---VLLSVLRVCAKEGDVEDAEKTWLRLLES---DN 363 (787)
Q Consensus 290 ~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~---t~~~li~~~~~~g~~~~A~~~~~~m~~~---~~ 363 (787)
+..||++.-+......+.... ++++|+.-|.+..+..-+-... ...-+|..+.+.|++++....+.+|+.- .+
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~-~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKED-EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred CCCCCcchHhhhhcccccccc-CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 445555555544433333222 5566666666655432111122 2334566666666666666666655431 00
Q ss_pred --CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---
Q 003913 364 --GIPTPAFVYKMEAYAKIGEFMKSLEIFREMQE-----RLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGM--- 433 (787)
Q Consensus 364 --~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~--- 433 (787)
.-+..+.|++++--....+.+--.++|+.-.+ ++-+.--.|-+.|...|...+++.+-..+++++.++--
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 01233445555444444444433333332211 00000111223344555555555555555555543210
Q ss_pred -CC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003913 434 -KP-------LMPSYINLTNMYLNLGMHDRLHLAFSECL 464 (787)
Q Consensus 434 -~p-------~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 464 (787)
.. -...|..=|.+|....+-.....+|++.+
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHH
Confidence 00 12345555666666655555555665554
No 325
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=65.94 E-value=1.2e+02 Score=28.43 Aligned_cols=61 Identities=15% Similarity=0.060 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHhcC-----------CHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC
Q 003913 470 NRTIYGIYLESLKNAG-----------NIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKY 538 (787)
Q Consensus 470 ~~~~~~~li~~~~~~g-----------~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 538 (787)
...++.++..+|...+ .+++|.+.|++.... .|+..+|+.-+.... +|-++..++.+.+.
T Consensus 68 ~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~---~P~ne~Y~ksLe~~~------kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 68 KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE---DPNNELYRKSLEMAA------KAPELHMEIHKQGL 138 (186)
T ss_dssp -HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH----TT-HHHHHHHHHHH------THHHHHHHHHHSSS
T ss_pred hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc---CCCcHHHHHHHHHHH------hhHHHHHHHHHHHh
Confidence 3455555555554433 256677777777775 589999988887764 46777777776654
Q ss_pred c
Q 003913 539 E 539 (787)
Q Consensus 539 ~ 539 (787)
.
T Consensus 139 ~ 139 (186)
T PF06552_consen 139 G 139 (186)
T ss_dssp -
T ss_pred h
Confidence 3
No 326
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=65.32 E-value=19 Score=34.40 Aligned_cols=54 Identities=13% Similarity=0.210 Sum_probs=25.7
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 003913 478 LESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLM 533 (787)
Q Consensus 478 i~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m 533 (787)
|+.+.+.+.+.+|+...++-++.. |-|.-+-..++..||-.|+|++|..-++-.
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkak--Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAK--PTDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC--CccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 344444555555555555444442 233344444455555555555555444443
No 327
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=65.28 E-value=1.6e+02 Score=29.82 Aligned_cols=65 Identities=8% Similarity=0.105 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003913 398 GSASVPAYHKIIELLCKAEETELTESLMKEFVET-GMKPLMPSYINLTNMYLNLGMHDRLHLAFSE 462 (787)
Q Consensus 398 ~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~ 462 (787)
..++..+...+|..++..+++.+-.+++...... +..-|...|..+|+.....|+..-...+.++
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 3445555566666777777777666666665543 3444566666777777777766655555544
No 328
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=65.08 E-value=1.1e+02 Score=27.67 Aligned_cols=52 Identities=12% Similarity=-0.054 Sum_probs=27.6
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 003913 450 LGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ 501 (787)
Q Consensus 450 ~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 501 (787)
.++++++..+++.|.---+.....-..-...+...|++++|..+|++..+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 5566666666665543111112222222333456677777777777777664
No 329
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=63.03 E-value=2e+02 Score=30.14 Aligned_cols=64 Identities=13% Similarity=0.152 Sum_probs=40.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-C---CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 003913 436 LMPSYINLTNMYLNLGMHDRLHLAFSECLEKC-R---PNRTIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (787)
Q Consensus 436 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~-~---p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (787)
...++..++..+.+.|.++.|...+..+.... . ....+.-.-...+-..|+..+|+..+++...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34567777777777777777777777766511 1 1233344445566667777777777776665
No 330
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=62.15 E-value=19 Score=22.50 Aligned_cols=29 Identities=21% Similarity=0.155 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 003913 472 TIYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 472 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (787)
.+|..+...|...|++++|.+.|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35677777888888888888888877663
No 331
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.10 E-value=1.5e+02 Score=28.21 Aligned_cols=56 Identities=7% Similarity=0.025 Sum_probs=24.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003913 374 MEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVET 431 (787)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 431 (787)
.......|.+++|+.+++.....+.. ......-...+...|+-++|..-|...++.
T Consensus 133 Arvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 133 ARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 33444445555555555444433221 111122234444555555555555555444
No 332
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=61.85 E-value=4.7 Score=36.29 Aligned_cols=86 Identities=13% Similarity=0.111 Sum_probs=62.8
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcC
Q 003913 149 YLAVHCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSA 228 (787)
Q Consensus 149 ~~~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~ 228 (787)
.++-.+.+.+.++....+++.+...+ ...+....|.++..|++.+..++..++++.. +.+-...++..|-
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~-- 81 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKEN-KENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCE-- 81 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTS-TC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHH--
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcc-cccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHH--
Confidence 33345667788888999999999766 4567889999999999998889988888722 2244456677776
Q ss_pred CcCCCHHHHHHHHHHHH
Q 003913 229 PVQGCLDEACSIYNRMI 245 (787)
Q Consensus 229 ~~~g~~~~A~~l~~~m~ 245 (787)
+.|.+++|.-++.++.
T Consensus 82 -~~~l~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 82 -KHGLYEEAVYLYSKLG 97 (143)
T ss_dssp -TTTSHHHHHHHHHCCT
T ss_pred -hcchHHHHHHHHHHcc
Confidence 7788888888877653
No 333
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.65 E-value=3.5e+02 Score=32.40 Aligned_cols=40 Identities=13% Similarity=0.028 Sum_probs=20.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003913 374 MEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLC 413 (787)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 413 (787)
+-.|++....+-+..+++.+....-.++..-.+.++.-|+
T Consensus 598 Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 598 VLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred HHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 3344555555555555555554444444455555555444
No 334
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=61.25 E-value=13 Score=23.05 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=11.4
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhC
Q 003913 478 LESLKNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 478 i~~~~~~g~~~~A~~l~~~m~~~ 500 (787)
..+|.+.|++++|.+.|+++++.
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHH
Confidence 34444455555555555555443
No 335
>PF14527 LAGLIDADG_WhiA: WhiA LAGLIDADG-like domain; PDB: 3HYI_A 3HYJ_D.
Probab=60.81 E-value=16 Score=30.08 Aligned_cols=44 Identities=18% Similarity=0.208 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHhhCCCceEEEecCcEEEEEEeCCc-hHHHHHhc
Q 003913 698 SSEGIALVFKTLKARSLDCRVKKKGRVFWIGFLGSN-STLFWKLI 741 (787)
Q Consensus 698 ~~~e~~~l~~~l~~~gl~~~~~~~~~~~~i~~~~~~-~~~~~~lv 741 (787)
..+.+..+...|+..|+++++.+.++.|++|+...+ +..|..+|
T Consensus 30 ~~e~a~~l~~lL~~~~i~~k~~~r~~~~~vYlK~~e~I~dfL~~i 74 (93)
T PF14527_consen 30 DEEFAEQLKELLNKFGINAKIIKRKNKYVVYLKDSEQISDFLKLI 74 (93)
T ss_dssp -HHHHHHHHHHHHHH----EEEEESSEEEEEE--HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcCCCceeeeecCceEEEEcCHHHHHHHHHHc
Confidence 567888888888877999999888889999987653 56666665
No 336
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=60.69 E-value=5.4e+02 Score=34.29 Aligned_cols=306 Identities=12% Similarity=0.059 Sum_probs=155.1
Q ss_pred hcCChhHHHHHHHH----HHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcC
Q 003913 156 RIRENETGFRVYEW----MMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQ 231 (787)
Q Consensus 156 ~~~~~~~A~~~~~~----m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~ 231 (787)
+.+.+.+|...++. ..+.. .....|-.+...|+.-++++....+...-.. +...+.-++.-. ..
T Consensus 1395 rc~~y~RalmylEs~~~~ek~~~---~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~~qil~~e----~~ 1462 (2382)
T KOG0890|consen 1395 RCKAYARALMYLESHRSTEKEKE---TEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLYQQILEHE----AS 1462 (2382)
T ss_pred hhHHHHHHHHHHHHhccccchhH---HHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHHHHHHHHH----hh
Confidence 55778888888887 33322 2334455555599999999998888775222 333444444444 37
Q ss_pred CCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccC
Q 003913 232 GCLDEACSIYNRMIQLGGYQPR-PSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDN 310 (787)
Q Consensus 232 g~~~~A~~l~~~m~~~~g~~pd-~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 310 (787)
|+++.|...|+.+.+. .|+ ..+++-++...... |.+..+.-..+.... ...++.+..+.+- ..+.-+.
T Consensus 1463 g~~~da~~Cye~~~q~---~p~~~~~~~g~l~sml~~------~~l~t~i~~~dg~~~-~~se~~~~~~s~~-~eaaW~l 1531 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQK---DPDKEKHHSGVLKSMLAI------QHLSTEILHLDGLII-NRSEEVDELNSLG-VEAAWRL 1531 (2382)
T ss_pred ccHHHHHHHHHHhhcC---CCccccchhhHHHhhhcc------cchhHHHhhhcchhh-ccCHHHHHHHHHH-HHHHhhh
Confidence 9999999999999974 455 55666666554443 466665554443322 1222222222222 1333556
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHH--HHHHH--hcCChHHHHHHHHHHHhCCCCC---------CHHHHHHHHHHH
Q 003913 311 IDKERISLLKKEMQQAGFEEGKEVLLSV--LRVCA--KEGDVEDAEKTWLRLLESDNGI---------PTPAFVYKMEAY 377 (787)
Q Consensus 311 g~~~~a~~l~~~m~~~g~~p~~~t~~~l--i~~~~--~~g~~~~A~~~~~~m~~~~~~~---------~~~~~~~li~~~ 377 (787)
++++....... . -+..+|... ..... +..+.-.-....+.+.+.-+.| -...|..++..+
T Consensus 1532 ~qwD~~e~~l~---~----~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH 1604 (2382)
T KOG0890|consen 1532 SQWDLLESYLS---D----RNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLH 1604 (2382)
T ss_pred cchhhhhhhhh---c----ccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHH
Confidence 66666555443 1 122233322 11111 1111111112222222211110 113344444333
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHH------HHHHHH---HHHHhcCChHHHHHHHHHHHHcCCCCC-----HHHHHHH
Q 003913 378 AKIGEFMKSLEIFREMQERLGSASVP------AYHKII---ELLCKAEETELTESLMKEFVETGMKPL-----MPSYINL 443 (787)
Q Consensus 378 ~~~g~~~~A~~~~~~m~~~g~~p~~~------t~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~t~~~l 443 (787)
.-+..-.....++ ++.++.. -|..-+ ..+.+..++ .+.+-+-+......|+ ..+|...
T Consensus 1605 ~l~el~~~~~~l~------~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~ep--ILa~RRs~l~~~~~~~~~~~~ge~wLqs 1676 (2382)
T KOG0890|consen 1605 LLLELENSIEELK------KVSYDEDSANNSDNWKNRLERTQPSFRIKEP--ILAFRRSMLDLRMRSNLKSRLGECWLQS 1676 (2382)
T ss_pred HHHHHHHHHHHhh------ccCccccccccchhHHHHHHHhchhHHHHhH--HHHHHHHHHHHhccccccchhHHHHHHH
Confidence 3221111111111 1222211 122222 222221111 1111122222212222 5678888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 003913 444 TNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ 501 (787)
Q Consensus 444 i~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 501 (787)
.+..-+.|+++.|....-...+.-.| ..+--...-+-..|+...|+.++++..+..
T Consensus 1677 AriaR~aG~~q~A~nall~A~e~r~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1677 ARIARLAGHLQRAQNALLNAKESRLP--EIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHhcccHHHHHHHHHhhhhcccc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 88888899999998887777663333 445566777888999999999999988764
No 337
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=60.54 E-value=48 Score=27.57 Aligned_cols=61 Identities=10% Similarity=0.094 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003913 198 KCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRA 263 (787)
Q Consensus 198 ~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~ 263 (787)
+.++-++.+....+.|+.....+.+.+|- |-+++.-|+.+|+-.+.+ +.+....|..++.-
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcR---RvND~a~AVR~lE~iK~K--~~~~~~~Y~~~lqE 88 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACR---RVNDFALAVRILEGIKDK--CGNKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHH---HTT-HHHHHHHHHHHHHH--TTT-TTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHH---HhhhHHHHHHHHHHHHHH--ccChHHHHHHHHHH
Confidence 55666666666777788888888888887 778888888888887765 33333356555544
No 338
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=60.46 E-value=1.7e+02 Score=28.55 Aligned_cols=47 Identities=13% Similarity=0.168 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHH
Q 003913 468 RPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAY 517 (787)
Q Consensus 468 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~ 517 (787)
.|.+.....++..+.+ +++++|.+++.++-+.| +.|.. ..+++.+.+
T Consensus 236 ~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lg-ysp~D-ii~~~FRv~ 282 (333)
T KOG0991|consen 236 EPHPLLVKKMLQACLK-RNIDEALKILAELWKLG-YSPED-IITTLFRVV 282 (333)
T ss_pred CCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcC-CCHHH-HHHHHHHHH
Confidence 5777777777766554 67899999999988888 55532 333444443
No 339
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=60.43 E-value=3.1e+02 Score=31.39 Aligned_cols=333 Identities=14% Similarity=0.069 Sum_probs=155.8
Q ss_pred ccCHHHHHHHHHHHHccCChhHHHHHHHHHHHC-CCC--------CCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHh
Q 003913 177 RFDFALATKLADYMGKERKFAKCRDIFDDIINQ-GRV--------PSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQL 247 (787)
Q Consensus 177 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-g~~--------pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~ 247 (787)
.|....|..|.....+.-.++-|+..|-+.... |++ .+...-.+=|.+|. |++++|.++|-+|-++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~-----g~feeaek~yld~drr 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFY-----GEFEEAEKLYLDADRR 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhh-----cchhHhhhhhhccchh
Confidence 356678887777766667777777777655432 221 12223345567776 9999999999888654
Q ss_pred C---CCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHH------H
Q 003913 248 G---GYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERIS------L 318 (787)
Q Consensus 248 ~---g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~------~ 318 (787)
+ ++....--|-.++..+-.-.+.. +-+.-+..|+.|-.. -.....|.-....|...|+.+.-. +
T Consensus 764 DLAielr~klgDwfrV~qL~r~g~~d~---dD~~~e~A~r~ig~~----fa~~~~We~A~~yY~~~~~~e~~~ecly~le 836 (1189)
T KOG2041|consen 764 DLAIELRKKLGDWFRVYQLIRNGGSDD---DDEGKEDAFRNIGET----FAEMMEWEEAAKYYSYCGDTENQIECLYRLE 836 (1189)
T ss_pred hhhHHHHHhhhhHHHHHHHHHccCCCc---chHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhccchHhHHHHHHHHH
Confidence 2 01111222333333332211110 111222223333210 011122222233444444443322 2
Q ss_pred HHHHHHH--cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 003913 319 LKKEMQQ--AGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQER 396 (787)
Q Consensus 319 l~~~m~~--~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 396 (787)
.|.++.. ..++-|....-.+..++.+.|.-++|.+.|-+ .+. |- .-+..|...+++.+|.++-+...-.
T Consensus 837 ~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr---~s~-pk-----aAv~tCv~LnQW~~avelaq~~~l~ 907 (1189)
T KOG2041|consen 837 LFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR---RSL-PK-----AAVHTCVELNQWGEAVELAQRFQLP 907 (1189)
T ss_pred hhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh---ccC-cH-----HHHHHHHHHHHHHHHHHHHHhccch
Confidence 2222221 22344555666777777777777777765532 221 11 2344555555666666554432211
Q ss_pred CCCCCHHHH--------------HHHHHHHHhcCChHHHHHHHHHHHH----cCCCCCH----HHHHHH-HHHH------
Q 003913 397 LGSASVPAY--------------HKIIELLCKAEETELTESLMKEFVE----TGMKPLM----PSYINL-TNMY------ 447 (787)
Q Consensus 397 g~~p~~~t~--------------~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~~----~t~~~l-i~~~------ 447 (787)
.+.|. ---|.-+-+.|+.-.|.+++.+|.+ .+.+|-. ++..+| +.-+
T Consensus 908 ----qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~ 983 (1189)
T KOG2041|consen 908 ----QVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKE 983 (1189)
T ss_pred ----hHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11110 1123455666666666666666654 2333321 111111 1111
Q ss_pred ----HhcCCHHHHHHHHHHHH--------hcCCCCHHHHHHH--HHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHH
Q 003913 448 ----LNLGMHDRLHLAFSECL--------EKCRPNRTIYGIY--LESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNII 513 (787)
Q Consensus 448 ----~~~g~~~~a~~~~~~m~--------~~~~p~~~~~~~l--i~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~l 513 (787)
-+.|..++|..+++... +..-.....|.-+ ..--...|.++.|+..--.+..-..+-|....|..|
T Consensus 984 ~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySll 1063 (1189)
T KOG2041|consen 984 LRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLL 1063 (1189)
T ss_pred hhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHH
Confidence 11244445544333321 1111223344444 344455688888877654444322245666777766
Q ss_pred HHHHHcCCCHHHHHHHHHHHH
Q 003913 514 LSAYLSSGDFVKAEKIYDLMC 534 (787)
Q Consensus 514 i~~~~~~g~~~~A~~~~~~m~ 534 (787)
.-+-+....+...-+.|-++.
T Consensus 1064 ALaaca~raFGtCSKAfmkLe 1084 (1189)
T KOG2041|consen 1064 ALAACAVRAFGTCSKAFMKLE 1084 (1189)
T ss_pred HHHHhhhhhhhhhHHHHHHHH
Confidence 665555555555555555444
No 340
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.24 E-value=1.9e+02 Score=28.56 Aligned_cols=224 Identities=15% Similarity=0.132 Sum_probs=127.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003913 335 LLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCK 414 (787)
Q Consensus 335 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 414 (787)
|.--..+|....++++|..-+.+..+. .+.+...| -....++.|.-+.++|.+- .--+..|+--...|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslf-------hAAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLF-------HAAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHH-------HHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 444456777788888888766655431 11122112 1223455666666666553 1112356777788899
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---C---CCCHHHHHHHHHHHHhcCCHH
Q 003913 415 AEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEK---C---RPNRTIYGIYLESLKNAGNIE 488 (787)
Q Consensus 415 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~---~---~p~~~~~~~li~~~~~~g~~~ 488 (787)
+|.++.|-..+++.-+. ...-++++|+++|.+...- . .--...|..+-.+|++..+++
T Consensus 104 ~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~ 167 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFT 167 (308)
T ss_pred hCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhh
Confidence 99998888777765541 1222344555555554431 1 111234455567788888888
Q ss_pred HHHHHHHHhhhCC-C--CCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccc
Q 003913 489 KAEEIFNHMHSDQ-T--IGVN-TRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVS 564 (787)
Q Consensus 489 ~A~~l~~~m~~~~-~--~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~ 564 (787)
+|-..|.+-.... . --|+ -..|.+.|-.|....++..|.+.++.-.+.+-...++
T Consensus 168 Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~se--------------------- 226 (308)
T KOG1585|consen 168 EAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSE--------------------- 226 (308)
T ss_pred HHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChH---------------------
Confidence 8777665543211 0 0122 2456677777888889999999999866533223333
Q ss_pred cCCchHHHHHHHHHHhhhhhhccchhhcceeEEEEEccCCcccHHHHHHHHHHchh
Q 003913 565 LNLSSEQRENLIGLLLGGLCIESDEKRKRHMIRFQFNENSRMHSVLRRYLYDQYHE 620 (787)
Q Consensus 565 ~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 620 (787)
+..+...||.+|- .|+.+....+. +....-.+-+.|...+.
T Consensus 227 -------d~r~lenLL~ayd-~gD~E~~~kvl-------~sp~~r~MDneya~l~k 267 (308)
T KOG1585|consen 227 -------DSRSLENLLTAYD-EGDIEEIKKVL-------SSPTVRNMDNEYAHLNK 267 (308)
T ss_pred -------HHHHHHHHHHHhc-cCCHHHHHHHH-------cChHhhhhhHHHHHHhh
Confidence 3677777887764 45666665553 22334445566666653
No 341
>PRK09687 putative lyase; Provisional
Probab=58.75 E-value=2.2e+02 Score=29.09 Aligned_cols=195 Identities=12% Similarity=-0.016 Sum_probs=129.0
Q ss_pred CCCHHHHHHHHHHHHhcCCh----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh-----HHHHHHHHHHHHcCCC
Q 003913 329 EEGKEVLLSVLRVCAKEGDV----EDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEF-----MKSLEIFREMQERLGS 399 (787)
Q Consensus 329 ~p~~~t~~~li~~~~~~g~~----~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-----~~A~~~~~~m~~~g~~ 399 (787)
.+|...-...+.++++.|+- .++...+..+.... ++..+-...+.+++..+.. ..+...+......
T Consensus 65 ~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D--~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D--- 139 (280)
T PRK09687 65 SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALED--KSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFD--- 139 (280)
T ss_pred CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcC--CCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhC---
Confidence 34666667777888888873 46777777664443 4555555666666665421 3344444444332
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 003913 400 ASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLG-MHDRLHLAFSECLEKCRPNRTIYGIYL 478 (787)
Q Consensus 400 p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g-~~~~a~~~~~~m~~~~~p~~~~~~~li 478 (787)
++..+-...+.++++.+. .+|...+-.+.+ .+|..+-...+.++.+.+ ....+...+..++. .+|..+-...+
T Consensus 140 ~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~--D~~~~VR~~A~ 213 (280)
T PRK09687 140 KSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ--DKNEEIRIEAI 213 (280)
T ss_pred CCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc--CCChHHHHHHH
Confidence 356666677888888876 466777777665 455666666777777653 23456666666653 56888888899
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHH
Q 003913 479 ESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAW 544 (787)
Q Consensus 479 ~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~ 544 (787)
.++.+.|+ ..|...+-+..+.+ + .....+.++...|.. +|...+..+.+.. +++..
T Consensus 214 ~aLg~~~~-~~av~~Li~~L~~~----~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~--~d~~v 269 (280)
T PRK09687 214 IGLALRKD-KRVLSVLIKELKKG----T--VGDLIIEAAGELGDK-TLLPVLDTLLYKF--DDNEI 269 (280)
T ss_pred HHHHccCC-hhHHHHHHHHHcCC----c--hHHHHHHHHHhcCCH-hHHHHHHHHHhhC--CChhH
Confidence 99999998 56777777777665 3 235678889999985 7999999988632 35543
No 342
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=58.10 E-value=33 Score=24.08 Aligned_cols=32 Identities=13% Similarity=0.184 Sum_probs=24.9
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCccCHHHHHH
Q 003913 516 AYLSSGDFVKAEKIYDLMCLKKYEIESAWMEK 547 (787)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~ 547 (787)
...+.|-..++..++++|.+.|+.++|+.++.
T Consensus 11 ~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~ 42 (48)
T PF11848_consen 11 LAKRRGLISEVKPLLDRLQQAGFRISPKLIEE 42 (48)
T ss_pred HHHHcCChhhHHHHHHHHHHcCcccCHHHHHH
Confidence 34567778888889999999999988886543
No 343
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=58.09 E-value=14 Score=21.81 Aligned_cols=17 Identities=24% Similarity=0.452 Sum_probs=7.1
Q ss_pred HHHHHhcCCHHHHHHHH
Q 003913 478 LESLKNAGNIEKAEEIF 494 (787)
Q Consensus 478 i~~~~~~g~~~~A~~l~ 494 (787)
...+...|++++|..++
T Consensus 8 a~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 8 ARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHcCCHHHHHHHH
Confidence 33444444444444433
No 344
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=57.27 E-value=62 Score=28.05 Aligned_cols=59 Identities=8% Similarity=0.138 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 003913 420 LTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYL 478 (787)
Q Consensus 420 ~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li 478 (787)
+..+-+..+....+.|+....-.-+++|-+.+++..|.++|+.+...+.+.-..|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 33445555666677888888888888888888888888888887766555555555554
No 345
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=57.00 E-value=12 Score=32.60 Aligned_cols=33 Identities=12% Similarity=0.289 Sum_probs=25.9
Q ss_pred HccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 003913 191 GKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAY 225 (787)
Q Consensus 191 ~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~ 225 (787)
-+.|.-.+|-++|.+|.++|-.|| .|+.|+...
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 345777888889999999988877 588887764
No 346
>PHA02875 ankyrin repeat protein; Provisional
Probab=56.53 E-value=53 Score=35.73 Aligned_cols=37 Identities=19% Similarity=0.377 Sum_probs=16.4
Q ss_pred HHHHHHHcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHH
Q 003913 424 LMKEFVETGMKPLMPS--YINLTNMYLNLGMHDRLHLAF 460 (787)
Q Consensus 424 l~~~m~~~g~~p~~~t--~~~li~~~~~~g~~~~a~~~~ 460 (787)
+++.+.+.|..|+... -.+.+...+..|+.+-+..++
T Consensus 117 iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll 155 (413)
T PHA02875 117 IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLI 155 (413)
T ss_pred HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 4444445555544221 122344444556655544444
No 347
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=56.30 E-value=2.4e+02 Score=28.93 Aligned_cols=50 Identities=12% Similarity=0.088 Sum_probs=25.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcC
Q 003913 231 QGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSG 290 (787)
Q Consensus 231 ~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~ 290 (787)
.++..+-++.-....+ +.|...+-..++.-=-. --+.+|+++|.+.++.+
T Consensus 197 ERnp~~RI~~A~~ALe---IN~eCA~AyvLLAEEEa-------~Ti~~AE~l~k~ALka~ 246 (556)
T KOG3807|consen 197 ERNPPARIKAAYQALE---INNECATAYVLLAEEEA-------TTIVDAERLFKQALKAG 246 (556)
T ss_pred hcCcHHHHHHHHHHHh---cCchhhhHHHhhhhhhh-------hhHHHHHHHHHHHHHHH
Confidence 4444444444444443 45555554444432111 25677888888777655
No 348
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=55.96 E-value=3.1e+02 Score=30.13 Aligned_cols=172 Identities=19% Similarity=0.177 Sum_probs=123.1
Q ss_pred hhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChH
Q 003913 305 HSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFM 384 (787)
Q Consensus 305 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 384 (787)
..+..+-.+.-+..+..+|..-| -+...|..++.+|... .-+.-..+|+++.+..+. |++.-..|..-|-+ ++.+
T Consensus 74 ~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~yEk-ik~s 148 (711)
T COG1747 74 TIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKYEK-IKKS 148 (711)
T ss_pred HHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHHHH-hchh
Confidence 56677777788888888888754 4678899999999988 567778899988888764 45544556666665 8999
Q ss_pred HHHHHHHHHHHcCCCC--C---HHHHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003913 385 KSLEIFREMQERLGSA--S---VPAYHKIIELLCKAEETELTESLMKEFVE-TGMKPLMPSYINLTNMYLNLGMHDRLHL 458 (787)
Q Consensus 385 ~A~~~~~~m~~~g~~p--~---~~t~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~li~~~~~~g~~~~a~~ 458 (787)
.+..+|.+...+=++. + ...|.-++..- ..+.+....+...+.. .|..--.+.+--+-.-|....++++|.+
T Consensus 149 k~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~ 226 (711)
T COG1747 149 KAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIR 226 (711)
T ss_pred hHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHH
Confidence 9999999887652210 1 12455555422 3456666777776665 4544446667777788889999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHh
Q 003913 459 AFSECLEKCRPNRTIYGIYLESLKN 483 (787)
Q Consensus 459 ~~~~m~~~~~p~~~~~~~li~~~~~ 483 (787)
++..+++....|+.+-..+|.-+-.
T Consensus 227 Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 227 ILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred HHHHHhhhcchhhhHHHHHHHHHHH
Confidence 9999998767777777777766544
No 349
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=55.62 E-value=3.8e+02 Score=30.97 Aligned_cols=87 Identities=11% Similarity=0.133 Sum_probs=56.1
Q ss_pred CChhHHHHHHHHHHhcCC--CccCHHHHHHHHHHHH--ccCChhHHHHHHHHHHHCCC---------CCCHhHHHHHHHH
Q 003913 158 RENETGFRVYEWMMQQHW--YRFDFALATKLADYMG--KERKFAKCRDIFDDIINQGR---------VPSEMTFHILIVA 224 (787)
Q Consensus 158 ~~~~~A~~~~~~m~~~~~--~~~~~~~~~~li~~~~--~~g~~~~A~~~f~~m~~~g~---------~pd~~ty~~li~~ 224 (787)
+++..|.+.++.+...-. ..+.+.++-.++.+.. +.+..+++.+..+++..... .|-..+|..++..
T Consensus 153 ~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l 232 (608)
T PF10345_consen 153 KDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDL 232 (608)
T ss_pred ccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHH
Confidence 789999998887765431 2444555555554443 55667788888877744322 3467788888887
Q ss_pred HhcCCcCCCHHHHHHHHHHHH
Q 003913 225 YLSAPVQGCLDEACSIYNRMI 245 (787)
Q Consensus 225 ~~~~~~~g~~~~A~~l~~~m~ 245 (787)
++.. ..|+++.+...++++.
T Consensus 233 ~~~l-~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 233 CCSL-QQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHH-HcCCHHHHHHHHHHHH
Confidence 7754 6777777666655543
No 350
>PHA02875 ankyrin repeat protein; Provisional
Probab=54.83 E-value=1.3e+02 Score=32.65 Aligned_cols=206 Identities=13% Similarity=0.046 Sum_probs=100.0
Q ss_pred hhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCChHHH
Q 003913 274 YYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKE--VLLSVLRVCAKEGDVEDA 351 (787)
Q Consensus 274 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~--t~~~li~~~~~~g~~~~A 351 (787)
|+.+. ++.+++.|..|+........-++..+..|+.+ +.+.+.+.|..|+.. ...+.+...+..|+.+.+
T Consensus 13 g~~~i----v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v 84 (413)
T PHA02875 13 GELDI----ARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAV 84 (413)
T ss_pred CCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHH
Confidence 45544 44444567666543322222223444556554 445556677666543 123456667788998877
Q ss_pred HHHHHHHHhCCCCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCChHHHHHHHH
Q 003913 352 EKTWLRLLESDNGIPTP---AFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPA--YHKIIELLCKAEETELTESLMK 426 (787)
Q Consensus 352 ~~~~~~m~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~li~~~~~~g~~~~A~~l~~ 426 (787)
..+++ .|...+.. .-.+.+...+..|+. ++++.+.+.|..|+... -.+.+...+..|+.+-+.
T Consensus 85 ~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~---- 152 (413)
T PHA02875 85 EELLD----LGKFADDVFYKDGMTPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIE---- 152 (413)
T ss_pred HHHHH----cCCcccccccCCCCCHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHH----
Confidence 66654 33211110 011233444556665 45555566777665432 123445555677765544
Q ss_pred HHHHcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 003913 427 EFVETGMKPLMPS--YINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTI---YGIYLESLKNAGNIEKAEEIFNHMHSDQ 501 (787)
Q Consensus 427 ~m~~~g~~p~~~t--~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~~ 501 (787)
.+.+.|..++... -.+.+...+..|..+-+..+++. |..++... ..+++..-+..|+.+-+. -+.+.|
T Consensus 153 ~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~---ga~~n~~~~~~~~t~l~~A~~~~~~~iv~----~Ll~~g 225 (413)
T PHA02875 153 LLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDS---GANIDYFGKNGCVAALCYAIENNKIDIVR----LFIKRG 225 (413)
T ss_pred HHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC---CCCCCcCCCCCCchHHHHHHHcCCHHHHH----HHHHCC
Confidence 4445555443211 12234445556776654444332 44444322 124444445667665443 444555
Q ss_pred CCCCCH
Q 003913 502 TIGVNT 507 (787)
Q Consensus 502 ~~~p~~ 507 (787)
..++.
T Consensus 226 -ad~n~ 230 (413)
T PHA02875 226 -ADCNI 230 (413)
T ss_pred -cCcch
Confidence 44443
No 351
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=54.82 E-value=1.6e+02 Score=26.52 Aligned_cols=50 Identities=18% Similarity=0.145 Sum_probs=27.1
Q ss_pred cCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 003913 345 EGDVEDAEKTWLRLLESDNGI-PTPAFVYKMEAYAKIGEFMKSLEIFREMQER 396 (787)
Q Consensus 345 ~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 396 (787)
.++.+++..+++.|.-..+.. ...++ -.-.+...|++++|..+|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~--dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMF--DGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchh--HHHHHHHcCCHHHHHHHHHhhhcc
Confidence 566666666666665543221 11122 233455666666666666666655
No 352
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=54.41 E-value=25 Score=21.59 Aligned_cols=24 Identities=25% Similarity=0.623 Sum_probs=12.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Q 003913 373 KMEAYAKIGEFMKSLEIFREMQER 396 (787)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~m~~~ 396 (787)
+..+|.+.|+.++|.+.|+++.+.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 344555555555555555555543
No 353
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=54.28 E-value=5e+02 Score=31.92 Aligned_cols=128 Identities=14% Similarity=0.127 Sum_probs=80.4
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH----HHHHHHhcCCHHHH
Q 003913 381 GEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYIN----LTNMYLNLGMHDRL 456 (787)
Q Consensus 381 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~----li~~~~~~g~~~~a 456 (787)
++++.|+.-+.++- ...|.-.++.--++|.+.+|+.++ .|+...+.. ..+-+....++++|
T Consensus 894 ~ry~~AL~hLs~~~-------~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~A 958 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG-------ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEA 958 (1265)
T ss_pred HHHHHHHHHHHHcC-------ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHH
Confidence 45666665555443 112333444445666777776664 455444444 44444456777777
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHH--HHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003913 457 HLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTR--SCNIILSAYLSSGDFVKAEKIYDLMC 534 (787)
Q Consensus 457 ~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~--t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (787)
--.|+..-+ -.-.+.+|..+|++.+|+.+-.+|.... +.. +-..|+.-+...++.-+|-++..+..
T Consensus 959 al~Ye~~Gk--------lekAl~a~~~~~dWr~~l~~a~ql~~~~----de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 959 ALMYERCGK--------LEKALKAYKECGDWREALSLAAQLSEGK----DELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHhcc--------HHHHHHHHHHhccHHHHHHHHHhhcCCH----HHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 777766532 1124677788899999999988876432 332 23678888889999999988888877
Q ss_pred H
Q 003913 535 L 535 (787)
Q Consensus 535 ~ 535 (787)
.
T Consensus 1027 s 1027 (1265)
T KOG1920|consen 1027 S 1027 (1265)
T ss_pred c
Confidence 4
No 354
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=53.70 E-value=1.3e+02 Score=25.04 Aligned_cols=53 Identities=11% Similarity=0.259 Sum_probs=31.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003913 374 MEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETG 432 (787)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g 432 (787)
+..+.+.|++++|..+.+.+ ..||...|-+|-. .+.|..+++..-+.+|..+|
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 34455667777777666554 3567777655533 34555555555555666555
No 355
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=53.43 E-value=2.6e+02 Score=28.39 Aligned_cols=61 Identities=13% Similarity=0.062 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 003913 439 SYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (787)
Q Consensus 439 t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (787)
+++.....|..+|.+.+|.++.+..+.-.+.+...|-.|+..|+..|+--.|.+-++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3455567788999999999999999887788899999999999999997777777776643
No 356
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=52.98 E-value=2.9e+02 Score=28.82 Aligned_cols=120 Identities=8% Similarity=0.035 Sum_probs=85.0
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc---CCHHHHHHHH
Q 003913 418 TELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNA---GNIEKAEEIF 494 (787)
Q Consensus 418 ~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~---g~~~~A~~l~ 494 (787)
.+.-+.++++.++.. +-+......+|..+.+....++..+.|+.++...+-+...|...|+..... -.+++...+|
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 456677888888873 456778888999999999999999999999986667888999888876552 2456666666
Q ss_pred HHhhhC------CC---CCCC-------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC
Q 003913 495 NHMHSD------QT---IGVN-------TRSCNIILSAYLSSGDFVKAEKIYDLMCLKKY 538 (787)
Q Consensus 495 ~~m~~~------~~---~~p~-------~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 538 (787)
.+..+. +. ..+- ...+.-+..-+.++|..+.|..+++.+++-.+
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 554321 10 0011 12333444445689999999999999998776
No 357
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=52.37 E-value=32 Score=27.04 Aligned_cols=48 Identities=10% Similarity=0.103 Sum_probs=27.7
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHH
Q 003913 483 NAGNIEKAEEIFNHMHSDQTIGVN-TRSCNIILSAYLSSGDFVKAEKIY 530 (787)
Q Consensus 483 ~~g~~~~A~~l~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~~A~~~~ 530 (787)
...+.++|+..|....++-.-+|+ -.+...|+.+|+..|++.+++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666677777766665311222 135566666777777766666553
No 358
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=52.33 E-value=24 Score=24.29 Aligned_cols=25 Identities=16% Similarity=0.352 Sum_probs=15.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCC
Q 003913 477 YLESLKNAGNIEKAEEIFNHMHSDQ 501 (787)
Q Consensus 477 li~~~~~~g~~~~A~~l~~~m~~~~ 501 (787)
|..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4456666666666666666666544
No 359
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=51.75 E-value=35 Score=25.52 Aligned_cols=47 Identities=13% Similarity=0.250 Sum_probs=30.2
Q ss_pred CHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 486 NIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 486 ~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
.++++.++++.+... +-|..-.-.+|.||...|++++|.++.+++.+
T Consensus 5 ~~~~~~~~~~~lR~~---RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 5 QLEELEELIDSLRAQ---RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp -HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345555566655543 23556666778888888888888888877764
No 360
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.74 E-value=2.4e+02 Score=27.61 Aligned_cols=12 Identities=8% Similarity=0.202 Sum_probs=8.0
Q ss_pred hHHHHHHHHHHH
Q 003913 275 YLQQAEFIFHNL 286 (787)
Q Consensus 275 ~~~~A~~~~~~m 286 (787)
.+++|.++|.+.
T Consensus 29 k~eeAadl~~~A 40 (288)
T KOG1586|consen 29 KYEEAAELYERA 40 (288)
T ss_pred chHHHHHHHHHH
Confidence 667777776654
No 361
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=48.86 E-value=82 Score=27.81 Aligned_cols=43 Identities=9% Similarity=0.064 Sum_probs=33.0
Q ss_pred hhccccCCcchHHHHHHHhhcCChhHHHHHHHHHHhcCCCccC
Q 003913 137 AQKKWLRQEDGTYLAVHCMRIRENETGFRVYEWMMQQHWYRFD 179 (787)
Q Consensus 137 ~~~~~~~p~~~t~~~~~~~~~~~~~~A~~~~~~m~~~~~~~~~ 179 (787)
..+.|.+-+++++.++.+...|+++.|+.+.+.+++.|...|+
T Consensus 41 ~~g~g~qd~Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l~~P~ 83 (132)
T PF05944_consen 41 ASGSGAQDDVLMTVMVWLFDVGDFDGALDIAEYAIEHGLPMPD 83 (132)
T ss_pred HcCCCCcCchHHhhHhhhhcccCHHHHHHHHHHHHHcCCCccc
Confidence 3455666677777777888899999999999999998854554
No 362
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=48.71 E-value=36 Score=26.75 Aligned_cols=45 Identities=16% Similarity=0.262 Sum_probs=25.4
Q ss_pred hcCCHHHHHHHHHHHHhcC--CCCH-HHHHHHHHHHHhcCCHHHHHHH
Q 003913 449 NLGMHDRLHLAFSECLEKC--RPNR-TIYGIYLESLKNAGNIEKAEEI 493 (787)
Q Consensus 449 ~~g~~~~a~~~~~~m~~~~--~p~~-~~~~~li~~~~~~g~~~~A~~l 493 (787)
...+.++|+..|...++.. .++. .+...|+.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666522 1221 2455666777777776666554
No 363
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=48.18 E-value=79 Score=30.07 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=19.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 003913 467 CRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 467 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (787)
..|+..+|..++..+...|+.++|..+.+++...
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3555566666666666666666666555555553
No 364
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=47.79 E-value=1.1e+02 Score=28.69 Aligned_cols=46 Identities=24% Similarity=0.144 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhhhCCCCCCCH-HHHHHHHHHHHcCCC-----------HHHHHHHHHHHHH
Q 003913 487 IEKAEEIFNHMHSDQTIGVNT-RSCNIILSAYLSSGD-----------FVKAEKIYDLMCL 535 (787)
Q Consensus 487 ~~~A~~l~~~m~~~~~~~p~~-~t~~~li~~~~~~g~-----------~~~A~~~~~~m~~ 535 (787)
+++|+.-|++.+.. .|+. .++..+..+|...+. +++|...|++..+
T Consensus 51 iedAisK~eeAL~I---~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~ 108 (186)
T PF06552_consen 51 IEDAISKFEEALKI---NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD 108 (186)
T ss_dssp HHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc---CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh
Confidence 45666666776664 4654 788888887765543 4555556665554
No 365
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=47.71 E-value=2.1e+02 Score=25.73 Aligned_cols=94 Identities=13% Similarity=0.096 Sum_probs=60.2
Q ss_pred HHhCCCCCCHH--HHHHHHHHHHHcCChHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHH
Q 003913 358 LLESDNGIPTP--AFVYKMEAYAKIGEFMKSLEIFREMQERLG-----SASVPAYHKIIELLCKAEE-TELTESLMKEFV 429 (787)
Q Consensus 358 m~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----~p~~~t~~~li~~~~~~g~-~~~A~~l~~~m~ 429 (787)
|.+.+..++.. ..|+++.-....+...-.+.+++.+..-.. ..+-.+|++++.+..+... ---+..+|..|.
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk 107 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK 107 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 44444444432 356677766777777777777766632100 1244568888888866655 345667788888
Q ss_pred HcCCCCCHHHHHHHHHHHHhcC
Q 003913 430 ETGMKPLMPSYINLTNMYLNLG 451 (787)
Q Consensus 430 ~~g~~p~~~t~~~li~~~~~~g 451 (787)
+.+.+++..-|..+|.++.+..
T Consensus 108 ~~~~~~t~~dy~~li~~~l~g~ 129 (145)
T PF13762_consen 108 KNDIEFTPSDYSCLIKAALRGY 129 (145)
T ss_pred HcCCCCCHHHHHHHHHHHHcCC
Confidence 7777888888888888777653
No 366
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=46.94 E-value=40 Score=23.21 Aligned_cols=21 Identities=24% Similarity=0.509 Sum_probs=9.4
Q ss_pred HHHHHHcCChHHHHHHHHHHH
Q 003913 374 MEAYAKIGEFMKSLEIFREMQ 394 (787)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~m~ 394 (787)
..+|...|+.+.|.+++++..
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHH
Confidence 344444444444444444444
No 367
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=46.47 E-value=5.2e+02 Score=29.88 Aligned_cols=295 Identities=13% Similarity=0.098 Sum_probs=118.2
Q ss_pred CHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC-CCChhhHHHHHHHHHHHHHcCCc
Q 003913 214 SEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPG-GLSKYYLQQAEFIFHNLLTSGLE 292 (787)
Q Consensus 214 d~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~-~~~~g~~~~A~~~~~~m~~~~~~ 292 (787)
+...|-.+ --|. |+|.+++|.++..+... ........|...+..++.... ......-++...-|++..+....
T Consensus 111 ~~p~Wa~I-yy~L---R~G~~~~A~~~~~~~~~--~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~ 184 (613)
T PF04097_consen 111 GDPIWALI-YYCL---RCGDYDEALEVANENRN--QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTD 184 (613)
T ss_dssp TEEHHHHH-HHHH---TTT-HHHHHHHHHHTGG--GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TT
T ss_pred CCccHHHH-HHHH---hcCCHHHHHHHHHHhhh--hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCC
Confidence 44556544 3344 79999999999877665 356666777888888876422 22212233444555555544443
Q ss_pred cCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-----------ChHHHHHHHHHHHhC
Q 003913 293 IQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEG-----------DVEDAEKTWLRLLES 361 (787)
Q Consensus 293 p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g-----------~~~~A~~~~~~m~~~ 361 (787)
.|+.-+...-.+ +.|...+..- ..+..+..-|--+=-.+.+.. -+++-.+...+.-+.
T Consensus 185 ~DpyK~AvY~il-g~cD~~~~~~----------~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~ 253 (613)
T PF04097_consen 185 GDPYKRAVYKIL-GRCDLSRRHL----------PEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGES 253 (613)
T ss_dssp S-HHHHHHHHHH-HT--CCC-S-----------TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-GG
T ss_pred CChHHHHHHHHH-hcCCccccch----------HHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhchh
Confidence 344443333222 2222211100 001111111111100111111 111112222122222
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHH
Q 003913 362 DNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETG-MKPLMPSY 440 (787)
Q Consensus 362 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~ 440 (787)
.+.++ ...-.....+.-+|.++.|++.+-+ ..+...|.+.+...+ ...|-+......-..+.... -.|...-+
T Consensus 254 ~F~~~-~~p~~Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL---~~~gLL~~~~~~~~~lls~~~~~~~~ln~ 327 (613)
T PF04097_consen 254 HFNAG-SNPLLYFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIAL---AYYGLLRVSDSSSAPLLSVDPGDPPPLNF 327 (613)
T ss_dssp GCTT-------HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHH---HHTT------------------------H
T ss_pred hcccc-hhHHHHHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHH---HHcCCCCCCCccccceeeecCCCCCCcCH
Confidence 22221 1111235667778999999998877 222233455444433 33343333322223333211 01122567
Q ss_pred HHHHHHHHhc---CCHHHHHHHHHHHHhcCCCC-HHH-HHHHHHHHHhcCCHHHHHHHHHHhhhCCC-------------
Q 003913 441 INLTNMYLNL---GMHDRLHLAFSECLEKCRPN-RTI-YGIYLESLKNAGNIEKAEEIFNHMHSDQT------------- 502 (787)
Q Consensus 441 ~~li~~~~~~---g~~~~a~~~~~~m~~~~~p~-~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~~~------------- 502 (787)
..||..|++. .+..+|.+.|-.+.....|+ ... ..++-+.....++++. ++..+...|.
T Consensus 328 arLI~~Y~~~F~~td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~---LLG~i~~dG~r~~G~i~~~~~Li 404 (613)
T PF04097_consen 328 ARLIGQYTRSFEITDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDL---LLGDINPDGSRTPGLIERRLSLI 404 (613)
T ss_dssp HHHHHHHHHTTTTT-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHH---HHEEE-TTS-EEE-HHHHTGGGG
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHH---HCCCCCCCCccccceeecccccc
Confidence 8888888874 56778888777765421122 222 3333333333443322 2222211210
Q ss_pred -CC-CCHHHHH---HHHHHHHcCCCHHHHHHHHHHHH
Q 003913 503 -IG-VNTRSCN---IILSAYLSSGDFVKAEKIYDLMC 534 (787)
Q Consensus 503 -~~-p~~~t~~---~li~~~~~~g~~~~A~~~~~~m~ 534 (787)
+. ++..... ....-+...|++++|+.+|+...
T Consensus 405 ~~~~~~~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La~ 441 (613)
T PF04097_consen 405 KFDDDEDFLREIIEQAAREAEERGRFEDAILLYHLAE 441 (613)
T ss_dssp T-SSSSHHHHHHHHHHHHHHHHCT-HHHHHHHHHHTT
T ss_pred CCCCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 11 2222222 23345667899999999988664
No 368
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=46.40 E-value=3.7e+02 Score=28.11 Aligned_cols=64 Identities=19% Similarity=0.230 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003913 332 KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGI---PTPAFVYKMEAYAKIGEFMKSLEIFREMQE 395 (787)
Q Consensus 332 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 395 (787)
..++..+...+.+.|.++.|...+..+...+... ...+...-....-..|+..+|+..+++...
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4456667777777777777777777666543211 223333345556666777777777766665
No 369
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=46.22 E-value=3.4e+02 Score=27.70 Aligned_cols=69 Identities=14% Similarity=0.178 Sum_probs=38.1
Q ss_pred hcCCHHHHHHHHH-HHHhcCCCCHH----HHHHHHHHHHhcCCHHHHHHHH-HHhhhCCCCCCCHHHHHHHHHHHHcCCC
Q 003913 449 NLGMHDRLHLAFS-ECLEKCRPNRT----IYGIYLESLKNAGNIEKAEEIF-NHMHSDQTIGVNTRSCNIILSAYLSSGD 522 (787)
Q Consensus 449 ~~g~~~~a~~~~~-~m~~~~~p~~~----~~~~li~~~~~~g~~~~A~~l~-~~m~~~~~~~p~~~t~~~li~~~~~~g~ 522 (787)
+...+++...... +|.+..-|+.. +|.+++++- .+.+-.++. ++..+ ...+|.-|+.+++..|+
T Consensus 267 ~e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsav----eWnKkeelva~qalr------hlK~yaPLL~af~s~g~ 336 (412)
T KOG2297|consen 267 EEDPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSAV----EWNKKEELVAEQALR------HLKQYAPLLAAFCSQGQ 336 (412)
T ss_pred cCCCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHHH----hhchHHHHHHHHHHH------HHHhhhHHHHHHhcCCh
Confidence 3344555544443 35555556654 566666543 333322222 22222 34578889999999999
Q ss_pred HHHHH
Q 003913 523 FVKAE 527 (787)
Q Consensus 523 ~~~A~ 527 (787)
.+-++
T Consensus 337 sEL~L 341 (412)
T KOG2297|consen 337 SELEL 341 (412)
T ss_pred HHHHH
Confidence 87654
No 370
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=46.05 E-value=1.6e+02 Score=31.84 Aligned_cols=129 Identities=11% Similarity=0.026 Sum_probs=0.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHH
Q 003913 409 IELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIE 488 (787)
Q Consensus 409 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~ 488 (787)
|.--...|++..|.+-+...+..- +-++...-.........|.++.+...+.....-+.....+-.+++...-+.|+++
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~-~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQ-QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhC-CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHH
Q ss_pred HHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHH
Q 003913 489 KAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAW 544 (787)
Q Consensus 489 ~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~ 544 (787)
+|..+-+.|.... + -+......-...--..|-++++...+++... ++|.+
T Consensus 375 ~a~s~a~~~l~~e-i-e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~----~~~~~ 424 (831)
T PRK15180 375 EALSTAEMMLSNE-I-EDEEVLTVAAGSADALQLFDKSYHYWKRVLL----LNPET 424 (831)
T ss_pred HHHHHHHHHhccc-c-CChhheeeecccHHHHhHHHHHHHHHHHHhc----cCChh
No 371
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=45.00 E-value=48 Score=20.07 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHH
Q 003913 453 HDRLHLAFSECLEKCRPNRTIYGIYL 478 (787)
Q Consensus 453 ~~~a~~~~~~m~~~~~p~~~~~~~li 478 (787)
.+.|..+|+.+++.++-+...|...+
T Consensus 3 ~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 3 IERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 34444444444443334444444433
No 372
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=44.50 E-value=1.2e+02 Score=34.24 Aligned_cols=75 Identities=15% Similarity=0.231 Sum_probs=46.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHH------HHHHHHHHHHhcCCCCHHHHHHHH
Q 003913 407 KIIELLCKAEETELTESLMKEFVET--GMKPLMPSYINLTNMYLNLGMHD------RLHLAFSECLEKCRPNRTIYGIYL 478 (787)
Q Consensus 407 ~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~li~~~~~~g~~~------~a~~~~~~m~~~~~p~~~~~~~li 478 (787)
+|+.+|..+|++-.+.++++.+... |-+.-...||..|+...+.|.++ .|.+.++.. ...-|..||..|+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a--~ln~d~~t~all~ 110 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA--RLNGDSLTYALLC 110 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh--hcCCcchHHHHHH
Confidence 6788888888888888888877752 32333556777777777777543 233333332 2455666777666
Q ss_pred HHHHh
Q 003913 479 ESLKN 483 (787)
Q Consensus 479 ~~~~~ 483 (787)
.+-..
T Consensus 111 ~~sln 115 (1117)
T COG5108 111 QASLN 115 (1117)
T ss_pred HhhcC
Confidence 65443
No 373
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=44.29 E-value=2.9e+02 Score=26.24 Aligned_cols=16 Identities=31% Similarity=0.580 Sum_probs=8.8
Q ss_pred cCCHHHHHHHHHHhhh
Q 003913 484 AGNIEKAEEIFNHMHS 499 (787)
Q Consensus 484 ~g~~~~A~~l~~~m~~ 499 (787)
.|+++.|...++-|.+
T Consensus 134 ~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 134 KGSFEEAERFLKFMEK 149 (204)
T ss_pred hccHHHHHHHHHHHHH
Confidence 4555666655555543
No 374
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=44.24 E-value=3e+02 Score=27.01 Aligned_cols=103 Identities=17% Similarity=0.300 Sum_probs=66.2
Q ss_pred HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHC-CC-----------CCCHhHHHH
Q 003913 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQ-GR-----------VPSEMTFHI 220 (787)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-g~-----------~pd~~ty~~ 220 (787)
.+.+..+-+--.++.+-....+ +.-+..-..+++ +...|+...|+.-++.-... |. .|.......
T Consensus 168 Rysklsd~qiL~Rl~~v~k~Ek-v~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ 244 (333)
T KOG0991|consen 168 RYSKLSDQQILKRLLEVAKAEK-VNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKK 244 (333)
T ss_pred hhcccCHHHHHHHHHHHHHHhC-CCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHH
Confidence 3334444444444554444444 443333344443 45689999998888765431 21 467777888
Q ss_pred HHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003913 221 LIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRAL 264 (787)
Q Consensus 221 li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~ 264 (787)
++..|. .+++++|.+++.+..+. |+.|... .+++...+
T Consensus 245 ml~~~~----~~~~~~A~~il~~lw~l-gysp~Di-i~~~FRv~ 282 (333)
T KOG0991|consen 245 MLQACL----KRNIDEALKILAELWKL-GYSPEDI-ITTLFRVV 282 (333)
T ss_pred HHHHHH----hccHHHHHHHHHHHHHc-CCCHHHH-HHHHHHHH
Confidence 999887 79999999999999987 8888654 34455554
No 375
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=44.14 E-value=2.4e+02 Score=28.45 Aligned_cols=49 Identities=20% Similarity=0.233 Sum_probs=21.4
Q ss_pred HHHhcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHh-----cCCHHHHHHHH
Q 003913 446 MYLNLGMHDRLHLAFSECLE-KCRPNRTIYGIYLESLKN-----AGNIEKAEEIF 494 (787)
Q Consensus 446 ~~~~~g~~~~a~~~~~~m~~-~~~p~~~~~~~li~~~~~-----~g~~~~A~~l~ 494 (787)
.|.+.+.+..+.++-..-+. ...-+..-|.+++..|.. .|.+++|+++.
T Consensus 127 LysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 127 LYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 34444444444444433332 111122234444444433 46666666655
No 376
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=43.92 E-value=1.2e+02 Score=24.46 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=15.5
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 003913 380 IGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETE 419 (787)
Q Consensus 380 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 419 (787)
.|+.+.|.+++..+. +| ...|..++.++-..|.-.
T Consensus 49 ~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 49 HGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHE 83 (88)
T ss_pred cCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchh
Confidence 344555555555544 31 123344444444444433
No 377
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=43.82 E-value=2e+02 Score=24.31 Aligned_cols=30 Identities=7% Similarity=-0.046 Sum_probs=12.6
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 003913 505 VNTRSCNIILSAYLSSGDFVKAEKIYDLMCLK 536 (787)
Q Consensus 505 p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (787)
||...|-+|-. .+.|..+++...+.++..+
T Consensus 69 pdL~p~~AL~a--~klGL~~~~e~~l~rla~~ 98 (116)
T PF09477_consen 69 PDLEPWAALCA--WKLGLASALESRLTRLASS 98 (116)
T ss_dssp GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT-
T ss_pred ccHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 44444444332 2444444444444444433
No 378
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=43.55 E-value=2e+02 Score=24.29 Aligned_cols=89 Identities=10% Similarity=0.040 Sum_probs=58.5
Q ss_pred hcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHH
Q 003913 156 RIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLD 235 (787)
Q Consensus 156 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~ 235 (787)
.....++|..+.+|+...+. ....+--.-+..+...|++.+|+ ........||...|-+|-.+ |.|-.+
T Consensus 18 G~HcH~EA~tIa~wL~~~~~--~~E~v~lIr~~sLmNrG~Yq~AL----l~~~~~~~pdL~p~~AL~a~-----klGL~~ 86 (116)
T PF09477_consen 18 GHHCHQEANTIADWLEQEGE--MEEVVALIRLSSLMNRGDYQEAL----LLPQCHCYPDLEPWAALCAW-----KLGLAS 86 (116)
T ss_dssp TTT-HHHHHHHHHHHHHTTT--THHHHHHHHHHHHHHTT-HHHHH----HHHTTS--GGGHHHHHHHHH-----HCT-HH
T ss_pred hhHHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHhhHHHHHHH----HhcccCCCccHHHHHHHHHH-----hhccHH
Confidence 45568999999999999872 33444445556678999999992 22333456899999887655 569999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHH
Q 003913 236 EACSIYNRMIQLGGYQPRPSLH 257 (787)
Q Consensus 236 ~A~~l~~~m~~~~g~~pd~~t~ 257 (787)
++...+.++-.. -.|....|
T Consensus 87 ~~e~~l~rla~~--g~~~~q~F 106 (116)
T PF09477_consen 87 ALESRLTRLASS--GSPELQAF 106 (116)
T ss_dssp HHHHHHHHHCT---SSHHHHHH
T ss_pred HHHHHHHHHHhC--CCHHHHHH
Confidence 999988888654 24444433
No 379
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=42.58 E-value=59 Score=24.55 Aligned_cols=50 Identities=10% Similarity=0.026 Sum_probs=34.9
Q ss_pred ccCCHHHHHHHHHHHhhCCCceEEEecCc-----------EEEEEEeCCchHHHHHhcccc
Q 003913 695 LKVSSEGIALVFKTLKARSLDCRVKKKGR-----------VFWIGFLGSNSTLFWKLIEPY 744 (787)
Q Consensus 695 ~~g~~~e~~~l~~~l~~~gl~~~~~~~~~-----------~~~i~~~~~~~~~~~~lv~~~ 744 (787)
+.+..-++..+...|...||.+.++.... .++|+++.++.++=.++|+.|
T Consensus 5 ~~~~~~ea~~i~~~L~~~gI~~~v~~~~~~~~~g~~g~~~~~~v~V~~~d~~~A~~il~~~ 65 (67)
T PF09413_consen 5 TAGDPIEAELIKGLLEENGIPAFVKNEHMSGYAGEPGTGGQVEVYVPEEDYERAREILEEF 65 (67)
T ss_dssp EE--HHHHHHHHHHHHHTT--EE--S----SS---S--SSSEEEEEEGGGHHHHHHHHHHT
T ss_pred EcCCHHHHHHHHHHHHhCCCcEEEECCccchhhcccCccCceEEEECHHHHHHHHHHHHHh
Confidence 33788899999999999999999863211 278999999999998888754
No 380
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=42.32 E-value=27 Score=30.61 Aligned_cols=34 Identities=18% Similarity=0.331 Sum_probs=23.6
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003913 377 YAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELL 412 (787)
Q Consensus 377 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 412 (787)
.-+.|.-.+|..+|++|++.|-+|| .|+.|+...
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 3344666778888888888888876 366666543
No 381
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=41.44 E-value=6.8e+02 Score=29.77 Aligned_cols=194 Identities=13% Similarity=-0.029 Sum_probs=104.6
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCH-------HHHHHH-HHHHHHcCChHHHHHHHHHHHHc----CCCCCHHHHHHHHH
Q 003913 343 AKEGDVEDAEKTWLRLLESDNGIPT-------PAFVYK-MEAYAKIGEFMKSLEIFREMQER----LGSASVPAYHKIIE 410 (787)
Q Consensus 343 ~~~g~~~~A~~~~~~m~~~~~~~~~-------~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~~li~ 410 (787)
....++++|..+..++...-..|+. ..|+.| .......|++++|.++-+..... -..+.++.+.++..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 4578888888888877664333221 234443 22233467888888887776543 23345666777778
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHH---HHH--HHHHHhcCC--HHHHHHHHHHHHhc---C----CCCHHHHHH
Q 003913 411 LLCKAEETELTESLMKEFVETGMKPLMPSY---INL--TNMYLNLGM--HDRLHLAFSECLEK---C----RPNRTIYGI 476 (787)
Q Consensus 411 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~---~~l--i~~~~~~g~--~~~a~~~~~~m~~~---~----~p~~~~~~~ 476 (787)
+..-.|++++|..+.+...+.--.-+...+ ..+ ...+...|+ ..+....|...... . .+-.-++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 888889999998887776653212222222 222 223455563 33334444444321 1 122345555
Q ss_pred HHHHHHhc-CCHHHHHHHHHHhhhCCCCCCCHHH--HHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 003913 477 YLESLKNA-GNIEKAEEIFNHMHSDQTIGVNTRS--CNIILSAYLSSGDFVKAEKIYDLMCLKK 537 (787)
Q Consensus 477 li~~~~~~-g~~~~A~~l~~~m~~~~~~~p~~~t--~~~li~~~~~~g~~~~A~~~~~~m~~~g 537 (787)
+..++.+. +.-.+|..-+.--.... ..|-... +..|+..+...|+.++|...++++..-.
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~-~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~ 648 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYT-PQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLL 648 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcc-cchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 55555551 12222222222222221 1111122 2256677888999999998888887543
No 382
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.21 E-value=6.4e+02 Score=29.44 Aligned_cols=103 Identities=6% Similarity=0.073 Sum_probs=60.3
Q ss_pred HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCC
Q 003913 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQG 232 (787)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g 232 (787)
.+.+.+.+++|+.+-+.....-.-..-..++-..|+.|.-.|++++|-.+.-.|... +..-|---+.-+. ..+
T Consensus 365 Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~---e~~ 437 (846)
T KOG2066|consen 365 WLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFA---ELD 437 (846)
T ss_pred HHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhc---ccc
Confidence 344667777777766655443210013456777888888889999988888888765 5666666666666 444
Q ss_pred CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 003913 233 CLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVS 266 (787)
Q Consensus 233 ~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~ 266 (787)
+..... .-+... .-..+...|..+|..+..
T Consensus 438 ~l~~Ia---~~lPt~-~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 438 QLTDIA---PYLPTG-PPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ccchhh---ccCCCC-CcccCchHHHHHHHHHHH
Confidence 444332 222221 111234456667766654
No 383
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=40.99 E-value=54 Score=18.99 Aligned_cols=26 Identities=12% Similarity=0.092 Sum_probs=12.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhh
Q 003913 474 YGIYLESLKNAGNIEKAEEIFNHMHS 499 (787)
Q Consensus 474 ~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (787)
|..+...|...|++++|...|++..+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 34444444555555555555544443
No 384
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=39.21 E-value=2.6e+02 Score=30.56 Aligned_cols=27 Identities=15% Similarity=0.049 Sum_probs=18.6
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCccCHH
Q 003913 517 YLSSGDFVKAEKIYDLMCLKKYEIESA 543 (787)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~~g~~~~p~ 543 (787)
|.-.|.-.++-..|++|.++|.---|-
T Consensus 403 wlg~~eR~~~~l~fNe~V~~Gel~aPI 429 (545)
T TIGR01228 403 WLGYGERAKLGLAINEMVRSGELKAPV 429 (545)
T ss_pred hcCccHHHHHHHHHHHHHHcCCccCCE
Confidence 445566667777889999888644554
No 385
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=39.16 E-value=3.7e+02 Score=27.03 Aligned_cols=193 Identities=16% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHhcCChH-HHHHHHHHHHHcCCCC------CHHHHHH
Q 003913 374 MEAYAKIGEFMKSLEIFREMQER----LGSASVPAYHKIIELLCKAEETE-LTESLMKEFVETGMKP------LMPSYIN 442 (787)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~~li~~~~~~g~~~-~A~~l~~~m~~~g~~p------~~~t~~~ 442 (787)
...+.+.|+...|-++-.-|.+. +.+.|......++..+...+.-+ +-..+.+.+++.- ++ +......
T Consensus 17 a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~~~~~~~Gdp~LH~~ 95 (260)
T PF04190_consen 17 ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWS-KFGSYKFGDPELHHL 95 (260)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-HTSS-TT--HHHHHH
T ss_pred HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-ccCCCCCCCHHHHHH
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCC
Q 003913 443 LTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGD 522 (787)
Q Consensus 443 li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~ 522 (787)
+...|.+.|++.+|+.-|-.-. .++...+..++.-....|...++--++-+++=. |.-.|+
T Consensus 96 ~a~~~~~e~~~~~A~~Hfl~~~---~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~----------------yL~l~n 156 (260)
T PF04190_consen 96 LAEKLWKEGNYYEAERHFLLGT---DPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQ----------------YLCLGN 156 (260)
T ss_dssp HHHHHHHTT-HHHHHHHHHTS----HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHH----------------HHHTTB
T ss_pred HHHHHHhhccHHHHHHHHHhcC---ChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHH----------------HHHhcC
Q ss_pred HHHHHHHHHHHHHc-------------CCccCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhhhhccch
Q 003913 523 FVKAEKIYDLMCLK-------------KYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDE 589 (787)
Q Consensus 523 ~~~A~~~~~~m~~~-------------g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~ 589 (787)
...|...++...+. ++.++.. ..-+..++-..+..++.
T Consensus 157 ~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~P-----------------------------llnF~~lLl~t~e~~~~ 207 (260)
T PF04190_consen 157 LRDANELFDTFTSKLIESHPKLENSDIEYPPSYP-----------------------------LLNFLQLLLLTCERDNL 207 (260)
T ss_dssp HHHHHHHHHHHHHHHHHH---EEEEEEEEESS-H-----------------------------HHHHHHHHHHHHHHT-H
T ss_pred HHHHHHHHHHHHHHHhccCcchhccccCCCCCCc-----------------------------hHHHHHHHHHHHhcCcH
Q ss_pred hhcceeEE-----EEEccCCcccHHHHHHHH
Q 003913 590 KRKRHMIR-----FQFNENSRMHSVLRRYLY 615 (787)
Q Consensus 590 ~~a~~~~~-----~~~~p~~~~~~~~l~~~y 615 (787)
+....+.+ +.-+|.-.....-++.+|
T Consensus 208 ~~F~~L~~~Y~~~L~rd~~~~~~L~~IG~~y 238 (260)
T PF04190_consen 208 PLFKKLCEKYKPSLKRDPSFKEYLDKIGQLY 238 (260)
T ss_dssp HHHHHHHHHTHH---HHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccccccHHHHHHHHHHHHHH
No 386
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.31 E-value=7.6 Score=39.64 Aligned_cols=125 Identities=6% Similarity=-0.083 Sum_probs=97.4
Q ss_pred ccchhhcceeEE--EEEccCCcccHHHHHHHHHHchhhcCCCccccCCCCCcceEEeeeccchHHHHHHhhccCcccccc
Q 003913 586 ESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSFKVSDGNDDIPYKYSTISHPYFCFYADKFWPKGRLVIP 663 (787)
Q Consensus 586 ~~~~~~a~~~~~--~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~p~~~~t~~~~~~~~~~~g~~~~a~~~~~ 663 (787)
.|.++.|+..+. ++++|.....|.-.+.++.+++++..|+.-+..+....|+....+......--..|.|.++.+.+.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 456777777776 889999999999999999999999999999999999999887777777777788899999999999
Q ss_pred cchhhcCChhHHHHHhhcCCcccCCCcEEEEccCCHHHHHHHHHHHhhC-CCceEEEec
Q 003913 664 KLIHRWLTPRALAYWFMYGGHRTSVGDILLKLKVSSEGIALVFKTLKAR-SLDCRVKKK 721 (787)
Q Consensus 664 ~mi~~gl~P~~lay~~m~~g~~~~~g~~~~~~~g~~~e~~~l~~~l~~~-gl~~~~~~~ 721 (787)
.-.+.++.+..-++.-=+-- +.+..+|-.+.....+.. -++.++.+.
T Consensus 207 ~a~kld~dE~~~a~lKeV~p-----------~a~ki~e~~~k~er~~~e~~~~~r~er~ 254 (377)
T KOG1308|consen 207 LACKLDYDEANSATLKEVFP-----------NAGKIEEHRRKYERAREEREIKERVERV 254 (377)
T ss_pred HHHhccccHHHHHHHHHhcc-----------chhhhhhchhHHHHHHHHhccccccccc
Confidence 99998888888776543332 224555555566655554 676776654
No 387
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=37.64 E-value=2.2e+02 Score=26.78 Aligned_cols=41 Identities=20% Similarity=0.314 Sum_probs=27.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCC
Q 003913 477 YLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSG 521 (787)
Q Consensus 477 li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g 521 (787)
.+-.|.+.|.+++|.+++++.... |+......-+....+..
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~d----~~~~~~r~kL~~II~~K 157 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFSD----PESQKLRMKLLMIIREK 157 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhcC----CCchhHHHHHHHHHHcc
Confidence 456788889999999999888874 34444444444444443
No 388
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=37.11 E-value=1.9e+02 Score=23.37 Aligned_cols=66 Identities=9% Similarity=0.020 Sum_probs=35.3
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003913 386 SLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLH 457 (787)
Q Consensus 386 A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 457 (787)
+.++++.+.++|+- +..-...+-.+--..|+.+.|.+++..+. .| ...|..++.++...|.-+-|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhhh
Confidence 34555566666533 22222222222224567777777777776 44 235666666666666554443
No 389
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=36.92 E-value=6e+02 Score=27.90 Aligned_cols=108 Identities=14% Similarity=0.107 Sum_probs=70.6
Q ss_pred HHHHHcCChHHHHHHHHHHH---HcCC--CCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHH-------cCCCCC---
Q 003913 375 EAYAKIGEFMKSLEIFREMQ---ERLG--SAS---VPAYHKIIELLCKAEETELTESLMKEFVE-------TGMKPL--- 436 (787)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~m~---~~g~--~p~---~~t~~~li~~~~~~g~~~~A~~l~~~m~~-------~g~~p~--- 436 (787)
..+.-.|++.+|.+++...- ..|. .|. -..||.|.-.+.+.|.+..+..+|.+..+ .|++|.
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 34556788899988876542 2221 111 12357777677777777777777776653 465552
Q ss_pred --------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 003913 437 --------MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKN 483 (787)
Q Consensus 437 --------~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~ 483 (787)
..+||. .-.|...|++-.|.+.|.+....+..++..|-.|..+|..
T Consensus 328 tls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 328 TLSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred ehhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 223333 3457778888888888888877777788888888877754
No 390
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=36.75 E-value=1.1e+02 Score=21.48 Aligned_cols=27 Identities=11% Similarity=0.155 Sum_probs=11.0
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHhHHH
Q 003913 193 ERKFAKCRDIFDDIINQGRVPSEMTFH 219 (787)
Q Consensus 193 ~g~~~~A~~~f~~m~~~g~~pd~~ty~ 219 (787)
.|-+.++..++++|.+.|+.-+...|.
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~ 41 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIE 41 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHH
Confidence 334444444444444444333333333
No 391
>PRK09687 putative lyase; Provisional
Probab=36.63 E-value=4.8e+02 Score=26.60 Aligned_cols=184 Identities=7% Similarity=-0.028 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 003913 314 ERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDV-----EDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLE 388 (787)
Q Consensus 314 ~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~-----~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 388 (787)
.++..++..+... .|+..+-...+.++...+.- ..+...+...... ++..+-...+.++++.|. .+|..
T Consensus 89 ~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D---~~~~VR~~a~~aLg~~~~-~~ai~ 162 (280)
T PRK09687 89 DNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFD---KSTNVRFAVAFALSVIND-EAAIP 162 (280)
T ss_pred HHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhC---CCHHHHHHHHHHHhccCC-HHHHH
Confidence 4566777666332 56777777777777665432 2233333333322 355555667888888876 56777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 003913 389 IFREMQERLGSASVPAYHKIIELLCKAE-ETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKC 467 (787)
Q Consensus 389 ~~~~m~~~g~~p~~~t~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~ 467 (787)
.+-.+.+. +|...-...+.++.+.+ ....+...+..+.. .+|..+-...+.++.+.+.. .|...+-...+.
T Consensus 163 ~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~- 234 (280)
T PRK09687 163 LLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKK- 234 (280)
T ss_pred HHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcC-
Confidence 77777764 45555566666776653 24567777766664 55778888899999999884 555555555542
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHH
Q 003913 468 RPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYL 518 (787)
Q Consensus 468 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~ 518 (787)
++ ..-..+.++...|.- +|...+..+.+.. ||...-...+.++.
T Consensus 235 -~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~---~d~~v~~~a~~a~~ 278 (280)
T PRK09687 235 -GT--VGDLIIEAAGELGDK-TLLPVLDTLLYKF---DDNEIITKAIDKLK 278 (280)
T ss_pred -Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhC---CChhHHHHHHHHHh
Confidence 22 345678899999985 7999999998753 57776666666654
No 392
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=35.53 E-value=4.9e+02 Score=26.41 Aligned_cols=79 Identities=11% Similarity=0.127 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCC---------
Q 003913 455 RLHLAFSECLEKCRPNRTIYGIYLESLKN----AGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSG--------- 521 (787)
Q Consensus 455 ~a~~~~~~m~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g--------- 521 (787)
.|...|..+.... +......|...|.. ..+.++|...|.+..+.| +......+- .+...|
T Consensus 173 ~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g----~~~a~~~~~-~~~~~g~g~~~~~~~ 245 (292)
T COG0790 173 KALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQG----DGAACYNLG-LMYLNGEGVKKAAFL 245 (292)
T ss_pred hHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHH-HHHhcCCCchhhhhc
Confidence 5666666655422 34444444444433 336778888888887777 233333333 444444
Q ss_pred ------CHHHHHHHHHHHHHcCCcc
Q 003913 522 ------DFVKAEKIYDLMCLKKYEI 540 (787)
Q Consensus 522 ------~~~~A~~~~~~m~~~g~~~ 540 (787)
+...|...+......+...
T Consensus 246 ~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 246 TAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred ccccCCCHHHHHHHHHHHHHcCChh
Confidence 7777777777777665433
No 393
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=35.41 E-value=1.3e+02 Score=28.59 Aligned_cols=45 Identities=13% Similarity=-0.079 Sum_probs=37.0
Q ss_pred HHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 488 EKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 488 ~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
+...+..++..+ ..|+..+|..++.++...|+.++|.+..+++..
T Consensus 128 ~~~~~~a~~~l~---~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 128 EAYIEWAERLLR---RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred HHHHHHHHHHHH---hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555 469999999999999999999999999999986
No 394
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=35.35 E-value=94 Score=23.20 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=8.6
Q ss_pred HHHHHHhcCChHHHHHHHHHH
Q 003913 408 IIELLCKAEETELTESLMKEF 428 (787)
Q Consensus 408 li~~~~~~g~~~~A~~l~~~m 428 (787)
+|.+|...|++++|.++++++
T Consensus 29 vI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 344444444444444444433
No 395
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=34.99 E-value=4.1e+02 Score=26.89 Aligned_cols=88 Identities=17% Similarity=0.192 Sum_probs=42.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----
Q 003913 338 VLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLC---- 413 (787)
Q Consensus 338 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~---- 413 (787)
=|.+++..+++.++....-+--+.--+....+...-|-.|.|.|....+.++-......--.-+...|.+++..|.
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 3556666666666654332222211111223333345566677777666666665554311112333555444333
Q ss_pred -hcCChHHHHHHH
Q 003913 414 -KAEETELTESLM 425 (787)
Q Consensus 414 -~~g~~~~A~~l~ 425 (787)
-.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 346666665554
No 396
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=32.90 E-value=2.4e+02 Score=31.49 Aligned_cols=134 Identities=10% Similarity=0.008 Sum_probs=75.6
Q ss_pred CCCHHHHHHHHHHHHhc--CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCHHHHH
Q 003913 399 SASVPAYHKIIELLCKA--EETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE-KCRPNRTIYG 475 (787)
Q Consensus 399 ~p~~~t~~~li~~~~~~--g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-~~~p~~~~~~ 475 (787)
.|+..+..+++.-.... .+.+-|..++..|.. -+.|--...|...-..-..|+...|...+..... .-.-.-+..-
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~-~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v 646 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK-PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLV 646 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC-CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHH
Confidence 45666655555443332 223344455555543 2233222222222222345777777777666553 1111112233
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 476 IYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 476 ~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
.|...+.+.|...+|..++.+..... .....++..+.++|....+++.|++.|+...+
T Consensus 647 ~la~~~~~~~~~~da~~~l~q~l~~~--~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~ 704 (886)
T KOG4507|consen 647 NLANLLIHYGLHLDATKLLLQALAIN--SSEPLTFLSLGNAYLALKNISGALEAFRQALK 704 (886)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHhhc--ccCchHHHhcchhHHHHhhhHHHHHHHHHHHh
Confidence 44555566677778888887777654 34557788888888888888888888888775
No 397
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=32.69 E-value=3.4e+02 Score=23.71 Aligned_cols=44 Identities=25% Similarity=0.255 Sum_probs=28.1
Q ss_pred HHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 003913 489 KAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDL 532 (787)
Q Consensus 489 ~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~ 532 (787)
++.++|+.|..+|.-.--+.-|..-...+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 67777777777663333455666666667777777777777764
No 398
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=32.67 E-value=1.4e+02 Score=32.46 Aligned_cols=23 Identities=17% Similarity=0.079 Sum_probs=11.2
Q ss_pred CChHHHHHHHHHHHhCCCCCCHH
Q 003913 346 GDVEDAEKTWLRLLESDNGIPTP 368 (787)
Q Consensus 346 g~~~~A~~~~~~m~~~~~~~~~~ 368 (787)
|-+..|..+|.++.++|+.||..
T Consensus 230 g~~GNaadv~~~l~~r~i~pDlv 252 (545)
T TIGR01228 230 GLLGNAAEVLPELLKRGVVPDVV 252 (545)
T ss_pred EeeccHHHHHHHHHHcCCCCCCc
Confidence 33444455555555555554443
No 399
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=32.40 E-value=5e+02 Score=25.55 Aligned_cols=116 Identities=16% Similarity=0.133 Sum_probs=67.9
Q ss_pred HHHHHhhccccCCcchHHHHHHHhhcCChhHHHHHHHHHHhcCCCccCHH---HHHHHHHHH-------HccCCh--hHH
Q 003913 132 VRILNAQKKWLRQEDGTYLAVHCMRIRENETGFRVYEWMMQQHWYRFDFA---LATKLADYM-------GKERKF--AKC 199 (787)
Q Consensus 132 ~~~l~~~~~~~~p~~~t~~~~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~---~~~~li~~~-------~~~g~~--~~A 199 (787)
.+-....+.+..-+++++.++.+...|+++.|+++.+.+++.|...|+.+ +-+.+++-. .+.|.. ..-
T Consensus 71 V~g~L~~g~~~qd~Vl~~~mvW~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~ 150 (230)
T PHA02537 71 VEGVLAAGAGYQDDVLMTVMVWRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYF 150 (230)
T ss_pred HHHHHHcCCCCCCCeeeEeeeeeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHH
Confidence 33333446677778888888888899999999999999999986555532 112222211 233432 123
Q ss_pred HHHHHHHHHCCCCCCHhH---HHHHHHHHhcC------CcCCCHHHHHHHHHHHHHh
Q 003913 200 RDIFDDIINQGRVPSEMT---FHILIVAYLSA------PVQGCLDEACSIYNRMIQL 247 (787)
Q Consensus 200 ~~~f~~m~~~g~~pd~~t---y~~li~~~~~~------~~~g~~~~A~~l~~~m~~~ 247 (787)
...|..+...---||.+. |-.+-..+.+. ...++...|+.++++..+.
T Consensus 151 ~~~~~~l~~~~dmpd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l 207 (230)
T PHA02537 151 LRVFLDLTTEWDMPDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQL 207 (230)
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHh
Confidence 455666654433355433 33333333210 0345677888888888764
No 400
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=32.27 E-value=1.3e+02 Score=25.51 Aligned_cols=32 Identities=13% Similarity=0.139 Sum_probs=20.8
Q ss_pred ccCCcchHHHHHHHhhcCChhHHHHHHHHHHhcCCC
Q 003913 141 WLRQEDGTYLAVHCMRIRENETGFRVYEWMMQQHWY 176 (787)
Q Consensus 141 ~~~p~~~t~~~~~~~~~~~~~~A~~~~~~m~~~~~~ 176 (787)
|..|++.-| +.++...++|++|.++|.++|.+
T Consensus 62 Gy~PtViD~----lrRC~T~EEALEVInylek~GEI 93 (128)
T PF09868_consen 62 GYNPTVIDY----LRRCKTDEEALEVINYLEKRGEI 93 (128)
T ss_pred CCCChHHHH----HHHhCcHHHHHHHHHHHHHhCCC
Confidence 455554433 45566777888888888888744
No 401
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=31.17 E-value=1.1e+02 Score=31.28 Aligned_cols=37 Identities=19% Similarity=0.183 Sum_probs=28.9
Q ss_pred CCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 003913 328 FEEGKEV-LLSVLRVCAKEGDVEDAEKTWLRLLESDNG 364 (787)
Q Consensus 328 ~~p~~~t-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 364 (787)
+.||..+ |+..|....+.||+++|.+++++.++.|..
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 4566665 468888888888888888888888888865
No 402
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=30.52 E-value=1.8e+02 Score=25.41 Aligned_cols=43 Identities=21% Similarity=0.404 Sum_probs=26.5
Q ss_pred HHHHHHHHHhhhCCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHH
Q 003913 488 EKAEEIFNHMHSDQTIGVN-TRSCNIILSAYLSSGDFVKAEKIYD 531 (787)
Q Consensus 488 ~~A~~l~~~m~~~~~~~p~-~~t~~~li~~~~~~g~~~~A~~~~~ 531 (787)
+++.++|..|.++| |.-. +.-|.....-+-..|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~-IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKG-IGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCC-cchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34566777777766 4333 3445555556667777777777765
No 403
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=30.37 E-value=1.1e+02 Score=25.99 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=14.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhh
Q 003913 474 YGIYLESLKNAGNIEKAEEIFNHMHS 499 (787)
Q Consensus 474 ~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (787)
|..|+..|...|..++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 45555555555555555555555544
No 404
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=30.01 E-value=7.9e+02 Score=27.17 Aligned_cols=290 Identities=12% Similarity=0.102 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcC---CcCCCHHHH
Q 003913 161 ETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSA---PVQGCLDEA 237 (787)
Q Consensus 161 ~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~---~~~g~~~~A 237 (787)
+.|.+.++-..+. +...+...-..+--..+.+....||++-.+. .|....|+..|..|... .+...+...
T Consensus 268 ~laqr~l~i~~~t-----dl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~ 340 (568)
T KOG2396|consen 268 DLAQRELEILSQT-----DLQHTDNQAKAVEVGSKESRCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHT 340 (568)
T ss_pred HHHHHHHHHHHHh-----hccchhhhhhchhcchhHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHH
Q 003913 238 CSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERIS 317 (787)
Q Consensus 238 ~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~ 317 (787)
+.+|+......+..++...--+.+..+.. ...+|..+-..+...++.-+...+-.-+......+..---...
T Consensus 341 ~~~~~~~~~~~~l~~~~~~~ys~~~l~~~--------t~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~ 412 (568)
T KOG2396|consen 341 MCVFRKAHELKLLSECLYKQYSVLLLCLN--------TLNEAREVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFE 412 (568)
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHh--------ccchHhHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHH
Q ss_pred HHHHHHHHcCCCCCHHHHHHHH-HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 003913 318 LLKKEMQQAGFEEGKEVLLSVL-RVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQER 396 (787)
Q Consensus 318 ~l~~~m~~~g~~p~~~t~~~li-~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 396 (787)
.+|......-..+-...|++.. ..+......+.....+..+.... -...-+.+++-+-+.|-..+|..+|..+...
T Consensus 413 ~l~n~~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~~~~~---~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l 489 (568)
T KOG2396|consen 413 ELFNHLRKQVCSELLISWASASEGDSLQEDTLDLIISALLSVIGAD---SVTLKSKYLDWAYESGGYKKARKVYKSLQEL 489 (568)
T ss_pred HHHHHHHHHhcchhHHHHHHHhhccchhHHHHHHHHHHHHHhcCCc---eeehhHHHHHHHHHhcchHHHHHHHHHHHhC
Q ss_pred CCCCCHHHHHHHH---HHHHhcCChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q 003913 397 LGSASVPAYHKII---ELLCKAEETELTESLMKEFVE-TGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRT 472 (787)
Q Consensus 397 g~~p~~~t~~~li---~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~ 472 (787)
.+|....|.-+| ......| +..+..+++.|.. -| .|+..|...+.-=...|..+.+-.++....+...|...
T Consensus 490 -pp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~~~~ 565 (568)
T KOG2396|consen 490 -PPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFG--ADSDLWMDYMKEELPLGRPENCGQIYWRAMKTLQGESA 565 (568)
T ss_pred -CCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhC--CChHHHHHHHHhhccCCCcccccHHHHHHHHhhChhhh
No 405
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=29.96 E-value=3.8e+02 Score=26.47 Aligned_cols=83 Identities=14% Similarity=0.008 Sum_probs=44.1
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHH-HHHHHHHHHHcCCCHH
Q 003913 447 YLNLGMHDRLHLAFSECLEKCRPNR-TIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTR-SCNIILSAYLSSGDFV 524 (787)
Q Consensus 447 ~~~~g~~~~a~~~~~~m~~~~~p~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~-t~~~li~~~~~~g~~~ 524 (787)
|....+++.|...|.+.+. ..|++ .-|+.=+..+.+..+++.+..-..+.++. -||.+ ....+..++.....++
T Consensus 20 ~f~~k~y~~ai~~y~raI~-~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql---~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC-INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL---DPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHh-cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc---ChHHHHHHHHHHHHHHhhcccc
Confidence 3334455555554444433 23443 33455556666666666666666665553 24433 3334444555666666
Q ss_pred HHHHHHHHH
Q 003913 525 KAEKIYDLM 533 (787)
Q Consensus 525 ~A~~~~~~m 533 (787)
+|+..+.+.
T Consensus 96 eaI~~Lqra 104 (284)
T KOG4642|consen 96 EAIKVLQRA 104 (284)
T ss_pred HHHHHHHHH
Confidence 666666665
No 406
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=29.86 E-value=3.3e+02 Score=30.44 Aligned_cols=151 Identities=10% Similarity=-0.006 Sum_probs=88.9
Q ss_pred CCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003913 365 IPTPAFVYKMEAYAKIG--EFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYIN 442 (787)
Q Consensus 365 ~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 442 (787)
|+..+.-+++.-....- .-+-|-.+|..|... ..|--++.|-..-..--.|+...|...+.......-.-.-+....
T Consensus 569 ~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~~-~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~ 647 (886)
T KOG4507|consen 569 PDDHARKILLSRINNYTIPEEEIGSFLFHAINKP-NAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVN 647 (886)
T ss_pred chHHHHHHHHHHHhcccCcHHHHHHHHHHHhcCC-CCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHH
Confidence 44444444433333221 223355566555442 233333333222223345778888777766654221112234555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHH
Q 003913 443 LTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYL 518 (787)
Q Consensus 443 li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~ 518 (787)
|.+...+.|.+.+|..++.+.+.-.-..+.++-.+..+|.-..+++.|++.|++..+.. +.+.+.-+.|...-|
T Consensus 648 la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~--~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 648 LANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLT--TKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC--CCChhhHHHHHHHHH
Confidence 66677777788888888888776335556777888888888889999999998888774 455666666654433
No 407
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=29.26 E-value=2.3e+02 Score=28.92 Aligned_cols=43 Identities=7% Similarity=0.013 Sum_probs=21.9
Q ss_pred HHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHH
Q 003913 281 FIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQ 325 (787)
Q Consensus 281 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~ 325 (787)
++++.|.+.++.|.-..+.|+. ..+.+.-.+.+++.+|+.+..
T Consensus 264 EL~~~L~~~~i~PqfyaFRWit--LLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWIT--LLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHH--HHHhccCCchhHHHHHHHHhc
Confidence 4455555555555555555554 334444445555555555544
No 408
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=29.11 E-value=5.1e+02 Score=24.64 Aligned_cols=18 Identities=33% Similarity=0.532 Sum_probs=14.1
Q ss_pred HcCCCHHHHHHHHHHHHH
Q 003913 518 LSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 518 ~~~g~~~~A~~~~~~m~~ 535 (787)
.+.|+++.|.++++-|..
T Consensus 132 l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 132 LRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 467888888888888864
No 409
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=28.97 E-value=4.8e+02 Score=26.69 Aligned_cols=52 Identities=13% Similarity=0.279 Sum_probs=26.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003913 338 VLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQE 395 (787)
Q Consensus 338 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 395 (787)
++....+.+++....+.+..+.. ...-...+..+...|++..|+++..+..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33444444444444444444432 22333445666666666666666665543
No 410
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=28.31 E-value=4e+02 Score=29.75 Aligned_cols=21 Identities=10% Similarity=0.359 Sum_probs=12.7
Q ss_pred HHHHHHHcCChHHHHHHHHHH
Q 003913 373 KMEAYAKIGEFMKSLEIFREM 393 (787)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~m 393 (787)
++.-|.+.+++++|..++..|
T Consensus 414 L~~~yl~~~qi~eAi~lL~sm 434 (545)
T PF11768_consen 414 LISQYLRCDQIEEAINLLLSM 434 (545)
T ss_pred HHHHHHhcCCHHHHHHHHHhC
Confidence 455666666666666666555
No 411
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=28.24 E-value=1.7e+02 Score=25.63 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHCCCCCCHhHH-HHHHHHHhcCCcCCCHHHHHHHHH
Q 003913 198 KCRDIFDDIINQGRVPSEMTF-HILIVAYLSAPVQGCLDEACSIYN 242 (787)
Q Consensus 198 ~A~~~f~~m~~~g~~pd~~ty-~~li~~~~~~~~~g~~~~A~~l~~ 242 (787)
++.++|..|..+|+--....| ...-.-+- ..|++.+|.++|+
T Consensus 81 dp~~if~~L~~~~IG~~~AlfYe~~A~~lE---~~g~~~~A~~iy~ 123 (125)
T smart00777 81 EPRELFQFLYSKGIGTKLALFYEEWAQLLE---AAGRYKKADEVYQ 123 (125)
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHH---HcCCHHHHHHHHH
Confidence 345555555555543333222 22222222 4555555555554
No 412
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=28.00 E-value=7.9e+02 Score=26.51 Aligned_cols=88 Identities=9% Similarity=0.124 Sum_probs=57.9
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH--------HHhcCCHHHHHHHHHHhhhCC
Q 003913 430 ETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLES--------LKNAGNIEKAEEIFNHMHSDQ 501 (787)
Q Consensus 430 ~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~--------~~~~g~~~~A~~l~~~m~~~~ 501 (787)
...+.||.++.|-+...++..-..+-...+|+...++-.|=.+-+-+||-. -.+...-++|+++++.|...=
T Consensus 176 tkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqaDPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L 255 (669)
T KOG3636|consen 176 TKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQADPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQL 255 (669)
T ss_pred ccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhc
Confidence 356788888888888888888888888888888777555555544444321 123445688999998887653
Q ss_pred CCCCCHHHHHHHHHHHH
Q 003913 502 TIGVNTRSCNIILSAYL 518 (787)
Q Consensus 502 ~~~p~~~t~~~li~~~~ 518 (787)
.+ -|+.-+-.|..-|+
T Consensus 256 ~~-eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 256 SV-EDVPDFFSLAQYYS 271 (669)
T ss_pred cc-ccchhHHHHHHHHh
Confidence 12 24455555555554
No 413
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=27.66 E-value=72 Score=22.98 Aligned_cols=29 Identities=21% Similarity=0.249 Sum_probs=21.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHH
Q 003913 512 IILSAYLSSGDFVKAEKIYDLMCLKKYEIESAW 544 (787)
Q Consensus 512 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~ 544 (787)
.+.-|+.+.|++++|.+..+.+++ ++|+.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~----~eP~N 34 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLE----IEPDN 34 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH----HTTS-
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh----hCCCc
Confidence 455678889999999999999887 66653
No 414
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=27.50 E-value=7.3e+02 Score=25.92 Aligned_cols=73 Identities=18% Similarity=0.211 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHHHHc---CCCCCHHHHH--HHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCHHH-HHHHHHHHHH-
Q 003913 312 DKERISLLKKEMQQA---GFEEGKEVLL--SVLRVCAKEGDVEDAEKTWLRLLE-----SDNGIPTPA-FVYKMEAYAK- 379 (787)
Q Consensus 312 ~~~~a~~l~~~m~~~---g~~p~~~t~~--~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~-~~~li~~~~~- 379 (787)
|.++|++.++++.+. --.|+.+.|. .+.+.+...|++.++++++++..+ .++.+++.+ |..+-.-|.+
T Consensus 90 D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqYyk~ 169 (380)
T KOG2908|consen 90 DKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQYYKK 169 (380)
T ss_pred cHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHHHHHH
Confidence 444555555444332 2244555443 344455566777777777666665 455443332 4444444443
Q ss_pred cCChH
Q 003913 380 IGEFM 384 (787)
Q Consensus 380 ~g~~~ 384 (787)
.|++.
T Consensus 170 ~~d~a 174 (380)
T KOG2908|consen 170 IGDFA 174 (380)
T ss_pred HHhHH
Confidence 24443
No 415
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=27.42 E-value=47 Score=24.96 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=17.2
Q ss_pred CHHHHHHHHHHhhhCCCCCCCH
Q 003913 486 NIEKAEEIFNHMHSDQTIGVNT 507 (787)
Q Consensus 486 ~~~~A~~l~~~m~~~~~~~p~~ 507 (787)
+++.|...|.++...|.++|+.
T Consensus 40 d~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 40 DYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred CHHHHHHHHHHHHhcCCCChhh
Confidence 7888888888888777677764
No 416
>PRK10941 hypothetical protein; Provisional
Probab=27.32 E-value=4.8e+02 Score=26.42 Aligned_cols=59 Identities=14% Similarity=0.121 Sum_probs=28.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 003913 408 IIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKC 467 (787)
Q Consensus 408 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~ 467 (787)
+-.+|.+.++++.|+.+.+.+.... +.+..-+.--.-.|.+.|.+..|..-++..++.+
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 4445555555555555555555422 1123333333344555555555555555554433
No 417
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=26.62 E-value=1.2e+02 Score=30.88 Aligned_cols=41 Identities=17% Similarity=0.260 Sum_probs=26.9
Q ss_pred CCHHH-HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 003913 365 IPTPA-FVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAY 405 (787)
Q Consensus 365 ~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 405 (787)
||..+ |+..|..-.+.|++++|+.+++|.++.|..--..+|
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 44443 457777777778888888888777777765333333
No 418
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=26.37 E-value=4e+02 Score=23.38 Aligned_cols=59 Identities=12% Similarity=0.112 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003913 198 KCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLF 261 (787)
Q Consensus 198 ~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll 261 (787)
+..+.++.+....+.|+...-...+.++- |-+++.-|+.+|+-++.+ +.+....|..++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~R---RvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACR---RVNDFATAVRILEAIKDK--CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHH---HhccHHHHHHHHHHHHHh--cccHHHHHHHHH
Confidence 45566677777788888888888888887 788888888888888764 333333444444
No 419
>PRK10941 hypothetical protein; Provisional
Probab=26.24 E-value=6.9e+02 Score=25.26 Aligned_cols=60 Identities=7% Similarity=-0.220 Sum_probs=39.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 003913 441 INLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 441 ~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (787)
+.|-.+|.+.++++.|.++.+.++.-.+.+..-+---.-.|.+.|.+..|..=++...++
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 455566677777777777777776644555555655566677777777777666666554
No 420
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=26.20 E-value=1.1e+03 Score=27.35 Aligned_cols=186 Identities=11% Similarity=0.051 Sum_probs=93.1
Q ss_pred HHHHHHHHHhcCCCcc--CHHHHHHHHHHHH-ccCChhHHHHHHHHHHHCCCCCCHh-----HHHHHHHHHhcCCcCCCH
Q 003913 163 GFRVYEWMMQQHWYRF--DFALATKLADYMG-KERKFAKCRDIFDDIINQGRVPSEM-----TFHILIVAYLSAPVQGCL 234 (787)
Q Consensus 163 A~~~~~~m~~~~~~~~--~~~~~~~li~~~~-~~g~~~~A~~~f~~m~~~g~~pd~~-----ty~~li~~~~~~~~~g~~ 234 (787)
|.+-++-+.+...++| +..++-.+...|. ...+++.|+..+++-....-.++.. .-..++..+. +.+..
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~---~~~~~ 116 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYF---KTNPK 116 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH---hcCHH
Confidence 4445555553332333 2344445555555 5667888888877654432222221 2234445554 33333
Q ss_pred HHHHHHHHHHHHhC-C--CCCCHHHHHHH-HHHHHcCCCCCChhhHHHHHHHHHHHHHcC---CccCHHHHHHHHHHhhh
Q 003913 235 DEACSIYNRMIQLG-G--YQPRPSLHNSL-FRALVSKPGGLSKYYLQQAEFIFHNLLTSG---LEIQKDIYSGLIWLHSY 307 (787)
Q Consensus 235 ~~A~~l~~~m~~~~-g--~~pd~~t~~~l-l~~~~~~~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~li~~~~~ 307 (787)
. |....++.++.- + ..+=...|..+ +..+... ++...|.+.++.+.... ..|-..++..++.....
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~------~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~ 189 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQH------KDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLH 189 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHH
Confidence 3 777777766531 1 11122233333 1111111 26777777777665433 22333444444444444
Q ss_pred ccCCCHHHHHHHHHHHHHcCC---------CCCHHHHHHHHHHHH--hcCChHHHHHHHHHH
Q 003913 308 QDNIDKERISLLKKEMQQAGF---------EEGKEVLLSVLRVCA--KEGDVEDAEKTWLRL 358 (787)
Q Consensus 308 ~~~g~~~~a~~l~~~m~~~g~---------~p~~~t~~~li~~~~--~~g~~~~A~~~~~~m 358 (787)
...+..+++.+..+++..... .|-..+|..++..++ ..|+++.+...++++
T Consensus 190 l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 190 LRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred hcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 556666667777766633222 335667777777666 456655665554443
No 421
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=26.17 E-value=2.2e+02 Score=30.60 Aligned_cols=63 Identities=19% Similarity=0.222 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhC--C-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003913 332 KEVLLSVLRVCAKEGDVEDAEKTWLRLLES--D-----NGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQ 394 (787)
Q Consensus 332 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~--~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 394 (787)
-++...|++..|-.|++..|.++++.+.-. + ..-.+.+|-.+.-+|...+++.+|.+.|....
T Consensus 122 YFSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 122 YFSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355678889999999999999998765321 1 11234456667888999999999999998765
No 422
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=25.89 E-value=3.5e+02 Score=22.89 Aligned_cols=27 Identities=19% Similarity=0.418 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003913 369 AFVYKMEAYAKIGEFMKSLEIFREMQE 395 (787)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 395 (787)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 366777777777777777777777665
No 423
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=25.85 E-value=8.5e+02 Score=26.16 Aligned_cols=44 Identities=14% Similarity=0.233 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhh
Q 003913 508 RSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSL 554 (787)
Q Consensus 508 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l 554 (787)
..+..|..-| .+++...+++++++.. .+-+++-.-.+....+.+
T Consensus 307 qlr~il~~fy--~sky~~cl~~L~~~k~-~llLD~yLaphVd~Ly~~ 350 (466)
T KOG0686|consen 307 QLREILFKFY--SSKYASCLELLREIKP-RLLLDMYLAPHVDNLYSL 350 (466)
T ss_pred HHHHHHHHHh--hhhHHHHHHHHHHhcc-ceeechhcchhHHHHHHH
Confidence 3444444433 3467777777777763 444555443444444433
No 424
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=25.79 E-value=7.4e+02 Score=26.49 Aligned_cols=22 Identities=9% Similarity=0.064 Sum_probs=10.6
Q ss_pred HHHcCChHHHHHHHHHHHHcCC
Q 003913 377 YAKIGEFMKSLEIFREMQERLG 398 (787)
Q Consensus 377 ~~~~g~~~~A~~~~~~m~~~g~ 398 (787)
+.+.+++..|.++|+++..+..
T Consensus 140 l~n~~dy~aA~~~~~~L~~r~l 161 (380)
T TIGR02710 140 AINAFDYLFAHARLETLLRRLL 161 (380)
T ss_pred HHHhcChHHHHHHHHHHHhccc
Confidence 3344455555555555554433
No 425
>PRK05414 urocanate hydratase; Provisional
Probab=25.77 E-value=5.6e+02 Score=28.33 Aligned_cols=27 Identities=11% Similarity=0.112 Sum_probs=18.7
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCccCHH
Q 003913 517 YLSSGDFVKAEKIYDLMCLKKYEIESA 543 (787)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~~g~~~~p~ 543 (787)
|.-.|.-.++-..|++|.++|.---|-
T Consensus 412 w~g~~~R~~~~l~fNe~V~~Gel~aPi 438 (556)
T PRK05414 412 WLGYGERARLGLAFNEMVRNGELKAPI 438 (556)
T ss_pred ecCccHHHHHHHHHHHHHHcCCccCCE
Confidence 445566667777889999888654554
No 426
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=25.48 E-value=89 Score=23.66 Aligned_cols=50 Identities=12% Similarity=0.173 Sum_probs=38.4
Q ss_pred CccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHh
Q 003913 176 YRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYL 226 (787)
Q Consensus 176 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~ 226 (787)
+.|....++-++..+++..-+++++..+++..+.|.- +..+|---++.++
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I-~~d~~lK~vR~La 53 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSI-DLDTFLKQVRSLA 53 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 3456677888888999988899999999999888863 6777777777776
No 427
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=25.43 E-value=7.5e+02 Score=25.41 Aligned_cols=81 Identities=9% Similarity=0.021 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003913 418 TELTESLMKEFVETGM----KPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEI 493 (787)
Q Consensus 418 ~~~A~~l~~~m~~~g~----~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l 493 (787)
.++|.+.|+.....+. ..+......++....+.|..+.-..+++... ..++..-...++.+++...+.+...++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~--~~~~~~~k~~~l~aLa~~~d~~~~~~~ 223 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYK--NSTSPEEKRRLLSALACSPDPELLKRL 223 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHH--TTSTHHHHHHHHHHHTT-S-HHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHh--ccCCHHHHHHHHHhhhccCCHHHHHHH
Confidence 3456666666665321 2344445555555555555444444443333 234566666777777777776666666
Q ss_pred HHHhhhC
Q 003913 494 FNHMHSD 500 (787)
Q Consensus 494 ~~~m~~~ 500 (787)
++.....
T Consensus 224 l~~~l~~ 230 (324)
T PF11838_consen 224 LDLLLSN 230 (324)
T ss_dssp HHHHHCT
T ss_pred HHHHcCC
Confidence 6666664
No 428
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=25.42 E-value=3.5e+02 Score=21.98 Aligned_cols=20 Identities=20% Similarity=0.220 Sum_probs=10.4
Q ss_pred HHHHhcCCHHHHHHHHHHhh
Q 003913 479 ESLKNAGNIEKAEEIFNHMH 498 (787)
Q Consensus 479 ~~~~~~g~~~~A~~l~~~m~ 498 (787)
......|+.++|...+++.+
T Consensus 49 ~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 49 ELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHhCCHHHHHHHHHHHH
Confidence 33444555555555555544
No 429
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=25.23 E-value=5.3e+02 Score=27.15 Aligned_cols=20 Identities=15% Similarity=0.368 Sum_probs=12.0
Q ss_pred HHhhcCChhHHHHHHHHHHh
Q 003913 153 HCMRIRENETGFRVYEWMMQ 172 (787)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~ 172 (787)
.|...++++.|+-+++..+-
T Consensus 192 iciglk~fe~Al~~~e~~v~ 211 (422)
T KOG2582|consen 192 ICIGLKRFERALYLLEICVT 211 (422)
T ss_pred eeeccccHHHHHHHHHHHHh
Confidence 45556666666666666553
No 430
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=25.20 E-value=4.3e+02 Score=28.35 Aligned_cols=124 Identities=15% Similarity=0.087 Sum_probs=0.0
Q ss_pred CChhhHHHHHHHHHHHHHcCCccCHH--HHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcC
Q 003913 271 LSKYYLQQAEFIFHNLLTSGLEIQKD--IYSGLIWLHSYQDNIDKERISLLKKEMQQAGFE--EGKEVLLSVLRVCAKEG 346 (787)
Q Consensus 271 ~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~--p~~~t~~~li~~~~~~g 346 (787)
+..+++..|.++|+.+... +.++.. .+..+..++.+-...+..+|.+.++.....-.. -....+..++...-...
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 220 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKELVEVLKALE 220 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHH
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003913 347 DVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQE 395 (787)
Q Consensus 347 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 395 (787)
.+......-..-.+.-..+-+...-....=-...|+++.|...+-++.+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lE 269 (379)
T PF09670_consen 221 SILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALE 269 (379)
T ss_pred hhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
No 431
>PRK09857 putative transposase; Provisional
Probab=24.35 E-value=7.1e+02 Score=25.53 Aligned_cols=20 Identities=25% Similarity=0.192 Sum_probs=9.7
Q ss_pred HcCCCHHHHHHHHHHHHHcC
Q 003913 518 LSSGDFVKAEKIYDLMCLKK 537 (787)
Q Consensus 518 ~~~g~~~~A~~~~~~m~~~g 537 (787)
.+.|.-++++++..+|+..|
T Consensus 251 ~qeG~qe~~~~ia~~ml~~g 270 (292)
T PRK09857 251 RQEGEQSKALHIAKIMLESG 270 (292)
T ss_pred HHHHHHHHHHHHHHHHHHcC
Confidence 33333344555555555554
No 432
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=24.02 E-value=3.9e+02 Score=24.01 Aligned_cols=43 Identities=21% Similarity=0.251 Sum_probs=18.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003913 408 IIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNL 450 (787)
Q Consensus 408 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~ 450 (787)
++..+...+..-.|.++++++.+.+...+..|.-.-++.+...
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~ 68 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEA 68 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHC
Confidence 4444444444444555555555444333333333333333333
No 433
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.96 E-value=1.1e+02 Score=23.97 Aligned_cols=29 Identities=24% Similarity=0.284 Sum_probs=21.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCC
Q 003913 477 YLESLKNAGNIEKAEEIFNHMHSDQTIGV 505 (787)
Q Consensus 477 li~~~~~~g~~~~A~~l~~~m~~~~~~~p 505 (787)
+++-+.++.-.++|+++++-|.++|.+.|
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrGEi~~ 65 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRGEITP 65 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhCCCCH
Confidence 46667778888888888888888875543
No 434
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=23.66 E-value=4e+02 Score=21.63 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=12.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 003913 443 LTNMYLNLGMHDRLHLAFSECLE 465 (787)
Q Consensus 443 li~~~~~~g~~~~a~~~~~~m~~ 465 (787)
+.......|++++|...+++.++
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 33444555666666666666553
No 435
>PHA03100 ankyrin repeat protein; Provisional
Probab=23.63 E-value=1e+03 Score=26.23 Aligned_cols=143 Identities=10% Similarity=0.119 Sum_probs=62.2
Q ss_pred hhhccCCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHH-----HHhcCChHHHHHHHHHHHhCCCCCCH---HHHHHHH
Q 003913 305 HSYQDNIDKERISLLKKEMQQAGFEEGKEV--LLSVLRV-----CAKEGDVEDAEKTWLRLLESDNGIPT---PAFVYKM 374 (787)
Q Consensus 305 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t--~~~li~~-----~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~li 374 (787)
+..+..|+.+ +++.+.+.|..|+... ..+.+.. .+..|..+-+. .+.+.|..++. ...+.|.
T Consensus 40 ~~A~~~~~~~----ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~----~Ll~~ga~i~~~d~~g~tpL~ 111 (480)
T PHA03100 40 YLAKEARNID----VVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVK----LLLEYGANVNAPDNNGITPLL 111 (480)
T ss_pred hhhhccCCHH----HHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHH----HHHHCCCCCCCCCCCCCchhh
Confidence 4455555544 3444455676665432 1233444 44555544433 33445543321 1122232
Q ss_pred HHHH-HcCChHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHh
Q 003913 375 EAYA-KIGEFMKSLEIFREMQERLGSASVPA--YHKIIELLCKAEETELTESLMKEFVETGMKPLMPS--YINLTNMYLN 449 (787)
Q Consensus 375 ~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~li~~~~~ 449 (787)
.+.. ..|+.+ +++.+.+.|..++... -.+.+...+..|. .-.++.+.+.+.|..++... -.+.+...+.
T Consensus 112 ~A~~~~~~~~~----iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~ 185 (480)
T PHA03100 112 YAISKKSNSYS----IVEYLLDNGANVNIKNSDGENLLHLYLESNK--IDLKILKLLIDKGVDINAKNRYGYTPLHIAVE 185 (480)
T ss_pred HHHhcccChHH----HHHHHHHcCCCCCccCCCCCcHHHHHHHcCC--ChHHHHHHHHHCCCCcccccCCCCCHHHHHHH
Confidence 2221 444443 3444445555443321 1233444455551 11234455556666554322 1234555556
Q ss_pred cCCHHHHHHHHH
Q 003913 450 LGMHDRLHLAFS 461 (787)
Q Consensus 450 ~g~~~~a~~~~~ 461 (787)
.|+.+-+..+++
T Consensus 186 ~~~~~iv~~Ll~ 197 (480)
T PHA03100 186 KGNIDVIKFLLD 197 (480)
T ss_pred hCCHHHHHHHHH
Confidence 666555544443
No 436
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.63 E-value=1.1e+02 Score=24.01 Aligned_cols=26 Identities=12% Similarity=0.308 Sum_probs=22.7
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHCC
Q 003913 185 KLADYMGKERKFAKCRDIFDDIINQG 210 (787)
Q Consensus 185 ~li~~~~~~g~~~~A~~~f~~m~~~g 210 (787)
++++.+.+|.-.++|+++++.|.++|
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 45777889999999999999999987
No 437
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=23.51 E-value=4e+02 Score=21.60 Aligned_cols=57 Identities=12% Similarity=0.054 Sum_probs=31.4
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCC
Q 003913 466 KCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGD 522 (787)
Q Consensus 466 ~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~ 522 (787)
..+.|...--.+...+...|++++|++.+-++.+...-.-+...-..|+..+...|.
T Consensus 17 ~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 17 ANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 345566777777777888888888888877777654111123333444444444333
No 438
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=23.34 E-value=5.2e+02 Score=23.06 Aligned_cols=82 Identities=6% Similarity=0.011 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 003913 457 HLAFSECLEKCRPNRTIYGIYLESLKNAG---NIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLM 533 (787)
Q Consensus 457 ~~~~~~m~~~~~p~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m 533 (787)
+++..+...+ .+...+--.+..++.+.. ++.+.+.+|++..+...-.-......-|.-++.+.+++++++++.+.+
T Consensus 19 e~~~rq~a~~-~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~l 97 (149)
T KOG3364|consen 19 EEILRQAARS-DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDAL 97 (149)
T ss_pred HHHHHHHHhc-cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHH
Q ss_pred HHcCCccCHH
Q 003913 534 CLKKYEIESA 543 (787)
Q Consensus 534 ~~~g~~~~p~ 543 (787)
++ .+|+
T Consensus 98 l~----~e~~ 103 (149)
T KOG3364|consen 98 LE----TEPN 103 (149)
T ss_pred Hh----hCCC
No 439
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=23.34 E-value=1.6e+02 Score=22.38 Aligned_cols=50 Identities=8% Similarity=0.036 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHc
Q 003913 468 RPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS 519 (787)
Q Consensus 468 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~ 519 (787)
.|....++-|+..+++-.-+++++..+.++...|.+ +..+|.--++.+++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I--~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSI--DLDTFLKQVRSLAR 54 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS---HHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHH
Confidence 345566777777777777777777777777777743 56666666666655
No 440
>PF01514 YscJ_FliF: Secretory protein of YscJ/FliF family; InterPro: IPR006182 This domain is found in proteins that are related to the YscJ lipoprotein, where it covers most of the sequence, and the flagellar M-ring protein FliF, where it covers the N-terminal region. The members of the YscJ family are thought to be involved in secretion of several proteins. The FliF protein ring is thought to be part of the export apparatus for flagellar proteins, based on the similarity to YscJ proteins [].; PDB: 1YJ7_A 2Y9J_d.
Probab=23.26 E-value=1.4e+02 Score=28.75 Aligned_cols=47 Identities=11% Similarity=0.126 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHHhhCCCceEEEecCcEEEEEEeCCchHHHHHhcccc
Q 003913 698 SSEGIALVFKTLKARSLDCRVKKKGRVFWIGFLGSNSTLFWKLIEPY 744 (787)
Q Consensus 698 ~~~e~~~l~~~l~~~gl~~~~~~~~~~~~i~~~~~~~~~~~~lv~~~ 744 (787)
+.+|+-.++..|...||..++...|..++|+++.++....+-++...
T Consensus 36 ~~~da~~i~~~L~~~gI~y~~~~~g~~~~I~Vp~~~~~~ar~~La~~ 82 (206)
T PF01514_consen 36 DEEDANEIVAALDENGIPYKLSDDGGTWTILVPEDQVARARMLLASQ 82 (206)
T ss_dssp -HHHHHHHHHHHHHTT--EEEEE-TTSEEEEEEGGGHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCCCCcEecCCCCeeEEEeCHHHHHHHHHHHHHc
Confidence 88999999999999999999998887789999999999988777543
No 441
>PHA03100 ankyrin repeat protein; Provisional
Probab=23.26 E-value=2.9e+02 Score=30.62 Aligned_cols=135 Identities=10% Similarity=0.075 Sum_probs=66.0
Q ss_pred HHHHHHHHHcCCCCCHHHH--HHHHHHHH--hcCChHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHHcCChHHHHHHH
Q 003913 317 SLLKKEMQQAGFEEGKEVL--LSVLRVCA--KEGDVEDAEKTWLRLLESDNGIPTPA--FVYKMEAYAKIGEFMKSLEIF 390 (787)
Q Consensus 317 ~~l~~~m~~~g~~p~~~t~--~~li~~~~--~~g~~~~A~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~ 390 (787)
.++.+.+.+.|..++...- .+.+...+ ..|+.+-+.. +.+.|..++... -.+.+...+..|. .-.++.
T Consensus 86 ~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~----Ll~~g~~~~~~~~~g~t~L~~A~~~~~--~~~~iv 159 (480)
T PHA03100 86 KEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEY----LLDNGANVNIKNSDGENLLHLYLESNK--IDLKIL 159 (480)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHH----HHHcCCCCCccCCCCCcHHHHHHHcCC--ChHHHH
Confidence 3445556667766543221 23333444 6676655444 445565443221 1234555666662 123345
Q ss_pred HHHHHcCCCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH--------HHHHHHHHHHhcCC--HHHHHH
Q 003913 391 REMQERLGSASVPAY--HKIIELLCKAEETELTESLMKEFVETGMKPLMP--------SYINLTNMYLNLGM--HDRLHL 458 (787)
Q Consensus 391 ~~m~~~g~~p~~~t~--~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--------t~~~li~~~~~~g~--~~~a~~ 458 (787)
+.+.+.|..++.... .+.+...+..|..+ +.+.+.+.|..++.. .+.+.+...+..|. .+-+..
T Consensus 160 ~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~----iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~ 235 (480)
T PHA03100 160 KLLIDKGVDINAKNRYGYTPLHIAVEKGNID----VIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNY 235 (480)
T ss_pred HHHHHCCCCcccccCCCCCHHHHHHHhCCHH----HHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHH
Confidence 555666766554321 23445556666554 445555666655422 11444455556666 544444
Q ss_pred HHH
Q 003913 459 AFS 461 (787)
Q Consensus 459 ~~~ 461 (787)
+++
T Consensus 236 Ll~ 238 (480)
T PHA03100 236 LLS 238 (480)
T ss_pred HHH
Confidence 443
No 442
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=23.03 E-value=5e+02 Score=30.06 Aligned_cols=136 Identities=11% Similarity=0.074 Sum_probs=0.0
Q ss_pred HHHHcCChHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 003913 376 AYAKIGEFMKSLEIFREMQ-ERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHD 454 (787)
Q Consensus 376 ~~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 454 (787)
++..-|+.++|..+.++|. .+..-.-..-.-++..+|+-.|+.....+++.-.+..+ ..|+.-+..+.-++.-..+++
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~-nDDVrRaAVialGFVl~~dp~ 588 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDV-NDDVRRAAVIALGFVLFRDPE 588 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhccccccc-chHHHHHHHHHheeeEecChh
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhhCCCCCCCHHHHHHHHH
Q 003913 455 RLHLAFSECLEKCRPNRTIYGIYLESLKNAG-NIEKAEEIFNHMHSDQTIGVNTRSCNIILS 515 (787)
Q Consensus 455 ~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~~~~~p~~~t~~~li~ 515 (787)
....+..-+.+...|.+..-.++.-+.+-+| -..+|..+++-|... +.|.+--.+||.
T Consensus 589 ~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~D---~~~fVRQgAlIa 647 (929)
T KOG2062|consen 589 QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAINLLEPLTSD---PVDFVRQGALIA 647 (929)
T ss_pred hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhcC---hHHHHHHHHHHH
No 443
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=22.85 E-value=7.5e+02 Score=24.50 Aligned_cols=83 Identities=11% Similarity=0.042 Sum_probs=35.0
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHH
Q 003913 377 YAKIGEFMKSLEIFREMQERLGSASVPA-YHKIIELLCKAEETELTESLMKEFVETGMKPLMP-SYINLTNMYLNLGMHD 454 (787)
Q Consensus 377 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~li~~~~~~g~~~ 454 (787)
|....+++.|..-|-+.+. +.|+..+ |+.=+..+.+..+++.+.+=-++.++ +.||.+ ....+..+......++
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcccc
Confidence 3334455555554444333 2344432 33334444444555544444333333 334432 2222333333444455
Q ss_pred HHHHHHHHH
Q 003913 455 RLHLAFSEC 463 (787)
Q Consensus 455 ~a~~~~~~m 463 (787)
+|+..+.+.
T Consensus 96 eaI~~Lqra 104 (284)
T KOG4642|consen 96 EAIKVLQRA 104 (284)
T ss_pred HHHHHHHHH
Confidence 555544444
No 444
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=22.83 E-value=8.7e+02 Score=25.23 Aligned_cols=134 Identities=16% Similarity=0.173 Sum_probs=71.6
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH----cCCCCCH
Q 003913 328 FEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLES-DNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQE----RLGSASV 402 (787)
Q Consensus 328 ~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~ 402 (787)
+..|..-+++|..+ +..++++-.+..+...+. |-.--...+-....-||+-|+-+.|++.+++-.+ .|.+.|+
T Consensus 66 i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDV 143 (393)
T KOG0687|consen 66 IKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDV 143 (393)
T ss_pred eeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhh
Confidence 44455555555543 223333333333333332 1111123455667788999999998888876543 4677777
Q ss_pred HHHHHHHH-HHHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003913 403 PAYHKIIE-LLCKAEETELTESLMKEFVETGMKPLM----PSYINLTNMYLNLGMHDRLHLAFSECLE 465 (787)
Q Consensus 403 ~t~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~a~~~~~~m~~ 465 (787)
+.+..-+. .|....-+.+-.+..+.+.+.|...+. .+|-.+- |....++.+|-.+|-....
T Consensus 144 vf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 144 VFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 76544333 233333445556666666676755542 2333321 2233567777777766654
No 445
>PRK14136 recX recombination regulator RecX; Provisional
Probab=22.69 E-value=8.5e+02 Score=25.06 Aligned_cols=84 Identities=14% Similarity=0.148 Sum_probs=52.7
Q ss_pred CCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCC
Q 003913 250 YQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFE 329 (787)
Q Consensus 250 ~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~ 329 (787)
..|-...++..|..|+.. ..--.++.+.|.+.|+. .+.+..++..+.+.|+.
T Consensus 158 ~~~~~~lk~kAL~lLSrR--------eRSe~ELr~KL~kkG~~--------------------ee~IE~VIerLke~gYL 209 (309)
T PRK14136 158 SRPARSLKGRALGYLSRR--------EYSRAELARKLAPYADE--------------------SDSVEPLLDALEREGWL 209 (309)
T ss_pred cccHHHHHHHHHHHhhcc--------cccHHHHHHHHHHcCCC--------------------HHHHHHHHHHHHHcCCc
Confidence 457777888888887764 33344566666666654 34556777778888877
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 003913 330 EGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNG 364 (787)
Q Consensus 330 p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 364 (787)
-|..-...++... .+.+ .-.+|-.++.++|+.
T Consensus 210 DDeRFAesyVr~R--~~kk-Gp~rIrqELrQKGId 241 (309)
T PRK14136 210 SDARFAESLVHRR--ASRV-GSARIVSELKRHAVG 241 (309)
T ss_pred CHHHHHHHHHHHH--hhch-hHHHHHHHHHHcCCC
Confidence 6655555555442 2332 335566778888875
No 446
>PF09090 MIF4G_like_2: MIF4G like; InterPro: IPR015174 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 2", and is found in nuclear cap-binding proteins and eIF4G. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA.; GO: 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A.
Probab=22.67 E-value=5.9e+02 Score=25.42 Aligned_cols=17 Identities=12% Similarity=0.032 Sum_probs=7.4
Q ss_pred CCHHHHHHHHHHhhhCC
Q 003913 485 GNIEKAEEIFNHMHSDQ 501 (787)
Q Consensus 485 g~~~~A~~l~~~m~~~~ 501 (787)
.+...+.-+.++|...+
T Consensus 106 ~~~q~~~li~dkll~~~ 122 (253)
T PF09090_consen 106 NNPQMGFLIIDKLLNYG 122 (253)
T ss_dssp T-HHHHHHHHHHHHHTT
T ss_pred cCCceehHHHHHHHhcC
Confidence 34444444444444444
No 447
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=22.20 E-value=6.9e+02 Score=28.54 Aligned_cols=30 Identities=10% Similarity=0.174 Sum_probs=16.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003913 401 SVPAYHKIIELLCKAEETELTESLMKEFVE 430 (787)
Q Consensus 401 ~~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 430 (787)
+...-.-++..|.+.|..+.|.++.+.+-.
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~ 433 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQ 433 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333445556666666666666666555443
No 448
>PRK09857 putative transposase; Provisional
Probab=22.01 E-value=7.1e+02 Score=25.53 Aligned_cols=66 Identities=17% Similarity=0.098 Sum_probs=34.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 003913 335 LLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSAS 401 (787)
Q Consensus 335 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 401 (787)
+..++.-..+.++.++..++++.+.+... ......-++..-+.+.|..+++.++-.+|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~~~-~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAERSP-KHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHhCc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 33444444456666666666666655421 1222233445555555555556666666666655443
No 449
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=21.77 E-value=5.2e+02 Score=23.21 Aligned_cols=47 Identities=17% Similarity=0.229 Sum_probs=22.8
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH
Q 003913 357 RLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPA 404 (787)
Q Consensus 357 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 404 (787)
.+.+.|++++. --..++..+.+.+..-.|.++++++.+.+...+..|
T Consensus 11 ~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaT 57 (145)
T COG0735 11 RLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLAT 57 (145)
T ss_pred HHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhH
Confidence 34444544332 222345555555555556666666655544444444
No 450
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=21.71 E-value=2.1e+03 Score=29.31 Aligned_cols=261 Identities=11% Similarity=0.039 Sum_probs=126.9
Q ss_pred HHHHHHccCChhHHHHHHHHHHHCCCCCC-HhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003913 186 LADYMGKERKFAKCRDIFDDIINQGRVPS-EMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRAL 264 (787)
Q Consensus 186 li~~~~~~g~~~~A~~~f~~m~~~g~~pd-~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~ 264 (787)
.|-.....|++..|..-|+.+.+.+ |+ ...++-++.... ..|.+..++...+-.... ..+....++++=--.
T Consensus 1455 qil~~e~~g~~~da~~Cye~~~q~~--p~~~~~~~g~l~sml---~~~~l~t~i~~~dg~~~~--~se~~~~~~s~~~ea 1527 (2382)
T KOG0890|consen 1455 QILEHEASGNWADAAACYERLIQKD--PDKEKHHSGVLKSML---AIQHLSTEILHLDGLIIN--RSEEVDELNSLGVEA 1527 (2382)
T ss_pred HHHHHHhhccHHHHHHHHHHhhcCC--CccccchhhHHHhhh---cccchhHHHhhhcchhhc--cCHHHHHHHHHHHHH
Confidence 3445677899999999999999875 44 556765555444 478888888866666542 334444443322111
Q ss_pred HcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCC--------C-HHHH
Q 003913 265 VSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEE--------G-KEVL 335 (787)
Q Consensus 265 ~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p--------~-~~t~ 335 (787)
+-.. ++++..+..+. ..+...+..-....+ ....+..|.-...+..+.+++.-+.| + ...|
T Consensus 1528 aW~l-----~qwD~~e~~l~---~~n~e~w~~~~~g~~--ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y 1597 (2382)
T KOG0890|consen 1528 AWRL-----SQWDLLESYLS---DRNIEYWSVESIGKL--LLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSY 1597 (2382)
T ss_pred Hhhh-----cchhhhhhhhh---cccccchhHHHHHHH--HHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHH
Confidence 1111 35555555444 222222221111111 11122222222223333333221111 0 1123
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHH-HHHcCCCCC-----HHHH
Q 003913 336 LSVLRVCAKEGDVEDAEKTWLRLLES----DNGIPTPAFVYKMEAYAKIGEFMKSLEIFRE-MQERLGSAS-----VPAY 405 (787)
Q Consensus 336 ~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~g~~p~-----~~t~ 405 (787)
..++....-. +-....+..... ...-+..-|..-+..-....+..+-+--+++ |......|+ ..+|
T Consensus 1598 ~~~~kLH~l~----el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~w 1673 (2382)
T KOG0890|consen 1598 EILMKLHLLL----ELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECW 1673 (2382)
T ss_pred HHHHHHHHHH----HHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHH
Confidence 3333222111 111111111111 0111222232222222222223332222222 222212222 3468
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 003913 406 HKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPN 470 (787)
Q Consensus 406 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~ 470 (787)
-...+..-++|+++.|...+-...+.+ . ...+.-...-.-+.|+...|..++++..+.+.|+
T Consensus 1674 LqsAriaR~aG~~q~A~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~ 1735 (2382)
T KOG0890|consen 1674 LQSARIARLAGHLQRAQNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSKNFPD 1735 (2382)
T ss_pred HHHHHHHHhcccHHHHHHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhccc
Confidence 788888888999999988777777655 3 3456666777888999999999999988654444
No 451
>PF07023 DUF1315: Protein of unknown function (DUF1315); InterPro: IPR009749 This family consists of several bacterial proteins of around 90 residues in length. The function of this family is unknown.
Probab=21.37 E-value=3.1e+02 Score=22.47 Aligned_cols=50 Identities=18% Similarity=0.205 Sum_probs=37.4
Q ss_pred HHHHHcCCccCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhhhhcc
Q 003913 531 DLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIES 587 (787)
Q Consensus 531 ~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~ 587 (787)
++|+.. ++|++|+.+..++.+++ .+-...+..++...+..+++.--.++.
T Consensus 2 ~~li~~---mtPevY~rL~~AVElGK----WpDG~~LT~eQre~~mQaVm~yq~~~n 51 (93)
T PF07023_consen 2 EQLIDS---MTPEVYERLKQAVELGK----WPDGRALTPEQRESCMQAVMLYQARHN 51 (93)
T ss_pred hHHHHh---CCHHHHHHHHHHHHhCc----CCCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 455553 89999999999999876 444566888888888888776665554
No 452
>PRK00117 recX recombination regulator RecX; Reviewed
Probab=21.32 E-value=6.2e+02 Score=22.93 Aligned_cols=49 Identities=14% Similarity=0.168 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 003913 314 ERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNG 364 (787)
Q Consensus 314 ~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 364 (787)
+.+..++..+.+.|..-|..-....+..... .-..-.++-.++.+.|+.
T Consensus 43 ~~i~~vl~~l~~~~~ldD~~~a~~~~~~~~~--~~~g~~~I~~~L~~kGi~ 91 (157)
T PRK00117 43 EVIEAVLDRLKEEGLLDDERFAESFVRSRAR--KGYGPRRIRQELRQKGVD 91 (157)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh--CCchHHHHHHHHHHcCCC
Confidence 3444555566666655454333344444422 222344566667777764
No 453
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=21.09 E-value=6.8e+02 Score=25.60 Aligned_cols=113 Identities=13% Similarity=0.115 Sum_probs=65.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003913 372 YKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLG 451 (787)
Q Consensus 372 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g 451 (787)
.++..+.+..++.+..+.+..+. ....-...+..+...|++..|++++.+..+. +. ...-|+++=+.-.
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~-l~-~l~~~~c~~~L~~--- 171 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQL-LE-ELKGYSCVRHLSS--- 171 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HH-hcccchHHHHHhH---
Confidence 35666777777777777777665 3344556788888999999999999887762 00 0011111111111
Q ss_pred CHHHHHHHHHHHHh------cCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003913 452 MHDRLHLAFSECLE------KCRPNRTIYGIYLESLKNAGNIEKAEEIFN 495 (787)
Q Consensus 452 ~~~~a~~~~~~m~~------~~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 495 (787)
++++-......+++ -..-|+..|..++.+|.-.|+...+.+-+.
T Consensus 172 ~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~ 221 (291)
T PF10475_consen 172 QLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQ 221 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 12222222222221 124577788888888888887666554333
No 454
>PRK11619 lytic murein transglycosylase; Provisional
Probab=20.95 E-value=1.3e+03 Score=26.72 Aligned_cols=117 Identities=8% Similarity=0.037 Sum_probs=76.1
Q ss_pred CChHHHHHHHHHHHHc-CCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003913 416 EETELTESLMKEFVET-GMKPLM--PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEE 492 (787)
Q Consensus 416 g~~~~A~~l~~~m~~~-g~~p~~--~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 492 (787)
.+.+.|..++...... ++.+.. .+...+.......+...+|...++...... .+......-+..-.+.++++.+..
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~-~~~~~~e~r~r~Al~~~dw~~~~~ 333 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS-QSTSLLERRVRMALGTGDRRGLNT 333 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc-CCcHHHHHHHHHHHHccCHHHHHH
Confidence 4568888999887553 333332 233444333333333566777776654311 244444555556568999999999
Q ss_pred HHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 493 IFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 493 l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
.+..|.... .-...-..-+.+++...|+.++|..+|+....
T Consensus 334 ~i~~L~~~~--~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 334 WLARLPMEA--KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHhcCHhh--ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999997753 33455566677888889999999999999853
No 455
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=20.91 E-value=1.3e+03 Score=26.38 Aligned_cols=43 Identities=7% Similarity=0.125 Sum_probs=20.6
Q ss_pred hHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 003913 216 MTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSK 267 (787)
Q Consensus 216 ~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~ 267 (787)
..++.|+..+ |.=+.+.-.++++++.. .+ ...+..+++++...
T Consensus 311 ~~f~~lv~~l----R~~~~e~l~~l~~~~~~----~~-~~~r~~~~Dal~~~ 353 (574)
T smart00638 311 AKFLRLVRLL----RTLSEEQLEQLWRQLYE----KK-KKARRIFLDAVAQA 353 (574)
T ss_pred HHHHHHHHHH----HhCCHHHHHHHHHHHHh----CC-HHHHHHHHHHHHhc
Confidence 3455555555 24445555555555532 11 34455555555543
No 456
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.90 E-value=6.1e+02 Score=30.44 Aligned_cols=115 Identities=16% Similarity=0.172 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCh--HHHHHHHHHHHHcCCCCCHHHHH--
Q 003913 369 AFVYKMEAYAKIGEFMKSLEIFREMQERLGSAS---VPAYHKIIELLCKAEET--ELTESLMKEFVETGMKPLMPSYI-- 441 (787)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~li~~~~~~g~~--~~A~~l~~~m~~~g~~p~~~t~~-- 441 (787)
-|..|+..|...|+.++|++++.+..+.--.-| ...+--++.-+-+.+.. +-++++-+...+..-.-....++
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 467788888888888888888888876310001 11122244444444433 33333333333211000000111
Q ss_pred ----------HHHHHHHhcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHh
Q 003913 442 ----------NLTNMYLNLGMHDRLHLAFSECLE-KCRPNRTIYGIYLESLKN 483 (787)
Q Consensus 442 ----------~li~~~~~~g~~~~a~~~~~~m~~-~~~p~~~~~~~li~~~~~ 483 (787)
..+-.|......+-+...++.+.. .-.++..-.+.++..|++
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 123345556666667777777665 444566666777776664
No 457
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=20.74 E-value=8.4e+02 Score=24.25 Aligned_cols=92 Identities=10% Similarity=0.009 Sum_probs=0.0
Q ss_pred HHhcCCHHHHHHHHHHHHhc------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHH
Q 003913 447 YLNLGMHDRLHLAFSECLEK------------------CRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTR 508 (787)
Q Consensus 447 ~~~~g~~~~a~~~~~~m~~~------------------~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~ 508 (787)
+.+.|++.+|...|.+.+.- .+.....+-.+-..+...|++-++++-..+..... +-|+.
T Consensus 188 lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~--~~nvK 265 (329)
T KOG0545|consen 188 LFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHH--PGNVK 265 (329)
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcC--CchHH
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHH
Q 003913 509 SCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAW 544 (787)
Q Consensus 509 t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~ 544 (787)
.|-.=..|.+..=+.++|.+=|...++ .+|..
T Consensus 266 A~frRakAhaa~Wn~~eA~~D~~~vL~----ldpsl 297 (329)
T KOG0545|consen 266 AYFRRAKAHAAVWNEAEAKADLQKVLE----LDPSL 297 (329)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHh----cChhh
No 458
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=20.68 E-value=9.3e+02 Score=24.72 Aligned_cols=79 Identities=14% Similarity=0.168 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003913 349 EDAEKTWLRLLESDN----GIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESL 424 (787)
Q Consensus 349 ~~A~~~~~~m~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l 424 (787)
..|.+.|+.....+. ..+...-..+.....+.|..+.-..+++..... ++......++.+++...+.+...++
T Consensus 147 ~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~~ 223 (324)
T PF11838_consen 147 AEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKRL 223 (324)
T ss_dssp HHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHHH
T ss_pred HHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHHH
Confidence 445555555544311 223333333444444444433333333322221 2344444555555555555555555
Q ss_pred HHHHHH
Q 003913 425 MKEFVE 430 (787)
Q Consensus 425 ~~~m~~ 430 (787)
++....
T Consensus 224 l~~~l~ 229 (324)
T PF11838_consen 224 LDLLLS 229 (324)
T ss_dssp HHHHHC
T ss_pred HHHHcC
Confidence 555554
No 459
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=20.12 E-value=1.3e+03 Score=26.15 Aligned_cols=385 Identities=11% Similarity=0.078 Sum_probs=204.6
Q ss_pred hhccCCCcchhhHHHHHHhhccccCCcchHHHHH---HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHH-ccC
Q 003913 119 LCKELPSHKGGTLVRILNAQKKWLRQEDGTYLAV---HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMG-KER 194 (787)
Q Consensus 119 ~~~~~~~~~~~~~~~~l~~~~~~~~p~~~t~~~~---~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~-~~g 194 (787)
++...+.+....+....... ..--|-.+.|-.- .=.+.|..+.+..+|++-+.. ++.++..|......++ ..|
T Consensus 52 i~~~~~~~~~~~~r~~y~~f-L~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a--ip~SvdlW~~Y~~f~~n~~~ 128 (577)
T KOG1258|consen 52 IQENDSIEDVDALREVYDIF-LSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA--IPLSVDLWLSYLAFLKNNNG 128 (577)
T ss_pred HhccCchhHHHHHHHHHHHH-HhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHhccCC
Confidence 44444444443333333321 1234666655554 345788999999999999985 6777877777666554 467
Q ss_pred ChhHHHHHHHHHHHC-CC-CCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCC--
Q 003913 195 KFAKCRDIFDDIINQ-GR-VPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGG-- 270 (787)
Q Consensus 195 ~~~~A~~~f~~m~~~-g~-~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~-- 270 (787)
+.+...+.|+..... |. .....-|-..|.--. .++++.....+|++.++- |. ..|+.....+.+....
T Consensus 129 d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en---~qks~k~v~~iyeRilei----P~-~~~~~~f~~f~~~l~~~~ 200 (577)
T KOG1258|consen 129 DPETLRDLFERAKSYVGLDFLSDPLWDKYIEFEN---GQKSWKRVANIYERILEI----PL-HQLNRHFDRFKQLLNQNE 200 (577)
T ss_pred CHHHHHHHHHHHHHhcccchhccHHHHHHHHHHh---ccccHHHHHHHHHHHHhh----hh-hHhHHHHHHHHHHHhcCC
Confidence 778888888887764 32 125567888888876 789999999999999873 32 2233333333221100
Q ss_pred -CChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHH--HHHH-------H
Q 003913 271 -LSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVL--LSVL-------R 340 (787)
Q Consensus 271 -~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~--~~li-------~ 340 (787)
-..-..+++.++-....... .....+.. +..+=..+...+-+-+..+- +.+- .
T Consensus 201 ~~~l~~~d~~~~l~~~~~~~~---------------~~~~~~~~--~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~ 263 (577)
T KOG1258|consen 201 EKILLSIDELIQLRSDVAERS---------------KITHSQEP--LEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEK 263 (577)
T ss_pred hhhhcCHHHHHHHhhhHHhhh---------------hcccccCh--hHHHHHHHhhccCccchhhHHHHHHHHHHHHHHH
Confidence 00012222222211111100 00000001 11111111111111111111 0111 1
Q ss_pred HHHhcCChHHHHHHHHHHHhCC-------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003913 341 VCAKEGDVEDAEKTWLRLLESD-------NGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLC 413 (787)
Q Consensus 341 ~~~~~g~~~~A~~~~~~m~~~~-------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 413 (787)
++-..-...+....|+.-.+.- ..++..+|+.-++--.+.|+.+.+.-+|++..-. +.-=...|--.+.-..
T Consensus 264 ~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~ 342 (577)
T KOG1258|consen 264 VYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWME 342 (577)
T ss_pred HHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHH
Confidence 1111222222233333322221 1234567888888888899999999988887542 1111233444445455
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHH--
Q 003913 414 KAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAE-- 491 (787)
Q Consensus 414 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~-- 491 (787)
..|+.+.|..++....+--++-...+...-..-.-..|+...|..+++.+.+.++-.+..-..-+....+.|+.+.+.
T Consensus 343 ~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~ 422 (577)
T KOG1258|consen 343 SSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYK 422 (577)
T ss_pred HcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHH
Confidence 558888888887776664433333332222223445679999999999998866333334444466677788888887
Q ss_pred -HHHHHhhhCCCCCCCHHHHHHHHHH-----HHcCCCHHHHHHHHHHHHH
Q 003913 492 -EIFNHMHSDQTIGVNTRSCNIILSA-----YLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 492 -~l~~~m~~~~~~~p~~~t~~~li~~-----~~~~g~~~~A~~~~~~m~~ 535 (787)
+++.....-. -+......+.-- +.-.++.+.|..++.+|.+
T Consensus 423 ~~l~s~~~~~~---~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~ 469 (577)
T KOG1258|consen 423 NELYSSIYEGK---ENNGILEKLYVKFARLRYKIREDADLARIILLEAND 469 (577)
T ss_pred HHHHHHhcccc---cCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhh
Confidence 4444333221 122222222222 3346788899999998886
Done!