Query 003913
Match_columns 787
No_of_seqs 809 out of 4525
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 08:09:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003913.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003913hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.7E-35 5.9E-40 340.3 34.0 471 114-637 89-582 (597)
2 2xpi_A Anaphase-promoting comp 100.0 7.4E-36 2.5E-40 343.3 29.0 485 145-678 83-587 (597)
3 4g26_A Pentatricopeptide repea 100.0 3E-30 1E-34 285.2 26.7 216 197-450 7-223 (501)
4 4g26_A Pentatricopeptide repea 100.0 2.2E-30 7.5E-35 286.2 25.6 204 316-520 9-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 99.9 5E-24 1.7E-28 230.6 46.2 358 153-535 8-367 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 1.8E-24 6.1E-29 234.1 39.2 379 186-619 5-387 (388)
7 3c0w_A Intron-encoded endonucl 99.9 4.1E-24 1.4E-28 205.1 16.0 187 566-757 28-228 (235)
8 2gw1_A Mitochondrial precursor 99.9 4.7E-21 1.6E-25 215.2 30.6 410 153-613 15-491 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 2.3E-19 7.9E-24 197.8 42.7 318 177-514 23-370 (450)
10 2y4t_A DNAJ homolog subfamily 99.9 2E-19 6.7E-24 198.4 37.8 301 214-535 25-357 (450)
11 2gw1_A Mitochondrial precursor 99.9 9E-21 3.1E-25 212.9 26.0 411 180-637 6-481 (514)
12 3fp2_A TPR repeat-containing p 99.8 5.5E-19 1.9E-23 199.6 28.0 428 153-637 34-494 (537)
13 3fp2_A TPR repeat-containing p 99.8 2E-17 6.9E-22 186.7 39.6 394 120-535 36-490 (537)
14 3ieg_A DNAJ homolog subfamily 99.8 1.6E-15 5.3E-20 161.1 41.3 316 153-535 12-334 (359)
15 3ieg_A DNAJ homolog subfamily 99.8 1.2E-15 4.1E-20 161.9 39.1 294 180-551 3-315 (359)
16 3spa_A Mtrpol, DNA-directed RN 99.8 1.6E-19 5.3E-24 203.8 8.0 162 331-496 126-306 (1134)
17 3spa_A Mtrpol, DNA-directed RN 99.8 5.8E-19 2E-23 199.3 9.0 150 366-521 126-286 (1134)
18 3hym_B Cell division cycle pro 99.7 1.3E-16 4.4E-21 167.5 23.6 280 305-620 30-320 (330)
19 3hym_B Cell division cycle pro 99.7 3.3E-15 1.1E-19 156.7 32.9 291 214-523 21-321 (330)
20 1fch_A Peroxisomal targeting s 99.7 9.2E-17 3.1E-21 171.7 17.0 259 334-629 66-354 (368)
21 2xm6_A Protein corresponding t 99.7 8.2E-13 2.8E-17 147.1 49.3 342 157-537 56-433 (490)
22 1fch_A Peroxisomal targeting s 99.7 1.4E-15 4.8E-20 162.5 25.4 253 274-534 78-357 (368)
23 2xm6_A Protein corresponding t 99.7 2.3E-13 7.9E-18 151.5 42.6 340 161-537 24-397 (490)
24 1b89_A Protein (clathrin heavy 99.7 1.1E-16 3.8E-21 168.3 12.3 283 191-529 14-304 (449)
25 2ooe_A Cleavage stimulation fa 99.7 6E-13 2E-17 149.8 43.3 370 155-535 23-453 (530)
26 4eqf_A PEX5-related protein; a 99.7 5.1E-15 1.7E-19 158.1 23.2 270 300-595 68-349 (365)
27 4eqf_A PEX5-related protein; a 99.7 9.8E-15 3.4E-19 155.9 24.9 197 332-532 133-352 (365)
28 2ooe_A Cleavage stimulation fa 99.7 3.1E-14 1.1E-18 160.3 30.0 412 167-628 2-486 (530)
29 1xi4_A Clathrin heavy chain; a 99.7 4E-13 1.4E-17 156.8 39.3 331 141-544 982-1313(1630)
30 3cv0_A Peroxisome targeting si 99.6 1.7E-15 5.7E-20 158.8 17.0 230 300-535 24-268 (327)
31 4g1t_A Interferon-induced prot 99.6 1.5E-13 5.2E-18 152.2 33.0 368 214-638 50-463 (472)
32 3cv0_A Peroxisome targeting si 99.6 1.6E-14 5.5E-19 151.2 23.6 197 334-535 23-234 (327)
33 3mkr_A Coatomer subunit epsilo 99.6 3.1E-14 1E-18 146.5 24.3 246 274-535 13-263 (291)
34 1b89_A Protein (clathrin heavy 99.6 3.5E-16 1.2E-20 164.5 7.1 285 274-631 17-308 (449)
35 4g1t_A Interferon-induced prot 99.6 9.4E-13 3.2E-17 145.8 35.3 379 177-612 48-471 (472)
36 3mkr_A Coatomer subunit epsilo 99.6 3.7E-13 1.3E-17 138.3 26.1 211 305-530 73-288 (291)
37 3uq3_A Heat shock protein STI1 99.5 1.2E-12 4E-17 131.7 25.6 218 304-535 12-235 (258)
38 2pl2_A Hypothetical conserved 99.5 1E-12 3.5E-17 128.8 23.3 200 329-534 2-212 (217)
39 2ho1_A Type 4 fimbrial biogene 99.5 3.9E-12 1.3E-16 127.6 26.5 200 332-535 37-237 (252)
40 3uq3_A Heat shock protein STI1 99.5 3.3E-13 1.1E-17 135.8 18.1 235 332-611 5-253 (258)
41 2vq2_A PILW, putative fimbrial 99.5 1E-11 3.6E-16 121.7 26.6 201 331-535 7-210 (225)
42 2q7f_A YRRB protein; TPR, prot 99.5 2.3E-12 7.8E-17 128.4 21.5 200 331-535 22-221 (243)
43 1xnf_A Lipoprotein NLPI; TPR, 99.5 4.7E-12 1.6E-16 128.7 22.2 220 308-535 16-243 (275)
44 1xi4_A Clathrin heavy chain; a 99.5 1.7E-10 6E-15 134.9 37.2 311 153-528 1058-1376(1630)
45 2ho1_A Type 4 fimbrial biogene 99.5 1.9E-11 6.4E-16 122.6 25.9 202 297-501 37-239 (252)
46 2pl2_A Hypothetical conserved 99.4 7.3E-12 2.5E-16 122.7 21.8 196 365-597 3-209 (217)
47 3u4t_A TPR repeat-containing p 99.4 3.1E-12 1.1E-16 129.9 19.1 255 334-617 5-267 (272)
48 1ouv_A Conserved hypothetical 99.4 2.1E-10 7.2E-15 116.6 32.0 216 304-537 13-252 (273)
49 2vq2_A PILW, putative fimbrial 99.4 7E-11 2.4E-15 115.8 27.4 201 298-501 9-212 (225)
50 1xnf_A Lipoprotein NLPI; TPR, 99.4 1.6E-11 5.4E-16 124.8 23.0 246 274-530 19-269 (275)
51 2h6f_A Protein farnesyltransfe 99.4 4.3E-11 1.5E-15 127.3 26.3 228 305-544 105-352 (382)
52 2q7f_A YRRB protein; TPR, prot 99.4 1.5E-11 5.3E-16 122.3 21.7 210 299-514 25-234 (243)
53 2h6f_A Protein farnesyltransfe 99.4 5E-12 1.7E-16 134.5 18.5 249 332-618 97-366 (382)
54 3u4t_A TPR repeat-containing p 99.4 4.1E-11 1.4E-15 121.6 24.2 232 304-543 10-253 (272)
55 3vtx_A MAMA; tetratricopeptide 99.4 1E-10 3.5E-15 110.9 24.5 170 366-543 4-173 (184)
56 1ouv_A Conserved hypothetical 99.4 1.7E-10 5.7E-15 117.3 26.6 192 331-537 5-216 (273)
57 2ond_A Cleavage stimulation fa 99.3 3.3E-10 1.1E-14 117.5 27.5 217 314-535 33-269 (308)
58 3sf4_A G-protein-signaling mod 99.3 1.2E-11 4.1E-16 133.5 16.1 303 299-628 11-370 (406)
59 3vtx_A MAMA; tetratricopeptide 99.3 2.7E-10 9.2E-15 108.0 23.3 168 331-501 4-171 (184)
60 3e4b_A ALGK; tetratricopeptide 99.3 1.7E-10 6E-15 126.4 22.8 343 153-538 12-389 (452)
61 3ulq_A Response regulator aspa 99.3 1.6E-10 5.3E-15 124.1 21.3 299 230-535 24-367 (383)
62 4abn_A Tetratricopeptide repea 99.3 1.6E-10 5.4E-15 127.6 21.0 214 313-533 84-318 (474)
63 4a1s_A PINS, partner of inscut 99.3 8.8E-11 3E-15 127.2 17.5 261 274-535 62-371 (411)
64 3nf1_A KLC 1, kinesin light ch 99.2 1.4E-11 4.7E-16 127.7 9.9 247 368-631 28-304 (311)
65 4abn_A Tetratricopeptide repea 99.2 2.9E-10 9.9E-15 125.5 21.0 187 347-543 83-290 (474)
66 4a1s_A PINS, partner of inscut 99.2 7.9E-11 2.7E-15 127.5 16.2 271 300-597 51-367 (411)
67 3sf4_A G-protein-signaling mod 99.2 4.2E-10 1.4E-14 121.3 21.6 277 252-535 7-335 (406)
68 3ro2_A PINS homolog, G-protein 99.2 2.1E-10 7.1E-15 119.8 18.2 272 297-596 5-326 (338)
69 2ond_A Cleavage stimulation fa 99.2 1.4E-09 4.7E-14 112.8 24.1 226 349-607 33-277 (308)
70 3nf1_A KLC 1, kinesin light ch 99.2 2.2E-10 7.6E-15 118.4 17.5 238 296-535 26-306 (311)
71 3ro2_A PINS homolog, G-protein 99.2 3E-10 1E-14 118.5 18.7 261 274-535 19-331 (338)
72 3as5_A MAMA; tetratricopeptide 99.2 1.1E-09 3.9E-14 103.2 21.0 164 368-535 9-172 (186)
73 4e6h_A MRNA 3'-END-processing 99.2 2.2E-07 7.5E-12 105.5 41.4 374 153-536 75-570 (679)
74 3ulq_A Response regulator aspa 99.2 3.9E-10 1.3E-14 120.9 17.2 293 305-628 20-362 (383)
75 3as5_A MAMA; tetratricopeptide 99.2 3.7E-09 1.3E-13 99.6 21.8 165 333-500 9-173 (186)
76 3e4b_A ALGK; tetratricopeptide 99.1 9.3E-09 3.2E-13 112.6 26.8 318 186-538 9-353 (452)
77 3q15_A PSP28, response regulat 99.1 5.6E-09 1.9E-13 111.7 23.3 233 300-535 104-364 (378)
78 4gyw_A UDP-N-acetylglucosamine 99.1 2.6E-09 8.8E-14 122.8 21.7 165 367-535 9-173 (723)
79 4e6h_A MRNA 3'-END-processing 99.1 1.9E-07 6.6E-12 105.9 36.5 436 159-605 47-575 (679)
80 4i17_A Hypothetical protein; T 99.1 6.4E-09 2.2E-13 102.3 21.1 195 330-535 5-208 (228)
81 4i17_A Hypothetical protein; T 99.1 2.1E-09 7.2E-14 105.8 16.8 208 366-615 6-224 (228)
82 4gyw_A UDP-N-acetylglucosamine 99.1 6.7E-09 2.3E-13 119.4 21.6 168 329-499 5-173 (723)
83 3edt_B KLC 2, kinesin light ch 99.1 1.7E-09 5.7E-14 109.9 14.8 225 309-535 13-280 (283)
84 2fo7_A Synthetic consensus TPR 99.0 2.1E-08 7.3E-13 88.5 17.9 128 405-535 4-131 (136)
85 1hz4_A MALT regulatory protein 99.0 2.8E-07 9.6E-12 98.0 28.6 274 185-500 19-322 (373)
86 3q15_A PSP28, response regulat 98.9 9.7E-08 3.3E-12 101.9 24.2 314 177-499 7-364 (378)
87 1hz4_A MALT regulatory protein 98.9 2.4E-07 8.3E-12 98.5 27.2 261 274-535 28-321 (373)
88 2fo7_A Synthetic consensus TPR 98.9 5.3E-08 1.8E-12 85.9 18.4 130 369-500 3-132 (136)
89 3edt_B KLC 2, kinesin light ch 98.9 8.8E-09 3E-13 104.4 14.4 224 275-500 23-281 (283)
90 1qqe_A Vesicular transport pro 98.9 9E-08 3.1E-12 98.1 19.5 211 312-544 32-273 (292)
91 3qky_A Outer membrane assembly 98.8 2.7E-07 9.4E-12 92.6 19.9 183 331-535 14-223 (261)
92 1qqe_A Vesicular transport pro 98.8 2.4E-07 8.1E-12 94.9 19.4 238 236-500 3-269 (292)
93 2pzi_A Probable serine/threoni 98.8 7.4E-08 2.5E-12 111.1 17.2 174 343-522 402-583 (681)
94 3dra_A Protein farnesyltransfe 98.8 4.5E-06 1.5E-10 85.0 27.5 241 275-543 31-291 (306)
95 3qky_A Outer membrane assembly 98.8 3.5E-07 1.2E-11 91.9 19.1 180 300-501 18-225 (261)
96 3urz_A Uncharacterized protein 98.7 5.2E-07 1.8E-11 87.1 19.4 124 408-535 60-185 (208)
97 3rjv_A Putative SEL1 repeat pr 98.7 1E-06 3.6E-11 85.3 21.3 176 350-538 4-199 (212)
98 2ifu_A Gamma-SNAP; membrane fu 98.7 8E-07 2.7E-11 91.7 21.2 227 272-528 3-253 (307)
99 3urz_A Uncharacterized protein 98.7 7E-07 2.4E-11 86.2 19.2 165 341-514 13-197 (208)
100 3mv2_B Coatomer subunit epsilo 98.7 1.2E-06 4E-11 88.4 20.8 178 316-500 85-282 (310)
101 2yhc_A BAMD, UPF0169 lipoprote 98.7 1.8E-06 6E-11 84.5 20.8 187 331-536 3-213 (225)
102 2pzi_A Probable serine/threoni 98.7 1E-07 3.6E-12 109.9 13.5 158 378-544 402-567 (681)
103 3mv2_B Coatomer subunit epsilo 98.6 1.2E-06 4.2E-11 88.2 19.1 179 351-535 85-281 (310)
104 2vsy_A XCC0866; transferase, g 98.6 5.9E-07 2E-11 101.6 18.7 154 345-501 2-158 (568)
105 2vsy_A XCC0866; transferase, g 98.6 6.5E-07 2.2E-11 101.2 18.7 154 380-537 2-158 (568)
106 2yhc_A BAMD, UPF0169 lipoprote 98.6 3E-06 1E-10 82.8 21.2 179 303-501 10-214 (225)
107 3qou_A Protein YBBN; thioredox 98.6 5E-07 1.7E-11 92.2 16.1 165 367-534 117-282 (287)
108 3rjv_A Putative SEL1 repeat pr 98.6 3E-06 1E-10 82.0 20.7 176 315-501 4-198 (212)
109 3qou_A Protein YBBN; thioredox 98.6 8E-07 2.7E-11 90.7 17.1 166 330-499 115-283 (287)
110 2r5s_A Uncharacterized protein 98.6 3.9E-07 1.3E-11 85.3 13.2 161 372-535 11-172 (176)
111 2uy1_A Cleavage stimulation fa 98.6 5.4E-05 1.8E-09 83.2 32.3 333 160-534 11-411 (493)
112 4ga2_A E3 SUMO-protein ligase 98.6 1.4E-07 4.9E-12 85.7 9.8 140 377-521 7-148 (150)
113 4ga2_A E3 SUMO-protein ligase 98.6 3.1E-07 1.1E-11 83.5 10.8 142 342-486 7-149 (150)
114 1hh8_A P67PHOX, NCF-2, neutrop 98.5 3.6E-06 1.2E-10 81.2 18.3 123 373-500 12-150 (213)
115 2r5s_A Uncharacterized protein 98.5 9.9E-07 3.4E-11 82.5 13.7 161 335-499 9-172 (176)
116 3dra_A Protein farnesyltransfe 98.5 2.5E-06 8.4E-11 86.9 17.4 211 384-630 50-283 (306)
117 1hh8_A P67PHOX, NCF-2, neutrop 98.5 2.4E-06 8.2E-11 82.5 16.8 128 403-536 7-150 (213)
118 2qfc_A PLCR protein; TPR, HTH, 98.5 1.6E-05 5.3E-10 81.3 22.9 168 368-535 76-265 (293)
119 1a17_A Serine/threonine protei 98.5 4.6E-06 1.6E-10 76.6 17.0 130 403-535 14-145 (166)
120 2ifu_A Gamma-SNAP; membrane fu 98.5 3.6E-06 1.2E-10 86.8 17.7 198 310-534 4-222 (307)
121 3u3w_A Transcriptional activat 98.5 1.4E-05 4.9E-10 81.5 22.1 163 373-535 81-265 (293)
122 3gyz_A Chaperone protein IPGC; 98.4 7.2E-06 2.5E-10 74.2 16.7 98 437-536 36-133 (151)
123 1na0_A Designed protein CTPR3; 98.4 7E-06 2.4E-10 70.9 16.3 96 404-500 11-106 (125)
124 4gco_A Protein STI-1; structur 98.4 3.9E-06 1.3E-10 73.4 14.6 100 438-543 14-113 (126)
125 1a17_A Serine/threonine protei 98.4 1.2E-05 4E-10 73.8 17.7 129 368-498 14-144 (166)
126 3u3w_A Transcriptional activat 98.4 3.6E-05 1.2E-09 78.5 22.6 164 336-499 79-265 (293)
127 1na0_A Designed protein CTPR3; 98.4 1.7E-05 5.8E-10 68.4 17.1 114 368-483 10-123 (125)
128 4gco_A Protein STI-1; structur 98.4 1.1E-05 3.6E-10 70.6 15.6 107 404-513 15-121 (126)
129 3q7a_A Farnesyltransferase alp 98.4 0.00042 1.4E-08 71.2 29.1 241 275-543 52-335 (349)
130 2vyi_A SGTA protein; chaperone 98.3 8.7E-06 3E-10 71.0 14.5 116 404-522 14-129 (131)
131 2lni_A Stress-induced-phosphop 98.3 7.9E-06 2.7E-10 71.6 14.2 114 403-519 17-130 (133)
132 3gw4_A Uncharacterized protein 98.3 9.8E-06 3.4E-10 77.2 14.6 133 403-535 27-175 (203)
133 1p5q_A FKBP52, FK506-binding p 98.3 1.3E-05 4.5E-10 83.6 16.5 97 437-535 196-293 (336)
134 3gw4_A Uncharacterized protein 98.3 1.4E-05 4.7E-10 76.2 15.3 155 344-499 4-175 (203)
135 2qfc_A PLCR protein; TPR, HTH, 98.3 0.00011 3.8E-09 74.8 23.1 167 333-499 76-265 (293)
136 2c2l_A CHIP, carboxy terminus 98.3 4.2E-06 1.5E-10 84.9 12.2 194 331-535 3-198 (281)
137 2lni_A Stress-induced-phosphop 98.3 1.2E-05 4.2E-10 70.4 13.8 99 435-535 14-112 (133)
138 4gcn_A Protein STI-1; structur 98.3 1.1E-05 3.7E-10 70.7 13.2 109 438-548 9-122 (127)
139 2vyi_A SGTA protein; chaperone 98.3 2.7E-05 9.2E-10 67.7 15.4 117 368-486 13-129 (131)
140 2e2e_A Formate-dependent nitri 98.2 6.2E-06 2.1E-10 77.0 11.8 118 415-535 23-143 (177)
141 3gyz_A Chaperone protein IPGC; 98.2 2E-05 6.7E-10 71.3 14.6 97 403-500 37-133 (151)
142 2vgx_A Chaperone SYCD; alterna 98.2 4E-06 1.4E-10 75.8 9.9 98 436-535 20-117 (148)
143 2e2e_A Formate-dependent nitri 98.2 8.6E-06 2.9E-10 76.0 12.3 121 379-501 22-145 (177)
144 2c2l_A CHIP, carboxy terminus 98.2 1E-06 3.4E-11 89.6 6.3 98 436-535 3-100 (281)
145 1p5q_A FKBP52, FK506-binding p 98.2 3E-05 1E-09 80.8 17.7 146 332-499 147-293 (336)
146 3dss_A Geranylgeranyl transfer 98.2 0.00095 3.2E-08 68.3 28.1 191 348-549 90-313 (331)
147 4f3v_A ESX-1 secretion system 98.2 1.1E-05 3.7E-10 80.3 13.2 187 344-536 18-237 (282)
148 1elw_A TPR1-domain of HOP; HOP 98.2 6.5E-05 2.2E-09 63.8 16.5 95 405-500 7-101 (118)
149 2uy1_A Cleavage stimulation fa 98.2 0.0054 1.9E-07 67.1 35.3 203 277-499 196-412 (493)
150 2fbn_A 70 kDa peptidylprolyl i 98.2 2.7E-06 9.4E-11 81.2 7.8 130 404-535 40-185 (198)
151 3q7a_A Farnesyltransferase alp 98.2 9E-05 3.1E-09 76.2 19.2 151 381-535 68-236 (349)
152 4f3v_A ESX-1 secretion system 98.2 5.8E-05 2E-09 75.0 16.9 196 309-512 18-246 (282)
153 3q49_B STIP1 homology and U bo 98.1 3.4E-05 1.2E-09 68.2 13.9 99 435-535 7-105 (137)
154 2vgx_A Chaperone SYCD; alterna 98.1 1.2E-05 4E-10 72.7 10.9 97 403-500 22-118 (148)
155 2fbn_A 70 kDa peptidylprolyl i 98.1 4.9E-06 1.7E-10 79.4 8.8 157 343-501 15-187 (198)
156 3upv_A Heat shock protein STI1 98.1 4.6E-05 1.6E-09 66.3 14.2 97 437-535 4-100 (126)
157 2xcb_A PCRH, regulatory protei 98.1 2.2E-05 7.5E-10 70.2 12.1 97 437-535 18-114 (142)
158 1elr_A TPR2A-domain of HOP; HO 98.1 4.9E-05 1.7E-09 66.1 13.7 97 438-536 5-108 (131)
159 3upv_A Heat shock protein STI1 98.1 0.00011 3.7E-09 63.9 15.3 97 403-500 5-101 (126)
160 3sz7_A HSC70 cochaperone (SGT) 98.1 4.7E-05 1.6E-09 69.9 13.4 97 437-535 11-107 (164)
161 2kck_A TPR repeat; tetratricop 98.1 2.9E-05 1E-09 65.4 11.0 96 438-535 7-105 (112)
162 1hxi_A PEX5, peroxisome target 98.0 3E-05 1E-09 67.1 11.1 94 440-535 20-113 (121)
163 1elw_A TPR1-domain of HOP; HOP 98.0 0.0002 6.8E-09 60.7 16.3 110 367-478 4-113 (118)
164 3dss_A Geranylgeranyl transfer 98.0 0.00074 2.5E-08 69.0 22.7 192 343-543 40-270 (331)
165 2dba_A Smooth muscle cell asso 98.0 0.00016 5.3E-09 64.5 16.0 97 402-500 28-128 (148)
166 3sz7_A HSC70 cochaperone (SGT) 98.0 8.7E-05 3E-09 68.0 14.4 99 402-501 11-109 (164)
167 1elr_A TPR2A-domain of HOP; HO 98.0 4.9E-05 1.7E-09 66.1 11.9 107 404-514 6-119 (131)
168 3q49_B STIP1 homology and U bo 98.0 9.4E-05 3.2E-09 65.2 13.7 99 401-500 8-106 (137)
169 2kck_A TPR repeat; tetratricop 98.0 6.4E-05 2.2E-09 63.2 11.6 99 402-501 6-107 (112)
170 2xcb_A PCRH, regulatory protei 98.0 0.0001 3.6E-09 65.7 13.3 96 404-500 20-115 (142)
171 4gcn_A Protein STI-1; structur 98.0 0.00032 1.1E-08 61.1 16.1 103 404-510 10-119 (127)
172 4b4t_Q 26S proteasome regulato 97.9 0.00044 1.5E-08 74.6 20.6 196 340-535 12-244 (434)
173 1hxi_A PEX5, peroxisome target 97.9 0.00014 4.7E-09 62.9 12.1 95 405-500 20-114 (121)
174 2dba_A Smooth muscle cell asso 97.9 0.00043 1.5E-08 61.6 15.9 107 367-476 28-138 (148)
175 3ro3_A PINS homolog, G-protein 97.8 0.0001 3.6E-09 66.6 11.5 97 439-535 51-157 (164)
176 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 0.00018 6.1E-09 78.4 14.7 146 367-535 268-414 (457)
177 2hr2_A Hypothetical protein; a 97.8 0.00019 6.3E-09 64.4 11.8 101 439-543 13-134 (159)
178 3ro3_A PINS homolog, G-protein 97.8 0.00014 4.9E-09 65.7 11.6 131 369-499 11-157 (164)
179 3rkv_A Putative peptidylprolyl 97.8 0.00021 7.2E-09 65.3 12.7 68 470-543 62-129 (162)
180 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 0.00029 9.9E-09 76.8 15.9 147 331-499 267-414 (457)
181 4b4t_Q 26S proteasome regulato 97.8 0.00073 2.5E-08 72.9 19.0 193 307-499 14-244 (434)
182 2xev_A YBGF; tetratricopeptide 97.8 0.00028 9.6E-09 61.2 12.4 92 442-535 7-104 (129)
183 2xev_A YBGF; tetratricopeptide 97.7 0.00094 3.2E-08 57.8 15.4 92 408-500 8-105 (129)
184 3k9i_A BH0479 protein; putativ 97.7 4.6E-05 1.6E-09 65.4 6.5 85 416-500 4-90 (117)
185 1wao_1 Serine/threonine protei 97.7 7E-05 2.4E-09 82.1 9.5 117 412-531 16-134 (477)
186 1dce_A Protein (RAB geranylger 97.7 0.0018 6.1E-08 72.3 20.8 153 383-543 45-224 (567)
187 1ihg_A Cyclophilin 40; ppiase 97.7 0.0003 1E-08 74.1 13.7 139 367-528 223-362 (370)
188 2if4_A ATFKBP42; FKBP-like, al 97.7 0.00012 4.1E-09 76.3 9.9 148 367-535 179-327 (338)
189 3rkv_A Putative peptidylprolyl 97.6 0.00063 2.1E-08 62.0 13.1 65 437-501 63-127 (162)
190 1dce_A Protein (RAB geranylger 97.6 0.0035 1.2E-07 69.9 21.5 175 345-524 42-243 (567)
191 1wao_1 Serine/threonine protei 97.6 0.00019 6.4E-09 78.7 10.8 92 442-535 11-102 (477)
192 1ihg_A Cyclophilin 40; ppiase 97.6 0.0007 2.4E-08 71.3 14.3 140 332-492 223-362 (370)
193 3k9i_A BH0479 protein; putativ 97.5 0.00022 7.4E-09 61.1 7.4 84 381-465 4-89 (117)
194 2hr2_A Hypothetical protein; a 97.5 0.0012 4E-08 59.2 12.1 61 439-499 59-130 (159)
195 2if4_A ATFKBP42; FKBP-like, al 97.5 0.00038 1.3E-08 72.4 10.5 149 332-500 179-328 (338)
196 1klx_A Cysteine rich protein B 97.4 0.0013 4.3E-08 58.2 12.0 111 416-537 9-127 (138)
197 2l6j_A TPR repeat-containing p 97.4 0.00013 4.4E-09 61.5 4.5 64 437-500 4-67 (111)
198 3n71_A Histone lysine methyltr 97.3 0.0032 1.1E-07 68.5 15.5 124 412-535 319-463 (490)
199 2l6j_A TPR repeat-containing p 97.3 0.00029 9.8E-09 59.2 5.5 95 402-497 4-104 (111)
200 1na3_A Designed protein CTPR2; 97.3 0.0022 7.7E-08 51.2 10.6 79 438-518 10-88 (91)
201 3n71_A Histone lysine methyltr 97.3 0.0022 7.5E-08 69.8 13.5 124 376-499 318-463 (490)
202 2kat_A Uncharacterized protein 97.2 0.0015 5.1E-08 55.4 9.8 79 455-535 3-81 (115)
203 2kat_A Uncharacterized protein 97.2 0.0011 3.8E-08 56.2 8.8 80 420-500 3-82 (115)
204 1zu2_A Mitochondrial import re 97.1 0.00079 2.7E-08 60.2 6.4 85 449-535 14-119 (158)
205 1klx_A Cysteine rich protein B 97.0 0.018 6.2E-07 50.6 15.0 17 274-290 9-25 (138)
206 1na3_A Designed protein CTPR2; 97.0 0.0078 2.7E-07 47.9 11.6 79 404-483 11-89 (91)
207 1zu2_A Mitochondrial import re 96.9 0.0026 8.9E-08 56.8 8.1 95 416-514 16-131 (158)
208 3ma5_A Tetratricopeptide repea 96.9 0.0031 1.1E-07 51.9 8.0 61 438-498 8-68 (100)
209 3ma5_A Tetratricopeptide repea 96.8 0.0049 1.7E-07 50.7 8.8 66 468-535 4-69 (100)
210 2kc7_A BFR218_protein; tetratr 96.3 0.0063 2.1E-07 49.7 6.1 57 444-500 7-64 (99)
211 3ly7_A Transcriptional activat 96.1 0.066 2.2E-06 54.9 13.5 67 466-535 272-338 (372)
212 3qww_A SET and MYND domain-con 96.0 0.032 1.1E-06 59.5 11.5 85 451-535 312-410 (433)
213 3qww_A SET and MYND domain-con 95.8 0.053 1.8E-06 57.8 12.2 85 415-499 311-410 (433)
214 3qwp_A SET and MYND domain-con 95.8 0.086 3E-06 56.2 13.7 92 444-535 294-399 (429)
215 2kc7_A BFR218_protein; tetratr 95.8 0.032 1.1E-06 45.3 8.0 63 410-473 8-71 (99)
216 3qwp_A SET and MYND domain-con 95.7 0.12 4.2E-06 55.1 14.2 91 409-499 294-399 (429)
217 1pc2_A Mitochondria fission pr 95.4 0.072 2.5E-06 46.9 9.3 85 453-543 14-103 (152)
218 3ly7_A Transcriptional activat 95.4 0.31 1.1E-05 50.0 15.1 75 434-512 274-348 (372)
219 1wy6_A Hypothetical protein ST 95.2 1.2 4.1E-05 37.7 15.9 137 380-538 20-156 (172)
220 3mkq_A Coatomer beta'-subunit; 95.1 0.25 8.5E-06 57.7 16.0 100 413-533 663-762 (814)
221 3bee_A Putative YFRE protein; 94.8 0.15 5E-06 41.0 8.7 67 468-536 3-72 (93)
222 3mkq_A Coatomer beta'-subunit; 94.7 0.39 1.3E-05 56.0 16.1 28 366-393 680-707 (814)
223 3bee_A Putative YFRE protein; 94.7 0.18 6E-06 40.6 9.0 67 435-501 4-73 (93)
224 1pc2_A Mitochondria fission pr 94.6 0.2 6.7E-06 44.2 9.7 83 418-501 14-101 (152)
225 3mkq_B Coatomer subunit alpha; 93.3 2 6.7E-05 38.8 13.8 104 374-497 12-115 (177)
226 2v5f_A Prolyl 4-hydroxylase su 93.0 0.88 3E-05 37.1 10.6 62 439-500 7-75 (104)
227 2v5f_A Prolyl 4-hydroxylase su 92.6 1.3 4.3E-05 36.2 11.0 67 405-471 8-80 (104)
228 1wy6_A Hypothetical protein ST 92.5 4.5 0.00015 34.4 15.6 134 344-501 19-155 (172)
229 1nzn_A CGI-135 protein, fissio 92.2 0.95 3.3E-05 38.2 9.6 81 453-535 17-102 (126)
230 3mkq_B Coatomer subunit alpha; 91.8 7.1 0.00024 35.1 16.1 101 342-463 15-115 (177)
231 1nzn_A CGI-135 protein, fissio 90.9 1.6 5.4E-05 36.9 9.6 85 416-501 15-104 (126)
232 3u64_A Protein TP_0956; tetrat 90.7 1.6 5.3E-05 43.0 10.7 82 418-501 179-270 (301)
233 4gns_B Protein CSD3, chitin bi 89.6 3.3 0.00011 46.9 13.8 53 446-498 346-398 (754)
234 2ff4_A Probable regulatory pro 88.5 2.5 8.5E-05 44.2 11.3 78 473-552 173-255 (388)
235 4ady_A RPN2, 26S proteasome re 88.4 22 0.00074 41.2 19.4 152 342-500 500-658 (963)
236 3u64_A Protein TP_0956; tetrat 88.0 3 0.0001 41.0 10.5 93 160-256 179-279 (301)
237 4h7y_A Dual specificity protei 87.3 13 0.00044 32.3 12.7 51 451-501 74-124 (161)
238 4h7y_A Dual specificity protei 87.1 14 0.00047 32.1 12.8 69 484-556 73-142 (161)
239 1v54_E Cytochrome C oxidase po 84.2 4 0.00014 32.6 7.4 62 418-479 26-87 (109)
240 4gns_B Protein CSD3, chitin bi 83.7 5 0.00017 45.5 11.1 55 478-534 344-398 (754)
241 4b4t_P 26S proteasome regulato 83.2 50 0.0017 34.9 19.6 169 329-498 53-245 (445)
242 2ff4_A Probable regulatory pro 81.9 5.1 0.00018 41.7 9.8 69 440-509 174-247 (388)
243 3ffl_A Anaphase-promoting comp 78.1 33 0.0011 30.3 12.0 29 472-500 123-151 (167)
244 2wpv_A GET4, UPF0363 protein Y 77.3 60 0.0021 32.2 17.0 66 334-414 35-104 (312)
245 2y69_E Cytochrome C oxidase su 76.5 9 0.00031 32.4 7.4 60 420-479 71-130 (152)
246 2wpv_A GET4, UPF0363 protein Y 75.9 66 0.0022 31.9 21.8 26 366-391 133-158 (312)
247 1zbp_A Hypothetical protein VP 73.6 9.6 0.00033 36.8 7.9 58 480-543 6-63 (273)
248 3lpz_A GET4 (YOR164C homolog); 72.6 82 0.0028 31.5 20.3 67 334-415 37-107 (336)
249 3ffl_A Anaphase-promoting comp 70.6 27 0.00091 30.9 9.5 116 405-534 23-149 (167)
250 2p58_C Putative type III secre 70.1 38 0.0013 27.0 9.0 89 156-258 19-107 (116)
251 3o48_A Mitochondria fission 1 69.8 19 0.00064 30.5 7.9 65 468-535 37-106 (134)
252 4fhn_B Nucleoporin NUP120; pro 68.4 28 0.00096 42.0 12.5 143 373-524 818-988 (1139)
253 1v54_E Cytochrome C oxidase po 68.1 45 0.0015 26.7 9.4 73 187-264 16-89 (109)
254 2vs7_A I-DMOI, homing endonucl 65.7 14 0.00049 34.0 7.3 54 690-744 124-180 (199)
255 2uwj_G Type III export protein 65.3 36 0.0012 27.0 8.0 89 156-258 18-106 (115)
256 4a1g_A Mitotic checkpoint seri 65.3 66 0.0023 27.9 10.8 54 160-213 81-134 (152)
257 3lvg_A Clathrin heavy chain 1; 65.0 0.0029 1E-07 66.0 -19.4 200 369-618 56-276 (624)
258 3o48_A Mitochondria fission 1 61.5 74 0.0025 26.9 10.2 68 434-501 37-108 (134)
259 4fhn_B Nucleoporin NUP120; pro 59.6 1.3E+02 0.0044 36.2 16.0 146 337-489 817-989 (1139)
260 2y69_E Cytochrome C oxidase su 59.0 77 0.0026 26.8 9.4 73 187-264 59-132 (152)
261 4b4t_P 26S proteasome regulato 58.8 1.8E+02 0.0061 30.5 20.9 187 346-535 30-246 (445)
262 2p58_C Putative type III secre 58.7 68 0.0023 25.6 8.9 50 480-536 49-98 (116)
263 4b4t_R RPN7, 26S proteasome re 58.2 76 0.0026 33.2 12.2 27 698-724 360-387 (429)
264 3txn_A 26S proteasome regulato 55.9 1.9E+02 0.0064 29.8 18.2 27 698-724 329-356 (394)
265 2uwj_G Type III export protein 55.1 67 0.0023 25.5 7.9 52 479-537 47-98 (115)
266 1qsa_A Protein (soluble lytic 54.0 2.6E+02 0.0088 30.8 25.1 122 409-535 222-347 (618)
267 1zbp_A Hypothetical protein VP 53.9 40 0.0014 32.5 8.1 54 411-465 6-59 (273)
268 4b4t_R RPN7, 26S proteasome re 53.1 1.1E+02 0.0038 31.9 12.5 95 369-465 133-236 (429)
269 3esl_A Checkpoint serine/threo 53.1 76 0.0026 29.0 9.4 52 487-538 95-146 (202)
270 4ady_A RPN2, 26S proteasome re 52.0 3.3E+02 0.011 31.6 32.1 255 274-535 388-657 (963)
271 1y8m_A FIS1; mitochondria, unk 49.1 1.3E+02 0.0043 25.8 12.1 65 469-535 37-105 (144)
272 1y8m_A FIS1; mitochondria, unk 45.9 1.4E+02 0.0049 25.5 11.7 68 329-396 36-106 (144)
273 2wvi_A Mitotic checkpoint seri 45.3 50 0.0017 29.1 6.8 48 163-210 79-126 (164)
274 1wdy_A 2-5A-dependent ribonucl 43.8 14 0.00046 35.9 3.4 18 186-203 8-25 (285)
275 3esl_A Checkpoint serine/threo 41.7 1.1E+02 0.0039 27.9 8.7 53 160-212 95-147 (202)
276 2dch_X Putative homing endonuc 41.6 12 0.00042 35.0 2.4 58 697-757 151-208 (216)
277 2nsz_A Programmed cell death p 40.3 1.3E+02 0.0046 25.1 8.6 63 474-538 10-74 (129)
278 4aez_C MAD3, mitotic spindle c 40.2 79 0.0027 29.4 7.5 49 161-209 131-179 (223)
279 1x60_A Sporulation-specific N- 38.3 46 0.0016 25.0 4.9 35 697-731 18-52 (79)
280 1wdy_A 2-5A-dependent ribonucl 35.7 14 0.00047 35.9 1.9 21 218-242 6-26 (285)
281 3ltm_A Alpha-REP4; protein eng 35.6 2.5E+02 0.0084 25.3 18.4 154 330-499 31-184 (211)
282 1uta_A FTSN, MSGA, cell divisi 35.3 41 0.0014 25.5 4.2 45 698-742 19-67 (81)
283 3lvg_A Clathrin heavy chain 1; 34.1 0.18 6E-06 53.0 -12.3 206 305-532 91-316 (624)
284 1k1a_A B-cell lymphoma 3-encod 33.7 44 0.0015 31.2 5.2 25 339-363 13-37 (241)
285 2nsz_A Programmed cell death p 33.4 1.1E+02 0.0037 25.7 6.9 63 371-434 11-75 (129)
286 3bu8_A Telomeric repeat-bindin 33.3 2.9E+02 0.0099 25.4 10.3 34 257-294 20-53 (235)
287 1k1a_A B-cell lymphoma 3-encod 32.7 22 0.00075 33.4 2.7 28 187-214 13-40 (241)
288 2wvi_A Mitotic checkpoint seri 32.6 1.1E+02 0.0038 26.9 6.9 55 489-543 78-132 (164)
289 2d2s_A Exocyst complex compone 31.7 2.4E+02 0.0084 26.4 9.8 21 374-394 25-45 (235)
290 2ion_A PDCD4, programmed cell 30.8 1.4E+02 0.0047 26.0 7.2 62 475-538 13-76 (152)
291 4a1g_A Mitotic checkpoint seri 29.4 2.4E+02 0.0082 24.4 8.4 54 489-542 83-136 (152)
292 3eiq_C Programmed cell death p 28.3 4.7E+02 0.016 26.3 15.5 66 370-436 220-287 (358)
293 1dm5_A Annexin XII E105K mutan 26.8 4.3E+02 0.015 26.0 11.1 180 161-358 88-288 (315)
294 2d2s_A Exocyst complex compone 26.6 2.9E+02 0.0099 25.9 9.3 91 336-429 22-118 (235)
295 2ion_A PDCD4, programmed cell 26.3 98 0.0034 26.9 5.5 63 371-434 13-77 (152)
296 3t8k_A Uncharacterized protein 25.1 75 0.0026 28.5 4.8 91 190-294 13-108 (186)
297 1oai_A Nuclear RNA export fact 23.8 46 0.0016 23.6 2.3 23 485-507 34-56 (59)
298 3eu9_A Huntingtin-interacting 23.4 27 0.00092 32.6 1.5 223 187-434 13-239 (240)
299 3eiq_C Programmed cell death p 23.0 5.9E+02 0.02 25.6 13.4 79 473-553 219-299 (358)
300 1dq3_A Endonuclease; PI-PFUI, 22.8 1.2E+02 0.004 32.0 6.4 66 679-745 247-317 (454)
301 3txn_A 26S proteasome regulato 22.2 6.4E+02 0.022 25.7 27.7 90 305-394 107-208 (394)
302 3aji_A 26S proteasome non-ATPa 21.7 40 0.0014 31.3 2.3 18 188-205 11-28 (231)
303 3kea_A K1L; tropism, ANK repea 21.6 66 0.0022 31.3 3.9 154 337-508 64-224 (285)
304 4e1p_A Protein LSR2; anti-para 21.5 23 0.0008 25.2 0.4 27 720-746 27-53 (61)
305 3jxi_A Vanilloid receptor-rela 20.8 49 0.0017 31.4 2.7 21 514-534 229-249 (260)
306 2fu4_A Ferric uptake regulatio 20.1 2.7E+02 0.0093 20.6 7.0 58 323-381 8-66 (83)
307 2r9g_A AAA ATPase, central reg 20.0 4.9E+02 0.017 23.6 10.1 43 373-416 17-62 (204)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-35 Score=340.26 Aligned_cols=471 Identities=9% Similarity=-0.022 Sum_probs=283.8
Q ss_pred HHHHHhhccCCCcchhhHHHHHHhhccccCCcchHHHHH--HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHH
Q 003913 114 AKLAWLCKELPSHKGGTLVRILNAQKKWLRQEDGTYLAV--HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMG 191 (787)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~t~~~~--~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~ 191 (787)
.++..+.+.+....+..+++.+.. ..|+..++..+ .|.+.|++++|..+|+.+... +++..+++.++.+|.
T Consensus 89 ~~~~~~~~~g~~~~A~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~ 161 (597)
T 2xpi_A 89 LWRHDALMQQQYKCAAFVGEKVLD----ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY---NRSSACRYLAAFCLV 161 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH----HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG---GTCHHHHHHHHHHHH
T ss_pred HHHHHHHHccCchHHHHHHHHHHh----hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc---ccchhHHHHHHHHHH
Confidence 456666677777777776665542 45676666665 888999999999999988653 678999999999999
Q ss_pred ccCChhHHHHHHHH-HHHC--------------CCCCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHH
Q 003913 192 KERKFAKCRDIFDD-IINQ--------------GRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSL 256 (787)
Q Consensus 192 ~~g~~~~A~~~f~~-m~~~--------------g~~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t 256 (787)
+.|++++|+++|++ ++.. |..++..+|+.++.+|. +.|++++|+++|++|.+. .|+...
T Consensus 162 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~---~p~~~~ 235 (597)
T 2xpi_A 162 KLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYT---NLSNFDRAKECYKEALMV---DAKCYE 235 (597)
T ss_dssp HTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH---CTTCHH
T ss_pred HHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh---CchhhH
Confidence 99999999999995 3332 23446899999999999 899999999999999985 355433
Q ss_pred -HHHHHHHHHcCCCCCChhhHHHHHHH-HHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHH
Q 003913 257 -HNSLFRALVSKPGGLSKYYLQQAEFI-FHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEV 334 (787)
Q Consensus 257 -~~~ll~~~~~~~~~~~~g~~~~A~~~-~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t 334 (787)
+..+...+... + .+....+..+ +..+...+..+...+|..++ ..|.+.|++++|.++|++|.+. .++..+
T Consensus 236 ~~~~l~~~~~~~-~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~A~~~~~~~~~~--~~~~~~ 307 (597)
T 2xpi_A 236 AFDQLVSNHLLT-A---DEEWDLVLKLNYSTYSKEDAAFLRSLYMLKL--NKTSHEDELRRAEDYLSSINGL--EKSSDL 307 (597)
T ss_dssp HHHHHHHTTCSC-H---HHHHHHHHHSCTHHHHGGGHHHHHHHHHTTS--CTTTTHHHHHHHHHHHHTSTTG--GGCHHH
T ss_pred HHHHHHHhhccc-c---hhHHHHHHhcCCcccccchHHHHHHHHHHHH--HHHcCcchHHHHHHHHHHhhcC--CchHHH
Confidence 33332222111 0 0111111111 33333333333333333333 5555556666666666655543 355566
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003913 335 LLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCK 414 (787)
Q Consensus 335 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 414 (787)
++.++.+|.+.|++++|.++|+++.+.++. +..+|+.++.+|.+.|++++|.++|++|.+. .+.+..+|+.++.+|.+
T Consensus 308 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~ 385 (597)
T 2xpi_A 308 LLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLC 385 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHH
Confidence 666666666666666666666666555432 4455566666666666666666666666543 22345556666666666
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003913 415 AEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIF 494 (787)
Q Consensus 415 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~ 494 (787)
.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+..+.+..+|+.++.+|.+.|++++|.++|
T Consensus 386 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 464 (597)
T 2xpi_A 386 VNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYL 464 (597)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 666666666666665532 2345566666666666666666666666665544455566666666666666666666666
Q ss_pred HHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC--CccCHHHHHHHHHHHhhcccccccccccCCchHHH
Q 003913 495 NHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKK--YEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQR 572 (787)
Q Consensus 495 ~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~ 572 (787)
++|.+.. +.+..+|+.++.+|.+.|++++|+++|++|.+.. .+.+|+. .
T Consensus 465 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~---------------------------~ 515 (597)
T 2xpi_A 465 QSSYALF--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP---------------------------W 515 (597)
T ss_dssp HHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGG---------------------------G
T ss_pred HHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhh---------------------------H
Confidence 6665543 3455566666666666666666666666665430 0112220 0
Q ss_pred HHHHHHHhhhhhhccchhhcceeEE--EEEccCCcccHHHHHHHHHHchhhcCCCccccCCCCCcce
Q 003913 573 ENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSFKVSDGNDDIPY 637 (787)
Q Consensus 573 ~~~~~~ll~~~~~~~~~~~a~~~~~--~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~p~ 637 (787)
..+|..++.+|...|++++|...++ +++.|+++..+..++.+|.+.|++++|...+.+..+..|.
T Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 516 AATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 3455555666666666666655555 4445555555666666666666666665555544444443
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.4e-36 Score=343.34 Aligned_cols=485 Identities=10% Similarity=0.001 Sum_probs=389.4
Q ss_pred cchHHHHH--HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHH
Q 003913 145 EDGTYLAV--HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILI 222 (787)
Q Consensus 145 ~~~t~~~~--~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li 222 (787)
+...+..+ .+.+.|++++|..+|+.|... .|+..++..++.+|.+.|++++|..+|+++... .++..+|+.++
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDI---TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhh---CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 44444444 678999999999999999964 567789999999999999999999999998543 56899999999
Q ss_pred HHHhcCCcCCCHHHHHHHHHHHHHhC--------------CCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHH
Q 003913 223 VAYLSAPVQGCLDEACSIYNRMIQLG--------------GYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLT 288 (787)
Q Consensus 223 ~~~~~~~~~g~~~~A~~l~~~m~~~~--------------g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~ 288 (787)
.+|+ +.|++++|+++|+++.... |..++..+|+.+..++.+. |++++|.++|++|.+
T Consensus 158 ~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~ 228 (597)
T 2xpi_A 158 FCLV---KLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNL------SNFDRAKECYKEALM 228 (597)
T ss_dssp HHHH---HTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHT------TCHHHHHHHHHHHHH
T ss_pred HHHH---HHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHc------CCHHHHHHHHHHHHH
Confidence 9999 8999999999999643221 2345688999999999987 799999999999998
Q ss_pred cCCccCHHHHHHHHHHhhhccCCCHH--HHHHH-HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 003913 289 SGLEIQKDIYSGLIWLHSYQDNIDKE--RISLL-KKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGI 365 (787)
Q Consensus 289 ~~~~p~~~~~~~li~~~~~~~~g~~~--~a~~l-~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 365 (787)
.+.. +...+..+. ..+...+..+ .+..+ +..+...+..+...+|+.++.+|.+.|++++|.++|+++.+. .+
T Consensus 229 ~~p~-~~~~~~~l~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~ 303 (597)
T 2xpi_A 229 VDAK-CYEAFDQLV--SNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EK 303 (597)
T ss_dssp HCTT-CHHHHHHHH--HTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GG
T ss_pred hCch-hhHHHHHHH--HhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--Cc
Confidence 7643 344555554 3333332222 22222 566666666667778888999999999999999999999876 46
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003913 366 PTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTN 445 (787)
Q Consensus 366 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~ 445 (787)
+..+|+.++.+|.+.|++++|.++|++|.+.+. .+..+|+.++.+|.+.|++++|..+++++.+.. +.+..+++.++.
T Consensus 304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 381 (597)
T 2xpi_A 304 SSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGI 381 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHH
Confidence 899999999999999999999999999998753 378899999999999999999999999999754 567899999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHH
Q 003913 446 MYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVK 525 (787)
Q Consensus 446 ~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~ 525 (787)
+|.+.|++++|.++|+++.+..+.+..+|+.++.+|.+.|++++|+++|++|.+.+ +.+..+|+.++.+|.+.|++++
T Consensus 382 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 459 (597)
T 2xpi_A 382 YYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF--QGTHLPYLFLGMQHMQLGNILL 459 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--TTCSHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999998667789999999999999999999999999999875 5689999999999999999999
Q ss_pred HHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhhhhccchhhcceeEEEEEccCC-
Q 003913 526 AEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIRFQFNENS- 604 (787)
Q Consensus 526 A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~p~~- 604 (787)
|.++|++|.+.. ..++..+..+..++.......+ -...+...+..... ...+|++
T Consensus 460 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~-----------A~~~~~~~~~~~~~------------~~~~p~~~ 515 (597)
T 2xpi_A 460 ANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQT-----------AINHFQNALLLVKK------------TQSNEKPW 515 (597)
T ss_dssp HHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH-----------HHHHHHHHHHHHHH------------SCCCSGGG
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHH-----------HHHHHHHHHHhhhc------------cccchhhH
Confidence 999999999743 2356665555554433221111 01222222222111 1234554
Q ss_pred cccHHHHHHHHHHchhhcCCCccccCCCCCcceEEeeeccchHHHHHHhhccCcccccccchhhcCChhHHHHH
Q 003913 605 RMHSVLRRYLYDQYHEWLHPSFKVSDGNDDIPYKYSTISHPYFCFYADKFWPKGRLVIPKLIHRWLTPRALAYW 678 (787)
Q Consensus 605 ~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~p~~~~t~~~~~~~~~~~g~~~~a~~~~~~mi~~gl~P~~lay~ 678 (787)
...+..++.+|.+.|++++|...+.+.....|....++...+..+...|.+++|.+.|.++++. .|+....+
T Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~ 587 (597)
T 2xpi_A 516 AATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI--SPNEIMAS 587 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCChHHH
Confidence 6688999999999999999999998777777876778888888999999999999999999885 66544333
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=3e-30 Score=285.16 Aligned_cols=216 Identities=11% Similarity=0.036 Sum_probs=179.5
Q ss_pred hHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhh
Q 003913 197 AKCRDIFDDIINQGRVPSE-MTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYY 275 (787)
Q Consensus 197 ~~A~~~f~~m~~~g~~pd~-~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~ 275 (787)
..+..+++++.++++.+.. ..++.+|.+|+ +.|++++|+++|++|.+. |+.||.+|||+||.+|++...
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~---k~G~~~~A~~lf~~M~~~-Gv~pd~~tyn~Li~~c~~~~~------ 76 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCS---KKGDVLEALRLYDEARRN-GVQLSQYHYNVLLYVCSLAEA------ 76 (501)
T ss_dssp -----------------CHHHHHHHHHHHTT---TSCCHHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHTTCCC------
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHc-CCCCCHhHHHHHHHHHHhCCc------
Confidence 4566777788877765543 46888999999 899999999999999987 899999999999999987421
Q ss_pred HHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003913 276 LQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTW 355 (787)
Q Consensus 276 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~ 355 (787)
. ....+.+..++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|
T Consensus 77 ~----------------------------~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~ 128 (501)
T 4g26_A 77 A----------------------------TESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMV 128 (501)
T ss_dssp C----------------------------SSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred h----------------------------hhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 0 122345557888899999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 003913 356 LRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKP 435 (787)
Q Consensus 356 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 435 (787)
++|.+.|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.+++++|++.|+.|
T Consensus 129 ~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~p 208 (501)
T 4g26_A 129 KQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQV 208 (501)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSB
T ss_pred HHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhc
Q 003913 436 LMPSYINLTNMYLNL 450 (787)
Q Consensus 436 ~~~t~~~li~~~~~~ 450 (787)
+..||+.++..|+..
T Consensus 209 s~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 209 SKSTFDMIEEWFKSE 223 (501)
T ss_dssp CHHHHHHHHHHHHSH
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999998864
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=2.2e-30 Score=286.20 Aligned_cols=204 Identities=14% Similarity=0.205 Sum_probs=149.5
Q ss_pred HHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC---------hHH
Q 003913 316 ISLLKKEMQQAGFEEGK-EVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGE---------FMK 385 (787)
Q Consensus 316 a~~l~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---------~~~ 385 (787)
+..+.+++.+.++.+.. .+++.+|++|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 34455556555555443 34666677777777777777777777777777777777777777766554 577
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003913 386 SLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE 465 (787)
Q Consensus 386 A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 465 (787)
|.++|++|...|+.||.+|||+||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888877
Q ss_pred -cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcC
Q 003913 466 -KCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSS 520 (787)
Q Consensus 466 -~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~ 520 (787)
|+.||..||++||.+|++.|++++|.++|++|.+.| +.|+..||+.++..|+..
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g-~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLV-RQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SSBCHHHHHHHHHHHHSH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhC-CCcCHHHHHHHHHHHhcC
Confidence 888888888888888888888888888888888888 788888888888888764
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=5e-24 Score=230.59 Aligned_cols=358 Identities=14% Similarity=0.070 Sum_probs=312.6
Q ss_pred HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCC
Q 003913 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQG 232 (787)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g 232 (787)
.+.+.|++++|.+.+..+.+.. +.+...+..+...+.+.|++++|...++...+.. +.+..+|..+...+. +.|
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~---~~g 81 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYK---ERG 81 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH---HHT
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHH---HCC
Confidence 4557899999999999998875 6677788888899999999999999999988764 347789999999999 899
Q ss_pred CHHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCC
Q 003913 233 CLDEACSIYNRMIQLGGYQPRP-SLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNI 311 (787)
Q Consensus 233 ~~~~A~~l~~~m~~~~g~~pd~-~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g 311 (787)
++++|++.|+++.+. .|+. .+|..+..++... |++++|...|+++++.++. +...+..+ ...+...|
T Consensus 82 ~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~------g~~~~A~~~~~~al~~~p~-~~~~~~~l--~~~~~~~g 149 (388)
T 1w3b_A 82 QLQEAIEHYRHALRL---KPDFIDGYINLAAALVAA------GDMEGAVQAYVSALQYNPD-LYCVRSDL--GNLLKALG 149 (388)
T ss_dssp CHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHH------SCSSHHHHHHHHHHHHCTT-CTHHHHHH--HHHHHTTS
T ss_pred CHHHHHHHHHHHHHc---CcchHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCC-cHHHHHHH--HHHHHHcc
Confidence 999999999999974 4654 4688888888776 6999999999999887643 12233333 37788889
Q ss_pred CHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 003913 312 DKERISLLKKEMQQAGFEE-GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIF 390 (787)
Q Consensus 312 ~~~~a~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 390 (787)
++++|.++|+++.+. .| +..+|..+...+.+.|++++|...|+++.+.++. +...|..+...+...|++++|...|
T Consensus 150 ~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~ 226 (388)
T 1w3b_A 150 RLEEAKACYLKAIET--QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAY 226 (388)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999885 34 5778999999999999999999999999998754 6788999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 003913 391 REMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPN 470 (787)
Q Consensus 391 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~ 470 (787)
++..... +-+..+|..+..+|...|++++|...++++.+.. +.+..+|..+..+|.+.|++++|...|+++.+..+.+
T Consensus 227 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 304 (388)
T 1w3b_A 227 LRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 304 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc
Confidence 9998763 2367899999999999999999999999999854 3457899999999999999999999999999977889
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 471 RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 471 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
..+|+.+...|.+.|++++|.+.|+++.+.. +.+..+|..+..+|.+.|++++|...|+++.+
T Consensus 305 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 305 ADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC--TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999874 56789999999999999999999999999996
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=1.8e-24 Score=234.13 Aligned_cols=379 Identities=14% Similarity=0.067 Sum_probs=324.4
Q ss_pred HHHHHHccCChhHHHHHHHHHHHCCCCCCH-hHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003913 186 LADYMGKERKFAKCRDIFDDIINQGRVPSE-MTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRAL 264 (787)
Q Consensus 186 li~~~~~~g~~~~A~~~f~~m~~~g~~pd~-~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~ 264 (787)
+...+.+.|++++|...++.+.+.. |+. ..+..+...+. +.|++++|...++...+. .+.+..+|..+...+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~---~~~~~~~a~~~~~~a~~~--~p~~~~~~~~lg~~~ 77 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHF---QCRRLDRSAHFSTLAIKQ--NPLLAEAYSNLGNVY 77 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHH
Confidence 3455678999999999999988763 544 45555555666 799999999999999885 355677888888888
Q ss_pred HcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 003913 265 VSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEG-KEVLLSVLRVCA 343 (787)
Q Consensus 265 ~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~t~~~li~~~~ 343 (787)
... |++++|...|+++++.... +...+..+. ..+...|++++|...|+++.+. .|+ ...+..+...+.
T Consensus 78 ~~~------g~~~~A~~~~~~al~~~p~-~~~~~~~l~--~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~ 146 (388)
T 1w3b_A 78 KER------GQLQEAIEHYRHALRLKPD-FIDGYINLA--AALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLK 146 (388)
T ss_dssp HHH------TCHHHHHHHHHHHHHHCTT-CHHHHHHHH--HHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHH
T ss_pred HHC------CCHHHHHHHHHHHHHcCcc-hHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHH
Confidence 876 7999999999999886532 344555555 7888999999999999999885 455 456777888899
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003913 344 KEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTES 423 (787)
Q Consensus 344 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ 423 (787)
..|++++|.+.|+++.+..+. +..+|+.+...|.+.|++++|...|+++.+... -+...|..+...+...|++++|..
T Consensus 147 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~ 224 (388)
T 1w3b_A 147 ALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVA 224 (388)
T ss_dssp TTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHH
T ss_pred HccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999987643 678999999999999999999999999998743 367789999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC
Q 003913 424 LMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTI 503 (787)
Q Consensus 424 l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 503 (787)
.+++..+.. +.+..++..+..+|.+.|++++|...|+++.+..+.+..+|..+...|.+.|++++|.+.|+++.+..
T Consensus 225 ~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-- 301 (388)
T 1w3b_A 225 AYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-- 301 (388)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--
Confidence 999998854 33588999999999999999999999999998667788999999999999999999999999999874
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhh
Q 003913 504 GVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGL 583 (787)
Q Consensus 504 ~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~ 583 (787)
+.+..+|+.+...+.+.|++++|+..|+++.+ ..|+. ..++..+...+
T Consensus 302 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~----~~p~~----------------------------~~~~~~l~~~~ 349 (388)
T 1w3b_A 302 PTHADSLNNLANIKREQGNIEEAVRLYRKALE----VFPEF----------------------------AAAHSNLASVL 349 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT----SCTTC----------------------------HHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCc----------------------------HHHHHHHHHHH
Confidence 67899999999999999999999999999986 45542 56788899999
Q ss_pred hhccchhhcceeEE--EEEccCCcccHHHHHHHHHHch
Q 003913 584 CIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYH 619 (787)
Q Consensus 584 ~~~~~~~~a~~~~~--~~~~p~~~~~~~~l~~~y~~~g 619 (787)
...|++++|...++ +++.|+++..+..++.+|...|
T Consensus 350 ~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 350 QQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 99999999999887 7788999999999999888765
No 7
>3c0w_A Intron-encoded endonuclease I-SCEI; endonuclease, homing, ladlidadg, catalytic mechanism, metal binding; HET: DNA; 2.20A {Saccharomyces cerevisiae} PDB: 1r7m_A* 3c0x_A* 3ool_A 3oor_A
Probab=99.91 E-value=4.1e-24 Score=205.10 Aligned_cols=187 Identities=28% Similarity=0.430 Sum_probs=146.0
Q ss_pred CCchHHHHHHHHHHhhhhhhccchhhcceeEEEEEccCCcccHHHHHHHHHHchhhcCCCcccc-----CCCCCcceEEe
Q 003913 566 NLSSEQRENLIGLLLGGLCIESDEKRKRHMIRFQFNENSRMHSVLRRYLYDQYHEWLHPSFKVS-----DGNDDIPYKYS 640 (787)
Q Consensus 566 ~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~-----~~~~~~p~~~~ 640 (787)
+++.++..++.+.||+.......-...-.-+.++.. ....+-++|.....+-...+... .+.......|+
T Consensus 28 ~Ls~~q~eiliG~LLGDg~l~~~~~~~~~R~~f~qs-----~~~Yl~~l~~~l~~~~~~~p~~~~~~~~~~k~~~~~~F~ 102 (235)
T 3c0w_A 28 ELNIEQFEAGIGLILGDAYIRSRDEGKTYCMQFEWK-----NKAYMDHVCLLYDQWVLSPPHKKERVNHLGNLVITWGAQ 102 (235)
T ss_dssp SCCHHHHHHHHHHHHTTCEEECSSTTSCBEEEEEES-----CHHHHHHHHHHTGGGCCSCCEEEEEECTTSCEEEEEEEE
T ss_pred cCCHHHHHHHeeeecCCCeEEecCCCCCEEEEEEcC-----CHHHHHHHHHHHHHHhCCCCceeeeeccCCceeeEEEEE
Confidence 466777899999999876554332211112234333 33445577888877766544431 12222345689
Q ss_pred eeccchHHHHHHhhccCccccccc-chhhcCChhHHHHHhhcCCccc-------CCCcEEEEccCCHHHHHHHHHHHhhC
Q 003913 641 TISHPYFCFYADKFWPKGRLVIPK-LIHRWLTPRALAYWFMYGGHRT-------SVGDILLKLKVSSEGIALVFKTLKAR 712 (787)
Q Consensus 641 t~~~~~~~~~~~g~~~~a~~~~~~-mi~~gl~P~~lay~~m~~g~~~-------~~g~~~~~~~g~~~e~~~l~~~l~~~ 712 (787)
|+.+++|.++++.||+++.|++|+ .++++++|.++|||+|+||++. ..|.++|+++++.+|++.|++.|..+
T Consensus 103 T~s~~~f~~l~~~FY~~~~K~IP~~~I~~~LTP~aLA~W~MDDGs~~~~~~~~~~~gi~L~T~sFt~~ev~~L~~~L~~k 182 (235)
T 3c0w_A 103 TFKHQAFNKLANLFIVNNKKTIPNNLVENYLTPMSLAYWFMDDGGKWDYNKNSTNKSIVLNTQSFTFEEVEYLVKGLRNK 182 (235)
T ss_dssp CCCBGGGHHHHHTTBSSSSBCCCTTHHHHHCCHHHHHHHHHHHEEESCCSTTCCCCCEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EeehHHHHHHHHhheeCCEEECCHHHHHHhcCHHHHHheEECCCccccccccCCCCcEEEEeCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999 9999999999999999999973 34555556655999999999999998
Q ss_pred -CCceEEEecCcEEEEEEeCCchHHHHHhccccccccccccccCCC
Q 003913 713 -SLDCRVKKKGRVFWIGFLGSNSTLFWKLIEPYVLDELKEDLLNEG 757 (787)
Q Consensus 713 -gl~~~~~~~~~~~~i~~~~~~~~~~~~lv~~~~~~~m~~k~~~~~ 757 (787)
||+|+|++++.+|+|||+++|+++|++||+|||+|||+||++.-+
T Consensus 183 f~L~~~i~~~~~~y~Iyi~~~s~~~f~~lI~PYi~psM~YKl~~~~ 228 (235)
T 3c0w_A 183 FQLNCYVKINKNKPIIYIDSMSYLIFYNLIKPYLIPQMMYKLPNTI 228 (235)
T ss_dssp HCCCEEEEEETTEEEEEECGGGHHHHHHHHGGGCCGGGGGGCC---
T ss_pred cCeEEEEEecCCEEEEEEeHHHHHHHHHHhhhhccHhHHhhcCCCC
Confidence 999999999999999999999999999999999999999997643
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=4.7e-21 Score=215.20 Aligned_cols=410 Identities=10% Similarity=0.024 Sum_probs=303.1
Q ss_pred HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCC
Q 003913 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQG 232 (787)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g 232 (787)
.+.+.|++++|...|+.+.+.. |+..++..+..+|.+.|++++|...|+++.+.+. .+..+|..+..++. +.|
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~---~~g 87 (514)
T 2gw1_A 15 QFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASANE---GLG 87 (514)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHH---HTT
T ss_pred HHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHHH---HHh
Confidence 5668899999999999999975 5899999999999999999999999999998753 25678999999999 899
Q ss_pred CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcC-------------------Ccc
Q 003913 233 CLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSG-------------------LEI 293 (787)
Q Consensus 233 ~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~-------------------~~p 293 (787)
++++|+..|+++.... +++......++..+... .....+.+.+..+...+ ..|
T Consensus 88 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (514)
T 2gw1_A 88 KFADAMFDLSVLSLNG--DFNDASIEPMLERNLNK------QAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLP 159 (514)
T ss_dssp CHHHHHHHHHHHHHSS--SCCGGGTHHHHHHHHHH------HHHHHHTTC---------------------------CCC
T ss_pred hHHHHHHHHHHHHhcC--CCccchHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCc
Confidence 9999999999999852 34444444444444332 12222222221111110 001
Q ss_pred CH-----------------------HHHHHHHHHhhh---ccCCCHHHHHHHHHHHHH-----cCCCC--------CHHH
Q 003913 294 QK-----------------------DIYSGLIWLHSY---QDNIDKERISLLKKEMQQ-----AGFEE--------GKEV 334 (787)
Q Consensus 294 ~~-----------------------~~~~~li~~~~~---~~~g~~~~a~~l~~~m~~-----~g~~p--------~~~t 334 (787)
.. .....+..+..+ .+.|++++|..+|+++.+ ..-.| +..+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (514)
T 2gw1_A 160 SVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAIS 239 (514)
T ss_dssp CHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHH
T ss_pred hhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHH
Confidence 00 122222222222 247889999999988877 31122 3456
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003913 335 LLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCK 414 (787)
Q Consensus 335 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 414 (787)
+..+...+...|++++|...++++.+.... ..++..+...|...|++++|...|+++.... +.+..+|..+...+..
T Consensus 240 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 316 (514)
T 2gw1_A 240 LEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFI 316 (514)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHH
Confidence 778888888999999999999988887654 7788888889999999999999999888753 3366788888888999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003913 415 AEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIF 494 (787)
Q Consensus 415 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~ 494 (787)
.|++++|...++++.+.. +.+..++..+...|...|++++|...++.+.+..+.+..+|..+...|.+.|++++|...|
T Consensus 317 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 317 LQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp TTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999888754 3356788888888999999999999999888766667788888899999999999999999
Q ss_pred HHhhhCCCCCCC----HHHHHHHHHHHHc---CCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCC
Q 003913 495 NHMHSDQTIGVN----TRSCNIILSAYLS---SGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNL 567 (787)
Q Consensus 495 ~~m~~~~~~~p~----~~t~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l 567 (787)
+++.+...-.++ ..+|..+...|.. .|++++|...|+++.+ .+|+.
T Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~----~~~~~----------------------- 448 (514)
T 2gw1_A 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK----LDPRS----------------------- 448 (514)
T ss_dssp HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH----HCTTC-----------------------
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH----hCccc-----------------------
Confidence 888765311111 3488888888888 8999999999998886 34431
Q ss_pred chHHHHHHHHHHhhhhhhccchhhcceeEE--EEEccCCcccHHHHHH
Q 003913 568 SSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRY 613 (787)
Q Consensus 568 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--~~~~p~~~~~~~~l~~ 613 (787)
..++..+...+...|+.+.|...++ +.+.|++......+..
T Consensus 449 -----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 491 (514)
T 2gw1_A 449 -----EQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITF 491 (514)
T ss_dssp -----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 4567777788888888888888877 6777877666655533
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.88 E-value=2.3e-19 Score=197.84 Aligned_cols=318 Identities=15% Similarity=0.059 Sum_probs=195.6
Q ss_pred ccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHH
Q 003913 177 RFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSL 256 (787)
Q Consensus 177 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t 256 (787)
+.+...+..+...|.+.|++++|+.+|+++.+... .+..+|..+..++. +.|++++|+..|+++.+.. +.+...
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~~--p~~~~~ 96 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFL---AMGKSKAALPDLTKVIQLK--MDFTAA 96 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHC--TTCHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHH---HCCCHHHHHHHHHHHHhcC--CCcHHH
Confidence 44556666666666666666666666666665421 24566666666666 5666666666666666541 223445
Q ss_pred HHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCH---HHHHHHH----------HHhhhccCCCHHHHHHHHHHH
Q 003913 257 HNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQK---DIYSGLI----------WLHSYQDNIDKERISLLKKEM 323 (787)
Q Consensus 257 ~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li----------~~~~~~~~g~~~~a~~l~~~m 323 (787)
+..+...+... |++++|...|+++.+.+.. +. ..+..+. .+..+...|++++|...|+++
T Consensus 97 ~~~l~~~~~~~------g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 169 (450)
T 2y4t_A 97 RLQRGHLLLKQ------GKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKI 169 (450)
T ss_dssp HHHHHHHHHHT------TCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHc------CCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555554 4666666666666654422 11 2222221 123455667777777777777
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH
Q 003913 324 QQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVP 403 (787)
Q Consensus 324 ~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 403 (787)
.+.. +.+..++..+..+|.+.|++++|.++|+++.+... .+..+|..+..+|.+.|++++|...|+++.... +.+..
T Consensus 170 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~ 246 (450)
T 2y4t_A 170 LEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKR 246 (450)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHH
Confidence 6642 23566677777777777777777777777766543 256677777777777777777777777776542 12333
Q ss_pred HHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 003913 404 AYHKI------------IELLCKAEETELTESLMKEFVETGMKPL-----MPSYINLTNMYLNLGMHDRLHLAFSECLEK 466 (787)
Q Consensus 404 t~~~l------------i~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 466 (787)
.+..+ ...|...|++++|..+|+++.+. .|+ ..++..+..++.+.|++++|...++.+.+.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 324 (450)
T 2y4t_A 247 CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM 324 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 44433 56667777777777777777663 233 345666677777777777777777776664
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHH
Q 003913 467 CRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIIL 514 (787)
Q Consensus 467 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li 514 (787)
.+.+..+|..+..+|...|++++|...|+++.+.. +-+...+..+.
T Consensus 325 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~ 370 (450)
T 2y4t_A 325 EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN--ENDQQIREGLE 370 (450)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--cchHHHHHHHH
Confidence 45566777777777777777777777777776653 33445555554
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.87 E-value=2e-19 Score=198.45 Aligned_cols=301 Identities=12% Similarity=0.019 Sum_probs=255.1
Q ss_pred CHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCcc
Q 003913 214 SEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEI 293 (787)
Q Consensus 214 d~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p 293 (787)
+...|..+...+. +.|++++|+.+|+++.+. .+.+..++..+..++... |++++|...|+++++.+..
T Consensus 25 ~~~~~~~~~~~~~---~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~------g~~~~A~~~~~~al~~~p~- 92 (450)
T 2y4t_A 25 DVEKHLELGKKLL---AAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAM------GKSKAALPDLTKVIQLKMD- 92 (450)
T ss_dssp HHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHC------CCHHHHHHHHHHHHhcCCC-
Confidence 6778999999999 899999999999999985 345677888888888776 6999999999999987743
Q ss_pred CHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCH----HHHHHH------------HHHHHhcCChHHHHHHHHH
Q 003913 294 QKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGK----EVLLSV------------LRVCAKEGDVEDAEKTWLR 357 (787)
Q Consensus 294 ~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~----~t~~~l------------i~~~~~~g~~~~A~~~~~~ 357 (787)
+...+..+. ..+...|++++|...|+++.+. .|+. .++..+ ...+.+.|++++|...+++
T Consensus 93 ~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 168 (450)
T 2y4t_A 93 FTAARLQRG--HLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDK 168 (450)
T ss_dssp CHHHHHHHH--HHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cHHHHHHHH--HHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344555544 8888999999999999999874 5554 455555 3448899999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 003913 358 LLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLM 437 (787)
Q Consensus 358 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 437 (787)
+.+..+. +..++..+..+|.+.|++++|.+.|+++.+.. +.+..+|..+...|...|++++|...|+++.+.. +.+.
T Consensus 169 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~ 245 (450)
T 2y4t_A 169 ILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHK 245 (450)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChH
Confidence 9987643 78899999999999999999999999998763 3478899999999999999999999999999753 3344
Q ss_pred HHHHHH------------HHHHHhcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 003913 438 PSYINL------------TNMYLNLGMHDRLHLAFSECLEKCRPN----RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ 501 (787)
Q Consensus 438 ~t~~~l------------i~~~~~~g~~~~a~~~~~~m~~~~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 501 (787)
..+..+ ..+|.+.|++++|...|+.+.+..+.+ ..+|..+...|.+.|++++|+..++++.+..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 325 (450)
T 2y4t_A 246 RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME 325 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 555444 889999999999999999998843334 4588999999999999999999999998864
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 502 TIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 502 ~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
+.+..+|..+..+|...|++++|...|+++.+
T Consensus 326 --p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 326 --PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred --cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 55789999999999999999999999999996
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.87 E-value=9e-21 Score=212.89 Aligned_cols=411 Identities=11% Similarity=0.023 Sum_probs=317.9
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHH
Q 003913 180 FALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNS 259 (787)
Q Consensus 180 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ 259 (787)
...+..+...+.+.|++++|+..|+++.+.+ ||..+|..+..++. +.|++++|+..|+++.+.. +.+...+..
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~--p~~~~~~~~ 78 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYV---SVGDLKKVVEMSTKALELK--PDYSKVLLR 78 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHHC--SCCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHH---HHhhHHHHHHHHHHHhccC--hHHHHHHHH
Confidence 4456677788999999999999999999875 79999999999999 8999999999999999852 334557777
Q ss_pred HHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcC------------
Q 003913 260 LFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAG------------ 327 (787)
Q Consensus 260 ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g------------ 327 (787)
+..++... |++++|...|+.+...+...+... ..++ ...........+.+.+..+...+
T Consensus 79 l~~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 149 (514)
T 2gw1_A 79 RASANEGL------GKFADAMFDLSVLSLNGDFNDASI-EPML--ERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAK 149 (514)
T ss_dssp HHHHHHHT------TCHHHHHHHHHHHHHSSSCCGGGT-HHHH--HHHHHHHHHHHHTTC--------------------
T ss_pred HHHHHHHH------hhHHHHHHHHHHHHhcCCCccchH-HHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhh
Confidence 77788776 699999999999998875332222 2111 11111101111111111110000
Q ss_pred -------CC------------------------CC-HHHHHHHHHHHHh---cCChHHHHHHHHHHHh-----CCCC---
Q 003913 328 -------FE------------------------EG-KEVLLSVLRVCAK---EGDVEDAEKTWLRLLE-----SDNG--- 364 (787)
Q Consensus 328 -------~~------------------------p~-~~t~~~li~~~~~---~g~~~~A~~~~~~m~~-----~~~~--- 364 (787)
.. |+ ...+......+.. .|++++|..+++++.+ ..-.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 229 (514)
T 2gw1_A 150 ERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNED 229 (514)
T ss_dssp -------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTC
T ss_pred HHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccc
Confidence 00 11 3344444444444 8999999999999988 4111
Q ss_pred -----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 003913 365 -----IPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPS 439 (787)
Q Consensus 365 -----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 439 (787)
.+..++..+...|...|++++|...|+++.+.. |+..+|..+...+...|++++|...++++.+.. +.+..+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 306 (514)
T 2gw1_A 230 EKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSV 306 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHH
T ss_pred cccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHH
Confidence 135677888999999999999999999998874 348889999999999999999999999999854 446789
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHc
Q 003913 440 YINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS 519 (787)
Q Consensus 440 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~ 519 (787)
+..+...|...|++++|...|+.+.+..+.+..++..+...|.+.|++++|..+|+++.+.. +.+..+|..+...|.+
T Consensus 307 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~ 384 (514)
T 2gw1_A 307 YYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTD 384 (514)
T ss_dssp HHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHH
Confidence 99999999999999999999999998667788899999999999999999999999999874 4577899999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhhhh---ccchhhcceeE
Q 003913 520 SGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCI---ESDEKRKRHMI 596 (787)
Q Consensus 520 ~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~---~~~~~~a~~~~ 596 (787)
.|++++|...|+++.+ ..|+. .... ....+|..+...+.. .|+++.|...+
T Consensus 385 ~~~~~~A~~~~~~a~~----~~~~~--------------------~~~~--~~~~~~~~l~~~~~~~~~~~~~~~A~~~~ 438 (514)
T 2gw1_A 385 KNDFDKALKQYDLAIE----LENKL--------------------DGIY--VGIAPLVGKATLLTRNPTVENFIEATNLL 438 (514)
T ss_dssp TTCHHHHHHHHHHHHH----HHHTS--------------------SSCS--SCSHHHHHHHHHHHTSCCTTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH----hhhcc--------------------chHH--HHHHHHHHHHHHHhhhhhcCCHHHHHHHH
Confidence 9999999999999986 33331 0000 002378888888888 89999999888
Q ss_pred E--EEEccCCcccHHHHHHHHHHchhhcCCCccccCCCCCcce
Q 003913 597 R--FQFNENSRMHSVLRRYLYDQYHEWLHPSFKVSDGNDDIPY 637 (787)
Q Consensus 597 ~--~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~p~ 637 (787)
+ +...|+++..+..++.+|...|++++|...+.+.....|.
T Consensus 439 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 439 EKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence 7 6778999999999999999999999998888777666665
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.83 E-value=5.5e-19 Score=199.63 Aligned_cols=428 Identities=11% Similarity=0.057 Sum_probs=317.4
Q ss_pred HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCC
Q 003913 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQG 232 (787)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g 232 (787)
.+.+.|++++|...|+.+.+.. +.+..++..+..+|.+.|++++|++.|++..+.+. .+..+|..+...+. +.|
T Consensus 34 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~---~~g 107 (537)
T 3fp2_A 34 HFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASANE---SLG 107 (537)
T ss_dssp HHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH---HHT
T ss_pred HHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHH---HcC
Confidence 7778999999999999999986 66889999999999999999999999999988653 26778888888888 799
Q ss_pred CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHc------CCccCHHHHHHHHHHhh
Q 003913 233 CLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTS------GLEIQKDIYSGLIWLHS 306 (787)
Q Consensus 233 ~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~------~~~p~~~~~~~li~~~~ 306 (787)
++++|+..|+.+ . ..|+.... .+..+... +...+|...++.+... ...|+........
T Consensus 108 ~~~~A~~~~~~~-~---~~~~~~~~--~~~~~~~~------~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---- 171 (537)
T 3fp2_A 108 NFTDAMFDLSVL-S---LNGDFDGA--SIEPMLER------NLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFF---- 171 (537)
T ss_dssp CHHHHHHHHHHH-C----------------CHHHH------HHHHHHHHHHHHHCC-------CCCCCHHHHHHHH----
T ss_pred CHHHHHHHHHHH-h---cCCCCChH--HHHHHHHH------HHHHHHHHHHHHHHHhCccccccccchHhHHHHHH----
Confidence 999999999633 2 34443322 22233332 4678899999888553 2334444433322
Q ss_pred hccCCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHH--------hcCChHHHHHHHHHHHhCCCCCC------HHHHH
Q 003913 307 YQDNIDKERISLLKKEMQQAGFEEGKEV-LLSVLRVCA--------KEGDVEDAEKTWLRLLESDNGIP------TPAFV 371 (787)
Q Consensus 307 ~~~~g~~~~a~~l~~~m~~~g~~p~~~t-~~~li~~~~--------~~g~~~~A~~~~~~m~~~~~~~~------~~~~~ 371 (787)
...+.+.+...+..... ..+.... ...+...+. ..|++++|..+++++.+..+... ..++.
T Consensus 172 --~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~ 247 (537)
T 3fp2_A 172 --GIFDSHLEVSSVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALC 247 (537)
T ss_dssp --HTSCHHHHHHTSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHH
T ss_pred --HhcChHHHHHHHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHH
Confidence 33444444433322211 2222222 222222222 23589999999999998764311 23566
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003913 372 YKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLG 451 (787)
Q Consensus 372 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g 451 (787)
.+...+...|++++|...|++..+. .|+..+|..+...+...|++++|...++++.+.. +.+..++..+...|...|
T Consensus 248 ~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 324 (537)
T 3fp2_A 248 YTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQ 324 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcC
Confidence 7778899999999999999999986 4668889999999999999999999999999864 456889999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 003913 452 MHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYD 531 (787)
Q Consensus 452 ~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~ 531 (787)
++++|...|+++.+..+.+..+|..+...|.+.|++++|.+.|+++.+.. +.+...|..+...|...|++++|...|+
T Consensus 325 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 402 (537)
T 3fp2_A 325 DYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQYD 402 (537)
T ss_dssp CHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 99999999999998666778999999999999999999999999999874 5677899999999999999999999999
Q ss_pred HHHHcCCccCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhhhhc----------cchhhcceeEE--EE
Q 003913 532 LMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIE----------SDEKRKRHMIR--FQ 599 (787)
Q Consensus 532 ~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~----------~~~~~a~~~~~--~~ 599 (787)
++.+ ..|+. ..... ....+..+...+... |+++.|...++ +.
T Consensus 403 ~a~~----~~~~~--------------------~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 456 (537)
T 3fp2_A 403 IAKR----LEEVQ--------------------EKIHV--GIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE 456 (537)
T ss_dssp HHHH----HHHHC--------------------SSCSS--TTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHH----cCCcc--------------------hhhHH--HHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH
Confidence 9987 34431 00000 012233444455555 88889988887 77
Q ss_pred EccCCcccHHHHHHHHHHchhhcCCCccccCCCCCcce
Q 003913 600 FNENSRMHSVLRRYLYDQYHEWLHPSFKVSDGNDDIPY 637 (787)
Q Consensus 600 ~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~p~ 637 (787)
..|++...+..++.+|...|++++|...+.+.....|.
T Consensus 457 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 457 LDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 78999999999999999999999998888766665554
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.83 E-value=2e-17 Score=186.73 Aligned_cols=394 Identities=10% Similarity=0.013 Sum_probs=292.6
Q ss_pred hccCCCcchhhHHHHHHhhccccCCcch-HHHHH--HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCCh
Q 003913 120 CKELPSHKGGTLVRILNAQKKWLRQEDG-TYLAV--HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKF 196 (787)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~~~~~~~p~~~-t~~~~--~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~ 196 (787)
...+....+...++..... .|+.. .+..+ ++.+.|++++|.+.++.+.+.. +.+..++..+...+.+.|++
T Consensus 36 ~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~ 109 (537)
T 3fp2_A 36 FTAKNFNEAIKYYQYAIEL----DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRASANESLGNF 109 (537)
T ss_dssp HHTTCCC-CHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCH
T ss_pred HHhccHHHHHHHHHHHHhh----CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHcCCH
Confidence 3555566666655554432 34333 33333 7778999999999999999986 66888999999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHh-----CCCCCCHHHH--------------
Q 003913 197 AKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQL-----GGYQPRPSLH-------------- 257 (787)
Q Consensus 197 ~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~-----~g~~pd~~t~-------------- 257 (787)
++|...|+.+ .. .|+ ..+..+..+. ..+...+|+..++++... ....|+....
T Consensus 110 ~~A~~~~~~~-~~--~~~--~~~~~~~~~~---~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 110 TDAMFDLSVL-SL--NGD--FDGASIEPML---ERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHHHHHHHH-C---------------CHH---HHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHH-hc--CCC--CChHHHHHHH---HHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 9999999744 22 233 2233344444 456678899999888542 0122333222
Q ss_pred ---------------HHHHHHHHcCCC-C--CChhhHHHHHHHHHHHHHcCCccCHHH-----HHHHHHHhhhccCCCHH
Q 003913 258 ---------------NSLFRALVSKPG-G--LSKYYLQQAEFIFHNLLTSGLEIQKDI-----YSGLIWLHSYQDNIDKE 314 (787)
Q Consensus 258 ---------------~~ll~~~~~~~~-~--~~~g~~~~A~~~~~~m~~~~~~p~~~~-----~~~li~~~~~~~~g~~~ 314 (787)
...+..+....+ . ...|++++|..+++++.+..... ... ......+..+...|+++
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~-~~~~~~~~~~~~~~g~~~~~~~~~~ 260 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVD-DPLRENAALALCYTGIFHFLKNNLL 260 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCC-HHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCc-chhhHHHHHHHHHHHHHHHhcccHH
Confidence 222222211110 0 00147889999999998766432 221 12333446778899999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003913 315 RISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQ 394 (787)
Q Consensus 315 ~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 394 (787)
+|...|++..+. .|+..++..+...+...|++++|.+.++++.+.... +..+|..+...|...|++++|...|++..
T Consensus 261 ~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 337 (537)
T 3fp2_A 261 DAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337 (537)
T ss_dssp HHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 999999999885 567888999999999999999999999999987654 68889999999999999999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CC
Q 003913 395 ERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEK------CR 468 (787)
Q Consensus 395 ~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~------~~ 468 (787)
+... .+...|..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|...|+.+.+. ..
T Consensus 338 ~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 415 (537)
T 3fp2_A 338 SLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIH 415 (537)
T ss_dssp HHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCS
T ss_pred HhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhH
Confidence 8643 256789999999999999999999999999864 445789999999999999999999999998761 11
Q ss_pred CCHHHHHHHHHHHHhc----------CCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 469 PNRTIYGIYLESLKNA----------GNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 469 p~~~~~~~li~~~~~~----------g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
.....+..+...|.+. |++++|...|+++.+.. +.+..+|..+...|.+.|++++|.+.|++..+
T Consensus 416 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 416 VGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD--PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp STTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 2233455666778888 99999999999999875 56789999999999999999999999999997
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.79 E-value=1.6e-15 Score=161.10 Aligned_cols=316 Identities=12% Similarity=0.012 Sum_probs=149.9
Q ss_pred HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCC
Q 003913 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQG 232 (787)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g 232 (787)
.+...|++++|...|+.+.+.. +.+..++..+...+...|++++|...|++..+.... +...|..+...+. +.|
T Consensus 12 ~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~---~~~ 85 (359)
T 3ieg_A 12 KLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHLLL---KQG 85 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH---HHT
T ss_pred HHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHHHH---HcC
Confidence 3445555555555555555543 334455555555555555555555555555543211 3344555555555 455
Q ss_pred CHHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhcc
Q 003913 233 CLDEACSIYNRMIQLGGYQP---RPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQD 309 (787)
Q Consensus 233 ~~~~A~~l~~~m~~~~g~~p---d~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 309 (787)
++++|+..|+++.+ ..| +.......+. .+..+.. ....+..+..
T Consensus 86 ~~~~A~~~~~~~~~---~~~~~~~~~~~~~~l~------------~~~~~~~------------------~~~~a~~~~~ 132 (359)
T 3ieg_A 86 KLDEAEDDFKKVLK---SNPSEQEEKEAESQLV------------KADEMQR------------------LRSQALDAFD 132 (359)
T ss_dssp CHHHHHHHHHHHHT---SCCCHHHHHHHHHHHH------------HHHHHHH------------------HHHHHHHHHH
T ss_pred ChHHHHHHHHHHHh---cCCcccChHHHHHHHH------------HHHHHHH------------------HHHHHHHHHH
Confidence 55555555555554 234 1111110000 0100000 0111234445
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 003913 310 NIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEI 389 (787)
Q Consensus 310 ~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 389 (787)
.|++++|..+++++.+.. +.+..++..+...+...|++++|...++++.+..+. +..++..+...|...|++++|...
T Consensus 133 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~ 210 (359)
T 3ieg_A 133 GADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSE 210 (359)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 556666666666655532 224455555556666666666666666665555432 455555566666666666666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 003913 390 FREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRP 469 (787)
Q Consensus 390 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p 469 (787)
|++..+... .+...+..+... . .......+...+.+.|++++|...++.+.+..+.
T Consensus 211 ~~~a~~~~~-~~~~~~~~~~~~-----------------~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 266 (359)
T 3ieg_A 211 VRECLKLDQ-DHKRCFAHYKQV-----------------K------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS 266 (359)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHH-----------------H------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS
T ss_pred HHHHHhhCc-cchHHHHHHHHH-----------------H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 665554321 122222111000 0 0001112234455555555555555555542222
Q ss_pred CHH----HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 470 NRT----IYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 470 ~~~----~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
+.. .|..+...|.+.|++++|.+.|++..+.. +.+..+|..+...|.+.|++++|...|++..+
T Consensus 267 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 267 VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME--PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 321 23344555555555555555555555542 33455555555555555555555555555554
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.78 E-value=1.2e-15 Score=161.95 Aligned_cols=294 Identities=16% Similarity=0.111 Sum_probs=161.0
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCC-CHHHHH
Q 003913 180 FALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQP-RPSLHN 258 (787)
Q Consensus 180 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~p-d~~t~~ 258 (787)
+..+..+...+.+.|++++|...|+++.+... .+..+|..+...+. ..|++++|+..|+++.+. .| +...+.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~---~~~~~~~A~~~~~~~~~~---~~~~~~~~~ 75 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFL---AMGKSKAALPDLTKVIAL---KMDFTAARL 75 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHH---CTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHH---HccCHHHHHHHHHHHHHh---CCCcchHHH
Confidence 34555666666677777777777777666532 24556666666666 567777777777766653 23 334444
Q ss_pred HHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCcc--CHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003913 259 SLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEI--QKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLL 336 (787)
Q Consensus 259 ~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~ 336 (787)
.+...+... |++++|...|+++.+..... +...+..+.. ... ...+.
T Consensus 76 ~l~~~~~~~------~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~---------~~~----------------~~~~~ 124 (359)
T 3ieg_A 76 QRGHLLLKQ------GKLDEAEDDFKKVLKSNPSEQEEKEAESQLVK---------ADE----------------MQRLR 124 (359)
T ss_dssp HHHHHHHHH------TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHH---------HHH----------------HHHHH
T ss_pred HHHHHHHHc------CChHHHHHHHHHHHhcCCcccChHHHHHHHHH---------HHH----------------HHHHH
Confidence 444444443 46666666666665443210 0111111100 000 01122
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003913 337 SVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAE 416 (787)
Q Consensus 337 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 416 (787)
.+...+...|++++|.+.++++.+..+ .+...+..+...+...|
T Consensus 125 ~~a~~~~~~~~~~~A~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~ 168 (359)
T 3ieg_A 125 SQALDAFDGADYTAAITFLDKILEVCV------------------------------------WDAELRELRAECFIKEG 168 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT------------------------------------TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCC------------------------------------CchHHHHHHHHHHHHCC
Confidence 233344445555555555554444432 23344444444444445
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHH------------HHHHHHHhc
Q 003913 417 ETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYG------------IYLESLKNA 484 (787)
Q Consensus 417 ~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~------------~li~~~~~~ 484 (787)
++++|...++++.+.. +.+..++..+...|...|++++|...|+...+..+.+..++. .+...+.+.
T Consensus 169 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 247 (359)
T 3ieg_A 169 EPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRD 247 (359)
T ss_dssp CHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5555555544444432 223444555555555555555555555555443333333332 346778999
Q ss_pred CCHHHHHHHHHHhhhCCCCCCCH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHH
Q 003913 485 GNIEKAEEIFNHMHSDQTIGVNT----RSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYV 551 (787)
Q Consensus 485 g~~~~A~~l~~~m~~~~~~~p~~----~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~ 551 (787)
|++++|.+.++++.+.. +.+. ..|..+...|.+.|++++|+..|++..+.. +-++..+..+..+
T Consensus 248 ~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 315 (359)
T 3ieg_A 248 GRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEA 315 (359)
T ss_dssp TCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 99999999999999864 2333 345668889999999999999999999742 2244444444443
No 16
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.77 E-value=1.6e-19 Score=203.85 Aligned_cols=162 Identities=10% Similarity=0.126 Sum_probs=134.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003913 331 GKEVLLSVLRVCAKEGDVEDAEKTWLRLLE---SDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHK 407 (787)
Q Consensus 331 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 407 (787)
-..||++||++||+.|++++|.++|++|.+ .|+.||++|||+||++||+.|++++|.++|++|.+.|+.||++|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 467999999999999999999999988764 48899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHH
Q 003913 408 IIELLCKAEET-ELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPN------RTIYGIYLES 480 (787)
Q Consensus 408 li~~~~~~g~~-~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~------~~~~~~li~~ 480 (787)
||.++|+.|+. ++|.++|++|.+.|+.||..||++++.++.+.+-++.+.+ +..+..|+ +.+...|.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrk----v~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHK----VKPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGG----GCCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHH----hCcccCCCCCCcccccchHHHHHH
Confidence 99999999985 7899999999999999999999999988877654444433 32233333 5566667777
Q ss_pred HHhcC---------CHHHHHHHHHH
Q 003913 481 LKNAG---------NIEKAEEIFNH 496 (787)
Q Consensus 481 ~~~~g---------~~~~A~~l~~~ 496 (787)
|.+.+ ..++-.++|++
T Consensus 282 ~s~d~~~s~pk~~~~~~~L~~~~~~ 306 (1134)
T 3spa_A 282 YAKDGRVSYPKLHLPLKTLQCLFEK 306 (1134)
T ss_dssp HCCCSCCCCCCCSSCHHHHHHHHHH
T ss_pred HccCCCCcCccccCCHHHHHHHHHH
Confidence 87665 24555555554
No 17
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.76 E-value=5.8e-19 Score=199.26 Aligned_cols=150 Identities=6% Similarity=0.092 Sum_probs=128.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHH---HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003913 366 PTPAFVYKMEAYAKIGEFMKSLEIFREMQ---ERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYIN 442 (787)
Q Consensus 366 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 442 (787)
-..+||+||++||++|++++|.++|++|. .+|+.||++|||+||.+||+.|++++|.++|++|.+.|+.||.+||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 45799999999999999999999998876 468999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC------HHHHHHHH
Q 003913 443 LTNMYLNLGM-HDRLHLAFSECLE-KCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVN------TRSCNIIL 514 (787)
Q Consensus 443 li~~~~~~g~-~~~a~~~~~~m~~-~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~------~~t~~~li 514 (787)
||+++|+.|+ .++|.++|++|.+ |+.||..+|++++.++.+.+ +++..+++.. + +.|+ ..+...|.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv~P-~-f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKVKP-T-FSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGGCC-C-CCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHhCc-c-cCCCCCCcccccchHHHH
Confidence 9999999998 5889999999998 99999999999998887754 4444444422 2 3443 45566667
Q ss_pred HHHHcCC
Q 003913 515 SAYLSSG 521 (787)
Q Consensus 515 ~~~~~~g 521 (787)
+.|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 7777665
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.74 E-value=1.3e-16 Score=167.52 Aligned_cols=280 Identities=8% Similarity=-0.059 Sum_probs=225.1
Q ss_pred hhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-Ch
Q 003913 305 HSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIG-EF 383 (787)
Q Consensus 305 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~ 383 (787)
..+...|++++|..+|+++.+.. +.+..++..++.++...|++++|..+++++.+..+. +..+|..+...|...| ++
T Consensus 30 ~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 107 (330)
T 3hym_B 30 ERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVGCYYLMVGHKN 107 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHHHHHHHSCSCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhhhhH
Confidence 56667789999999999888753 224456667778888999999999999998887643 5778888899999999 89
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003913 384 MKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSEC 463 (787)
Q Consensus 384 ~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m 463 (787)
++|...|++..+.. +.+...|..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|...++.+
T Consensus 108 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 185 (330)
T 3hym_B 108 EHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQA 185 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999988763 2356778889999999999999999999988854 334667777889999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-------CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 003913 464 LEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQT-------IGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLK 536 (787)
Q Consensus 464 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~-------~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (787)
.+..+.+..++..+...|.+.|++++|...|+++.+... .+.+..+|..+...|.+.|++++|+..|++..+
T Consensus 186 l~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~- 264 (330)
T 3hym_B 186 LSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALV- 264 (330)
T ss_dssp HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-
Confidence 887777888999999999999999999999998876310 133467888999999999999999999999886
Q ss_pred CCccCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhhhhccchhhcceeEE--EEEccCCcccHHHHHHH
Q 003913 537 KYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYL 614 (787)
Q Consensus 537 g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--~~~~p~~~~~~~~l~~~ 614 (787)
..|+. ..+|..+...+...|+.+.|...++ +.++|+++..+..++.+
T Consensus 265 ---~~~~~----------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 313 (330)
T 3hym_B 265 ---LIPQN----------------------------ASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHC 313 (330)
T ss_dssp ---HSTTC----------------------------SHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHH
T ss_pred ---hCccc----------------------------hHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHH
Confidence 34431 4667788888888888888888887 77788888888888887
Q ss_pred HH-Hchh
Q 003913 615 YD-QYHE 620 (787)
Q Consensus 615 y~-~~g~ 620 (787)
+. ..|+
T Consensus 314 ~~~~~g~ 320 (330)
T 3hym_B 314 IEMYIGD 320 (330)
T ss_dssp HHTTTTC
T ss_pred HHHHhCc
Confidence 74 4443
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.73 E-value=3.3e-15 Score=156.68 Aligned_cols=291 Identities=12% Similarity=0.018 Sum_probs=180.1
Q ss_pred CHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCcc
Q 003913 214 SEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEI 293 (787)
Q Consensus 214 d~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p 293 (787)
+...+..+...+. ..|++++|+++|+++.+.. +.+...+..+...+... |++++|..+++++.+....
T Consensus 21 ~~~~~~~~a~~~~---~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~------~~~~~A~~~~~~~~~~~~~- 88 (330)
T 3hym_B 21 NLDVVVSLAERHY---YNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVEL------NKANELFYLSHKLVDLYPS- 88 (330)
T ss_dssp CCTTHHHHHHHHH---HTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHH------TCHHHHHHHHHHHHHHCTT-
T ss_pred hHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHh------hhHHHHHHHHHHHHHhCcC-
Confidence 3344444444444 4555555555555555431 11222222333333332 3555555555555543321
Q ss_pred CHHHHHHHHHHhhhccCC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 003913 294 QKDIYSGLIWLHSYQDNI-DKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVY 372 (787)
Q Consensus 294 ~~~~~~~li~~~~~~~~g-~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 372 (787)
+...+..+. ..+...| ++++|...|++..+.. +.+...+..+...+...|++++|.+.++++.+.... +...+..
T Consensus 89 ~~~~~~~l~--~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~ 164 (330)
T 3hym_B 89 NPVSWFAVG--CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLY 164 (330)
T ss_dssp STHHHHHHH--HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHH
T ss_pred CHHHHHHHH--HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHH
Confidence 112222222 4444455 5566666666555432 123456677777777778888888887777776543 3456666
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--------CCCCHHHHHHHH
Q 003913 373 KMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETG--------MKPLMPSYINLT 444 (787)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g--------~~p~~~t~~~li 444 (787)
+...|...|++++|...|++..+.. +.+...+..+...+...|++++|...++++.+.. ...+..++..+.
T Consensus 165 l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la 243 (330)
T 3hym_B 165 IGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLG 243 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHH
Confidence 7777888888888888888777653 3356777777778888888888888887776631 123356777788
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHH-HcCCCH
Q 003913 445 NMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAY-LSSGDF 523 (787)
Q Consensus 445 ~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~-~~~g~~ 523 (787)
.+|.+.|++++|...|++..+..+.+..+|..+...|.+.|++++|.+.|++..+.. +.+...+..+..++ ...|+.
T Consensus 244 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 244 HVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR--RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC--SCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC--CCchHHHHHHHHHHHHHhCch
Confidence 888888888888888888777556677778888888888888888888888887763 44667777777766 345543
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.71 E-value=9.2e-17 Score=171.73 Aligned_cols=259 Identities=9% Similarity=-0.018 Sum_probs=130.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003913 334 VLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLC 413 (787)
Q Consensus 334 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 413 (787)
.+..+...+.+.|++++|...++++.+..+. +..+|..+..+|.+.|++++|.+.|+++.+.. +.+..+|..+...|.
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFT 143 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 3444455555555555555555555554322 34455555555555555555555555555442 224445555555555
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHH---------------HHHHHHhcCCHHHHHHHHHHHHhcCCC--CHHHHHH
Q 003913 414 KAEETELTESLMKEFVETGMKPLMPSYIN---------------LTNMYLNLGMHDRLHLAFSECLEKCRP--NRTIYGI 476 (787)
Q Consensus 414 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~---------------li~~~~~~g~~~~a~~~~~~m~~~~~p--~~~~~~~ 476 (787)
..|++++|...++++.+.. +.+...+.. .+..+...|++++|...|+.+.+..+. +..+|..
T Consensus 144 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 222 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG 222 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHH
Confidence 5555555555555555432 111111110 122222555555555555555542222 4555555
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcc
Q 003913 477 YLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNR 556 (787)
Q Consensus 477 li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~ 556 (787)
+...|.+.|++++|+..|+++.+.. +.+..+|..+...|.+.|++++|+..|+++.+ ..|+.
T Consensus 223 l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~----~~~~~------------ 284 (368)
T 1fch_A 223 LGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEAVAAYRRALE----LQPGY------------ 284 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCc------------
Confidence 5555555555555555555555442 23445555555555555555555555555554 22221
Q ss_pred cccccccccCCchHHHHHHHHHHhhhhhhccchhhcceeEE--EEEccCC-----------cccHHHHHHHHHHchhhcC
Q 003913 557 KEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENS-----------RMHSVLRRYLYDQYHEWLH 623 (787)
Q Consensus 557 ~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--~~~~p~~-----------~~~~~~l~~~y~~~g~~~~ 623 (787)
..++..+...+...|+++.|...++ +.+.|++ ...+..++.+|...|++++
T Consensus 285 ----------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 285 ----------------IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp ----------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred ----------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 3344444555555555555554444 3334433 5667778888888888877
Q ss_pred CCcccc
Q 003913 624 PSFKVS 629 (787)
Q Consensus 624 A~~~~~ 629 (787)
|.....
T Consensus 349 A~~~~~ 354 (368)
T 1fch_A 349 YGAADA 354 (368)
T ss_dssp HHHHHT
T ss_pred HHHhHH
Confidence 755544
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.71 E-value=8.2e-13 Score=147.10 Aligned_cols=342 Identities=15% Similarity=0.076 Sum_probs=285.0
Q ss_pred cCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHc----cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCc--
Q 003913 157 IRENETGFRVYEWMMQQHWYRFDFALATKLADYMGK----ERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPV-- 230 (787)
Q Consensus 157 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~-- 230 (787)
.+++++|...|+...+.| +...+..|...|.. .+++++|...|++..+.| +...+..|-..|. .
T Consensus 56 ~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~---~g~ 125 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYH---EGN 125 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH---HTS
T ss_pred CcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH---cCC
Confidence 789999999999999887 66788888888988 899999999999999876 6677777877777 4
Q ss_pred --CCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhc
Q 003913 231 --QGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQ 308 (787)
Q Consensus 231 --~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 308 (787)
.+++++|+..|++..+. | +...+..+-..+....+ ..++.++|...|++..+.| +...+..+. ..+.
T Consensus 126 g~~~~~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~g~g--~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg--~~y~ 194 (490)
T 2xm6_A 126 GVKVDKAESVKWFRLAAEQ-G---RDSGQQSMGDAYFEGDG--VTRDYVMAREWYSKAAEQG---NVWSCNQLG--YMYS 194 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSS--SCCCHHHHHHHHHHHHHTT---CHHHHHHHH--HHHH
T ss_pred CCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCC--CCCCHHHHHHHHHHHHHCC---CHHHHHHHH--HHHh
Confidence 68999999999999875 3 34455555555554111 1158999999999999876 344444444 3343
Q ss_pred c----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-
Q 003913 309 D----NIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAK----EGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAK- 379 (787)
Q Consensus 309 ~----~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~- 379 (787)
. .++.++|...|++..+.| +...+..+...|.. .++.++|.+.|++..+.| +...+..+...|..
T Consensus 195 ~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g 268 (490)
T 2xm6_A 195 RGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQG 268 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHT
T ss_pred cCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCC
Confidence 3 789999999999998865 56788888888886 899999999999999876 56788888888888
Q ss_pred ---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003913 380 ---IGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKA-----EETELTESLMKEFVETGMKPLMPSYINLTNMYLNLG 451 (787)
Q Consensus 380 ---~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g 451 (787)
.++.++|++.|++..+.| +...+..+...|... ++.++|...+++..+.| +...+..|...|...|
T Consensus 269 ~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g 342 (490)
T 2xm6_A 269 LAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLG 342 (490)
T ss_dssp TTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCC
Confidence 899999999999998764 567788888888887 89999999999999876 5678888888888867
Q ss_pred ---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHc----C
Q 003913 452 ---MHDRLHLAFSECLEKCRPNRTIYGIYLESLKN----AGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS----S 520 (787)
Q Consensus 452 ---~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~----~ 520 (787)
+.++|.+.|++..+. .+...+..|...|.. .+++++|.+.|++..+.+ +...+..|...|.+ .
T Consensus 343 ~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~----~~~a~~~Lg~~y~~g~g~~ 416 (490)
T 2xm6_A 343 SEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG----LSAAQVQLGEIYYYGLGVE 416 (490)
T ss_dssp CHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSC
T ss_pred CcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC----CHHHHHHHHHHHHcCCCCC
Confidence 789999999998873 578899999999999 899999999999999987 67889999999998 8
Q ss_pred CCHHHHHHHHHHHHHcC
Q 003913 521 GDFVKAEKIYDLMCLKK 537 (787)
Q Consensus 521 g~~~~A~~~~~~m~~~g 537 (787)
++.++|...|++..+.+
T Consensus 417 ~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 417 RDYVQAWAWFDTASTND 433 (490)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCC
Confidence 99999999999999865
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.71 E-value=1.4e-15 Score=162.49 Aligned_cols=253 Identities=11% Similarity=-0.033 Sum_probs=186.0
Q ss_pred hhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003913 274 YYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEK 353 (787)
Q Consensus 274 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ 353 (787)
|++++|...|+++++.... +...+..+. ..+...|++++|...|+++.+.. +.+..++..+..+|...|++++|.+
T Consensus 78 g~~~~A~~~~~~al~~~p~-~~~~~~~l~--~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 153 (368)
T 1fch_A 78 GDLPNAVLLFEAAVQQDPK-HMEAWQYLG--TTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACE 153 (368)
T ss_dssp TCHHHHHHHHHHHHHSCTT-CHHHHHHHH--HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHH--HHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 3555555555555544321 222222222 45555566666666666665542 2255667777777777777777777
Q ss_pred HHHHHHhCCCCCCHHHHHH---------------HHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCC
Q 003913 354 TWLRLLESDNGIPTPAFVY---------------KMEAYAKIGEFMKSLEIFREMQERLGSA-SVPAYHKIIELLCKAEE 417 (787)
Q Consensus 354 ~~~~m~~~~~~~~~~~~~~---------------li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~ 417 (787)
.++++.+..... ...+.. .+..+...|++++|...|+++.+..... +..++..+...|...|+
T Consensus 154 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~ 232 (368)
T 1fch_A 154 ILRDWLRYTPAY-AHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGE 232 (368)
T ss_dssp HHHHHHHTSTTT-GGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCcCc-HHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCC
Confidence 777777765331 122211 2333448899999999999998763221 47889999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 003913 418 TELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHM 497 (787)
Q Consensus 418 ~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 497 (787)
+++|...++++.+.. +.+..++..+...|.+.|++++|...|+++.+..+.+..+|..+...|.+.|++++|...|+++
T Consensus 233 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 311 (368)
T 1fch_A 233 YDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEA 311 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999998864 4467899999999999999999999999998866778899999999999999999999999998
Q ss_pred hhCCCCCCC-----------HHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003913 498 HSDQTIGVN-----------TRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (787)
Q Consensus 498 ~~~~~~~p~-----------~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (787)
.+.. +.+ ..+|..+..+|...|++++|..++++-+
T Consensus 312 l~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 312 LNMQ--RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHH--HTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HHhC--CCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 8753 223 6899999999999999999999887443
No 23
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.69 E-value=2.3e-13 Score=151.55 Aligned_cols=340 Identities=13% Similarity=0.027 Sum_probs=276.4
Q ss_pred hHHHHHHHHHHhcCCCccCHHHHHHHHHHHHc----cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCc----CC
Q 003913 161 ETGFRVYEWMMQQHWYRFDFALATKLADYMGK----ERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPV----QG 232 (787)
Q Consensus 161 ~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~----~g 232 (787)
..+...+....+.| +...+..|...|.. .+++++|...|++..+.| +...+..|-..|. . .+
T Consensus 24 ~~~~~~~~~~a~~g----~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~---~g~g~~~ 93 (490)
T 2xm6_A 24 NVNLEQLKQKAESG----EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYM---NGEGVPQ 93 (490)
T ss_dssp -CCHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH---HTSSSCC
T ss_pred hHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH---cCCCCCC
Confidence 33456666666666 67777788888887 899999999999998875 6778888888887 5 79
Q ss_pred CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhh--ccC
Q 003913 233 CLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSY--QDN 310 (787)
Q Consensus 233 ~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~--~~~ 310 (787)
++++|++.|++..+. | +...+..+-..+....| ..+++++|...|++..+.|. ...+..+..++.. .-.
T Consensus 94 ~~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~g~g--~~~~~~~A~~~~~~a~~~~~---~~a~~~Lg~~y~~g~g~~ 164 (490)
T 2xm6_A 94 DYAQAVIWYKKAALK-G---LPQAQQNLGVMYHEGNG--VKVDKAESVKWFRLAAEQGR---DSGQQSMGDAYFEGDGVT 164 (490)
T ss_dssp CHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSS--SCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSC
T ss_pred CHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCC--CCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCCC
Confidence 999999999999875 3 44555555555554211 01589999999999998873 3444444422222 227
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCC
Q 003913 311 IDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAK----EGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAK----IGE 382 (787)
Q Consensus 311 g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~ 382 (787)
++.++|...|++..+.| +...+..+...|.. .++.++|.+.|++..+.| +...+..+...|.. .++
T Consensus 165 ~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~ 238 (490)
T 2xm6_A 165 RDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQD 238 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCC
Confidence 88999999999998875 67888888888888 899999999999999887 67888889999987 899
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CCH
Q 003913 383 FMKSLEIFREMQERLGSASVPAYHKIIELLCK----AEETELTESLMKEFVETGMKPLMPSYINLTNMYLNL-----GMH 453 (787)
Q Consensus 383 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~-----g~~ 453 (787)
+++|...|++..+.| +...+..+...|.. .++.++|...|++..+.| +...+..|...|... +++
T Consensus 239 ~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~ 312 (490)
T 2xm6_A 239 YTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNR 312 (490)
T ss_dssp HHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCH
Confidence 999999999998764 56777778888887 899999999999998765 567888889999887 899
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHc----CCCHHHH
Q 003913 454 DRLHLAFSECLEKCRPNRTIYGIYLESLKNAG---NIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS----SGDFVKA 526 (787)
Q Consensus 454 ~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~----~g~~~~A 526 (787)
++|...|++..+. .+...+..|...|.+.| ++++|.++|++..+.| +...+..|...|.. .+++++|
T Consensus 313 ~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A 386 (490)
T 2xm6_A 313 EQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG----EKAAQFNLGNALLQGKGVKKDEQQA 386 (490)
T ss_dssp HHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 9999999998873 35678888999998877 8899999999999986 78899999999998 8999999
Q ss_pred HHHHHHHHHcC
Q 003913 527 EKIYDLMCLKK 537 (787)
Q Consensus 527 ~~~~~~m~~~g 537 (787)
..+|++..+.|
T Consensus 387 ~~~~~~A~~~~ 397 (490)
T 2xm6_A 387 AIWMRKAAEQG 397 (490)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhCC
Confidence 99999999865
No 24
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.68 E-value=1.1e-16 Score=168.28 Aligned_cols=283 Identities=12% Similarity=0.103 Sum_probs=142.4
Q ss_pred HccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCC
Q 003913 191 GKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGG 270 (787)
Q Consensus 191 ~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~ 270 (787)
-+.|++++|.++++++.. ..+|..|..++. +.|++++|++.|.+. +|..+|..++.++...
T Consensus 14 ~~~~~ld~A~~fae~~~~------~~vWs~La~A~l---~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~--- 74 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNE------PAVWSQLAKAQL---QKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTS--- 74 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCC------hHHHHHHHHHHH---HcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhC---
Confidence 367889999999999943 358999999999 899999999999642 5667888888888775
Q ss_pred CChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 003913 271 LSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVED 350 (787)
Q Consensus 271 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 350 (787)
|++++|...++..++. .+++.+.+.++ .+|.+.|+++++.++++ .|+..+|..+...|...|++++
T Consensus 75 ---g~~EeAi~yl~~ark~--~~~~~i~~~Li--~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yee 140 (449)
T 1b89_A 75 ---GNWEELVKYLQMARKK--ARESYVETELI--FALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDA 140 (449)
T ss_dssp -----------------------------------------CHHHHTTTTT-------CC----------------CTTT
T ss_pred ---CCHHHHHHHHHHHHHh--CccchhHHHHH--HHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHH
Confidence 6999999977777663 34467777777 88899999999988885 4788899999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003913 351 AEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVE 430 (787)
Q Consensus 351 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 430 (787)
|...|..+ ..|..|+.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......
T Consensus 141 A~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~--- 202 (449)
T 1b89_A 141 AKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH--- 202 (449)
T ss_dssp HHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT---
T ss_pred HHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH---
Confidence 99999976 37899999999999999999999988 2889999999999999999999655443
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHhhhCCCCCC---
Q 003913 431 TGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNA--GNIEKAEEIFNHMHSDQTIGV--- 505 (787)
Q Consensus 431 ~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~--g~~~~A~~l~~~m~~~~~~~p--- 505 (787)
+...+.-...++..|.+.|++++|..+++..+..-+-....|+-|.-+|++- +++.+.+++|..-.. ++|
T Consensus 203 --L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~in---i~k~~~ 277 (449)
T 1b89_A 203 --IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVN---IPKVLR 277 (449)
T ss_dssp --TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSC---HHHHHH
T ss_pred --HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhc---CcHHHH
Confidence 2233444557999999999999999999999875577889999999999885 466677777663332 444
Q ss_pred ---CHHHHHHHHHHHHcCCCHHHHHHH
Q 003913 506 ---NTRSCNIILSAYLSSGDFVKAEKI 529 (787)
Q Consensus 506 ---~~~t~~~li~~~~~~g~~~~A~~~ 529 (787)
+...|.-+.-.|.+.++++.|...
T Consensus 278 ~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 278 AAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 567899999999999999988763
No 25
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.68 E-value=6e-13 Score=149.80 Aligned_cols=370 Identities=9% Similarity=0.040 Sum_probs=207.6
Q ss_pred hhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCH
Q 003913 155 MRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCL 234 (787)
Q Consensus 155 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~ 234 (787)
.+.|++++|..+|+.+.+. ++.+...|..++..+.+.|++++|..+|++..... |++..|...+.-... ..|+.
T Consensus 23 ~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~--~~~~~ 96 (530)
T 2ooe_A 23 AQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRE--TKGKL 96 (530)
T ss_dssp HHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHH--HTTTS
T ss_pred HHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHH--Hccch
Confidence 4679999999999999987 47788899999999999999999999999998863 788888887764432 35666
Q ss_pred HHHHH----HHHHHHHhCCCCCC-HHHHHHHHHHHHcCCC---CCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHh-
Q 003913 235 DEACS----IYNRMIQLGGYQPR-PSLHNSLFRALVSKPG---GLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLH- 305 (787)
Q Consensus 235 ~~A~~----l~~~m~~~~g~~pd-~~t~~~ll~~~~~~~~---~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~- 305 (787)
++|.+ +|+.....-|..|+ ...|...+........ ....|+++.|..+|++.++.........+.......
T Consensus 97 ~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~ 176 (530)
T 2ooe_A 97 PSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEE 176 (530)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHH
Confidence 66554 78877765455554 4556665554432100 001378999999999998732111112222211100
Q ss_pred ----------hhccCCCHHHHHHHHHHHH------HcC---CCCC--------HHHHHHHHHHHHhc----CCh----HH
Q 003913 306 ----------SYQDNIDKERISLLKKEMQ------QAG---FEEG--------KEVLLSVLRVCAKE----GDV----ED 350 (787)
Q Consensus 306 ----------~~~~~g~~~~a~~l~~~m~------~~g---~~p~--------~~t~~~li~~~~~~----g~~----~~ 350 (787)
.....+++..|..++.++. +.. +.|+ ...|...+...... ++. ..
T Consensus 177 ~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~ 256 (530)
T 2ooe_A 177 GINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKR 256 (530)
T ss_dssp HHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHH
T ss_pred hhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHH
Confidence 0012233455555554421 110 2232 12333333222211 122 24
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHH-------cCChH-------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003913 351 AEKTWLRLLESDNGIPTPAFVYKMEAYAK-------IGEFM-------KSLEIFREMQERLGSASVPAYHKIIELLCKAE 416 (787)
Q Consensus 351 A~~~~~~m~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 416 (787)
|..+|++.+...+ -+...|..++..+.+ .|+++ +|..+|++..+.-.+-+...|..++..+.+.|
T Consensus 257 a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g 335 (530)
T 2ooe_A 257 VMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM 335 (530)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC
Confidence 5555655555432 245555555555554 45554 56666666554212224555666666666666
Q ss_pred ChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHhcCCHHHHHHH
Q 003913 417 ETELTESLMKEFVETGMKPL--MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLES-LKNAGNIEKAEEI 493 (787)
Q Consensus 417 ~~~~A~~l~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~-~~~~g~~~~A~~l 493 (787)
++++|..+|+++++. .|+ ..+|..++..+.+.|++++|..+|+...+..+.+...|...+.. +...|+.++|..+
T Consensus 336 ~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~ 413 (530)
T 2ooe_A 336 KYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI 413 (530)
T ss_dssp CHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred CHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHH
Confidence 666666666666652 332 23555666666666666666666666655322233333222211 2245666666666
Q ss_pred HHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 494 FNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 494 ~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
|++..+.. +.+...|..++..+.+.|+.++|..+|++.+.
T Consensus 414 ~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~ 453 (530)
T 2ooe_A 414 FELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 453 (530)
T ss_dssp HHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHh
Confidence 66655542 33455666666666666666666666666655
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.66 E-value=5.1e-15 Score=158.12 Aligned_cols=270 Identities=12% Similarity=0.001 Sum_probs=212.9
Q ss_pred HHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 003913 300 GLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAK 379 (787)
Q Consensus 300 ~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 379 (787)
++..+..+.+.|++++|..+|+++.+.. +.+..++..+..+|.+.|++++|...|+++.+..+. +..+|..+...|.+
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAVSYTN 145 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHc
Confidence 3444577888999999999999998863 346788999999999999999999999999987643 68899999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCC-----------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHH
Q 003913 380 IGEFMKSLEIFREMQERLGSAS-----------VPAYHKIIELLCKAEETELTESLMKEFVETGMK-PLMPSYINLTNMY 447 (787)
Q Consensus 380 ~g~~~~A~~~~~~m~~~g~~p~-----------~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~li~~~ 447 (787)
.|++++|...|+++.+.. |+ ...+..+...+...|++++|..+++++.+..-. ++..++..+...|
T Consensus 146 ~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp TTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 999999999999998752 22 223344578899999999999999999986422 2688999999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 003913 448 LNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAE 527 (787)
Q Consensus 448 ~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~ 527 (787)
...|++++|...|+++.+..+.+..+|+.+...|.+.|++++|+..|+++.+.. +.+..+|..+...|.+.|++++|.
T Consensus 224 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ--PGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999998777889999999999999999999999999999874 456899999999999999999999
Q ss_pred HHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhhhhccchhhccee
Q 003913 528 KIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHM 595 (787)
Q Consensus 528 ~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 595 (787)
..|+++.+ ..|+.... ........+..+|..|..++...|+.+.+..+
T Consensus 302 ~~~~~al~----~~~~~~~~----------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 349 (365)
T 4eqf_A 302 SNFLTALS----LQRKSRNQ----------------QQVPHPAISGNIWAALRIALSLMDQPELFQAA 349 (365)
T ss_dssp HHHHHHHH----HHHCC----------------------------CHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHH----hCcccCCC----------------cccchhhhHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 99999987 34431000 00000011256788888888888877666544
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.66 E-value=9.8e-15 Score=155.87 Aligned_cols=197 Identities=11% Similarity=-0.072 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC---------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CC
Q 003913 332 KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNG---------IPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGS-AS 401 (787)
Q Consensus 332 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~ 401 (787)
..++..+..+|...|++++|...++++.+..+. .....+..+...|.+.|++++|...|+++.+.... ++
T Consensus 133 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 212 (365)
T 4eqf_A 133 LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMID 212 (365)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCC
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccC
Confidence 334444444455555555555555554443210 01233445677888888888888888888776322 15
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 003913 402 VPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESL 481 (787)
Q Consensus 402 ~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~ 481 (787)
..+|..+...|...|++++|...++++.+.. +.+..++..+..+|.+.|++++|...|+++.+..+.+..+|..+...|
T Consensus 213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 291 (365)
T 4eqf_A 213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISC 291 (365)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 7788888888888888888888888888754 446788888999999999999999999988886667788999999999
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCC-------------CHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 003913 482 KNAGNIEKAEEIFNHMHSDQTIGV-------------NTRSCNIILSAYLSSGDFVKAEKIYDL 532 (787)
Q Consensus 482 ~~~g~~~~A~~l~~~m~~~~~~~p-------------~~~t~~~li~~~~~~g~~~~A~~~~~~ 532 (787)
.+.|++++|...|+++.+.. | +...|..+..++...|+.+.|.++.++
T Consensus 292 ~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 292 INLGAYREAVSNFLTALSLQ---RKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHTCCHHHHHHHHHHHHHH---HCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHhC---cccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999999999887642 2 267899999999999999888877664
No 28
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.66 E-value=3.1e-14 Score=160.30 Aligned_cols=412 Identities=12% Similarity=0.082 Sum_probs=258.8
Q ss_pred HHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHH
Q 003913 167 YEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQ 246 (787)
Q Consensus 167 ~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~ 246 (787)
++..++.. +.+..+|..++. +.+.|++++|..+|+++.+.. +-+...|...+..+. +.|++++|..+|+++..
T Consensus 2 le~al~~~--P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~---~~~~~~~a~~~~~ral~ 74 (530)
T 2ooe_A 2 AEKKLEEN--PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEI---KAKNYDKVEKLFQRCLM 74 (530)
T ss_dssp HHHHHHHC--TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHTT
T ss_pred hhhHhhhC--CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHh
Confidence 45555554 568889999998 478999999999999999863 225678999999998 79999999999999997
Q ss_pred hCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHH----HHHHHHHHHc-CCcc-CHHHHHHHHHHhh-------hccCCCH
Q 003913 247 LGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQA----EFIFHNLLTS-GLEI-QKDIYSGLIWLHS-------YQDNIDK 313 (787)
Q Consensus 247 ~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A----~~~~~~m~~~-~~~p-~~~~~~~li~~~~-------~~~~g~~ 313 (787)
. .|+...|...+....... |+.+.| .++|+..+.. |..| +...+...+.... +...|+.
T Consensus 75 ~---~p~~~lw~~~~~~~~~~~-----~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 146 (530)
T 2ooe_A 75 K---VLHIDLWKCYLSYVRETK-----GKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRI 146 (530)
T ss_dssp T---CCCHHHHHHHHHHHHHHT-----TTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHH
T ss_pred c---CCChHHHHHHHHHHHHHc-----cchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHH
Confidence 3 478777766665333222 244444 4477776543 5444 3344444332211 1125778
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHH-------------HhcCChHHHHHHHHHH------HhCC---CCCC-----
Q 003913 314 ERISLLKKEMQQAGFEEGKEVLLSVLRVC-------------AKEGDVEDAEKTWLRL------LESD---NGIP----- 366 (787)
Q Consensus 314 ~~a~~l~~~m~~~g~~p~~~t~~~li~~~-------------~~~g~~~~A~~~~~~m------~~~~---~~~~----- 366 (787)
++|..+|++..+....+....|....... .+.++++.|..++.++ .+.. +.|+
T Consensus 147 ~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~ 226 (530)
T 2ooe_A 147 TAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQE 226 (530)
T ss_dssp HHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCH
T ss_pred HHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhH
Confidence 99999999888731111123343322211 1234566677666652 2221 2232
Q ss_pred ---HHHHHHHHHHHHHc----CCh----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------cCChH-------HH
Q 003913 367 ---TPAFVYKMEAYAKI----GEF----MKSLEIFREMQERLGSASVPAYHKIIELLCK-------AEETE-------LT 421 (787)
Q Consensus 367 ---~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~-------~g~~~-------~A 421 (787)
...|...+...-.. ++. ++|..+|++..... +-+...|...+..+.+ .|+++ +|
T Consensus 227 ~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A 305 (530)
T 2ooe_A 227 AQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA 305 (530)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHH
Confidence 24555444332222 122 36777888877652 3367777777777765 67776 78
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 003913 422 ESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNR-TIYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 422 ~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (787)
..++++..+.-.+-+...+..++..+.+.|++++|..+|+.+++..+.+. .+|..++..+.+.|++++|.++|++..+.
T Consensus 306 ~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~ 385 (530)
T 2ooe_A 306 ANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 385 (530)
T ss_dssp HHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 88888877522233577888888888888888888888888887433343 57888888888888888888888888875
Q ss_pred CCCCCCHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHH
Q 003913 501 QTIGVNTRSCNIILSA-YLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLL 579 (787)
Q Consensus 501 ~~~~p~~~t~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~l 579 (787)
. +.+...|...... +...|+.++|..+|++.++ ..|+. ..+|..+
T Consensus 386 ~--~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~----~~p~~----------------------------~~~~~~~ 431 (530)
T 2ooe_A 386 A--RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLK----KYGDI----------------------------PEYVLAY 431 (530)
T ss_dssp T--TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHH----HHTTC----------------------------HHHHHHH
T ss_pred c--CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHH----HCCCC----------------------------HHHHHHH
Confidence 3 2233333332222 3357888888888888876 23331 4566677
Q ss_pred hhhhhhccchhhcceeEE--EEEccCCcc----cHHHHHHHHHHchhhcCCCccc
Q 003913 580 LGGLCIESDEKRKRHMIR--FQFNENSRM----HSVLRRYLYDQYHEWLHPSFKV 628 (787)
Q Consensus 580 l~~~~~~~~~~~a~~~~~--~~~~p~~~~----~~~~l~~~y~~~g~~~~A~~~~ 628 (787)
+......|+.+.|+.+++ +...|.++. .+..........|+.+.+....
T Consensus 432 ~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~ 486 (530)
T 2ooe_A 432 IDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 486 (530)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 777777777777777766 333343332 3333344455556555543333
No 29
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.66 E-value=4e-13 Score=156.76 Aligned_cols=331 Identities=11% Similarity=0.041 Sum_probs=261.0
Q ss_pred ccCCcchHHHHHHHhhcCChhHHHHHHHHHHhcCC-CccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHH
Q 003913 141 WLRQEDGTYLAVHCMRIRENETGFRVYEWMMQQHW-YRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFH 219 (787)
Q Consensus 141 ~~~p~~~t~~~~~~~~~~~~~~A~~~~~~m~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~ 219 (787)
...|+.++..+-++...|.+.+|+++++.+.-.+. +..+....+.|+....|. +..+..++.++.... + ..
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~ 1053 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---AP 1053 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HH
Confidence 47799999999999999999999999999995542 335667777788777776 567777777766532 2 23
Q ss_pred HHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHH
Q 003913 220 ILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYS 299 (787)
Q Consensus 220 ~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 299 (787)
-+-..+. ..|.+++|..+|++... .....+.++... |++++|.++.++.. ++.++.
T Consensus 1054 eIA~Iai---~lglyEEAf~IYkKa~~------~~~A~~VLie~i---------~nldrAiE~Aervn------~p~vWs 1109 (1630)
T 1xi4_A 1054 DIANIAI---SNELFEEAFAIFRKFDV------NTSAVQVLIEHI---------GNLDRAYEFAERCN------EPAVWS 1109 (1630)
T ss_pred HHHHHHH---hCCCHHHHHHHHHHcCC------HHHHHHHHHHHH---------hhHHHHHHHHHhcC------CHHHHH
Confidence 3445555 78999999999998621 122234444422 58999999998662 255666
Q ss_pred HHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 003913 300 GLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAK 379 (787)
Q Consensus 300 ~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 379 (787)
.+. .++.+.|++++|...|.+. -|...|.-++.+|.+.|++++|.+.+....+... +....+.++.+|++
T Consensus 1110 qLA--KAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~--e~~Idt~LafaYAK 1179 (1630)
T 1xi4_A 1110 QLA--KAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAK 1179 (1630)
T ss_pred HHH--HHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--cccccHHHHHHHHh
Confidence 555 8999999999999999653 4778899999999999999999999998877653 33334459999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003913 380 IGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLA 459 (787)
Q Consensus 380 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~ 459 (787)
.+++++...+. + .++...|..+...|...|++++|..+|... ..|..+..+|++.|+++.|.+.
T Consensus 1180 l~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEa 1243 (1630)
T 1xi4_A 1180 TNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDG 1243 (1630)
T ss_pred hcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHH
Confidence 99998644332 2 357778888999999999999999999985 4899999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCc
Q 003913 460 FSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYE 539 (787)
Q Consensus 460 ~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 539 (787)
+++. .+..+|..+-.+|...|++..|......+. .+...+..++.-|.+.|.+++|+.+++..+.
T Consensus 1244 arKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~Ii------v~~deLeeli~yYe~~G~feEAI~LlE~aL~---- 1308 (1630)
T 1xi4_A 1244 ARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIV------VHADELEELINYYQDRGYFEELITMLEAALG---- 1308 (1630)
T ss_pred HHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh------cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc----
Confidence 9986 477999999999999999999998877533 3566778999999999999999999976653
Q ss_pred cCHHH
Q 003913 540 IESAW 544 (787)
Q Consensus 540 ~~p~~ 544 (787)
+++..
T Consensus 1309 LeraH 1313 (1630)
T 1xi4_A 1309 LERAH 1313 (1630)
T ss_pred cChhH
Confidence 66654
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.65 E-value=1.7e-15 Score=158.75 Aligned_cols=230 Identities=12% Similarity=-0.037 Sum_probs=177.3
Q ss_pred HHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 003913 300 GLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAK 379 (787)
Q Consensus 300 ~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 379 (787)
++..+..+...|++++|..+|+++.+.. +.+..++..+..++...|++++|.+.++++.+.... +..++..+...|..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHHHHHH
Confidence 3444467788888999999998887753 236677888888888899999999999888887543 67788888888889
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHH--------------HH-HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003913 380 IGEFMKSLEIFREMQERLGSASVPAYHKI--------------IE-LLCKAEETELTESLMKEFVETGMKPLMPSYINLT 444 (787)
Q Consensus 380 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~l--------------i~-~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li 444 (787)
.|++++|.+.|+++.+.... +...+..+ .. .+...|++++|...++++.+.. +.+..++..+.
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 179 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLG 179 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 99999999999888875322 23333333 22 3667788888888888888754 44678888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHH
Q 003913 445 NMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFV 524 (787)
Q Consensus 445 ~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~ 524 (787)
..|...|++++|...++.+.+..+.+..+|..+...|.+.|++++|.+.|+++.+.. +.+..+|..+...|.+.|+++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN--PGYVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhccHH
Confidence 888888888888888888887666778888888888888888888888888888764 456788888888888888888
Q ss_pred HHHHHHHHHHH
Q 003913 525 KAEKIYDLMCL 535 (787)
Q Consensus 525 ~A~~~~~~m~~ 535 (787)
+|.+.|+++.+
T Consensus 258 ~A~~~~~~a~~ 268 (327)
T 3cv0_A 258 LAAKQLVRAIY 268 (327)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888888875
No 31
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.64 E-value=1.5e-13 Score=152.20 Aligned_cols=368 Identities=11% Similarity=-0.022 Sum_probs=245.0
Q ss_pred CHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHh----CC--CCCC-HHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHH
Q 003913 214 SEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQL----GG--YQPR-PSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNL 286 (787)
Q Consensus 214 d~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~----~g--~~pd-~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m 286 (787)
....||.|-..+. ..|++++|++.|++..+. .+ ..|+ .++|+.+-..+... |++++|...+++.
T Consensus 50 ~a~~yn~Lg~~~~---~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~------g~~~~A~~~~~ka 120 (472)
T 4g1t_A 50 KATMCNLLAYLKH---LKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHM------GRLSDVQIYVDKV 120 (472)
T ss_dssp CCHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHT------TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHc------CChHHHHHHHHHH
Confidence 3456788777777 688888888888876542 11 1333 46788777777776 7999999999887
Q ss_pred HHcCC-------ccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH---HHhcCChHHHHHHH
Q 003913 287 LTSGL-------EIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEG-KEVLLSVLRV---CAKEGDVEDAEKTW 355 (787)
Q Consensus 287 ~~~~~-------~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~t~~~li~~---~~~~g~~~~A~~~~ 355 (787)
.+... .-...++............+++++|...|++..+. .|+ ...+..+..+ +...++.++|.+.+
T Consensus 121 ~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~ 198 (472)
T 4g1t_A 121 KHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPL 198 (472)
T ss_dssp HHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHH
T ss_pred HHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 65310 11245555554445556677899999999998874 454 3444444444 44568888999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003913 356 LRLLESDNGIPTPAFVYKMEAYAK----IGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVET 431 (787)
Q Consensus 356 ~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 431 (787)
++..+..+. +..++..+...+.. .|++++|.+.+++..... +.+..++..+...|...|++++|...+++..+.
T Consensus 199 ~~al~l~p~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 276 (472)
T 4g1t_A 199 RQAIRLNPD-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY 276 (472)
T ss_dssp HHHHHHCSS-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhcCCc-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 998887643 56667666655554 467889999999988763 346778999999999999999999999999985
Q ss_pred CCCCCHHHHHHHHHHHHhc-------------------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003913 432 GMKPLMPSYINLTNMYLNL-------------------GMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEE 492 (787)
Q Consensus 432 g~~p~~~t~~~li~~~~~~-------------------g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 492 (787)
. +-+..++..+..+|... +..+.|...|....+..+.+..+|..+...|...|++++|++
T Consensus 277 ~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~ 355 (472)
T 4g1t_A 277 I-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEY 355 (472)
T ss_dssp S-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHH
T ss_pred C-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHH
Confidence 4 34567777777666432 235678888888877566777889999999999999999999
Q ss_pred HHHHhhhCCCCCCCHH----HHHHHHH-HHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCC
Q 003913 493 IFNHMHSDQTIGVNTR----SCNIILS-AYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNL 567 (787)
Q Consensus 493 l~~~m~~~~~~~p~~~----t~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l 567 (787)
.|++..+.. |+.. .+..+.. .+.+.|++++|+..|++.++ +.|+....
T Consensus 356 ~~~kaL~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~----i~~~~~~~-------------------- 408 (472)
T 4g1t_A 356 YFQKEFSKE---LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK----INQKSREK-------------------- 408 (472)
T ss_dssp HHHHHHHSC---CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH----SCCCCHHH--------------------
T ss_pred HHHHHHhcC---CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCcccHHH--------------------
Confidence 999998864 3322 2333332 34578999999999999886 45542110
Q ss_pred chHHHHHHHHHHhhhhhhccchhhcceeEEEEEccCCcccHHHHHHHHHHchhhcCCCccccCCCCCcceE
Q 003913 568 SSEQRENLIGLLLGGLCIESDEKRKRHMIRFQFNENSRMHSVLRRYLYDQYHEWLHPSFKVSDGNDDIPYK 638 (787)
Q Consensus 568 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~~~~~~p~~ 638 (787)
...+..+...+ +.+ +..+|+++.++..|+.+|...|++++|...++++++..|..
T Consensus 409 -----~~~~~~l~~~~------~~~-----l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~ 463 (472)
T 4g1t_A 409 -----EKMKDKLQKIA------KMR-----LSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLI 463 (472)
T ss_dssp -----HHHHHHHHHHH------HHH-----HHHCC-CTTHHHHHHHHHHHHHHCC----------------
T ss_pred -----HHHHHHHHHHH------HHH-----HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 01111111110 000 34578899999999999999999999999998888876654
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.64 E-value=1.6e-14 Score=151.20 Aligned_cols=197 Identities=6% Similarity=-0.072 Sum_probs=141.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003913 334 VLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLC 413 (787)
Q Consensus 334 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 413 (787)
.+..+...+...|++++|..+++++.+..+. +..++..+...|.+.|++++|...|+++.+.. +.+..++..+...+.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 4556666777788888888888887776543 66777777888888888888888888877653 336677777888888
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 003913 414 KAEETELTESLMKEFVETGMKPLMPSYINL--------------TN-MYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYL 478 (787)
Q Consensus 414 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l--------------i~-~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li 478 (787)
..|++++|...++++.+.. +.+...+..+ .. .+...|++++|...++++.+..+.+..++..+.
T Consensus 101 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 179 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG 179 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 8888888888888877642 1122222222 22 366777888888888887775566777888888
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 479 ESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 479 ~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
..|.+.|++++|.+.++++.+.. +.+..+|..+...|...|++++|...|+++.+
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88888888888888888877764 44677788888888888888888888888776
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.63 E-value=3.1e-14 Score=146.48 Aligned_cols=246 Identities=10% Similarity=0.042 Sum_probs=202.7
Q ss_pred hhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003913 274 YYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEK 353 (787)
Q Consensus 274 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ 353 (787)
|++..|...++.... ..|+...-........+...|+.+.|+..++. .-.|+..++..+...+...|+.++|.+
T Consensus 13 g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~ 86 (291)
T 3mkr_A 13 GSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVA 86 (291)
T ss_dssp TCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred HHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHH
Confidence 689999988876543 33444332334445888999999999987654 245677788999999999999999999
Q ss_pred HHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003913 354 TWLRLLESDNGI-PTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETG 432 (787)
Q Consensus 354 ~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g 432 (787)
.++++...+..| +...+..+...|.+.|++++|++.|++ +.+...+..++..|.+.|++++|...++++.+..
T Consensus 87 ~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 160 (291)
T 3mkr_A 87 ELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD 160 (291)
T ss_dssp HHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 999999876545 556677788999999999999999987 4588899999999999999999999999999864
Q ss_pred CCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHH
Q 003913 433 MKPLMPS---YINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRS 509 (787)
Q Consensus 433 ~~p~~~t---~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t 509 (787)
|+... ...++..+...|++++|..+|+++.+..+.+...|+.+..+|.+.|++++|++.|++..+.. +-+..+
T Consensus 161 --p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~--p~~~~~ 236 (291)
T 3mkr_A 161 --EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD--SGHPET 236 (291)
T ss_dssp --TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHH
T ss_pred --cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHH
Confidence 55321 12233445556899999999999999888899999999999999999999999999999875 568889
Q ss_pred HHHHHHHHHcCCCHHH-HHHHHHHHHH
Q 003913 510 CNIILSAYLSSGDFVK-AEKIYDLMCL 535 (787)
Q Consensus 510 ~~~li~~~~~~g~~~~-A~~~~~~m~~ 535 (787)
+..++..+...|+.++ +.++++++++
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999999999999976 6789999987
No 34
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.61 E-value=3.5e-16 Score=164.52 Aligned_cols=285 Identities=11% Similarity=0.050 Sum_probs=130.6
Q ss_pred hhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003913 274 YYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEK 353 (787)
Q Consensus 274 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ 353 (787)
|++++|.++++++. ++.+++.+. .++.+.|++++|.+.|.+ .+|..+|..++.++...|++++|.+
T Consensus 17 ~~ld~A~~fae~~~------~~~vWs~La--~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 17 GNLDRAYEFAERCN------EPAVWSQLA--KAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhCC------ChHHHHHHH--HHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 58999999999983 234556555 999999999999999965 3588899999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 003913 354 TWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGM 433 (787)
Q Consensus 354 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 433 (787)
+++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|..+|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 88777764 3457889999999999999999998885 378889999999999999999999999977
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHH
Q 003913 434 KPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNII 513 (787)
Q Consensus 434 ~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~l 513 (787)
..|..|+.++.+.|++++|.+.+.++ .++.+|..++.+|+..|+++.|......+. +.|+ -...+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~----~~ad--~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIV----VHAD--ELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT----TCHH--HHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHHHH----hCHh--hHHHH
Confidence 37999999999999999999999998 389999999999999999999977666543 2243 35579
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhhhhccchhhcc
Q 003913 514 LSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKR 593 (787)
Q Consensus 514 i~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~ 593 (787)
+..|.+.|++++|+.+++..+. .++..+. ..+-..++.+..+-+++.+..
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~----le~ah~~--------------------------~ftel~il~~ky~p~k~~ehl 263 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALG----LERAHMG--------------------------MFTELAILYSKFKPQKMREHL 263 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTT----STTCCHH--------------------------HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhC----CcHHHHH--------------------------HHHHHHHHHHhcCHHHHHHHH
Confidence 9999999999999999998774 4443211 112222222222233333444
Q ss_pred eeEE--EEEcc-----CCcccHHHHHHHHHHchhhcCCCccccCC
Q 003913 594 HMIR--FQFNE-----NSRMHSVLRRYLYDQYHEWLHPSFKVSDG 631 (787)
Q Consensus 594 ~~~~--~~~~p-----~~~~~~~~l~~~y~~~g~~~~A~~~~~~~ 631 (787)
+.+. +.+.| .+.-.+.-++.+|...++|+.|...++..
T Consensus 264 ~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 264 ELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp HHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 4333 44444 56667778888899999999887766443
No 35
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.61 E-value=9.4e-13 Score=145.77 Aligned_cols=379 Identities=13% Similarity=0.032 Sum_probs=244.3
Q ss_pred ccCHHHHHHHHHHHHccCChhHHHHHHHHHHHC-----C--CCC-CHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhC
Q 003913 177 RFDFALATKLADYMGKERKFAKCRDIFDDIINQ-----G--RVP-SEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLG 248 (787)
Q Consensus 177 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-----g--~~p-d~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~ 248 (787)
......||.|...+...|++++|++.|++..+. + ..| ..++|+.+-..|. ..|++++|+..|++..+..
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~---~~g~~~~A~~~~~ka~~i~ 124 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYY---HMGRLSDVQIYVDKVKHVC 124 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHH---HcCChHHHHHHHHHHHHHh
Confidence 344678999999999999999999999876541 1 122 4578999999998 7999999999999876420
Q ss_pred -----CCCCC-HHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHH-HhhhccCCCHHHHHHHHH
Q 003913 249 -----GYQPR-PSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIW-LHSYQDNIDKERISLLKK 321 (787)
Q Consensus 249 -----g~~pd-~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~-~~~~~~~g~~~~a~~l~~ 321 (787)
...++ ..++...-.++..... +++++|...|++.++..+. +...+..+.. ...+...++.++|++.++
T Consensus 125 ~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~ 199 (472)
T 4g1t_A 125 EKFSSPYRIESPELDCEEGWTRLKCGG----NQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLR 199 (472)
T ss_dssp HHSCCSSCCCCHHHHHHHHHHHHHHCT----THHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHH
T ss_pred HhcccccchhhHHHHHHHHHHHHHHcc----ccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 11222 2344433333333211 4899999999999887643 3333333332 233455667778888888
Q ss_pred HHHHcCCCC-CHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 003913 322 EMQQAGFEE-GKEVLLSVLRVCAK----EGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQER 396 (787)
Q Consensus 322 ~m~~~g~~p-~~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 396 (787)
+..+. .| +..++..+...+.. .|++++|.+.+++.....+. +..++..+...|.+.|++++|...|++..+.
T Consensus 200 ~al~l--~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 276 (472)
T 4g1t_A 200 QAIRL--NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEY 276 (472)
T ss_dssp HHHHH--CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhc--CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 87764 34 45566655555544 56788999999998887654 6788999999999999999999999999876
Q ss_pred CCCCCHHHHHHHHHHHHhc-------------------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003913 397 LGSASVPAYHKIIELLCKA-------------------EETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLH 457 (787)
Q Consensus 397 g~~p~~~t~~~li~~~~~~-------------------g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 457 (787)
.. -+..++..+...|... +..++|...+++..+.. +.+..++..+...|...|++++|.
T Consensus 277 ~p-~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~ 354 (472)
T 4g1t_A 277 IP-NNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAE 354 (472)
T ss_dssp ST-TCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHH
T ss_pred CC-ChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHH
Confidence 32 2566677666655332 33567888888877754 344667889999999999999999
Q ss_pred HHHHHHHhcCCCCHH---HHHHHHH-HHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 003913 458 LAFSECLEKCRPNRT---IYGIYLE-SLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLM 533 (787)
Q Consensus 458 ~~~~~m~~~~~p~~~---~~~~li~-~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m 533 (787)
..|++.++..+++.. .+..+.. .+...|+.++|+..|++..+.. |+...+... ...+.++++..
T Consensus 355 ~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~---~~~~~~~~~---------~~~l~~~~~~~ 422 (472)
T 4g1t_A 355 YYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN---QKSREKEKM---------KDKLQKIAKMR 422 (472)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC---CCCHHHHHH---------HHHHHHHHHHH
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---cccHHHHHH---------HHHHHHHHHHH
Confidence 999999873332222 2333332 3456799999999999999853 554333222 23344455554
Q ss_pred HHcCCccCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhhhhccchhhcceeEE--EEEccCCcccHHHH
Q 003913 534 CLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLR 611 (787)
Q Consensus 534 ~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--~~~~p~~~~~~~~l 611 (787)
++ .+|. +..+|..|...+...|+.++|...++ +++.|.++.+...+
T Consensus 423 l~----~~p~----------------------------~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 423 LS----KNGA----------------------------DSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HH----HCC-----------------------------CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HH----hCCC----------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 43 3444 25678899999999999999999998 77778777766555
Q ss_pred H
Q 003913 612 R 612 (787)
Q Consensus 612 ~ 612 (787)
|
T Consensus 471 G 471 (472)
T 4g1t_A 471 G 471 (472)
T ss_dssp -
T ss_pred C
Confidence 4
No 36
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.58 E-value=3.7e-13 Score=138.33 Aligned_cols=211 Identities=10% Similarity=0.096 Sum_probs=135.0
Q ss_pred hhhccCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh
Q 003913 305 HSYQDNIDKERISLLKKEMQQAGFEEG-KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEF 383 (787)
Q Consensus 305 ~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 383 (787)
..+...++.++|++.++++...+..|+ ...+..+..++...|++++|.+.+++ ..+...+..++..|.+.|++
T Consensus 73 ~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~ 146 (291)
T 3mkr_A 73 EYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRL 146 (291)
T ss_dssp HHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCH
T ss_pred HHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCH
Confidence 555566666666666666666555453 34445555667777777777777765 23566777777777777777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003913 384 MKSLEIFREMQERLGSASVPAY---HKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAF 460 (787)
Q Consensus 384 ~~A~~~~~~m~~~g~~p~~~t~---~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~ 460 (787)
++|.+.|+++.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+..+++.+..+|.+.|++++|...|
T Consensus 147 ~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l 223 (291)
T 3mkr_A 147 DLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVL 223 (291)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 77777777777653 332211 122233334477777777777777752 556777777777777777777777777
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 003913 461 SECLEKCRPNRTIYGIYLESLKNAGNIEK-AEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIY 530 (787)
Q Consensus 461 ~~m~~~~~p~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~ 530 (787)
++.++..+.+..++..++..+...|+.++ |.++++++.+.. |+... +.+...+.+.++++..-|
T Consensus 224 ~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~---P~~~~---~~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 224 QEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH---RSHPF---IKEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC---TTCHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC---CCChH---HHHHHHHHHHHHHHHHHc
Confidence 77777556677777777777777777755 567777777653 43221 233455555666655443
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.55 E-value=1.2e-12 Score=131.66 Aligned_cols=218 Identities=12% Similarity=0.073 Sum_probs=192.4
Q ss_pred HhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--C----HHHHHHHHHHH
Q 003913 304 LHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGI--P----TPAFVYKMEAY 377 (787)
Q Consensus 304 ~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~----~~~~~~li~~~ 377 (787)
+..+...|++++|...|++..+.. .+..++..+..++...|++++|.+.+++..+..... + ..+|..+...|
T Consensus 12 g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 89 (258)
T 3uq3_A 12 GNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAY 89 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHH
Confidence 477788899999999999999887 788899999999999999999999999988764321 2 57888999999
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003913 378 AKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLH 457 (787)
Q Consensus 378 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 457 (787)
.+.|++++|...|++.... .|+. ..+...|++++|...++++.+.. +.+...+..+...|...|++++|.
T Consensus 90 ~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~ 159 (258)
T 3uq3_A 90 HKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAV 159 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHH
Confidence 9999999999999999886 3453 34667788999999999998853 335678899999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 458 LAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 458 ~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
..|+++.+..+.+..+|..+...|.+.|++++|+..|++..+.. +.+..+|..+...|.+.|++++|...|++..+
T Consensus 160 ~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 160 KAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999998777789999999999999999999999999999875 56789999999999999999999999999987
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.53 E-value=1e-12 Score=128.79 Aligned_cols=200 Identities=16% Similarity=0.118 Sum_probs=162.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003913 329 EEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKI 408 (787)
Q Consensus 329 ~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 408 (787)
+++...+..+...+.+.|++++|...|++.++..+. +...+..+...|.+.|++++|+..|++..+.. +-+...|..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 456677888888999999999999999999988754 78888999999999999999999999998764 2367788899
Q ss_pred HHHHHhc-----------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 003913 409 IELLCKA-----------EETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIY 477 (787)
Q Consensus 409 i~~~~~~-----------g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~l 477 (787)
...+... |++++|...+++.++.. +-+..++..+..+|...|++++|...|++.++.. .+...+..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHH
Confidence 9999999 99999999999999854 3357889999999999999999999999999844 889999999
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003913 478 LESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (787)
Q Consensus 478 i~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (787)
...|...|++++|+..|++..+.. |.+...+..+...+.+.|++++|+..|++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA--PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999999875 5678899999999999999999999998764
No 39
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.52 E-value=3.9e-12 Score=127.63 Aligned_cols=200 Identities=15% Similarity=0.062 Sum_probs=175.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003913 332 KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIEL 411 (787)
Q Consensus 332 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 411 (787)
...+..+...+...|++++|.+.++++.+.... +..++..+...|.+.|++++|.+.|+++.+.. +.+...|..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 456778888899999999999999999887643 67888899999999999999999999998764 3367888999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHH
Q 003913 412 LCKAEETELTESLMKEFVETGMKP-LMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKA 490 (787)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A 490 (787)
|...|++++|..+++++.+.+..| +...+..+..+|...|++++|...|+++.+..+.+..++..+...|.+.|++++|
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999998744445 4678888999999999999999999999886677889999999999999999999
Q ss_pred HHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 491 EEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 491 ~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
...|+++.+.. +.+...+..+...+...|++++|.++++++.+
T Consensus 195 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 195 RQYYDLFAQGG--GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHTTS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 99999998874 56788899999999999999999999999987
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.51 E-value=3.3e-13 Score=135.75 Aligned_cols=235 Identities=9% Similarity=-0.025 Sum_probs=196.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC--CCC----HHHH
Q 003913 332 KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLG--SAS----VPAY 405 (787)
Q Consensus 332 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~t~ 405 (787)
..++..+...+...|++++|...++++.+.. .+..+|..+..+|...|++++|.+.|++..+... .++ ..+|
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3567888889999999999999999999887 6789999999999999999999999999876421 122 5789
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 003913 406 HKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAG 485 (787)
Q Consensus 406 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g 485 (787)
..+...+...|++++|...++++.+. .|+. ..+.+.|++++|...++.+.+..+.+...|..+...|...|
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhc
Confidence 99999999999999999999999984 3553 45777889999999999998866667889999999999999
Q ss_pred CHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhccccccccccc
Q 003913 486 NIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSL 565 (787)
Q Consensus 486 ~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~ 565 (787)
++++|...|+++.+.. +.+..+|..+...|.+.|++++|+..|++.++ ..|+.
T Consensus 154 ~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~----~~~~~--------------------- 206 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIE----KDPNF--------------------- 206 (258)
T ss_dssp CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTC---------------------
T ss_pred CHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH----hCHHH---------------------
Confidence 9999999999999875 56789999999999999999999999999987 34442
Q ss_pred CCchHHHHHHHHHHhhhhhhccchhhcceeEE--EEEc------cCCcccHHHH
Q 003913 566 NLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFN------ENSRMHSVLR 611 (787)
Q Consensus 566 ~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--~~~~------p~~~~~~~~l 611 (787)
..+|..+...+...|+.+.|...++ +.+. |++......+
T Consensus 207 -------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l 253 (258)
T 3uq3_A 207 -------VRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLY 253 (258)
T ss_dssp -------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHH
Confidence 4567777888888888888887776 5555 5554444444
No 41
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.49 E-value=1e-11 Score=121.72 Aligned_cols=201 Identities=13% Similarity=0.061 Sum_probs=170.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003913 331 GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIE 410 (787)
Q Consensus 331 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 410 (787)
+..++..+...+...|++++|.+.++++.+.... +..++..+...|...|++++|.+.|+++.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 3456778888889999999999999988887643 57788889999999999999999999988763 336778888999
Q ss_pred HHHhc-CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHH
Q 003913 411 LLCKA-EETELTESLMKEFVETGMKPL-MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIE 488 (787)
Q Consensus 411 ~~~~~-g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~ 488 (787)
.+... |++++|...++++.+.+..|+ ..++..+..+|...|++++|...|.++.+..+.+..++..+...|.+.|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 99999 999999999999988433443 6788889999999999999999999998866677889999999999999999
Q ss_pred HHHHHHHHhhhCCCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 489 KAEEIFNHMHSDQTIG-VNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 489 ~A~~l~~~m~~~~~~~-p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
+|.+.++++.+.. + .+...+..+...+...|+.++|..+++.+.+
T Consensus 165 ~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRV--EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 9999999998864 4 5778888888888999999999999999875
No 42
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.48 E-value=2.3e-12 Score=128.35 Aligned_cols=200 Identities=13% Similarity=0.099 Sum_probs=157.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003913 331 GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIE 410 (787)
Q Consensus 331 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 410 (787)
...+|..+...+...|++++|...++++.+.... +..++..+...|.+.|++++|.+.|+++.+.. +.+..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 4556777778888899999999999998886543 67888888999999999999999999988763 336788888999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHH
Q 003913 411 LLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKA 490 (787)
Q Consensus 411 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A 490 (787)
.+...|++++|...++++.+.. +.+..++..+...|.+.|++++|...++++.+..+.+..++..+...|.+.|++++|
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999998864 456788899999999999999999999999886677889999999999999999999
Q ss_pred HHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 491 EEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 491 ~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
...|+++.+.. +.+..+|..+...|.+.|++++|.+.|+++.+
T Consensus 179 ~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 179 LSQFAAVTEQD--PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 99999998874 55788999999999999999999999999987
No 43
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.46 E-value=4.7e-12 Score=128.70 Aligned_cols=220 Identities=15% Similarity=0.071 Sum_probs=152.7
Q ss_pred ccCCCHHHHHHHHHHHHHcCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChH
Q 003913 308 QDNIDKERISLLKKEMQQAGFE--E-GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFM 384 (787)
Q Consensus 308 ~~~g~~~~a~~l~~~m~~~g~~--p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 384 (787)
...|++++|...|+++.+.... | +..++..+...+...|++++|...|+++.+..+. +..+|..+...|...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHH
Confidence 4445666666666666654321 1 3456677777777788888888888777776543 5677777788888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003913 385 KSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECL 464 (787)
Q Consensus 385 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 464 (787)
+|.+.|++..+.. +.+..+|..+...|...|++++|...++++.+. .|+.......+..+...|++++|...+....
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 8888888777652 225667777778888888888888888887764 3444444444455566678888888887777
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 465 EKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVN-----TRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 465 ~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~-----~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
...+++...+. ++..+...++.++|.+.+++..... |+ ..+|..+...|.+.|++++|...|++..+
T Consensus 172 ~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 172 EKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDN---TSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSH---HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhccc---ccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 65555555554 5666677777788888888776653 22 46777788888888888888888888875
No 44
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.46 E-value=1.7e-10 Score=134.93 Aligned_cols=311 Identities=13% Similarity=0.106 Sum_probs=240.5
Q ss_pred HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCC
Q 003913 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQG 232 (787)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g 232 (787)
.|...|.+++|..+|+.... .....+.++. ..+++++|.++.++.. +..+|..+-.++. +.|
T Consensus 1058 Iai~lglyEEAf~IYkKa~~------~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql---~~G 1119 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFDV------NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQL---QKG 1119 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcCC------HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHH---hCC
Confidence 45677888888888887531 2222334433 6678888888888652 5778999999999 899
Q ss_pred CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCC
Q 003913 233 CLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNID 312 (787)
Q Consensus 233 ~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~ 312 (787)
++++|+..|.+. -|...|.-+..++.+. |++++|.+.+....+..-.|..++ .++ .+|++.++
T Consensus 1120 ~~kEAIdsYiKA-------dD~say~eVa~~~~~l------GkyEEAIeyL~mArk~~~e~~Idt--~La--faYAKl~r 1182 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA-------DDPSSYMEVVQAANTS------GNWEELVKYLQMARKKARESYVET--ELI--FALAKTNR 1182 (1630)
T ss_pred CHHHHHHHHHhc-------CChHHHHHHHHHHHHc------CCHHHHHHHHHHHHhhcccccccH--HHH--HHHHhhcC
Confidence 999999999553 3456677788888776 699999999998877663333333 454 77888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 003913 313 KERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFRE 392 (787)
Q Consensus 313 ~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 392 (787)
+++..... . .++...|..+...|...|++++|..+|... ..|..+...|++.|++++|.+.+++
T Consensus 1183 leele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarK 1246 (1630)
T 1xi4_A 1183 LAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARK 1246 (1630)
T ss_pred HHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 87644432 2 456777888999999999999999999874 4889999999999999999999987
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHH
Q 003913 393 MQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRT 472 (787)
Q Consensus 393 m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~ 472 (787)
.. +..+|..+-.+|...|++..|...... +..+...+..++..|.+.|.+++|+.+++..+...+-...
T Consensus 1247 A~------n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~g 1315 (1630)
T 1xi4_A 1247 AN------STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMG 1315 (1630)
T ss_pred hC------CHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhH
Confidence 62 778999999999999999988876553 3445667889999999999999999999888764466677
Q ss_pred HHHHHHHHHHhc--CCHHHHHHHHHHhhhCCCCCC------CHHHHHHHHHHHHcCCCHHHHHH
Q 003913 473 IYGIYLESLKNA--GNIEKAEEIFNHMHSDQTIGV------NTRSCNIILSAYLSSGDFVKAEK 528 (787)
Q Consensus 473 ~~~~li~~~~~~--g~~~~A~~l~~~m~~~~~~~p------~~~t~~~li~~~~~~g~~~~A~~ 528 (787)
.|+-|...|++. +++.++.++|..-.. ++| +...|.-++-.|.+.|+++.|..
T Consensus 1316 mftELaiLyaKy~peklmEhlk~f~~rin---i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1316 MFTELAILYSKFKPQKMREHLELFWSRVN---IPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhcc---cchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 888888888875 467777777775433 334 56789999999999999999983
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.45 E-value=1.9e-11 Score=122.61 Aligned_cols=202 Identities=6% Similarity=-0.022 Sum_probs=176.3
Q ss_pred HHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 003913 297 IYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEA 376 (787)
Q Consensus 297 ~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 376 (787)
...+...+..+...|++++|...|+++.+.. +.+..++..+...|...|++++|.+.++++.+.... +..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 3344444577888999999999999998763 336788999999999999999999999999987643 67889999999
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003913 377 YAKIGEFMKSLEIFREMQERLGSA-SVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDR 455 (787)
Q Consensus 377 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 455 (787)
|...|++++|.+.|+++...+..| +...+..+...+...|++++|...++++.+.. +.+..++..+...|...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998743344 45678889999999999999999999999864 4468899999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 003913 456 LHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ 501 (787)
Q Consensus 456 a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 501 (787)
|...++.+.+..+.+...+..+...|.+.|++++|.+.++++.+..
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 9999999998777889999999999999999999999999999874
No 46
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.45 E-value=7.3e-12 Score=122.70 Aligned_cols=196 Identities=12% Similarity=0.045 Sum_probs=163.5
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003913 365 IPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLT 444 (787)
Q Consensus 365 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li 444 (787)
++...+..+...+.+.|++++|...|++..+.. +.+...|..+...+.+.|++++|...+++.++.. +.+..++..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 466788899999999999999999999998763 3378889999999999999999999999999864 44678999999
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHH
Q 003913 445 NMYLNL-----------GMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNII 513 (787)
Q Consensus 445 ~~~~~~-----------g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~l 513 (787)
.+|... |++++|...|++.++..+.+...|..+...|...|++++|+..|++..+.. .+...|..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE---DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc---cchHHHHHH
Confidence 999999 999999999999998767789999999999999999999999999999874 688999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhhhhccchhhcc
Q 003913 514 LSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKR 593 (787)
Q Consensus 514 i~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~ 593 (787)
..+|...|++++|+..|++.++ .+|+. ..++..+...+...|+.++|.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~----~~P~~----------------------------~~~~~~la~~~~~~g~~~~A~ 205 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALE----QAPKD----------------------------LDLRVRYASALLLKGKAEEAA 205 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH----HSTTC----------------------------HHHHHHHHHHHTC--------
T ss_pred HHHHHHcCCHHHHHHHHHHHHH----hCCCC----------------------------hHHHHHHHHHHHHccCHHHHH
Confidence 9999999999999999999997 56652 566777778888888888887
Q ss_pred eeEE
Q 003913 594 HMIR 597 (787)
Q Consensus 594 ~~~~ 597 (787)
..++
T Consensus 206 ~~~~ 209 (217)
T 2pl2_A 206 RAAA 209 (217)
T ss_dssp ----
T ss_pred HHHH
Confidence 7654
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.44 E-value=3.1e-12 Score=129.92 Aligned_cols=255 Identities=8% Similarity=0.021 Sum_probs=199.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHH
Q 003913 334 VLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSAS--VPAYHKIIEL 411 (787)
Q Consensus 334 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~li~~ 411 (787)
.+......+...|++++|...+++..+..+. +..++..+...|...|++++|+..|++..+....|+ ..+|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 4455667788999999999999999887653 455788888999999999999999999987432222 3348889999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH-HHHHhcCCHHHH
Q 003913 412 LCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYL-ESLKNAGNIEKA 490 (787)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li-~~~~~~g~~~~A 490 (787)
+...|++++|...+++..+.. +.+..++..+...|...|++++|...|++..+..+.+..+|..+. ..|. .+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY-NKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH-TTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH-HHHHHHH
Confidence 999999999999999998854 345689999999999999999999999999887677888898888 5554 5699999
Q ss_pred HHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCC
Q 003913 491 EEIFNHMHSDQTIGVNTRSCNIILSAYLSSGD---FVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNL 567 (787)
Q Consensus 491 ~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l 567 (787)
.+.|+++.+.. +.+...|..+...+...|+ +++|...|++..+..- ..|+.
T Consensus 162 ~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~----------------------- 215 (272)
T 3u4t_A 162 DSSFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCA-PGGAK----------------------- 215 (272)
T ss_dssp HHHHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHG-GGGGG-----------------------
T ss_pred HHHHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHh-ccccc-----------------------
Confidence 99999999874 4567888888999988888 8889999998876210 11110
Q ss_pred chHHHHHHHHHHhhhhhhccchhhcceeEE--EEEccCCcccHHHHHHHHHH
Q 003913 568 SSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQ 617 (787)
Q Consensus 568 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--~~~~p~~~~~~~~l~~~y~~ 617 (787)
.......+|..+...+...|+.+.|...++ +.++|+++.+.-.+..+...
T Consensus 216 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 216 YKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-----
T ss_pred chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcc
Confidence 001124678888888999999999999988 78889988777666555443
No 48
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.43 E-value=2.1e-10 Score=116.61 Aligned_cols=216 Identities=6% Similarity=-0.015 Sum_probs=193.4
Q ss_pred HhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 003913 304 LHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAK----EGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAK 379 (787)
Q Consensus 304 ~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 379 (787)
+..+...|++++|...|++..+. -+...+..+...|.. .+++++|.+.|++..+.+ +..++..+...|..
T Consensus 13 g~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~ 86 (273)
T 1ouv_A 13 GAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYS 86 (273)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhC
Confidence 36677788999999999999883 356788888999999 999999999999999987 78899999999999
Q ss_pred ----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--
Q 003913 380 ----IGEFMKSLEIFREMQERLGSASVPAYHKIIELLCK----AEETELTESLMKEFVETGMKPLMPSYINLTNMYLN-- 449 (787)
Q Consensus 380 ----~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~-- 449 (787)
.+++++|+..|++..+.+ +..++..+...|.. .+++++|...|++..+.+ +..++..+...|..
T Consensus 87 g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~ 160 (273)
T 1ouv_A 87 GQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGR 160 (273)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS
T ss_pred CCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCC
Confidence 999999999999999875 78889999999999 999999999999999876 67788889999998
Q ss_pred --cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHc----
Q 003913 450 --LGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKN----AGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS---- 519 (787)
Q Consensus 450 --~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~---- 519 (787)
.+++++|...|++..+. .+...+..+...|.. .+++++|++.|++..+.+ +...+..+...|.+
T Consensus 161 ~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~l~~~~~~g~~~ 234 (273)
T 1ouv_A 161 GTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE----NGGGCFNLGAMQYNGEGV 234 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHTTSSS
T ss_pred CCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC----CHHHHHHHHHHHHcCCCc
Confidence 99999999999998873 357888999999999 999999999999999986 47888899999999
Q ss_pred CCCHHHHHHHHHHHHHcC
Q 003913 520 SGDFVKAEKIYDLMCLKK 537 (787)
Q Consensus 520 ~g~~~~A~~~~~~m~~~g 537 (787)
.+++++|.+.|++..+.|
T Consensus 235 ~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 235 TRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp SCCSTTHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHcC
Confidence 999999999999999854
No 49
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.43 E-value=7e-11 Score=115.75 Aligned_cols=201 Identities=10% Similarity=0.016 Sum_probs=173.8
Q ss_pred HHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003913 298 YSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAY 377 (787)
Q Consensus 298 ~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 377 (787)
..+...+..+...|++++|...|+++.+.. +.+..++..+...|...|++++|.+.++++.+.... +..++..+...|
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~ 86 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHHHH
Confidence 334444578888999999999999998753 335778999999999999999999999999987643 678899999999
Q ss_pred HHc-CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003913 378 AKI-GEFMKSLEIFREMQERLGSAS-VPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDR 455 (787)
Q Consensus 378 ~~~-g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 455 (787)
... |++++|...|+++.+.+..|+ ...|..+...+...|++++|...++++.+.. +.+..++..+..+|.+.|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHH
Confidence 999 999999999999988333343 5788899999999999999999999999864 4458899999999999999999
Q ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 003913 456 LHLAFSECLEKCR-PNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ 501 (787)
Q Consensus 456 a~~~~~~m~~~~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 501 (787)
|...++.+.+..+ .+...+..+...+...|+.++|..+++.+.+..
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 9999999988556 788899999999999999999999999998764
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.42 E-value=1.6e-11 Score=124.80 Aligned_cols=246 Identities=11% Similarity=-0.022 Sum_probs=192.3
Q ss_pred hhHHHHHHHHHHHHHcCCcc-CHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003913 274 YYLQQAEFIFHNLLTSGLEI-QKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAE 352 (787)
Q Consensus 274 g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 352 (787)
|++++|...|+++.+..... ......+...+..+...|++++|...|++..+.. +.+..++..+...|...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 79999999999999874322 2234444455688899999999999999998863 336788999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003913 353 KTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETG 432 (787)
Q Consensus 353 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g 432 (787)
+.++++.+..+. +..++..+...|.+.|++++|...|+++.+. .|+...+...+..+...|++++|...+++.....
T Consensus 98 ~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 98 EAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 999999987643 5788999999999999999999999999876 3444444555566677899999999998888753
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHH
Q 003913 433 MKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCR----PNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTR 508 (787)
Q Consensus 433 ~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~----p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~ 508 (787)
+++...+ .++..+...++.++|...+....+..+ .+..+|..+...|.+.|++++|...|++..... |+.
T Consensus 175 -~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~- 248 (275)
T 1xnf_A 175 -DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN---VHN- 248 (275)
T ss_dssp -CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---CTT-
T ss_pred -CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---chh-
Confidence 3444444 477778888899999999998875211 125789999999999999999999999999864 432
Q ss_pred HHHHHHHHHHcCCCHHHHHHHH
Q 003913 509 SCNIILSAYLSSGDFVKAEKIY 530 (787)
Q Consensus 509 t~~~li~~~~~~g~~~~A~~~~ 530 (787)
+.....++...|++++|++.+
T Consensus 249 -~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 -FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -CHHHHHHHHHHHHHHHC----
T ss_pred -HHHHHHHHHHHHHHHhhHHHH
Confidence 333355777888899888776
No 51
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.41 E-value=4.3e-11 Score=127.29 Aligned_cols=228 Identities=9% Similarity=0.032 Sum_probs=197.1
Q ss_pred hhhccCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 003913 305 HSYQDNIDKERISLLKKEMQQAGFEE-GKEVLLSVLRVCAKEGD-VEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGE 382 (787)
Q Consensus 305 ~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 382 (787)
..+...|++++|+..+++..+. .| +..+|+.+..++...|+ +++|...++++++..+. +..+|+.+..+|.+.|+
T Consensus 105 ~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~~~~~g~ 181 (382)
T 2h6f_A 105 AVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVEWLRD 181 (382)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHccC
Confidence 5667788999999999999884 55 46788999999999997 99999999999998765 78899999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHH-----
Q 003913 383 FMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLN-LGMHDRL----- 456 (787)
Q Consensus 383 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~-~g~~~~a----- 456 (787)
+++|+..|+++++.... +...|..+..++...|++++|+..++++++.. +-+..+|+.+..+|.+ .|..++|
T Consensus 182 ~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~e 259 (382)
T 2h6f_A 182 PSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLERE 259 (382)
T ss_dssp CTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHH
Confidence 99999999999987433 78899999999999999999999999999865 4468899999999999 6665777
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCC---------CHHH
Q 003913 457 HLAFSECLEKCRPNRTIYGIYLESLKNAG--NIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSG---------DFVK 525 (787)
Q Consensus 457 ~~~~~~m~~~~~p~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g---------~~~~ 525 (787)
+..|++.++..+-+...|+.+...|.+.| ++++|++.+.++ +.. +.+...+..+...|.+.| ..++
T Consensus 260 l~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~--p~~~~al~~La~~~~~~~~~~~~~~~~~~~~ 336 (382)
T 2h6f_A 260 VQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS--HSSPYLIAFLVDIYEDMLENQCDNKEDILNK 336 (382)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT--CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC--CCCHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence 58888888866778999999999999988 689999999998 443 567889999999999874 3599
Q ss_pred HHHHHHHH-HHcCCccCHHH
Q 003913 526 AEKIYDLM-CLKKYEIESAW 544 (787)
Q Consensus 526 A~~~~~~m-~~~g~~~~p~~ 544 (787)
|+++|+++ .+ .+|..
T Consensus 337 A~~~~~~l~~~----~DP~r 352 (382)
T 2h6f_A 337 ALELCEILAKE----KDTIR 352 (382)
T ss_dssp HHHHHHHHHHT----TCGGG
T ss_pred HHHHHHHHHHH----hCchh
Confidence 99999999 65 67764
No 52
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.41 E-value=1.5e-11 Score=122.25 Aligned_cols=210 Identities=14% Similarity=0.074 Sum_probs=168.4
Q ss_pred HHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003913 299 SGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYA 378 (787)
Q Consensus 299 ~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 378 (787)
..+..+..+...|++++|..+|+++.+. .+.+..++..+...+...|++++|.+.++++.+.... +..++..+...|.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~ 102 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEE-NKEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGNVYV 102 (243)
T ss_dssp -----------------CCTTHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHHHHH
Confidence 3334447788889999999999999874 2336788889999999999999999999999987643 6788999999999
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003913 379 KIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHL 458 (787)
Q Consensus 379 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 458 (787)
..|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...|.+.|++++|..
T Consensus 103 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999998864 3477889999999999999999999999998864 4568899999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHH
Q 003913 459 AFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIIL 514 (787)
Q Consensus 459 ~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li 514 (787)
.|+.+.+..+.+..+|..+...|.+.|++++|.+.|+++.+.. +.+...+..+.
T Consensus 181 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~ 234 (243)
T 2q7f_A 181 QFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ--PDHMLALHAKK 234 (243)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC--TTCHHHHHHHT
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC--cchHHHHHHHH
Confidence 9999988667789999999999999999999999999999874 44555555543
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.41 E-value=5e-12 Score=134.52 Aligned_cols=249 Identities=9% Similarity=0.024 Sum_probs=207.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003913 332 KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGE-FMKSLEIFREMQERLGSASVPAYHKIIE 410 (787)
Q Consensus 332 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~li~ 410 (787)
...|..+..++.+.|++++|.+.++++++..+. +..+|+.+..+|.+.|+ +++|+..|++....... +...|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 456778888899999999999999999998764 78899999999999997 99999999999987433 7889999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCCHHH
Q 003913 411 LLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKN-AGNIEK 489 (787)
Q Consensus 411 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~-~g~~~~ 489 (787)
++...|++++|+..|+++++.. +-+..+|..+..++.+.|++++|+..|+++++..+.+..+|+.+..+|.+ .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchH
Confidence 9999999999999999999864 44789999999999999999999999999999778899999999999999 666577
Q ss_pred H-----HHHHHHhhhCCCCCCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccc
Q 003913 490 A-----EEIFNHMHSDQTIGVNTRSCNIILSAYLSSG--DFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKP 562 (787)
Q Consensus 490 A-----~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~ 562 (787)
| ++.|++.+... +-+...|+.+...+.+.| ++++|++.+.++ + .+|+.
T Consensus 254 A~~~~el~~~~~Al~l~--P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~----~~p~~------------------ 308 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLV--PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q----PSHSS------------------ 308 (382)
T ss_dssp HHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T----TTCCC------------------
T ss_pred HHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c----cCCCC------------------
Confidence 7 58899998874 557889999999999988 689999999887 3 34432
Q ss_pred cccCCchHHHHHHHHHHhhhhhhcc---------chhhcceeEE-E--EEccCCcccHHHHHHHHHHc
Q 003913 563 VSLNLSSEQRENLIGLLLGGLCIES---------DEKRKRHMIR-F--QFNENSRMHSVLRRYLYDQY 618 (787)
Q Consensus 563 ~~~~l~~~~~~~~~~~ll~~~~~~~---------~~~~a~~~~~-~--~~~p~~~~~~~~l~~~y~~~ 618 (787)
..++..|...+...+ ..++|..+++ + +++|.....|..++..+...
T Consensus 309 ----------~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 309 ----------PYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp ----------HHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 345555666665543 2466776666 3 67888888888888777654
No 54
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.40 E-value=4.1e-11 Score=121.59 Aligned_cols=232 Identities=12% Similarity=0.052 Sum_probs=190.7
Q ss_pred HhhhccCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHc
Q 003913 304 LHSYQDNIDKERISLLKKEMQQAGFEE-GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGI--PTPAFVYKMEAYAKI 380 (787)
Q Consensus 304 ~~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~ 380 (787)
+..+...|++++|...|++..+. .| +...+..+..+|...|++++|...+++..+....+ ...+|..+...|...
T Consensus 10 a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 10 ADFLFKNNNYAEAIEVFNKLEAK--KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHT--TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence 36677899999999999999875 34 34478888889999999999999999999844222 234588899999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003913 381 GEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAF 460 (787)
Q Consensus 381 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~ 460 (787)
|++++|.+.|++..+... .+..+|..+...|...|++++|...+++..+.. +.+..++..+...+...+++++|...|
T Consensus 88 ~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 165 (272)
T 3u4t_A 88 GQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSF 165 (272)
T ss_dssp TCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988643 366789999999999999999999999988752 445777888873444456999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhhhCCCCCCC------HHHHHHHHHHHHcCCCHHHHHHHHH
Q 003913 461 SECLEKCRPNRTIYGIYLESLKNAGN---IEKAEEIFNHMHSDQTIGVN------TRSCNIILSAYLSSGDFVKAEKIYD 531 (787)
Q Consensus 461 ~~m~~~~~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~~~~~p~------~~t~~~li~~~~~~g~~~~A~~~~~ 531 (787)
+.+.+..+.+...+..+...+...|+ +++|...|++..+...-.|+ ..+|..+...|.+.|++++|.+.|+
T Consensus 166 ~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 245 (272)
T 3u4t_A 166 VKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWK 245 (272)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99998767778999999999999998 88899998887764211233 3688889999999999999999999
Q ss_pred HHHHcCCccCHH
Q 003913 532 LMCLKKYEIESA 543 (787)
Q Consensus 532 ~m~~~g~~~~p~ 543 (787)
+..+ ++|+
T Consensus 246 ~al~----~~p~ 253 (272)
T 3u4t_A 246 NILA----LDPT 253 (272)
T ss_dssp HHHH----HCTT
T ss_pred HHHh----cCcc
Confidence 9997 5554
No 55
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.38 E-value=1e-10 Score=110.93 Aligned_cols=170 Identities=15% Similarity=0.070 Sum_probs=137.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003913 366 PTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTN 445 (787)
Q Consensus 366 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~ 445 (787)
+..+|..+...|.+.|++++|++.|++..+... -+..+|..+...|.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 566777888888888888888888888776632 266778888888888888888888888877754 345677777788
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHH
Q 003913 446 MYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVK 525 (787)
Q Consensus 446 ~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~ 525 (787)
.+...++++.|...+....+..+.+..++..+...|.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK--PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc--chhhhHHHHHHHHHHHCCCHHH
Confidence 88888888888888888887667788888899999999999999999999988875 5577888999999999999999
Q ss_pred HHHHHHHHHHcCCccCHH
Q 003913 526 AEKIYDLMCLKKYEIESA 543 (787)
Q Consensus 526 A~~~~~~m~~~g~~~~p~ 543 (787)
|++.|++.++ ++|+
T Consensus 160 A~~~~~~al~----~~p~ 173 (184)
T 3vtx_A 160 AVKYFKKALE----KEEK 173 (184)
T ss_dssp HHHHHHHHHH----TTHH
T ss_pred HHHHHHHHHh----CCcc
Confidence 9999998887 6776
No 56
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.37 E-value=1.7e-10 Score=117.33 Aligned_cols=192 Identities=12% Similarity=0.110 Sum_probs=173.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHH
Q 003913 331 GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAK----IGEFMKSLEIFREMQERLGSASVPAYH 406 (787)
Q Consensus 331 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~ 406 (787)
+..++..+...|...|++++|.+.|++..+.+ +..++..+...|.. .|++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 56677888889999999999999999999854 57888889999999 999999999999999875 788899
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 003913 407 KIIELLCK----AEETELTESLMKEFVETGMKPLMPSYINLTNMYLN----LGMHDRLHLAFSECLEKCRPNRTIYGIYL 478 (787)
Q Consensus 407 ~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~m~~~~~p~~~~~~~li 478 (787)
.+...|.. .+++++|...|++..+.+ +..++..+...|.. .+++++|...|++..+.. +...+..+.
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg 153 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILG 153 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHH
Confidence 99999999 999999999999999875 78899999999999 999999999999998732 678888999
Q ss_pred HHHHh----cCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHcC
Q 003913 479 ESLKN----AGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS----SGDFVKAEKIYDLMCLKK 537 (787)
Q Consensus 479 ~~~~~----~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~g 537 (787)
..|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~ 216 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLK----DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE 216 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC
Confidence 99998 999999999999999886 67889999999999 999999999999998754
No 57
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.34 E-value=3.3e-10 Score=117.46 Aligned_cols=217 Identities=11% Similarity=0.110 Sum_probs=173.9
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-------hcCCh-------HHHHHHHHHHHh-CCCCCCHHHHHHHHHHHH
Q 003913 314 ERISLLKKEMQQAGFEEGKEVLLSVLRVCA-------KEGDV-------EDAEKTWLRLLE-SDNGIPTPAFVYKMEAYA 378 (787)
Q Consensus 314 ~~a~~l~~~m~~~g~~p~~~t~~~li~~~~-------~~g~~-------~~A~~~~~~m~~-~~~~~~~~~~~~li~~~~ 378 (787)
++|..+|++.... .+-+...|..+...+. +.|++ ++|..+|++..+ ..+. +...|..++..+.
T Consensus 33 ~~a~~~~~~al~~-~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~-~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK-NMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 5666677666653 1234556666666554 45886 899999999998 4432 5678999999999
Q ss_pred HcCChHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCCHHH
Q 003913 379 KIGEFMKSLEIFREMQERLGSAS-VP-AYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYL-NLGMHDR 455 (787)
Q Consensus 379 ~~g~~~~A~~~~~~m~~~g~~p~-~~-t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~-~~g~~~~ 455 (787)
+.|++++|.++|++..+. .|+ .. .|..+...+.+.|++++|..+|++.++.. +++...|........ ..|++++
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999874 443 33 79999999999999999999999999854 344555655444433 3699999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 003913 456 LHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGV--NTRSCNIILSAYLSSGDFVKAEKIYDLM 533 (787)
Q Consensus 456 a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p--~~~t~~~li~~~~~~g~~~~A~~~~~~m 533 (787)
|..+|+..++..+.+...|..++..+.+.|++++|..+|++......++| ....|..++..+.+.|+.++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999886677899999999999999999999999999998632455 4778999999999999999999999999
Q ss_pred HH
Q 003913 534 CL 535 (787)
Q Consensus 534 ~~ 535 (787)
.+
T Consensus 268 ~~ 269 (308)
T 2ond_A 268 FT 269 (308)
T ss_dssp HH
T ss_pred HH
Confidence 87
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.33 E-value=1.2e-11 Score=133.52 Aligned_cols=303 Identities=12% Similarity=0.001 Sum_probs=223.6
Q ss_pred HHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHH
Q 003913 299 SGLIWLHSYQDNIDKERISLLKKEMQQAGFEEG----KEVLLSVLRVCAKEGDVEDAEKTWLRLLES----DNGI-PTPA 369 (787)
Q Consensus 299 ~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~ 369 (787)
.....+..+...|++++|...|++..+.... + ..++..+...|...|++++|...+++..+. +..| ...+
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 3444557788899999999999999886321 3 356888889999999999999999887553 2111 2456
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCC--------------------hHHHHHH
Q 003913 370 FVYKMEAYAKIGEFMKSLEIFREMQERLG-SAS----VPAYHKIIELLCKAEE--------------------TELTESL 424 (787)
Q Consensus 370 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~li~~~~~~g~--------------------~~~A~~l 424 (787)
+..+...|...|++++|...|++..+... .++ ..++..+...|...|+ +++|...
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 77889999999999999999998764310 012 3478888899999999 9999999
Q ss_pred HHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 003913 425 MKEFVET----GMKP-LMPSYINLTNMYLNLGMHDRLHLAFSECLE--KCRPN----RTIYGIYLESLKNAGNIEKAEEI 493 (787)
Q Consensus 425 ~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~l 493 (787)
+.+..+. +-.| ...++..+...|...|++++|...+++..+ ...++ ..+|..+...|...|++++|...
T Consensus 170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 249 (406)
T 3sf4_A 170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 249 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 9887652 2111 245788899999999999999999999876 11222 34888999999999999999999
Q ss_pred HHHhhhCCCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCCch
Q 003913 494 FNHMHSDQTIGVN----TRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSS 569 (787)
Q Consensus 494 ~~~m~~~~~~~p~----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~ 569 (787)
+++..+...-.++ ..++..+...|...|++++|...+++..+ +.+.. -..
T Consensus 250 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~----~~~~~----------------------~~~ 303 (406)
T 3sf4_A 250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA----IAQEL----------------------NDR 303 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HHHHT----------------------TCH
T ss_pred HHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH----HHHhc----------------------CCc
Confidence 9988753200011 56888999999999999999999999876 22221 001
Q ss_pred HHHHHHHHHHhhhhhhccchhhcceeEE--EEE------ccCCcccHHHHHHHHHHchhhcCCCccc
Q 003913 570 EQRENLIGLLLGGLCIESDEKRKRHMIR--FQF------NENSRMHSVLRRYLYDQYHEWLHPSFKV 628 (787)
Q Consensus 570 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~--~~~------~p~~~~~~~~l~~~y~~~g~~~~A~~~~ 628 (787)
.....++..+...+...|+++.|...++ +.+ .+.....+..++.+|...|+...+...+
T Consensus 304 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 370 (406)
T 3sf4_A 304 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSI 370 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC----
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHHHH
Confidence 1125677788888888999998888876 333 2334557788999999999876654433
No 59
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.32 E-value=2.7e-10 Score=108.04 Aligned_cols=168 Identities=14% Similarity=0.180 Sum_probs=151.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003913 331 GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIE 410 (787)
Q Consensus 331 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 410 (787)
+..+|..+...|.+.|++++|.+.|++.++..+. +..+|..+..+|.+.|++++|...+........ -+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHH
Confidence 6778999999999999999999999999998764 788999999999999999999999999987643 36778888889
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHH
Q 003913 411 LLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKA 490 (787)
Q Consensus 411 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A 490 (787)
.+...++++.|...+.+..+.. +-+..++..+..+|.+.|++++|++.|++.++..+.+..+|..+...|.+.|++++|
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999998854 456889999999999999999999999999987778899999999999999999999
Q ss_pred HHHHHHhhhCC
Q 003913 491 EEIFNHMHSDQ 501 (787)
Q Consensus 491 ~~l~~~m~~~~ 501 (787)
++.|++..+..
T Consensus 161 ~~~~~~al~~~ 171 (184)
T 3vtx_A 161 VKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhCC
Confidence 99999999864
No 60
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.29 E-value=1.7e-10 Score=126.40 Aligned_cols=343 Identities=10% Similarity=0.008 Sum_probs=226.6
Q ss_pred HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCCh---hHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCC
Q 003913 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKF---AKCRDIFDDIINQGRVPSEMTFHILIVAYLSAP 229 (787)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~ 229 (787)
...+.|++++|.++|+...+.| +...+..|..+|...|+. ++|...|++..+. +...+..|-..+.
T Consensus 12 ~~~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~--- 80 (452)
T 3e4b_A 12 EALKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA--- 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT----CCTGGGTCC--------------------------------CHHHHHHHHH---
T ss_pred HHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH---
Confidence 4457889999999999999887 333445566667778888 8999999998864 5556666666444
Q ss_pred cCC-----CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHH
Q 003913 230 VQG-----CLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWL 304 (787)
Q Consensus 230 ~~g-----~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 304 (787)
..+ ++++|+..|++..+. | .|+ .+..+-..+....+ .. .. .++.+.+......|.. .....+.
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~-g-~~~--A~~~Lg~~y~~~~~-~~-~~-~~a~~~~~~a~~~g~~---~a~~~Lg-- 148 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFAN-G-EGN--TLIPLAMLYLQYPH-SF-PN-VNAQQQISQWQAAGYP---EAGLAQV-- 148 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHT-T-CSS--CHHHHHHHHHHCGG-GC-TT-CCHHHHHHHHHHHTCT---THHHHHH--
T ss_pred hCCCCCCcCHHHHHHHHHHHHHC-C-CHH--HHHHHHHHHHhCCC-CC-CC-HHHHHHHHHHHHCCCH---HHHHHHH--
Confidence 233 789999999999885 3 233 34444444444311 00 01 3466666666666652 2222222
Q ss_pred hhhccCC----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003913 305 HSYQDNI----DKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEG---DVEDAEKTWLRLLESDNGIPTPAFVYKMEAY 377 (787)
Q Consensus 305 ~~~~~~g----~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 377 (787)
..+...+ +.+.+..+++.... .+...+..|...|.+.| +.++|.+.|++..+.|.. +...+..|...|
T Consensus 149 ~~y~~~~~~~~~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y 223 (452)
T 3e4b_A 149 LLYRTQGTYDQHLDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVL 223 (452)
T ss_dssp HHHHHHTCGGGGHHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHH
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHH
Confidence 2222223 34555555554433 23338888888899999 999999999999999853 555556677777
Q ss_pred HHc----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003913 378 AKI----GEFMKSLEIFREMQERLGSASVPAYHKIIEL-L--CKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNL 450 (787)
Q Consensus 378 ~~~----g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~-~--~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~ 450 (787)
... +++++|++.|++.. .| +...+..|... + ...++.++|...|++..+.| +...+..|...|. .
T Consensus 224 ~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~ 295 (452)
T 3e4b_A 224 GDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-E 295 (452)
T ss_dssp TCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-H
T ss_pred hCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-c
Confidence 665 79999999999987 43 55666677666 3 46889999999999999877 6788888888887 5
Q ss_pred C-----CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHc--
Q 003913 451 G-----MHDRLHLAFSECLEKCRPNRTIYGIYLESLKN----AGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS-- 519 (787)
Q Consensus 451 g-----~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~-- 519 (787)
| ++++|...|++.. +-+...+..|...|.. ..++++|..+|++..+.| +...+..|...|..
T Consensus 296 G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g----~~~A~~~Lg~~y~~G~ 368 (452)
T 3e4b_A 296 GKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG----QNSADFAIAQLFSQGK 368 (452)
T ss_dssp CSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT----CTTHHHHHHHHHHSCT
T ss_pred CCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC----hHHHHHHHHHHHHhCC
Confidence 5 9999999999887 6678889999888877 349999999999999988 44566677777764
Q ss_pred --CCCHHHHHHHHHHHHHcCC
Q 003913 520 --SGDFVKAEKIYDLMCLKKY 538 (787)
Q Consensus 520 --~g~~~~A~~~~~~m~~~g~ 538 (787)
..+.++|..+|+...+.|.
T Consensus 369 g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 369 GTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp TBCCCHHHHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHHHHCCC
Confidence 5689999999999998773
No 61
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.28 E-value=1.6e-10 Score=124.09 Aligned_cols=299 Identities=10% Similarity=-0.002 Sum_probs=209.6
Q ss_pred cCCCHHHHHHHHHHHHHhC-CC--CCCHHHHHHHHHHHHcCCCCCChhhHHHHH-----------HHHHHHHHcCCccC-
Q 003913 230 VQGCLDEACSIYNRMIQLG-GY--QPRPSLHNSLFRALVSKPGGLSKYYLQQAE-----------FIFHNLLTSGLEIQ- 294 (787)
Q Consensus 230 ~~g~~~~A~~l~~~m~~~~-g~--~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~-----------~~~~~m~~~~~~p~- 294 (787)
+.+++++|..+++++.+.. .+ .++...|-.++..-.... .+.++.+. +.++.+.......+
T Consensus 24 ~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~----~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~ 99 (383)
T 3ulq_A 24 RRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLM----LEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTG 99 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH----HHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHH
T ss_pred HHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH----HhhcCcccccccccccchhhHHHHHHhcCCCchh
Confidence 5677888888777775531 22 223333333433221100 02334444 55555543221111
Q ss_pred -HHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-C--
Q 003913 295 -KDIYSGLIWLHSYQDNIDKERISLLKKEMQQAG-FEEG----KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNG-I-- 365 (787)
Q Consensus 295 -~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g-~~p~----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~-- 365 (787)
...|..+..+..+...|++++|...|++..+.- -.++ ..++..+...|...|++++|...+.+..+.... +
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 112233345677888999999999999987641 1122 357888999999999999999999988764211 1
Q ss_pred ---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CC
Q 003913 366 ---PTPAFVYKMEAYAKIGEFMKSLEIFREMQERLG-SAS----VPAYHKIIELLCKAEETELTESLMKEFVET----GM 433 (787)
Q Consensus 366 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~li~~~~~~g~~~~A~~l~~~m~~~----g~ 433 (787)
...+++.+...|...|++++|.+.|++..+... .++ ..++..+...|...|++++|...+++..+. +.
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 135788889999999999999999998764311 012 247888999999999999999999998872 33
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhhhCCCCC
Q 003913 434 -KPLMPSYINLTNMYLNLGMHDRLHLAFSECLEK-----CRPNRTIYGIYLESLKNAGN---IEKAEEIFNHMHSDQTIG 504 (787)
Q Consensus 434 -~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~~~~~ 504 (787)
+....++..+...|.+.|++++|...+++..+. .+.....++.+...|...|+ +++|+.++++... .+
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~---~~ 336 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML---YA 336 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC---HH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC---HH
Confidence 334678999999999999999999999998761 22223446778888889999 8889999988732 23
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 505 VNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 505 p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
.....+..+...|...|++++|...|++..+
T Consensus 337 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 337 DLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3456788899999999999999999999875
No 62
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.27 E-value=1.6e-10 Score=127.59 Aligned_cols=214 Identities=13% Similarity=0.011 Sum_probs=179.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 003913 313 KERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDV-EDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFR 391 (787)
Q Consensus 313 ~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 391 (787)
.++++..+++.... -..+...+..+..++...|++ ++|.+.|++..+.... +..+|..+...|.+.|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45555666654432 223677888888899999999 9999999999887643 67889999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhc---------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--------CCHH
Q 003913 392 EMQERLGSASVPAYHKIIELLCKA---------EETELTESLMKEFVETGMKPLMPSYINLTNMYLNL--------GMHD 454 (787)
Q Consensus 392 ~m~~~g~~p~~~t~~~li~~~~~~---------g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~--------g~~~ 454 (787)
+..+. .|+...|..+...|... |++++|...+++.++.. +-+...+..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 99876 47778888899999998 99999999999998864 44688899999999988 9999
Q ss_pred HHHHHHHHHHhcCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 003913 455 RLHLAFSECLEKCR---PNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYD 531 (787)
Q Consensus 455 ~a~~~~~~m~~~~~---p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~ 531 (787)
+|...|++..+..+ .+...|..+...|.+.|++++|++.|++..+.. +.+...+..+...+...|++++|++.+.
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD--PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999988545 689999999999999999999999999998874 5567789999999999999999988765
Q ss_pred HH
Q 003913 532 LM 533 (787)
Q Consensus 532 ~m 533 (787)
++
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 44
No 63
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.25 E-value=8.8e-11 Score=127.19 Aligned_cols=261 Identities=12% Similarity=-0.027 Sum_probs=199.9
Q ss_pred hhHHHHHHHHHHHHHcCCccCHH--HHHHHHHHhhhccCCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcC
Q 003913 274 YYLQQAEFIFHNLLTSGLEIQKD--IYSGLIWLHSYQDNIDKERISLLKKEMQQA----GFEE-GKEVLLSVLRVCAKEG 346 (787)
Q Consensus 274 g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~~~g~~~~a~~l~~~m~~~----g~~p-~~~t~~~li~~~~~~g 346 (787)
|++++|...|+++++.+.. +.. ...+...+..+...|++++|...+++..+. +-.| ...++..+...|...|
T Consensus 62 g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 140 (411)
T 4a1s_A 62 GDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMG 140 (411)
T ss_dssp TCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCC
Confidence 6999999999999887543 222 123334457788899999999999887653 2122 3456788889999999
Q ss_pred ChHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHcCC-----------------hHHHHHHHHHHHHc----CCCC
Q 003913 347 DVEDAEKTWLRLLESD-----NGIPTPAFVYKMEAYAKIGE-----------------FMKSLEIFREMQER----LGSA 400 (787)
Q Consensus 347 ~~~~A~~~~~~m~~~~-----~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~m~~~----g~~p 400 (787)
++++|...+++..+.. ......++..+...|...|+ +++|.+.+++..+. +..+
T Consensus 141 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~ 220 (411)
T 4a1s_A 141 RFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRG 220 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred CHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 9999999999877641 11134577888999999999 99999999886542 1111
Q ss_pred -CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--C---
Q 003913 401 -SVPAYHKIIELLCKAEETELTESLMKEFVETGM-KPL----MPSYINLTNMYLNLGMHDRLHLAFSECLEKCR--P--- 469 (787)
Q Consensus 401 -~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~--p--- 469 (787)
...++..+...|...|++++|...+++..+..- .++ ..++..+...|...|++++|...|++..+..+ .
T Consensus 221 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 300 (411)
T 4a1s_A 221 AQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGERE 300 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHH
Confidence 234788888999999999999999999876311 112 34788999999999999999999999876211 1
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC----CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 470 -NRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQT----IGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 470 -~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~----~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
...++..+...|...|++++|.+.|++...... ......+|..+...|.+.|++++|..+|++..+
T Consensus 301 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 301 VEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 256888999999999999999999998876410 011245888899999999999999999999987
No 64
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.24 E-value=1.4e-11 Score=127.67 Aligned_cols=247 Identities=12% Similarity=0.038 Sum_probs=139.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCC
Q 003913 368 PAFVYKMEAYAKIGEFMKSLEIFREMQER-------LGSASVPAYHKIIELLCKAEETELTESLMKEFVET------GMK 434 (787)
Q Consensus 368 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~ 434 (787)
.++..+...|...|++++|..+|+++.+. .......++..+...|...|++++|...+++..+. +-.
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34444555555555555555555554431 11112334555555555556666666555555542 111
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-----
Q 003913 435 P-LMPSYINLTNMYLNLGMHDRLHLAFSECLEKC--------RPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSD----- 500 (787)
Q Consensus 435 p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~--------~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----- 500 (787)
| ...++..+...|...|++++|...|+++.+.. +....++..+...|...|++++|+++|+++.+.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 2 24556666677777777777777777665421 223456788888888889999999888888764
Q ss_pred -CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHH
Q 003913 501 -QTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLL 579 (787)
Q Consensus 501 -~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~l 579 (787)
+.-+....++..+...|...|++++|..+|+++.+ ..+... +..... ...........+..+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----~~~~~~--~~~~~~-----------~~~~~~~~~~~~~~~ 250 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT----RAHERE--FGSVDD-----------ENKPIWMHAEEREEC 250 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HHHHHH--HC-----------------CCHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHHHhc--CCCCCc-----------chHHHHHHHHHHHHh
Confidence 10122356788889999999999999999999886 222210 000000 000000113344444
Q ss_pred hhhhhhccchhhcceeEE--EEEccCCcccHHHHHHHHHHchhhcCCCccccCC
Q 003913 580 LGGLCIESDEKRKRHMIR--FQFNENSRMHSVLRRYLYDQYHEWLHPSFKVSDG 631 (787)
Q Consensus 580 l~~~~~~~~~~~a~~~~~--~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~~ 631 (787)
...+...+.+..+...++ ....|.....+..++.+|...|++++|...+.++
T Consensus 251 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 304 (311)
T 3nf1_A 251 KGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAA 304 (311)
T ss_dssp -------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 555555566666666666 4556777888899999999999999987766543
No 65
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.24 E-value=2.9e-10 Score=125.46 Aligned_cols=187 Identities=10% Similarity=0.015 Sum_probs=165.3
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003913 347 DVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEF-MKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLM 425 (787)
Q Consensus 347 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~ 425 (787)
.++++.+.+++...... .+...+..+...|...|++ ++|++.|++..+... -+...|..+...|...|++++|...|
T Consensus 83 ~~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 35677777777665543 4788899999999999999 999999999988632 35889999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc--------CCHH
Q 003913 426 KEFVETGMKPLMPSYINLTNMYLNL---------GMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNA--------GNIE 488 (787)
Q Consensus 426 ~~m~~~g~~p~~~t~~~li~~~~~~---------g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~--------g~~~ 488 (787)
++.++. .|+..++..+..+|... |++++|...|++.++..+.+...|..+..+|... |+++
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 999974 57889999999999999 9999999999999987778899999999999999 9999
Q ss_pred HHHHHHHHhhhCCCCC---CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHH
Q 003913 489 KAEEIFNHMHSDQTIG---VNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESA 543 (787)
Q Consensus 489 ~A~~l~~~m~~~~~~~---p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~ 543 (787)
+|++.|++..+.. + -+...|..+..+|...|++++|++.|++..+ .+|+
T Consensus 239 ~A~~~~~~al~~~--p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----l~p~ 290 (474)
T 4abn_A 239 QALSAYAQAEKVD--RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA----LDPA 290 (474)
T ss_dssp HHHHHHHHHHHHC--GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTT
T ss_pred HHHHHHHHHHHhC--CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCC
Confidence 9999999999864 3 4889999999999999999999999999987 5555
No 66
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.24 E-value=7.9e-11 Score=127.53 Aligned_cols=271 Identities=14% Similarity=-0.012 Sum_probs=203.5
Q ss_pred HHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhC----CC-CCCHHHH
Q 003913 300 GLIWLHSYQDNIDKERISLLKKEMQQAGFEEGK----EVLLSVLRVCAKEGDVEDAEKTWLRLLES----DN-GIPTPAF 370 (787)
Q Consensus 300 ~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~~~~~~~ 370 (787)
.+..+..+...|++++|...|++..+.... +. .++..+...|...|++++|...+++..+. +. .....++
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 334457788899999999999999886322 22 46888899999999999999999987764 11 1234677
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCC-----------------hHHHHHHHHHH
Q 003913 371 VYKMEAYAKIGEFMKSLEIFREMQER----LGSA-SVPAYHKIIELLCKAEE-----------------TELTESLMKEF 428 (787)
Q Consensus 371 ~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~g~-----------------~~~A~~l~~~m 428 (787)
..+...|...|++++|...|++..+. +-.| ...++..+...|...|+ +++|...+++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 88999999999999999999987643 1111 24478888999999999 99999999887
Q ss_pred HHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 003913 429 VET----GMKP-LMPSYINLTNMYLNLGMHDRLHLAFSECLEKC--RPN----RTIYGIYLESLKNAGNIEKAEEIFNHM 497 (787)
Q Consensus 429 ~~~----g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~--~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m 497 (787)
.+. +-.+ ...++..+...|...|++++|...+++..+.. .++ ..++..+...|...|++++|...|++.
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 652 2111 24578889999999999999999999987621 122 237889999999999999999999988
Q ss_pred hhCCC----CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCCchHHHH
Q 003913 498 HSDQT----IGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRE 573 (787)
Q Consensus 498 ~~~~~----~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~ 573 (787)
.+... ......++..+...|...|++++|..++++..+ ..+.. -......
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----~~~~~----------------------~~~~~~~ 343 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA----IAQEL----------------------GDRIGEA 343 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HHHHH----------------------TCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHHHC----------------------CChHHHH
Confidence 76420 001257888999999999999999999999886 33221 0001124
Q ss_pred HHHHHHhhhhhhccchhhcceeEE
Q 003913 574 NLIGLLLGGLCIESDEKRKRHMIR 597 (787)
Q Consensus 574 ~~~~~ll~~~~~~~~~~~a~~~~~ 597 (787)
.++..+...+...|+.+.|...++
T Consensus 344 ~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 344 RACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHH
Confidence 567777778888888887776654
No 67
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.23 E-value=4.2e-10 Score=121.26 Aligned_cols=277 Identities=13% Similarity=-0.008 Sum_probs=206.6
Q ss_pred CCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHH--HHHHHHHHhhhccCCCHHHHHHHHHHHHHc---
Q 003913 252 PRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKD--IYSGLIWLHSYQDNIDKERISLLKKEMQQA--- 326 (787)
Q Consensus 252 pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~~~g~~~~a~~l~~~m~~~--- 326 (787)
+....+...-..+... |++++|...|+++++.+.. +.. .......+..+...|++++|...+++....
T Consensus 7 ~~~~~l~~~g~~~~~~------g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 79 (406)
T 3sf4_A 7 ASCLELALEGERLCKS------GDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLART 79 (406)
T ss_dssp CCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 3344444444445554 6999999999999887543 222 223334447888899999999999886543
Q ss_pred -CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHHcCC-----------------
Q 003913 327 -GFEEG-KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNG-IP----TPAFVYKMEAYAKIGE----------------- 382 (787)
Q Consensus 327 -g~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~----------------- 382 (787)
+-.|. ..++..+...|...|++++|...+++..+.... .+ ..++..+...|...|+
T Consensus 80 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a 159 (406)
T 3sf4_A 80 IGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEV 159 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHH
T ss_pred ccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhH
Confidence 22222 446788889999999999999999987764211 12 3478888999999999
Q ss_pred ---hHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHh
Q 003913 383 ---FMKSLEIFREMQER----LGSA-SVPAYHKIIELLCKAEETELTESLMKEFVETG-MKPL----MPSYINLTNMYLN 449 (787)
Q Consensus 383 ---~~~A~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~----~~t~~~li~~~~~ 449 (787)
+++|.+.+++.... +..| ...++..+...|...|++++|...+++..+.. -.++ ..++..+...|..
T Consensus 160 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 239 (406)
T 3sf4_A 160 RDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF 239 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 99999999886532 1111 13468888999999999999999999987631 0122 3488899999999
Q ss_pred cCCHHHHHHHHHHHHhcC--CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC----HHHHHHHHHHHHc
Q 003913 450 LGMHDRLHLAFSECLEKC--RPN----RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVN----TRSCNIILSAYLS 519 (787)
Q Consensus 450 ~g~~~~a~~~~~~m~~~~--~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~----~~t~~~li~~~~~ 519 (787)
.|++++|...+++..+.. .++ ..++..+...|...|++++|...|++..+...-.++ ..++..+...|..
T Consensus 240 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 319 (406)
T 3sf4_A 240 LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTA 319 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 999999999999987621 122 568889999999999999999999988764200112 5688899999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 003913 520 SGDFVKAEKIYDLMCL 535 (787)
Q Consensus 520 ~g~~~~A~~~~~~m~~ 535 (787)
.|++++|...|++..+
T Consensus 320 ~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 320 LGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999999999875
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.23 E-value=2.1e-10 Score=119.82 Aligned_cols=272 Identities=13% Similarity=-0.001 Sum_probs=198.9
Q ss_pred HHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCC-CC
Q 003913 297 IYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEG-----KEVLLSVLRVCAKEGDVEDAEKTWLRLLES----DNG-IP 366 (787)
Q Consensus 297 ~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~-----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~ 366 (787)
....+..+..+...|++++|...|++..+.. |+ ...+..+...+...|++++|.+.+++..+. +.. ..
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 82 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHH
Confidence 3444555677888999999999999998863 33 357788889999999999999999887653 111 12
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCC--------------------hHHH
Q 003913 367 TPAFVYKMEAYAKIGEFMKSLEIFREMQERLG-SAS----VPAYHKIIELLCKAEE--------------------TELT 421 (787)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~li~~~~~~g~--------------------~~~A 421 (787)
..++..+...|...|++++|...|++..+... .++ ..++..+...+...|+ +++|
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 45677889999999999999999998754311 112 3378888899999999 9999
Q ss_pred HHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCC----HHHHHHHHHHHHhcCCHHHH
Q 003913 422 ESLMKEFVET----GMKP-LMPSYINLTNMYLNLGMHDRLHLAFSECLEK--CRPN----RTIYGIYLESLKNAGNIEKA 490 (787)
Q Consensus 422 ~~l~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~--~~p~----~~~~~~li~~~~~~g~~~~A 490 (787)
...+++..+. +-.+ ...++..+...|...|++++|...+++..+. ..++ ..++..+...|...|++++|
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9998887642 2111 2457888899999999999999999998751 1122 33788899999999999999
Q ss_pred HHHHHHhhhCCCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccC
Q 003913 491 EEIFNHMHSDQTIGVN----TRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLN 566 (787)
Q Consensus 491 ~~l~~~m~~~~~~~p~----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~ 566 (787)
.+.+++......-.++ ..++..+...|...|++++|...+++..+ ..+..
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~----~~~~~---------------------- 296 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA----IAQEL---------------------- 296 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HHHHH----------------------
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH----HHHhc----------------------
Confidence 9999988753100011 56888899999999999999999999876 22221
Q ss_pred CchHHHHHHHHHHhhhhhhccchhhcceeE
Q 003913 567 LSSEQRENLIGLLLGGLCIESDEKRKRHMI 596 (787)
Q Consensus 567 l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 596 (787)
-.......++..+...+...|+.+.|...+
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFA 326 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 000112446666777777777777766544
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.23 E-value=1.4e-09 Score=112.79 Aligned_cols=226 Identities=9% Similarity=0.021 Sum_probs=180.1
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-------cCCh-------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003913 349 EDAEKTWLRLLESDNGIPTPAFVYKMEAYAK-------IGEF-------MKSLEIFREMQERLGSASVPAYHKIIELLCK 414 (787)
Q Consensus 349 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 414 (787)
++|..+|++.++..+. +...|..++..+.. .|++ ++|..+|++..+.-.+-+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~p~-~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 6888899999887543 77888888887764 5886 9999999999873122356689999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-hcCCHHHHH
Q 003913 415 AEETELTESLMKEFVETGMKPL-MP-SYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLK-NAGNIEKAE 491 (787)
Q Consensus 415 ~g~~~~A~~l~~~m~~~g~~p~-~~-t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~-~~g~~~~A~ 491 (787)
.|++++|..+|+++++ +.|+ .. +|..++..+.+.|++++|..+|++.++..+.+...|........ ..|++++|.
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999998 4554 33 89999999999999999999999999865666677765554433 369999999
Q ss_pred HHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCCchHH
Q 003913 492 EIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQ 571 (787)
Q Consensus 492 ~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~ 571 (787)
++|++..+.. +-+...|..++..+.+.|++++|..+|++.++.. ..+|+.
T Consensus 190 ~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-~l~p~~--------------------------- 239 (308)
T 2ond_A 190 KIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG-SLPPEK--------------------------- 239 (308)
T ss_dssp HHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS-SSCGGG---------------------------
T ss_pred HHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc-CCCHHH---------------------------
Confidence 9999998873 5578999999999999999999999999999742 123320
Q ss_pred HHHHHHHHhhhhhhccchhhcceeEE--EEEccCCccc
Q 003913 572 RENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSRMH 607 (787)
Q Consensus 572 ~~~~~~~ll~~~~~~~~~~~a~~~~~--~~~~p~~~~~ 607 (787)
...+|..++......|+.+.+..+++ ++..|++...
T Consensus 240 ~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~ 277 (308)
T 2ond_A 240 SGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEG 277 (308)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccccc
Confidence 15678888888888898888887776 6667765543
No 70
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.21 E-value=2.2e-10 Score=118.42 Aligned_cols=238 Identities=14% Similarity=0.106 Sum_probs=160.7
Q ss_pred HHHHHHHHHhhhccCCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC------C
Q 003913 296 DIYSGLIWLHSYQDNIDKERISLLKKEMQQA-------GFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLES------D 362 (787)
Q Consensus 296 ~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~-------g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~------~ 362 (787)
........+..+...|++++|..+++++.+. .......++..+...|...|++++|...+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3334444457788888899999998888763 12223456778888888899999999988888764 2
Q ss_pred C-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---
Q 003913 363 N-GIPTPAFVYKMEAYAKIGEFMKSLEIFREMQER------LGSA-SVPAYHKIIELLCKAEETELTESLMKEFVET--- 431 (787)
Q Consensus 363 ~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~--- 431 (787)
- .....++..+...|...|++++|...|++..+. +..| ...++..+...+...|++++|..+++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 123456777888888899999999999887754 2222 3456778888888889999999988888764
Q ss_pred ---CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCC-------CHHHHHHHHHHHHhcCCHHHHHH
Q 003913 432 ---GMKP-LMPSYINLTNMYLNLGMHDRLHLAFSECLEK--------CRP-------NRTIYGIYLESLKNAGNIEKAEE 492 (787)
Q Consensus 432 ---g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~--------~~p-------~~~~~~~li~~~~~~g~~~~A~~ 492 (787)
+-.| ...++..+..+|...|++++|...++++.+. ..+ ....+..+...+...+.+.+|..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 2123 2457788888888899999999988888751 111 12233333444455566666667
Q ss_pred HHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 493 IFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 493 l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
.++...... +.+..+|..+...|.+.|++++|.++|++.++
T Consensus 266 ~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKVDS--PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --------C--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcCCCC--chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777766653 45678899999999999999999999999875
No 71
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.21 E-value=3e-10 Score=118.53 Aligned_cols=261 Identities=13% Similarity=0.003 Sum_probs=197.9
Q ss_pred hhHHHHHHHHHHHHHcCCccCHH--HHHHHHHHhhhccCCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcC
Q 003913 274 YYLQQAEFIFHNLLTSGLEIQKD--IYSGLIWLHSYQDNIDKERISLLKKEMQQA----GFEE-GKEVLLSVLRVCAKEG 346 (787)
Q Consensus 274 g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~~~g~~~~a~~l~~~m~~~----g~~p-~~~t~~~li~~~~~~g 346 (787)
|++++|...|+++.+.... +.. .......+..+...|++++|...+++.... +-.| ...++..+...+...|
T Consensus 19 g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 97 (338)
T 3ro2_A 19 GDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG 97 (338)
T ss_dssp TCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHcc
Confidence 6999999999999887543 221 222333447788899999999999876542 2222 2456788889999999
Q ss_pred ChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHHcCC--------------------hHHHHHHHHHHHHc----C
Q 003913 347 DVEDAEKTWLRLLESDNG-IP----TPAFVYKMEAYAKIGE--------------------FMKSLEIFREMQER----L 397 (787)
Q Consensus 347 ~~~~A~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~~~----g 397 (787)
++++|...+++..+.... ++ ..++..+...|...|+ +++|.+.+++.... +
T Consensus 98 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~ 177 (338)
T 3ro2_A 98 NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALG 177 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999987664211 12 3477888999999999 99999999886532 1
Q ss_pred CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CC
Q 003913 398 GSA-SVPAYHKIIELLCKAEETELTESLMKEFVETGM-KPL----MPSYINLTNMYLNLGMHDRLHLAFSECLEKC--RP 469 (787)
Q Consensus 398 ~~p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~--~p 469 (787)
..+ ...++..+...+...|++++|...+++..+..- .++ ..++..+...|...|++++|...+++..+.. ..
T Consensus 178 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (338)
T 3ro2_A 178 DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 257 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc
Confidence 111 234688888999999999999999999875210 112 3478899999999999999999999987621 12
Q ss_pred C----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC----CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 470 N----RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ----TIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 470 ~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~----~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
+ ..++..+...|...|++++|...+++..+.. .......++..+...|.+.|++++|...+++..+
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 258 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 2 5678889999999999999999999886531 0111145888899999999999999999999986
No 72
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.21 E-value=1.1e-09 Score=103.21 Aligned_cols=164 Identities=13% Similarity=0.045 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003913 368 PAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMY 447 (787)
Q Consensus 368 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~ 447 (787)
..|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...|
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345556666667777777777776665432 2355666667777777777777777777776643 34566777777777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 003913 448 LNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAE 527 (787)
Q Consensus 448 ~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~ 527 (787)
...|++++|...++.+.+..+.+...+..+...|...|++++|.+.++++.+.. +.+..+|..+...|...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCHHHHH
Confidence 778888888888877777556677888888888888888888888888887764 456778888888888888888888
Q ss_pred HHHHHHHH
Q 003913 528 KIYDLMCL 535 (787)
Q Consensus 528 ~~~~~m~~ 535 (787)
..+++..+
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888775
No 73
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.18 E-value=2.2e-07 Score=105.49 Aligned_cols=374 Identities=7% Similarity=0.029 Sum_probs=230.1
Q ss_pred HHhhcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCC---hhHHHHHHHHHHHCC-CCCCHhHHHHHHHHHhcC
Q 003913 153 HCMRIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERK---FAKCRDIFDDIINQG-RVPSEMTFHILIVAYLSA 228 (787)
Q Consensus 153 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~f~~m~~~g-~~pd~~ty~~li~~~~~~ 228 (787)
.+.+.+.++.+..+|+.+... ++.....|...+..-.+.|. ++.+..+|++..... ..|++..|..-+.-..
T Consensus 75 ~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~-- 150 (679)
T 4e6h_A 75 HHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVR-- 150 (679)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHH--
T ss_pred HHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--
Confidence 344567889999999999987 57788889998998888888 999999999988763 2378888887766544
Q ss_pred CcCCC--------HHHHHHHHHHHHHhCCC-CCCH-HHHHHHHHHHHcCCCCC---ChhhHHHHHHHHHHHHHcCCccCH
Q 003913 229 PVQGC--------LDEACSIYNRMIQLGGY-QPRP-SLHNSLFRALVSKPGGL---SKYYLQQAEFIFHNLLTSGLEIQK 295 (787)
Q Consensus 229 ~~~g~--------~~~A~~l~~~m~~~~g~-~pd~-~t~~~ll~~~~~~~~~~---~~g~~~~A~~~~~~m~~~~~~p~~ 295 (787)
+.+. .+.+.++|+.....-|. .|+. ..|...+.-.....+.. .+++++.+..+|+.++........
T Consensus 151 -~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~ 229 (679)
T 4e6h_A 151 -KKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLE 229 (679)
T ss_dssp -HHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHH
T ss_pred -HhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHH
Confidence 2222 23455788877665466 6653 56666665433211000 113567778888877743221111
Q ss_pred HHHHHHHHH-hhhcc----------CCCH---------------------------------------------------
Q 003913 296 DIYSGLIWL-HSYQD----------NIDK--------------------------------------------------- 313 (787)
Q Consensus 296 ~~~~~li~~-~~~~~----------~g~~--------------------------------------------------- 313 (787)
.++...... ..... ..++
T Consensus 230 ~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi 309 (679)
T 4e6h_A 230 SMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWI 309 (679)
T ss_dssp HHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHH
Confidence 121111000 00000 0001
Q ss_pred ----------------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH-HHHHHHHhCCCCCCHHHHHHHHHH
Q 003913 314 ----------------ERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAE-KTWLRLLESDNGIPTPAFVYKMEA 376 (787)
Q Consensus 314 ----------------~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~-~~~~~m~~~~~~~~~~~~~~li~~ 376 (787)
.++..+|++.... +.-+...|...+..+...|+.++|. ++|++.....+ .+...|-..+..
T Consensus 310 ~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P-~s~~Lwl~~a~~ 387 (679)
T 4e6h_A 310 RWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIP-NSAVLAFSLSEQ 387 (679)
T ss_dssp HHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 1122233333332 1223334444444455667777775 88887776432 355566677777
Q ss_pred HHHcCChHHHHHHHHHHHHcC---------CCCC------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCC
Q 003913 377 YAKIGEFMKSLEIFREMQERL---------GSAS------------VPAYHKIIELLCKAEETELTESLMKEFVET-GMK 434 (787)
Q Consensus 377 ~~~~g~~~~A~~~~~~m~~~g---------~~p~------------~~t~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~ 434 (787)
.-+.|++++|.++|+++.+.. ..|+ ...|...+....+.|..+.|..+|.+.++. + .
T Consensus 388 ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~ 466 (679)
T 4e6h_A 388 YELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-L 466 (679)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-G
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-C
Confidence 778888888888888776531 0131 235777777777778888888888888765 2 1
Q ss_pred CCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC---CHHHH
Q 003913 435 PLMPSYINLTNMYLNLG-MHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGV---NTRSC 510 (787)
Q Consensus 435 p~~~t~~~li~~~~~~g-~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p---~~~t~ 510 (787)
.....|...+..-.+.+ +.+.|..+|+..++.++.+...|...++.....|+.+.|..+|++..... ++ ....|
T Consensus 467 ~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~--~~~~~~~~lw 544 (679)
T 4e6h_A 467 VTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI--SDSHLLKMIF 544 (679)
T ss_dssp SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS--SSTTHHHHHH
T ss_pred CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc--CCHHHHHHHH
Confidence 12333433333333433 47888888888877666677777788887777888888888888887763 21 34677
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHc
Q 003913 511 NIILSAYLSSGDFVKAEKIYDLMCLK 536 (787)
Q Consensus 511 ~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (787)
...+.--.+.|+.+.+.++.++|.+.
T Consensus 545 ~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 545 QKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777777888888888888888763
No 74
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.17 E-value=3.9e-10 Score=120.92 Aligned_cols=293 Identities=11% Similarity=0.078 Sum_probs=201.7
Q ss_pred hhhccCCCHHHHHHHHHHHHHc--CCCCCH--HHHHHHHHHHH--hcCChHHHH-----------HHHHHHHhCCCCCCH
Q 003913 305 HSYQDNIDKERISLLKKEMQQA--GFEEGK--EVLLSVLRVCA--KEGDVEDAE-----------KTWLRLLESDNGIPT 367 (787)
Q Consensus 305 ~~~~~~g~~~~a~~l~~~m~~~--g~~p~~--~t~~~li~~~~--~~g~~~~A~-----------~~~~~m~~~~~~~~~ 367 (787)
+.+.+.+++++|..+++++.+. .++.|. ..|-.++..-. ..+.++.+. +.++.+..... +.
T Consensus 20 ~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~--~~ 97 (383)
T 3ulq_A 20 YMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQA--RL 97 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTH--HH
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCC--Cc
Confidence 4456678899999999888664 233343 34444443322 234444444 66666544221 11
Q ss_pred HH------HHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCC
Q 003913 368 PA------FVYKMEAYAKIGEFMKSLEIFREMQERL-GSAS----VPAYHKIIELLCKAEETELTESLMKEFVET--GMK 434 (787)
Q Consensus 368 ~~------~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~----~~t~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~ 434 (787)
.. +......+...|++++|...|++..+.- -.+| ..+|..+...|...|++++|...+.+..+. ...
T Consensus 98 ~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~ 177 (383)
T 3ulq_A 98 TGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHE 177 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCS
T ss_pred hhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc
Confidence 11 2225667888999999999999987531 0122 357888999999999999999999998762 111
Q ss_pred ---C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhh-----
Q 003913 435 ---P-LMPSYINLTNMYLNLGMHDRLHLAFSECLEK--CRPN----RTIYGIYLESLKNAGNIEKAEEIFNHMHS----- 499 (787)
Q Consensus 435 ---p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~----- 499 (787)
+ ...+++.+...|...|++++|...|.+.++. ..++ ..++..+...|...|++++|++.|++..+
T Consensus 178 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 257 (383)
T 3ulq_A 178 AYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEES 257 (383)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence 1 2467889999999999999999999998761 1122 24788999999999999999999999887
Q ss_pred CCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCc-cCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHH
Q 003913 500 DQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYE-IESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGL 578 (787)
Q Consensus 500 ~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 578 (787)
.. .+....++..+...|.+.|++++|...+++..+..-. .+|.. ...+..
T Consensus 258 ~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----------------------------~~~~~~ 308 (383)
T 3ulq_A 258 NI-LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIY----------------------------LSEFEF 308 (383)
T ss_dssp TC-GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH----------------------------HHHHHH
T ss_pred cc-chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH----------------------------HHHHHH
Confidence 32 1335678999999999999999999999998862100 02221 222445
Q ss_pred Hhhhhhhccc---hhhcceeEE-EEEccCCcccHHHHHHHHHHchhhcCCCccc
Q 003913 579 LLGGLCIESD---EKRKRHMIR-FQFNENSRMHSVLRRYLYDQYHEWLHPSFKV 628 (787)
Q Consensus 579 ll~~~~~~~~---~~~a~~~~~-~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~ 628 (787)
|...+...|+ ++.|...++ ....|.....+..|+.+|...|++++|...+
T Consensus 309 l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~ 362 (383)
T 3ulq_A 309 LKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYF 362 (383)
T ss_dssp HHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5556666665 455554444 3334445557788999999999999987666
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.16 E-value=3.7e-09 Score=99.59 Aligned_cols=165 Identities=16% Similarity=0.066 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003913 333 EVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELL 412 (787)
Q Consensus 333 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 412 (787)
..+..+...+...|++++|...++++.+.... +..++..+...|...|++++|...++++.+.. +.+...|..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 45667778888999999999999988876543 67888889999999999999999999988763 34678888899999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003913 413 CKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEE 492 (787)
Q Consensus 413 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 492 (787)
...|++++|...++++.+.. +.+..++..+..+|...|++++|...++.+.+..+.+..++..+...|...|++++|.+
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999998864 45788899999999999999999999999988667788999999999999999999999
Q ss_pred HHHHhhhC
Q 003913 493 IFNHMHSD 500 (787)
Q Consensus 493 l~~~m~~~ 500 (787)
.++++.+.
T Consensus 166 ~~~~~~~~ 173 (186)
T 3as5_A 166 HFKKANEL 173 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 99998764
No 76
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.14 E-value=9.3e-09 Score=112.62 Aligned_cols=318 Identities=15% Similarity=0.120 Sum_probs=208.4
Q ss_pred HHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCH---HHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003913 186 LADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCL---DEACSIYNRMIQLGGYQPRPSLHNSLFR 262 (787)
Q Consensus 186 li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~---~~A~~l~~~m~~~~g~~pd~~t~~~ll~ 262 (787)
+...+.+.|++++|.++|++..+.| +...+..|-..|. ..|+. ++|+..|++..+ . .| ..+..+-.
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~---~~g~~~d~~~A~~~~~~A~~--~-~~--~A~~~Lg~ 77 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQV---GTRDPAQIKQAEATYRAAAD--T-SP--RAQARLGR 77 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC------------------------------------CHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH---ccCCCCCHHHHHHHHHHHHh--C-CH--HHHHHHHH
Confidence 5566778999999999999998876 4445555666666 56777 999999999875 2 33 33344433
Q ss_pred HHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccC-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003913 263 ALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDN-IDKERISLLKKEMQQAGFEEGKEVLLSVLRV 341 (787)
Q Consensus 263 ~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~-g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~ 341 (787)
.+... +....++.++|...|++..+.|... .+..+..++..... ..-.++.+.+......|. ......+...
T Consensus 78 ~~~~~-~~~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~ 150 (452)
T 3e4b_A 78 LLAAK-PGATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLL 150 (452)
T ss_dssp HHHTC---CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHH
T ss_pred HHHhC-CCCCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHH
Confidence 34332 2222358999999999999988643 22222211111111 111445666666665554 4456667777
Q ss_pred HHhcCChHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003913 342 CAKEGDVED----AEKTWLRLLESDNGIPTPAFVYKMEAYAKIG---EFMKSLEIFREMQERLGSASVPAYHKIIELLCK 414 (787)
Q Consensus 342 ~~~~g~~~~----A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 414 (787)
|...+.+++ +..+++..... +...+..|...|.+.| +.++|++.|++..+.|.. +...+..|...|..
T Consensus 151 y~~~~~~~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~ 225 (452)
T 3e4b_A 151 YRTQGTYDQHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGD 225 (452)
T ss_dssp HHHHTCGGGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTC
T ss_pred HHcCCCcccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhC
Confidence 777775544 44444444333 3348888999999999 999999999999988643 55555667777755
Q ss_pred c----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC--
Q 003913 415 A----EETELTESLMKEFVETGMKPLMPSYINLTNM-Y--LNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAG-- 485 (787)
Q Consensus 415 ~----g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~-~--~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g-- 485 (787)
. ++.++|...|++.. .| +...+..|... | ...+++++|...|++..+. -+...+..|...|. .|
T Consensus 226 g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g 298 (452)
T 3e4b_A 226 ATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKW 298 (452)
T ss_dssp GGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSS
T ss_pred CCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCC
Confidence 5 69999999999987 44 45677777777 4 4689999999999998872 27888889988888 56
Q ss_pred ---CHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHcCC
Q 003913 486 ---NIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS----SGDFVKAEKIYDLMCLKKY 538 (787)
Q Consensus 486 ---~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~g~ 538 (787)
++++|.++|++.. .| +...+..|...|.. ..++++|..+|++..+.|.
T Consensus 299 ~~~d~~~A~~~~~~Aa-~g----~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 299 VPADAKAAEAHFEKAV-GR----EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp SCCCHHHHHHHHHTTT-TT----CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred CCCCHHHHHHHHHHHh-CC----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 9999999999999 66 77888888888876 4499999999999998764
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.12 E-value=5.6e-09 Score=111.65 Aligned_cols=233 Identities=10% Similarity=0.034 Sum_probs=179.8
Q ss_pred HHHHHhhhccCCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-C-----CHH
Q 003913 300 GLIWLHSYQDNIDKERISLLKKEMQQAGF-EEG----KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNG-I-----PTP 368 (787)
Q Consensus 300 ~li~~~~~~~~g~~~~a~~l~~~m~~~g~-~p~----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~-----~~~ 368 (787)
.+..+..+...|++++|...|++..+.-- .++ ..++..+..+|...|+++.|...+.+..+.... + ...
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 34445667889999999999999876421 123 446788899999999999999999887753111 1 245
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCCHHH
Q 003913 369 AFVYKMEAYAKIGEFMKSLEIFREMQER----LGSA-SVPAYHKIIELLCKAEETELTESLMKEFVET----GMKPLMPS 439 (787)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~~t 439 (787)
+++.+...|...|++++|.+.|++..+. +..+ ...+++.+...|...|++++|...+++..+. +.+....+
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 7788999999999999999999987652 1111 1346888899999999999999999998871 22333778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhhhCCCCCCCHHHHH
Q 003913 440 YINLTNMYLNLGMHDRLHLAFSECLEK-----CRPNRTIYGIYLESLKNAGN---IEKAEEIFNHMHSDQTIGVNTRSCN 511 (787)
Q Consensus 440 ~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~~~~~p~~~t~~ 511 (787)
+..+...|.+.|++++|...+++..+. .+.....++.+...|...|+ +++|+..+++... .+.....+.
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~---~~~~~~~~~ 340 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL---HAYIEACAR 340 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC---HHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC---hhHHHHHHH
Confidence 999999999999999999999998862 22234566777777888888 8889888887432 223445777
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 512 IILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 512 ~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
.+...|...|++++|...|++..+
T Consensus 341 ~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 341 SAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 899999999999999999999885
No 78
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.12 E-value=2.6e-09 Score=122.80 Aligned_cols=165 Identities=10% Similarity=0.072 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003913 367 TPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNM 446 (787)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~ 446 (787)
..+|+.|...|.+.|++++|++.|++..+... -+..+|+.+..+|.+.|++++|...|++.++.. +-+..+|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 34555566666666666666666666555421 134556666666666666666666666665532 2235566666666
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHH
Q 003913 447 YLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKA 526 (787)
Q Consensus 447 ~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A 526 (787)
|.+.|++++|++.|++.++..+-+..+|+.|...|.+.|++++|++.|++..+.. +-+...|..+...|...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~--P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK--PDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHhhhhhHHHhcccHHHH
Confidence 6666666666666666665445566666666666666677777777776666653 33456666666666667776666
Q ss_pred HHHHHHHHH
Q 003913 527 EKIYDLMCL 535 (787)
Q Consensus 527 ~~~~~~m~~ 535 (787)
.+.+++.++
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666554
No 79
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.11 E-value=1.9e-07 Score=105.92 Aligned_cols=436 Identities=9% Similarity=0.035 Sum_probs=260.3
Q ss_pred ChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCC---HH
Q 003913 159 ENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGC---LD 235 (787)
Q Consensus 159 ~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~---~~ 235 (787)
...+-...|+..+..+ +.|...|..++..+.+.+.++.|..+|+.+... .+.....|..-+..-. +.+. ++
T Consensus 47 ~~~d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~---~~~~~~~~~ 120 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEF---DKMEELDAA 120 (679)
T ss_dssp CCSCHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHH---TC--CCCHH
T ss_pred CCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH---hhCCcchHH
Confidence 3444555667777665 669999999999999999999999999999986 2335667888888877 6788 99
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCC--hhhHHHHHHHHHHHHH-cCC-ccC-HHHHHHHHHHhh-h--
Q 003913 236 EACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLS--KYYLQQAEFIFHNLLT-SGL-EIQ-KDIYSGLIWLHS-Y-- 307 (787)
Q Consensus 236 ~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~--~g~~~~A~~~~~~m~~-~~~-~p~-~~~~~~li~~~~-~-- 307 (787)
.+.++|++........|++..|..-+.-..+..+... .+..+...++|+..+. .|. .++ ...+...+.... +
T Consensus 121 ~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~ 200 (679)
T 4e6h_A 121 VIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKP 200 (679)
T ss_dssp HHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccc
Confidence 9999999998741113888888777665433211000 1223556678887654 465 453 344444442111 1
Q ss_pred ----ccCCCHHHHHHHHHHHHHcCCCCCHHHHH---HHHHHHH----------hcCChHHHHHHHHHHHhC--CCC----
Q 003913 308 ----QDNIDKERISLLKKEMQQAGFEEGKEVLL---SVLRVCA----------KEGDVEDAEKTWLRLLES--DNG---- 364 (787)
Q Consensus 308 ----~~~g~~~~a~~l~~~m~~~g~~p~~~t~~---~li~~~~----------~~g~~~~A~~~~~~m~~~--~~~---- 364 (787)
...++.+.+..+|++........-..+|. .....+. ....++.|...+.++... ++.
T Consensus 201 ~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p 280 (679)
T 4e6h_A 201 VNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLP 280 (679)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCC
T ss_pred cCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccc
Confidence 12234677888998887521111123332 2211110 011233344444443221 110
Q ss_pred -----------C--C------HHHHHHHHHHHHHcC-------ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 003913 365 -----------I--P------TPAFVYKMEAYAKIG-------EFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEET 418 (787)
Q Consensus 365 -----------~--~------~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 418 (787)
| + ...|...+.---..+ ..+.+..+|++.... ++-+...|-..+.-+...|+.
T Consensus 281 ~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~ 359 (679)
T 4e6h_A 281 ITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTD 359 (679)
T ss_dssp SSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCC
T ss_pred cccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcH
Confidence 1 0 134444444322222 123456778888765 333677788778878888888
Q ss_pred HHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----------CC------------CHHHHH
Q 003913 419 ELTE-SLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKC----------RP------------NRTIYG 475 (787)
Q Consensus 419 ~~A~-~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~----------~p------------~~~~~~ 475 (787)
++|. .+|++.... ++.+...+...+....+.|+++.|..+|+.+++.. .| ...+|.
T Consensus 360 ~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi 438 (679)
T 4e6h_A 360 STVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYC 438 (679)
T ss_dssp TTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHH
Confidence 8886 888888763 34566667778888888888989988888887521 13 234688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhC-CCCCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHh
Q 003913 476 IYLESLKNAGNIEKAEEIFNHMHSD-QTIGVNTRSCNIILSAYLSS-GDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLS 553 (787)
Q Consensus 476 ~li~~~~~~g~~~~A~~l~~~m~~~-~~~~p~~~t~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~ 553 (787)
..+....+.|..+.|..+|.+..+. + .+....|...+..-.+. ++.+.|.++|+..++. ++-++..+..+.....
T Consensus 439 ~y~~~erR~~~l~~AR~vf~~A~~~~~--~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~ 515 (679)
T 4e6h_A 439 VYMNTMKRIQGLAASRKIFGKCRRLKK--LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLI 515 (679)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHTGG--GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHH
Confidence 8888888888889999999888776 3 12233443333333343 4588899998888874 4445555433333221
Q ss_pred h------cccccccccccCCchHHHHHHHHHHhhhhhhccchhhcceeEE--EEEccCCc
Q 003913 554 L------NRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMIR--FQFNENSR 605 (787)
Q Consensus 554 l------~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~--~~~~p~~~ 605 (787)
. .|..++..+....+++....+|...+..-..+|+.+.+..+.+ .+..|++.
T Consensus 516 ~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 516 YVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred hCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 1 1112221111111122245778888877777887777766665 55566554
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.10 E-value=6.4e-09 Score=102.28 Aligned_cols=195 Identities=9% Similarity=-0.007 Sum_probs=145.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003913 330 EGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKII 409 (787)
Q Consensus 330 p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 409 (787)
.|...+......+...|++++|...|++..+....++...+..+..+|.+.|++++|++.|++..+.... +...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 3567778888888889999999999998888775457777777888888899999999999888875322 556788888
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHH
Q 003913 410 ELLCKAEETELTESLMKEFVETGMKPLM-------PSYINLTNMYLNLGMHDRLHLAFSECLEKCRP--NRTIYGIYLES 480 (787)
Q Consensus 410 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p--~~~~~~~li~~ 480 (787)
..|...|++++|...+++..+.. +.+. .+|..+...+...|++++|...|++.++..+. +..+|..+...
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 88889999999999998888743 2234 45777888888888889999888888875444 46777777777
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 481 LKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 481 ~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
|...| ..+++++...+ ..+...|.... ....+.+++|+..|++..+
T Consensus 163 ~~~~~-----~~~~~~a~~~~--~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 163 FYNNG-----ADVLRKATPLA--SSNKEKYASEK--AKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHHH-----HHHHHHHGGGT--TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHhcc--cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh
Confidence 76544 44556666553 34455555444 3345668999999999987
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.09 E-value=2.1e-09 Score=105.83 Aligned_cols=208 Identities=11% Similarity=0.075 Sum_probs=147.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003913 366 PTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTN 445 (787)
Q Consensus 366 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~ 445 (787)
|...+..+...|.+.|++++|...|++..+....++...+..+..++...|++++|...+++..+.. +-+..++..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 5677888888888999999999999988877544677777778888888999999999998888743 234677888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC--CHHHHHHHHHH
Q 003913 446 MYLNLGMHDRLHLAFSECLEKCRPNR-------TIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGV--NTRSCNIILSA 516 (787)
Q Consensus 446 ~~~~~g~~~~a~~~~~~m~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p--~~~t~~~li~~ 516 (787)
+|...|++++|...|++..+..+.+. .+|..+...+.+.|++++|++.|++..+.. +. +...|..+...
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT--SKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS--CHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC--CCcccHHHHHHHHHH
Confidence 88889999999999988887556666 557788888888888999999998888864 23 35677777777
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhhhhccchhhcceeE
Q 003913 517 YLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKRHMI 596 (787)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 596 (787)
|...| ..+++++...+- ..+.. +..+. ....+.++.|...+
T Consensus 163 ~~~~~-----~~~~~~a~~~~~-~~~~~-------------------------------~~~~~--~~~~~~~~~A~~~~ 203 (228)
T 4i17_A 163 FYNNG-----ADVLRKATPLAS-SNKEK-------------------------------YASEK--AKADAAFKKAVDYL 203 (228)
T ss_dssp HHHHH-----HHHHHHHGGGTT-TCHHH-------------------------------HHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHhccc-CCHHH-------------------------------HHHHH--HHHHHHHHHHHHHH
Confidence 75443 344555554221 11111 11111 12234456666666
Q ss_pred E--EEEccCCcccHHHHHHHH
Q 003913 597 R--FQFNENSRMHSVLRRYLY 615 (787)
Q Consensus 597 ~--~~~~p~~~~~~~~l~~~y 615 (787)
+ ++++|++......++.+.
T Consensus 204 ~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 204 GEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHhhcCCCCHHHHHHHHHHH
Confidence 6 677888887777766554
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.05 E-value=6.7e-09 Score=119.35 Aligned_cols=168 Identities=13% Similarity=0.114 Sum_probs=148.3
Q ss_pred CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003913 329 EEG-KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHK 407 (787)
Q Consensus 329 ~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 407 (787)
.|+ ...|+.|..+|.+.|++++|.+.|++.++..+. +..+|+.+..+|.+.|++++|++.|++..+... -+..+|+.
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~n 82 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSN 82 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHH
Confidence 343 567899999999999999999999999988754 678999999999999999999999999987632 25789999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCH
Q 003913 408 IIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNI 487 (787)
Q Consensus 408 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~ 487 (787)
+..+|...|++++|.+.|++.++.. +-+..+|+.+..+|.+.|++++|+..|++.++..+-+...|..|...|...|++
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence 9999999999999999999999853 335789999999999999999999999999986677899999999999999999
Q ss_pred HHHHHHHHHhhh
Q 003913 488 EKAEEIFNHMHS 499 (787)
Q Consensus 488 ~~A~~l~~~m~~ 499 (787)
++|.+.+++..+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988765
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.05 E-value=1.7e-09 Score=109.86 Aligned_cols=225 Identities=13% Similarity=0.112 Sum_probs=155.8
Q ss_pred cCCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC------CCC-CCHHHHHHHH
Q 003913 309 DNIDKERISLLKKEMQQ-------AGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLES------DNG-IPTPAFVYKM 374 (787)
Q Consensus 309 ~~g~~~~a~~l~~~m~~-------~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~-~~~~~~~~li 374 (787)
..|++++|..+|++..+ ........++..+...|...|++++|...+++..+. +-. ....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 44555555555554443 222224567888999999999999999999988765 211 2356788899
Q ss_pred HHHHHcCChHHHHHHHHHHHHc------CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCC-CHHHH
Q 003913 375 EAYAKIGEFMKSLEIFREMQER------LG-SASVPAYHKIIELLCKAEETELTESLMKEFVET------GMKP-LMPSY 440 (787)
Q Consensus 375 ~~~~~~g~~~~A~~~~~~m~~~------g~-~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p-~~~t~ 440 (787)
..|...|++++|.+.|++.... .. +....+|..+...|...|++++|...++++.+. +-.| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999998754 11 223567888999999999999999999998874 1123 35678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc---------CCCCHHHHHHHHHHHHhcC------CHHHHHHHHHHhhhCCCCCC
Q 003913 441 INLTNMYLNLGMHDRLHLAFSECLEK---------CRPNRTIYGIYLESLKNAG------NIEKAEEIFNHMHSDQTIGV 505 (787)
Q Consensus 441 ~~li~~~~~~g~~~~a~~~~~~m~~~---------~~p~~~~~~~li~~~~~~g------~~~~A~~l~~~m~~~~~~~p 505 (787)
..+...|...|++++|...++++.+. .......|..+...+...+ .+.++...++...... +.
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 250 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDS--PT 250 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCC--HH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCC--HH
Confidence 89999999999999999999998752 1222334444444444332 2444444454444331 33
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 506 NTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 506 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
...++..+...|...|++++|..+|++.++
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467889999999999999999999999875
No 84
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.99 E-value=2.1e-08 Score=88.52 Aligned_cols=128 Identities=15% Similarity=0.149 Sum_probs=73.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Q 003913 405 YHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNA 484 (787)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~ 484 (787)
|..+...+...|++++|..+++++.+.. +.+..++..+...+...|++++|...|+.+.+..+.+...|..+...|.+.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 3444444555555555555555554432 223445555555555555555555555555553344555666666666666
Q ss_pred CCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 485 GNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 485 g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
|++++|.++|+++.+.. +.+..++..+...|.+.|++++|...|+++.+
T Consensus 83 ~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 66666666666666553 34556666666666666666666666666654
No 85
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.96 E-value=2.8e-07 Score=98.01 Aligned_cols=274 Identities=9% Similarity=0.020 Sum_probs=154.1
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHCCCCCCHh----HHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHH----H
Q 003913 185 KLADYMGKERKFAKCRDIFDDIINQGRVPSEM----TFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPS----L 256 (787)
Q Consensus 185 ~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~----ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~----t 256 (787)
.+...+...|++++|...+++........+.. +++.+...+. ..|++++|...+++......-.++.. +
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH---CKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 33445567788888888888877653222221 4555555666 67888888888888765310011111 1
Q ss_pred HHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCC--CC-HH
Q 003913 257 HNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFE--EG-KE 333 (787)
Q Consensus 257 ~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~--p~-~~ 333 (787)
+..+-..+... |++++|...+++.+... ...+.. |. ..
T Consensus 96 ~~~la~~~~~~------G~~~~A~~~~~~al~~~---------------------------------~~~~~~~~~~~~~ 136 (373)
T 1hz4_A 96 LIQQSEILFAQ------GFLQTAWETQEKAFQLI---------------------------------NEQHLEQLPMHEF 136 (373)
T ss_dssp HHHHHHHHHHT------TCHHHHHHHHHHHHHHH---------------------------------HHTTCTTSTHHHH
T ss_pred HHHHHHHHHHC------CCHHHHHHHHHHHHHHH---------------------------------HHhccccCcHHHH
Confidence 11122222222 35555555544433210 011111 22 23
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHH--
Q 003913 334 VLLSVLRVCAKEGDVEDAEKTWLRLLESDNGI----PTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASV-PAYH-- 406 (787)
Q Consensus 334 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~-- 406 (787)
++..+...+...|++++|...+++..+..... ...++..+...+...|++++|...+++.......++. ..+.
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 216 (373)
T 1hz4_A 137 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 216 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHH
Confidence 45556667777888888888887766543211 2345666777788888888888888877643111111 1121
Q ss_pred ---HHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCH-HHH
Q 003913 407 ---KIIELLCKAEETELTESLMKEFVETGMKP---LMPSYINLTNMYLNLGMHDRLHLAFSECLE-----KCRPNR-TIY 474 (787)
Q Consensus 407 ---~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~p~~-~~~ 474 (787)
..+..+...|+.++|...+++.......+ ....+..+...+...|++++|...++.... +..++. .++
T Consensus 217 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 296 (373)
T 1hz4_A 217 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL 296 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 22234667788888887777765432111 123456666777777777777777777654 111122 255
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhC
Q 003913 475 GIYLESLKNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 475 ~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (787)
..+...|...|+.++|...+++....
T Consensus 297 ~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 297 LLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 56666777777777777777776553
No 86
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.95 E-value=9.7e-08 Score=101.93 Aligned_cols=314 Identities=8% Similarity=-0.031 Sum_probs=201.5
Q ss_pred ccCHHHHHHHHHHH--HccCChhHHHHHHHHHHHC--CC--CCCHhHHHHHHHHHhcC-----CcCC---CHHHHHHHHH
Q 003913 177 RFDFALATKLADYM--GKERKFAKCRDIFDDIINQ--GR--VPSEMTFHILIVAYLSA-----PVQG---CLDEACSIYN 242 (787)
Q Consensus 177 ~~~~~~~~~li~~~--~~~g~~~~A~~~f~~m~~~--g~--~pd~~ty~~li~~~~~~-----~~~g---~~~~A~~l~~ 242 (787)
.|+..+-+.|-++| .+.+++++|..+++++.+. .+ .+++..|-.++..-... .... ......+.++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 44566666677777 6778888888888776552 12 12233333333321000 0001 1122225555
Q ss_pred HHHHhCCCCC-C-HHH--HHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCc-cC--HHHHHHHHHHhhhccCCCHHH
Q 003913 243 RMIQLGGYQP-R-PSL--HNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLE-IQ--KDIYSGLIWLHSYQDNIDKER 315 (787)
Q Consensus 243 ~m~~~~g~~p-d-~~t--~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~-p~--~~~~~~li~~~~~~~~g~~~~ 315 (787)
.+... ..+ + ... |......+.... |++++|...|++..+.... ++ .........+..+...|+++.
T Consensus 87 ~i~~~--~~~~~~~l~~~~~~~~g~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~ 159 (378)
T 3q15_A 87 TIETP--QKKLTGLLKYYSLFFRGMYEFDQ-----KEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHV 159 (378)
T ss_dssp HHHGG--GHHHHHHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHhcc--CCCCccHHHHHHHHHHHHHHHHH-----CCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHH
Confidence 55432 011 1 111 222222222222 6999999999998765321 22 122223333477889999999
Q ss_pred HHHHHHHHHHcC--C---CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHHcCChH
Q 003913 316 ISLLKKEMQQAG--F---EE-GKEVLLSVLRVCAKEGDVEDAEKTWLRLLES----DNG-IPTPAFVYKMEAYAKIGEFM 384 (787)
Q Consensus 316 a~~l~~~m~~~g--~---~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~~~ 384 (787)
|...+.+..+.- . .+ ...+++.+..+|...|++++|.+.+++..+. +.. ....+++.+...|...|+++
T Consensus 160 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~ 239 (378)
T 3q15_A 160 SMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQ 239 (378)
T ss_dssp HHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 999998876531 1 11 2456788999999999999999999987763 111 12356778999999999999
Q ss_pred HHHHHHHHHHH-----cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC-HHHHHHHHHHHHhcCC---
Q 003913 385 KSLEIFREMQE-----RLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGM---KPL-MPSYINLTNMYLNLGM--- 452 (787)
Q Consensus 385 ~A~~~~~~m~~-----~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~-~~t~~~li~~~~~~g~--- 452 (787)
+|.+.|++..+ .. +....++..+...+.+.|++++|...+++..+..- .|. ...+..+...|...++
T Consensus 240 ~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~ 318 (378)
T 3q15_A 240 MAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERK 318 (378)
T ss_dssp HHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHH
T ss_pred HHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHH
Confidence 99999999876 32 22366788899999999999999999999987421 122 3456666677778888
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 003913 453 HDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (787)
Q Consensus 453 ~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (787)
+.+|...++... ..+.....+..+...|.+.|++++|.+.|++..+
T Consensus 319 ~~~al~~~~~~~-~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 319 IHDLLSYFEKKN-LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777777777632 1122335677899999999999999999998865
No 87
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.94 E-value=2.4e-07 Score=98.52 Aligned_cols=261 Identities=10% Similarity=-0.058 Sum_probs=188.0
Q ss_pred hhHHHHHHHHHHHHHcCCccCHHH--HHHHHHHhhhccCCCHHHHHHHHHHHHHcCC-CCCH----HHHHHHHHHHHhcC
Q 003913 274 YYLQQAEFIFHNLLTSGLEIQKDI--YSGLIWLHSYQDNIDKERISLLKKEMQQAGF-EEGK----EVLLSVLRVCAKEG 346 (787)
Q Consensus 274 g~~~~A~~~~~~m~~~~~~p~~~~--~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~-~p~~----~t~~~li~~~~~~g 346 (787)
|++++|...+++.+......+... .........+...|++++|...+++.....- .++. .++..+...+...|
T Consensus 28 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G 107 (373)
T 1hz4_A 28 GNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQG 107 (373)
T ss_dssp TCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCC
Confidence 699999999999887653333321 1223334667788999999999988765311 1122 33567778889999
Q ss_pred ChHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHhc
Q 003913 347 DVEDAEKTWLRLLES----DNG--I-PTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSA----SVPAYHKIIELLCKA 415 (787)
Q Consensus 347 ~~~~A~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~li~~~~~~ 415 (787)
++++|...+++..+. +.. | ...++..+...|...|++++|...+++........ ...+|..+...+...
T Consensus 108 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~ 187 (373)
T 1hz4_A 108 FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLAR 187 (373)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHc
Confidence 999999999987763 211 2 23456678889999999999999999987542211 235678888999999
Q ss_pred CChHHHHHHHHHHHHcCCCCC--HHHHH----HHHHHHHhcCCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHhcC
Q 003913 416 EETELTESLMKEFVETGMKPL--MPSYI----NLTNMYLNLGMHDRLHLAFSECLEKCRP----NRTIYGIYLESLKNAG 485 (787)
Q Consensus 416 g~~~~A~~l~~~m~~~g~~p~--~~t~~----~li~~~~~~g~~~~a~~~~~~m~~~~~p----~~~~~~~li~~~~~~g 485 (787)
|++++|...+++.....-.++ ..... ..+..+...|++++|...+.......+. ....+..+...+...|
T Consensus 188 g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g 267 (373)
T 1hz4_A 188 GDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLG 267 (373)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcC
Confidence 999999999999876321211 12111 3345578999999999999998762211 1346778889999999
Q ss_pred CHHHHHHHHHHhhhC----CCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 486 NIEKAEEIFNHMHSD----QTIGVNT-RSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 486 ~~~~A~~l~~~m~~~----~~~~p~~-~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
++++|...+++.... | .+++. .++..+..++...|+.++|...+++...
T Consensus 268 ~~~~A~~~l~~a~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 268 EFEPAEIVLEELNENARSLR-LMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp CHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999999987653 2 11223 3677778889999999999999998875
No 88
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.94 E-value=5.3e-08 Score=85.91 Aligned_cols=130 Identities=17% Similarity=0.180 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003913 369 AFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYL 448 (787)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~ 448 (787)
.|..+...|...|++++|..+|+++.+.. +.+...|..+...+...|++++|..+++++.+.+ +.+...+..+...|.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 45667777777788888888887777653 2356677777777777888888888888777654 345667777888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 003913 449 NLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 449 ~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (787)
..|++++|...++.+.+..+.+..++..+...|.+.|++++|...|+++...
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 8888888888888887755667788888888888888888888888888764
No 89
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.92 E-value=8.8e-09 Score=104.44 Aligned_cols=224 Identities=13% Similarity=0.037 Sum_probs=151.1
Q ss_pred hHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHhcCC
Q 003913 275 YLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQA------GFEE-GKEVLLSVLRVCAKEGD 347 (787)
Q Consensus 275 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~------g~~p-~~~t~~~li~~~~~~g~ 347 (787)
.+++|.+++..+...+.. .........+..+...|++++|...+++..+. +-.| ...++..+...|...|+
T Consensus 23 ~~~~al~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 100 (283)
T 3edt_B 23 LCKQALEDLEKTSGHDHP--DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGK 100 (283)
T ss_dssp HHHHHHHHHHHHHCSSSH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhcc
Confidence 344444444444332322 23333344458889999999999999998765 3233 34578899999999999
Q ss_pred hHHHHHHHHHHHhCC-----C--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHH
Q 003913 348 VEDAEKTWLRLLESD-----N--GIPTPAFVYKMEAYAKIGEFMKSLEIFREMQER------LGSA-SVPAYHKIIELLC 413 (787)
Q Consensus 348 ~~~A~~~~~~m~~~~-----~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~li~~~~ 413 (787)
+++|.+.+++..+.. . .....++..+...|...|++++|...|++..+. +..| ...++..+...|.
T Consensus 101 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 180 (283)
T 3edt_B 101 YKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYL 180 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 999999999988751 1 123567888999999999999999999998764 1122 3567889999999
Q ss_pred hcCChHHHHHHHHHHHHc-------CCCCC-HHHHHHHHHHHHhcCC------HHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 003913 414 KAEETELTESLMKEFVET-------GMKPL-MPSYINLTNMYLNLGM------HDRLHLAFSECLEKCRPNRTIYGIYLE 479 (787)
Q Consensus 414 ~~g~~~~A~~l~~~m~~~-------g~~p~-~~t~~~li~~~~~~g~------~~~a~~~~~~m~~~~~p~~~~~~~li~ 479 (787)
..|++++|..+++++.+. ...+. ...+..+...+...+. +..+...+.......+....++..+..
T Consensus 181 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 260 (283)
T 3edt_B 181 KQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGA 260 (283)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 999999999999998863 12222 2233333333333332 233333333222122334567889999
Q ss_pred HHHhcCCHHHHHHHHHHhhhC
Q 003913 480 SLKNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 480 ~~~~~g~~~~A~~l~~~m~~~ 500 (787)
.|.+.|++++|..+|++..+.
T Consensus 261 ~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 261 LYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999998764
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.87 E-value=9e-08 Score=98.10 Aligned_cols=211 Identities=10% Similarity=0.020 Sum_probs=156.6
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCChHHH
Q 003913 312 DKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLES----DNGI-PTPAFVYKMEAYAKIGEFMKS 386 (787)
Q Consensus 312 ~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~A 386 (787)
++++|...|.+. ...|...|++++|...|.+..+. |-.+ ...+|+.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 377777777665 44677899999999999887664 2111 146788899999999999999
Q ss_pred HHHHHHHHHcCCC-CC----HHHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHH
Q 003913 387 LEIFREMQERLGS-AS----VPAYHKIIELLCKA-EETELTESLMKEFVETGMK-PL----MPSYINLTNMYLNLGMHDR 455 (787)
Q Consensus 387 ~~~~~~m~~~g~~-p~----~~t~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~-p~----~~t~~~li~~~~~~g~~~~ 455 (787)
+..|++..+.... .+ ..+|+.+...|... |++++|...|++.++..-. .+ ..++..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 9999987643110 11 34788899999996 9999999999998863110 11 4578899999999999999
Q ss_pred HHHHHHHHHhcCC--CCH-----HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCH------HHHHHHHHHHH--cC
Q 003913 456 LHLAFSECLEKCR--PNR-----TIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNT------RSCNIILSAYL--SS 520 (787)
Q Consensus 456 a~~~~~~m~~~~~--p~~-----~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~------~t~~~li~~~~--~~ 520 (787)
|...|++..+..+ +.. .+|..+..+|...|++++|...|++..+.. |+. ..+..++.+|. ..
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~---p~~~~~~~~~~l~~l~~~~~~~~~ 253 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED---PNFADSRESNFLKSLIDAVNEGDS 253 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCCCcHHHHHHHHHHHHHHcCCH
Confidence 9999999987322 221 267888889999999999999999998743 432 13455666665 46
Q ss_pred CCHHHHHHHHHHHHHcCCccCHHH
Q 003913 521 GDFVKAEKIYDLMCLKKYEIESAW 544 (787)
Q Consensus 521 g~~~~A~~~~~~m~~~g~~~~p~~ 544 (787)
+++++|++.|+++.. ++|..
T Consensus 254 ~~~~~A~~~~~~~~~----l~~~~ 273 (292)
T 1qqe_A 254 EQLSEHCKEFDNFMR----LDKWK 273 (292)
T ss_dssp TTHHHHHHHHTTSSC----CCHHH
T ss_pred HHHHHHHHHhccCCc----cHHHH
Confidence 779999999987764 67764
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.79 E-value=2.7e-07 Score=92.65 Aligned_cols=183 Identities=10% Similarity=0.048 Sum_probs=117.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC-HHHHH
Q 003913 331 GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIP--TPAFVYKMEAYAKIGEFMKSLEIFREMQERLG-SAS-VPAYH 406 (787)
Q Consensus 331 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~~ 406 (787)
+...+..+...+.+.|++++|...|+++.+..+... ..++..+..+|.+.|++++|...|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 455566666677777777777777777777653211 45666677777777777777777777766521 111 34455
Q ss_pred HHHHHHHh--------cCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 003913 407 KIIELLCK--------AEETELTESLMKEFVETGMKPL-MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIY 477 (787)
Q Consensus 407 ~li~~~~~--------~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~l 477 (787)
.+..++.. .|++++|...|+++++.. |+ ......+.. +..+.. .-...+..+
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~--------------~~~~~~---~~~~~~~~l 154 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQK--------------IRELRA---KLARKQYEA 154 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHH--------------HHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHH--------------HHHHHH---HHHHHHHHH
Confidence 56666666 677777777777776632 22 111111100 000000 001224667
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCC----HHHHHHHHHHHHcC----------CCHHHHHHHHHHHHH
Q 003913 478 LESLKNAGNIEKAEEIFNHMHSDQTIGVN----TRSCNIILSAYLSS----------GDFVKAEKIYDLMCL 535 (787)
Q Consensus 478 i~~~~~~g~~~~A~~l~~~m~~~~~~~p~----~~t~~~li~~~~~~----------g~~~~A~~~~~~m~~ 535 (787)
...|.+.|++++|+..|+++.+.. |+ ...+..+..+|... |++++|+..|++.++
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAY---PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC---TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHC---CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 888999999999999999998864 33 45777888888866 889999999999987
No 92
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.79 E-value=2.4e-07 Score=94.93 Aligned_cols=238 Identities=9% Similarity=0.074 Sum_probs=170.7
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHH
Q 003913 236 EACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKER 315 (787)
Q Consensus 236 ~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~ 315 (787)
+|.+++.+..+. +++....| .++ +.. ..+++++|...|++.. ..+...|++++
T Consensus 3 ~a~~~~~~a~k~--~~~~~~~~-~~~----~~~---~~~~~~~A~~~~~~a~-----------------~~~~~~g~~~~ 55 (292)
T 1qqe_A 3 DPVELLKRAEKK--GVPSSGFM-KLF----SGS---DSYKFEEAADLCVQAA-----------------TIYRLRKELNL 55 (292)
T ss_dssp CHHHHHHHHHHH--SSCCCTHH-HHH----SCC---SHHHHHHHHHHHHHHH-----------------HHHHHTTCTHH
T ss_pred cHHHHHHHHHHH--hCcCCCcc-hhc----CCC---CCccHHHHHHHHHHHH-----------------HHHHHcCCHHH
Confidence 577788888775 44432222 222 211 0136999999998873 34567789999
Q ss_pred HHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-C----HHHHHHHHHHHHHc-CChH
Q 003913 316 ISLLKKEMQQA----GFEEG-KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGI-P----TPAFVYKMEAYAKI-GEFM 384 (787)
Q Consensus 316 a~~l~~~m~~~----g~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~----~~~~~~li~~~~~~-g~~~ 384 (787)
|...|.+..+. |-.++ ..+|+.+..+|.+.|++++|...+++..+..... + ..+++.+...|... |+++
T Consensus 56 A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~ 135 (292)
T 1qqe_A 56 AGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYA 135 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHH
Confidence 99999877653 32222 4688999999999999999999999887642111 1 35788899999996 9999
Q ss_pred HHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhcCCH
Q 003913 385 KSLEIFREMQERLGS-AS----VPAYHKIIELLCKAEETELTESLMKEFVETGMKPLM------PSYINLTNMYLNLGMH 453 (787)
Q Consensus 385 ~A~~~~~~m~~~g~~-p~----~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~------~t~~~li~~~~~~g~~ 453 (787)
+|+..|++..+.... .+ ..+|+.+...+.+.|++++|...|++..+....... .+|..+..+|...|++
T Consensus 136 ~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 215 (292)
T 1qqe_A 136 KAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDA 215 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCH
Confidence 999999998753111 01 356888999999999999999999999985432221 2678888999999999
Q ss_pred HHHHHHHHHHHhcCCCC-----HHHHHHHHHHHH--hcCCHHHHHHHHHHhhhC
Q 003913 454 DRLHLAFSECLEKCRPN-----RTIYGIYLESLK--NAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 454 ~~a~~~~~~m~~~~~p~-----~~~~~~li~~~~--~~g~~~~A~~l~~~m~~~ 500 (787)
++|...|++.++..+.. ...+..++..|. ..+++++|+..|+++...
T Consensus 216 ~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 216 VAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp HHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence 99999999987622111 123455666665 457899999999888764
No 93
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.78 E-value=7.4e-08 Score=111.15 Aligned_cols=174 Identities=10% Similarity=-0.015 Sum_probs=148.2
Q ss_pred HhcCChHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003913 343 AKEGDVEDAEKTWLRLL--------ESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCK 414 (787)
Q Consensus 343 ~~~g~~~~A~~~~~~m~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 414 (787)
...|++++|.+.+++.. +... .+...+..+...|.+.|++++|++.|++..+... -+...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS-ESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc-cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHH
Confidence 68899999999999998 4443 3567888899999999999999999999987633 377899999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003913 415 AEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIF 494 (787)
Q Consensus 415 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~ 494 (787)
.|++++|...|++.++.. +-+...+..+..+|.+.|++++ ...|++.++..+.+...|..+..+|.+.|++++|++.|
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999854 3357889999999999999999 99999999877788999999999999999999999999
Q ss_pred HHhhhCCCCCCCHHHHHHHHHHHHcCCC
Q 003913 495 NHMHSDQTIGVNTRSCNIILSAYLSSGD 522 (787)
Q Consensus 495 ~~m~~~~~~~p~~~t~~~li~~~~~~g~ 522 (787)
++..+.+ +-+...|..+..++...|+
T Consensus 558 ~~al~l~--P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTS--RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTS--TTHHHHHHHHHHHTC----
T ss_pred HhhcccC--cccHHHHHHHHHHHHccCC
Confidence 9999864 3346788888888877655
No 94
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.76 E-value=4.5e-06 Score=85.01 Aligned_cols=241 Identities=10% Similarity=0.042 Sum_probs=187.1
Q ss_pred hHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcC--ChHHH
Q 003913 275 YLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGK-EVLLSVLRVCAKEG--DVEDA 351 (787)
Q Consensus 275 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~-~t~~~li~~~~~~g--~~~~A 351 (787)
.+.++...|..+.+.|- ..++|+.+++.+... .|+. .+|+.--.++...| +++++
T Consensus 31 ~y~~~~~~~~a~~~~~e--------------------~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~ee 88 (306)
T 3dra_A 31 DYKQIMGLLLALMKAEE--------------------YSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDE 88 (306)
T ss_dssp HHHHHHHHHHHHHHTTC--------------------CSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHH
T ss_pred HHHHHHHHHHHHHHcCC--------------------CCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHH
Confidence 55666666666555442 246788888888773 5654 45777777777788 99999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHH----HHc---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH--HHH
Q 003913 352 EKTWLRLLESDNGIPTPAFVYKMEAY----AKI---GEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETE--LTE 422 (787)
Q Consensus 352 ~~~~~~m~~~~~~~~~~~~~~li~~~----~~~---g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~--~A~ 422 (787)
.+.++.++...++ +..+|+.--..+ .+. +++++++++++++.+...+ |..+|+.-.-.+.+.|.++ +++
T Consensus 89 L~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL 166 (306)
T 3dra_A 89 LDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKEL 166 (306)
T ss_dssp HHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHH
T ss_pred HHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHH
Confidence 9999999988765 567777654444 555 7899999999999987544 8889988888888889888 999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHH-HHHHHH
Q 003913 423 SLMKEFVETGMKPLMPSYINLTNMYLNLGM------HDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEK-AEEIFN 495 (787)
Q Consensus 423 ~l~~~m~~~g~~p~~~t~~~li~~~~~~g~------~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~-A~~l~~ 495 (787)
+.++++++.. .-|..+|+.-...+.+.+. ++++.+.+..++...+-|...|+.+-..+.+.|+..+ +.++.+
T Consensus 167 ~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~ 245 (306)
T 3dra_A 167 SFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSL 245 (306)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHH
Confidence 9999999876 4577888877777777776 8999999999988778899999999999999988544 556777
Q ss_pred HhhhCC-CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHH
Q 003913 496 HMHSDQ-TIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESA 543 (787)
Q Consensus 496 ~m~~~~-~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~ 543 (787)
+..+.+ .-+.+...+..+...|.+.|+.++|+++++.+.++ .+|.
T Consensus 246 ~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~---~Dpi 291 (306)
T 3dra_A 246 QFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSK---YNPI 291 (306)
T ss_dssp TTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCGG
T ss_pred HHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc---cChH
Confidence 766532 01357889999999999999999999999999863 4665
No 95
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.75 E-value=3.5e-07 Score=91.85 Aligned_cols=180 Identities=10% Similarity=0.079 Sum_probs=131.9
Q ss_pred HHHHHhhhccCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-C-CHHHHHHH
Q 003913 300 GLIWLHSYQDNIDKERISLLKKEMQQAGFEEG----KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNG-I-PTPAFVYK 373 (787)
Q Consensus 300 ~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~-~~~~~~~l 373 (787)
.+..+..+.+.|++++|...|+++.+.. |+ ...+..+..+|.+.|++++|...|++..+..+. | ...++..+
T Consensus 18 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l 95 (261)
T 3qky_A 18 AFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYER 95 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHH
Confidence 3444577889999999999999998853 43 567888999999999999999999999987542 2 24567778
Q ss_pred HHHHHH--------cCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003913 374 MEAYAK--------IGEFMKSLEIFREMQERLGSAS-VPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLT 444 (787)
Q Consensus 374 i~~~~~--------~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li 444 (787)
..+|.+ .|++++|...|++..+.. |+ ...+.++.. +..+... ....+..+.
T Consensus 96 g~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~--------------~~~~~~~----~~~~~~~la 155 (261)
T 3qky_A 96 AMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQK--------------IRELRAK----LARKQYEAA 155 (261)
T ss_dssp HHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHH--------------HHHHHHH----HHHHHHHHH
T ss_pred HHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHH--------------HHHHHHH----HHHHHHHHH
Confidence 888998 999999999999998763 33 222222211 1111100 012356677
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHhc----------CCHHHHHHHHHHhhhCC
Q 003913 445 NMYLNLGMHDRLHLAFSECLEKCRP---NRTIYGIYLESLKNA----------GNIEKAEEIFNHMHSDQ 501 (787)
Q Consensus 445 ~~~~~~g~~~~a~~~~~~m~~~~~p---~~~~~~~li~~~~~~----------g~~~~A~~l~~~m~~~~ 501 (787)
..|.+.|++++|...|+.+++..+. ....+..+..+|... |++++|...|+++.+..
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 8888889999999988888773332 356777888888766 88899999999988863
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.75 E-value=5.2e-07 Score=87.12 Aligned_cols=124 Identities=11% Similarity=-0.007 Sum_probs=86.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC-
Q 003913 408 IIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGN- 486 (787)
Q Consensus 408 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~- 486 (787)
+..+|.+.|++++|...|++.++.. +-+..++..+..+|...|++++|...|++.++..+.+..+|..+...|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHH
Confidence 6777788888888888888877753 33577788888888888888888888888877666777888888877766553
Q ss_pred -HHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 487 -IEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 487 -~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
.+.+...++..... .|....+..+..++...|++++|+..|++.++
T Consensus 139 ~~~~~~~~~~~~~~~---~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 139 EKKKLETDYKKLSSP---TKMQYARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHC---CC---CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCC---CchhHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34455556555432 23333455556666777888888888888875
No 97
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.74 E-value=1e-06 Score=85.25 Aligned_cols=176 Identities=13% Similarity=0.094 Sum_probs=130.6
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----ChHHHHHHH
Q 003913 350 DAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAE----ETELTESLM 425 (787)
Q Consensus 350 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g----~~~~A~~l~ 425 (787)
+|.+.|++..+.| +..++..|...|...+++++|++.|++..+.| +...+..|...|.. + +.++|...|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4566677777765 66777778888888888888888888877764 56667777777766 5 788888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 003913 426 KEFVETGMKPLMPSYINLTNMYLN----LGMHDRLHLAFSECLEKCRP--NRTIYGIYLESLKN----AGNIEKAEEIFN 495 (787)
Q Consensus 426 ~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~m~~~~~p--~~~~~~~li~~~~~----~g~~~~A~~l~~ 495 (787)
++..+.| +..++..|...|.. .+++++|...|++..+.... +..++..|...|.. .+++++|+.+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 8887755 56677777777776 77888888888887762221 26788888888888 778889999998
Q ss_pred HhhhCCCCCCCHHHHHHHHHHHHcC-C-----CHHHHHHHHHHHHHcCC
Q 003913 496 HMHSDQTIGVNTRSCNIILSAYLSS-G-----DFVKAEKIYDLMCLKKY 538 (787)
Q Consensus 496 ~m~~~~~~~p~~~t~~~li~~~~~~-g-----~~~~A~~~~~~m~~~g~ 538 (787)
+..+.+ .+...+..|...|... | +.++|..+|++..+.|.
T Consensus 154 ~A~~~~---~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 154 GSSSLS---RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHTS---CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHcC---CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 888762 2555777777777653 3 88899999988887663
No 98
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.73 E-value=8e-07 Score=91.70 Aligned_cols=227 Identities=8% Similarity=-0.037 Sum_probs=160.1
Q ss_pred ChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 003913 272 SKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDA 351 (787)
Q Consensus 272 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 351 (787)
..|++++|.+++++..+.... ..+...++++.|...|.+. ...|...|++++|
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~------------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A 55 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT------------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQA 55 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC------------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc------------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHH
Confidence 347999999999988654321 0111257888888887765 4567789999999
Q ss_pred HHHHHHHHhCCCCC-C----HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--C-CCC--HHHHHHHHHHHHhcCChHHH
Q 003913 352 EKTWLRLLESDNGI-P----TPAFVYKMEAYAKIGEFMKSLEIFREMQERL--G-SAS--VPAYHKIIELLCKAEETELT 421 (787)
Q Consensus 352 ~~~~~~m~~~~~~~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~-~p~--~~t~~~li~~~~~~g~~~~A 421 (787)
...|.+..+..... + ..+|+.+...|.+.|++++|+..|++..+.- . .+. ..+++.+...|.. |++++|
T Consensus 56 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A 134 (307)
T 2ifu_A 56 KDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKA 134 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHH
Confidence 99998876642110 1 3478888999999999999999999875431 1 111 3567888888888 999999
Q ss_pred HHHHHHHHHcCC---CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCC----HHHHHHHHHHHHhcCCHHHH
Q 003913 422 ESLMKEFVETGM---KP--LMPSYINLTNMYLNLGMHDRLHLAFSECLEKC--RPN----RTIYGIYLESLKNAGNIEKA 490 (787)
Q Consensus 422 ~~l~~~m~~~g~---~p--~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~--~p~----~~~~~~li~~~~~~g~~~~A 490 (787)
...|++.++..- .+ ...++..+...|.+.|++++|...|++.++.. .++ ..++..++..+...|++++|
T Consensus 135 ~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A 214 (307)
T 2ifu_A 135 VHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHH
Confidence 999998876211 11 14678889999999999999999999987611 111 23677777888888999999
Q ss_pred HHHHHHhhhCCCCCCC---HHHHHHHHHHHHcCCCHHHHHH
Q 003913 491 EEIFNHMHSDQTIGVN---TRSCNIILSAYLSSGDFVKAEK 528 (787)
Q Consensus 491 ~~l~~~m~~~~~~~p~---~~t~~~li~~~~~~g~~~~A~~ 528 (787)
...|++.. ...-.++ ......++.++ ..|+.+.+.+
T Consensus 215 ~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 215 QKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999988 4310011 22445556655 5677766655
No 99
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.71 E-value=7e-07 Score=86.22 Aligned_cols=165 Identities=13% Similarity=0.103 Sum_probs=114.0
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH----------------HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH
Q 003913 341 VCAKEGDVEDAEKTWLRLLESDNGIPTPAFVY----------------KMEAYAKIGEFMKSLEIFREMQERLGSASVPA 404 (787)
Q Consensus 341 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~----------------li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 404 (787)
.+...|++++|...|++..+..+. +...|.. +..+|.+.|++++|+..|++..+... -+...
T Consensus 13 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~ 90 (208)
T 3urz_A 13 AAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP-NNVDC 90 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHH
Confidence 344555555555555555554321 2333444 88889999999999999999887642 36788
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCCH--HHHHHHHHH
Q 003913 405 YHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGM--HDRLHLAFSECLEKCRPNR--TIYGIYLES 480 (787)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~--~~~a~~~~~~m~~~~~p~~--~~~~~li~~ 480 (787)
|..+...+...|++++|...|++.++.. +-+..++..+..+|...|. ...+...+.... .|+. ..+..+..+
T Consensus 91 ~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~a~~~~g~~ 166 (208)
T 3urz_A 91 LEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS---SPTKMQYARYRDGLS 166 (208)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh---CCCchhHHHHHHHHH
Confidence 8899999999999999999999998854 4467888888888876654 344555555543 3333 344555667
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHH
Q 003913 481 LKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIIL 514 (787)
Q Consensus 481 ~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li 514 (787)
+...|++++|+..|++..+. .|+......+.
T Consensus 167 ~~~~~~~~~A~~~~~~al~l---~P~~~~~~~l~ 197 (208)
T 3urz_A 167 KLFTTRYEKARNSLQKVILR---FPSTEAQKTLD 197 (208)
T ss_dssp HHHHHTHHHHHHHHHHHTTT---SCCHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh---CCCHHHHHHHH
Confidence 77789999999999999985 47765544443
No 100
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.70 E-value=1.2e-06 Score=88.36 Aligned_cols=178 Identities=12% Similarity=0.056 Sum_probs=102.7
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003913 316 ISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDN-GIPTPAFVYKMEAYAKIGEFMKSLEIFREMQ 394 (787)
Q Consensus 316 a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 394 (787)
|+..|++....+ .++..++..+..++...|++++|.+++.+.+..+. .-+...+..++..|.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 445555554443 44555555666677777777777777776655543 1245556666777777777777777777776
Q ss_pred HcCCCC-----CHHHHHHHHHHH--HhcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003913 395 ERLGSA-----SVPAYHKIIELL--CKAE--ETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE 465 (787)
Q Consensus 395 ~~g~~p-----~~~t~~~li~~~--~~~g--~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 465 (787)
+. .| +..+...|..++ ...| +..+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 54 34 234444444442 2223 677777777776543 34433334444466667777777777665543
Q ss_pred c----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 003913 466 K----------CRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 466 ~----------~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (787)
. .+.|..+...+|......|+ +|.++++++.+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 1 13455555455555555565 666666666665
No 101
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.67 E-value=1.8e-06 Score=84.53 Aligned_cols=187 Identities=10% Similarity=-0.000 Sum_probs=114.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCH-HHHH
Q 003913 331 GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIP--TPAFVYKMEAYAKIGEFMKSLEIFREMQERLGS-ASV-PAYH 406 (787)
Q Consensus 331 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~-~t~~ 406 (787)
+...+..+...+.+.|++++|...|+++.+..+... ...+..+..+|.+.|++++|+..|++..+.... +.. ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 344555666777888888888888888887653311 356777788888888888888888888765322 111 1344
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHH------------
Q 003913 407 KIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIY------------ 474 (787)
Q Consensus 407 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~------------ 474 (787)
.+..++...+.. .+ ..|..+...+...|+.++|...|+.+++..+-+..++
T Consensus 83 ~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~ 145 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDR 145 (225)
T ss_dssp HHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH
Confidence 444444432100 00 0011111122223444444444444444222222221
Q ss_pred -----HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCH---HHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 003913 475 -----GIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNT---RSCNIILSAYLSSGDFVKAEKIYDLMCLK 536 (787)
Q Consensus 475 -----~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~---~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (787)
..+...|.+.|++++|+..|+++.+.. |.+. ..+..+..+|.+.|++++|.+.++.+...
T Consensus 146 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 146 LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 345677889999999999999999873 2222 57888999999999999999999988864
No 102
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.66 E-value=1e-07 Score=109.90 Aligned_cols=158 Identities=15% Similarity=0.059 Sum_probs=139.7
Q ss_pred HHcCChHHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003913 378 AKIGEFMKSLEIFREMQ--------ERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLN 449 (787)
Q Consensus 378 ~~~g~~~~A~~~~~~m~--------~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~ 449 (787)
...|++++|++.|++.. +. .+.+...|..+...+...|++++|...+++..+.. +-+...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 77899999999999998 33 23356788889999999999999999999999854 4468899999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 003913 450 LGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKI 529 (787)
Q Consensus 450 ~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~ 529 (787)
.|++++|...|++.++..+.+...|..+...|.+.|++++ ++.|++..+.+ +-+...|..+..+|.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN--DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999998667788999999999999999999 99999999875 55788999999999999999999999
Q ss_pred HHHHHHcCCccCHHH
Q 003913 530 YDLMCLKKYEIESAW 544 (787)
Q Consensus 530 ~~~m~~~g~~~~p~~ 544 (787)
|++.++ .+|+.
T Consensus 557 ~~~al~----l~P~~ 567 (681)
T 2pzi_A 557 LDEVPP----TSRHF 567 (681)
T ss_dssp HHTSCT----TSTTH
T ss_pred HHhhcc----cCccc
Confidence 998875 66653
No 103
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.65 E-value=1.2e-06 Score=88.25 Aligned_cols=179 Identities=15% Similarity=0.091 Sum_probs=136.7
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003913 351 AEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLG-SASVPAYHKIIELLCKAEETELTESLMKEFV 429 (787)
Q Consensus 351 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~ 429 (787)
|...+++..+.+ .++..++..+..+|...|++++|++++.+....|. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 677788777665 34566667889999999999999999999876653 2266788889999999999999999999998
Q ss_pred HcCCCC-----CHHHHHHHHHHH--HhcC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 003913 430 ETGMKP-----LMPSYINLTNMY--LNLG--MHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 430 ~~g~~p-----~~~t~~~li~~~--~~~g--~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (787)
+. .| +..+...|+.++ ...| +..+|..+|+++.+. .|+..+-..|+.++.+.|++++|.+.++.+.+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~-~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT-FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT-SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh-CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 74 56 356666676663 3334 899999999998764 355334444555899999999999999977653
Q ss_pred C----CC----CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 501 Q----TI----GVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 501 ~----~~----~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
. .. +-|..+...+|......|+ +|.++++++.+
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 0 00 3366777566666666787 89999999997
No 104
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.64 E-value=5.9e-07 Score=101.56 Aligned_cols=154 Identities=7% Similarity=-0.016 Sum_probs=100.7
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003913 345 EGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESL 424 (787)
Q Consensus 345 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l 424 (787)
.|++++|.+.+++..+.... +...|..+...|.+.|++++|.+.|++..+.. +-+...|..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 36677777777777665432 46677777777777788888888887777653 22566777777777788888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHhhhCC
Q 003913 425 MKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNA---GNIEKAEEIFNHMHSDQ 501 (787)
Q Consensus 425 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~---g~~~~A~~l~~~m~~~~ 501 (787)
+++..+.. +.+...+..+..+|.+.|++++|.+.|++..+..+.+..++..+...|... |++++|.+.+++..+.+
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 87777653 335677777888888888888888888887775566777788888888888 88888888888887764
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.63 E-value=6.5e-07 Score=101.25 Aligned_cols=154 Identities=10% Similarity=-0.005 Sum_probs=122.5
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003913 380 IGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLA 459 (787)
Q Consensus 380 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~ 459 (787)
.|++++|.+.|++..+.. +-+...|..+...+...|++++|.+.+++..+.. +.+..++..+..+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999987653 2367889999999999999999999999999854 34688999999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHc
Q 003913 460 FSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSS---GDFVKAEKIYDLMCLK 536 (787)
Q Consensus 460 ~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~---g~~~~A~~~~~~m~~~ 536 (787)
|++..+..+.+...|..+...|.+.|++++|.+.|++..+.. +.+...+..+...+... |++++|.+.+++.++.
T Consensus 80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 999998667789999999999999999999999999999875 45788999999999999 9999999999999875
Q ss_pred C
Q 003913 537 K 537 (787)
Q Consensus 537 g 537 (787)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
No 106
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.63 E-value=3e-06 Score=82.83 Aligned_cols=179 Identities=8% Similarity=0.013 Sum_probs=125.0
Q ss_pred HHhhhccCCCHHHHHHHHHHHHHcCCC-CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHH
Q 003913 303 WLHSYQDNIDKERISLLKKEMQQAGFE-EG-KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPT--PAFVYKMEAYA 378 (787)
Q Consensus 303 ~~~~~~~~g~~~~a~~l~~~m~~~g~~-p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~li~~~~ 378 (787)
.+..+.+.|++++|...|+++.+..-. |. ...+..+..+|.+.|++++|...|+++.+..+.... .++..+..+|.
T Consensus 10 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~ 89 (225)
T 2yhc_A 10 TAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNM 89 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHH
Confidence 346788899999999999999885321 21 357788899999999999999999999987654222 24545555555
Q ss_pred H------------------cCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 003913 379 K------------------IGEFMKSLEIFREMQERLGSASV-PAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPS 439 (787)
Q Consensus 379 ~------------------~g~~~~A~~~~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 439 (787)
+ .|+.++|...|+++.+. .|+. ..+.+.... + .+...+ ...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----~------~~~~~~--------~~~ 149 (225)
T 2yhc_A 90 ALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----V------FLKDRL--------AKY 149 (225)
T ss_dssp HHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----H------HHHHHH--------HHH
T ss_pred hhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----H------HHHHHH--------HHH
Confidence 4 45677777777777664 2322 222211110 0 000000 011
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 003913 440 YINLTNMYLNLGMHDRLHLAFSECLEKCRPNR---TIYGIYLESLKNAGNIEKAEEIFNHMHSDQ 501 (787)
Q Consensus 440 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 501 (787)
...+...|.+.|++++|...|+.+++..+.+. ..+..+..+|.+.|+.++|.+.++.+...+
T Consensus 150 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 150 EYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 23567788999999999999999998554444 578889999999999999999999988875
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.63 E-value=5e-07 Score=92.20 Aligned_cols=165 Identities=8% Similarity=-0.005 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH-HHHHH
Q 003913 367 TPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSY-INLTN 445 (787)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~li~ 445 (787)
...+..+...+.+.|++++|...|++...... -+...+..+...+...|++++|..+++++... .|+.... .....
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~ 193 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHH
Confidence 34444555555666666666666666555421 14455555666666666666666666655443 2333222 22222
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHH
Q 003913 446 MYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVK 525 (787)
Q Consensus 446 ~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~ 525 (787)
.+.+.+..++|...+++..+..+.+...+..+...|...|++++|+..|+++.+...-..+...+..++..|...|+.++
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 34455556666666666666556667777777777777777777777777777653000115667777777777777777
Q ss_pred HHHHHHHHH
Q 003913 526 AEKIYDLMC 534 (787)
Q Consensus 526 A~~~~~~m~ 534 (787)
|...|++.+
T Consensus 274 a~~~~r~al 282 (287)
T 3qou_A 274 LASXYRRQL 282 (287)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776654
No 108
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.62 E-value=3e-06 Score=81.96 Aligned_cols=176 Identities=11% Similarity=0.036 Sum_probs=144.4
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----ChHHHHHHH
Q 003913 315 RISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIG----EFMKSLEIF 390 (787)
Q Consensus 315 ~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~ 390 (787)
+|++.|++..+.| +...+..+-..|...+++++|.+.|++..+.| +...+..|...|.. + +.++|.+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4566676666653 67788888888888999999999999998887 67888888888887 6 899999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 003913 391 REMQERLGSASVPAYHKIIELLCK----AEETELTESLMKEFVETGMK-PLMPSYINLTNMYLN----LGMHDRLHLAFS 461 (787)
Q Consensus 391 ~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~-p~~~t~~~li~~~~~----~g~~~~a~~~~~ 461 (787)
++..+.| +..++..|...|.. .+++++|...|++..+.|.. .+..++..|...|.. .+++++|...|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 9998765 67788888888877 78999999999999886621 127788899999988 789999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHhhhCC
Q 003913 462 ECLEKCRPNRTIYGIYLESLKNA-G-----NIEKAEEIFNHMHSDQ 501 (787)
Q Consensus 462 ~m~~~~~p~~~~~~~li~~~~~~-g-----~~~~A~~l~~~m~~~~ 501 (787)
+..+. ..+...+..|...|... | +.++|..+|++..+.|
T Consensus 154 ~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 98874 45666788888888764 3 8999999999999887
No 109
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.62 E-value=8e-07 Score=90.68 Aligned_cols=166 Identities=8% Similarity=-0.029 Sum_probs=135.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH-HH
Q 003913 330 EGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYH-KI 408 (787)
Q Consensus 330 p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~l 408 (787)
.+...+..+...+...|++++|...|++..+..+. +...+..+...|.+.|++++|...|++.... .|+..... ..
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHH
Confidence 34556777888889999999999999999988754 6788888999999999999999999988765 34544332 23
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHhcCC
Q 003913 409 IELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPN--RTIYGIYLESLKNAGN 486 (787)
Q Consensus 409 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~--~~~~~~li~~~~~~g~ 486 (787)
...+...+..++|...+++..+.. +.+...+..+...|...|++++|...|..+++..+.+ ...+..|+..|...|+
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 334667788888999999988864 4568899999999999999999999999998844444 7889999999999999
Q ss_pred HHHHHHHHHHhhh
Q 003913 487 IEKAEEIFNHMHS 499 (787)
Q Consensus 487 ~~~A~~l~~~m~~ 499 (787)
.++|...|++...
T Consensus 271 ~~~a~~~~r~al~ 283 (287)
T 3qou_A 271 GDALASXYRRQLY 283 (287)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 9999998887653
No 110
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.60 E-value=3.9e-07 Score=85.33 Aligned_cols=161 Identities=10% Similarity=0.040 Sum_probs=96.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhc
Q 003913 372 YKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNM-YLNL 450 (787)
Q Consensus 372 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~-~~~~ 450 (787)
.+...+.+.|++++|...|++..+.. +-+...+..+...+...|++++|...+++..+.. |+...+..+... +...
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhh
Confidence 34455555666666666666544331 1144555556666666666666666666554422 233222221111 1111
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 003913 451 GMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIY 530 (787)
Q Consensus 451 g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~ 530 (787)
+....|...++...+..+.+...+..+...|...|++++|...|+++.+...-..+...+..+...|...|+.++|...|
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 22234566777766655667788888888888888888888888888776411112557888888888888888888888
Q ss_pred HHHHH
Q 003913 531 DLMCL 535 (787)
Q Consensus 531 ~~m~~ 535 (787)
++.+.
T Consensus 168 ~~al~ 172 (176)
T 2r5s_A 168 RRQLY 172 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77653
No 111
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.60 E-value=5.4e-05 Score=83.19 Aligned_cols=333 Identities=11% Similarity=0.057 Sum_probs=157.1
Q ss_pred hhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCC-CHHHHH
Q 003913 160 NETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQG-CLDEAC 238 (787)
Q Consensus 160 ~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g-~~~~A~ 238 (787)
+..|+.+|+.+... ++ . |+++.|..+|++.... .|++..|..-+.-.. +.+ ..+...
T Consensus 11 i~~aR~vyer~l~~--~P-~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~---~~~~~~~~i~ 68 (493)
T 2uy1_A 11 LSSPSAIMEHARRL--YM-S--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVR---KVSQKKFKLY 68 (493)
T ss_dssp -CCHHHHHHHHHHH--HH-T--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHH---HHC----CTH
T ss_pred hHHHHHHHHHHHHH--CC-C--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHH---HhCchHHHHH
Confidence 66667777766654 22 2 6777788888777663 467777777776665 333 234566
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHH--------------
Q 003913 239 SIYNRMIQLGGYQP-RPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIW-------------- 303 (787)
Q Consensus 239 ~l~~~m~~~~g~~p-d~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~-------------- 303 (787)
.+|+.....-|..| +...|...+.-+... ...+++++.+..+|++.+.....--..++.....
T Consensus 69 ~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~--~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~ 146 (493)
T 2uy1_A 69 EVYEFTLGQFENYWDSYGLYKEYIEEEGKI--EDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIV 146 (493)
T ss_dssp HHHHHHHHHSTTCTTCHHHHHHHHHHTSSC--SSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHHHhc--hhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHH
Confidence 67777665434333 334454444432211 0122567777777777776321111111111100
Q ss_pred --------------------------------HhhhccC--C--C---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003913 304 --------------------------------LHSYQDN--I--D---KERISLLKKEMQQAGFEEGKEVLLSVLRVCAK 344 (787)
Q Consensus 304 --------------------------------~~~~~~~--g--~---~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~ 344 (787)
+..-... + + ..++..+|+++... ++-+...|...+..+.+
T Consensus 147 ~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~ 225 (493)
T 2uy1_A 147 GDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIG 225 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHH
Confidence 0000000 0 0 12233444444432 12233444444444445
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC---------CCC---CHHHHHHHHHHH
Q 003913 345 EGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERL---------GSA---SVPAYHKIIELL 412 (787)
Q Consensus 345 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------~~p---~~~t~~~li~~~ 412 (787)
.|+++.|..++++.... + .+...|. .|+...+.++. ++.+.+.- ..+ ....|...+..+
T Consensus 226 ~~~~~~ar~i~erAi~~-P-~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~ 296 (493)
T 2uy1_A 226 IGQKEKAKKVVERGIEM-S-DGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYV 296 (493)
T ss_dssp TTCHHHHHHHHHHHHHH-C-CSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhC-C-CcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHH
Confidence 55555555555555554 1 1222221 12222111111 12211110 000 012344444444
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003913 413 CKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLG-MHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAE 491 (787)
Q Consensus 413 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g-~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~ 491 (787)
.+.+..+.|..+|++. +.. ..+...|......-...+ +.+.|..+|+...+..+.+...|...++...+.|+.+.|.
T Consensus 297 ~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR 374 (493)
T 2uy1_A 297 LKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENAR 374 (493)
T ss_dssp HHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4555666666676666 211 123333332222222222 4666777777666644444555555666666667777777
Q ss_pred HHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003913 492 EIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (787)
Q Consensus 492 ~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (787)
.+|+++.+ ....|...+.--...|+.+.+.++++++.
T Consensus 375 ~l~er~~k------~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 375 ALFKRLEK------TSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHSCC------BHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHH------HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 77766621 35566666665566677666666666665
No 112
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.60 E-value=1.4e-07 Score=85.72 Aligned_cols=140 Identities=8% Similarity=-0.009 Sum_probs=72.4
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 003913 377 YAKIGEFMKSLEIFREMQERLGSA-SVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDR 455 (787)
Q Consensus 377 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 455 (787)
+...|++++|+..+...... .| +...+..+...|.+.|++++|.+.|++.++.. +-+..+|..+..+|.+.|++++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHH
Confidence 33445555555555544322 11 22334445555555566666666665555532 2245555556666666666666
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHhhhCCCCCCCHHHHHHHHHHHHcCC
Q 003913 456 LHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEI-FNHMHSDQTIGVNTRSCNIILSAYLSSG 521 (787)
Q Consensus 456 a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l-~~~m~~~~~~~p~~~t~~~li~~~~~~g 521 (787)
|...|+..++..+-+..+|..+...|.+.|++++|.+. +++..+.. |-+..+|......+...|
T Consensus 84 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~--P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 84 AVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF--PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhC
Confidence 66666665554444556666666666666665544433 35555542 334455555544444444
No 113
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.56 E-value=3.1e-07 Score=83.49 Aligned_cols=142 Identities=12% Similarity=0.021 Sum_probs=87.6
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 003913 342 CAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELT 421 (787)
Q Consensus 342 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 421 (787)
+...|++++|...+......... +...+-.+...|.+.|++++|++.|++..+... -+..+|..+..+|...|++++|
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCchHHH
Confidence 34456666666666665544321 223344566677777777777777777666532 2566677777777777777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 003913 422 ESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLA-FSECLEKCRPNRTIYGIYLESLKNAGN 486 (787)
Q Consensus 422 ~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~-~~~m~~~~~p~~~~~~~li~~~~~~g~ 486 (787)
...|++.++.. +-+..++..+...|.+.|+.++|.+. +++..+..+-+..+|......+.+.|+
T Consensus 85 ~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 85 VECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 77777776643 22466677777777777776655444 456665455566777766666665553
No 114
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.53 E-value=3.6e-06 Score=81.21 Aligned_cols=123 Identities=16% Similarity=0.102 Sum_probs=58.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003913 373 KMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGM 452 (787)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~ 452 (787)
+...+...|++++|.+.|++.. .|+...|..+...|...|++++|...+++..+.. +.+..++..+..+|...|+
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 4444445555555555554432 2344445555555555555555555555544432 2234444444455555555
Q ss_pred HHHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 003913 453 HDRLHLAFSECLEKCRPNR----------------TIYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 453 ~~~a~~~~~~m~~~~~p~~----------------~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (787)
+++|...|+...+..+.+. .+|..+...|.+.|++++|.+.|++..+.
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 5555555554444222222 44455555555555555555555555443
No 115
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.52 E-value=9.9e-07 Score=82.54 Aligned_cols=161 Identities=11% Similarity=0.082 Sum_probs=116.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HH
Q 003913 335 LLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIEL-LC 413 (787)
Q Consensus 335 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~-~~ 413 (787)
+..+...+...|++++|...+++..+..+. +...+..+...|.+.|++++|...|++..... |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 344556677888999999888887776543 57788888888889999999999988876553 344333222211 12
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHhcCCHHHHH
Q 003913 414 KAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCR--PNRTIYGIYLESLKNAGNIEKAE 491 (787)
Q Consensus 414 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~--p~~~~~~~li~~~~~~g~~~~A~ 491 (787)
..+...+|...+++..+.. +-+...+..+..++...|++++|...|+++++..+ .+...+..+...|...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2233345778888887743 33578888899999999999999999998887332 23668888999999999999999
Q ss_pred HHHHHhhh
Q 003913 492 EIFNHMHS 499 (787)
Q Consensus 492 ~l~~~m~~ 499 (787)
..|++...
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98887653
No 116
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.52 E-value=2.5e-06 Score=86.93 Aligned_cols=211 Identities=9% Similarity=-0.078 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----Hhc---CCHH
Q 003913 384 MKSLEIFREMQERLGSASVPAYHKIIELLCKAE--ETELTESLMKEFVETGMKPLMPSYINLTNMY----LNL---GMHD 454 (787)
Q Consensus 384 ~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~----~~~---g~~~ 454 (787)
++|++++++++..+.. +...|+.--..+...| .+++++++++.++... +-+..+++.--..+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 4566666666654221 3444555555555555 6666666666666533 22233343333333 333 5677
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCC------HHHH
Q 003913 455 RLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIE--KAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGD------FVKA 526 (787)
Q Consensus 455 ~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~------~~~A 526 (787)
+++.+++.+++..+.|..+|+.-.-.+.+.|.++ ++++.++++.+.+ +-|...|+.-...+.+.|. ++++
T Consensus 128 ~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 128 REFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccchhhhHHHH
Confidence 8888888887767778888888887788888777 8888888888875 4577788777777777776 7888
Q ss_pred HHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhhhhccchhhcc-eeEE--EEEc--
Q 003913 527 EKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDEKRKR-HMIR--FQFN-- 601 (787)
Q Consensus 527 ~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~--~~~~-- 601 (787)
++.+++++. .+|. +...|.-+...+...|....+. .... ..++
T Consensus 206 l~~~~~aI~----~~p~----------------------------n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 253 (306)
T 3dra_A 206 LNYVKDKIV----KCPQ----------------------------NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKD 253 (306)
T ss_dssp HHHHHHHHH----HCSS----------------------------CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGT
T ss_pred HHHHHHHHH----hCCC----------------------------CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCC
Confidence 888888876 4444 2455666555555555422211 1222 3333
Q ss_pred -cCCcccHHHHHHHHHHchhhcCCCccccC
Q 003913 602 -ENSRMHSVLRRYLYDQYHEWLHPSFKVSD 630 (787)
Q Consensus 602 -p~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 630 (787)
|.++.+...++++|.+.|+.++|...+..
T Consensus 254 ~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 254 QVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp EESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 66777788888888877776665555433
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.52 E-value=2.4e-06 Score=82.48 Aligned_cols=128 Identities=13% Similarity=0.019 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 003913 403 PAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLK 482 (787)
Q Consensus 403 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~ 482 (787)
..+..+...+...|++++|...|++. +.|+..++..+..+|.+.|++++|...|+...+..+.+..+|..+...|.
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 34556778888999999999999877 46788999999999999999999999999999866778999999999999
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCCH----------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 003913 483 NAGNIEKAEEIFNHMHSDQTIGVNT----------------RSCNIILSAYLSSGDFVKAEKIYDLMCLK 536 (787)
Q Consensus 483 ~~g~~~~A~~l~~~m~~~~~~~p~~----------------~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (787)
+.|++++|++.|++..+.. +.+. ..|..+..+|.+.|++++|...|++..+.
T Consensus 83 ~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQL--RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTT--TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HcccHHHHHHHHHHHHHhC--CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 9999999999999999863 2333 78999999999999999999999999963
No 118
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.49 E-value=1.6e-05 Score=81.26 Aligned_cols=168 Identities=10% Similarity=-0.036 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC--H
Q 003913 368 PAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASV-----PAYHKIIELLCKAEETELTESLMKEFVETGM---KPL--M 437 (787)
Q Consensus 368 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~ 437 (787)
..+...+..+...|++++|.+.+.+..+.....+. ..+..+...+...|++++|...+++..+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34455677888888888888888877765322111 2234455667778899999999988875321 122 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh---cCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC---CCCC-C
Q 003913 438 PSYINLTNMYLNLGMHDRLHLAFSECLE---KCRPN----RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ---TIGV-N 506 (787)
Q Consensus 438 ~t~~~li~~~~~~g~~~~a~~~~~~m~~---~~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~---~~~p-~ 506 (787)
.+|+.+...|...|++++|...|++..+ ..+.+ ..+|+.+...|.+.|++++|++.+++..+.. .... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 5888999999999999999999999873 22222 2588999999999999999999999876531 0111 1
Q ss_pred HHHHHHHHHHHHcCCCHHHH-HHHHHHHHH
Q 003913 507 TRSCNIILSAYLSSGDFVKA-EKIYDLMCL 535 (787)
Q Consensus 507 ~~t~~~li~~~~~~g~~~~A-~~~~~~m~~ 535 (787)
..+|..+...|.+.|++++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 67899999999999999999 777887664
No 119
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.49 E-value=4.6e-06 Score=76.55 Aligned_cols=130 Identities=12% Similarity=-0.042 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 003913 403 PAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLK 482 (787)
Q Consensus 403 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~ 482 (787)
..|..+...+...|++++|...+++..+.. +.+..++..+..+|...|++++|...+.+..+..+.+..+|..+...|.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 345666677777777777777777777643 3357777788888888888888888888887766677888888888888
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCCHHHHHHH--HHHHHcCCCHHHHHHHHHHHHH
Q 003913 483 NAGNIEKAEEIFNHMHSDQTIGVNTRSCNII--LSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 483 ~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~l--i~~~~~~g~~~~A~~~~~~m~~ 535 (787)
+.|++++|.+.|++..+.. +.+...+..+ +..+...|++++|++.+.....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 8999999999998888764 3455555433 3447778888888888887653
No 120
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.48 E-value=3.6e-06 Score=86.76 Aligned_cols=198 Identities=9% Similarity=0.017 Sum_probs=146.6
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 003913 310 NIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAK-EGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLE 388 (787)
Q Consensus 310 ~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 388 (787)
.|++++|.+++++..+..- .. +.+ .+++++|...|.+. ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 4567788888877665311 11 112 47777777776654 567888999999999
Q ss_pred HHHHHHHc----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--C-CCC--HHHHHHHHHHHHhcCCHHHHHH
Q 003913 389 IFREMQER----LGSA-SVPAYHKIIELLCKAEETELTESLMKEFVETG--M-KPL--MPSYINLTNMYLNLGMHDRLHL 458 (787)
Q Consensus 389 ~~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g--~-~p~--~~t~~~li~~~~~~g~~~~a~~ 458 (787)
.|.+..+. +-.+ -..+|+.+...|...|++++|...|++.++.- . .+. ..++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 99987643 1111 13478889999999999999999999877631 1 121 4678889999988 99999999
Q ss_pred HHHHHHhcCC--CC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC---CCCC-HHHHHHHHHHHHcCCCHHHHHH
Q 003913 459 AFSECLEKCR--PN----RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQT---IGVN-TRSCNIILSAYLSSGDFVKAEK 528 (787)
Q Consensus 459 ~~~~m~~~~~--p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~---~~p~-~~t~~~li~~~~~~g~~~~A~~ 528 (787)
.|++.++..+ .+ ..+++.+...|.+.|++++|+..|++..+... ..+. ..++..+...+...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999876211 11 46888999999999999999999999876310 1111 2377778888888999999999
Q ss_pred HHHHHH
Q 003913 529 IYDLMC 534 (787)
Q Consensus 529 ~~~~m~ 534 (787)
.|++.+
T Consensus 217 ~~~~al 222 (307)
T 2ifu_A 217 CVRESY 222 (307)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999987
No 121
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.48 E-value=1.4e-05 Score=81.51 Aligned_cols=163 Identities=9% Similarity=-0.016 Sum_probs=121.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCC-CCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHHH
Q 003913 373 KMEAYAKIGEFMKSLEIFREMQERLG-SASV----PAYHKIIELLCKAEETELTESLMKEFVETGMK-PL----MPSYIN 442 (787)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~ 442 (787)
.+..+...|++++|..++++..+... .|+. ..+..+...+...+++++|...+++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46778888999999999998876421 2221 12334666677778999999999998873222 22 347899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh---cC---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCCCCHHHHH
Q 003913 443 LTNMYLNLGMHDRLHLAFSECLE---KC---RPN-RTIYGIYLESLKNAGNIEKAEEIFNHMHSD----QTIGVNTRSCN 511 (787)
Q Consensus 443 li~~~~~~g~~~~a~~~~~~m~~---~~---~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~~~p~~~t~~ 511 (787)
+...|...|++++|...|+++++ .. .+. ..+|..+...|.+.|++++|++.+++..+. +....-..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999999999999999884 12 112 347889999999999999999999987652 21111267899
Q ss_pred HHHHHHHcCC-CHHHHHHHHHHHHH
Q 003913 512 IILSAYLSSG-DFVKAEKIYDLMCL 535 (787)
Q Consensus 512 ~li~~~~~~g-~~~~A~~~~~~m~~ 535 (787)
.+..+|.+.| ++++|.+.|++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 9999999999 47999999998874
No 122
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.45 E-value=7.2e-06 Score=74.20 Aligned_cols=98 Identities=10% Similarity=-0.008 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHH
Q 003913 437 MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSA 516 (787)
Q Consensus 437 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~ 516 (787)
...+..+...+.+.|++++|...|+..++..+.+...|..+..+|.+.|++++|+..|++..+.. |.+...|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--CCCcHHHHHHHHH
Confidence 55788888899999999999999999998778889999999999999999999999999999875 5568899999999
Q ss_pred HHcCCCHHHHHHHHHHHHHc
Q 003913 517 YLSSGDFVKAEKIYDLMCLK 536 (787)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~~ 536 (787)
|.+.|++++|+..|++.++.
T Consensus 114 ~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999874
No 123
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.45 E-value=7e-06 Score=70.85 Aligned_cols=96 Identities=16% Similarity=0.139 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 003913 404 AYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKN 483 (787)
Q Consensus 404 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~ 483 (787)
.|..+...+...|++++|..+++++.+.. +.+..++..+...|...|++++|...|+.+.+..+.+..++..+...|.+
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 89 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 33334444444444444444444444322 22333444444444444444444444444444333344444455555555
Q ss_pred cCCHHHHHHHHHHhhhC
Q 003913 484 AGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 484 ~g~~~~A~~l~~~m~~~ 500 (787)
.|++++|...|+++.+.
T Consensus 90 ~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 90 QGDYDEAIEYYQKALEL 106 (125)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHh
Confidence 55555555555554443
No 124
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.44 E-value=3.9e-06 Score=73.44 Aligned_cols=100 Identities=12% Similarity=0.121 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHH
Q 003913 438 PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAY 517 (787)
Q Consensus 438 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~ 517 (787)
..+......|.+.|++++|+..|++.++..+.+..+|..+..+|.+.|++++|++.|++.++.+ +.+...|..+..+|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD--SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh--hhhhHHHHHHHHHH
Confidence 4566777788888888888888888877667778888888888888888888888888888764 45677888888888
Q ss_pred HcCCCHHHHHHHHHHHHHcCCccCHH
Q 003913 518 LSSGDFVKAEKIYDLMCLKKYEIESA 543 (787)
Q Consensus 518 ~~~g~~~~A~~~~~~m~~~g~~~~p~ 543 (787)
...|++++|++.|++.++ ++|+
T Consensus 92 ~~~~~~~~A~~~~~~al~----l~P~ 113 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQ----VDPS 113 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH----HCTT
T ss_pred HHCCCHHHHHHHHHHHHH----HCcC
Confidence 888888888888888886 5555
No 125
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.41 E-value=1.2e-05 Score=73.78 Aligned_cols=129 Identities=11% Similarity=0.098 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003913 368 PAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMY 447 (787)
Q Consensus 368 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~ 447 (787)
..+..+...+...|++++|...|++..+.. +.+..+|..+...+...|++++|...+++..+.. +.+..++..+..+|
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 445556667777777777777777776652 2256677777777777777777777777777653 34566777777788
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHhh
Q 003913 448 LNLGMHDRLHLAFSECLEKCRPNRTIYGIYL--ESLKNAGNIEKAEEIFNHMH 498 (787)
Q Consensus 448 ~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li--~~~~~~g~~~~A~~l~~~m~ 498 (787)
...|++++|...|++..+..+.+...+..+. ..+.+.|++++|++.+.+..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 8888888888888887765555666664433 33667788888888877654
No 126
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.39 E-value=3.6e-05 Score=78.52 Aligned_cols=164 Identities=7% Similarity=0.015 Sum_probs=126.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CC----HHHH
Q 003913 336 LSVLRVCAKEGDVEDAEKTWLRLLESDNG-IPT----PAFVYKMEAYAKIGEFMKSLEIFREMQERLGS-AS----VPAY 405 (787)
Q Consensus 336 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~ 405 (787)
...+..+...|++++|.+++++..+.... ++. ..+..+...|...|++++|+..|++..+.... ++ ..+|
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 34467788999999999999998875432 221 13334677777788999999999999874222 23 3368
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH----c-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCC-HHH
Q 003913 406 HKIIELLCKAEETELTESLMKEFVE----T-GMKPL-MPSYINLTNMYLNLGMHDRLHLAFSECLE-----KCRPN-RTI 473 (787)
Q Consensus 406 ~~li~~~~~~g~~~~A~~l~~~m~~----~-g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~p~-~~~ 473 (787)
+.+...|...|++++|...++++.+ . +..+. ..+|..+...|.+.|++++|...+++.++ +..+. ..+
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 9999999999999999999999885 1 22222 34889999999999999999999999875 11222 678
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHHhhh
Q 003913 474 YGIYLESLKNAG-NIEKAEEIFNHMHS 499 (787)
Q Consensus 474 ~~~li~~~~~~g-~~~~A~~l~~~m~~ 499 (787)
|..+...|.+.| .+++|.+.|++...
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999999 57999999888754
No 127
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.38 E-value=1.7e-05 Score=68.35 Aligned_cols=114 Identities=17% Similarity=0.160 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003913 368 PAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMY 447 (787)
Q Consensus 368 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~ 447 (787)
..|..+...|...|++++|.+.|+++.... +.+..++..+...+...|++++|..+++++.+.. +.+..++..+...|
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 445555556666666666666666655442 2245555566666666666666666666665543 33455666666666
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 003913 448 LNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKN 483 (787)
Q Consensus 448 ~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~ 483 (787)
...|++++|...|+.+.+..+.+...+..+...+.+
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 666666666666666665444555555555555443
No 128
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.38 E-value=1.1e-05 Score=70.64 Aligned_cols=107 Identities=12% Similarity=-0.024 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 003913 404 AYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKN 483 (787)
Q Consensus 404 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~ 483 (787)
.+......|.+.|++++|...|++.++.. +.+..+|..+..+|.+.|++++|+..|++.++..+.+...|..+..+|..
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 44555566666666666666666666543 33456666666666666666666666666666555566677777777777
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCCHHHHHHH
Q 003913 484 AGNIEKAEEIFNHMHSDQTIGVNTRSCNII 513 (787)
Q Consensus 484 ~g~~~~A~~l~~~m~~~~~~~p~~~t~~~l 513 (787)
.|++++|++.|++..+.. |-+...+..|
T Consensus 94 ~~~~~~A~~~~~~al~l~--P~~~~a~~~l 121 (126)
T 4gco_A 94 MREWSKAQRAYEDALQVD--PSNEEAREGV 121 (126)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHC--cCCHHHHHHH
Confidence 777777777777776653 3344444433
No 129
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.35 E-value=0.00042 Score=71.23 Aligned_cols=241 Identities=10% Similarity=0.010 Sum_probs=177.8
Q ss_pred hHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC-ChHHHH
Q 003913 275 YLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEG-KEVLLSVLRVCAKEG-DVEDAE 352 (787)
Q Consensus 275 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g-~~~~A~ 352 (787)
++.+|...+..+...+- ..++|+++++++... .|+ ..+|+.--..+...| .++++.
T Consensus 52 ~y~~~~~~~r~~~~~~e--------------------~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL 109 (349)
T 3q7a_A 52 EYKDAMDYFRAIAAKEE--------------------KSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDEL 109 (349)
T ss_dssp HHHHHHHHHHHHHHTTC--------------------CSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCC--------------------CCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHH
Confidence 56666666666655443 245788888888774 454 445676666666777 599999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHc-C-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH--------HHH
Q 003913 353 KTWLRLLESDNGIPTPAFVYKMEAYAKI-G-EFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETE--------LTE 422 (787)
Q Consensus 353 ~~~~~m~~~~~~~~~~~~~~li~~~~~~-g-~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~--------~A~ 422 (787)
++++.++...++ +..+|+.-...+.+. + ++++++++++++.+...+ |..+|+--.-.+.+.|..+ +++
T Consensus 110 ~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eEL 187 (349)
T 3q7a_A 110 RLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSEL 187 (349)
T ss_dssp HHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHH
Confidence 999999988865 778888877777776 7 889999999999876443 7788877666666666666 899
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCH--------
Q 003913 423 SLMKEFVETGMKPLMPSYINLTNMYLNLGM-------HDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNI-------- 487 (787)
Q Consensus 423 ~l~~~m~~~g~~p~~~t~~~li~~~~~~g~-------~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~-------- 487 (787)
+.++++++.. .-|..+|+.....+.+.+. ++++.+.+.+.+...+-|...|+-+-..+.+.|+.
T Consensus 188 e~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~ 266 (349)
T 3q7a_A 188 DWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAI 266 (349)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccc
Confidence 9999999865 4578888888888888776 78899999888887788999999988888877753
Q ss_pred ------------HHHHHHHHHhhhCC----CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHH
Q 003913 488 ------------EKAEEIFNHMHSDQ----TIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESA 543 (787)
Q Consensus 488 ------------~~A~~l~~~m~~~~----~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~ 543 (787)
.+..+...++...+ .-.+....+..|+..|...|+.++|.++++.+.++ .||.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~---~dpi 335 (349)
T 3q7a_A 267 LPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE---YDQM 335 (349)
T ss_dssp GGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCGG
T ss_pred cccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---hChH
Confidence 44555555554431 01367889999999999999999999999999753 4554
No 130
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.35 E-value=8.7e-06 Score=70.95 Aligned_cols=116 Identities=13% Similarity=0.001 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 003913 404 AYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKN 483 (787)
Q Consensus 404 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~ 483 (787)
.+..+...+...|++++|...+++..+.. +.+..++..+...|...|++++|...+....+..+.+...|..+...|.+
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHH
Confidence 44444555555555555555555555432 22345555555555555555555555555555434455556666666666
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCC
Q 003913 484 AGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGD 522 (787)
Q Consensus 484 ~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~ 522 (787)
.|++++|...|++..+.. +.+...+..+...+.+.|+
T Consensus 93 ~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALELD--PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp TTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTT
T ss_pred hCCHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHhc
Confidence 666666666666655543 2345555555555554443
No 131
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.34 E-value=7.9e-06 Score=71.62 Aligned_cols=114 Identities=10% Similarity=0.014 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 003913 403 PAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLK 482 (787)
Q Consensus 403 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~ 482 (787)
..|..+...+...|++++|...+++..+.. +.+..++..+..+|...|++++|...+++..+..+.+..+|..+...|.
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 344444455555555555555555544422 2234445555555555555555555555555433444555555555555
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHc
Q 003913 483 NAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS 519 (787)
Q Consensus 483 ~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~ 519 (787)
+.|++++|.+.|++..+.. +.+...+..+...+.+
T Consensus 96 ~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLD--SSCKEAADGYQRCMMA 130 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHC--GGGTHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHH
Confidence 5555555555555555442 2233444444444433
No 132
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.29 E-value=9.8e-06 Score=77.23 Aligned_cols=133 Identities=8% Similarity=-0.056 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---cCCCC----
Q 003913 403 PAYHKIIELLCKAEETELTESLMKEFVE----TGMKP-LMPSYINLTNMYLNLGMHDRLHLAFSECLE---KCRPN---- 470 (787)
Q Consensus 403 ~t~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~---~~~p~---- 470 (787)
.++..+...+...|++++|...+++..+ .+..| ...++..+...|...|++++|...+.+..+ ....+
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 106 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA 106 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 3444444455555555555555544443 11111 234555566666666666666666666554 12212
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 471 RTIYGIYLESLKNAGNIEKAEEIFNHMHSD----QTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 471 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
..++..+...|...|++++|...+++.... +....-..++..+...+...|++++|.+.+++..+
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 107 SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 345666777777777777777777766532 20001123456777778888888888888877764
No 133
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.28 E-value=1.3e-05 Score=83.57 Aligned_cols=97 Identities=16% Similarity=0.050 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHH
Q 003913 437 MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSA 516 (787)
Q Consensus 437 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~ 516 (787)
..+|..+..+|.+.|++++|...|++.++..+.+..+|..+..+|...|++++|+..|++..+.. +.+...+..+...
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~ 273 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVC 273 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
Confidence 46788888888888888888888888888667788899999999999999999999999988874 5577888888889
Q ss_pred HHcCCCHHHH-HHHHHHHHH
Q 003913 517 YLSSGDFVKA-EKIYDLMCL 535 (787)
Q Consensus 517 ~~~~g~~~~A-~~~~~~m~~ 535 (787)
+.+.|+.++| ...|+.|..
T Consensus 274 ~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 274 QQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 9999999888 557777764
No 134
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.28 E-value=1.4e-05 Score=76.21 Aligned_cols=155 Identities=14% Similarity=0.102 Sum_probs=99.1
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCh
Q 003913 344 KEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQER----LGSA-SVPAYHKIIELLCKAEET 418 (787)
Q Consensus 344 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~ 418 (787)
..|++++|.++++.+.. .......++..+...|...|++++|...|++.... +..| ...++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45777777774444433 22234566777777777777777777777776541 1111 234566777777788888
Q ss_pred HHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCC----HHHHHHHHHHHHhcCC
Q 003913 419 ELTESLMKEFVET----GMKP--LMPSYINLTNMYLNLGMHDRLHLAFSECLE--KCRPN----RTIYGIYLESLKNAGN 486 (787)
Q Consensus 419 ~~A~~l~~~m~~~----g~~p--~~~t~~~li~~~~~~g~~~~a~~~~~~m~~--~~~p~----~~~~~~li~~~~~~g~ 486 (787)
++|...+++..+. +-.| ...++..+...+...|++++|...+++..+ ....+ ..++..+...|...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 8888877776652 1111 134577777788888888888888887764 11122 2345777888888899
Q ss_pred HHHHHHHHHHhhh
Q 003913 487 IEKAEEIFNHMHS 499 (787)
Q Consensus 487 ~~~A~~l~~~m~~ 499 (787)
+++|.+.+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9988888887764
No 135
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.28 E-value=0.00011 Score=74.83 Aligned_cols=167 Identities=8% Similarity=0.014 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHcCC---CCC--H
Q 003913 333 EVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPT-----PAFVYKMEAYAKIGEFMKSLEIFREMQERLG---SAS--V 402 (787)
Q Consensus 333 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~ 402 (787)
..+...+..+...|++++|.+.+.+..+....... ..+..+...|...|++++|+..|++..+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34556778889999999999999988876533211 2234466777888999999999999875321 122 4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CC-C
Q 003913 403 PAYHKIIELLCKAEETELTESLMKEFVET-GMKPL-----MPSYINLTNMYLNLGMHDRLHLAFSECLEKC-----RP-N 470 (787)
Q Consensus 403 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~-----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~-----~p-~ 470 (787)
.+|+.+...|...|++++|...+++..+. ...|+ ..++..+...|.+.|++++|...+++.++-. .. -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 58899999999999999999999998731 11122 2689999999999999999999999987511 11 1
Q ss_pred HHHHHHHHHHHHhcCCHHHH-HHHHHHhhh
Q 003913 471 RTIYGIYLESLKNAGNIEKA-EEIFNHMHS 499 (787)
Q Consensus 471 ~~~~~~li~~~~~~g~~~~A-~~l~~~m~~ 499 (787)
..+|..+...|.+.|++++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 67899999999999999999 777777653
No 136
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.28 E-value=4.2e-06 Score=84.92 Aligned_cols=194 Identities=9% Similarity=-0.042 Sum_probs=128.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003913 331 GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIE 410 (787)
Q Consensus 331 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 410 (787)
+...+..+...+.+.|++++|...|++..+.... +...|..+..+|.+.|++++|...+++..+.. +-+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4556777778888899999999999988887643 67888888889999999999999998887653 236778888888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHH
Q 003913 411 LLCKAEETELTESLMKEFVETGMKPL-MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEK 489 (787)
Q Consensus 411 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~ 489 (787)
+|...|++++|...|++..+.. |+ ...+...+....+. ..+...........+.+......+... ..|+.++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRI---AKKKRWNSIEERRIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHH---HHHHHHHHHHHTCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHH
Confidence 9999999999999998877632 11 00111111111111 111111111112345555555555333 2688999
Q ss_pred HHHHHHHhhhCCCCCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHH
Q 003913 490 AEEIFNHMHSDQTIGVNTRSCNIILSAYLSS-GDFVKAEKIYDLMCL 535 (787)
Q Consensus 490 A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~-g~~~~A~~~~~~m~~ 535 (787)
|++.+++..+.. +.+......+...+.+. +.+++|.++|+...+
T Consensus 154 A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 154 ELEECQRNHEGH--EDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHTTTSGGGTTT--SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhhhccc--cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999888764 33344444444445554 668889999988765
No 137
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.27 E-value=1.2e-05 Score=70.39 Aligned_cols=99 Identities=12% Similarity=0.050 Sum_probs=90.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHH
Q 003913 435 PLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIIL 514 (787)
Q Consensus 435 p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li 514 (787)
.+...+..+...+...|++++|...|++..+..+.+..+|..+...|...|++++|++.|++..+.. +.+...|..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE--PTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCchHHHHHHH
Confidence 3567889999999999999999999999998667789999999999999999999999999999874 55789999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHH
Q 003913 515 SAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~~ 535 (787)
..|.+.|++++|++.|++..+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999999999987
No 138
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.27 E-value=1.1e-05 Score=70.72 Aligned_cols=109 Identities=10% Similarity=0.085 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CCCC----HHHHHH
Q 003913 438 PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQT-IGVN----TRSCNI 512 (787)
Q Consensus 438 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~-~~p~----~~t~~~ 512 (787)
.++..+...|.+.|++++|+..|++.++..+.+..+|+.+..+|.+.|++++|++.|++.++... ..++ ..+|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45666777788888888888888887776667788888888888888888888888888766420 0111 246777
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHH
Q 003913 513 ILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKL 548 (787)
Q Consensus 513 li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l 548 (787)
+..++...|++++|++.|++.++. .++|+....+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l 122 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKKV 122 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHHH
Confidence 888888888888888888888753 2667654433
No 139
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.25 E-value=2.7e-05 Score=67.72 Aligned_cols=117 Identities=10% Similarity=-0.004 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003913 368 PAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMY 447 (787)
Q Consensus 368 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~ 447 (787)
..+..+...+...|++++|...|++..... +.+...|..+...+...|++++|...+++..+.. +.+...+..+...|
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 445555666666666666666666665542 2245566666666666666666666666666542 33456666666677
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 003913 448 LNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGN 486 (787)
Q Consensus 448 ~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~ 486 (787)
...|++++|...|+...+..+.+...+..+...+.+.|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 777777777777777666445566666666666666554
No 140
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.25 E-value=6.2e-06 Score=76.96 Aligned_cols=118 Identities=10% Similarity=0.138 Sum_probs=58.2
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHhcCCH--HHHH
Q 003913 415 AEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLES-LKNAGNI--EKAE 491 (787)
Q Consensus 415 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~-~~~~g~~--~~A~ 491 (787)
.|++++|...+++..+.. +.+..++..+...|...|++++|...|+...+..+.+...|..+... |...|++ ++|.
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHH
Confidence 344444444444444432 22344455555555555555555555555544333445555555555 4455555 5555
Q ss_pred HHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 492 EIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 492 ~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
..|++..+.. +.+...|..+...|...|++++|...|++..+
T Consensus 102 ~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 102 AMIDKALALD--SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 5555555543 23445555555555555555555555555554
No 141
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.24 E-value=2e-05 Score=71.30 Aligned_cols=97 Identities=9% Similarity=-0.060 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 003913 403 PAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLK 482 (787)
Q Consensus 403 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~ 482 (787)
..+..+...+.+.|++++|...|++..+.. +-+...|..+..+|...|++++|...|++..+..+.+...|..+..+|.
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 345555566666666666666666666543 3345666666666666677777777666666644556667777777777
Q ss_pred hcCCHHHHHHHHHHhhhC
Q 003913 483 NAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 483 ~~g~~~~A~~l~~~m~~~ 500 (787)
+.|++++|...|++..+.
T Consensus 116 ~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 777777777777777764
No 142
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.24 E-value=4e-06 Score=75.77 Aligned_cols=98 Identities=12% Similarity=-0.006 Sum_probs=78.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHH
Q 003913 436 LMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILS 515 (787)
Q Consensus 436 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~ 515 (787)
+...+..+...+.+.|++++|...|+...+..+.+...|..+..+|.+.|++++|+..|++..... +.+...|..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD--IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCchHHHHHHH
Confidence 345666777778888888888888888877667788888888888888888888888888888764 446778888888
Q ss_pred HHHcCCCHHHHHHHHHHHHH
Q 003913 516 AYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~~ 535 (787)
+|...|++++|+..|++.++
T Consensus 98 ~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 88888888888888888875
No 143
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.23 E-value=8.6e-06 Score=75.99 Aligned_cols=121 Identities=9% Similarity=0.043 Sum_probs=79.5
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCH--HH
Q 003913 379 KIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNM-YLNLGMH--DR 455 (787)
Q Consensus 379 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~-~~~~g~~--~~ 455 (787)
..|++++|...|++..+.. +.+...|..+...|...|++++|...|++..+.. +.+...+..+..+ |...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 4566666666666665542 2255666666677777777777777777766643 3355666666666 6677776 77
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 003913 456 LHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ 501 (787)
Q Consensus 456 a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 501 (787)
|...|+...+..+.+...|..+...|...|++++|...|++..+..
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 7777777776555667777777888888888888888888877754
No 144
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.23 E-value=1e-06 Score=89.60 Aligned_cols=98 Identities=7% Similarity=-0.076 Sum_probs=74.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHH
Q 003913 436 LMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILS 515 (787)
Q Consensus 436 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~ 515 (787)
+...+..+...+.+.|++++|...|...++..+.+...|..+...|.+.|++++|+..+++..+.. +.+...|..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 345666677777777777777777777776556677788888888888888888888888877764 456777788888
Q ss_pred HHHcCCCHHHHHHHHHHHHH
Q 003913 516 AYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~~ 535 (787)
+|...|++++|+..|++..+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 88888888888888887775
No 145
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.23 E-value=3e-05 Score=80.84 Aligned_cols=146 Identities=9% Similarity=0.002 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003913 332 KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIEL 411 (787)
Q Consensus 332 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 411 (787)
...+..+...|.+.|++++|...|++.++........ ..+.+.++ ... ....|..+..+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~-------------~~~~~~~~----~~~----~~~~~~nla~~ 205 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSF-------------SNEEAQKA----QAL----RLASHLNLAMC 205 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCC-------------CSHHHHHH----HHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccC-------------ChHHHHHH----HHH----HHHHHHHHHHH
Confidence 4556666666777777777777777666654321100 00000000 000 13456666666
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHH-
Q 003913 412 LCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKA- 490 (787)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A- 490 (787)
|.+.|++++|...+++.++.. +.+..+|..+..+|...|++++|...|++.++..+.+..++..+...+.+.|+.++|
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777766643 335667777777777777777777777777765566677777777777777777777
Q ss_pred HHHHHHhhh
Q 003913 491 EEIFNHMHS 499 (787)
Q Consensus 491 ~~l~~~m~~ 499 (787)
..+|+.|..
T Consensus 285 ~~~~~~~~~ 293 (336)
T 1p5q_A 285 KKLYANMFE 293 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 445555543
No 146
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.22 E-value=0.00095 Score=68.25 Aligned_cols=191 Identities=7% Similarity=-0.015 Sum_probs=144.4
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-hHHHHHH
Q 003913 348 VEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGE--FMKSLEIFREMQERLGSASVPAYHKIIELLCKAEE-TELTESL 424 (787)
Q Consensus 348 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~-~~~A~~l 424 (787)
++++..+++.+....++ +..+|+.-...+.+.|+ +++++.+++++.+...+ |..+|+.-.-.+...|. .+++++.
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 67888888888887755 77888877777777774 78899999998887544 78888887777778887 5888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc------
Q 003913 425 MKEFVETGMKPLMPSYINLTNMYLNL--------------GMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNA------ 484 (787)
Q Consensus 425 ~~~m~~~g~~p~~~t~~~li~~~~~~--------------g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~------ 484 (787)
+.++++.. +-|..+|+.....+.+. +.++++.+.+...+...+-|..+|+-+-..+.+.
T Consensus 168 ~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 168 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 88888865 44677777766666655 4578899999998887788999998777666665
Q ss_pred -----CCHHHHHHHHHHhhhCCCCCCCHHHHHHHHH-----HHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHH
Q 003913 485 -----GNIEKAEEIFNHMHSDQTIGVNTRSCNIILS-----AYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLD 549 (787)
Q Consensus 485 -----g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~-----~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~ 549 (787)
+.++++++.++++.+.. ||. .|+.+-. +....|..+++...+.++++ +||.-.++|.
T Consensus 247 ~~~~~~~l~~el~~~~elle~~---pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~----~Dp~r~~~y~ 313 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELE---PEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA----VDPMRAAYLD 313 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHC---TTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH----HCGGGHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhC---ccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH----hCcchhhHHH
Confidence 56899999999999864 553 3433222 22246888899999999997 8887544443
No 147
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.22 E-value=1.1e-05 Score=80.26 Aligned_cols=187 Identities=7% Similarity=-0.093 Sum_probs=118.3
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHHHcCChHHHHHHHHHHHHcCCCCC---------------
Q 003913 344 KEGDVEDAEKTWLRLLESDNGIPTPAFVYK-------MEAYAKIGEFMKSLEIFREMQERLGSAS--------------- 401 (787)
Q Consensus 344 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~--------------- 401 (787)
..++...|.+.|.++.+..+. ....|+.+ ...+...++..+++..+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 456777777777777766544 45666666 4555555555555555544333 1111
Q ss_pred -------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--HH
Q 003913 402 -------VPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPN--RT 472 (787)
Q Consensus 402 -------~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~--~~ 472 (787)
...+-.....+...|++++|.++|+.+...+ |+......+...|.+.+++++|+..|+...+...|. ..
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 1123345566777778888888777766533 444356666667778888888888887554311111 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 003913 473 IYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVN--TRSCNIILSAYLSSGDFVKAEKIYDLMCLK 536 (787)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~--~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (787)
.+..+..++.+.|++++|+..|++..... ..|. ...+.....++.+.|+.++|..+|+++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~-~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSP-AGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTST-TTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCC-CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 67777788888888888888888877432 3243 345666777788888888888888888863
No 148
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.20 E-value=6.5e-05 Score=63.82 Aligned_cols=95 Identities=9% Similarity=-0.022 Sum_probs=43.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Q 003913 405 YHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNA 484 (787)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~ 484 (787)
+..+...+...|++++|...+++..+.. +.+...+..+..+|...|++++|...++...+..+.+...|..+...|...
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 3344444444444444444444444322 223444444444444444444444444444443333444455555555555
Q ss_pred CCHHHHHHHHHHhhhC
Q 003913 485 GNIEKAEEIFNHMHSD 500 (787)
Q Consensus 485 g~~~~A~~l~~~m~~~ 500 (787)
|++++|.+.|++..+.
T Consensus 86 ~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 86 NRFEEAKRTYEEGLKH 101 (118)
T ss_dssp TCHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHc
Confidence 5555555555555443
No 149
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.18 E-value=0.0054 Score=67.15 Aligned_cols=203 Identities=11% Similarity=0.038 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003913 277 QQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWL 356 (787)
Q Consensus 277 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~ 356 (787)
+.+..+|++++...... .. .|+..+..+.+.|+.++|..++++.... |....... .|+.....++. ++
T Consensus 196 ~Rv~~~ye~al~~~p~~-~~--lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~ 263 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYA-EE--VYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YG 263 (493)
T ss_dssp HHHHHHHHHHHHHTTTC-HH--HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HH
T ss_pred HHHHHHHHHHHHcCCCC-HH--HHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HH
Confidence 34556777776654322 22 2333335567789999999999999987 54332211 23332222222 22
Q ss_pred HHHhCC---------C---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCChHHHH
Q 003913 357 RLLESD---------N---GIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYH--KIIELLCKAEETELTE 422 (787)
Q Consensus 357 ~m~~~~---------~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~li~~~~~~g~~~~A~ 422 (787)
.+.+.- . ......|...+..+.+.+.++.|..+|++. .. ...+...|. +.+...+ .++.+.|.
T Consensus 264 ~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~-~~d~~~ar 340 (493)
T 2uy1_A 264 DLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYA-TGSRATPY 340 (493)
T ss_dssp HHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHH-HCCSHHHH
T ss_pred HHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHH-CCChHHHH
Confidence 322210 0 001245666777777788999999999999 32 122444443 3333322 33699999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 003913 423 SLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (787)
Q Consensus 423 ~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (787)
.+|+...+.- .-+...+...++...+.|+.+.|..+|+.+. .....|...+..-...|+.+.+.++++++..
T Consensus 341 ~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 341 NIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999998853 2234556667787888999999999999973 3678899999888889999999999988874
No 150
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.18 E-value=2.7e-06 Score=81.20 Aligned_cols=130 Identities=15% Similarity=-0.049 Sum_probs=81.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CC--------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 003913 404 AYHKIIELLCKAEETELTESLMKEFVETGM-KP--------------LMPSYINLTNMYLNLGMHDRLHLAFSECLEKCR 468 (787)
Q Consensus 404 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p--------------~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 468 (787)
.+..+...+...|++++|...|++.++..- .| ...++..+..+|.+.|++++|...++..++..+
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 344444555555555555555555554210 01 025677777788888888888888888777556
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHH-HHHHHHHH
Q 003913 469 PNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAE-KIYDLMCL 535 (787)
Q Consensus 469 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~-~~~~~m~~ 535 (787)
.+..+|..+..+|...|++++|++.|++..+.. +-+...+..+...+...++.+++. ..|..|..
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASLN--PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 677888888888888888888888888887763 446677777777777777666666 45555543
No 151
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.17 E-value=9e-05 Score=76.20 Aligned_cols=151 Identities=11% Similarity=-0.043 Sum_probs=107.3
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-C-CHHHHH
Q 003913 381 GEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAE-ETELTESLMKEFVETGMKPLMPSYINLTNMYLNL-G-MHDRLH 457 (787)
Q Consensus 381 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~-g-~~~~a~ 457 (787)
+..++|++++++++..+.. +..+|+.--..+...| .+++++.+++.++... +-+..+|+.-...+.+. + ++++++
T Consensus 68 e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 3445666677666665322 4455666666666666 4777777777776643 33455666666666555 5 677888
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCC-------
Q 003913 458 LAFSECLEKCRPNRTIYGIYLESLKNAGNIE--------KAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGD------- 522 (787)
Q Consensus 458 ~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~------- 522 (787)
.+++.+++..+.|..+|+.-.-.+.+.|.++ ++++.++++.+.. +-|...|+.....+.+.++
T Consensus 146 ~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--p~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 146 EYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--GRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccccchHH
Confidence 8888888767778888887777766666665 8999999999886 5688899988888888876
Q ss_pred HHHHHHHHHHHHH
Q 003913 523 FVKAEKIYDLMCL 535 (787)
Q Consensus 523 ~~~A~~~~~~m~~ 535 (787)
++++++.+++++.
T Consensus 224 ~~eELe~~~~aI~ 236 (349)
T 3q7a_A 224 LQDELIYILKSIH 236 (349)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7889999998887
No 152
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.15 E-value=5.8e-05 Score=75.01 Aligned_cols=196 Identities=10% Similarity=-0.018 Sum_probs=143.6
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCC-HHHHHHH-------HHHHHhcCChHHHHHHHHHHHh------------CCCC----
Q 003913 309 DNIDKERISLLKKEMQQAGFEEG-KEVLLSV-------LRVCAKEGDVEDAEKTWLRLLE------------SDNG---- 364 (787)
Q Consensus 309 ~~g~~~~a~~l~~~m~~~g~~p~-~~t~~~l-------i~~~~~~g~~~~A~~~~~~m~~------------~~~~---- 364 (787)
..++...|.+.|.+..+. .|+ ...|..+ ...+...++..++...+..-.+ .|+-
T Consensus 18 ~~~d~~~A~~~F~~a~~~--dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNY--DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHh--ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 468899999999999885 454 4567766 4566666666666655555444 1210
Q ss_pred ----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HH
Q 003913 365 ----IPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPL--MP 438 (787)
Q Consensus 365 ----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~ 438 (787)
--...+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHH
Confidence 002344556788999999999999999887653 544466667778999999999999998554421 111 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHH
Q 003913 439 SYINLTNMYLNLGMHDRLHLAFSECLEKCR-PN--RTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNI 512 (787)
Q Consensus 439 t~~~li~~~~~~g~~~~a~~~~~~m~~~~~-p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ 512 (787)
.+..+..++.+.|++++|+..|++...+.. |. ......+..++.+.|+.++|..+|+++.... |+...+..
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~---P~~~~~~a 246 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH---PEPKVAAA 246 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS---CCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CcHHHHHH
Confidence 788899999999999999999999987443 53 4577888899999999999999999999964 66444333
No 153
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.15 E-value=3.4e-05 Score=68.15 Aligned_cols=99 Identities=8% Similarity=-0.049 Sum_probs=79.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHH
Q 003913 435 PLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIIL 514 (787)
Q Consensus 435 p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li 514 (787)
.+...+..+...+...|++++|...|...++..+.+...|..+...|...|++++|...|++..+.. +.+...|..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--chhHHHHHHHH
Confidence 3567777778888888888888888888777556678888888888888888888888888888764 45677888888
Q ss_pred HHHHcCCCHHHHHHHHHHHHH
Q 003913 515 SAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 515 ~~~~~~g~~~~A~~~~~~m~~ 535 (787)
.+|...|++++|+..|++..+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 888888888888888888876
No 154
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.14 E-value=1.2e-05 Score=72.70 Aligned_cols=97 Identities=10% Similarity=-0.039 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 003913 403 PAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLK 482 (787)
Q Consensus 403 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~ 482 (787)
..+..+...+...|++++|...|++..... +.+...+..+..+|...|++++|...|+..++..+.+..+|..+..+|.
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 345555566666666666666666666543 3355666666666666777777777776666644556667777777777
Q ss_pred hcCCHHHHHHHHHHhhhC
Q 003913 483 NAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 483 ~~g~~~~A~~l~~~m~~~ 500 (787)
..|++++|.+.|++..+.
T Consensus 101 ~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 777777777777776664
No 155
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.14 E-value=4.9e-06 Score=79.37 Aligned_cols=157 Identities=9% Similarity=0.028 Sum_probs=102.5
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC---------------HHHHHH
Q 003913 343 AKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSAS---------------VPAYHK 407 (787)
Q Consensus 343 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---------------~~t~~~ 407 (787)
...|+++.+.+.|+.-.+... .....+..+...+.+.|++++|...|++.......-. ...|..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEEKV-QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLN 93 (198)
T ss_dssp -------CCCSGGGCCHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHHHH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence 344555555555542221111 0234566677777788888888888888776421111 267888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCH
Q 003913 408 IIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNI 487 (787)
Q Consensus 408 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~ 487 (787)
+..+|...|++++|...+++.++.. +.+..++..+..+|...|++++|...|+...+..+.+..++..+...+...++.
T Consensus 94 la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 172 (198)
T 2fbn_A 94 LATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEA 172 (198)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999988864 456788999999999999999999999998886677888899998888888888
Q ss_pred HHHH-HHHHHhhhCC
Q 003913 488 EKAE-EIFNHMHSDQ 501 (787)
Q Consensus 488 ~~A~-~l~~~m~~~~ 501 (787)
+++. ..|..|...+
T Consensus 173 ~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 173 RKKDKLTFGGMFDKG 187 (198)
T ss_dssp HC-------------
T ss_pred HHHHHHHHHHHhccc
Confidence 7777 6666665544
No 156
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.13 E-value=4.6e-05 Score=66.31 Aligned_cols=97 Identities=11% Similarity=0.020 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHH
Q 003913 437 MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSA 516 (787)
Q Consensus 437 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~ 516 (787)
...+..+...+.+.|++++|...|.+.++..+.+...|..+..+|.+.|++++|+..|++..+.. +.+...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHH
Confidence 34566667777788888888888888777666678888888888888888888888888888764 4567788888888
Q ss_pred HHcCCCHHHHHHHHHHHHH
Q 003913 517 YLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~ 535 (787)
|...|++++|+..|++..+
T Consensus 82 ~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 82 QIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHH
Confidence 8888888888888888876
No 157
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.12 E-value=2.2e-05 Score=70.23 Aligned_cols=97 Identities=13% Similarity=-0.049 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHH
Q 003913 437 MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSA 516 (787)
Q Consensus 437 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~ 516 (787)
...+..+...+.+.|++++|...|+...+..+.+...|..+..+|.+.|++++|+..|++..... +.+...|..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD--INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCcHHHHHHHHH
Confidence 34555666677777888888888877777556677788888888888888888888888887764 4566777778888
Q ss_pred HHcCCCHHHHHHHHHHHHH
Q 003913 517 YLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~ 535 (787)
|...|++++|++.|++.++
T Consensus 96 ~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 8888888888888887775
No 158
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.10 E-value=4.9e-05 Score=66.07 Aligned_cols=97 Identities=14% Similarity=0.074 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC-------HHHH
Q 003913 438 PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVN-------TRSC 510 (787)
Q Consensus 438 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~-------~~t~ 510 (787)
..+..+...+...|++++|...|....+..+.+..++..+...|...|++++|...|++..... +.+ ..+|
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG--RENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc--cccchhHHHHHHHH
Confidence 3455566666666666666666666666445566667777777777777777777777666542 112 5667
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHc
Q 003913 511 NIILSAYLSSGDFVKAEKIYDLMCLK 536 (787)
Q Consensus 511 ~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (787)
..+...|.+.|++++|.+.|++..+.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 77777777777777777777777653
No 159
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.06 E-value=0.00011 Score=63.86 Aligned_cols=97 Identities=9% Similarity=-0.047 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 003913 403 PAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLK 482 (787)
Q Consensus 403 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~ 482 (787)
..|..+...+.+.|++++|...|++.++.. +.+...|..+..+|.+.|++++|...|++.++..+.+..+|..+..+|.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345555566666666666666666666543 3345666666777777777777777777766655556677777777777
Q ss_pred hcCCHHHHHHHHHHhhhC
Q 003913 483 NAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 483 ~~g~~~~A~~l~~~m~~~ 500 (787)
..|++++|.+.|++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 777777777777776653
No 160
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.06 E-value=4.7e-05 Score=69.89 Aligned_cols=97 Identities=12% Similarity=0.029 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHH
Q 003913 437 MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSA 516 (787)
Q Consensus 437 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~ 516 (787)
...+..+...|.+.|++++|...|++.++..+.+...|..+...|.+.|++++|+..|++..+.. +.+...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 34555566666666666666666666665445566666666666666666666666666666653 3456666666666
Q ss_pred HHcCCCHHHHHHHHHHHHH
Q 003913 517 YLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~ 535 (787)
|.+.|++++|+..|++.++
T Consensus 89 ~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 6666777777766666665
No 161
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.05 E-value=2.9e-05 Score=65.40 Aligned_cols=96 Identities=16% Similarity=0.026 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC--CHHHHHHHHH
Q 003913 438 PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGV--NTRSCNIILS 515 (787)
Q Consensus 438 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p--~~~t~~~li~ 515 (787)
..+..+...+...|++++|...|+...+..+.+..+|..+...|...|++++|.+.|++..+.. +. +...|..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI--EDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccchHHHHHHHHH
Confidence 3445555566666666666666666665445566666666667777777777777777766653 33 4666666666
Q ss_pred HHHcC-CCHHHHHHHHHHHHH
Q 003913 516 AYLSS-GDFVKAEKIYDLMCL 535 (787)
Q Consensus 516 ~~~~~-g~~~~A~~~~~~m~~ 535 (787)
.|.+. |++++|++.+++...
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHhCCHHHHHHHHHHHhh
Confidence 77777 777777777776665
No 162
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.05 E-value=3e-05 Score=67.11 Aligned_cols=94 Identities=12% Similarity=-0.049 Sum_probs=66.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHc
Q 003913 440 YINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLS 519 (787)
Q Consensus 440 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~ 519 (787)
+..+...+.+.|++++|...|+..++..+.+...|..+..++.+.|++++|+..|++..+.. +-+...|..+..+|.+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH
Confidence 34455566677777777777777766556677777777777777777777777777777754 3456677777777777
Q ss_pred CCCHHHHHHHHHHHHH
Q 003913 520 SGDFVKAEKIYDLMCL 535 (787)
Q Consensus 520 ~g~~~~A~~~~~~m~~ 535 (787)
.|++++|+..|++.++
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 7777777777777764
No 163
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.04 E-value=0.0002 Score=60.70 Aligned_cols=110 Identities=11% Similarity=0.008 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003913 367 TPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNM 446 (787)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~ 446 (787)
...+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3445556666666666666666666666542 2255566666666666677777777766666643 2345666667777
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 003913 447 YLNLGMHDRLHLAFSECLEKCRPNRTIYGIYL 478 (787)
Q Consensus 447 ~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li 478 (787)
|...|++++|...++...+..+.+...+..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 113 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 113 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 77777777777777776654444555554443
No 164
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.03 E-value=0.00074 Score=69.03 Aligned_cols=192 Identities=9% Similarity=0.002 Sum_probs=152.6
Q ss_pred HhcCChH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003913 343 AKEGDVE-DAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGE----------FMKSLEIFREMQERLGSASVPAYHKIIEL 411 (787)
Q Consensus 343 ~~~g~~~-~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 411 (787)
.+.|.++ +|.++++.++..++. +..+|+.--..+...|. +++++.+++.+.....+ +..+|+.-.-.
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3556655 789999999988765 56677754333333332 68899999999887444 88899888888
Q ss_pred HHhcCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc----
Q 003913 412 LCKAEE--TELTESLMKEFVETGMKPLMPSYINLTNMYLNLGM-HDRLHLAFSECLEKCRPNRTIYGIYLESLKNA---- 484 (787)
Q Consensus 412 ~~~~g~--~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~-~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~---- 484 (787)
+...+. +++++.+++++.+.. +-|..+|+.-...+.+.|. ++++.+.+..+++..+-|..+|+.....+.+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC
T ss_pred HhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcc
Confidence 888884 899999999999865 5578888888888888898 69999999999997788999999988877766
Q ss_pred ----------CCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcC-----------CCHHHHHHHHHHHHHcCCccCHH
Q 003913 485 ----------GNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSS-----------GDFVKAEKIYDLMCLKKYEIESA 543 (787)
Q Consensus 485 ----------g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g~~~~p~ 543 (787)
+.++++++.+++.+... |-|...|+-+-..+.+. +.++++++.++++.+ ..|+
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~--P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle----~~pd 270 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE----LEPE 270 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH----HCTT
T ss_pred ccccccccchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh----hCcc
Confidence 56899999999999875 66888998776666665 468899999999987 5565
No 165
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.02 E-value=0.00016 Score=64.53 Aligned_cols=97 Identities=15% Similarity=0.008 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 003913 402 VPAYHKIIELLCKAEETELTESLMKEFVETGMKPL----MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIY 477 (787)
Q Consensus 402 ~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~l 477 (787)
...+..+...+...|++++|...|++..+. .|+ ..++..+..+|...|++++|...++...+..+.+...|..+
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 344444455555555555555555555442 233 34455555555555555555555555554334455555555
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhC
Q 003913 478 LESLKNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 478 i~~~~~~g~~~~A~~l~~~m~~~ 500 (787)
...|...|++++|...|++..+.
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Confidence 56666666666666666665554
No 166
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.02 E-value=8.7e-05 Score=68.04 Aligned_cols=99 Identities=8% Similarity=-0.052 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 003913 402 VPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESL 481 (787)
Q Consensus 402 ~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~ 481 (787)
...|..+...+...|++++|...|++.++.. +-+...|..+..+|.+.|++++|+..|+..++..+.+...|..+...|
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4456666777777777777777777777643 335777788888888888888888888888775566788888888888
Q ss_pred HhcCCHHHHHHHHHHhhhCC
Q 003913 482 KNAGNIEKAEEIFNHMHSDQ 501 (787)
Q Consensus 482 ~~~g~~~~A~~l~~~m~~~~ 501 (787)
.+.|++++|.+.|++..+..
T Consensus 90 ~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhC
Confidence 88888888888888887753
No 167
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.00 E-value=4.9e-05 Score=66.07 Aligned_cols=107 Identities=11% Similarity=0.068 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCC----HHHHHH
Q 003913 404 AYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKC---RPN----RTIYGI 476 (787)
Q Consensus 404 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~---~p~----~~~~~~ 476 (787)
.|..+...+...|++++|...+++..+.. +.+..++..+...|...|++++|...+....+.. .++ ..+|..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34445555555555555555555555432 2345555556666666666666666666655411 222 556666
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHH
Q 003913 477 YLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIIL 514 (787)
Q Consensus 477 li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li 514 (787)
+...|.+.|++++|.+.|++..+.. |+...+..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~l~ 119 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEH---RTPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC---CCHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC---CCHHHHHHHH
Confidence 7777777777777777777776643 4554444443
No 168
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.00 E-value=9.4e-05 Score=65.18 Aligned_cols=99 Identities=10% Similarity=-0.024 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 003913 401 SVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLES 480 (787)
Q Consensus 401 ~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~ 480 (787)
+...|..+...+...|++++|...|++.++.. +.+...+..+..+|...|++++|...++..++..+.+...|..+...
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 44555666666666666666666666665543 33456666666666666666666666666666445566677777777
Q ss_pred HHhcCCHHHHHHHHHHhhhC
Q 003913 481 LKNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 481 ~~~~g~~~~A~~l~~~m~~~ 500 (787)
|...|++++|+..|++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 77777777777777766653
No 169
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.97 E-value=6.4e-05 Score=63.23 Aligned_cols=99 Identities=11% Similarity=0.073 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHH
Q 003913 402 VPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRP--NRTIYGIYLE 479 (787)
Q Consensus 402 ~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p--~~~~~~~li~ 479 (787)
...|..+...+...|++++|...+++..+.. +.+..++..+..+|...|++++|...|++..+..+. +..+|..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3445556666677777777777777766643 335666777777777777777777777777765455 6777888888
Q ss_pred HHHhc-CCHHHHHHHHHHhhhCC
Q 003913 480 SLKNA-GNIEKAEEIFNHMHSDQ 501 (787)
Q Consensus 480 ~~~~~-g~~~~A~~l~~~m~~~~ 501 (787)
.|.+. |++++|.+.|++.....
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcc
Confidence 88888 88888888888877764
No 170
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.96 E-value=0.0001 Score=65.67 Aligned_cols=96 Identities=10% Similarity=-0.010 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 003913 404 AYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKN 483 (787)
Q Consensus 404 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~ 483 (787)
.+..+...+.+.|++++|...|++..... +.+...|..+..+|.+.|++++|...|+..++..+.+...|..+..+|..
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 34445555566666666666666666543 33455666666666666666666666666666445566666667777777
Q ss_pred cCCHHHHHHHHHHhhhC
Q 003913 484 AGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 484 ~g~~~~A~~l~~~m~~~ 500 (787)
.|++++|.+.|++..+.
T Consensus 99 ~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 99 LGDLDGAESGFYSARAL 115 (142)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777766654
No 171
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.95 E-value=0.00032 Score=61.15 Aligned_cols=103 Identities=12% Similarity=0.091 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---cCCCC----HHHHHH
Q 003913 404 AYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE---KCRPN----RTIYGI 476 (787)
Q Consensus 404 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~---~~~p~----~~~~~~ 476 (787)
++..+...+.+.|++++|+..|++.++.. +-+..+|..+..+|.+.|++++|+..|++.++ ...++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34455555556666666666666555532 22355566666666666666666666666554 11221 235666
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHH
Q 003913 477 YLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSC 510 (787)
Q Consensus 477 li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~ 510 (787)
+...|...|++++|++.|++.... .||..+.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~---~~~~~~~ 119 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE---FRDPELV 119 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---SCCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh---CcCHHHH
Confidence 677777777777777777777664 3555443
No 172
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.94 E-value=0.00044 Score=74.62 Aligned_cols=196 Identities=14% Similarity=0.067 Sum_probs=137.7
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCH
Q 003913 340 RVCAKEGDVEDAEKTWLRLLESDNGIP----------------TPAFVYKMEAYAKIGEFMKSLEIFREMQERL-GSASV 402 (787)
Q Consensus 340 ~~~~~~g~~~~A~~~~~~m~~~~~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~ 402 (787)
..+.+.|++++|.+.|..+.+...... ..++..|...|.+.|++++|.+.+..+...- ..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 345567888888888877776543211 1246678899999999999999998875421 11122
Q ss_pred ----HHHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh---cC--C
Q 003913 403 ----PAYHKIIELLCKAEETELTESLMKEFVE----TGMKPL-MPSYINLTNMYLNLGMHDRLHLAFSECLE---KC--R 468 (787)
Q Consensus 403 ----~t~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~---~~--~ 468 (787)
...+.+-..+...|..++|..++..... .+..+. ..++..|...|...|++++|..++..... +. .
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 1233333444456889999998888764 233333 56788899999999999999999998775 11 1
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-C--CCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 469 P-NRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQT-I--GVN--TRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 469 p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~-~--~p~--~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
+ ...+|..++..|...|++++|..++++...... + +|. ...+..+...+...|++++|...|.+..+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1 256888999999999999999999988754210 1 111 35677777888899999999999888864
No 173
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.87 E-value=0.00014 Score=62.86 Aligned_cols=95 Identities=7% Similarity=-0.110 Sum_probs=68.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Q 003913 405 YHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNA 484 (787)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~ 484 (787)
+..+...+.+.|++++|...+++.++.. +.+...+..+..++...|++++|+..|++.++..+.+...|..+...|.+.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3445566677777777777777777643 335667777777777777777777777777765566777788888888888
Q ss_pred CCHHHHHHHHHHhhhC
Q 003913 485 GNIEKAEEIFNHMHSD 500 (787)
Q Consensus 485 g~~~~A~~l~~~m~~~ 500 (787)
|++++|+..|++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 8888888888877764
No 174
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.87 E-value=0.00043 Score=61.56 Aligned_cols=107 Identities=13% Similarity=0.122 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003913 367 TPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSAS----VPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYIN 442 (787)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 442 (787)
...+..+...+.+.|++++|...|++..+. .|+ ...|..+...|...|++++|...+++..+.. +.+...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence 334444444445555555555555544432 233 3444445555555555555555555555432 223445555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 003913 443 LTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGI 476 (787)
Q Consensus 443 li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~ 476 (787)
+..+|...|++++|...|++..+..+.+...+..
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 138 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEA 138 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 5555555555555555555555433334444433
No 175
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.84 E-value=0.0001 Score=66.61 Aligned_cols=97 Identities=18% Similarity=0.102 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCCCCHH
Q 003913 439 SYINLTNMYLNLGMHDRLHLAFSECLEK--CRPN----RTIYGIYLESLKNAGNIEKAEEIFNHMHSD----QTIGVNTR 508 (787)
Q Consensus 439 t~~~li~~~~~~g~~~~a~~~~~~m~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~~~p~~~ 508 (787)
++..+...|...|++++|...+++..+. ...+ ..++..+...|...|++++|.+.+++..+. +.......
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 4555555555666666666666555431 1111 345666677777777777777777766542 10011235
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 509 SCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 509 t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
++..+...|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 677777888888888888888887764
No 176
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.82 E-value=0.00018 Score=78.44 Aligned_cols=146 Identities=16% Similarity=0.143 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003913 367 TPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNM 446 (787)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~ 446 (787)
...|..+...|.+.|++++|...|++..+.. |+...+ .-+...+ ...+ ...+|..+..+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~-~~~~-------~~~~~~nla~~ 326 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGL-----------SEKESKA-SESF-------LLAAFLNLAMC 326 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSC-----------CHHHHHH-HHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccC-----------ChHHHHH-HHHH-------HHHHHHHHHHH
Confidence 4567777788888888888888888776542 111000 0000000 0000 14567778888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHH
Q 003913 447 YLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKA 526 (787)
Q Consensus 447 ~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A 526 (787)
|.+.|++++|+..|++.++..+.+..+|..+..+|...|++++|+..|++..+.. +-+...|..+..++.+.|+.++|
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--PQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888887666778888888888888888888888888888764 44566777888888888887776
Q ss_pred H-HHHHHHHH
Q 003913 527 E-KIYDLMCL 535 (787)
Q Consensus 527 ~-~~~~~m~~ 535 (787)
. ..+..|..
T Consensus 405 ~~~~~~~~f~ 414 (457)
T 1kt0_A 405 DRRIYANMFK 414 (457)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHh
Confidence 5 34555553
No 177
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.80 E-value=0.00019 Score=64.41 Aligned_cols=101 Identities=10% Similarity=-0.026 Sum_probs=74.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------CH-----HHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CC
Q 003913 439 SYINLTNMYLNLGMHDRLHLAFSECLEKCRP-------NR-----TIYGIYLESLKNAGNIEKAEEIFNHMHSD----QT 502 (787)
Q Consensus 439 t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p-------~~-----~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~ 502 (787)
.+......+.+.|++++|...|++.++-.+. +. ..|+.+..++.+.|++++|+..+++.++. +.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 3445556666677777777777776652222 33 38888888999999999999998888875 11
Q ss_pred CCCC-HHHH----HHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHH
Q 003913 503 IGVN-TRSC----NIILSAYLSSGDFVKAEKIYDLMCLKKYEIESA 543 (787)
Q Consensus 503 ~~p~-~~t~----~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~ 543 (787)
+.|+ ...| .....++...|++++|+..|++.++ ++|+
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle----l~p~ 134 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE----MIEE 134 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh----cCCC
Confidence 1354 5688 8999999999999999999999987 6665
No 178
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.80 E-value=0.00014 Score=65.69 Aligned_cols=131 Identities=14% Similarity=-0.014 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HH
Q 003913 369 AFVYKMEAYAKIGEFMKSLEIFREMQERLGS-AS----VPAYHKIIELLCKAEETELTESLMKEFVETGM-KPL----MP 438 (787)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~ 438 (787)
++..+...|...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..+..- .++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4445555555666666666666554432100 11 12455566666666666666666666554210 011 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 003913 439 SYINLTNMYLNLGMHDRLHLAFSECLEK--CRP----NRTIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (787)
Q Consensus 439 t~~~li~~~~~~g~~~~a~~~~~~m~~~--~~p----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (787)
++..+...|...|++++|...+++..+. ... ...++..+...|...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5666777777778888887777776641 111 134677778888888999999888887665
No 179
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.80 E-value=0.00021 Score=65.27 Aligned_cols=68 Identities=19% Similarity=0.189 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHH
Q 003913 470 NRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESA 543 (787)
Q Consensus 470 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~ 543 (787)
+..+|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|+..|++.++ ++|+
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~----l~p~ 129 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKRE--ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR----NHPA 129 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCGG
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh----cCCC
Confidence 45678888888888888888888888888864 55678888888888888888888888888886 5555
No 180
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.79 E-value=0.00029 Score=76.77 Aligned_cols=147 Identities=12% Similarity=0.012 Sum_probs=94.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003913 331 GKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIE 410 (787)
Q Consensus 331 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 410 (787)
....+..+...|.+.|++++|...|++.++....... + .-+... ++... ....|..+..
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~--~-----------~~~~~~----~~~~~----~~~~~~nla~ 325 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYG--L-----------SEKESK----ASESF----LLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS--C-----------CHHHHH----HHHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc--C-----------ChHHHH----HHHHH----HHHHHHHHHH
Confidence 3567888999999999999999999998875432110 0 000000 11111 2345666667
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHH
Q 003913 411 LLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKA 490 (787)
Q Consensus 411 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A 490 (787)
+|.+.|++++|+..+++.++.. +.+..+|..+..+|...|++++|...|++.++..+.+..+|..+...+.+.|+.++|
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777643 335677777777777778888888877777765555667777788888877777766
Q ss_pred H-HHHHHhhh
Q 003913 491 E-EIFNHMHS 499 (787)
Q Consensus 491 ~-~l~~~m~~ 499 (787)
. .++..|..
T Consensus 405 ~~~~~~~~f~ 414 (457)
T 1kt0_A 405 DRRIYANMFK 414 (457)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHh
Confidence 5 34555544
No 181
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.79 E-value=0.00073 Score=72.85 Aligned_cols=193 Identities=7% Similarity=-0.024 Sum_probs=137.0
Q ss_pred hccCCCHHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCH--
Q 003913 307 YQDNIDKERISLLKKEMQQAGFEEG----------------KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNG-IPT-- 367 (787)
Q Consensus 307 ~~~~g~~~~a~~l~~~m~~~g~~p~----------------~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~-- 367 (787)
+.+.|++++|.+.|....+..-... ...+..+...|.+.|++++|.+.+..+.+.-.. ++.
T Consensus 14 l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 93 (434)
T 4b4t_Q 14 LVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKT 93 (434)
T ss_dssp HHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHH
Confidence 3445677777777777765422110 124678899999999999999999887653211 111
Q ss_pred --HHHHHHHHHHHHcCChHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCC--C-
Q 003913 368 --PAFVYKMEAYAKIGEFMKSLEIFREMQE----RLGSAS-VPAYHKIIELLCKAEETELTESLMKEFVET--GMK--P- 435 (787)
Q Consensus 368 --~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~--p- 435 (787)
.+.+.+-..+...|+.++|..++++... .+..+. ..++..+...|...|++++|..+++++... +.. +
T Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 173 (434)
T 4b4t_Q 94 VKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPS 173 (434)
T ss_dssp HHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchh
Confidence 1233344444557899999999988753 233333 357788999999999999999999988762 211 1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---cCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 003913 436 LMPSYINLTNMYLNLGMHDRLHLAFSECLE---KCRPN----RTIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (787)
Q Consensus 436 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~---~~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (787)
...++..++..|...|++++|..+++.... ....+ ...+..+...+...|++++|...|.+..+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 174 LVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 256889999999999999999999998875 22222 35677778888889999999998887754
No 182
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.76 E-value=0.00028 Score=61.25 Aligned_cols=92 Identities=17% Similarity=0.068 Sum_probs=57.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCC---HHHHHHHHH
Q 003913 442 NLTNMYLNLGMHDRLHLAFSECLEKCRPNR---TIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVN---TRSCNIILS 515 (787)
Q Consensus 442 ~li~~~~~~g~~~~a~~~~~~m~~~~~p~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~---~~t~~~li~ 515 (787)
.+...+...|++++|...|+.+.+..+.+. ..+..+...|.+.|++++|...|++..+.. +.+ ...+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHH
Confidence 344555566666666666666655333333 466666667777777777777777766653 223 455666666
Q ss_pred HHHcCCCHHHHHHHHHHHHH
Q 003913 516 AYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 516 ~~~~~g~~~~A~~~~~~m~~ 535 (787)
+|.+.|++++|...|++..+
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777777765
No 183
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.73 E-value=0.00094 Score=57.81 Aligned_cols=92 Identities=11% Similarity=0.026 Sum_probs=53.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHH
Q 003913 408 IIELLCKAEETELTESLMKEFVETGMKPLM---PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPN---RTIYGIYLESL 481 (787)
Q Consensus 408 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~---~~~~~~li~~~ 481 (787)
+...+...|++++|...|+++.+.. +.+. ..+..+..+|.+.|++++|...|+...+..+.+ ..++..+...|
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3444555556666666665555532 1111 355555666666666666666666665533333 55566666667
Q ss_pred HhcCCHHHHHHHHHHhhhC
Q 003913 482 KNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 482 ~~~g~~~~A~~l~~~m~~~ 500 (787)
.+.|++++|...|+++.+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 7777777777777776665
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.72 E-value=4.6e-05 Score=65.38 Aligned_cols=85 Identities=15% Similarity=0.282 Sum_probs=42.3
Q ss_pred CChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003913 416 EETELTESLMKEFVETGM--KPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEI 493 (787)
Q Consensus 416 g~~~~A~~l~~~m~~~g~--~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l 493 (787)
|++++|...|++.++.+. +.+..++..+..+|...|++++|...|++.++..+-+..++..+..+|.+.|++++|+..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 445555555555554321 112344555555555555555555555555554444455555555555555555555555
Q ss_pred HHHhhhC
Q 003913 494 FNHMHSD 500 (787)
Q Consensus 494 ~~~m~~~ 500 (787)
|++....
T Consensus 84 ~~~al~~ 90 (117)
T 3k9i_A 84 LLKIIAE 90 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555543
No 185
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.72 E-value=7e-05 Score=82.08 Aligned_cols=117 Identities=13% Similarity=-0.009 Sum_probs=62.7
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003913 412 LCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAE 491 (787)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~ 491 (787)
+.+.|++++|.+.+++.++.. +.+..+|..+..+|.+.|++++|...+++.++..+.+..+|..+..+|.+.|++++|+
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 444555555555555555532 2235555666666666666666666666665544455666666666666666666666
Q ss_pred HHHHHhhhCCCCCCCHHHHHHHHHH--HHcCCCHHHHHHHHH
Q 003913 492 EIFNHMHSDQTIGVNTRSCNIILSA--YLSSGDFVKAEKIYD 531 (787)
Q Consensus 492 ~l~~~m~~~~~~~p~~~t~~~li~~--~~~~g~~~~A~~~~~ 531 (787)
+.|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 95 ~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 95 RDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6666665543 2233344444333 555666666666665
No 186
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.71 E-value=0.0018 Score=72.30 Aligned_cols=153 Identities=9% Similarity=-0.026 Sum_probs=118.9
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-
Q 003913 383 FMKSLEIFREMQERLGSASVPAYHKIIELLCKAEE----------TELTESLMKEFVETGMKPLMPSYINLTNMYLNLG- 451 (787)
Q Consensus 383 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g- 451 (787)
-++|++.++++...+.. +...|+.--.++...|+ ++++++.++++.+.. +-+..+|+.-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 45677777777766332 45566666666666666 788888888888754 346778888888888888
Q ss_pred -CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcC---------
Q 003913 452 -MHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAG-NIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSS--------- 520 (787)
Q Consensus 452 -~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~--------- 520 (787)
+++++.+.++++.+..+.|..+|+.-...+.+.| .++++++.++++++.. +-|...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~--p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT--CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC--CCCccHHHHHHHHHHhhccccccccc
Confidence 6799999999998877889999999888888888 8999999999999886 56888998888777663
Q ss_pred -----CCHHHHHHHHHHHHHcCCccCHH
Q 003913 521 -----GDFVKAEKIYDLMCLKKYEIESA 543 (787)
Q Consensus 521 -----g~~~~A~~~~~~m~~~g~~~~p~ 543 (787)
+.+++|++++++.+. .+|+
T Consensus 201 ~~~~~~~~~eel~~~~~ai~----~~P~ 224 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFF----TDPN 224 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHH----HCSS
T ss_pred ccccHHHHHHHHHHHHHHHh----hCCC
Confidence 567889999988886 5555
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.70 E-value=0.0003 Score=74.12 Aligned_cols=139 Identities=10% Similarity=0.037 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 003913 367 TPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKP-LMPSYINLTN 445 (787)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~ 445 (787)
...+..+...|.+.|++++|++.|++..+.- ++. ......+++.. ..| +..+|..+..
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~~~~~---------~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDADGAK---------LQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHHHHGG---------GHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChHHHHH---------HHHHHHHHHHHHHH
Confidence 4567778888888888888888888776520 000 00001111100 111 3456777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHH
Q 003913 446 MYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVK 525 (787)
Q Consensus 446 ~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~ 525 (787)
+|.+.|++++|+..+++.++..+.+..+|..+..+|.+.|++++|++.|++..+.. +.+...+..+...+.+.++.++
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~--P~~~~~~~~l~~~~~~~~~~~~ 359 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA--PEDKAIQAELLKVKQKIKAQKD 359 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888777556677788888888888888888888888887763 3456667677767666666665
Q ss_pred HHH
Q 003913 526 AEK 528 (787)
Q Consensus 526 A~~ 528 (787)
+.+
T Consensus 360 a~k 362 (370)
T 1ihg_A 360 KEK 362 (370)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 188
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.67 E-value=0.00012 Score=76.32 Aligned_cols=148 Identities=9% Similarity=-0.003 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003913 367 TPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNM 446 (787)
Q Consensus 367 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~ 446 (787)
...+..+...|.+.|++++|...|++.... .|+... +...++.+++...+. ..+|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 567778888999999999999999998765 244332 222333444332221 1378889999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHH-HHcCCCHHH
Q 003913 447 YLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSA-YLSSGDFVK 525 (787)
Q Consensus 447 ~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~-~~~~g~~~~ 525 (787)
|.+.|++++|...++..++..+.+..+|..+..+|...|++++|+..|++..+.. +-+...+..|... ....+..++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA--PDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988667789999999999999999999999999998864 3345566665555 345667788
Q ss_pred HHHHHHHHHH
Q 003913 526 AEKIYDLMCL 535 (787)
Q Consensus 526 A~~~~~~m~~ 535 (787)
+.++|.+|..
T Consensus 318 a~~~~~~~l~ 327 (338)
T 2if4_A 318 QKEMYKGIFK 327 (338)
T ss_dssp ----------
T ss_pred HHHHHHHhhC
Confidence 8889998875
No 189
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.62 E-value=0.00063 Score=62.02 Aligned_cols=65 Identities=23% Similarity=0.291 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 003913 437 MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ 501 (787)
Q Consensus 437 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 501 (787)
..+|..+..+|.+.|++++|...+...++..+.+...|..+..+|...|++++|...|++..+..
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 46788888888899999999999988888667788899999999999999999999999988864
No 190
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.62 E-value=0.0035 Score=69.88 Aligned_cols=175 Identities=9% Similarity=-0.045 Sum_probs=146.2
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003913 345 EGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGE----------FMKSLEIFREMQERLGSASVPAYHKIIELLCK 414 (787)
Q Consensus 345 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 414 (787)
...-++|.+.++++.+.++. +..+|+.--..+.+.|+ +++|++.++++.+...+ +..+|+.-.-.+.+
T Consensus 42 ~~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 42 GELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSR 119 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 34456789999999998765 67788877777777777 89999999999987544 78899988888889
Q ss_pred cC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc-------
Q 003913 415 AE--ETELTESLMKEFVETGMKPLMPSYINLTNMYLNLG-MHDRLHLAFSECLEKCRPNRTIYGIYLESLKNA------- 484 (787)
Q Consensus 415 ~g--~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g-~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~------- 484 (787)
.+ +++++++.++++.+.. +-|..+|+.-..++.+.| .++++.+.++++++..+-|..+|+.....+.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 120 LPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred cccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 99 6799999999999976 457889998888889999 899999999999987788999999998888774
Q ss_pred -------CCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHH
Q 003913 485 -------GNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFV 524 (787)
Q Consensus 485 -------g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~ 524 (787)
+.+++|++.+++..... |-|...|+-+-..+.+.++.+
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~--P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHC--SSCSHHHHHHHHHHSCCCCCS
T ss_pred ccccccHHHHHHHHHHHHHHHhhC--CCCccHHHHHHHHHhcCCCcc
Confidence 56899999999999875 567889998888887777643
No 191
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.61 E-value=0.00019 Score=78.69 Aligned_cols=92 Identities=13% Similarity=0.040 Sum_probs=83.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCC
Q 003913 442 NLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSG 521 (787)
Q Consensus 442 ~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g 521 (787)
.+...|.+.|++++|.+.|++.++..+.+..+|..+..+|.+.|++++|++.+++..+.. +.+..+|..+..+|.+.|
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcC
Confidence 334556788999999999999998767789999999999999999999999999999975 557899999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 003913 522 DFVKAEKIYDLMCL 535 (787)
Q Consensus 522 ~~~~A~~~~~~m~~ 535 (787)
++++|++.|++.++
T Consensus 89 ~~~eA~~~~~~al~ 102 (477)
T 1wao_1 89 KFRAALRDYETVVK 102 (477)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999999987
No 192
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.57 E-value=0.0007 Score=71.31 Aligned_cols=140 Identities=14% Similarity=0.043 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003913 332 KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIEL 411 (787)
Q Consensus 332 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 411 (787)
...+..+...+.+.|++++|.+.|++.++.-. . . ...-..+++.+ ... -+..+|..+..+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~--~---~-------~~~~~~~~~~~----~~~----~~~~~~~nla~~ 282 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVE--G---S-------RAAAEDADGAK----LQP----VALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--H---H-------HHHSCHHHHGG----GHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh--c---C-------ccccChHHHHH----HHH----HHHHHHHHHHHH
Confidence 56788889999999999999999998876310 0 0 00001111110 111 134566777777
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003913 412 LCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAE 491 (787)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~ 491 (787)
|.+.|++++|...+++.++.. +.+..+|..+..+|...|++++|...|++.++..+.+...+..+...+.+.++.+++.
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777643 3356777777778888888888888888777755567777777777777777666665
Q ss_pred H
Q 003913 492 E 492 (787)
Q Consensus 492 ~ 492 (787)
+
T Consensus 362 k 362 (370)
T 1ihg_A 362 K 362 (370)
T ss_dssp H
T ss_pred H
Confidence 4
No 193
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.49 E-value=0.00022 Score=61.06 Aligned_cols=84 Identities=11% Similarity=0.042 Sum_probs=37.8
Q ss_pred CChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003913 381 GEFMKSLEIFREMQERL--GSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHL 458 (787)
Q Consensus 381 g~~~~A~~~~~~m~~~g--~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 458 (787)
|++++|+..|++..+.+ -+-+...|..+...|...|++++|...|++.++.. +-+..++..+..+|.+.|++++|..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHH
Confidence 44444444444444332 01122344444455555555555555555554432 2234445555555555555555555
Q ss_pred HHHHHHh
Q 003913 459 AFSECLE 465 (787)
Q Consensus 459 ~~~~m~~ 465 (787)
.|++.++
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555444
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.48 E-value=0.0012 Score=59.23 Aligned_cols=61 Identities=13% Similarity=0.082 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHhhh
Q 003913 439 SYINLTNMYLNLGMHDRLHLAFSECLEK-------CRPNRTIY----GIYLESLKNAGNIEKAEEIFNHMHS 499 (787)
Q Consensus 439 t~~~li~~~~~~g~~~~a~~~~~~m~~~-------~~p~~~~~----~~li~~~~~~g~~~~A~~l~~~m~~ 499 (787)
.|..+..++.+.|++++|+..++..++- .+-+...| .....+|...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6777777777777777777777777664 55566778 8889999999999999999998865
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.47 E-value=0.00038 Score=72.43 Aligned_cols=149 Identities=11% Similarity=0.046 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003913 332 KEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIEL 411 (787)
Q Consensus 332 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 411 (787)
...+..+...+.+.|++++|...|++..+.. |+... +...|+.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 5678888888999999999999999988764 33221 223334444433221 1367788889
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHhcCCHHHH
Q 003913 412 LCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLES-LKNAGNIEKA 490 (787)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~-~~~~g~~~~A 490 (787)
|.+.|++++|...+++.++.. +.+..+|..+..+|...|++++|...|+..++..+.+..++..|... ....+..+++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998854 44688999999999999999999999999887545566677777666 3345677888
Q ss_pred HHHHHHhhhC
Q 003913 491 EEIFNHMHSD 500 (787)
Q Consensus 491 ~~l~~~m~~~ 500 (787)
..+|.+|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 8899988775
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.43 E-value=0.0013 Score=58.22 Aligned_cols=111 Identities=12% Similarity=0.073 Sum_probs=78.0
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 003913 416 EETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKN----AGNIEKAE 491 (787)
Q Consensus 416 g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~----~g~~~~A~ 491 (787)
++.++|...|++..+.| .|+.. |...|...+.+++|.+.|++..+. -+...+..|...|.. .+++++|.
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 34566777777776666 33333 555666666677777777776652 456777777777776 67888888
Q ss_pred HHHHHhhhCCCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHcC
Q 003913 492 EIFNHMHSDQTIGVNTRSCNIILSAYLS----SGDFVKAEKIYDLMCLKK 537 (787)
Q Consensus 492 ~l~~~m~~~~~~~p~~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~g 537 (787)
++|++..+.| +...+..|...|.. .++.++|.++|++..+.|
T Consensus 82 ~~~~~Aa~~g----~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN----DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 8888887776 66777777777777 778888888888887765
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.38 E-value=0.00013 Score=61.46 Aligned_cols=64 Identities=11% Similarity=0.067 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 003913 437 MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 437 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (787)
...+..+...+...|++++|...|++.++..+.+..+|..+..+|.+.|++++|++.|++..+.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3455556666666666666666666666544556666666666666666666666666666664
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.30 E-value=0.0032 Score=68.48 Aligned_cols=124 Identities=10% Similarity=-0.042 Sum_probs=80.1
Q ss_pred HHhcCChHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCC---C-HHHHHH
Q 003913 412 LCKAEETELTESLMKEFVET---GMKPL----MPSYINLTNMYLNLGMHDRLHLAFSECLE----KCRP---N-RTIYGI 476 (787)
Q Consensus 412 ~~~~g~~~~A~~l~~~m~~~---g~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~----~~~p---~-~~~~~~ 476 (787)
+...|++++|..++++.++. -+-|+ ..+++.|..+|...|++++|..++++.++ ...| + ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44566777777766666542 11122 45677777777777777777777777653 1222 2 346778
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhh-----CCCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 477 YLESLKNAGNIEKAEEIFNHMHS-----DQTIGVNT-RSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 477 li~~~~~~g~~~~A~~l~~~m~~-----~~~~~p~~-~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
|...|...|++++|+.++++..+ .|.-.|+. .+.+.+-.++...|.+++|+.+|.++++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888776653 23223333 3555666677788888888888888875
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.27 E-value=0.00029 Score=59.23 Aligned_cols=95 Identities=8% Similarity=-0.017 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------HHHHH
Q 003913 402 VPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPN------RTIYG 475 (787)
Q Consensus 402 ~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~------~~~~~ 475 (787)
...|..+...+...|++++|...|++.++.. +.+..++..+..+|.+.|++++|...|+..++..+.+ ...+.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 3455555666666666666666666666542 3345666666666666666666666666666533333 44555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHh
Q 003913 476 IYLESLKNAGNIEKAEEIFNHM 497 (787)
Q Consensus 476 ~li~~~~~~g~~~~A~~l~~~m 497 (787)
.+..++...|+.++|.+.|+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHhHhhhHhHHHHh
Confidence 5555555555555555444433
No 200
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.26 E-value=0.0022 Score=51.24 Aligned_cols=79 Identities=18% Similarity=0.140 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHH
Q 003913 438 PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAY 517 (787)
Q Consensus 438 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~ 517 (787)
..+..+...|...|++++|...|++..+..+.+..+|..+...|.+.|++++|...|++..+.. +.+...+..+...+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCHHHHHHHHHHH
Confidence 3445555555555666666666655555444455566666666666666666666666665543 23445555544444
Q ss_pred H
Q 003913 518 L 518 (787)
Q Consensus 518 ~ 518 (787)
.
T Consensus 88 ~ 88 (91)
T 1na3_A 88 Q 88 (91)
T ss_dssp H
T ss_pred H
Confidence 3
No 201
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.25 E-value=0.0022 Score=69.79 Aligned_cols=124 Identities=10% Similarity=0.097 Sum_probs=86.9
Q ss_pred HHHHcCChHHHHHHHHHHHHc---CCCC---C-HHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCC----HHHHH
Q 003913 376 AYAKIGEFMKSLEIFREMQER---LGSA---S-VPAYHKIIELLCKAEETELTESLMKEFVET---GMKPL----MPSYI 441 (787)
Q Consensus 376 ~~~~~g~~~~A~~~~~~m~~~---g~~p---~-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~----~~t~~ 441 (787)
.+-..|++++|+.++++.++. -+.| + ..+++.|..+|...|++++|..++++.++- -+.|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 455677888888887776532 1112 2 346788888888888888888888776641 12222 46788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh----cCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 003913 442 NLTNMYLNLGMHDRLHLAFSECLE----KCRPN----RTIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (787)
Q Consensus 442 ~li~~~~~~g~~~~a~~~~~~m~~----~~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (787)
.|...|...|++++|+.++++.++ ...|+ ..+.+.|-.++...|.+++|+.+|.++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888764 22333 34556777888888999999999998876
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.24 E-value=0.0015 Score=55.40 Aligned_cols=79 Identities=8% Similarity=-0.018 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003913 455 RLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (787)
Q Consensus 455 ~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (787)
.|...|+...+..+.+...|..+...|...|++++|+..|++..+.. +.+...|..+..+|...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD--PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35556666665455567777777777777777777777777777654 4456677777777777777777777777776
Q ss_pred H
Q 003913 535 L 535 (787)
Q Consensus 535 ~ 535 (787)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 5
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.22 E-value=0.0011 Score=56.20 Aligned_cols=80 Identities=11% Similarity=0.102 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 003913 420 LTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (787)
Q Consensus 420 ~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (787)
.|...|++..+.. +.+...+..+...|...|++++|...|+..++..+.+..+|..+...|...|++++|...|++..+
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455566655532 334666777777777777777777777777665556677777777777777777777777777765
Q ss_pred C
Q 003913 500 D 500 (787)
Q Consensus 500 ~ 500 (787)
.
T Consensus 82 ~ 82 (115)
T 2kat_A 82 A 82 (115)
T ss_dssp H
T ss_pred h
Confidence 3
No 204
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.08 E-value=0.00079 Score=60.17 Aligned_cols=85 Identities=12% Similarity=0.061 Sum_probs=48.9
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHH
Q 003913 449 NLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGN----------IEKAEEIFNHMHSDQTIGVNTRSCNIILSAYL 518 (787)
Q Consensus 449 ~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~ 518 (787)
+.+.+++|.+.++...+..+.+...|+.+..++...|+ +++|+..|++.++.. +-+..+|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld--P~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--PKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHH
Confidence 33445555555555555445555555555555555544 346666666666653 334556666666666
Q ss_pred cCC-----------CHHHHHHHHHHHHH
Q 003913 519 SSG-----------DFVKAEKIYDLMCL 535 (787)
Q Consensus 519 ~~g-----------~~~~A~~~~~~m~~ 535 (787)
..| ++++|++.|++.++
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHH
Confidence 553 66777777777665
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.03 E-value=0.018 Score=50.60 Aligned_cols=17 Identities=12% Similarity=-0.039 Sum_probs=9.4
Q ss_pred hhHHHHHHHHHHHHHcC
Q 003913 274 YYLQQAEFIFHNLLTSG 290 (787)
Q Consensus 274 g~~~~A~~~~~~m~~~~ 290 (787)
++.++|...|++..+.|
T Consensus 9 ~d~~~A~~~~~~aa~~g 25 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN 25 (138)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHcCC
Confidence 35555555555555555
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.01 E-value=0.0078 Score=47.91 Aligned_cols=79 Identities=15% Similarity=0.101 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 003913 404 AYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKN 483 (787)
Q Consensus 404 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~ 483 (787)
.|..+...+...|++++|...+++..+.. +.+..++..+..+|.+.|++++|...|++..+..+.+..++..+...+.+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 34444445555555555555555554432 22344555555555555555555555555555334455555555554443
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.90 E-value=0.0026 Score=56.81 Aligned_cols=95 Identities=11% Similarity=-0.007 Sum_probs=60.7
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 003913 416 EETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGM----------HDRLHLAFSECLEKCRPNRTIYGIYLESLKNAG 485 (787)
Q Consensus 416 g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~----------~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g 485 (787)
+.+++|...+++..+.. +-+...|+.+..++...++ +++|+..|++.++-.+.+..+|..+..+|...|
T Consensus 16 ~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 34444444454444432 2234444444444444433 458888888887766667788888888887764
Q ss_pred -----------CHHHHHHHHHHhhhCCCCCCCHHHHHHHH
Q 003913 486 -----------NIEKAEEIFNHMHSDQTIGVNTRSCNIIL 514 (787)
Q Consensus 486 -----------~~~~A~~l~~~m~~~~~~~p~~~t~~~li 514 (787)
++++|++.|++..+. .|+...|...+
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l---~P~~~~y~~al 131 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDE---QPDNTHYLKSL 131 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence 899999999999985 47765554433
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.86 E-value=0.0031 Score=51.92 Aligned_cols=61 Identities=13% Similarity=0.015 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 003913 438 PSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMH 498 (787)
Q Consensus 438 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 498 (787)
.++..+..+|.+.|++++|...|+..++..+.+..+|..+..+|.+.|++++|.+.|++..
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444444444444444444444443323334444444444444444444444444443
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.81 E-value=0.0049 Score=50.70 Aligned_cols=66 Identities=9% Similarity=-0.050 Sum_probs=59.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 468 RPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 468 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
+.+...|..+...|.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|++.|++.++
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4578899999999999999999999999999875 45678999999999999999999999999886
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.30 E-value=0.0063 Score=49.66 Aligned_cols=57 Identities=16% Similarity=0.163 Sum_probs=34.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 003913 444 TNMYLNLGMHDRLHLAFSECLEKCRPNRT-IYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 444 i~~~~~~g~~~~a~~~~~~m~~~~~p~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (787)
...+.+.|++++|...|+...+..+.+.. .|..+...|...|++++|++.|++..+.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34455566666666666666554444555 6666666666666666666666666654
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.09 E-value=0.066 Score=54.90 Aligned_cols=67 Identities=15% Similarity=0.043 Sum_probs=56.2
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 466 KCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 466 ~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
..+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.|++...
T Consensus 272 ~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln---~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 272 ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE---MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 346788888888777777799999999999998864 7888888888888899999999999988886
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.02 E-value=0.032 Score=59.49 Aligned_cols=85 Identities=9% Similarity=-0.080 Sum_probs=53.1
Q ss_pred CCHHHHHHHHHHHHh----cCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhh-----CCCCCCC-HHHHHHHHHH
Q 003913 451 GMHDRLHLAFSECLE----KCRPN----RTIYGIYLESLKNAGNIEKAEEIFNHMHS-----DQTIGVN-TRSCNIILSA 516 (787)
Q Consensus 451 g~~~~a~~~~~~m~~----~~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~~~~~p~-~~t~~~li~~ 516 (787)
|++++|+.++++.++ -..|+ ..+++.|..+|...|++++|+.++++..+ .|.-.|+ ..+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 455555555555443 11121 34567777777777777777777766543 2222333 3577888888
Q ss_pred HHcCCCHHHHHHHHHHHHH
Q 003913 517 YLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 517 ~~~~g~~~~A~~~~~~m~~ 535 (787)
|...|++++|+.++++.++
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 8888888888888887764
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.84 E-value=0.053 Score=57.82 Aligned_cols=85 Identities=6% Similarity=-0.061 Sum_probs=60.7
Q ss_pred cCChHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cC---CCC-HHHHHHHHH
Q 003913 415 AEETELTESLMKEFVET---GMKPL----MPSYINLTNMYLNLGMHDRLHLAFSECLE----KC---RPN-RTIYGIYLE 479 (787)
Q Consensus 415 ~g~~~~A~~l~~~m~~~---g~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~----~~---~p~-~~~~~~li~ 479 (787)
.|++++|..++++.++. -+.|+ ..+++.|..+|...|++++|+.++++.++ .. .|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46777777777776652 12232 45778888888888888888888887764 12 222 356888899
Q ss_pred HHHhcCCHHHHHHHHHHhhh
Q 003913 480 SLKNAGNIEKAEEIFNHMHS 499 (787)
Q Consensus 480 ~~~~~g~~~~A~~l~~~m~~ 499 (787)
.|...|++++|+.++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999998887754
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.80 E-value=0.086 Score=56.24 Aligned_cols=92 Identities=11% Similarity=-0.076 Sum_probs=63.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhh-----CCCCCCC-HHH
Q 003913 444 TNMYLNLGMHDRLHLAFSECLEK----CRPN----RTIYGIYLESLKNAGNIEKAEEIFNHMHS-----DQTIGVN-TRS 509 (787)
Q Consensus 444 i~~~~~~g~~~~a~~~~~~m~~~----~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~~~~~p~-~~t 509 (787)
+..+.+.|++++|+.++++.++. ..|+ ..+++.|...|...|++++|+.++++... .|.-.|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 33455666777777777776641 1222 35677788888888888888888877653 2222333 467
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 510 CNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 510 ~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
++.|...|...|++++|+.++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88888889999999999888888764
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.76 E-value=0.032 Score=45.27 Aligned_cols=63 Identities=17% Similarity=0.225 Sum_probs=33.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHH
Q 003913 410 ELLCKAEETELTESLMKEFVETGMKPLMP-SYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTI 473 (787)
Q Consensus 410 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~ 473 (787)
..+...|++++|...+++.++.. +.+.. .+..+..+|...|++++|...|+..++..+.+..+
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 71 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL 71 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence 34455555666666665555532 22344 55555666666666666666666655533333333
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.66 E-value=0.12 Score=55.07 Aligned_cols=91 Identities=12% Similarity=0.056 Sum_probs=65.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcC---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCC---CC-HHH
Q 003913 409 IELLCKAEETELTESLMKEFVETG---MKPL----MPSYINLTNMYLNLGMHDRLHLAFSECLE----KCR---PN-RTI 473 (787)
Q Consensus 409 i~~~~~~g~~~~A~~l~~~m~~~g---~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~----~~~---p~-~~~ 473 (787)
+..+.+.|++++|..++++.++.. +.|+ ..+++.|..+|...|++++|+.++++.++ -.. |+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556678888888887777521 2232 45778888888888888888888887764 122 22 356
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhh
Q 003913 474 YGIYLESLKNAGNIEKAEEIFNHMHS 499 (787)
Q Consensus 474 ~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (787)
++.|...|...|++++|+.++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88899999999999999998887754
No 217
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.42 E-value=0.072 Score=46.93 Aligned_cols=85 Identities=11% Similarity=0.022 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhhCCCCCC--CHHHHHHHHHHHHcCCCHHHHH
Q 003913 453 HDRLHLAFSECLEKCRPNRTIYGIYLESLKNAG---NIEKAEEIFNHMHSDQTIGV--NTRSCNIILSAYLSSGDFVKAE 527 (787)
Q Consensus 453 ~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~~~~~p--~~~t~~~li~~~~~~g~~~~A~ 527 (787)
+..+++.|.+..+...++..+...+..++++.+ ++++++.+|++..+.+ .| +...+..|.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~--~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CccchHHHHHHHHHHHHHccCHHHHH
Confidence 345555666555534567777777777888877 5668888888877764 24 3456666677778888888888
Q ss_pred HHHHHHHHcCCccCHH
Q 003913 528 KIYDLMCLKKYEIESA 543 (787)
Q Consensus 528 ~~~~~m~~~g~~~~p~ 543 (787)
++++.+++ ++|+
T Consensus 92 ~y~~~lL~----ieP~ 103 (152)
T 1pc2_A 92 KYVRGLLQ----TEPQ 103 (152)
T ss_dssp HHHHHHHH----HCTT
T ss_pred HHHHHHHh----cCCC
Confidence 88888887 6664
No 218
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.37 E-value=0.31 Score=49.96 Aligned_cols=75 Identities=12% Similarity=-0.006 Sum_probs=62.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHH
Q 003913 434 KPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNI 512 (787)
Q Consensus 434 ~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ 512 (787)
..+..+|..+...+...|++++|...+++++... |+...|..+...+.-.|+.++|.+.|++....+ |...||.-
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln-~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~---P~~~t~~~ 348 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE-MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR---PGANTLYW 348 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CSHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCcChHHH
Confidence 5578888888888888899999999999998832 788888888899999999999999999998864 77777643
No 219
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.24 E-value=1.2 Score=37.74 Aligned_cols=137 Identities=15% Similarity=0.035 Sum_probs=80.8
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003913 380 IGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLA 459 (787)
Q Consensus 380 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~ 459 (787)
.|.+++..++..+.... .+..-||-+|--....-+-+-..++++..-+ -.| ...+|++......
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFD----------is~C~NlKrVi~C 83 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFD----------LDKCQNLKSVVEC 83 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSC----------GGGCSCTHHHHHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcC----------cHhhhcHHHHHHH
Confidence 45556666666665543 2444555555444444444444444443322 111 1233444444444
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC
Q 003913 460 FSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKY 538 (787)
Q Consensus 460 ~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 538 (787)
+-.+ ..+....+..++.+..+|+-++-.+++..+... .+|++.....+..||.+-|+..+|.+++.+..++|+
T Consensus 84 ~~~~----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n--~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 84 GVIN----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN--NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHT----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHh----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc--CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 4332 234556666777788888888888888886544 367777777888888888888888888888887774
No 220
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.13 E-value=0.25 Score=57.71 Aligned_cols=100 Identities=15% Similarity=0.112 Sum_probs=47.3
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003913 413 CKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEE 492 (787)
Q Consensus 413 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 492 (787)
...|++++|.++.+.+ .+...|..|...+.+.++++.|++.|..+.. |..+...|...|+.+...+
T Consensus 663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d--------~~~l~~l~~~~~~~~~~~~ 728 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD--------LESLFLLHSSFNNKEGLVT 728 (814)
T ss_dssp HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC--------HHHHHHHHHHTTCHHHHHH
T ss_pred hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC--------hhhhHHHHHHcCCHHHHHH
Confidence 3455555555553321 2345556666666666666666666655431 2233344444455544444
Q ss_pred HHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 003913 493 IFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLM 533 (787)
Q Consensus 493 l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m 533 (787)
+-+.....| + ++.-..+|.+.|++++|++++.++
T Consensus 729 ~~~~a~~~~----~---~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 729 LAKDAETTG----K---FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHTT----C---HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHcC----c---hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 444444433 1 122233344445555555554443
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.75 E-value=0.15 Score=41.02 Aligned_cols=67 Identities=12% Similarity=0.044 Sum_probs=41.8
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 003913 468 RPNRTIYGIYLESLKNAGN---IEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLK 536 (787)
Q Consensus 468 ~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (787)
+.|...+..+..++...++ .++|..+|++..+.. +-+......+...+.+.|++++|+..|+++.+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d--p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE--PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4455666666666654443 566777777666654 445566666666666777777777777776653
No 222
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.72 E-value=0.39 Score=56.02 Aligned_cols=28 Identities=14% Similarity=0.064 Sum_probs=14.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003913 366 PTPAFVYKMEAYAKIGEFMKSLEIFREM 393 (787)
Q Consensus 366 ~~~~~~~li~~~~~~g~~~~A~~~~~~m 393 (787)
+...|..|...+.+.|+++.|.+.|.++
T Consensus 680 ~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 680 AEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3445555555555555555555555544
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.66 E-value=0.18 Score=40.55 Aligned_cols=67 Identities=9% Similarity=0.035 Sum_probs=43.7
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 003913 435 PLMPSYINLTNMYLNLGM---HDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ 501 (787)
Q Consensus 435 p~~~t~~~li~~~~~~g~---~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 501 (787)
.|...+..+..++...++ .++|..++++.++..+.++.+...+...+.+.|++++|+..|+++.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 345555555555543332 5667777777666556667777777777777777777777777777654
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.59 E-value=0.2 Score=44.15 Aligned_cols=83 Identities=11% Similarity=-0.053 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhcCCHHHHHH
Q 003913 418 TELTESLMKEFVETGMKPLMPSYINLTNMYLNLG---MHDRLHLAFSECLEKCRP--NRTIYGIYLESLKNAGNIEKAEE 492 (787)
Q Consensus 418 ~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g---~~~~a~~~~~~m~~~~~p--~~~~~~~li~~~~~~g~~~~A~~ 492 (787)
+..+.+.|.+..+.| .++..+...+..++++.+ +.+++..+++...+...| +...+-.|.-+|.+.|++++|.+
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 445566666666655 477888888888888877 566888888888774334 45666777788899999999999
Q ss_pred HHHHhhhCC
Q 003913 493 IFNHMHSDQ 501 (787)
Q Consensus 493 l~~~m~~~~ 501 (787)
.++.+.+..
T Consensus 93 y~~~lL~ie 101 (152)
T 1pc2_A 93 YVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhcC
Confidence 999998853
No 225
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.26 E-value=2 Score=38.80 Aligned_cols=104 Identities=13% Similarity=0.192 Sum_probs=60.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 003913 374 MEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMH 453 (787)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 453 (787)
.....+.|+++.|.++.+++ -+...|..|.......|+++-|.+.|.+..+ +..|.-.|.-.|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence 34455677777777776554 2666777777777777777777777766543 33445555556666
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 003913 454 DRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHM 497 (787)
Q Consensus 454 ~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 497 (787)
+...++-+...... -+|.....+.-.|+++++.++|.+.
T Consensus 77 e~L~kla~iA~~~g-----~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE-----DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHHHTT-----CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCc-----cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 55544433332211 1333344445567777777666544
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.00 E-value=0.88 Score=37.15 Aligned_cols=62 Identities=10% Similarity=0.079 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 003913 439 SYINLTNMYLNLGMHDRLHLAFSECLEK-------CRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 439 t~~~li~~~~~~g~~~~a~~~~~~m~~~-------~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (787)
-+..|...+.+.|++..|...|+...+. ..+...++..|..+|.+.|++++|...+++..+.
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3344445555555555555555554431 1123445555555555555555555555555543
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=92.55 E-value=1.3 Score=36.16 Aligned_cols=67 Identities=13% Similarity=0.023 Sum_probs=32.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCH
Q 003913 405 YHKIIELLCKAEETELTESLMKEFVETG------MKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNR 471 (787)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~l~~~m~~~g------~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~ 471 (787)
+..|...+.+.|+++.|...|+...+.- -.+...++..|..+|.+.|+++.|...+++..+..+-+.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~ 80 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ 80 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence 3344444444444444444444443310 012344555556666666666666666665554333333
No 228
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=92.46 E-value=4.5 Score=34.36 Aligned_cols=134 Identities=11% Similarity=0.142 Sum_probs=86.9
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHhcCChHH
Q 003913 344 KEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPA---YHKIIELLCKAEETEL 420 (787)
Q Consensus 344 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~li~~~~~~g~~~~ 420 (787)
-.|.++++.++..+..... +..-||.+|--....-+.+-..++++.+-+- -|... .-.++..|++.+.
T Consensus 19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis~C~NlKrVi~C~~~~n~--- 89 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLDKCQNLKSVVECGVINNT--- 89 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGGGCSCTHHHHHHHHHTTC---
T ss_pred HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCcHhhhcHHHHHHHHHHhcc---
Confidence 4688888888888777654 5566666666666555655555555554321 22221 1223344443332
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 003913 421 TESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 421 A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (787)
+..-+...++.....|.-+.-.+++..+....+|++...-.+..+|.+.|+..+|.+++.+..++
T Consensus 90 ---------------~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 90 ---------------LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp ---------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ---------------hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 22334455666777788888888888876666778888888888888888888888888888888
Q ss_pred C
Q 003913 501 Q 501 (787)
Q Consensus 501 ~ 501 (787)
|
T Consensus 155 G 155 (172)
T 1wy6_A 155 G 155 (172)
T ss_dssp T
T ss_pred h
Confidence 8
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.17 E-value=0.95 Score=38.25 Aligned_cols=81 Identities=7% Similarity=-0.036 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHhhhCCCCCC--CHHHHHHHHHHHHcCCCHHHHH
Q 003913 453 HDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEK---AEEIFNHMHSDQTIGV--NTRSCNIILSAYLSSGDFVKAE 527 (787)
Q Consensus 453 ~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~---A~~l~~~m~~~~~~~p--~~~t~~~li~~~~~~g~~~~A~ 527 (787)
+..+.+.|........++..+--.+..++++..+... ++.++++....+ .| .......|.-|+.+.|++++|.
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~--~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS--CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 3444555555444234666666666677777665444 777777777654 23 2334445555777888888888
Q ss_pred HHHHHHHH
Q 003913 528 KIYDLMCL 535 (787)
Q Consensus 528 ~~~~~m~~ 535 (787)
++++.+++
T Consensus 95 ~~~~~lL~ 102 (126)
T 1nzn_A 95 KYVRGLLQ 102 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888776
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=91.77 E-value=7.1 Score=35.14 Aligned_cols=101 Identities=9% Similarity=0.045 Sum_probs=74.9
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 003913 342 CAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELT 421 (787)
Q Consensus 342 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 421 (787)
..+.|+++.|.++.+.+ -+...|..|.+.....|+++-|.+.|.+..+ +..+.-.|...|+.+.-
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 34789999999987766 2678999999999999999999999987653 23455556667887776
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003913 422 ESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSEC 463 (787)
Q Consensus 422 ~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m 463 (787)
..+-+.....| -++.....+.-.|+++++.++|.+.
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 66666555555 2566667777889998888877554
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=90.90 E-value=1.6 Score=36.88 Aligned_cols=85 Identities=13% Similarity=0.009 Sum_probs=59.6
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhcCCC--CHHHHHHHHHHHHhcCCHHHH
Q 003913 416 EETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDR---LHLAFSECLEKCRP--NRTIYGIYLESLKNAGNIEKA 490 (787)
Q Consensus 416 g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~---a~~~~~~m~~~~~p--~~~~~~~li~~~~~~g~~~~A 490 (787)
..+..+.+-|.+....| .++..+-..+..++.+.....+ ++.++..+.+...| .....-.|.-++.+.|++++|
T Consensus 15 ~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 34455566666665555 3777787888888888776665 77778777764323 344555667788888999999
Q ss_pred HHHHHHhhhCC
Q 003913 491 EEIFNHMHSDQ 501 (787)
Q Consensus 491 ~~l~~~m~~~~ 501 (787)
.+.++.+.+..
T Consensus 94 ~~~~~~lL~~e 104 (126)
T 1nzn_A 94 LKYVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99998888853
No 232
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=90.67 E-value=1.6 Score=42.96 Aligned_cols=82 Identities=16% Similarity=0.203 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhc-CCH
Q 003913 418 TELTESLMKEFVETGMKPL---MPSYINLTNMYLNL-----GMHDRLHLAFSECLEKCR-PNRTIYGIYLESLKNA-GNI 487 (787)
Q Consensus 418 ~~~A~~l~~~m~~~g~~p~---~~t~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~-p~~~~~~~li~~~~~~-g~~ 487 (787)
...|...+++.++ +.|+ ...|..|...|.+. |+.++|.+.|++.++-.+ -+..++....+.|++. |+.
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 3455555555555 3454 45666777777763 777777777777766322 2366777777777774 777
Q ss_pred HHHHHHHHHhhhCC
Q 003913 488 EKAEEIFNHMHSDQ 501 (787)
Q Consensus 488 ~~A~~l~~~m~~~~ 501 (787)
++|.+.+++.....
T Consensus 257 ~~a~~~L~kAL~a~ 270 (301)
T 3u64_A 257 AGFDEALDRALAID 270 (301)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCC
Confidence 77777777777754
No 233
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.60 E-value=3.3 Score=46.93 Aligned_cols=53 Identities=17% Similarity=-0.027 Sum_probs=39.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 003913 446 MYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMH 498 (787)
Q Consensus 446 ~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 498 (787)
-|...|+++.|+++-++...-.+-+-.+|..|...|...|+++.|+-.++.++
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 35566777778777777766556667788888888888888888888877775
No 234
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.49 E-value=2.5 Score=44.15 Aligned_cols=78 Identities=10% Similarity=0.010 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-----cCCccCHHHHHH
Q 003913 473 IYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL-----KKYEIESAWMEK 547 (787)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~~~p~~~~~ 547 (787)
+...++..+...|++++|...+..+.... +-+...|..+|.+|.+.|+..+|++.|++..+ -|+.|.|.+...
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~--P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH--PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 34556777888899999998888888775 55788899999999999999999988888764 377777776444
Q ss_pred HHHHH
Q 003913 548 LDYVL 552 (787)
Q Consensus 548 l~~~~ 552 (787)
+..++
T Consensus 251 ~~~il 255 (388)
T 2ff4_A 251 NERIL 255 (388)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 235
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=88.38 E-value=22 Score=41.22 Aligned_cols=152 Identities=9% Similarity=0.017 Sum_probs=67.8
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHHcCChHHHHHHHHHHHHcCCCCCH-HHHH---HHHHHHHhc
Q 003913 342 CAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEA--YAKIGEFMKSLEIFREMQERLGSASV-PAYH---KIIELLCKA 415 (787)
Q Consensus 342 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~---~li~~~~~~ 415 (787)
++-.|+-+....++..+.+.. +..+...+.-+ +...|+.+.+..+.+.+... .|. .-|. ++.-+|+..
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGT 573 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGT 573 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTS
T ss_pred hcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCC
Confidence 334555555566655554432 22222223333 33456666666666665543 122 2222 222345555
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCH-HHHHHHH
Q 003913 416 EETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNI-EKAEEIF 494 (787)
Q Consensus 416 g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~-~~A~~l~ 494 (787)
|+.....+++..+.... ..++.....+.-++...|+.+.+.+++..+.+...|.+.--..+.-+....|.. .+|.+++
T Consensus 574 Gn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L 652 (963)
T 4ady_A 574 GNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVL 652 (963)
T ss_dssp CCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHH
T ss_pred CCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 56555555666665431 222222222233333445555555555544442333333333333333333332 4566666
Q ss_pred HHhhhC
Q 003913 495 NHMHSD 500 (787)
Q Consensus 495 ~~m~~~ 500 (787)
..+...
T Consensus 653 ~~L~~D 658 (963)
T 4ady_A 653 DPLTKD 658 (963)
T ss_dssp HHHHTC
T ss_pred HHHccC
Confidence 666543
No 236
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=88.03 E-value=3 Score=40.96 Aligned_cols=93 Identities=10% Similarity=0.028 Sum_probs=71.1
Q ss_pred hhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHc-----cCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCc-CCC
Q 003913 160 NETGFRVYEWMMQQHWYRFDFALATKLADYMGK-----ERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPV-QGC 233 (787)
Q Consensus 160 ~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~-----~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~-~g~ 233 (787)
...|...+++.++...--.+-..|+.|...|.+ -|+.++|.+.|++-.+.+..-+..++......++ + .|+
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~---~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALC---IPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTT---TTTTC
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHH---HhcCC
Confidence 467788888888865222246789999999999 4999999999999998643224777888888888 5 599
Q ss_pred HHHHHHHHHHHHHhCCCC--CCHHH
Q 003913 234 LDEACSIYNRMIQLGGYQ--PRPSL 256 (787)
Q Consensus 234 ~~~A~~l~~~m~~~~g~~--pd~~t 256 (787)
.++|.+.+++..+. ... |+...
T Consensus 256 ~~~a~~~L~kAL~a-~p~~~P~~~l 279 (301)
T 3u64_A 256 RAGFDEALDRALAI-DPESVPHNKL 279 (301)
T ss_dssp HHHHHHHHHHHHHC-CGGGCSSCHH
T ss_pred HHHHHHHHHHHHcC-CCCCCCChhH
Confidence 99999999999985 333 55443
No 237
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=87.32 E-value=13 Score=32.34 Aligned_cols=51 Identities=12% Similarity=0.152 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 003913 451 GMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ 501 (787)
Q Consensus 451 g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 501 (787)
+++++|.++|+.+++.++.=...|.....--.++|++..|.+++.+.+..+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 444455555555543111114455555555555566666666665555554
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=87.10 E-value=14 Score=32.14 Aligned_cols=69 Identities=13% Similarity=0.072 Sum_probs=44.5
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHH-HHHHHHHHHhhcc
Q 003913 484 AGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESA-WMEKLDYVLSLNR 556 (787)
Q Consensus 484 ~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~-~~~~l~~~~~l~~ 556 (787)
.++.++|.++|+.+++.+ -+ =...|.....--.+.|+...|.+++.+.+.. .+.|. .++....-+..+.
T Consensus 73 i~D~d~aR~vy~~a~~~h-Kk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~--~~k~~~~le~a~~nl~~~~ 142 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANC-KK-FAFVHISFAQFELSQGNVKKSKQLLQKAVER--GAVPLEMLEIALRNLNLQK 142 (161)
T ss_dssp HHCGGGCHHHHHHHHHHC-TT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCBCHHHHHHHHHHHHTTC
T ss_pred hcCHHHHHHHHHHHHHHh-HH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CCCcHHHHHHHHHhhhcCC
Confidence 367888888888886543 22 2677777777777888888888888888853 34443 2333333344443
No 239
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=84.23 E-value=4 Score=32.56 Aligned_cols=62 Identities=13% Similarity=0.054 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 003913 418 TELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLE 479 (787)
Q Consensus 418 ~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~ 479 (787)
.-+..+-++.+....+.|++.+..+.+++|-+.+++..|.++|+.+...+.+...+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 33555566666666777888888888888888888888888888777655555556666654
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=83.73 E-value=5 Score=45.46 Aligned_cols=55 Identities=18% Similarity=0.025 Sum_probs=47.8
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003913 478 LESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (787)
Q Consensus 478 i~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (787)
.+-+...|+++-|+++-++.... .|-+-.+|..|..+|.+.|+++.|+-.++.+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 34456689999999999999986 35568999999999999999999999999884
No 241
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.17 E-value=50 Score=34.85 Aligned_cols=169 Identities=9% Similarity=0.120 Sum_probs=78.4
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----HcCChHHHHH--HHHHHH---HcCCC
Q 003913 329 EEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYA----KIGEFMKSLE--IFREMQ---ERLGS 399 (787)
Q Consensus 329 ~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~--~~~~m~---~~g~~ 399 (787)
.-.......++..|.+.|+++...+.+..+.+..-. -......+|..+. .....+.... +.+... +..+.
T Consensus 53 ~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kif 131 (445)
T 4b4t_P 53 ASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIF 131 (445)
T ss_dssp TTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCC
T ss_pred hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchH
Confidence 334566777888888888888877776655544222 1222233333222 1222221111 111000 00000
Q ss_pred C---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh---cC-
Q 003913 400 A---SVPAYHKIIELLCKAEETELTESLMKEFVET--GMKPL---MPSYINLTNMYLNLGMHDRLHLAFSECLE---KC- 467 (787)
Q Consensus 400 p---~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~---~~t~~~li~~~~~~g~~~~a~~~~~~m~~---~~- 467 (787)
. .......|...+...|++.+|..++..+... |.... ...+...++.|...+++..|..++.++.. ..
T Consensus 132 lE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~ 211 (445)
T 4b4t_P 132 VEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNP 211 (445)
T ss_dssp CCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccC
Confidence 0 0112234555666666666666666665531 21111 23445555556666666666666555431 11
Q ss_pred -CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 003913 468 -RPN--RTIYGIYLESLKNAGNIEKAEEIFNHMH 498 (787)
Q Consensus 468 -~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~ 498 (787)
.|+ ...|..++..+...+++.+|...|.+..
T Consensus 212 ~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 212 KYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 111 1234455555555566665555555443
No 242
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=81.90 E-value=5.1 Score=41.72 Aligned_cols=69 Identities=4% Similarity=-0.023 Sum_probs=54.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-----CCCCCCCHHH
Q 003913 440 YINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHS-----DQTIGVNTRS 509 (787)
Q Consensus 440 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~~~~~p~~~t 509 (787)
...++.++...|++++|...+..+....+-+...|..||.+|.+.|+..+|++.|++..+ .| +.|...+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG-~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLG-IDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHS-CCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC-CCCCHHH
Confidence 445667777888888888888887776677888999999999999999999998887654 36 7777544
No 243
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=78.09 E-value=33 Score=30.29 Aligned_cols=29 Identities=14% Similarity=0.017 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 003913 472 TIYGIYLESLKNAGNIEKAEEIFNHMHSD 500 (787)
Q Consensus 472 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 500 (787)
..---+..+|.+.|++++|+.+++.+..+
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 33334556666777777777777766554
No 244
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=77.28 E-value=60 Score=32.20 Aligned_cols=66 Identities=8% Similarity=0.045 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHH----HHHHHHcCCCCCHHHHHHHH
Q 003913 334 VLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEI----FREMQERLGSASVPAYHKII 409 (787)
Q Consensus 334 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~li 409 (787)
+|.++..-|.+.+++++|.+++.. -...+.+.|+...|-++ .+-..+.+.+++......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~---------------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ---------------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH---------------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH---------------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 455555555555555555554322 12234445555554443 33334445566655555555
Q ss_pred HHHHh
Q 003913 410 ELLCK 414 (787)
Q Consensus 410 ~~~~~ 414 (787)
..+..
T Consensus 100 ~l~~~ 104 (312)
T 2wpv_A 100 RLIAE 104 (312)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 54443
No 245
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=76.49 E-value=9 Score=32.38 Aligned_cols=60 Identities=13% Similarity=0.076 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 003913 420 LTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLE 479 (787)
Q Consensus 420 ~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~ 479 (787)
+..+-++.+....+.|++.+..+.+++|-+.+++..|.++|+.+..++.+...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 445555566666778888888888888888888888888888877766666566766654
No 246
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=75.89 E-value=66 Score=31.93 Aligned_cols=26 Identities=4% Similarity=-0.238 Sum_probs=18.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHH
Q 003913 366 PTPAFVYKMEAYAKIGEFMKSLEIFR 391 (787)
Q Consensus 366 ~~~~~~~li~~~~~~g~~~~A~~~~~ 391 (787)
+......+...|.+.|++.+|...|-
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 56666777777777777777777664
No 247
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=73.56 E-value=9.6 Score=36.77 Aligned_cols=58 Identities=12% Similarity=0.130 Sum_probs=42.0
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHH
Q 003913 480 SLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESA 543 (787)
Q Consensus 480 ~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~ 543 (787)
.+.+.|.+++|++....-++.. |-|...-..|+.-+|-.|+|++|.+-++-..+ .+|+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~--P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~----l~p~ 63 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIK----LFPE 63 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----hCch
Confidence 4456777888887777777764 55677777777778888888888877777776 5554
No 248
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=72.58 E-value=82 Score=31.53 Aligned_cols=67 Identities=10% Similarity=-0.011 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHH----HHHHHcCCCCCHHHHHHHH
Q 003913 334 VLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIF----REMQERLGSASVPAYHKII 409 (787)
Q Consensus 334 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~li 409 (787)
+|.++..-|.+.+++++|.+++.. -...+.+.|+...|-++- +-..+.++++|..+...++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~---------------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS---------------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH---------------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH---------------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 445555555555555555554321 122344445554443333 3334455556655555555
Q ss_pred HHHHhc
Q 003913 410 ELLCKA 415 (787)
Q Consensus 410 ~~~~~~ 415 (787)
..+...
T Consensus 102 ~L~~~~ 107 (336)
T 3lpz_A 102 GCLRLF 107 (336)
T ss_dssp HHHTTS
T ss_pred HHHHhC
Confidence 554443
No 249
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=70.64 E-value=27 Score=30.93 Aligned_cols=116 Identities=9% Similarity=-0.031 Sum_probs=64.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHh---cCCCCHHH
Q 003913 405 YHKIIELLCKAEETELTESLMKEFVET-GMKPL-------MPSYINLTNMYLNLGMHDRLHLAFSECLE---KCRPNRTI 473 (787)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~-------~~t~~~li~~~~~~g~~~~a~~~~~~m~~---~~~p~~~~ 473 (787)
+-.-+..+...|.++.|.-+.+.+... +..|+ ..++..+.+++...+++..|...|++.++ ....+..+
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 334467777888888888777765541 12333 23567777788888888888888888654 22222222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 003913 474 YGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMC 534 (787)
Q Consensus 474 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~ 534 (787)
+.++- ....... ... ..++...-.-+..+|.+.|++++|+.+++.+.
T Consensus 103 ~~~~~----~~ss~p~---------s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 103 RPSTG----NSASTPQ---------SQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp ---------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred ccccc----ccCCCcc---------ccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 21110 0000000 001 12234444457889999999999999988654
No 250
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=70.13 E-value=38 Score=26.97 Aligned_cols=89 Identities=15% Similarity=0.087 Sum_probs=65.6
Q ss_pred hcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHH
Q 003913 156 RIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLD 235 (787)
Q Consensus 156 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~ 235 (787)
.....++|..+-+|+...+ . ...+--.-+..+...|++.+|..+.+.+. .||...|-+|-.+ |.|..+
T Consensus 19 G~H~HqEA~tIAdwL~~~~--~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~-----rlGl~s 86 (116)
T 2p58_C 19 GNHYHEEANCIAEWLHLKG--E-EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCEY-----RLGLGS 86 (116)
T ss_dssp TTTCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHH-----HHTCHH
T ss_pred cchHHHHHHHHHHHHHhCC--c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH-----hcccHH
Confidence 4556899999999999987 2 33333344456778999999998887665 6999999988666 458889
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHH
Q 003913 236 EACSIYNRMIQLGGYQPRPSLHN 258 (787)
Q Consensus 236 ~A~~l~~~m~~~~g~~pd~~t~~ 258 (787)
++..-+..+-.+ -.|....|.
T Consensus 87 ~le~rL~~la~s--g~p~~q~Fa 107 (116)
T 2p58_C 87 ALESRLNRLARS--QDPRIQTFV 107 (116)
T ss_dssp HHHHHHHHHTTC--CCHHHHHHH
T ss_pred HHHHHHHHHHhC--CCHHHHHHH
Confidence 988888788664 245544443
No 251
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=69.76 E-value=19 Score=30.55 Aligned_cols=65 Identities=9% Similarity=0.060 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhhhCCCCCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 468 RPNRTIYGIYLESLKNAGN---IEKAEEIFNHMHSDQTIGV--NTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 468 ~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~~~~~p--~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
.|+..+--.+..++++... ..+++.++++..+.+ | ....+--|.-|+.+.|++++|.++.+.+++
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~---~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA---ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC---GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC---cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4455554455555555543 345666666666544 2 234444555566777777777777777765
No 252
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=68.36 E-value=28 Score=42.02 Aligned_cols=143 Identities=10% Similarity=0.017 Sum_probs=72.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-----------------
Q 003913 373 KMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKP----------------- 435 (787)
Q Consensus 373 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p----------------- 435 (787)
++..+.+.+..+-|.++..-. +-+...--.+..+|...|++++|.+.|.+... |+..
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccccc
Confidence 444555556665555433221 12333333445566666777777666655321 1110
Q ss_pred ------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC
Q 003913 436 ------LMPSYINLTNMYLNLGMHDRLHLAFSECLE-KCRPNR----TIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIG 504 (787)
Q Consensus 436 ------~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-~~~p~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 504 (787)
-..=|..++..+.+.+.++.+.++-...++ ..+.+. ..|..+.+.+...|++++|...+-.+.... .
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~-~- 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP-L- 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS-S-
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH-H-
Confidence 112245555566666666666655555544 111111 145666666666666666666666665543 2
Q ss_pred CCHHHHHHHHHHHHcCCCHH
Q 003913 505 VNTRSCNIILSAYLSSGDFV 524 (787)
Q Consensus 505 p~~~t~~~li~~~~~~g~~~ 524 (787)
-......|+..+|..|..+
T Consensus 970 -r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 970 -KKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp -CHHHHHHHHHHHHHHCCHH
T ss_pred -HHHHHHHHHHHHHhCCChh
Confidence 3345555555555555543
No 253
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=68.13 E-value=45 Score=26.69 Aligned_cols=73 Identities=14% Similarity=0.147 Sum_probs=54.6
Q ss_pred HHHHHccC-ChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003913 187 ADYMGKER-KFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRAL 264 (787)
Q Consensus 187 i~~~~~~g-~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~ 264 (787)
...+.+.. +.-++++-++.+....+.|+.....+.+.+|- |-+++.-|+.+|+-.+.+ +.+...+|..++.-+
T Consensus 16 ~~~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcR---RvND~alAVR~lE~iK~K--~~~~~~iY~~~lqEl 89 (109)
T 1v54_E 16 VTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACR---RLNDFASAVRILEVVKDK--AGPHKEIYPYVIQEL 89 (109)
T ss_dssp HHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHHHH
T ss_pred HHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHH---HhhhHHHHHHHHHHHHHH--hcCchhhHHHHHHHH
Confidence 33443444 55577778888888888999999999999998 789999999999998875 444455677666543
No 254
>2vs7_A I-DMOI, homing endonuclease I-DMOI; protein/nucleic acid crystallography; 2.05A {Desulfurococcus mobilis} PDB: 2vs8_A 1b24_A
Probab=65.67 E-value=14 Score=34.04 Aligned_cols=54 Identities=9% Similarity=0.046 Sum_probs=40.8
Q ss_pred cEEEEccCCHHHHHHHHHHHhhCCCceEEEe---cCcEEEEEEeCCchHHHHHhcccc
Q 003913 690 DILLKLKVSSEGIALVFKTLKARSLDCRVKK---KGRVFWIGFLGSNSTLFWKLIEPY 744 (787)
Q Consensus 690 ~~~~~~~g~~~e~~~l~~~l~~~gl~~~~~~---~~~~~~i~~~~~~~~~~~~lv~~~ 744 (787)
.+.+++ .+.+=+..+...|..-||.+++.. .+.+|+|.|...+..+|.+.|-+-
T Consensus 124 ~i~l~s-~s~~ll~~v~~lL~~lGI~s~i~~~~~~~~~y~L~Is~~~~~~F~~~IGf~ 180 (199)
T 2vs7_A 124 RLRIWN-KNKALLEIVSRWLNNLGVRNTIHLDDHRHGVYVLNISLRDRIKFVHTILSS 180 (199)
T ss_dssp SEEEEE-SCHHHHHHHHHHHHHTTCCEEEEEEETTTTEEEEEECGGGHHHHHHHTTTC
T ss_pred EEEEEE-CcHHHHHHHHHHHHHCCCeEEEEEecCCCCeEEEEECchHHHHHHHHcCCC
Confidence 444444 566666667777777799999964 455899999999999999998653
No 255
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=65.33 E-value=36 Score=27.03 Aligned_cols=89 Identities=10% Similarity=0.017 Sum_probs=65.9
Q ss_pred hcCChhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHH
Q 003913 156 RIRENETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLD 235 (787)
Q Consensus 156 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~ 235 (787)
.....++|..+-+|+...+ . ...+--.-+..+...|++.+|..+.+.+. .||...|-+|-.+ |.|..+
T Consensus 18 G~H~HqEA~tIAdwL~~~~--~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~-----rlGl~s 85 (115)
T 2uwj_G 18 GQHCHEEALCIAEWLERLG--Q-DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCEW-----HLGLGA 85 (115)
T ss_dssp TTTCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHHH-----HTTCHH
T ss_pred cchHHHHHHHHHHHHHhCC--c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH-----hcccHH
Confidence 4556899999999999987 2 33333344456778999999998877664 6999999888665 569999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHH
Q 003913 236 EACSIYNRMIQLGGYQPRPSLHN 258 (787)
Q Consensus 236 ~A~~l~~~m~~~~g~~pd~~t~~ 258 (787)
++..-+..+-.+ -.|....|.
T Consensus 86 ~le~rL~~la~s--g~p~~q~Fa 106 (115)
T 2uwj_G 86 ALDRRLAGLGGS--SDPALADFA 106 (115)
T ss_dssp HHHHHHHHHHTC--SSHHHHHHH
T ss_pred HHHHHHHHHHhC--CCHHHHHHH
Confidence 999888888765 255554443
No 256
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=65.28 E-value=66 Score=27.95 Aligned_cols=54 Identities=11% Similarity=0.172 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCCC
Q 003913 160 NETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRVP 213 (787)
Q Consensus 160 ~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~p 213 (787)
.+.+..+|..|..+|.-.--...|......+...|++.+|.+||+.=.+++-.|
T Consensus 81 ~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 81 NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 344666666666666333345556666666666666666666666666654444
No 257
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=65.03 E-value=0.0029 Score=66.00 Aligned_cols=200 Identities=10% Similarity=0.036 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003913 369 AFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYL 448 (787)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~ 448 (787)
+|..|..++.+.|++.+|++-|-+.. |...|..+|.+..+.|.+++-...+...++..-. ...=+.|+-+|+
T Consensus 56 VWs~LgkAqL~~~~v~eAIdsyIkA~------Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke--~~IDteLi~ayA 127 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKEAIDSYIKAD------DPSSYMEVVQAANTSGNWEELVKYLQMARKKARE--SYVETELIFALA 127 (624)
T ss_dssp CSSSHHHHTTTSSSCTTTTTSSCCCS------CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCS--TTTTHHHHHHHH
T ss_pred HHHHHHHHHHccCchHHHHHHHHhCC------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcc--cccHHHHHHHHH
Confidence 44444455544555544444332111 3334444455555555555444444444332111 222234445555
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-------------------CCCCHHH
Q 003913 449 NLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQT-------------------IGVNTRS 509 (787)
Q Consensus 449 ~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~-------------------~~p~~~t 509 (787)
+.+++.+.++++ ..||..-...+.+-|...|.++.|.-+|..+..-.. -..+..|
T Consensus 128 k~~rL~elEefl------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 128 KTNRLAELEEFI------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp TSCSSSTTTSTT------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hhCcHHHHHHHH------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 554433322211 123333334444444444444444444433221110 1236678
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHHHHHHHHhhcccccccccccCCchHHHHHHHHHHhhhhhhccch
Q 003913 510 CNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESAWMEKLDYVLSLNRKEVKKPVSLNLSSEQRENLIGLLLGGLCIESDE 589 (787)
Q Consensus 510 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~~~~~l~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ll~~~~~~~~~ 589 (787)
|.-+-.+|...+.+.-|.-.--.++ +.|+. ...|+.-|...|.+
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniI-----vhade-------------------------------L~elv~~YE~~G~f 245 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIV-----VHADE-------------------------------LEELINYYQDRGYF 245 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHH-----CCSSC-------------------------------CSGGGSSSSTTCCC
T ss_pred HHHHHHHHhCchHHHHHHHhcchhc-----ccHHH-------------------------------HHHHHHHHHhCCCH
Confidence 8888888888887666554433333 22221 12355566677777
Q ss_pred hhcceeEE--EEEccCCcccHHHHHHHHHHc
Q 003913 590 KRKRHMIR--FQFNENSRMHSVLRRYLYDQY 618 (787)
Q Consensus 590 ~~a~~~~~--~~~~p~~~~~~~~l~~~y~~~ 618 (787)
++-..+++ ++++..+...+.-|+-+|++.
T Consensus 246 ~ELIsLlEaglglErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 246 EELITMLEAALGLERAHMGMFTELAILYSKF 276 (624)
T ss_dssp TTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHHHhc
Confidence 77666666 555555666777788888875
No 258
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=61.51 E-value=74 Score=26.90 Aligned_cols=68 Identities=7% Similarity=-0.004 Sum_probs=48.4
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 003913 434 KPLMPSYINLTNMYLNLGMH---DRLHLAFSECLEKCR-PNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQ 501 (787)
Q Consensus 434 ~p~~~t~~~li~~~~~~g~~---~~a~~~~~~m~~~~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 501 (787)
.|+..|-..+..++.+.... .+++.+++.+.+..+ -....+--|.-++.+.|++++|.+..+.+.+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 56777777777777777654 457777777776322 235666677788888888888888888888753
No 259
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=59.59 E-value=1.3e+02 Score=36.23 Aligned_cols=146 Identities=12% Similarity=-0.006 Sum_probs=99.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC----------------
Q 003913 337 SVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSA---------------- 400 (787)
Q Consensus 337 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---------------- 400 (787)
.++..+.+.+..+.+.++..... .+...--.+..+|..+|++++|.+.|.+... |+..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccc
Confidence 45556667777777766554322 2333334567888999999999999976421 1100
Q ss_pred -------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 003913 401 -------SVPAYHKIIELLCKAEETELTESLMKEFVETGMKPL----MPSYINLTNMYLNLGMHDRLHLAFSECLEKCRP 469 (787)
Q Consensus 401 -------~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p 469 (787)
-..=|..++..+-+.+.++.+.++-...++..-.-+ ...|..+.+++...|++++|...+-.+... .-
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-~~ 969 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT-PL 969 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-SS
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-HH
Confidence 112367788889999999999988887776432222 125788999999999999998888777641 22
Q ss_pred CHHHHHHHHHHHHhcCCHHH
Q 003913 470 NRTIYGIYLESLKNAGNIEK 489 (787)
Q Consensus 470 ~~~~~~~li~~~~~~g~~~~ 489 (787)
-......||..+|..|..+.
T Consensus 970 r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHhCCChhh
Confidence 35667778887887776544
No 260
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=58.99 E-value=77 Score=26.85 Aligned_cols=73 Identities=14% Similarity=0.147 Sum_probs=56.0
Q ss_pred HHHHHccC-ChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003913 187 ADYMGKER-KFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRAL 264 (787)
Q Consensus 187 i~~~~~~g-~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~ 264 (787)
...+.+.. +.-+.++-++.+....+.|+.....+.+.+|- |-+++.-|+.+|+-.+.+ +.+....|..++.-+
T Consensus 59 ~~~F~~~~iD~wElrrglN~l~~~DlVPeP~Ii~AALrAcR---RvNDfalAVR~lE~vK~K--~~~~~~iY~y~lqEl 132 (152)
T 2y69_E 59 VTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACR---RLNDFASAVRILEVVKDK--AGPHKEIYPYVIQEL 132 (152)
T ss_dssp HHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHHHH
T ss_pred HHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHH---HhhhHHHHHHHHHHHHHh--cCCchhhHHHHHHHH
Confidence 33343444 55567777888888889999999999999998 899999999999999875 455555677666543
No 261
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=58.82 E-value=1.8e+02 Score=30.49 Aligned_cols=187 Identities=10% Similarity=0.045 Sum_probs=119.6
Q ss_pred CChHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHH----hc
Q 003913 346 GDVEDAEKTWLRLLES-----DNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQER-LGSASVPAYHKIIELLC----KA 415 (787)
Q Consensus 346 g~~~~A~~~~~~m~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~li~~~~----~~ 415 (787)
|++++|.+.+-.+.+. +..........++..|.+.|+++...+.+.-+..+ |..+ .....++..+. ..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk--~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK--LSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH--HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhcC
Confidence 5566666666555432 23345667778899999999999988888776543 3222 22334444332 23
Q ss_pred CChHHH--HHHHHHHHH--cC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---cCCCC---HHHHHHHHHHH
Q 003913 416 EETELT--ESLMKEFVE--TG-MKP---LMPSYINLTNMYLNLGMHDRLHLAFSECLE---KCRPN---RTIYGIYLESL 481 (787)
Q Consensus 416 g~~~~A--~~l~~~m~~--~g-~~p---~~~t~~~li~~~~~~g~~~~a~~~~~~m~~---~~~p~---~~~~~~li~~~ 481 (787)
...+.. ..+...... .| +-. .......|...|...|++.+|..++..+.. +.... +..|..-+..|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 332221 111111111 11 111 123446788899999999999999999875 22211 45677788999
Q ss_pred HhcCCHHHHHHHHHHhhh----CCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 482 KNAGNIEKAEEIFNHMHS----DQTIGVN--TRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 482 ~~~g~~~~A~~l~~~m~~----~~~~~p~--~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
...+++..|..+++++.. .. .+|+ ..-|..++..+...+++.+|.+.|.+..+
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~-~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNP-KYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccC-CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 999999999999998742 22 1232 24567777888899999999999988875
No 262
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=58.69 E-value=68 Score=25.55 Aligned_cols=50 Identities=16% Similarity=0.032 Sum_probs=22.9
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 003913 480 SLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLK 536 (787)
Q Consensus 480 ~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 536 (787)
.+...|++++|..+.+.+. .||...|-+|-. .+.|..+++...+.++-.+
T Consensus 49 SLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce--~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLA-----YPDLEPWLALCE--YRLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSC-----CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTC
T ss_pred HHHcchhHHHHHHhcCCCC-----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 3444555555555444432 245555544432 2444444444444444443
No 263
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=58.16 E-value=76 Score=33.24 Aligned_cols=27 Identities=11% Similarity=0.213 Sum_probs=17.7
Q ss_pred CHHHHHHHHHHHhhC-CCceEEEecCcE
Q 003913 698 SSEGIALVFKTLKAR-SLDCRVKKKGRV 724 (787)
Q Consensus 698 ~~~e~~~l~~~l~~~-gl~~~~~~~~~~ 724 (787)
+.++++..+..|-.. .|.++|.+..+.
T Consensus 360 s~~~~E~~L~~lI~~g~l~akID~~~gi 387 (429)
T 4b4t_R 360 SVAFLDNDLGKFIPNKQLNCVIDRVNGI 387 (429)
T ss_dssp CHHHHHHHHHHHHHHTSSCEEEETTTTE
T ss_pred CHHHHHHHHHHHHHcCCeEEEEcCCCCE
Confidence 667777666666644 777777666554
No 264
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=55.95 E-value=1.9e+02 Score=29.78 Aligned_cols=27 Identities=4% Similarity=0.010 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHHhhC-CCceEEEecCcE
Q 003913 698 SSEGIALVFKTLKAR-SLDCRVKKKGRV 724 (787)
Q Consensus 698 ~~~e~~~l~~~l~~~-gl~~~~~~~~~~ 724 (787)
+.++++.++-.|-.. -|.++|.+..+.
T Consensus 329 s~~evE~~L~~lI~dg~I~a~IDq~~gi 356 (394)
T 3txn_A 329 PMPQVEKKLSQMILDKKFSGILDQGEGV 356 (394)
T ss_dssp CHHHHHHHHHHHHHTTSSCEEEETTTTE
T ss_pred CHHHHHHHHHHHHHCCCeeEEEcCCCCE
Confidence 678888888888765 888888777665
No 265
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=55.06 E-value=67 Score=25.55 Aligned_cols=52 Identities=12% Similarity=-0.053 Sum_probs=26.5
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 003913 479 ESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKK 537 (787)
Q Consensus 479 ~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g 537 (787)
..+...|++++|..+.+.+. .||...|-+|-. .+.|..+++...+.++-.+|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGNP-----WPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTCC-----CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 34455555555555544433 355555555432 25555555555555555443
No 266
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=53.96 E-value=2.6e+02 Score=30.79 Aligned_cols=122 Identities=6% Similarity=0.030 Sum_probs=77.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Q 003913 409 IELLCKAEETELTESLMKEFVETGMKPLMPSYI----NLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNA 484 (787)
Q Consensus 409 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~----~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~ 484 (787)
+.-+.+. +.+.|..++....+.. ..+..... .+.......+...++...+...... ..+.....-.+..-.+.
T Consensus 222 ~~rlar~-d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~r~Alr~ 298 (618)
T 1qsa_A 222 FASVARQ-DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR-SQSTSLIERRVRMALGT 298 (618)
T ss_dssp HHHHHHH-CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT-CCCHHHHHHHHHHHHHH
T ss_pred HHHHHhc-CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc-CCChHHHHHHHHHHHHC
Confidence 3334443 7789999998887644 23333322 2333333344345566666664432 23333344444455578
Q ss_pred CCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 485 GNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 485 g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
|+++.|...|+.|.... .....-..-+..++...|+.++|..+|+.+.+
T Consensus 299 ~d~~~a~~~~~~l~~~~--~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 299 GDRRGLNTWLARLPMEA--KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp TCHHHHHHHHHHSCTTG--GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHccccc--cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999999999998753 22445555667788899999999999999974
No 267
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=53.94 E-value=40 Score=32.51 Aligned_cols=54 Identities=7% Similarity=0.023 Sum_probs=30.5
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003913 411 LLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLE 465 (787)
Q Consensus 411 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 465 (787)
.+.+.|.+++|++....-++.. +-|...-..|+..+|-.|+++.|.+-++...+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3445566666666555555543 44555555666666666666666655555544
No 268
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=53.11 E-value=1.1e+02 Score=31.94 Aligned_cols=95 Identities=14% Similarity=0.107 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHH---cCCCCCHH----H
Q 003913 369 AFVYKMEAYAKIGEFMKSLEIFREMQERLGSAS--VPAYHKIIELLCKAEETELTESLMKEFVE---TGMKPLMP----S 439 (787)
Q Consensus 369 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~A~~l~~~m~~---~g~~p~~~----t 439 (787)
+...+...|.+.|++++|.+.|.++...-..+. ...+-.+|..+...+++..+...+.+... .+-.|+.. .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 445567777777777777777777765422222 34556666777777777777777776654 22222221 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003913 440 YINLTNMYLNLGMHDRLHLAFSECLE 465 (787)
Q Consensus 440 ~~~li~~~~~~g~~~~a~~~~~~m~~ 465 (787)
|..+ .+...+++..|...|-++..
T Consensus 213 ~~gl--~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGI--HCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHH--GGGGTSCHHHHHHHHHHHHH
T ss_pred HHHH--HHHHhChHHHHHHHHHHHhc
Confidence 2222 23345777777777777655
No 269
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=53.09 E-value=76 Score=29.03 Aligned_cols=52 Identities=12% Similarity=0.062 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC
Q 003913 487 IEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKY 538 (787)
Q Consensus 487 ~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 538 (787)
..++.++|..|..+|.-.--..-|......+...|++.+|.++|+.-++.+-
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A 146 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNC 146 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 4455555555554441112233444444444555555555555555554443
No 270
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=52.04 E-value=3.3e+02 Score=31.55 Aligned_cols=255 Identities=10% Similarity=0.023 Sum_probs=139.0
Q ss_pred hhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCC--C-----CCHHHHHHHHHHHHhcC
Q 003913 274 YYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGF--E-----EGKEVLLSVLRVCAKEG 346 (787)
Q Consensus 274 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~--~-----p~~~t~~~li~~~~~~g 346 (787)
|+.+++..++...+..+-..+..+-..-+.+.+....|...++..++.......- . +....-.++--+++-.|
T Consensus 388 g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~G 467 (963)
T 4ady_A 388 GNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMG 467 (963)
T ss_dssp SCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTT
T ss_pred CchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcC
Confidence 3555555555444332112244555555545555555555567777766554311 0 11111222222222233
Q ss_pred Ch-HHHHHHHHHHHhCCCCCCHHH--HH--HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 003913 347 DV-EDAEKTWLRLLESDNGIPTPA--FV--YKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEETELT 421 (787)
Q Consensus 347 ~~-~~A~~~~~~m~~~~~~~~~~~--~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 421 (787)
.- +++...+..+.... +..+ .. +|...|+-.|+-+....++..+.+.. .-++.-..++.-|+...|+.+.+
T Consensus 468 S~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~ 543 (963)
T 4ady_A 468 SANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELA 543 (963)
T ss_dssp CCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGG
T ss_pred CCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHH
Confidence 22 35555555555533 2211 12 23333445577777777777766541 11222233333445577899999
Q ss_pred HHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 003913 422 ESLMKEFVETGMKPLMPSY--INLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHS 499 (787)
Q Consensus 422 ~~l~~~m~~~g~~p~~~t~--~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 499 (787)
..+.+.+.... .|...-- .++.-+|+..|+.....+++..+.+....++.....+.-++...|+.+.+..+++.+.+
T Consensus 544 ~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~ 622 (963)
T 4ady_A 544 DDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK 622 (963)
T ss_dssp HHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG
T ss_pred HHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh
Confidence 98988887632 2222221 23455677888988888899888864333444344444455557777778888887776
Q ss_pred CCCCCCCHHHHHHHHHHHHcCCCH-HHHHHHHHHHHH
Q 003913 500 DQTIGVNTRSCNIILSAYLSSGDF-VKAEKIYDLMCL 535 (787)
Q Consensus 500 ~~~~~p~~~t~~~li~~~~~~g~~-~~A~~~~~~m~~ 535 (787)
.+ .|.+.--.++.-|....|.. .+|+..+..+..
T Consensus 623 ~~--d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 623 SH--NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp CS--CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred cC--CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 65 45555555555566656554 678889999874
No 271
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=49.11 E-value=1.3e+02 Score=25.84 Aligned_cols=65 Identities=9% Similarity=0.062 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHhhhCCCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 003913 469 PNRTIYGIYLESLKNAGN---IEKAEEIFNHMHSDQTIGVNT-RSCNIILSAYLSSGDFVKAEKIYDLMCL 535 (787)
Q Consensus 469 p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~~~~~p~~-~t~~~li~~~~~~g~~~~A~~~~~~m~~ 535 (787)
|+..+--.+..++++..+ ..+++.+++++...+ +.+. ....-|.-|+.+.|++++|.++.+.+++
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~--~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC--CSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--ccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 444444444445555442 334555555555543 1122 2233334466666666666666666665
No 272
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=45.89 E-value=1.4e+02 Score=25.52 Aligned_cols=68 Identities=12% Similarity=0.067 Sum_probs=37.9
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 003913 329 EEGKEVLLSVLRVCAKEGD---VEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQER 396 (787)
Q Consensus 329 ~p~~~t~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 396 (787)
.|+..+--....++.+... ..++..+++++.+.+..-.....-.|.-++.+.|++++|.+..+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4455554444445555443 3356666666666543222333334566777777777777777776664
No 273
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=45.30 E-value=50 Score=29.14 Aligned_cols=48 Identities=19% Similarity=0.191 Sum_probs=22.4
Q ss_pred HHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCC
Q 003913 163 GFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQG 210 (787)
Q Consensus 163 A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g 210 (787)
+..+|..|..+|.-.--...|......+...|++.+|.+||+.=.+.+
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 444555555544222233444444444455555555555555444443
No 274
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=43.83 E-value=14 Score=35.89 Aligned_cols=18 Identities=6% Similarity=0.023 Sum_probs=8.3
Q ss_pred HHHHHHccCChhHHHHHH
Q 003913 186 LADYMGKERKFAKCRDIF 203 (787)
Q Consensus 186 li~~~~~~g~~~~A~~~f 203 (787)
.+...++.|+++....++
T Consensus 8 ~L~~A~~~g~~~~v~~Ll 25 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLL 25 (285)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 344445556554443333
No 275
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=41.65 E-value=1.1e+02 Score=27.88 Aligned_cols=53 Identities=4% Similarity=0.019 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHCCCC
Q 003913 160 NETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQGRV 212 (787)
Q Consensus 160 ~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~g~~ 212 (787)
...+..+|..|..+|.-.--...|......+...|++.+|.++|+.=.+++-.
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~ 147 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCR 147 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 44555666666555522333445555555555566666666666555555433
No 276
>2dch_X Putative homing endonuclease; alpha/beta fold, hydrolase; 2.06A {Thermoproteus}
Probab=41.61 E-value=12 Score=35.03 Aligned_cols=58 Identities=12% Similarity=-0.026 Sum_probs=43.4
Q ss_pred CCHHHHHHHHHHHhhCCCceEEEecCcEEEEEEeCCchHHHHHhccccccccccccccCCC
Q 003913 697 VSSEGIALVFKTLKARSLDCRVKKKGRVFWIGFLGSNSTLFWKLIEPYVLDELKEDLLNEG 757 (787)
Q Consensus 697 g~~~e~~~l~~~l~~~gl~~~~~~~~~~~~i~~~~~~~~~~~~lv~~~~~~~m~~k~~~~~ 757 (787)
.+.+-+..|.+.|...||++++...++.|++||...+..++.+++ .-|+..-|+-+.+
T Consensus 151 ~s~e~a~~l~~lL~~fGI~aki~~rk~~y~VyIk~~e~~~l~~~l---~~~~~~~~~~~~~ 208 (216)
T 2dch_X 151 KSKELRDWIAQTLNDLGIRASRADKSDGYEVHIDGVEAWRLVPHL---QNPTHLERAQSVK 208 (216)
T ss_dssp SCHHHHHHHHHHHHHHTCCCEEEEETTEEEEEEETHHHHTTGGGC---CCHHHHHHHHHGG
T ss_pred CCHHHHHHHHHHHHHCCCceEEEeccCcEEEEEeChHHHHHHHHH---cCCchHHHHHHHH
Confidence 477888888888988899999988888999999977765554443 4566655555444
No 277
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=40.33 E-value=1.3e+02 Score=25.11 Aligned_cols=63 Identities=14% Similarity=0.213 Sum_probs=37.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHcCC
Q 003913 474 YGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGD--FVKAEKIYDLMCLKKY 538 (787)
Q Consensus 474 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~--~~~A~~~~~~m~~~g~ 538 (787)
.+.++.-|...|+.++|...++++.... + -...+..++..++-+.+. .+.+..++..+...|+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~-f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~ 74 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPH-F-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 74 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG-G-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCc-c-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 3456666777777777777777764321 1 123455556666666542 3556667777766555
No 278
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=40.17 E-value=79 Score=29.45 Aligned_cols=49 Identities=10% Similarity=0.261 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccCChhHHHHHHHHHHHC
Q 003913 161 ETGFRVYEWMMQQHWYRFDFALATKLADYMGKERKFAKCRDIFDDIINQ 209 (787)
Q Consensus 161 ~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~ 209 (787)
+.+..+|..|..+|.-.--...|......+...|++.+|.+||+.=.++
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM 179 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 3444555555554422223344444445555555555555555544444
No 279
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=38.28 E-value=46 Score=24.99 Aligned_cols=35 Identities=11% Similarity=0.085 Sum_probs=30.9
Q ss_pred CCHHHHHHHHHHHhhCCCceEEEecCcEEEEEEeC
Q 003913 697 VSSEGIALVFKTLKARSLDCRVKKKGRVFWIGFLG 731 (787)
Q Consensus 697 g~~~e~~~l~~~l~~~gl~~~~~~~~~~~~i~~~~ 731 (787)
.+.+.|..+...|..+|+.+.|...+..||+.+..
T Consensus 18 ~~~~~A~~~~~~L~~~g~~~~i~~~~~~yRV~vGp 52 (79)
T 1x60_A 18 KVKANADSLASNAEAKGFDSIVLLKDGLYKVQIGA 52 (79)
T ss_dssp SCHHHHHHHHHHHHHHTCCEEEEEETTEEEEEEEE
T ss_pred CCHHHHHHHHHHHHhCCCCeEEecCCcEEEEEECC
Confidence 38999999999999899999998888889988754
No 280
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=35.73 E-value=14 Score=35.87 Aligned_cols=21 Identities=24% Similarity=0.221 Sum_probs=10.9
Q ss_pred HHHHHHHHhcCCcCCCHHHHHHHHH
Q 003913 218 FHILIVAYLSAPVQGCLDEACSIYN 242 (787)
Q Consensus 218 y~~li~~~~~~~~~g~~~~A~~l~~ 242 (787)
.+.|..+. +.|+.+.+..+++
T Consensus 6 ~~~L~~A~----~~g~~~~v~~Ll~ 26 (285)
T 1wdy_A 6 NHLLIKAV----QNEDVDLVQQLLE 26 (285)
T ss_dssp HHHHHHHH----HTTCHHHHHHHHH
T ss_pred chHHHHHH----HcCCHHHHHHHHH
Confidence 34444444 4677765544443
No 281
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=35.60 E-value=2.5e+02 Score=25.26 Aligned_cols=154 Identities=11% Similarity=0.055 Sum_probs=69.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003913 330 EGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKII 409 (787)
Q Consensus 330 p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 409 (787)
+|..+-...+.++.+.|..+.... +..+... ++..+-...+.++++.|.. ++...+.++.. .+|...-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~-L~~~l~~---~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEP-LIKALKD---EDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHH-HHHHTTC---SCHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHH-HHHHHcC---CCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHH
Confidence 455555555555555555332222 2233332 2444444555566665543 23333333332 24555555555
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHH
Q 003913 410 ELLCKAEETELTESLMKEFVETGMKPLMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEK 489 (787)
Q Consensus 410 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~ 489 (787)
.++.+.+..+ +...+..+.+ .++..+-...+.++.+.+..+ +...+..+.+ .++..+-...+.++.+.|. .+
T Consensus 103 ~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~--d~~~~vr~~a~~aL~~~~~-~~ 174 (211)
T 3ltm_A 103 VALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK--DEDGWVRQSAADALGEIGG-ER 174 (211)
T ss_dssp HHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT--CSSHHHHHHHHHHHHHHCS-HH
T ss_pred HHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc--CCCHHHHHHHHHHHHHhCc-hh
Confidence 6666655533 2233333332 345555555555555555432 2222333322 3445555555555555554 34
Q ss_pred HHHHHHHhhh
Q 003913 490 AEEIFNHMHS 499 (787)
Q Consensus 490 A~~l~~~m~~ 499 (787)
+...+..+.+
T Consensus 175 ~~~~L~~~l~ 184 (211)
T 3ltm_A 175 VRAAMEKLAE 184 (211)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4444444444
No 282
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=35.32 E-value=41 Score=25.47 Aligned_cols=45 Identities=11% Similarity=0.055 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHHhhCCCceEEEecCcEEEEEEeC----CchHHHHHhcc
Q 003913 698 SSEGIALVFKTLKARSLDCRVKKKGRVFWIGFLG----SNSTLFWKLIE 742 (787)
Q Consensus 698 ~~~e~~~l~~~l~~~gl~~~~~~~~~~~~i~~~~----~~~~~~~~lv~ 742 (787)
+.+.|..+...|...|+.+.|...+..||+.+.. ........-++
T Consensus 19 ~~~~A~~l~~~L~~~G~~a~i~~~~~~yRV~vGpf~s~~~A~~~~~~L~ 67 (81)
T 1uta_A 19 GAEQAETVRAQLAFEGFDSKITTNNGWNRVVIGPVKGKENADSTLNRLK 67 (81)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEEECSSSEEEEESSCBTTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCeEEEeCCcEEEEEECCcCCHHHHHHHHHHHH
Confidence 7899999999999999999999878889998843 33444444443
No 283
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=34.11 E-value=0.18 Score=52.99 Aligned_cols=206 Identities=12% Similarity=0.062 Sum_probs=111.2
Q ss_pred hhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChH
Q 003913 305 HSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFM 384 (787)
Q Consensus 305 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 384 (787)
....+.|.+++-...+...++..- +..+=+.|+-+|++.+++.+-++++. .|++.-...+.+-|...|.++
T Consensus 91 ~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYe 161 (624)
T 3lvg_A 91 QAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYD 161 (624)
T ss_dssp HHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCST
T ss_pred HHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHH
Confidence 444444444444444433332211 22222345555555555544333221 133333344555555555555
Q ss_pred HHHHHHHHHHHcCC--------------------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003913 385 KSLEIFREMQERLG--------------------SASVPAYHKIIELLCKAEETELTESLMKEFVETGMKPLMPSYINLT 444 (787)
Q Consensus 385 ~A~~~~~~m~~~g~--------------------~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li 444 (787)
.|.-+|..+..-.- .-++.||--+-.+|...+++..|.-.--.++- .|| -...|+
T Consensus 162 AAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv 236 (624)
T 3lvg_A 162 AAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELI 236 (624)
T ss_dssp TSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGG
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHH
Confidence 55555554432110 12445666666677776666655443333331 221 123456
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHH
Q 003913 445 NMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFV 524 (787)
Q Consensus 445 ~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~ 524 (787)
.-|...|.+++-+.+++.-+..-......|+-|.-.|++- +.++-.+-++.--.+=.+ -.+|++|.+...|.
T Consensus 237 ~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNi-------pKviracE~ahLW~ 308 (624)
T 3lvg_A 237 NYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNI-------PKVLRAAEQAHLWA 308 (624)
T ss_dssp SSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCC-------TTTHHHHTTTTCHH
T ss_pred HHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccH-------HHHHHHHHHHhhHH
Confidence 6677778888888888777654567788888888888875 344444444433222102 24688999999999
Q ss_pred HHHHHHHH
Q 003913 525 KAEKIYDL 532 (787)
Q Consensus 525 ~A~~~~~~ 532 (787)
++.-++..
T Consensus 309 ElvfLY~~ 316 (624)
T 3lvg_A 309 ELVFLYDK 316 (624)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 98877764
No 284
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=33.70 E-value=44 Score=31.16 Aligned_cols=25 Identities=8% Similarity=0.203 Sum_probs=13.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCC
Q 003913 339 LRVCAKEGDVEDAEKTWLRLLESDN 363 (787)
Q Consensus 339 i~~~~~~g~~~~A~~~~~~m~~~~~ 363 (787)
+...++.|+.+.+..+++.+.+.+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~ 37 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGR 37 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 3444555666666666655555443
No 285
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=33.35 E-value=1.1e+02 Score=25.71 Aligned_cols=63 Identities=14% Similarity=0.191 Sum_probs=30.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCC
Q 003913 371 VYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEE--TELTESLMKEFVETGMK 434 (787)
Q Consensus 371 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~ 434 (787)
+.++.-|...|+.++|.+.++++...... ......++..++-+.+. .+.+..++..+.+.|+-
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 34566666666666666666665421111 12233344444444321 23445555555555543
No 286
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=33.31 E-value=2.9e+02 Score=25.42 Aligned_cols=34 Identities=21% Similarity=0.147 Sum_probs=16.1
Q ss_pred HHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCCccC
Q 003913 257 HNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGLEIQ 294 (787)
Q Consensus 257 ~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 294 (787)
|..+..++..... +++.+-..+++.++..++...
T Consensus 20 f~~~c~aFR~~r~----~dFrq~rdi~eall~~~l~~~ 53 (235)
T 3bu8_A 20 FHEALRAFRGSRY----GDFRQIRDIMQALLVRPLGKE 53 (235)
T ss_dssp HHHHHHHHHTTCH----HHHHHHHHHHHHHTTSCCCCC
T ss_pred HHHHHHHHHcccH----HHHHHHHHHHHHHHhCccccc
Confidence 4444455544321 345555555555554555444
No 287
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=32.67 E-value=22 Score=33.41 Aligned_cols=28 Identities=7% Similarity=0.050 Sum_probs=15.9
Q ss_pred HHHHHccCChhHHHHHHHHHHHCCCCCC
Q 003913 187 ADYMGKERKFAKCRDIFDDIINQGRVPS 214 (787)
Q Consensus 187 i~~~~~~g~~~~A~~~f~~m~~~g~~pd 214 (787)
+...++.|+++.+..+++.+.+.|..++
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 40 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELD 40 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 3344556666666666666655554433
No 288
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=32.56 E-value=1.1e+02 Score=26.93 Aligned_cols=55 Identities=15% Similarity=0.110 Sum_probs=36.1
Q ss_pred HHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHH
Q 003913 489 KAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIESA 543 (787)
Q Consensus 489 ~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p~ 543 (787)
++.++|..|..+|.-.--..-|......+...|++.+|.++|+.-++.+-.|...
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 3666777777776223335566666667777788888888887777766544433
No 289
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=31.69 E-value=2.4e+02 Score=26.42 Aligned_cols=21 Identities=10% Similarity=0.183 Sum_probs=13.1
Q ss_pred HHHHHHcCChHHHHHHHHHHH
Q 003913 374 MEAYAKIGEFMKSLEIFREMQ 394 (787)
Q Consensus 374 i~~~~~~g~~~~A~~~~~~m~ 394 (787)
++.+....++++|.+++++..
T Consensus 25 LDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 566666666666666666554
No 290
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=30.84 E-value=1.4e+02 Score=25.96 Aligned_cols=62 Identities=15% Similarity=0.220 Sum_probs=31.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHcCC
Q 003913 475 GIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGD--FVKAEKIYDLMCLKKY 538 (787)
Q Consensus 475 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~--~~~A~~~~~~m~~~g~ 538 (787)
+.+|.-|...|+.++|...++++.... + -...+..++..++-+.++ .+.+..++..+...|+
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~-f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~ 76 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPH-F-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 76 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGG-G-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCc-c-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 445566666666666666666654221 1 123444455555555322 3445566666655554
No 291
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=29.43 E-value=2.4e+02 Score=24.39 Aligned_cols=54 Identities=7% Similarity=0.046 Sum_probs=35.0
Q ss_pred HHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCccCH
Q 003913 489 KAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGDFVKAEKIYDLMCLKKYEIES 542 (787)
Q Consensus 489 ~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~p 542 (787)
++.++|..|..+|.-.--..-|......+...|++.+|.++|+.-++.+-.|-.
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 367777777777622233456666666777777777777777777776644433
No 292
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=28.34 E-value=4.7e+02 Score=26.30 Aligned_cols=66 Identities=14% Similarity=0.202 Sum_probs=39.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCCC
Q 003913 370 FVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEE--TELTESLMKEFVETGMKPL 436 (787)
Q Consensus 370 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~ 436 (787)
.+.++.=|...|+.++|.+.++++...... ..+...++..++-+.++ .+....++..+.+.|+-+.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~ 287 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 287 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCH
Confidence 456788888888888888888887532221 23344455555554332 3456667777776665443
No 293
>1dm5_A Annexin XII E105K mutant homohexamer; novel PH-dependent hexamerization switch E76, low calcium form; 1.93A {Hydra vulgaris} SCOP: a.65.1.1 PDB: 1aei_A
Probab=26.81 E-value=4.3e+02 Score=26.00 Aligned_cols=180 Identities=16% Similarity=0.169 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhcCCCccCHHHHHHHHHHHHccC--ChhHHHHHHHHHHHCCCCCCHhH-----HHHHHHHHhcCCcCCC
Q 003913 161 ETGFRVYEWMMQQHWYRFDFALATKLADYMGKER--KFAKCRDIFDDIINQGRVPSEMT-----FHILIVAYLSAPVQGC 233 (787)
Q Consensus 161 ~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~f~~m~~~g~~pd~~t-----y~~li~~~~~~~~~g~ 233 (787)
..|..+++.|...| .-...++..++... ++....+.|..+-...+.-++.. |..++.+++...+...
T Consensus 88 ~dA~~L~~A~kg~G------tde~~lieIL~tRs~~ql~~i~~~Y~~~yg~~Le~dI~~e~sG~~~~~L~~lv~~~r~~~ 161 (315)
T 1dm5_A 88 FLAEQLHAAMKGLG------TDKNALIDILCTQSNAQIHAIKAAFKLLYKEDLEKEIISETSGNFQRLLVSMLQGGRKED 161 (315)
T ss_dssp HHHHHHHHHHHSSS------CCHHHHHHHHSSCCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHTTCCCTT
T ss_pred HHHHHHHHHhhcCC------CchhhhhhhHhcCCHHHHHHHHHHHHHHhCccHHHHHHhccCchHHHHHHHHHccccCCC
Q ss_pred H--------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHcCC------ccCHHHHH
Q 003913 234 L--------DEACSIYNRMIQLGGYQPRPSLHNSLFRALVSKPGGLSKYYLQQAEFIFHNLLTSGL------EIQKDIYS 299 (787)
Q Consensus 234 ~--------~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~~g~~~~A~~~~~~m~~~~~------~p~~~~~~ 299 (787)
. ..|..+++.|.. +.-.|..++..+|..-+.. ++......|+++-...+ ..+-+.-.
T Consensus 162 ~~vd~~~a~~dA~~L~~A~~~--~~GTde~~lirIl~~Rs~~-------~L~~i~~~Y~~~~g~~L~~~I~~e~sGd~~~ 232 (315)
T 1dm5_A 162 EPVNAAHAAEDAAAIYQAGEG--QIGTDESRFNAVLATRSYP-------QLHQIFHEYSKISNKTILQAIENEFSGDIKN 232 (315)
T ss_dssp CCCCHHHHHHHHHHHHHHTTT--SSSCCHHHHHHHHHHSCHH-------HHHHHHHHHHHHSSSCHHHHHHHHCCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhhC--cCCCcHHHHHHHHHhCCHH-------HHHHHHHHHHHHhCCCHHHHHhhhcCchHHH
Q ss_pred HHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003913 300 GLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLLSVLRVCAKEGDVEDAEKTWLRL 358 (787)
Q Consensus 300 ~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m 358 (787)
.|+.+..+..+...-.|..+++.|. |.-.|..+...+|-. ...-++....+.|+++
T Consensus 233 ~Llalv~~~~~~~~~~A~~L~~am~--g~Gtd~~~Liriiv~-rse~dl~~Ik~~y~~~ 288 (315)
T 1dm5_A 233 GLLAIVKSVENRFAYFAERLHHAMK--GLGTSDKTLIRILVS-RSEIDLANIKETFQAM 288 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC--TTCCCHHHHHHHHHH-HTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHhcCchHHHHHHHHHHhh--cCCCCHHHHhHHHHh-cCHHHHHHHHHHHHHH
No 294
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=26.62 E-value=2.9e+02 Score=25.92 Aligned_cols=91 Identities=12% Similarity=-0.002 Sum_probs=47.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC--CCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003913 336 LSVLRVCAKEGDVEDAEKTWLRLLES--DNGI----PTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKII 409 (787)
Q Consensus 336 ~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 409 (787)
---++.+....++++|..++++..+. +..+ ....-...+..-.....-.-+..+.+++.. .++...-...+
T Consensus 22 ~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v 98 (235)
T 2d2s_A 22 VEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGT 98 (235)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHH
T ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHH
Confidence 35688899999999999999877653 2221 001111222222322233333333344422 33444455555
Q ss_pred HHHHhcCChHHHHHHHHHHH
Q 003913 410 ELLCKAEETELTESLMKEFV 429 (787)
Q Consensus 410 ~~~~~~g~~~~A~~l~~~m~ 429 (787)
..+.+.|+.++|.++|=+..
T Consensus 99 ~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 99 ENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCCChhHHHHHHHHHH
Confidence 66666666666666665544
No 295
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=26.32 E-value=98 Score=26.89 Aligned_cols=63 Identities=14% Similarity=0.191 Sum_probs=29.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCC
Q 003913 371 VYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAEE--TELTESLMKEFVETGMK 434 (787)
Q Consensus 371 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~ 434 (787)
+.++.-|...|+.++|.+.++++...... ..+...++..++-+.+. .+.+..++..+.+.|+-
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 44566666666666666666665421111 12233334444443221 23444555555554433
No 296
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=25.05 E-value=75 Score=28.55 Aligned_cols=91 Identities=12% Similarity=0.123 Sum_probs=42.0
Q ss_pred HHccCChhHHHHHHHHHHHCCCC-CC-HhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHH
Q 003913 190 MGKERKFAKCRDIFDDIINQGRV-PS-EMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPS---LHNSLFRAL 264 (787)
Q Consensus 190 ~~~~g~~~~A~~~f~~m~~~g~~-pd-~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~---t~~~ll~~~ 264 (787)
.++.|+++....++.. ++. .+ ..-++.|..+. ..|+.+.-.++.+.+.+. |..++.. -.+.|..++
T Consensus 13 Aa~~g~~~~~~~l~~~----~~~~~~~~~g~T~Lh~A~----~~~~~~~~~~iv~~Ll~~-Gadvn~~d~~g~TpLh~a~ 83 (186)
T 3t8k_A 13 AAMLGTYEDFLELFEK----GYEDKESVLKSNILYDVL----RNNNDEARYKISMFLINK-GADIKSRTKEGTTLFFPLF 83 (186)
T ss_dssp HHHHSCHHHHHHHHHH----SSSCHHHHHTTTHHHHHT----TCSCHHHHHHHHHHHHHT-TCCSSCCCTTCCCTHHHHH
T ss_pred HHHcCCHHHHHHHHhc----CcccccccCCCCHHHHHH----HcCCcchHHHHHHHHHHC-CCCCCCCCCCCCcHHHHHH
Confidence 3456777665555432 211 11 12234444443 356666555666666664 5665542 122233222
Q ss_pred HcCCCCCChhhHHHHHHHHHHHHHcCCccC
Q 003913 265 VSKPGGLSKYYLQQAEFIFHNLLTSGLEIQ 294 (787)
Q Consensus 265 ~~~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 294 (787)
.... .......++.+.+++.|..++
T Consensus 84 ~~~~-----~~~~~~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 84 QGGG-----NDITGTTELCKIFLEKGADIT 108 (186)
T ss_dssp HHCT-----TCHHHHHHHHHHHHHTTCCSS
T ss_pred HcCC-----cchhhHHHHHHHHHHCCCCCC
Confidence 2211 133444555566666665543
No 297
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=23.82 E-value=46 Score=23.60 Aligned_cols=23 Identities=13% Similarity=0.268 Sum_probs=18.5
Q ss_pred CCHHHHHHHHHHhhhCCCCCCCH
Q 003913 485 GNIEKAEEIFNHMHSDQTIGVNT 507 (787)
Q Consensus 485 g~~~~A~~l~~~m~~~~~~~p~~ 507 (787)
-+++.|...|.++...|.|||+.
T Consensus 34 Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 34 WDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCHHHHHHHHHHHHHcCCCCHHH
Confidence 37889999999988877787764
No 298
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=23.43 E-value=27 Score=32.59 Aligned_cols=223 Identities=11% Similarity=-0.003 Sum_probs=0.0
Q ss_pred HHHHHccCChhHHHHHHHHHHHCCCCCCHhHHHHHHHHHhcCCcCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 003913 187 ADYMGKERKFAKCRDIFDDIINQGRVPSEMTFHILIVAYLSAPVQGCLDEACSIYNRMIQLGGYQPRPSLHNSLFRALVS 266 (787)
Q Consensus 187 i~~~~~~g~~~~A~~~f~~m~~~g~~pd~~ty~~li~~~~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~ 266 (787)
+...++.|+++....+++.-...... |..-++.|..+.. .|+.+-+..+++.-... ....+....+.+..++..
T Consensus 13 l~~A~~~g~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~A~~----~~~~~~v~~Ll~~~~~~-~~~~~~~~~t~L~~A~~~ 86 (240)
T 3eu9_A 13 IVKATQYGIYERCRELVEAGYDVRQP-DKENVTLLHWAAI----NNRIDLVKYYISKGAIV-DQLGGDLNSTPLHWATRQ 86 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHHH----TTCHHHHHHHHHTTCCT-TCCBTTTTBCHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHcCCCcCCC-CCCCCCHHHHHHH----hCCHHHHHHHHHcCCcc-hhhcCCcCCChhHHHHHc
Q ss_pred CCCCCChhhHHHHHHHHHHHHHcCCccCHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHh
Q 003913 267 KPGGLSKYYLQQAEFIFHNLLTSGLEIQKDIYSGLIWLHSYQDNIDKERISLLKKEMQQAGFEEGKEVLL--SVLRVCAK 344 (787)
Q Consensus 267 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~--~li~~~~~ 344 (787)
|+.+ +++.+.+.|..++.........+...+..|+.+ +++.+.+.|..++..... +.+...+.
T Consensus 87 -------~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~----~~~~Ll~~~~~~~~~~~~g~t~l~~a~~ 151 (240)
T 3eu9_A 87 -------GHLS----MVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTS----IVAYLIAKGQDVDMMDQNGMTPLMWAAY 151 (240)
T ss_dssp -------TCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred -------CCHH----HHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHH----HHHHHHhcCCCccccCCCCCcHHHHHHH
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCChHHHH
Q 003913 345 EGDVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVPAYH--KIIELLCKAEETELTE 422 (787)
Q Consensus 345 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~li~~~~~~g~~~~A~ 422 (787)
.+......+++.+....--..+...-.+.+...+..|+.+ +.+.+.+.|..++..... +-+...++.|+.+-+.
T Consensus 152 ~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~ 227 (240)
T 3eu9_A 152 RTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTT----VISLLLEAGANVDAQNIKGESALDLAKQRKNVWMIN 227 (240)
T ss_dssp HCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHH----HHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHH
T ss_pred hCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHH----HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHH
Q ss_pred HHHHHHHHcCCC
Q 003913 423 SLMKEFVETGMK 434 (787)
Q Consensus 423 ~l~~~m~~~g~~ 434 (787)
.+++...+.++.
T Consensus 228 ~L~~~~~~~~~~ 239 (240)
T 3eu9_A 228 HLQEARQAKGYD 239 (240)
T ss_dssp HHHHHC------
T ss_pred HHHHhhhccCcC
No 299
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=23.03 E-value=5.9e+02 Score=25.59 Aligned_cols=79 Identities=11% Similarity=0.145 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHcCCccCHHHHHHHHH
Q 003913 473 IYGIYLESLKNAGNIEKAEEIFNHMHSDQTIGVNTRSCNIILSAYLSSGD--FVKAEKIYDLMCLKKYEIESAWMEKLDY 550 (787)
Q Consensus 473 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~~~p~~~~~l~~ 550 (787)
..+.++.=|...|+.++|...++++..-. +. ...+..++..++-+.++ .+...+++..+...|+-...+....+..
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~-fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~ 296 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYER 296 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTT-CH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCc-ch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 35778889999999999999999997432 22 24556777777777543 4668888998988776444444344444
Q ss_pred HHh
Q 003913 551 VLS 553 (787)
Q Consensus 551 ~~~ 553 (787)
++.
T Consensus 297 vl~ 299 (358)
T 3eiq_C 297 IYN 299 (358)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 300
>1dq3_A Endonuclease; PI-PFUI, intein-encoded, hydrolase; 2.10A {Pyrococcus furiosus} SCOP: b.86.1.2 d.50.3.1 d.95.2.2 d.95.2.2
Probab=22.78 E-value=1.2e+02 Score=32.04 Aligned_cols=66 Identities=24% Similarity=0.252 Sum_probs=45.0
Q ss_pred hhcCCcccCCCcEEEEccCCHHHHHHHHHHHhhCCCceEEEecC----cEEEEEEeC-CchHHHHHhccccc
Q 003913 679 FMYGGHRTSVGDILLKLKVSSEGIALVFKTLKARSLDCRVKKKG----RVFWIGFLG-SNSTLFWKLIEPYV 745 (787)
Q Consensus 679 ~m~~g~~~~~g~~~~~~~g~~~e~~~l~~~l~~~gl~~~~~~~~----~~~~i~~~~-~~~~~~~~lv~~~~ 745 (787)
+..||+....+.+-+.+ .+.+-+..+...|...||.+++...+ ..|++||.. ++...|.++|..+.
T Consensus 247 f~adGsv~~~~~l~i~~-~s~~la~~l~~ll~~~Gi~a~i~~~~~~~g~~y~v~i~~~~~i~~Fl~~IG~~~ 317 (454)
T 1dq3_A 247 FDAEGHVSNKPGIELGM-VNKRLIEDVTHYLNALGIKARIREKLRKDGIDYVLHVEEYSSLLRFYELIGKNL 317 (454)
T ss_dssp HHHHCEEETTTEEEEEE-SCHHHHHHHHHHHHTTTCCCEEEEEECSSSEEEEEEECCHHHHHHHHHHTGGGC
T ss_pred HhCCCcccCCCCEEEEE-CCHHHHHHHHHHHHHCCCeEEEEEEccCCCcEEEEEEccHHHHHHHHHHhCccc
Confidence 34555543223333333 45666777777777779999986433 479999985 78899999998765
No 301
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=22.24 E-value=6.4e+02 Score=25.72 Aligned_cols=90 Identities=13% Similarity=-0.025 Sum_probs=56.0
Q ss_pred hhhccCCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCCHHHHHHH----
Q 003913 305 HSYQDNIDKERISLLKKEMQQAGFEEG-----KEVLLSVLRVCAKEGDVEDAEKTWLRLLESD--NGIPTPAFVYK---- 373 (787)
Q Consensus 305 ~~~~~~g~~~~a~~l~~~m~~~g~~p~-----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~l---- 373 (787)
..|...|++.+|.+++.++.+.=-..| ..+|..-+..|...+++..+...+....... +.+++..-..+
T Consensus 107 ~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~ 186 (394)
T 3txn_A 107 ALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQS 186 (394)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHh
Confidence 667788889998888888876422212 2345666777778888888888877665431 21333332221
Q ss_pred HHHHH-HcCChHHHHHHHHHHH
Q 003913 374 MEAYA-KIGEFMKSLEIFREMQ 394 (787)
Q Consensus 374 i~~~~-~~g~~~~A~~~~~~m~ 394 (787)
.-.+. ..+++..|...|-+..
T Consensus 187 Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 187 GILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHH
T ss_pred hHHHHHhccCHHHHHHHHHHHH
Confidence 33344 6778888877776653
No 302
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=21.71 E-value=40 Score=31.32 Aligned_cols=18 Identities=6% Similarity=0.004 Sum_probs=9.7
Q ss_pred HHHHccCChhHHHHHHHH
Q 003913 188 DYMGKERKFAKCRDIFDD 205 (787)
Q Consensus 188 ~~~~~~g~~~~A~~~f~~ 205 (787)
...++.|+++....+++.
T Consensus 11 ~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 11 CNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHh
Confidence 334455666655555554
No 303
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=21.61 E-value=66 Score=31.26 Aligned_cols=154 Identities=8% Similarity=0.016 Sum_probs=66.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH---HHHHHHH
Q 003913 337 SVLRVCAKEGDVEDAEKTWLRLLESDNGIPT---PAFVYKMEAYAKIGEFMKSLEIFREMQERLGSASVP---AYHKIIE 410 (787)
Q Consensus 337 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~li~ 410 (787)
+.+...+..|+.+-+..++ +.|..++. .-++ .+...+..|+.+-+..++ +.|..++.. -|.+.+.
T Consensus 64 t~L~~A~~~g~~~~v~~Ll----~~ga~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll----~~ga~~~~~~~~g~~t~L~ 134 (285)
T 3kea_A 64 FPLHQAATLEDTKIVKILL----FSGLDDSQFDDKGNT-ALYYAVDSGNMQTVKLFV----KKNWRLMFYGKTGWKTSFY 134 (285)
T ss_dssp CHHHHHTTSSSCHHHHHHH----HTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHH----HHCGGGGGCSSSGGGSHHH
T ss_pred CHHHHHHHcCCHHHHHHHH----HCCCCCCCcCCCCCc-HHHHHHHcCCHHHHHHHH----hcCCCCCccCCCCCCCHHH
Confidence 3444455566655444333 34443321 1112 233344556655443333 334433322 2233444
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCHHH
Q 003913 411 LLCKAEETELTESLMKEFVETGMKP-LMPSYINLTNMYLNLGMHDRLHLAFSECLEKCRPNRTIYGIYLESLKNAGNIEK 489 (787)
Q Consensus 411 ~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~~~p~~~~~~~li~~~~~~g~~~~ 489 (787)
..+..|..+- .+.+.+.|..+ +...-.+.+...+..|..+-+..+++.-..-...|..-++..+..-++.|+.+
T Consensus 135 ~A~~~~~~~~----v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~- 209 (285)
T 3kea_A 135 HAVMLNDVSI----VSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIE- 209 (285)
T ss_dssp HHHHTTCHHH----HHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHH-
T ss_pred HHHHcCCHHH----HHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHH-
Confidence 4555666543 34444444333 11122344455566777776666665533211111111122233334456643
Q ss_pred HHHHHHHhhhCCCCCCCHH
Q 003913 490 AEEIFNHMHSDQTIGVNTR 508 (787)
Q Consensus 490 A~~l~~~m~~~~~~~p~~~ 508 (787)
+.+.+.+.| ..|+..
T Consensus 210 ---~v~~Ll~~g-ad~~~~ 224 (285)
T 3kea_A 210 ---MLQALFKYD-INIYSA 224 (285)
T ss_dssp ---HHHHHTTSC-BCSTTT
T ss_pred ---HHHHHHHcC-CCCCCC
Confidence 444455556 445544
No 304
>4e1p_A Protein LSR2; anti-parallel beta sheet, dimer, DNA binding protein; 1.73A {Mycobacterium tuberculosis}
Probab=21.49 E-value=23 Score=25.22 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=24.3
Q ss_pred ecCcEEEEEEeCCchHHHHHhcccccc
Q 003913 720 KKGRVFWIGFLGSNSTLFWKLIEPYVL 746 (787)
Q Consensus 720 ~~~~~~~i~~~~~~~~~~~~lv~~~~~ 746 (787)
-.|..|.|=+...+..+|++.+.|||-
T Consensus 27 ldG~~YeIDLs~~nA~~lr~~L~~yi~ 53 (61)
T 4e1p_A 27 LDGVTYEIDLSTKNATKLRGDLKQWVA 53 (61)
T ss_dssp ETTEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred ECCEEEEEECCHHHHHHHHHHHHHHHH
Confidence 457789999999999999999999983
No 305
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=20.78 E-value=49 Score=31.45 Aligned_cols=21 Identities=14% Similarity=0.010 Sum_probs=12.4
Q ss_pred HHHHHcCCCHHHHHHHHHHHH
Q 003913 514 LSAYLSSGDFVKAEKIYDLMC 534 (787)
Q Consensus 514 i~~~~~~g~~~~A~~~~~~m~ 534 (787)
+...++.|+.+-+..++++-.
T Consensus 229 L~~A~~~g~~~~v~~Ll~~g~ 249 (260)
T 3jxi_A 229 LMMAAKTGKIGIFQHIIRREI 249 (260)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHhCC
Confidence 334456777776666665544
No 306
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=20.09 E-value=2.7e+02 Score=20.59 Aligned_cols=58 Identities=19% Similarity=0.311 Sum_probs=24.8
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 003913 323 MQQAGFEEGKEVLLSVLRVCAKEG-DVEDAEKTWLRLLESDNGIPTPAFVYKMEAYAKIG 381 (787)
Q Consensus 323 m~~~g~~p~~~t~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 381 (787)
|.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|-.-.+..+.+.|
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 344454444322 23333333332 33344555555555444334444444444444444
No 307
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=20.04 E-value=4.9e+02 Score=23.60 Aligned_cols=43 Identities=9% Similarity=0.016 Sum_probs=25.0
Q ss_pred HHHHHHH---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003913 373 KMEAYAK---IGEFMKSLEIFREMQERLGSASVPAYHKIIELLCKAE 416 (787)
Q Consensus 373 li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 416 (787)
+|+++.| ..+.+.|+-.+-+|++.| .|..+.-..++.+.-..|
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 4555544 366777777777777777 554444444444444444
Done!