Query 003915
Match_columns 787
No_of_seqs 315 out of 2068
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 08:11:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003915.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003915hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zze_A Alanyl-tRNA synthetase; 100.0 4E-197 1E-201 1708.8 45.1 620 54-784 53-737 (752)
2 2ztg_A Alanyl-tRNA synthetase; 100.0 2E-184 7E-189 1601.1 42.8 610 54-784 56-723 (739)
3 3hy0_A Alanyl-tRNA synthetase; 100.0 6E-176 2E-180 1433.0 28.4 424 58-506 2-438 (441)
4 1yfs_A Alanyl-tRNA synthetase; 100.0 2E-175 5E-180 1437.3 24.7 423 58-508 3-430 (465)
5 3kew_A DHHA1 domain protein; s 100.0 7.4E-52 2.5E-56 431.9 21.5 208 538-785 9-216 (241)
6 2e1b_A PH0108, 216AA long hypo 100.0 3.2E-48 1.1E-52 398.4 13.9 190 539-785 12-203 (216)
7 1v4p_A Alanyl-tRNA synthetase; 99.9 1.5E-25 5.1E-30 218.5 14.1 130 640-785 4-137 (157)
8 1tke_A Threonyl-tRNA synthetas 99.9 2E-23 7E-28 215.0 14.1 154 605-784 39-202 (224)
9 1nyr_A Threonyl-tRNA synthetas 99.8 2.6E-21 8.9E-26 227.4 10.5 155 606-784 42-201 (645)
10 1qf6_A THRRS, threonyl-tRNA sy 99.8 2E-20 6.8E-25 219.7 13.7 153 606-784 40-202 (642)
11 3rf1_A Glycyl-tRNA synthetase 95.8 0.034 1.2E-06 57.9 10.1 180 53-312 20-201 (311)
12 1j5w_A Glycyl-tRNA synthetase 90.7 0.75 2.6E-05 47.7 8.9 175 58-312 13-189 (298)
13 4dh4_A MIF; trimer, isomerase; 68.3 2.5 8.6E-05 38.0 2.5 30 163-192 72-101 (114)
14 2dq3_A Seryl-tRNA synthetase; 66.1 7.4 0.00025 43.3 6.3 110 60-182 175-316 (425)
15 3fwu_A Macrophage migration in 62.6 4 0.00014 38.1 2.8 30 163-192 93-122 (133)
16 3djh_A Macrophage migration in 62.5 3.8 0.00013 36.9 2.5 29 164-192 72-100 (114)
17 3kan_A D-dopachrome tautomeras 61.0 4.1 0.00014 37.0 2.5 29 164-192 73-101 (117)
18 3b64_A Macrophage migration in 60.9 4.6 0.00016 36.0 2.8 30 163-192 72-101 (112)
19 3fwt_A Macrophage migration in 58.2 4.9 0.00017 37.5 2.5 30 163-192 93-122 (133)
20 2cja_A Seryl-tRNA synthetase; 58.2 29 0.00097 39.7 9.3 53 121-182 346-407 (522)
21 3t5s_A Gilaa.00834.A, macropha 56.3 5.2 0.00018 37.4 2.4 29 164-192 94-122 (135)
22 2wkb_A Macrophage migration in 55.4 6.4 0.00022 35.9 2.8 31 162-192 71-101 (125)
23 1hfo_A Migration inhibitory fa 54.8 6.1 0.00021 35.1 2.5 30 163-192 71-100 (113)
24 2xcz_A Possible ATLS1-like lig 54.7 6.1 0.00021 35.3 2.5 29 164-192 73-101 (115)
25 1uiz_A MIF, macrophage migrati 53.2 6.7 0.00023 35.0 2.5 29 164-192 73-101 (115)
26 2os5_A Acemif; macrophage migr 53.1 6.7 0.00023 35.3 2.5 29 164-192 73-101 (119)
27 1nnh_A Asparaginyl-tRNA synthe 46.6 7.8 0.00027 40.9 2.1 109 60-179 18-141 (294)
28 1otf_A 4-oxalocrotonate tautom 44.6 11 0.00039 29.3 2.3 30 163-192 15-44 (62)
29 2opa_A Probable tautomerase YW 44.6 11 0.00039 29.2 2.3 30 163-192 15-44 (61)
30 3n4h_A Putative tautomerase; C 43.5 12 0.00039 35.2 2.6 53 163-215 77-134 (148)
31 3abf_A 4-oxalocrotonate tautom 43.0 15 0.0005 28.9 2.8 29 164-192 17-45 (64)
32 1gyx_A YDCE, B1461, hypothetic 38.1 35 0.0012 28.1 4.5 42 163-211 16-57 (76)
33 1eh2_A EPS15; calcium binding, 36.4 75 0.0026 27.9 6.7 48 453-500 27-78 (106)
34 1mww_A Hypothetical protein HI 33.3 21 0.00072 32.4 2.5 30 163-192 74-103 (128)
35 3m21_A Probable tautomerase HP 32.2 27 0.00093 28.0 2.8 29 164-192 19-47 (67)
36 3m20_A 4-oxalocrotonate tautom 31.8 35 0.0012 26.9 3.3 29 164-192 15-43 (62)
37 2aal_A Malonate semialdehyde d 30.5 25 0.00085 32.1 2.5 29 164-192 81-109 (131)
38 3a5y_A GENX, putative lysyl-tR 29.9 19 0.00065 38.9 1.9 103 62-180 41-160 (345)
39 1c07_A Protein (epidermal grow 29.7 1E+02 0.0035 26.0 6.3 48 453-500 23-74 (95)
40 3mb2_A 4-oxalocrotonate tautom 29.3 29 0.001 28.2 2.5 29 164-192 17-45 (72)
41 2x4k_A 4-oxalocrotonate tautom 28.3 30 0.001 26.6 2.3 29 164-192 19-47 (63)
42 1wyd_A Hypothetical aspartyl-t 27.4 23 0.00077 39.5 1.9 103 60-176 137-247 (429)
43 1qjt_A EH1, epidermal growth f 27.2 1.2E+02 0.0042 25.9 6.4 46 454-499 25-74 (99)
44 3nem_A Aspartyl-tRNA synthetas 27.1 22 0.00077 39.6 1.9 28 288-315 402-429 (438)
45 1vp7_A Exodeoxyribonuclease VI 27.0 46 0.0016 29.8 3.5 31 438-468 32-62 (100)
46 4gyx_A Type III collagen fragm 26.2 24 0.00081 24.1 1.1 10 231-240 19-28 (31)
47 3bju_A Lysyl-tRNA synthetase; 26.2 24 0.00082 40.3 1.9 99 62-175 181-297 (521)
48 3fia_A Intersectin-1; EH 1 dom 26.1 1.1E+02 0.0039 27.9 6.1 48 453-500 45-96 (121)
49 3m4p_A Ehasnrs, asparaginyl-tR 26.0 24 0.00082 39.6 1.8 89 62-162 161-257 (456)
50 1n9w_A Aspartyl-tRNA synthetas 25.3 22 0.00074 39.5 1.3 104 60-177 128-240 (422)
51 3i7f_A Aspartyl-tRNA synthetas 25.2 25 0.00087 40.4 1.9 88 61-162 248-347 (548)
52 1e1o_A Lysyl-tRNA synthetase, 25.0 26 0.00089 39.8 1.9 104 61-176 187-298 (504)
53 4ex5_A Lysine--tRNA ligase; st 24.9 26 0.00088 40.1 1.9 100 61-175 208-325 (529)
54 3a74_A Lysyl-tRNA synthetase; 24.9 26 0.0009 39.7 1.9 105 61-177 178-290 (493)
55 1x54_A Asparaginyl-tRNA synthe 24.7 27 0.00091 38.9 1.9 105 60-177 138-249 (434)
56 2xgt_A Asparaginyl-tRNA synthe 24.6 26 0.00091 38.9 1.8 100 62-175 137-244 (435)
57 1eov_A ASPRS, aspartyl-tRNA sy 23.7 28 0.00097 39.3 1.9 100 61-176 182-293 (487)
58 1iq3_A Ralbp1-interacting prot 23.5 1E+02 0.0035 27.1 5.3 46 454-499 36-85 (110)
59 1fi6_A EH domain protein REPS1 22.9 1.2E+02 0.0041 25.3 5.4 46 454-499 23-72 (92)
60 3ry0_A Putative tautomerase; o 22.9 43 0.0015 26.5 2.3 30 163-192 15-44 (65)
61 1eov_A ASPRS, aspartyl-tRNA sy 21.8 60 0.002 36.7 4.0 28 288-315 451-478 (487)
62 2mys_C Myosin; muscle protein, 21.7 2.2E+02 0.0075 24.5 7.2 18 454-471 99-116 (149)
63 1x54_A Asparaginyl-tRNA synthe 21.2 18 0.00063 40.2 -0.3 30 285-315 396-425 (434)
64 1c0a_A Aspartyl tRNA synthetas 21.2 33 0.0011 39.6 1.8 32 285-317 525-556 (585)
65 1l0w_A Aspartyl-tRNA synthetas 20.8 35 0.0012 39.5 1.9 29 288-316 521-549 (580)
No 1
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=100.00 E-value=3.7e-197 Score=1708.76 Aligned_cols=620 Identities=27% Similarity=0.433 Sum_probs=563.4
Q ss_pred CCCCCChHHHHHHHHHhhhcCC---CeEecCCCCccCCCCCcceecccccccccccc-CCCCCCCccccccccccccccc
Q 003915 54 QVVEWPATKVRDTFFKFFEDKN---HVNWKSSPVVPVNDPTLLFANAGMNQYKPIFL-GTADPNTQLSKLTRACNTQKCI 129 (787)
Q Consensus 54 ~~~~~~~~eiR~~Fl~fF~~~g---H~~v~ssslvp~~dp~llf~nAGm~~fkp~fl-G~~~p~~~~~~~~r~~~~QkCi 129 (787)
..++||++|||++||+||++|| |++||||||||+||||||||||||+||||||+ |.++|| ++|+|+|||||
T Consensus 53 ~~~~~~~~eiR~~fl~fF~~kg~~~H~~v~s~~lvp~~dptllftnAGm~~fk~~f~~G~~~pp-----~~r~~~~QkCi 127 (752)
T 2zze_A 53 IPRXYTLDEMREXFLRFFEXHEIYPHGRVXRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPP-----ANPLVISQPSI 127 (752)
T ss_dssp SSSCCCHHHHHHHHHHHHHTCSSSCCEECCCCCSSCTTCSSCSSCCSGGGGGTTHHHHTSSCCS-----SSSEEEEEEEE
T ss_pred ccccCCHHHHHHHHHHHHhccCCCcceEEeccCcccCCCCCeeeeecchhhhhHhhcCCCcCCC-----CCCccccccce
Confidence 4467999999999999999999 99999999999999999999999999999997 999886 47999999999
Q ss_pred ccCCCCCCCCCCCCCCCcchhhhhccccccc-----cccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHH
Q 003915 130 RAGGKHNDLDDVGKDTYHHTFFEMLGNWSFG-----DYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNE 204 (787)
Q Consensus 130 R~gGkhnDld~VG~t~rHhTfFEMLGnfSFg-----dYfK~eAi~~awe~Lt~~lgl~~~rL~vT~~~~d~~~~l~~D~E 204 (787)
|+ |||||||+|+||||||||||||||| ||||+|||+|||||||++||||++||+ +
T Consensus 128 R~----~DlenVG~t~rHhTfFEMlGnfSFg~~~~~dYfK~eaI~~awe~lT~~~gl~~~ri~--~-------------- 187 (752)
T 2zze_A 128 RF----TDIDNVGITGRHFTIFEMMAHHAFNYPGXPIYWMDETVELAFEFFTKELXMXPEDIT--F-------------- 187 (752)
T ss_dssp CC----TTGGGTTTSSSCCSEEEEEEEEEEECTTCCCCCHHHHHHHHHHHHHHTSCCCGGGEE--E--------------
T ss_pred ec----CcHhhcCCCCcchhHHHhCccceeCCCchHHHHHHHHHHHHHHHHhhhhhcchhhee--e--------------
Confidence 97 7999999999999999999999999 999999999999999999999999994 2
Q ss_pred HHHHHHhcCCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCceEEEeeeecccc----------
Q 003915 205 ARDIWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQF---------- 274 (787)
Q Consensus 205 ~~~iW~~~~~~~rI~~~~~~dNfW~mG~~GpCGPCsEI~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmqy---------- 274 (787)
+||||+|| |||||||||||| + |||||||||||
T Consensus 188 -------------------~dNfW~~G--GpcGPcsEI~~d---g--------------lEiwNlVFmq~~~~~~~~~~~ 229 (752)
T 2zze_A 188 -------------------KENPWAGG--GNAGPAFEVLYR---G--------------LEVATLVFMQYXXAPENAPQD 229 (752)
T ss_dssp -------------------EECCEEET--TEEECEEEEEET---T--------------EEEEEEEEEEEEECCTTCCSC
T ss_pred -------------------ccCcccCC--CCCCCceeEEEC---C--------------Eeeeeeeeeeecccccccccc
Confidence 68999999 999999999997 1 99999999999
Q ss_pred ---ccCCCCccccCCCCccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCC-----------CCCCCCCCCCc
Q 003915 275 ---NRESDGSLKPLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGAR-----------PYSGKVGADDA 340 (787)
Q Consensus 275 ---~r~~~g~l~~Lp~~~IDTGmGlERl~~vlqg~~snydtD~F~pli~~i~~~~~~~-----------~y~g~~~~~~~ 340 (787)
|| ++|+|.|||+||||||||||||+|||||++||||| +|.|||++|++++|++ +|+|.++.++.
T Consensus 230 ~~~~~-~~g~~~~Lp~~~IDTGmGlERl~~vlQg~~snydt-~f~pii~~~~~~~g~~y~~~~~~~~~a~~~g~~~~~~~ 307 (752)
T 2zze_A 230 QVVVI-XGEKYIPMETXVVDTGYGLERLVWMSQGTPTAYDA-VLGYVVEPLXXMAGIEKIDEKILMENSRLAGMFDIEDL 307 (752)
T ss_dssp CEEET-TTEEEEEEEEEEEEEEEEHHHHHHHHHCCSSHHHH-HSHHHHHHHHHHHTCCCCCHHHHHHHHHHHHTCCSSSS
T ss_pred chhcc-cCCeeeeCCccccccccCHHHHHHHHcCCCchHHH-HHHHHHHHHHHhcCCCccchhhhhhhhhccccCCccch
Confidence 88 69999999999999999999999999999999999 9999999999999986 23454442221
Q ss_pred ccc------------------------cchhhhhhhhhhheeeeecCCCccCCCCCchHHHHHHHHHHHHHHhhhCCCcc
Q 003915 341 DKV------------------------DMAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDG 396 (787)
Q Consensus 341 ~~~------------------------~~~~rviaDH~R~~~f~i~DGv~Psn~grgYvlRrilRRa~r~~~~~lg~~~~ 396 (787)
+.+ +.++||||||+||++|||+||++|||+|||||||||||||+|++ ++||++.+
T Consensus 308 ~~~~~~~~~va~~~~~~~~~~~~~~~~~~~~rvIaDH~R~~~f~i~DGv~PsN~GrGYvlRrilRRa~r~~-~~lg~~~~ 386 (752)
T 2zze_A 308 GDLRYLREQVAKRVGITVEELEKAIRPYELIYAIADHTKALTFMLADGVVPSNVXAGYLARLLIRKSIRHL-RELGLEVP 386 (752)
T ss_dssp SCHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSSHHHHHHHHHHHHHHHHH-HHTTCCCC
T ss_pred hhHHHHHHHHHHhcCCCHHHHhhhccccceEEEehhhhhhhhhhcccCCCcCccchhHHHHHHHHHHHHHH-HHhCCCcc
Confidence 111 45889999999999999999999999999999999999999999 47999999
Q ss_pred hhhhHHHHHHHHhcCCChhhHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCChHHHHHhhhcCCCCh
Q 003915 397 FFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQ---GKVLSGQDAFILWDTYGFPL 473 (787)
Q Consensus 397 fl~~lv~~v~~~m~~~ypeL~~~~~~I~~ii~~EE~~F~~TL~~G~~~l~~~i~~~~---~~~isg~~af~LydTyGfP~ 473 (787)
|++||++|++.|++.||||.++++.|++||+.||++|.+||++|+++|++++++++ ++.|||++||+||||||||+
T Consensus 387 -l~~lv~~~~~~m~~~ypel~~~~~~I~~vi~~EE~~F~~Tl~~G~~~l~~~~~~~~~~~~~~l~g~~af~LyDTyGfP~ 465 (752)
T 2zze_A 387 -LSEIVALHIXELHKTFPEFXEMEDIILEMIELEEKXYAETLRRGSDLVRREIAKLKKKGIKEIPVEXLVTFYESHGLTP 465 (752)
T ss_dssp -HHHHHHHHHHHHTTTCTHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHHCCCH
T ss_pred -hhHHHHHHHHHhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccCHHHHHHHHhccCCCH
Confidence 99999999999999999999999999999999999999999999999999998874 25799999999999999999
Q ss_pred hhHHHHHHHcCcccChh-hHHHHHHHHHHHhHhhhhcccCCccccchHHHHHHhhcCCCCcccCCCcc--cceeecEEEE
Q 003915 474 DLTQLMAEERGLLVDIE-GFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFI--WFQDHKSVIK 550 (787)
Q Consensus 474 dlt~~ia~e~gl~vD~~-~F~~~m~~~r~~sr~~~~~~~~~~~~~~~~~~~~l~~~~~~~T~~~~~Y~--y~~~~~akVl 550 (787)
|||++||+|+|++||++ +|+++|++||+++|++...... +. ..+ ...++|+ +.+|+ |..+++|+|+
T Consensus 466 dlt~~ia~e~g~~vd~~~~F~~~m~~q~~~~r~~~~~~~~-----~~---~~~--~~~~~T~-~l~Y~~~yl~~~~a~Vl 534 (752)
T 2zze_A 466 EIVXEIAEKEGVKVNIPDNFYSMVAKEAERTKEEKGEELV-----DF---ELL--KDLPDTR-RLYYEDPFMXEFDAXVL 534 (752)
T ss_dssp HHHHHHHTTSSCCCCCCTTHHHHHHGGGGCC-------CC-----CS---SSS--SSSCCCE-EHHHHCTTCCEEEEEEE
T ss_pred HHHHHHHHHcCCccCCcccHHHHHHHHHHHHhhcccccch-----hh---HHh--ccCCCce-eecccCCccceEEEEEE
Confidence 99999999999999999 8999999999998865211100 00 011 1345675 66777 4589999999
Q ss_pred EEEeCCeeeeeecCCCeEEEEEccceeeeCCCCccCcceEEEecCceEEEEeEEEECCEEEEEEEeecCCCcCCCCCEEE
Q 003915 551 AIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRFSVGEEVI 630 (787)
Q Consensus 551 ai~~~~~~v~~~~~~~~~~VvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~k~~g~ivH~~~~~~~~~~l~~G~~V~ 630 (787)
++.. .+||||+|||||||||||+|+|+|..++..+.|.+|++.+|.++|.+.. . +.+++|++|.
T Consensus 535 ~i~~-------------~~VVLD~TpFYpEgGGQ~~D~G~I~~~g~~~~V~dv~k~~g~ivH~~~~-~--~~l~vGd~V~ 598 (752)
T 2zze_A 535 RVIX-------------DWVILDATAFYPEGGGQPYDTGVLIVNGREVXVTNVQXVGXVIIHXVED-P--GAFXEGMIVH 598 (752)
T ss_dssp EEET-------------TEEEESEECSCCSBTTBCCCCEEEEETTEEEEEEEEEEETTEEEEEESC-G--GGCCTTCEEE
T ss_pred EEEc-------------CEEEEeCCCCCCCCCCCCCCEEEEEeCCEEEEEEeeeecCcEEEEeccc-c--CccCcCCeEE
Confidence 9974 3699999999999999999999998877789999999999999999864 3 6789999999
Q ss_pred EEEehhchhhhcccccHHHHHHHHHHHHhCCcceeeeecccCCceEEEeeCCCCCCHHHHHHHHHHHHHHHHcCCCEEEE
Q 003915 631 CKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSK 710 (787)
Q Consensus 631 ~~VD~erR~~~~r~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~RfDFs~~~~lt~eeL~~IE~~vNe~I~~n~pV~~~ 710 (787)
++|||+||+.+|++|||+|||++||+++||.|++|+|+++.++++||||++++++|++++++||+.||++|++|+||++.
T Consensus 599 ~~VD~~rR~~~mr~HTAtHLL~~ALr~vlG~~v~q~Gs~v~~d~~rfDFs~~~~lt~edL~~IE~~vNeiI~~nlpV~~~ 678 (752)
T 2zze_A 599 GXIDWXRRIQHMRHHTGTHVLMGALVRVLGRHVWQAGSQLTTDWARLDISHYXRISEEELXEIEMLANRIVMEDRXVTWE 678 (752)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECSSCEEEEEECSSCCCHHHHHHHHHHHHHHHHHTCBEEEE
T ss_pred EEEeHHHHHHHHHHhHHHHHHHHHHHHHcCCceeeecCcccCCceEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCcccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCHHHHhcccCchhhc--CCCCCCCEEEEEEccccccccCCcCCcccCCceeeccCCccccccccCCcEEEeeee
Q 003915 711 EATLAEAKCINGLRAVF--GEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGQYVAIMCSHSWSLALNCL 784 (787)
Q Consensus 711 ~~~~~EA~~~~gl~~~f--gE~y~d~VRVV~Ig~~~~~~~~~~~~~~~~~~s~elCGGTHV~nT~eIg~ikil~~~ 784 (787)
+++++||+++.++ ++| +++|++.||||+|| ++|+++||||||+||++||.|||++..
T Consensus 679 ~~s~eEA~~~~~~-~lf~~ge~ygd~VRVV~IG----------------d~svelCGGTHV~nTgeIG~fKIls~s 737 (752)
T 2zze_A 679 WLPRTTAEQXYGF-RLYQGGVVPGREIRVVXIE----------------DWDVQACGGTHLPSTGLVGPIXILRTE 737 (752)
T ss_dssp EEEHHHHHHHHCG-GGCSSCCCCSSEEEEEEET----------------TTEEEECCSCCCSBGGGGCCEEEEEEE
T ss_pred ecCHHHHhhcchh-hhhcCCCCCCCeEEEEEEC----------------CceeCCCCCCccCCHhHccEEEEEEEE
Confidence 9999999997554 555 78898999999999 689999999999999999999999985
No 2
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=100.00 E-value=2.2e-184 Score=1601.07 Aligned_cols=610 Identities=27% Similarity=0.441 Sum_probs=555.7
Q ss_pred CCCCCChHHHHHHHHHhhhcCCCeEecCCCCccCCCCCcceecccccccccccc-CCCCCCCcccccccccccccccccC
Q 003915 54 QVVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFL-GTADPNTQLSKLTRACNTQKCIRAG 132 (787)
Q Consensus 54 ~~~~~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~dp~llf~nAGm~~fkp~fl-G~~~p~~~~~~~~r~~~~QkCiR~g 132 (787)
..++|+++|||++|++||++|||+++|||||||+||||||||||||+||||||+ |..+|+ +.|+|++|||||+
T Consensus 56 ~~~~~~~~eir~~f~~ff~~~gh~~~~s~~lvp~~dptllft~agm~~fkp~~~~g~~~p~-----~~~~~~~Q~ciR~- 129 (739)
T 2ztg_A 56 FKKPFELDEMREYYLNFFERRGHGRIERYPVVARWRTDIYLTIASIADFQPFVTSGVAPPP-----ANPLTISQPCIRL- 129 (739)
T ss_dssp SSSCCCHHHHHHHHHHHHHTTTCEECCCCCSBCTTCSSBSBCCSGGGGGTTTTTTSSSCCS-----SSSEEEEEEEECG-
T ss_pred cCCCCCHHHHHHHHHHHHHHCCCEEeCCcCcCCCCCCCceeeecChhhCcHhHhCCCCCCC-----CCCcccccccccC-
Confidence 446799999999999999999999999999999999999999999999999997 998885 4699999999998
Q ss_pred CCCCCCCCCCCCCCcchhhhhccccccc-----cccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHHHHH
Q 003915 133 GKHNDLDDVGKDTYHHTFFEMLGNWSFG-----DYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARD 207 (787)
Q Consensus 133 GkhnDld~VG~t~rHhTfFEMLGnfSFg-----dYfK~eAi~~awe~Lt~~lgl~~~rL~vT~~~~d~~~~l~~D~E~~~ 207 (787)
|||||||+|+||||||||||||||| ||||+|||+|||||| ++|||||+||. +
T Consensus 130 ---~D~envg~t~rH~tfFeMlgn~sFg~~~~~dYfK~eai~~~~e~l-~~~g~~~~~i~--~----------------- 186 (739)
T 2ztg_A 130 ---DDLDSVGRTGRHLTLFEMMAHHAFNYPGKEIYWKNETVAYCTELL-NELGVKKEDIV--Y----------------- 186 (739)
T ss_dssp ---GGGGGTTTSSSCCSEEEEEEEEEEEBTTBCSCCHHHHHHHHHHHH-HHHTCCGGGCE--E-----------------
T ss_pred ---cccccCCCCCcchhhhhccCccccCCCccccchHHHHHHHHHHHH-HHhCCCHHHee--e-----------------
Confidence 7999999999999999999999999 999999999999999 88999999882 1
Q ss_pred HHHhcCCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCceEEEeeeeccccccCCCCccc----
Q 003915 208 IWLKFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLK---- 283 (787)
Q Consensus 208 iW~~~~~~~rI~~~~~~dNfW~mG~~GpCGPCsEI~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmqy~r~~~g~l~---- 283 (787)
+||||+|| |||||||||||| | |||||+|||||||+++|++.
T Consensus 187 ----------------~dnfW~~g--Gp~Gpc~Ei~~d---g--------------~EiwnlVfmq~~r~~~g~~~~~~~ 231 (739)
T 2ztg_A 187 ----------------KEEPWAGG--GNAGPCLEAIVG---G--------------LEVATLVFMNLEEHPEGDIEIKGA 231 (739)
T ss_dssp ----------------EEEEEEET--TEEEEEEEEEET---T--------------EEEEEEEEEEEEECTTCCEEETTE
T ss_pred ----------------ccCcccCC--CCCCCeeEEEEC---C--------------EEeeeeeeEEeeecCCCceeecCc
Confidence 68999999 999999999997 2 99999999999999999998
Q ss_pred ---cCCCCccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCC----------------CCCCCCCCCCccccc
Q 003915 284 ---PLPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGAR----------------PYSGKVGADDADKVD 344 (787)
Q Consensus 284 ---~Lp~~~IDTGmGlERl~~vlqg~~snydtD~F~pli~~i~~~~~~~----------------~y~g~~~~~~~~~~~ 344 (787)
|||+|+||||||||||||+|||++||||| +|.|||++|++++|++ +|+|+++.++.++++
T Consensus 232 ~y~~l~~~~iDtG~GlER~~~~lqg~~s~yd~-~f~pii~~~~~~~g~~y~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~ 310 (739)
T 2ztg_A 232 RYRKMDNYIVDTGYGLERFVWASKGTPTVYDA-IFPEVVDTIIDNSNVSFNREDERVRRIVAESSKLAGIMGELRGERLN 310 (739)
T ss_dssp EEEEEEEEEEEEEEEHHHHHHHHHCCSSHHHH-HCHHHHHHHHHTSCCSSCTTCHHHHHHHHHHHHHHHHHTTCCTHHHH
T ss_pred cccCCCCCeEecCcCHHHHHHHHcCCCchHHh-hHHHHHHHHHHHhCCCccccccchhhhhhhhhhcccccCcccchhHH
Confidence 99999999999999999999999999999 9999999999999985 123334433312111
Q ss_pred ------------------------chhhhhhhhhhheeeeecCCCccCCCCCchHHHHHHHHHHHHHHhhhCCCcchhhh
Q 003915 345 ------------------------MAYRVVADHIRTLSFAIADGSCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNG 400 (787)
Q Consensus 345 ------------------------~~~rviaDH~R~~~f~i~DGv~Psn~grgYvlRrilRRa~r~~~~~lg~~~~fl~~ 400 (787)
.++||||||+||++|||+||++|||+|||||||||||||+|+| ++||++.| |++
T Consensus 311 ~~~~~~a~~~~~~~~~~~~~~~~~~~~rviaDH~R~~~f~i~DGv~PsN~grGYvlRrilRRa~r~~-~~lg~~~~-l~~ 388 (739)
T 2ztg_A 311 QLRKSVADTVGVSVEELEGIVVPLEKVYSLADHTRCILFMLGDGLVPSNAGAGYLARLMIRRSLRLA-EELELGLD-LYD 388 (739)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHHHHH-HHTTCSSC-HHH
T ss_pred HHHHHhhhhcccchhhhhhhccccceEEEEecHHHHHHHHhccCcccCCCCcchHHHHHHHHHHHHH-HHhCCCcc-HHH
Confidence 4788999999999999999999999999999999999999999 57999999 999
Q ss_pred HHHHHHHHhcCCChhhHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHhhhcCCCChhhHHHHH
Q 003915 401 LVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMA 480 (787)
Q Consensus 401 lv~~v~~~m~~~ypeL~~~~~~I~~ii~~EE~~F~~TL~~G~~~l~~~i~~~~~~~isg~~af~LydTyGfP~dlt~~ia 480 (787)
||++|++.|++ ||.++++.|++||+.||++|.+||++|+++|+++++++++ |||++||+||||||||+|||++||
T Consensus 389 lv~~~~~~m~~---el~~~~~~I~~vi~~EE~~F~~Tl~~G~~~l~~~~~~~~~--l~g~~af~LyDTyGfP~dlt~~ia 463 (739)
T 2ztg_A 389 LVEMHKKILGF---EFDVPLSTVQEILELEKERYRTTVSKGTRLVERLVERKKK--LEKDDLIELYDSHGIPVELAVGIA 463 (739)
T ss_dssp HHHHHHHHHCC---CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSB--CCHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCHHHHHHHHHhcCCCHHHHHHHH
Confidence 99999999999 9999999999999999999999999999999999998753 999999999999999999999999
Q ss_pred HHcCcccChh-hHHHHHHHHHHHhHhhhhcccCCccccchHHHHHHhhcCCCCcccCCCcc--cceeecEEEEEEEeCCe
Q 003915 481 EERGLLVDIE-GFNNAMDEARERSRSAQNKQAGGAIVMDADATAALHKRGVLATDDSFKFI--WFQDHKSVIKAIYTGSE 557 (787)
Q Consensus 481 ~e~gl~vD~~-~F~~~m~~~r~~sr~~~~~~~~~~~~~~~~~~~~l~~~~~~~T~~~~~Y~--y~~~~~akVlai~~~~~ 557 (787)
+|+|++||++ +|+++|++||++||++.. . .. .+. .+.++|+ +.+|+ |..+++|+|+++..
T Consensus 464 ~e~g~~vd~~~~F~~~m~~q~~~a~~~~~---~---~~------~~~-~~~~~T~-~l~Y~~~y~~~~~a~Vl~i~~--- 526 (739)
T 2ztg_A 464 AEKGAEVEMPKDIYAELAKRHSKAEKVQE---K---KI------TLQ-NEYPATE-KLYYDDPTLLEFEAEVIGVEG--- 526 (739)
T ss_dssp HHTTCBCCCCTTHHHHHHHTTSBCCCCCC---C---CC------CCS-SCCCCCE-ECTTTCTTCCEEEEEEEEEET---
T ss_pred HHcCCeeCCcccHHHHHHHHHHHHhhccc---c---ch------hhh-ccCCCce-eecccCCcccEEEEEEEEEEc---
Confidence 9999999999 899999999998876411 1 00 111 1245675 77787 44889999999974
Q ss_pred eeeeecCCCeEEEEEccceeeeCCCCccCcceEEEecCceEEEEeEEEECCEEEEEEEeecCCCcC-CCCCEEEEEEehh
Q 003915 558 FIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLTEGAGRF-SVGEEVICKVDYD 636 (787)
Q Consensus 558 ~v~~~~~~~~~~VvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~k~~g~ivH~~~~~~~~~~l-~~G~~V~~~VD~e 636 (787)
.+||||+|||||||||||+|+|+|..++..+.|.+|++.+|.++|.+. +.+ ++|++|.++|||+
T Consensus 527 ----------~~VVLD~TpFYpEgGGQ~~D~G~I~~~g~~~~V~dv~k~~g~ivH~~~-----~~~~~~Gd~V~~~VD~~ 591 (739)
T 2ztg_A 527 ----------DFVILNRSAFYPESGGQDNDVGYLIANGGKFEVVDVLEADGVVLHVVK-----GAKPEVGTKVKGVIDSD 591 (739)
T ss_dssp ----------TEEEESEECCCCSBTTBCCCCEEEEETTEEEEECEEEEETTEEEEECC-----SSCCCTTCEEEEEECHH
T ss_pred ----------CEEEEeCCCCCCCCCCCCCCEEEEEECCEEEEEEEEEEECCEEEEEEc-----ccCCCCCCEEEEEEcHH
Confidence 369999999999999999999999887778999999999999999875 344 6999999999999
Q ss_pred chhhhcccccHHHHHHHHHHHHhCCcceeeeecccCCceEEEeeCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEcCHHH
Q 003915 637 RRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAE 716 (787)
Q Consensus 637 rR~~~~r~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~RfDFs~~~~lt~eeL~~IE~~vNe~I~~n~pV~~~~~~~~E 716 (787)
||+.+|++|||+|||++||+++||.|++|+||+++++++||||+++.++|++++++||+.||++|++|+||++.+++++|
T Consensus 592 rR~~~m~~HTAtHLL~~ALr~vlG~~v~q~GS~v~~d~~r~DF~~~~~lT~edL~~IE~~vNeiI~~nlpV~~~~~s~eE 671 (739)
T 2ztg_A 592 VRWRHMRHHSATHVLLYSLQKVLGNHVWQAGARKEFSKARLDVTHFRRPSEEEIKEIEMLANREILANKPIKWEWMDRIE 671 (739)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTCCEEECCSCCSSCEEEEECSSCCCHHHHHHHHHHHHHHHHTTCBEEEEEEEHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcEEecCcEEcCCcEEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHH
Confidence 99999999999999999999999999999999999999999999989999999999999999999999999999999999
Q ss_pred HhcccCchhhc-CCCCCCCEEEEEEccccccccCCcCCcccCCceeeccCCccccccccCCcEEEeeee
Q 003915 717 AKCINGLRAVF-GEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGQYVAIMCSHSWSLALNCL 784 (787)
Q Consensus 717 A~~~~gl~~~f-gE~y~d~VRVV~Ig~~~~~~~~~~~~~~~~~~s~elCGGTHV~nT~eIg~ikil~~~ 784 (787)
|+++.+++.+. +++|.+.||||+|| + +.++||||||+||++||.|+|++..
T Consensus 672 A~~~~~l~L~~~~~~~~d~VRVV~IG----------------d-~~elCGGTHV~nTgeIg~fkIls~s 723 (739)
T 2ztg_A 672 AERKFGFRLYQGGVPPGRKIRVVQVG----------------D-DVQACGGTHCRSTGEIGMLKILKVE 723 (739)
T ss_dssp HHHHHCGGGGTTCCCCSSEEEEEEET----------------T-EEEECCSCCCSBGGGGCCEEEEEEE
T ss_pred HHHhCCHhhhcCCCCCCCeEEEEEEC----------------C-eeeCcCCcCcccHhHcCcEEEEEEe
Confidence 99986554443 57777899999998 4 8999999999999999999999875
No 3
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A*
Probab=100.00 E-value=5.9e-176 Score=1433.04 Aligned_cols=424 Identities=50% Similarity=0.891 Sum_probs=404.6
Q ss_pred CChHHHHHHHHHhhhcCCCeEecCCCCccCCCCCcceeccccccccccccCCCCCCCcccccccccccccccccCCCCCC
Q 003915 58 WPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHND 137 (787)
Q Consensus 58 ~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~dp~llf~nAGm~~fkp~flG~~~p~~~~~~~~r~~~~QkCiR~gGkhnD 137 (787)
++++|||++||+||++|||++||||||||+||||||||||||+||||||+|+++|+ ++|+|+|||||||||||||
T Consensus 2 ~~~~eiR~~Fl~FF~~kgH~~v~Ssslvp~~DptLLftnAGM~~FKp~flG~~~p~-----~~r~~~sQkCiR~gGKHnD 76 (441)
T 3hy0_A 2 KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRN-----YSRATTSQRCVRAGGKHND 76 (441)
T ss_dssp CCHHHHHHHHHHHHHHTTCEECCCCCSSCSSCTTCSSCCSGGGGGHHHHHTSSCCS-----CSEEEEEEEEECEETTEEC
T ss_pred CCHHHHHHHHHHHHHhCCCeEcCCCCccCCCCCCceeecccchhhhhhhcCCCCCC-----CCCccccccceecCCCCCC
Confidence 68999999999999999999999999999999999999999999999999999875 6899999999999999999
Q ss_pred CCCCCCCCCcchhhhhccccccccccHHHHHHHHHHHcc--cccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhc--C
Q 003915 138 LDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLT--KVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--L 213 (787)
Q Consensus 138 ld~VG~t~rHhTfFEMLGnfSFgdYfK~eAi~~awe~Lt--~~lgl~~~rL~vT~~~~d~~~~l~~D~E~~~iW~~~--~ 213 (787)
|||||+|+|||||||||||||||||||+|||+||||||| ++|||||+|||||||++ |+||++||++. |
T Consensus 77 lenVG~t~rHhTfFEMLGNfSFGDYFK~eAI~~Awe~LT~~~~lgl~~erL~vTvf~~--------D~Ea~~iW~~~~Gv 148 (441)
T 3hy0_A 77 LENVGYTARHHTFFEMLGNFSFGDYFKLDAILFAWLLLTSEKWFALPKERLWVTVYES--------DDEAYEIWEKEVGI 148 (441)
T ss_dssp GGGBTTBSSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHCTTTTCCCGGGEEEEEETT--------CHHHHHHHHHTTCC
T ss_pred HHhhCCCCccccceeeccccccchhhHHHHHHHHHHHhCCCCccCCCHHHeEEEEeCC--------CHHHHHHHHHccCC
Confidence 999999999999999999999999999999999999999 67999999999999985 89999999995 9
Q ss_pred CCCCcccCC-------CCCCcccCCCCCCCcCceeEEeecCCCCC--CCCCCCCCCCceEEEeeeeccccccCCCCcccc
Q 003915 214 PASRVLPFG-------CKDNFWEMGDTGPCGPCSEIHYDRTGNRD--AASLVNNDDPTCIEIWNIVFIQFNRESDGSLKP 284 (787)
Q Consensus 214 ~~~rI~~~~-------~~dNfW~mG~~GpCGPCsEI~yd~~~~~~--~~~~~~~~~~r~lEiwNlVFmqy~r~~~g~l~~ 284 (787)
|++||+++| .+||||+||+|||||||||||||+++... ..+.+++||+|||||||||||||||+++|+|.|
T Consensus 149 p~~rI~~~g~~~~~~y~~dNFW~mG~tGPCGPCsEI~yD~g~~~~~g~~~~~~~d~~r~lEIWNlVFmQy~r~~~g~l~p 228 (441)
T 3hy0_A 149 PRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEP 228 (441)
T ss_dssp CGGGEEEECSTTSBTTBBTTEEESSSSEEEEEEEEEEEECCTTSCCCCTTSTTTTSSSEEEEEEEEEEEEEECTTSCEEE
T ss_pred CHHHeeecCccccccccccCchhcCCCcCCcCCeeEEEecCcccCCCCCCCCCCCCCCeEEEeeeeeeeeeecCCCcccc
Confidence 999999999 89999999999999999999999964221 122468899999999999999999999999999
Q ss_pred CCCCccccCchHHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCCcccccchhhhhhhhhhheeeeecCC
Q 003915 285 LPAKHVDTGLGFERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADG 364 (787)
Q Consensus 285 Lp~~~IDTGmGlERl~~vlqg~~snydtD~F~pli~~i~~~~~~~~y~g~~~~~~~~~~~~~~rviaDH~R~~~f~i~DG 364 (787)
||+||||||||||||||||||++||||||+|.|||+++++++|.. | ..++|+||||||+||++|||+||
T Consensus 229 Lp~k~IDTGmGLERla~vlQg~~snYdtDlf~pii~~i~~~~g~~-~----------~~~~s~rvIADH~R~~~f~iaDG 297 (441)
T 3hy0_A 229 LPKPSVDTAMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGAT-D----------LSNKSLRVIADHIRSCAFLIADG 297 (441)
T ss_dssp EEEEEEEEEEEHHHHHHHHTTCSSGGGSHHHHHHHHHHHHHHTCC-C----------TTCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCceecCCCHHHHHHHHcCCCccccchhHHHHHHHHHHHhCCC-c----------cccceeEEecchHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999975 3 13679999999999999999999
Q ss_pred CccCCCCCchHHHHHHHHHHHHHHhhhCCCcchhhhHHHHHHHHhcCCChhhHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003915 365 SCPGNEGREYVLRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEK 444 (787)
Q Consensus 365 v~Psn~grgYvlRrilRRa~r~~~~~lg~~~~fl~~lv~~v~~~m~~~ypeL~~~~~~I~~ii~~EE~~F~~TL~~G~~~ 444 (787)
++|||+|||||||||||||+|++ ++||++.+||++||++|++.|++.||||.++++.|++||+.||++|.+||++|+++
T Consensus 298 v~PsNeGrGYVLRRilRRAvr~g-~~Lg~~~~fl~~Lv~~v~~~m~~~yPeL~~~~~~I~~vi~~EE~~F~~TL~~G~~~ 376 (441)
T 3hy0_A 298 VMPSNENRGYVLRRIIRRAVRHG-NMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLAL 376 (441)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHH-HHHTCCSCCGGGGHHHHHHHHGGGGHHHHHTHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred cccCCCCcchhHHHHHHHHHHHH-HHhCCCCccHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 47999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCChHHHHHhhhcCCCChhhHHHHHHHcCcccChhhHHHHHHHHHHHhHhh
Q 003915 445 FKKAAQDVQGKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSA 506 (787)
Q Consensus 445 l~~~i~~~~~~~isg~~af~LydTyGfP~dlt~~ia~e~gl~vD~~~F~~~m~~~r~~sr~~ 506 (787)
|++.++++++++|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||++
T Consensus 377 l~~~~~~~~~~~l~g~~af~LyDTyGfP~dLt~eia~e~g~~vD~~~F~~~m~~qr~rar~~ 438 (441)
T 3hy0_A 377 LDEELAKLSGDTLDGETAFRLYDTYGFPVDLTADVCRERNIKVDEAGFEAAMEEQRRRAREA 438 (441)
T ss_dssp HHHHHHSCCSSEECHHHHHHHHHHHCCCHHHHHHHHHTTTCEECHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHhhhhcCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHhc
Confidence 99999877556899999999999999999999999999999999999999999999999986
No 4
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=100.00 E-value=1.6e-175 Score=1437.28 Aligned_cols=423 Identities=48% Similarity=0.895 Sum_probs=404.4
Q ss_pred CChHHHHHHHHHhhhcCCCeEecCCCCccCCCCCcceeccccccccccccCCCCCCCcccccccccccccccccCCCCCC
Q 003915 58 WPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPIFLGTADPNTQLSKLTRACNTQKCIRAGGKHND 137 (787)
Q Consensus 58 ~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~dp~llf~nAGm~~fkp~flG~~~p~~~~~~~~r~~~~QkCiR~gGkhnD 137 (787)
|+++|||++||+||++|||++||||||||+||||||||||||+||||||+|.++|+ ++|+|+||||||+||||||
T Consensus 3 ~~~~eiR~~Fl~FF~~kgH~~vpSsslvp~~DptLLftnAGM~~FKp~flG~~~p~-----~~r~t~sQkCiRag~~hND 77 (465)
T 1yfs_A 3 LSAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRP-----YKRATSCQKCLRVSGKHND 77 (465)
T ss_dssp CCHHHHHHHHHHHHHTTTCEECCCCCSSCTTCTTCSSCCSTTSTTHHHHHTSSCCS-----CSEEEEEEEEECEETTEEC
T ss_pred CCHHHHHHHHHHHHHhCCCEEecCCCcccCCCCCcceeccchhhhhHHhcCCCCCC-----CCceeccccccccCCCccc
Confidence 89999999999999999999999999999999999999999999999999999886 5799999999999999999
Q ss_pred CCCCCCCCCcchhhhhccccccccccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhc--CCC
Q 003915 138 LDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKF--LPA 215 (787)
Q Consensus 138 ld~VG~t~rHhTfFEMLGnfSFgdYfK~eAi~~awe~Lt~~lgl~~~rL~vT~~~~d~~~~l~~D~E~~~iW~~~--~~~ 215 (787)
|||||+|+|||||||||||||||||||+|||+|||||||++|||||+|||||||++ |+||++||++. ||+
T Consensus 78 lenVG~t~rHhTfFEMLGNfSFGDYFK~eAI~~AwE~LT~~lgl~~~rL~vTv~~~--------D~Ea~~iW~~~~G~p~ 149 (465)
T 1yfs_A 78 LEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPKEKLYVSVYKD--------DEEAYRIWNEHIGIPS 149 (465)
T ss_dssp GGGBTTBSSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHHTSCCCGGGEEEEEETT--------CHHHHHHHHTTTCCCG
T ss_pred HhhcCCCCCccchheeccccchhhhhHHHHHHHHHHHHHhhcCCCHHHeEEEEeCC--------CHHHHHHHHHhcCCCH
Confidence 99999999999999999999999999999999999999999999999999999985 89999999996 999
Q ss_pred CCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCceEEEeeeeccccccCCCCccccCCCCccccCch
Q 003915 216 SRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLG 295 (787)
Q Consensus 216 ~rI~~~~~~dNfW~mG~~GpCGPCsEI~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmqy~r~~~g~l~~Lp~~~IDTGmG 295 (787)
+||+++|.+||||+||++||||||||||||++++++ +|+|||||||||||||||+++|+|.|||+||||||||
T Consensus 150 ~rI~~~g~~dNFW~mG~tGPCGPCsEI~yD~g~~~~-------~~~r~lEIWNlVFmQy~r~~~g~l~pLp~k~IDTGmG 222 (465)
T 1yfs_A 150 ERIWRLGEEDNFWQMGDVGPCGPSSEIYVDRGEEYE-------GDERYLEIWNLVFMQYNRDENGVLTPLPHPNIDTGMG 222 (465)
T ss_dssp GGEEEECHHHHEEESSSSEEEEEEEEEEEECCTTSC-------HHHHEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred HHeeeCCCcCCcccCCCCcCCCCCeEEEEccCCCCC-------CCCCEEEeeeeeeeEEEecCCCccccCCCCceecCcC
Confidence 999999999999999999999999999999987643 2789999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCccccccHHHHHHHHHHhCCCCCCCCCCCCCcccccchhhhhhhhhhheeeeecCCCccCCCCCchH
Q 003915 296 FERLTSILQNKMSNYDTDVFMPIFDAIQQATGARPYSGKVGADDADKVDMAYRVVADHIRTLSFAIADGSCPGNEGREYV 375 (787)
Q Consensus 296 lERl~~vlqg~~snydtD~F~pli~~i~~~~~~~~y~g~~~~~~~~~~~~~~rviaDH~R~~~f~i~DGv~Psn~grgYv 375 (787)
||||+|||||++||||||+|.|||++|++++|++ |. .+ +..|+|+||||||+||++|||+||++|||+|||||
T Consensus 223 LERla~vlQg~~snYdtDlf~pii~~i~~~~g~~-Y~----~~--~~~d~s~rvIADH~R~~~f~I~DGv~PsN~GrGYV 295 (465)
T 1yfs_A 223 LERIASVLQGKNSNFEIDIIFPLIQFGEEVSGKK-YG----EK--FETDVALRVIADHLRAITFAISDGVIPSNEGRGYV 295 (465)
T ss_dssp HHHHHHHHTTCSSGGGSTTTHHHHHHHHHHHCCC-TT----SC--HHHHHHHHHHHHHHHHHHHHHHTTCCCCSBHHHHH
T ss_pred HHHHHHHHcCCCccchhhhHHHHHHHHHHHhCCC-CC----CC--cccceeEEEEcchhhhhhhhhccccccCCCCcchH
Confidence 9999999999999999999999999999999985 73 12 34678999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhCCCcchhhhHHHHHHHHhcCCChhhHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Q 003915 376 LRRILRRAVRYGSEVLKAQDGFFNGLVNIVVKVMGDVFPELKQREAHIREIIAAEEASFGKTLLKGIEKFKKAAQDVQ-- 453 (787)
Q Consensus 376 lRrilRRa~r~~~~~lg~~~~fl~~lv~~v~~~m~~~ypeL~~~~~~I~~ii~~EE~~F~~TL~~G~~~l~~~i~~~~-- 453 (787)
||||||||+|+|+ +||++.|||++||++|++.|++.||||.++++.|++||+.||++|.+||++|+++|++++++++
T Consensus 296 LRRilRRavr~g~-~Lg~~~~fl~~Lv~~v~~~m~~~yPel~~~~~~I~~vi~~EE~~F~~TL~~G~~~l~~~~~~~~~~ 374 (465)
T 1yfs_A 296 IRRILRRAMRFGY-KLGIENPFLYKGVDLVVDIMKEPYPELELSREFVKGIVKGEEKRFIKTLKAGMEYIQEVIQKALEE 374 (465)
T ss_dssp HHHHHHHHHHHHH-HTTCCSCCHHHHHHHHHHHHTTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH-HhCCCchhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999995 6999999999999999999999999999999999999999999999999999999999998874
Q ss_pred -CCCCChHHHHHhhhcCCCChhhHHHHHHHcCcccChhhHHHHHHHHHHHhHhhhh
Q 003915 454 -GKVLSGQDAFILWDTYGFPLDLTQLMAEERGLLVDIEGFNNAMDEARERSRSAQN 508 (787)
Q Consensus 454 -~~~isg~~af~LydTyGfP~dlt~~ia~e~gl~vD~~~F~~~m~~~r~~sr~~~~ 508 (787)
+++|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||++++
T Consensus 375 ~~~~l~G~~af~LyDTyGfP~dLt~eia~e~g~~vD~~gF~~~m~~q~~rar~~~~ 430 (465)
T 1yfs_A 375 GRKTLSGKEVFTAYDTYGFPVDLIDEIAREKGLGIDLEGFQCELEEQRERARKHFK 430 (465)
T ss_dssp TCCEECHHHHHHHHHTSCCCHHHHHHHHHTTTCEECHHHHHHHHHHHHHTTTTC--
T ss_pred CCCcCCHHHHHhhhhccCCCHHHHHHHHHHcCCeeCHHHHHHHHHHHHHHHHhhhh
Confidence 2369999999999999999999999999999999999999999999999998754
No 5
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens}
Probab=100.00 E-value=7.4e-52 Score=431.89 Aligned_cols=208 Identities=20% Similarity=0.211 Sum_probs=191.9
Q ss_pred CcccceeecEEEEEEEeCCeeeeeecCCCeEEEEEccceeeeCCCCccCcceEEEecCceEEEEeEEEECCEEEEEEEee
Q 003915 538 KFIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIYGGFVIHIGSLT 617 (787)
Q Consensus 538 ~Y~y~~~~~akVlai~~~~~~v~~~~~~~~~~VvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~k~~g~ivH~~~~~ 617 (787)
...|..+++|+|+++..+ ++.+.|+||+|||||||||||+|+|+| ..++|.+|++.+|.++|++.
T Consensus 9 ~d~y~~~~~a~V~~~~~~---------~~~~~vvLd~T~FYpegGGQ~~D~G~i----~~~~V~~v~~~~g~i~H~~~-- 73 (241)
T 3kew_A 9 EDQYIKEFKGEIIEVKEI---------DGKFHVLLDQTAFFPGGGGQMGDLGLI----DGIKVLDVYEEEGKVYHVLE-- 73 (241)
T ss_dssp TCTTCCEEEECEEEEEEE---------TTEEEEEESEECCCCCBTTBCCCCEEE----TTEEEEEEEEETTEEEEEES--
T ss_pred hCcccceeEEEEEEEEec---------CCeEEEEEeCCcccCCCCCCCCCEEEE----eeEEEEEEEEeCCEEEEEEC--
Confidence 334788999999999863 345889999999999999999999999 35899999999999999974
Q ss_pred cCCCcCCCCCEEEEEEehhchhhhcccccHHHHHHHHHHHHhCCcceeeeecccCCceEEEeeCCCCCCHHHHHHHHHHH
Q 003915 618 EGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIV 697 (787)
Q Consensus 618 ~~~~~l~~G~~V~~~VD~erR~~~~r~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~RfDFs~~~~lt~eeL~~IE~~v 697 (787)
+.+++|++|.+.|||+||+++|++|||+|||++||+++||.+ |+|+++.++++||||+ +++|++++++||+.|
T Consensus 74 ---~~l~~g~~V~~~vD~~rR~~~~~~HTa~HLL~~al~~~~g~~--~~G~~v~~~~~r~Df~--~~lt~e~l~~IE~~v 146 (241)
T 3kew_A 74 ---KEPKKLKNLQCELDWERRFDGMQQHLGQHLLSGCFYDLFGAN--TCGFHLGKEISTVDIV--GFLDEKTIREAEKEA 146 (241)
T ss_dssp ---SCCCCCSSEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCC--EEEEEECSSCEEEEEE--SCCCHHHHHHHHHHH
T ss_pred ---CcCCCCCEEEEEECHHHhhhHHHHHHHHHHHHHHHHHHCCCC--eEeccccCCeEEEEEC--CCCCHHHHHHHHHHH
Confidence 678899999999999999999999999999999999999986 6999999999999999 689999999999999
Q ss_pred HHHHHcCCCEEEEEcCHHHHhcccCchhhcCCCCCCCEEEEEEccccccccCCcCCcccCCceeeccCCccccccccCCc
Q 003915 698 NEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGQYVAIMCSHSW 777 (787)
Q Consensus 698 Ne~I~~n~pV~~~~~~~~EA~~~~gl~~~fgE~y~d~VRVV~Ig~~~~~~~~~~~~~~~~~~s~elCGGTHV~nT~eIg~ 777 (787)
|++|++|+||++.+++++||+++ +++++ .++|++.||||+|| ++|.++||||||+||++||.
T Consensus 147 n~~I~~~~pV~~~~~~~~eA~~~-~~~~~-~e~~~~~VRvv~ig----------------~~~~~~CgGtHV~~TgeIg~ 208 (241)
T 3kew_A 147 NRLIFENLEVKSYAPSKKELKKV-KTRRA-LPKTDEEIRIVEIV----------------GLDLNACCGVHPRNTRDLQV 208 (241)
T ss_dssp HHHHHHTCBEEEECCCTTTTTTC-CCSSC-CCCCSSCCCEEEET----------------TTEEEECCSCCCSBSGGGCC
T ss_pred HHHHHcCCCEEEEEcCHHHHHhc-Chhhc-CCccCCcEEEEEEC----------------CeEEEcCCCCCcCCHhhcCC
Confidence 99999999999999999999996 67775 67899999999999 68999999999999999999
Q ss_pred EEEeeeee
Q 003915 778 SLALNCLL 785 (787)
Q Consensus 778 ikil~~~~ 785 (787)
|||++..-
T Consensus 209 fkI~~~~~ 216 (241)
T 3kew_A 209 IKIRRWEK 216 (241)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEec
Confidence 99999863
No 6
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2
Probab=100.00 E-value=3.2e-48 Score=398.41 Aligned_cols=190 Identities=28% Similarity=0.313 Sum_probs=173.2
Q ss_pred cccceeecEEEEEEEeCCeeeeeecCCCeEEEEEccceeeeCCCCccCcceEEEecCceEEEEeEEEE-CCEEEEEEEee
Q 003915 539 FIWFQDHKSVIKAIYTGSEFIESVVPGNEVGIVLASSSFYAEQGGQIFDEGFIEGLFGSFYVRNVQIY-GGFVIHIGSLT 617 (787)
Q Consensus 539 Y~y~~~~~akVlai~~~~~~v~~~~~~~~~~VvLD~T~FYpegGGQ~~D~G~I~~~~~~~~V~dv~k~-~g~ivH~~~~~ 617 (787)
..|..+++|+|+++.. .+|+||+|||||||||||+|+|+|. + ++|.+|++. +|.++|.+..
T Consensus 12 d~y~~~~~a~V~~~~~-------------~~vvld~T~Fype~GGQ~~D~G~i~---~-~~V~~v~~~~~~~i~H~~~~- 73 (216)
T 2e1b_A 12 DAYLKEAKGRVLEIRD-------------NAILLDQTIFYPTGGGQPHDRGTIN---G-VEVLDVYKDEEGNVWHVVKE- 73 (216)
T ss_dssp CTTCCEEEECBCCCCS-------------SCCCBSCCCSCCCCTTCCCCCEEET---T-EEEEEEECCTTCCCEEEESC-
T ss_pred CcccceeeEEEEEEeC-------------CEEEEeCCCccCCCCCCCCCEEEEc---c-EEEEEEEECcCCEEEEEEcc-
Confidence 3478899999998831 1599999999999999999999994 3 999999997 8999999863
Q ss_pred cCCCcCCCCCEEEEEEehhchhhhcccccHHHHHHHHHHHHhCCc-ceeeeecccCCceEEEeeCCCCCCHHHHHHHHHH
Q 003915 618 EGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDH-VDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESI 696 (787)
Q Consensus 618 ~~~~~l~~G~~V~~~VD~erR~~~~r~HTAtHLL~aALr~vlG~~-v~q~Gs~v~~d~~RfDFs~~~~lt~eeL~~IE~~ 696 (787)
. +.+++|++|.+.|||+||+.+|++|||+|||++||+++||.+ +.+.|++++|+++||||+++++++++ +++||+.
T Consensus 74 ~--~~l~~g~~v~~~vD~~rR~~~~~~HTA~HlL~~Al~~~~g~~~~~~~g~~v~~~~~r~Df~~~~~lt~e-l~~IE~~ 150 (216)
T 2e1b_A 74 P--EKFKVGDEVELKIDWDYRYKLMRIHTGLHLLEHVLNEVLGEGNWQLVGSGMSVEKGRYDIAYPENLNKY-KEQIISL 150 (216)
T ss_dssp G--GGCCSSSCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCEEEECCBCSSEEEEEEECSSCGGGG-HHHHHHH
T ss_pred C--CCcCCCCEEEEEECHHHHHHHHHHhHHHHHHHHHHHHHcCCccceeeeeeEcCCcEEEEEeCCCCCCHH-HHHHHHH
Confidence 3 678999999999999999999999999999999999999984 56789999999999999998889987 9999999
Q ss_pred HHHHHHcCCCEEEEEcCHHHHhcccCchhhcCCCCCCCEEEEEEccccccccCCcCCcccCCceeeccCCccccccccCC
Q 003915 697 VNEQIKAELDVFSKEATLAEAKCINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAELCGGQYVAIMCSHS 776 (787)
Q Consensus 697 vNe~I~~n~pV~~~~~~~~EA~~~~gl~~~fgE~y~d~VRVV~Ig~~~~~~~~~~~~~~~~~~s~elCGGTHV~nT~eIg 776 (787)
||++|++|+||++.++++ ||||+|| ++|.++||||||+||++||
T Consensus 151 vn~~I~~~~pv~~~~~~~--------------------vRvv~ig----------------~~~~~~CgGtHV~~TgeIg 194 (216)
T 2e1b_A 151 FNKYVDEGGEVKIWWEGD--------------------RRYTQIR----------------DFEVIPCGGTHVKDIKEIG 194 (216)
T ss_dssp HHHHHHHCCBEEEEESSS--------------------CEEEEET----------------TSCEECCCSCCCSBGGGTC
T ss_pred HHHHHhcCCCEEEEEcCC--------------------EEEEEEC----------------CEEEECCCCCCcccHhhCc
Confidence 999999999999988765 7999998 6899999999999999999
Q ss_pred cEEEeeeee
Q 003915 777 WSLALNCLL 785 (787)
Q Consensus 777 ~ikil~~~~ 785 (787)
.|||+++.-
T Consensus 195 ~fkI~~~~~ 203 (216)
T 2e1b_A 195 HIKKLKRSS 203 (216)
T ss_dssp CEEEEEEEE
T ss_pred eEEEEEEeE
Confidence 999999764
No 7
>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A
Probab=99.93 E-value=1.5e-25 Score=218.51 Aligned_cols=130 Identities=19% Similarity=0.145 Sum_probs=110.7
Q ss_pred hhcccccHHHHHHHHHHHHhCCcceeeee-cccCCceEEEeeCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEcCHHHHh
Q 003915 640 LIAPNHTCTHMLNFALREVLGDHVDQKGS-VVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAK 718 (787)
Q Consensus 640 ~~~r~HTAtHLL~aALr~vlG~~v~q~Gs-~v~~d~~RfDFs~~~~lt~eeL~~IE~~vNe~I~~n~pV~~~~~~~~EA~ 718 (787)
..|++|||+|||++|+++++|.++.++++ .+.++..|+||+...++|++++++||+.||++|++|+||...+++++||+
T Consensus 4 ~~~~~HSa~HlL~~Al~~~~~~~~~~~~~~~i~~~~~~~~~d~~~~~t~e~l~~IE~~~n~~I~~~~pi~~~~~~~~eA~ 83 (157)
T 1v4p_A 4 IEVRTHSALHVVKGAVVKVLGSEAKWTYSTYVKGNKGVLIVKFDRKPSDEEIREIERLANEKVKENAPIKIYELPREEAE 83 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGCCEEEEEEETTEEEEEEECSSCCCHHHHHHHHHHHHHHHHHTCBCEEEEEEHHHHH
T ss_pred hHHHhHHHHHHHHHHHHHHhCCCcEEecCceecCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHH
Confidence 46899999999999999999966666665 66666778888777789999999999999999999999999999999999
Q ss_pred cccCchhhcCCCCC---CCEEEEEEccccccccCCcCCcccCCceeeccCCccccccccCCcEEEeeeee
Q 003915 719 CINGLRAVFGEVYP---DPVRVVAIGRKVEDLLADPENKEWLSISAELCGGQYVAIMCSHSWSLALNCLL 785 (787)
Q Consensus 719 ~~~gl~~~fgE~y~---d~VRVV~Ig~~~~~~~~~~~~~~~~~~s~elCGGTHV~nT~eIg~ikil~~~~ 785 (787)
++++...+..+.+| +.||||+|| ++|.++||||||+||++||.|+|++++.
T Consensus 84 ~~f~~~~~~~~~~~~~~~~vrv~~ig----------------~~~~~~C~GtHv~~Tg~I~~fki~~~~~ 137 (157)
T 1v4p_A 84 KMFGEDMYDLFPVPEDVRILKVVVIE----------------DWNVNACNKEHTKTTGEIGPIKIRKVRF 137 (157)
T ss_dssp HHHGGGGSCSSCCCTTCCEEEEEEET----------------TTEEEECCSCCCSBGGGTCCEEEEEEEE
T ss_pred HhhCccccccccCCCCCCeEEEEEEC----------------CeeEeCCCCCccCChhhcceEEEEEEEe
Confidence 98665322222334 369999999 6899999999999999999999998863
No 8
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=99.90 E-value=2e-23 Score=215.03 Aligned_cols=154 Identities=16% Similarity=0.242 Sum_probs=126.3
Q ss_pred EECCEEEEEEEeecCCCcCCCCCEEEEEEehhchh-hhcccccHHHHHHHHHHHHhCC-cceeeeecccCCceEEEeeCC
Q 003915 605 IYGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRK-LIAPNHTCTHMLNFALREVLGD-HVDQKGSVVLPEKLRFDFSHG 682 (787)
Q Consensus 605 k~~g~ivH~~~~~~~~~~l~~G~~V~~~VD~erR~-~~~r~HTAtHLL~aALr~vlG~-~v~q~Gs~v~~d~~RfDFs~~ 682 (787)
+.+|.+++. . ..+..|+.|. .|+++.+. ..|++|||+|||++|++++||. ++.+ | +..++++|+||++.
T Consensus 39 kvNg~l~dL----~--~~l~~~~~ve-~it~~~~~g~~~~~HS~~HlL~~A~~~~~~~~~~~~-g-~~~~~g~y~d~~~~ 109 (224)
T 1tke_A 39 RVNGELVDA----C--DLIENDAQLS-IITAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAI-G-PVIDNGFYYDVDLD 109 (224)
T ss_dssp EETTEEEET----T--CCBCSCEEEE-EECTTSHHHHHHHHHHHHHHHHHHHHHHSTTCEECC-C-CEETTEEEEEEECS
T ss_pred EECCEEecc----c--eEcCCCCeEE-EEecCchhHHHHHHHHHHHHHHHHHHHHCCCcEEEE-C-CccCCeEEEEEeCC
Confidence 357877763 2 5677788777 47877664 7899999999999999999974 4433 4 55589999999988
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCCEEEEEcCHHHHhcccCc------hhhcCC-C-CCCCEEEEEEccccccccCCcCCc
Q 003915 683 KPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGL------RAVFGE-V-YPDPVRVVAIGRKVEDLLADPENK 754 (787)
Q Consensus 683 ~~lt~eeL~~IE~~vNe~I~~n~pV~~~~~~~~EA~~~~gl------~~~fgE-~-y~d~VRVV~Ig~~~~~~~~~~~~~ 754 (787)
.++|++++++||+.||++|++|+||+..+++++||+++... ..++.+ . +.+.|||+++|
T Consensus 110 ~~~t~edl~~IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~~~~~~k~~l~~~~~~~~~~v~vy~~g------------- 176 (224)
T 1tke_A 110 RTLTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHE------------- 176 (224)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCBCEEEECCHHHHHHHHHHTTCHHHHHHHHHHSCTTCCCEEEEET-------------
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCCEEEEEecHHHHHHHHHHcCCchHHHHhccccCCCCeeEEEEeC-------------
Confidence 89999999999999999999999999999999999986321 233333 3 45689999998
Q ss_pred ccCCceeeccCCccccccccCCcEEEeeee
Q 003915 755 EWLSISAELCGGQYVAIMCSHSWSLALNCL 784 (787)
Q Consensus 755 ~~~~~s~elCGGTHV~nT~eIg~ikil~~~ 784 (787)
++ .++||||||+||++||.|+|++..
T Consensus 177 ---~~-~dlC~G~Hv~~Tg~i~~fkl~~~~ 202 (224)
T 1tke_A 177 ---EY-VDMCRGPHVPNMRFCHHFKLMKTA 202 (224)
T ss_dssp ---TE-EEEESCCCCSBGGGCCCEEEEEEE
T ss_pred ---CE-EEECCCcCCCcCcccceEEEEEec
Confidence 44 799999999999999999999874
No 9
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=99.84 E-value=2.6e-21 Score=227.43 Aligned_cols=155 Identities=15% Similarity=0.264 Sum_probs=126.9
Q ss_pred ECCEEEEEEEeecCCCcCCCCCEEEEEEehhchhhhcccccHHHHHHHHHHHHhCCcceeeeecccCCceEEEeeCCCCC
Q 003915 606 YGGFVIHIGSLTEGAGRFSVGEEVICKVDYDRRKLIAPNHTCTHMLNFALREVLGDHVDQKGSVVLPEKLRFDFSHGKPV 685 (787)
Q Consensus 606 ~~g~ivH~~~~~~~~~~l~~G~~V~~~VD~erR~~~~r~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~RfDFs~~~~l 685 (787)
.+|.+++. . ..+..+.+|...-....+-..+++|||+|||++|+++++|.+..+.|+.+ ++++|+||++..++
T Consensus 42 vng~~~dl----~--~~l~~d~~v~~~~~~~~~g~~~~~HSa~HlL~~A~~~~~~~~~~~~g~~~-~~g~~~Df~~~~~~ 114 (645)
T 1nyr_A 42 FNGQLVDL----T--KPLETDGSIEIVTPGSEEALEVLRHSTAHLMAHAIKRLYGNVKFGVGPVI-EGGFYYDFDIDQNI 114 (645)
T ss_dssp ETTEEECT----T--SCCCSCBCCCEECTTSHHHHHHHHHHHHHHHHHHHHHHSSSCEECCCCEE-TTEEEEEEECSSCC
T ss_pred ECCEEEeC----C--cccCCCCeEEEeeccchhHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcc-CCceEEEecCCCCC
Confidence 46766542 1 45666666666444555668999999999999999999998878999988 89999999998899
Q ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEEcCHHHHhcccCc----hhhcCCCCC-CCEEEEEEccccccccCCcCCcccCCce
Q 003915 686 DPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGL----RAVFGEVYP-DPVRVVAIGRKVEDLLADPENKEWLSIS 760 (787)
Q Consensus 686 t~eeL~~IE~~vNe~I~~n~pV~~~~~~~~EA~~~~gl----~~~fgE~y~-d~VRVV~Ig~~~~~~~~~~~~~~~~~~s 760 (787)
|++++.+||+.||++|++|+||+..+++++||+++++- ..+...... +.||||++| ++
T Consensus 115 t~edl~~IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~~~yk~~li~~~~~~~~vrv~~~g----------------~~- 177 (645)
T 1nyr_A 115 SSDDFEQIEKTMKQIVNENMKIERKVVSRDEAKELFSNDEYKLELIDAIPEDENVTLYSQG----------------DF- 177 (645)
T ss_dssp CSTTHHHHHHHHHHHHHTTCCEEEEECTTTHHHHHCSSCHHHHHHHCCCSSSCCCEEEEET----------------TE-
T ss_pred CHHHHHHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhhCcchHHHhhcCCCCCeeEEEEEC----------------CE-
Confidence 99999999999999999999999999999999987541 011111111 479999998 44
Q ss_pred eeccCCccccccccCCcEEEeeee
Q 003915 761 AELCGGQYVAIMCSHSWSLALNCL 784 (787)
Q Consensus 761 ~elCGGTHV~nT~eIg~ikil~~~ 784 (787)
.++||||||+||++||.|+|++..
T Consensus 178 ~dlC~G~Hv~~Tg~i~~fkl~~~~ 201 (645)
T 1nyr_A 178 TDLCRGVHVPSTAKIKEFKLLSTA 201 (645)
T ss_dssp EEECCSCCCSCGGGCCEEEEEEEE
T ss_pred EEecCCcccCCCCCCceEEEeeeC
Confidence 789999999999999999999874
No 10
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=99.82 E-value=2e-20 Score=219.71 Aligned_cols=153 Identities=15% Similarity=0.235 Sum_probs=123.0
Q ss_pred ECCEEEEEEEeecCCCcCCCCCEEEEEEehh-chhhhcccccHHHHHHHHHHHHhCC-cceeeeecccCCceEEEeeCCC
Q 003915 606 YGGFVIHIGSLTEGAGRFSVGEEVICKVDYD-RRKLIAPNHTCTHMLNFALREVLGD-HVDQKGSVVLPEKLRFDFSHGK 683 (787)
Q Consensus 606 ~~g~ivH~~~~~~~~~~l~~G~~V~~~VD~e-rR~~~~r~HTAtHLL~aALr~vlG~-~v~q~Gs~v~~d~~RfDFs~~~ 683 (787)
.+|.+++. . ..+..+.+|. .|+++ .+-..+++|||+|||++|++++||. ++ +.|+.+. +++|+||++..
T Consensus 40 vng~~~dl----~--~~l~~d~~~~-~~~~~~~~~~~~~~HSa~HlL~~Al~~~~~~~~~-~~G~~i~-~gfy~Df~~~~ 110 (642)
T 1qf6_A 40 VNGELVDA----C--DLIENDAQLS-IITAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKM-AIGPVID-NGFYYDVDLDR 110 (642)
T ss_dssp ETTEEEET----T--SCBCSCEECC-EECTTSHHHHHHHHHHHHHHHHHHHHHHCTTCEE-CCCCEET-TEEEEEEECSS
T ss_pred ECCEEecc----c--cccCCCceEE-EeecCcHHHHHHHHHHHHHHHHHHHHHhCCCcEE-EECCccC-CeeEEEEeCCC
Confidence 47776653 1 3555555555 45555 5667899999999999999999975 44 7899885 78999999988
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCCEEEEEcCHHHHhcccCc------hhhc-CCCCC-CCEEEEEEccccccccCCcCCcc
Q 003915 684 PVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKCINGL------RAVF-GEVYP-DPVRVVAIGRKVEDLLADPENKE 755 (787)
Q Consensus 684 ~lt~eeL~~IE~~vNe~I~~n~pV~~~~~~~~EA~~~~gl------~~~f-gE~y~-d~VRVV~Ig~~~~~~~~~~~~~~ 755 (787)
++|++++.+||+.||++|++|+||+..+++++||+++... ..+. ++.++ +.||||++|
T Consensus 111 ~~t~edl~~IE~~m~~iI~~~~~v~~~~~~~~eA~~~~~~~~e~yk~~li~~~~~~~~~v~vy~~g-------------- 176 (642)
T 1qf6_A 111 TLTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHE-------------- 176 (642)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTCBEEEEECCHHHHHHHHHHHTCHHHHHHHHHHSCTTCCCEEEEET--------------
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCEEEEEecHHHHHHHhhhhCCcchhhhhhcccCCCCceEEEEEC--------------
Confidence 9999999999999999999999999999999999986321 1111 22222 479999998
Q ss_pred cCCceeeccCCccccccccCCcEEEeeee
Q 003915 756 WLSISAELCGGQYVAIMCSHSWSLALNCL 784 (787)
Q Consensus 756 ~~~~s~elCGGTHV~nT~eIg~ikil~~~ 784 (787)
++ .++||||||+||++||.|||+++.
T Consensus 177 --~~-~dlC~GpHv~~Tg~I~~fkl~~~~ 202 (642)
T 1qf6_A 177 --EY-VDMCRGPHVPNMRFCHHFKLMKTA 202 (642)
T ss_dssp --TE-EECCSSCCCSBGGGCCSEEEEEEE
T ss_pred --CE-EEecCCCccCCCCcceeEEEeeec
Confidence 44 799999999999999999999875
No 11
>3rf1_A Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha, alpha/beta protein, ST genomics; 2.20A {Campylobacter jejuni} PDB: 3rgl_A* 3ufg_A*
Probab=95.84 E-value=0.034 Score=57.87 Aligned_cols=180 Identities=19% Similarity=0.259 Sum_probs=107.3
Q ss_pred CCCCCCChHHHHHHHHHhhhcCCCeEecCCCCccCCCCCcceecccccccccc-ccCCCCCCCccccccccccccccccc
Q 003915 53 PQVVEWPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPI-FLGTADPNTQLSKLTRACNTQKCIRA 131 (787)
Q Consensus 53 ~~~~~~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~dp~llf~nAGm~~fkp~-flG~~~p~~~~~~~~r~~~~QkCiR~ 131 (787)
-++.+|+-.+|--+--+|..++|..++.++.+= .|--.|-|. ||..--|. | -+++-+|+|-|.
T Consensus 20 ~~~~~~~fQ~iIl~Lq~fWa~qGC~i~QPyD~E-----------vGAGT~hPaTfLRalGpe-P----w~~AYVqPsRRP 83 (311)
T 3rf1_A 20 FQSNAMTFSQMILNLQNYWQEQGCAIMQPYDMP-----------AGAGTFHPATFLRSLGKK-P----WAAAYVAPSRRP 83 (311)
T ss_dssp CGGGSCCHHHHHHHHHHHHHTTTCEECCCCSSC-----------CSSGGGSHHHHTTTSSSS-C----EEEEEEEEEECG
T ss_pred eccCcCcHHHHHHHHHHHHHHCCCEEECCcccc-----------ccCCCCCHHHHHHhcCCC-c----ceeeeeccCCCC
Confidence 355668999999999999999999998877642 234467885 55444331 1 378999999997
Q ss_pred -CCCCCCCCCCCCCCCcchhhhhccccccccccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHHHHHHHH
Q 003915 132 -GGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWL 210 (787)
Q Consensus 132 -gGkhnDld~VG~t~rHhTfFEMLGnfSFgdYfK~eAi~~awe~Lt~~lgl~~~rL~vT~~~~d~~~~l~~D~E~~~iW~ 210 (787)
.|+.-+=+| --.||.=|..+=--|-.+ ..+.=.+-| +.|||||..=
T Consensus 84 ~DGRYGeNPN---RLq~yyQfQVilKPsP~n-----iQeLYL~SL-~alGId~~~H------------------------ 130 (311)
T 3rf1_A 84 TDGRYGENPN---RLGAYYQFQVLIKPSPDN-----IQELYLKSL-ENLGFDLKSH------------------------ 130 (311)
T ss_dssp GGCCTTCCSS---CCSEEEEEEEEEESCCTT-----HHHHHHHHH-HHTTCCGGGS------------------------
T ss_pred CCCCcCCCch---hhhhheeeEEEEcCCCcc-----HHHHHHHHH-HHhCCCcccc------------------------
Confidence 333333222 245666666654555443 111112222 2467776532
Q ss_pred hcCCCCCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCceEEEeeeeccccccCCCCccccCCCCcc
Q 003915 211 KFLPASRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHV 290 (787)
Q Consensus 211 ~~~~~~rI~~~~~~dNfW~mG~~GpCGPCsEI~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmqy~r~~~g~l~~Lp~~~I 290 (787)
=+|| .+|| ||-=.-|--|===|+--| | +||=- |+=|.+ ..| + ++..-.+
T Consensus 131 -------DIRF-VEDn-WEsPTLGAWGLGWEVWld---G--------------MEVTQ--FTYFQQ-vGG-i-~c~pv~~ 179 (311)
T 3rf1_A 131 -------DIRF-VEDN-WESPSLGAWGLGWEVWLD---G--------------MEVTQ--FTYFQQ-VGG-I-AVDLVSA 179 (311)
T ss_dssp -------CEEE-EECC-EEETTTTEEEEEEEEEET---T--------------EEEEE--EEEEEE-ETT-E-ECSSCCE
T ss_pred -------CeeE-eccC-CCCCcccccccceEEEEc---C--------------eeEee--eeeeee-eCC-c-cccccce
Confidence 2344 2444 543112444544455433 1 55543 333333 233 3 3444466
Q ss_pred ccCchHHHHHHHHhCCCCCccc
Q 003915 291 DTGLGFERLTSILQNKMSNYDT 312 (787)
Q Consensus 291 DTGmGlERl~~vlqg~~snydt 312 (787)
.-=+||||||+.+||+.|+||.
T Consensus 180 EITYGLERlamylQ~vd~vyDl 201 (311)
T 3rf1_A 180 EITYGLERIAMYLQNVDNVYDI 201 (311)
T ss_dssp EEEEEHHHHHHHHTTCSSGGGS
T ss_pred eeehhHHHHHHHHhCCCeeeec
Confidence 7789999999999999999986
No 12
>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1
Probab=90.72 E-value=0.75 Score=47.74 Aligned_cols=175 Identities=19% Similarity=0.279 Sum_probs=102.1
Q ss_pred CChHHHHHHHHHhhhcCCCeEecCCCCccCCCCCcceecccccccccc-ccCCCCCCCccccccccccccccccc-CCCC
Q 003915 58 WPATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKPI-FLGTADPNTQLSKLTRACNTQKCIRA-GGKH 135 (787)
Q Consensus 58 ~~~~eiR~~Fl~fF~~~gH~~v~ssslvp~~dp~llf~nAGm~~fkp~-flG~~~p~~~~~~~~r~~~~QkCiR~-gGkh 135 (787)
|--.+|--+--+|..++|..++-++.+= .|--.|-|. ||..--|. | -+++-+|+|.|. .|+.
T Consensus 13 ~~fQ~iIl~Lq~fWa~~GC~i~QpyD~E-----------vGAGT~~PaTfLRaLGpe-p----w~~AYVqPsRRP~DGRY 76 (298)
T 1j5w_A 13 MYLQDVIMKLNDFWASKGCLLEQPYDME-----------VGAGTFHPATFFGSLRKG-P----WKVAYVQPSRRPTDGRY 76 (298)
T ss_dssp CCHHHHHHHHHHHHHHTTCEECCCCSSC-----------CSSGGGSHHHHTGGGCSS-C----EEEEEEEEEECCC----
T ss_pred HHHHHHHHHHHHHHHHCCCEEEcCcccc-----------cccccCCHHHHHHhcCCC-c----ceeeeeccCCCCCCCCc
Confidence 5678888899999999999998877652 244467774 44333231 1 378999999998 2332
Q ss_pred CCCCCCCCCCCcchhhhhccccccccccHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHhcCCC
Q 003915 136 NDLDDVGKDTYHHTFFEMLGNWSFGDYFKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLKFLPA 215 (787)
Q Consensus 136 nDld~VG~t~rHhTfFEMLGnfSFgdYfK~eAi~~awe~Lt~~lgl~~~rL~vT~~~~d~~~~l~~D~E~~~iW~~~~~~ 215 (787)
-+=+| --.||.=|..+=--|-.+ ..+.=.+-| +.|||||..
T Consensus 77 GeNPN---RLq~y~QfQVilKPsP~n-----iQeLYL~SL-~alGid~~~------------------------------ 117 (298)
T 1j5w_A 77 GENPN---RLQRYFQYQVIIKPSPEN-----SQELYLESL-EYLGINLKE------------------------------ 117 (298)
T ss_dssp -CCTT---CCSEEEEEEEEEESCCSS-----HHHHHHHHH-HHTTCCTTT------------------------------
T ss_pred CCCch---hhhhheeeEEEECCCCcc-----HHHHHHHHH-HHhCCCccc------------------------------
Confidence 23222 345666666655555543 111111212 246777653
Q ss_pred CCcccCCCCCCcccCCCCCCCcCceeEEeecCCCCCCCCCCCCCCCceEEEeeeeccccccCCCCccccCCCCccccCch
Q 003915 216 SRVLPFGCKDNFWEMGDTGPCGPCSEIHYDRTGNRDAASLVNNDDPTCIEIWNIVFIQFNRESDGSLKPLPAKHVDTGLG 295 (787)
Q Consensus 216 ~rI~~~~~~dNfW~mG~~GpCGPCsEI~yd~~~~~~~~~~~~~~~~r~lEiwNlVFmqy~r~~~g~l~~Lp~~~IDTGmG 295 (787)
|=+|| .+|| ||-=.-|.-|===|+--| | +||=-. +=|.+ ..| + ++..-.+.-=+|
T Consensus 118 -HDIRF-VEDn-WEsPTLGAwGLGWEVWld---G--------------MEITQF--TYFQQ-vGG-i-~c~pv~~EITYG 172 (298)
T 1j5w_A 118 -HDIRF-VEDN-WESPTLGAWGVGWEVWLD---G--------------MEITQF--TYFQQ-IGG-I-SLKDIPLEITYG 172 (298)
T ss_dssp -SCEEE-EEEC-CEEGGGTEEEEEEEEEET---T--------------EEEEEE--EEEEE-BTT-B-CCSSCCEEEEEE
T ss_pred -CCcee-eccC-CCCCccccccccceeeEc---c--------------eeeehh--hhhhh-cCC-c-ccCccceeeccc
Confidence 22444 2455 543112555555566543 1 666533 32333 233 3 344456777899
Q ss_pred HHHHHHHHhCCCCCccc
Q 003915 296 FERLTSILQNKMSNYDT 312 (787)
Q Consensus 296 lERl~~vlqg~~snydt 312 (787)
|||||+.+||+.|+||.
T Consensus 173 LERiamylQ~vd~vydl 189 (298)
T 1j5w_A 173 LERIAMYLQGVDNVYEV 189 (298)
T ss_dssp HHHHHHHHHTCSSGGGC
T ss_pred HHHHHHHHhCCCceecc
Confidence 99999999999999996
No 13
>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii}
Probab=68.26 E-value=2.5 Score=37.99 Aligned_cols=30 Identities=13% Similarity=0.203 Sum_probs=26.3
Q ss_pred cHHHHHHHHHHHcccccCCCCCceEEEEEC
Q 003915 163 FKNEAIEWAWELLTKVYRLPADRLYATYFG 192 (787)
Q Consensus 163 fK~eAi~~awe~Lt~~lgl~~~rL~vT~~~ 192 (787)
-|++-++-.-++|.++||+||+|+||.+++
T Consensus 72 ~~~~l~~~i~~~l~~~Lgi~~~riyI~f~d 101 (114)
T 4dh4_A 72 TNCKIAAALSAACERHLGVPKNRIYTTFTN 101 (114)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcccEEEEEEe
Confidence 467777888899999999999999999975
No 14
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=66.15 E-value=7.4 Score=43.29 Aligned_cols=110 Identities=15% Similarity=0.196 Sum_probs=64.1
Q ss_pred hHHHHHHHHHhhhcCCCeEecCCCCccCCCCCcceecccc--------cccc--cccc-------------CCCCCCCcc
Q 003915 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGM--------NQYK--PIFL-------------GTADPNTQL 116 (787)
Q Consensus 60 ~~eiR~~Fl~fF~~~gH~~v~ssslvp~~dp~llf~nAGm--------~~fk--p~fl-------------G~~~p~~~~ 116 (787)
-..|.+.++++|.++|+..|-.-.+++.. +|..+|. ..|. .++| ........+
T Consensus 175 ~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~----l~~~sG~~~~f~~emy~~~~~~l~LrPt~e~~i~~~~~~~i~s~~~L 250 (425)
T 2dq3_A 175 ERALINFMLDLHTKKGYKEICPPHLVKPE----ILIGTGQLPKFEEDLYKCERDNLYLIPTAEVPLTNLYREEILKEENL 250 (425)
T ss_dssp HHHHHHHHHHHHHHTTCEEEECCSEECHH----HHHHHSCTTTTGGGSCBCTTTCCEECSSTHHHHHGGGTTEEEETTTC
T ss_pred HHHHHHHHHHHHHHcCCEEEECCccccHH----HHHhcCCCCcChhhheEecCCeEEEcCCCcHHHHHHHHhhccccccC
Confidence 45677788888988999999876676631 2222221 1111 1222 111111111
Q ss_pred cccccccccccccccCCCCCCCCCCCCCC----Ccchhhhhccccccccc-----cHHHHHHHHHHHcccccCCC
Q 003915 117 SKLTRACNTQKCIRAGGKHNDLDDVGKDT----YHHTFFEMLGNWSFGDY-----FKNEAIEWAWELLTKVYRLP 182 (787)
Q Consensus 117 ~~~~r~~~~QkCiR~gGkhnDld~VG~t~----rHhTfFEMLGnfSFgdY-----fK~eAi~~awe~Lt~~lgl~ 182 (787)
..|.+-.++|.|- ....-|++. |=|. |.|..-++|+.= .-+|.+.++.++|. .||||
T Consensus 251 --Plrl~~~g~~FR~-----E~~~~Gr~~~Gl~R~re-F~q~E~~~f~~pe~s~~~~~e~i~~~~~il~-~LGL~ 316 (425)
T 2dq3_A 251 --PIYLTAYTPCYRR-----EAGAYGKDIRGIIRQHQ-FDKVELVKIVHPDTSYDELEKLVKDAEEVLQ-LLGLP 316 (425)
T ss_dssp --CEEEEEEEEEECC-----CCSCCSSSCSSSSSCSE-EEEEEEEEEECGGGHHHHHHHHHHHHHHHHH-HHTCC
T ss_pred --CeEEEEecCEecC-----CCCcccccccCcccccc-eEEeeEEEECCHHHHHHHHHHHHHHHHHHHH-HCCCc
Confidence 2478888999994 543333321 3333 556677888731 22678999999995 59998
No 15
>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major}
Probab=62.63 E-value=4 Score=38.07 Aligned_cols=30 Identities=23% Similarity=0.343 Sum_probs=25.4
Q ss_pred cHHHHHHHHHHHcccccCCCCCceEEEEEC
Q 003915 163 FKNEAIEWAWELLTKVYRLPADRLYATYFG 192 (787)
Q Consensus 163 fK~eAi~~awe~Lt~~lgl~~~rL~vT~~~ 192 (787)
-|++-.+-.-++|.+.|||||+|+||.+++
T Consensus 93 ~n~~~s~~i~~~l~~~LgI~~~riyI~f~d 122 (133)
T 3fwu_A 93 EPEKVTSIVTAAITKECGIVADRIFVLYFS 122 (133)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhCcChhhEEEEEEE
Confidence 456666777899999999999999999975
No 16
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ...
Probab=62.54 E-value=3.8 Score=36.91 Aligned_cols=29 Identities=24% Similarity=0.489 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEEC
Q 003915 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (787)
Q Consensus 164 K~eAi~~awe~Lt~~lgl~~~rL~vT~~~ 192 (787)
|++-.+---++|.+.||+|++|+||.+++
T Consensus 72 n~~~s~~i~~~l~~~Lgi~~~riyI~f~d 100 (114)
T 3djh_A 72 NRSYSKLLCGLLAERLRISPDRVYINYYD 100 (114)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcceEEEEEEE
Confidence 45556667789999999999999999975
No 17
>3kan_A D-dopachrome tautomerase; immune response, cytokine, cytokine-inhibitor C; HET: RW1; 1.13A {Homo sapiens} SCOP: d.80.1.3 PDB: 1dpt_A* 3ker_A*
Probab=61.04 E-value=4.1 Score=36.98 Aligned_cols=29 Identities=28% Similarity=0.414 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEEC
Q 003915 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (787)
Q Consensus 164 K~eAi~~awe~Lt~~lgl~~~rL~vT~~~ 192 (787)
+++-.+---++|.+.||+|++|+||.++.
T Consensus 73 n~~~s~~i~~~l~~~Lgi~~~RiyI~f~d 101 (117)
T 3kan_A 73 NRSHSAHFFEFLTKELALGQDRILIRFFP 101 (117)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcCeEEEEEEE
Confidence 44555666788999999999999999975
No 18
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=60.92 E-value=4.6 Score=35.98 Aligned_cols=30 Identities=23% Similarity=0.343 Sum_probs=26.7
Q ss_pred cHHHHHHHHHHHcccccCCCCCceEEEEEC
Q 003915 163 FKNEAIEWAWELLTKVYRLPADRLYATYFG 192 (787)
Q Consensus 163 fK~eAi~~awe~Lt~~lgl~~~rL~vT~~~ 192 (787)
-|++-++-..++|.+.||+||+++||++.+
T Consensus 72 qk~~l~~~i~~~l~~~lgi~~~~v~I~~~e 101 (112)
T 3b64_A 72 EPEKVTSIVTAAITKECGIVADRIFVLYFS 101 (112)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhCcCcceEEEEEEE
Confidence 477778888899999999999999999975
No 19
>3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.90A {Leishmania major}
Probab=58.18 E-value=4.9 Score=37.47 Aligned_cols=30 Identities=23% Similarity=0.368 Sum_probs=24.9
Q ss_pred cHHHHHHHHHHHcccccCCCCCceEEEEEC
Q 003915 163 FKNEAIEWAWELLTKVYRLPADRLYATYFG 192 (787)
Q Consensus 163 fK~eAi~~awe~Lt~~lgl~~~rL~vT~~~ 192 (787)
-|++-.+-.-++|.+.|||||+|+||.+++
T Consensus 93 ~n~~~s~~i~~~l~~~LgI~~~rvyI~f~d 122 (133)
T 3fwt_A 93 KPKMMTPRIAAAITKECGIPAERIYVFYYS 122 (133)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcChhhEEEEEEE
Confidence 355556667789999999999999999975
No 20
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=58.15 E-value=29 Score=39.71 Aligned_cols=53 Identities=9% Similarity=0.122 Sum_probs=35.0
Q ss_pred cccc-cccccccCCCCCCCCC--CCCCCCcchhhhhccccccccc-----cHHHHH-HHHHHHcccccCCC
Q 003915 121 RACN-TQKCIRAGGKHNDLDD--VGKDTYHHTFFEMLGNWSFGDY-----FKNEAI-EWAWELLTKVYRLP 182 (787)
Q Consensus 121 r~~~-~QkCiR~gGkhnDld~--VG~t~rHhTfFEMLGnfSFgdY-----fK~eAi-~~awe~Lt~~lgl~ 182 (787)
|++. .++|.|- . .. -|.. |=|- |+|..-++|++- +=++.+ .++++|+. .||||
T Consensus 346 rl~q~ig~~FR~-----E-pgs~~GL~-R~RE-F~q~E~~~F~~pe~s~ee~ee~i~~~~~~~l~-~LGLp 407 (522)
T 2cja_A 346 KVFDRSGTSHRY-----E-SGGIHGIE-RVDE-FHRIEIVWIGTKEEVLKCAEELHDRYMHIFND-ILDIE 407 (522)
T ss_dssp EEEECSSEEECC-----C-SSSCCCTT-SCSE-EEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHH-TSCCC
T ss_pred eEEEEcCceEeC-----C-CCCCCCCe-EeEE-EEEeeEEEEeChHHHHHHHHHHHHHHHHHHHH-HcCCC
Confidence 6777 8899994 5 32 2222 3233 678888999841 224567 88888885 59999
No 21
>3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia}
Probab=56.31 E-value=5.2 Score=37.37 Aligned_cols=29 Identities=14% Similarity=0.249 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEEC
Q 003915 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (787)
Q Consensus 164 K~eAi~~awe~Lt~~lgl~~~rL~vT~~~ 192 (787)
|++-.+-.-++|.+.||+||+|+||.+++
T Consensus 94 n~~~s~~i~~~l~~~Lgi~~~riyI~f~d 122 (135)
T 3t5s_A 94 NPSISAAITGCLTQHFKVKPERVYISFNE 122 (135)
T ss_dssp CHHHHHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred CchHHHHHHHHHHHhcccCccEEEEEecc
Confidence 45556667789999999999999999975
No 22
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=55.37 E-value=6.4 Score=35.89 Aligned_cols=31 Identities=10% Similarity=0.126 Sum_probs=27.4
Q ss_pred ccHHHHHHHHHHHcccccCCCCCceEEEEEC
Q 003915 162 YFKNEAIEWAWELLTKVYRLPADRLYATYFG 192 (787)
Q Consensus 162 YfK~eAi~~awe~Lt~~lgl~~~rL~vT~~~ 192 (787)
=-|++-++-..++|.+.||+||+++||++.+
T Consensus 71 eqk~~l~~~i~~~l~~~lgi~~~~v~I~~~e 101 (125)
T 2wkb_A 71 SNNSLLADKITKILSNHLSVKPRRVYIEFRD 101 (125)
T ss_dssp CTHHHHHHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHhCcCcceEEEEEEE
Confidence 3477888888999999999999999999975
No 23
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=54.79 E-value=6.1 Score=35.11 Aligned_cols=30 Identities=13% Similarity=0.352 Sum_probs=26.3
Q ss_pred cHHHHHHHHHHHcccccCCCCCceEEEEEC
Q 003915 163 FKNEAIEWAWELLTKVYRLPADRLYATYFG 192 (787)
Q Consensus 163 fK~eAi~~awe~Lt~~lgl~~~rL~vT~~~ 192 (787)
-|++-++-..++|.+.||+||+++||++.+
T Consensus 71 qk~~l~~~i~~~l~~~lgi~~~~v~I~~~e 100 (113)
T 1hfo_A 71 RNRDHSAKLFDHLNTKLGIPKNRMYIHFVN 100 (113)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcCeEEEEEEE
Confidence 367778888899999999999999999976
No 24
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=54.73 E-value=6.1 Score=35.27 Aligned_cols=29 Identities=24% Similarity=0.406 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEEC
Q 003915 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (787)
Q Consensus 164 K~eAi~~awe~Lt~~lgl~~~rL~vT~~~ 192 (787)
|++-++-..++|.+.||+||+++||++.+
T Consensus 73 k~~l~~~i~~~l~~~lgi~~~~v~I~~~e 101 (115)
T 2xcz_A 73 TQEVSELVCGHIEQNLGIPADRIYIGFED 101 (115)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 67778888899999999999999999976
No 25
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=53.15 E-value=6.7 Score=35.00 Aligned_cols=29 Identities=28% Similarity=0.613 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEEC
Q 003915 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (787)
Q Consensus 164 K~eAi~~awe~Lt~~lgl~~~rL~vT~~~ 192 (787)
|++-++-..++|.+.||+||+++||++.+
T Consensus 73 k~~l~~~i~~~l~~~lgi~~~~v~I~~~e 101 (115)
T 1uiz_A 73 NKSYTKLLCDILTKQLNIPANRVYINYYD 101 (115)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcceEEEEEEE
Confidence 67777888899999999999999999976
No 26
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=53.08 E-value=6.7 Score=35.33 Aligned_cols=29 Identities=21% Similarity=0.376 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEEC
Q 003915 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (787)
Q Consensus 164 K~eAi~~awe~Lt~~lgl~~~rL~vT~~~ 192 (787)
|++-++-..++|.+.||+||+++||.+.+
T Consensus 73 k~~l~~~i~~~l~~~lgi~~~~v~I~~~e 101 (119)
T 2os5_A 73 NIRHTQKITQFCQDTLKLPKDKVIITYFD 101 (119)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 67777888899999999999999999976
No 27
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=46.57 E-value=7.8 Score=40.88 Aligned_cols=109 Identities=15% Similarity=0.128 Sum_probs=62.0
Q ss_pred hHHHHHHHHHhhhcCCCeEecCCCCccCCCCCcceec-----cccccc----cccccCCCCCCC-----ccccccccccc
Q 003915 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFAN-----AGMNQY----KPIFLGTADPNT-----QLSKLTRACNT 125 (787)
Q Consensus 60 ~~eiR~~Fl~fF~~~gH~~v~ssslvp~~dp~llf~n-----AGm~~f----kp~flG~~~p~~-----~~~~~~r~~~~ 125 (787)
-+.|.+.+-+||.++|...|..--+.+.+| ++-.. |=|.++ ++++|-+. |.- -.++..|+-..
T Consensus 18 rs~i~~~ir~~f~~~GF~EVeTP~l~~~~~--~~~~~~~~e~a~~f~~~~~~~~~~L~~S-pe~~~~~l~~~g~~rvf~i 94 (294)
T 1nnh_A 18 QTKILEYMTDFFVKEGFKWLLPVIISPITD--PLWPDPAGEGMEPAEVEIYGVKMRLTHS-MILHKQLAIAMGLKKIFVL 94 (294)
T ss_dssp HHHHHHHHHHHHHHTTCEEECCCCEESCCC--CCCSCTTCCCCCCCEEEETTEEEEECSC-SHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEECCEEEEccc--hhccCCCCCcceeEEEEcCCCCEEeccC-hHHHHHHHhhcCccceEEE
Confidence 356778888999999998887544444311 11111 112221 12334211 100 00124578888
Q ss_pred ccccccCCCCCCCCCCCCCCCcchhhhhccc-cccccccHHHHHHHHHHHccccc
Q 003915 126 QKCIRAGGKHNDLDDVGKDTYHHTFFEMLGN-WSFGDYFKNEAIEWAWELLTKVY 179 (787)
Q Consensus 126 QkCiR~gGkhnDld~VG~t~rHhTfFEMLGn-fSFgdYfK~eAi~~awe~Lt~~l 179 (787)
-+|.|. +=+.. .|+||..=|-|++= .+|.|| +|.+..+.+|+...+
T Consensus 95 g~~FR~-----E~pq~-~~~RH~~EFtqle~e~~~~~~--~~l~~~~e~l~~~l~ 141 (294)
T 1nnh_A 95 SPNIRL-----ESRQK-DDGRHAYEFTQLDFEVERAKM--EDIMRLIERLVYGLF 141 (294)
T ss_dssp EEEECC-----CCGGG-CSSSCCSEEEEEEEEEETCCH--HHHHHHHHHHHHHHH
T ss_pred EccEeC-----CCCCC-CCCccccceeEEEEEecCCCH--HHHHHHHHHHHHHHH
Confidence 999995 42112 25799977888764 444464 688888888876543
No 28
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=44.64 E-value=11 Score=29.26 Aligned_cols=30 Identities=17% Similarity=0.132 Sum_probs=25.5
Q ss_pred cHHHHHHHHHHHcccccCCCCCceEEEEEC
Q 003915 163 FKNEAIEWAWELLTKVYRLPADRLYATYFG 192 (787)
Q Consensus 163 fK~eAi~~awe~Lt~~lgl~~~rL~vT~~~ 192 (787)
-|++-++-..+.|.+.||+|++++||.+.+
T Consensus 15 ~k~~l~~~i~~~l~~~lg~p~~~v~v~i~e 44 (62)
T 1otf_A 15 QKETLIRQVSEAMANSLDAPLERVRVLITE 44 (62)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 466667778888999999999999999875
No 29
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=44.61 E-value=11 Score=29.21 Aligned_cols=30 Identities=10% Similarity=0.023 Sum_probs=25.4
Q ss_pred cHHHHHHHHHHHcccccCCCCCceEEEEEC
Q 003915 163 FKNEAIEWAWELLTKVYRLPADRLYATYFG 192 (787)
Q Consensus 163 fK~eAi~~awe~Lt~~lgl~~~rL~vT~~~ 192 (787)
-|++-++-..+.|.+.||+|++++||.+.+
T Consensus 15 qk~~l~~~i~~~l~~~lg~~~~~v~V~i~e 44 (61)
T 2opa_A 15 QKRNLVEKVTEAVKETTGASEEKIVVFIEE 44 (61)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcCeEEEEEEE
Confidence 366667777888999999999999999875
No 30
>3n4h_A Putative tautomerase; CG10062, CIS-3-chloroacrylic acid dehalogenase, tautomerase superfamily, beta-alpha-beta motif, hydrolase; HET: PR7; 2.02A {Corynebacterium glutamicum} PDB: 3n4d_A* 3n4g_A
Probab=43.52 E-value=12 Score=35.16 Aligned_cols=53 Identities=15% Similarity=0.266 Sum_probs=28.8
Q ss_pred cHHHHHHHHHHHcccccCCCCCceEEEEECCCCcC----C-CCCcHHHHHHHHhcCCC
Q 003915 163 FKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKA----G-LAPDNEARDIWLKFLPA 215 (787)
Q Consensus 163 fK~eAi~~awe~Lt~~lgl~~~rL~vT~~~~d~~~----~-l~~D~E~~~iW~~~~~~ 215 (787)
-|++-++-..+.|.+.+|+|++++||++.+=+... | +.+|....+.|.+.+|.
T Consensus 77 qk~~l~~~l~~~l~~~lgi~~~~v~V~i~E~~~~~wg~gG~~~~~~g~e~~W~~~~~~ 134 (148)
T 3n4h_A 77 QKEELLLRLTQEIALILGIPNEEVWVYITEIPGSNMTEYGRLLMEPGEEEKWFNSLPE 134 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGEEEEEEEECGGGCCCSSCC----------------
T ss_pred HHHHHHHHHHHHHHHHhCcCcCcEEEEEEEcCHHHeeECCEECCCCcchHHHHHhCcH
Confidence 36777888889999999999999999998643311 2 35555556677665544
No 31
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=43.01 E-value=15 Score=28.87 Aligned_cols=29 Identities=14% Similarity=0.264 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEEC
Q 003915 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (787)
Q Consensus 164 K~eAi~~awe~Lt~~lgl~~~rL~vT~~~ 192 (787)
|++-++-.-+.|.+.+|+|++++||.+.+
T Consensus 17 k~~l~~~lt~~l~~~lg~~~~~v~V~i~e 45 (64)
T 3abf_A 17 KRELVRRLTEMASRLLGEPYEEVRVILYE 45 (64)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCcccEEEEEEE
Confidence 55666777788889999999999999875
No 32
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=38.09 E-value=35 Score=28.09 Aligned_cols=42 Identities=10% Similarity=0.109 Sum_probs=31.2
Q ss_pred cHHHHHHHHHHHcccccCCCCCceEEEEECCCCcCCCCCcHHHHHHHHh
Q 003915 163 FKNEAIEWAWELLTKVYRLPADRLYATYFGGDEKAGLAPDNEARDIWLK 211 (787)
Q Consensus 163 fK~eAi~~awe~Lt~~lgl~~~rL~vT~~~~d~~~~l~~D~E~~~iW~~ 211 (787)
-|++-++-.-+.|.+.||+|++++||.+.+ .++++=+. +|..
T Consensus 16 qk~~L~~~l~~~l~~~lgip~~~v~V~i~e------~~~~~w~~-v~~~ 57 (76)
T 1gyx_A 16 QKAALAADITDVIIRHLNSKDSSISIALQQ------IQPESWQA-IWDA 57 (76)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEEEE------CCGGGHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHhCcCCceEEEEEEE------eChHHEEE-EEch
Confidence 356667777888999999999999999976 33445555 6643
No 33
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=36.37 E-value=75 Score=27.94 Aligned_cols=48 Identities=21% Similarity=0.195 Sum_probs=39.4
Q ss_pred cCCCCChHHHHHhhhcCCCChhhHHHHHHHcCc----ccChhhHHHHHHHHH
Q 003915 453 QGKVLSGQDAFILWDTYGFPLDLTQLMAEERGL----LVDIEGFNNAMDEAR 500 (787)
Q Consensus 453 ~~~~isg~~af~LydTyGfP~dlt~~ia~e~gl----~vD~~~F~~~m~~~r 500 (787)
+.+.|+++++-.++-+.|+|.+.+.+|.++... .+|.++|..+|..-.
T Consensus 27 ~dG~Is~~el~~~l~~~gl~~~el~~i~~~~D~d~dG~id~~EF~~~m~~~~ 78 (106)
T 1eh2_A 27 VNGFLSGDKVKPVLLNSKLPVDILGRVWELSDIDHDGMLDRDEFAVAMFLVY 78 (106)
T ss_dssp SSSCCBHHHHHHHHHTTTCCHHHHHHHHHHHCSSCSSBCCHHHHHHHHHHHH
T ss_pred CCCeEcHHHHHHHHHHcCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHHH
Confidence 467999999999999999999988888776443 488899999986643
No 34
>1mww_A Hypothetical protein HI1388.1; structural genomics, structure 2 function project, S2F, unknown function; HET: GLU; 2.08A {Haemophilus influenzae} SCOP: d.80.1.4
Probab=33.29 E-value=21 Score=32.38 Aligned_cols=30 Identities=17% Similarity=0.052 Sum_probs=26.0
Q ss_pred cHHHHHHHHHHHcccccCCCCCceEEEEEC
Q 003915 163 FKNEAIEWAWELLTKVYRLPADRLYATYFG 192 (787)
Q Consensus 163 fK~eAi~~awe~Lt~~lgl~~~rL~vT~~~ 192 (787)
-|++-++-..+.|.+.||+|++++||.+.+
T Consensus 74 qK~~l~~~l~~~l~~~lg~~~~~v~V~i~e 103 (128)
T 1mww_A 74 TKKRLIKMLFSELEYKLGIRAHDVEITIKE 103 (128)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcChhhEEEEEEE
Confidence 467777888888999999999999999975
No 35
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=32.16 E-value=27 Score=27.95 Aligned_cols=29 Identities=21% Similarity=0.146 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEEC
Q 003915 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (787)
Q Consensus 164 K~eAi~~awe~Lt~~lgl~~~rL~vT~~~ 192 (787)
|++-++-..+.|.+.||+|++.+||.+.+
T Consensus 19 K~~l~~~lt~~l~~~lg~p~~~v~V~i~e 47 (67)
T 3m21_A 19 KQQLIEGVSDLMVKVLNKNKASIVVIIDE 47 (67)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHCcCcccEEEEEEE
Confidence 66667777888889999999999999875
No 36
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=31.84 E-value=35 Score=26.94 Aligned_cols=29 Identities=14% Similarity=0.189 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEEC
Q 003915 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (787)
Q Consensus 164 K~eAi~~awe~Lt~~lgl~~~rL~vT~~~ 192 (787)
|++-++-.-+.+.+.+|+|++.++|.+.+
T Consensus 15 K~~L~~~it~~~~~~lg~~~~~v~V~i~E 43 (62)
T 3m20_A 15 KREFVERLTSVAAEIYGMDRSAITILIHE 43 (62)
T ss_dssp HHHHHHHHHHHHHHHHTCCTTSCEEEEEC
T ss_pred HHHHHHHHHHHHHHHhCcCcceEEEEEEE
Confidence 66667777788889999999999999875
No 37
>2aal_A Malonate semialdehyde decarboxylase; tautomerase superfamily, beta-alpha-beta, homotrimeric, LYAS; 1.65A {Pseudomonas pavonaceae} SCOP: d.80.1.6 PDB: 2aag_A 2aaj_A
Probab=30.53 E-value=25 Score=32.07 Aligned_cols=29 Identities=10% Similarity=0.003 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEEC
Q 003915 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (787)
Q Consensus 164 K~eAi~~awe~Lt~~lgl~~~rL~vT~~~ 192 (787)
|++-++-.-+.|.+.||+|++++||.+.+
T Consensus 81 K~~l~~~l~~~l~~~lg~~~~~v~I~i~e 109 (131)
T 2aal_A 81 KVCFYKLLTGALERDCGISPDDVIVALVE 109 (131)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 77888888899999999999999999976
No 38
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=29.88 E-value=19 Score=38.90 Aligned_cols=103 Identities=16% Similarity=0.239 Sum_probs=59.8
Q ss_pred HHHHHHHHhhhcCCCeEecCCCCccCCCCCcceeccccccccc------------cccCCCCC---C-Cccccccccccc
Q 003915 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYKP------------IFLGTADP---N-TQLSKLTRACNT 125 (787)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~ssslvp~~dp~llf~nAGm~~fkp------------~flG~~~p---~-~~~~~~~r~~~~ 125 (787)
+|-+.+-+||.++|-..|..=-|.+.. +. .|+..+|+= .+|-+.+- . --.+.+.|+-..
T Consensus 41 ~i~~~iR~ff~~~gF~EVeTPiL~~~~-~~----~a~~~~F~~~~~~~~~~~~~~~yL~~Spql~~k~l~~~g~~rvyqI 115 (345)
T 3a5y_A 41 AIMAEIRRFFADRGVLEVETPCMSQAT-VT----DIHLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLLVAGCGPVFQL 115 (345)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSC-CC----CTTCCCCEEEECCSTTSCCEEEEECSCSHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHHHHHCCCEEEECCEEEecC-CC----CCccceEEEEecCcccccCCCEeecCCHHHHHHHHHHcCCCcEEEE
Confidence 455667789999999888755454422 11 123334432 23322110 0 000124577788
Q ss_pred ccccccCCCCCCCCCCCCCCCcchhhhhcc-ccccccccHHHHHHHHHHHcccccC
Q 003915 126 QKCIRAGGKHNDLDDVGKDTYHHTFFEMLG-NWSFGDYFKNEAIEWAWELLTKVYR 180 (787)
Q Consensus 126 QkCiR~gGkhnDld~VG~t~rHhTfFEMLG-nfSFgdYfK~eAi~~awe~Lt~~lg 180 (787)
-||.|.. +. |.||..=|-||- -.+|.|| ++.++.+=+++..+++
T Consensus 116 g~~FR~E-------~~--~~rH~pEFt~lE~e~af~d~--~d~m~~~E~li~~v~~ 160 (345)
T 3a5y_A 116 CRSFRNE-------EM--GRYHNPEFTMLEWYRPHYDM--YRLMNEVDDLLQQVLD 160 (345)
T ss_dssp EEEECCC-------CC--BTTBCSEEEEEEEEEETCCH--HHHHHHHHHHHHHHHC
T ss_pred EcceeCC-------CC--cccccchhheeeeeeeCCCH--HHHHHHHHHHHHHHHc
Confidence 8999962 33 789999888885 4567776 5566666666655544
No 39
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=29.69 E-value=1e+02 Score=25.95 Aligned_cols=48 Identities=15% Similarity=0.115 Sum_probs=38.0
Q ss_pred cCCCCChHHHHHhhhcCCCChhhHHHHHHHcCc----ccChhhHHHHHHHHH
Q 003915 453 QGKVLSGQDAFILWDTYGFPLDLTQLMAEERGL----LVDIEGFNNAMDEAR 500 (787)
Q Consensus 453 ~~~~isg~~af~LydTyGfP~dlt~~ia~e~gl----~vD~~~F~~~m~~~r 500 (787)
+.+.|+.+++-.++.+.|+|.+.+.+|.++... .||.++|..+|....
T Consensus 23 ~dG~I~~~el~~~l~~~g~~~~~~~~i~~~~D~d~dG~i~~~EF~~~~~~~~ 74 (95)
T 1c07_A 23 MDGFVSGLEVREIFLKTGLPSTLLAHIWSLCDTKDCGKLSKDQFALAFHLIS 74 (95)
T ss_dssp CSSEECHHHHHHHHHTTTCCHHHHHHHHHHHCTTCSSSEETTTHHHHHHHHH
T ss_pred CCCcEeHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHH
Confidence 357899999999999999998888887766432 477888999886544
No 40
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=29.29 E-value=29 Score=28.21 Aligned_cols=29 Identities=10% Similarity=0.024 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEEC
Q 003915 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (787)
Q Consensus 164 K~eAi~~awe~Lt~~lgl~~~rL~vT~~~ 192 (787)
|++-++-..+.+.+.||+|++.+||.+.+
T Consensus 17 K~~L~~~it~~l~~~lg~p~~~v~V~i~e 45 (72)
T 3mb2_A 17 KAELARALSAAAAAAFDVPLAEVRLIIQE 45 (72)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCcccEEEEEEE
Confidence 66667777888889999999999999865
No 41
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=28.29 E-value=30 Score=26.58 Aligned_cols=29 Identities=3% Similarity=-0.107 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHcccccCCCCCceEEEEEC
Q 003915 164 KNEAIEWAWELLTKVYRLPADRLYATYFG 192 (787)
Q Consensus 164 K~eAi~~awe~Lt~~lgl~~~rL~vT~~~ 192 (787)
|++-++-..+.|.+.||+|++++||.+.+
T Consensus 19 k~~l~~~l~~~l~~~lg~p~~~v~v~i~e 47 (63)
T 2x4k_A 19 LKNLVSEVTDAVEKTTGANRQAIHVVIEE 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 55556777788889999999999999875
No 42
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=27.38 E-value=23 Score=39.46 Aligned_cols=103 Identities=16% Similarity=0.240 Sum_probs=55.9
Q ss_pred hHHHHHHHHHhhhcCCCeEecCCCCccC-CCC--CcceeccccccccccccCCCCCCCc----ccccccccccccccccC
Q 003915 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPV-NDP--TLLFANAGMNQYKPIFLGTADPNTQ----LSKLTRACNTQKCIRAG 132 (787)
Q Consensus 60 ~~eiR~~Fl~fF~~~gH~~v~ssslvp~-~dp--~llf~nAGm~~fkp~flG~~~p~~~----~~~~~r~~~~QkCiR~g 132 (787)
-++|-+.+-+||.++|-..|..--+.+. ..+ .++-|+.. =++++|-+. |.-. .+.+.|+-..-+|.|.
T Consensus 137 rs~i~~~ir~ff~~~gF~eV~TP~l~~~~~e~~~~~f~~~~~---~~~~~L~~S-pql~~~~~~~g~~rvf~ig~~FR~- 211 (429)
T 1wyd_A 137 QSLALKAFRETLYKEGFIEIFTPKIIASATEGGAQLFPVIYF---GKEAFLAQS-PQLYKELMAGVVERVFEVAPAWRA- 211 (429)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEESSCSSTTCCCCEEEET---TEEEEECSC-CHHHHHHHHHHHSEEEEEEEEECC-
T ss_pred HHHHHHHHHHHHhhCCCEEEECCEEEeeCCCCCceeEEEecC---CceEEecCC-cHHHHHHHHhCcCceEEEcccccc-
Confidence 3456678889999999888866544442 111 12222210 023444221 1100 0013467778899996
Q ss_pred CCCCCCCCCCCCCCcchhhhhccc-cccccccHHHHHHHHHHHcc
Q 003915 133 GKHNDLDDVGKDTYHHTFFEMLGN-WSFGDYFKNEAIEWAWELLT 176 (787)
Q Consensus 133 GkhnDld~VG~t~rHhTfFEMLGn-fSFgdYfK~eAi~~awe~Lt 176 (787)
+ +. .++||..=|-|+.- .+|.|| +|.+..+.+++.
T Consensus 212 ----E--~~-~~~RH~pEFtqle~e~~~~~~--~dlm~~~e~ll~ 247 (429)
T 1wyd_A 212 ----E--ES-DTPFHLAEFISMDVEMAFADY--NDVMQLLEKILH 247 (429)
T ss_dssp ----C--CC-CSSSCCSEEEEEEEEEETCCH--HHHHHHHHHHHH
T ss_pred ----c--CC-ccccccceeeEeeeeecCCCH--HHHHHHHHHHHH
Confidence 3 11 25699877777753 455565 556666555544
No 43
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=27.18 E-value=1.2e+02 Score=25.88 Aligned_cols=46 Identities=13% Similarity=0.066 Sum_probs=38.0
Q ss_pred CCCCChHHHHHhhhcCCCChhhHHHHHHHcCc----ccChhhHHHHHHHH
Q 003915 454 GKVLSGQDAFILWDTYGFPLDLTQLMAEERGL----LVDIEGFNNAMDEA 499 (787)
Q Consensus 454 ~~~isg~~af~LydTyGfP~dlt~~ia~e~gl----~vD~~~F~~~m~~~ 499 (787)
.+.|+.+++-.+..+.|+|-+.+.+|.++... .||.++|..+|...
T Consensus 25 dG~Is~~el~~~l~~~~l~~~~l~~i~~~~D~d~dG~i~~~EF~~~~~~~ 74 (99)
T 1qjt_A 25 TGRVLALDAAAFLKKSGLPDLILGKIWDLADTDGKGVLSKQEFFVALRLV 74 (99)
T ss_dssp SSCCCSHHHHHHHHTSSSCHHHHHHHHHHHCCSSSSSCCSHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHH
Confidence 57999999999999999999888888776433 48889999998654
No 44
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=27.06 E-value=22 Score=39.61 Aligned_cols=28 Identities=29% Similarity=0.331 Sum_probs=23.5
Q ss_pred CccccCchHHHHHHHHhCCCCCcccccc
Q 003915 288 KHVDTGLGFERLTSILQNKMSNYDTDVF 315 (787)
Q Consensus 288 ~~IDTGmGlERl~~vlqg~~snydtD~F 315 (787)
++=--|+|+|||++++-|.+|.=|+=+|
T Consensus 402 P~~G~GlGidRLvm~l~g~~~Irdvi~F 429 (438)
T 3nem_A 402 PHGGFGLGAERLIKQMLDLPNIREVILF 429 (438)
T ss_dssp CEEEEEEEHHHHHHHHTTCSCGGGGSSS
T ss_pred CceEEEEhHHHHHHHHhCCCcHHHcccC
Confidence 4667799999999999999998777554
No 45
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=27.00 E-value=46 Score=29.77 Aligned_cols=31 Identities=3% Similarity=0.161 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHhcCCCCChHHHHHhhhc
Q 003915 438 LLKGIEKFKKAAQDVQGKVLSGQDAFILWDT 468 (787)
Q Consensus 438 L~~G~~~l~~~i~~~~~~~isg~~af~LydT 468 (787)
.+.++..|+.+++++.++.+|-++++.+|.-
T Consensus 32 FEeal~eLEeIV~~LE~gel~LEesl~lyee 62 (100)
T 1vp7_A 32 FETALAELESLVSAMENGTLPLEQSLSAYRR 62 (100)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3456677888888888889999999999854
No 46
>4gyx_A Type III collagen fragment in A HOST peptide STAB the cysteine knot; collagen triple helix, type III collagen cysteine knot, BLOO clotting; 1.49A {Homo sapiens}
Probab=26.19 E-value=24 Score=24.13 Aligned_cols=10 Identities=60% Similarity=1.427 Sum_probs=7.4
Q ss_pred CCCCCCcCce
Q 003915 231 GDTGPCGPCS 240 (787)
Q Consensus 231 G~~GpCGPCs 240 (787)
|+.||-|||-
T Consensus 19 gppgppgpcc 28 (31)
T 4gyx_A 19 GPPGPPGPCC 28 (31)
T ss_dssp CCCCCCCCCC
T ss_pred CCCCCCCCCc
Confidence 5678888884
No 47
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=26.17 E-value=24 Score=40.27 Aligned_cols=99 Identities=10% Similarity=0.188 Sum_probs=55.9
Q ss_pred HHHHHHHHhhhcCCCeEecCCCCccCCCCCcceecccccccc--------ccccCCCCCCC----ccccccccccccccc
Q 003915 62 KVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYK--------PIFLGTADPNT----QLSKLTRACNTQKCI 129 (787)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~ssslvp~~dp~llf~nAGm~~fk--------p~flG~~~p~~----~~~~~~r~~~~QkCi 129 (787)
+|-+.+-+||.++|-..|..=-|.+.. ..|+.-+|. +++|-+++--. -.+.+.|+-..-+|.
T Consensus 181 ~i~~~iR~f~~~~gF~EVeTPiL~~~~------gGa~a~~F~t~~~~~~~~~yL~~SpqL~lk~liv~g~~rVyeig~~F 254 (521)
T 3bju_A 181 KIITYIRSFLDELGFLEIETPMMNIIP------GGAVAKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQF 254 (521)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESSC------CSSSCCCCEEEETTTTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEeCceeeccC------CCccccceeeecccCCcceEeeCCHHHHHHHHHhcCcCceEEEEcce
Confidence 455677789999998888664444421 112222221 34444331100 001245777788999
Q ss_pred ccCCCCCCCCCCCCCCCcchhhhhcc-cccccccc-----HHHHHHHHHHHc
Q 003915 130 RAGGKHNDLDDVGKDTYHHTFFEMLG-NWSFGDYF-----KNEAIEWAWELL 175 (787)
Q Consensus 130 R~gGkhnDld~VG~t~rHhTfFEMLG-nfSFgdYf-----K~eAi~~awe~L 175 (787)
|.- +++ .||..=|-||- -.+|.||- -++-|.++|+-+
T Consensus 255 R~E-------~~~--trH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v 297 (521)
T 3bju_A 255 RNE-------GID--LTHNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHI 297 (521)
T ss_dssp CCS-------CCB--TTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHH
T ss_pred eCC-------CCC--CccchhhhhhhhhhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 962 333 49998888875 56788873 344455555544
No 48
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=26.08 E-value=1.1e+02 Score=27.90 Aligned_cols=48 Identities=17% Similarity=0.144 Sum_probs=38.7
Q ss_pred cCCCCChHHHHHhhhcCCCChhhHHHHHHHcC----cccChhhHHHHHHHHH
Q 003915 453 QGKVLSGQDAFILWDTYGFPLDLTQLMAEERG----LLVDIEGFNNAMDEAR 500 (787)
Q Consensus 453 ~~~~isg~~af~LydTyGfP~dlt~~ia~e~g----l~vD~~~F~~~m~~~r 500 (787)
+.+.|+|++|-.++-.-|+|.+....|-+.-. =.+|.++|..+|.--.
T Consensus 45 ~dG~Isg~elr~~~~~sgLp~~~L~~Iw~laD~d~dG~Ld~~EF~~aM~Li~ 96 (121)
T 3fia_A 45 ISGFITGDQARNFFFQSGLPQPVLAQIWALADMNNDGRMDQVEFSIAMKLIK 96 (121)
T ss_dssp BTTBEEHHHHHHHHGGGCCCHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHH
T ss_pred CCCeECHHHHHHHHHHcCCCHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHH
Confidence 46799999999999999999998888876543 2578889999886543
No 49
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=26.01 E-value=24 Score=39.60 Aligned_cols=89 Identities=17% Similarity=0.351 Sum_probs=48.0
Q ss_pred HHHHHHHHhhhcCCCeEecCCCCccC---CCCCcceeccccccc-cccccCCCCC---CCcccccccccccccccccCCC
Q 003915 62 KVRDTFFKFFEDKNHVNWKSSPVVPV---NDPTLLFANAGMNQY-KPIFLGTADP---NTQLSKLTRACNTQKCIRAGGK 134 (787)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~ssslvp~---~dp~llf~nAGm~~f-kp~flG~~~p---~~~~~~~~r~~~~QkCiR~gGk 134 (787)
+|-+.+-+||.++|-..|..=-|.+. +--. +|. .+.| ++++|-+.+- ..-+..+.|+-..-+|.|..
T Consensus 161 ~i~~~iR~ff~~~gF~EVeTPiL~~s~~eGg~~-~f~---~~~~~~~~~L~~SpqL~lq~l~~g~~rVyeig~~FR~E-- 234 (456)
T 3m4p_A 161 EIQWYFRKYYHDNHFTEIQPPTIVKTQCEGGST-LFK---LQYFNEPAYLTQSSQLYLESVIASLGKSFCMLSSYRAE-- 234 (456)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEEC------CC-CCE---EEETTEEEEECSCCHHHHHTTHHHHSSEEEEEEEECCC--
T ss_pred HHHHHHHHHHHhCCCEEEeCCeeecCCCCCccc-ccc---ccccCCCcccccCHHHHHHHHHhccCcEEEEEhheecC--
Confidence 55566778999999888864333321 1111 121 1122 2344443321 00011246777788999962
Q ss_pred CCCCCCCCCCCCcchhhhhccc-cccccc
Q 003915 135 HNDLDDVGKDTYHHTFFEMLGN-WSFGDY 162 (787)
Q Consensus 135 hnDld~VG~t~rHhTfFEMLGn-fSFgdY 162 (787)
++ .|.||..=|-||-- .+|.||
T Consensus 235 --~~----~t~rH~pEFtmlE~e~af~d~ 257 (456)
T 3m4p_A 235 --QS----RTVRHLAEYLHLEAELPFISF 257 (456)
T ss_dssp --SC----CCSSCCSEEEEEEEEEESCCH
T ss_pred --CC----CCCcchHHHHHhHHHHhcCCH
Confidence 21 36899877777653 466676
No 50
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=25.30 E-value=22 Score=39.53 Aligned_cols=104 Identities=14% Similarity=0.201 Sum_probs=43.2
Q ss_pred hHHHHHHHHHhhhcCCCeEecCCCCccCC-CC--CcceeccccccccccccCCCCCCCc----ccccccccccccccccC
Q 003915 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPVN-DP--TLLFANAGMNQYKPIFLGTADPNTQ----LSKLTRACNTQKCIRAG 132 (787)
Q Consensus 60 ~~eiR~~Fl~fF~~~gH~~v~ssslvp~~-dp--~llf~nAGm~~fkp~flG~~~p~~~----~~~~~r~~~~QkCiR~g 132 (787)
-++|.+.+-+||.++|-..|..--|.+.. .+ +++-++.. =++++|-+. |.-. ...+.|+-..-+|.|.
T Consensus 128 rs~i~~~ir~~f~~~gF~EV~TPil~~~~~e~~~~~f~~~~~---g~~~~L~~S-pel~~~~l~~g~~rvf~ig~~FR~- 202 (422)
T 1n9w_A 128 QAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLFGVDYF---EKRAYLAQS-PQLYKQIMVGVFERVYEVAPVWRM- 202 (422)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCC--------------------------------CHHHHHHHHHHHSEEEEEEEC----
T ss_pred HHHHHHHHHHHHHHCCCEEEECCEEEEeCCCCCceeEEEeeC---CCcEEeeeC-HHHHHHHHhhCCCceeEEeCceEC-
Confidence 34677788899999999888754444321 11 12222210 022334211 1000 0113577788899996
Q ss_pred CCCCCCCCCCCCCCcchhhhhccc-cccc-cccHHHHHHHHHHHccc
Q 003915 133 GKHNDLDDVGKDTYHHTFFEMLGN-WSFG-DYFKNEAIEWAWELLTK 177 (787)
Q Consensus 133 GkhnDld~VG~t~rHhTfFEMLGn-fSFg-dYfK~eAi~~awe~Lt~ 177 (787)
+ +. .++||..=|-|++- .+|. || +|.+..+.+++..
T Consensus 203 ----E--~~-~~~RH~pEFtqle~e~~~~~d~--~dlm~l~e~ll~~ 240 (422)
T 1n9w_A 203 ----E--EH-HTSRHLNEYLSLDVEMGFIADE--EDLMRLEEALLAE 240 (422)
T ss_dssp -----------------CCEEEEEEEESCSSH--HHHHHHHHHHHHH
T ss_pred ----C--CC-CCCcccceeEEeeeeeeCCCCH--HHHHHHHHHHHHH
Confidence 2 22 25699977777764 4555 66 6677776666544
No 51
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=25.20 E-value=25 Score=40.38 Aligned_cols=88 Identities=16% Similarity=0.260 Sum_probs=48.1
Q ss_pred HHHHHHHHHhhhcCCCeEecCCCCccCCCCCcceecccccccc------ccccCCCCCCC----cccccccccccccccc
Q 003915 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQYK------PIFLGTADPNT----QLSKLTRACNTQKCIR 130 (787)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~ssslvp~~dp~llf~nAGm~~fk------p~flG~~~p~~----~~~~~~r~~~~QkCiR 130 (787)
++|-+.+-+||.++|-..|..--|.+. ++ .+|-..|+ +++|-+.+--. -.+.+.|+-..-+|.|
T Consensus 248 s~i~~~iR~ff~~~gF~EVeTPiL~~~-~~-----egga~~F~v~~~~~~~yL~~Spql~~k~ll~~g~~rVfeI~~~FR 321 (548)
T 3i7f_A 248 SACCGLFREFLTSQKFVEIHTPKLIGC-SS-----EGGSNIFEVKYFDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPVFR 321 (548)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSBC-------------------------CCBCSCTHHHHHHHHTTTCCEEEEEEEECC
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEecc-cC-----CCCcceeEEecCCCceEeccCHHHHHHHHHhcCcCcEEEEeeeEe
Confidence 355566779999999888876555542 11 23334442 33443321000 0012456667789999
Q ss_pred cCCCCCCCCCCCCCCCcchhhhhcccc-ccc-cc
Q 003915 131 AGGKHNDLDDVGKDTYHHTFFEMLGNW-SFG-DY 162 (787)
Q Consensus 131 ~gGkhnDld~VG~t~rHhTfFEMLGnf-SFg-dY 162 (787)
.. + . .|.||.+=|-||--. +|+ ||
T Consensus 322 ~E----~---~-~t~RHl~EFtmlE~e~af~~d~ 347 (548)
T 3i7f_A 322 AE----N---S-NTRRHLTEFEGLDIEMEIVENY 347 (548)
T ss_dssp CS----C---C-CSSSCCSCEEEEEEEEECSSCT
T ss_pred cC----C---C-CCCCcchhhhchhhhhhhhcCH
Confidence 62 2 2 368999889998764 787 56
No 52
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=24.96 E-value=26 Score=39.84 Aligned_cols=104 Identities=15% Similarity=0.271 Sum_probs=55.0
Q ss_pred HHHHHHHHHhhhcCCCeEecCCCCccC--CCCCcceeccccccc-cccccCCCCCCC----cccccccccccccccccCC
Q 003915 61 TKVRDTFFKFFEDKNHVNWKSSPVVPV--NDPTLLFANAGMNQY-KPIFLGTADPNT----QLSKLTRACNTQKCIRAGG 133 (787)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~ssslvp~--~dp~llf~nAGm~~f-kp~flG~~~p~~----~~~~~~r~~~~QkCiR~gG 133 (787)
+.|-+.+-+||.++|-..|..=-|.+. .-..=.|+-- .+.| ++++|-+++--. -.+.+.|+-..-+|.|.-
T Consensus 187 s~i~~~iR~f~~~~gFlEVeTPiL~~~~~Ga~ar~F~t~-~~~~~~~~yL~~SpqLylk~L~v~G~~rVyeIg~~FR~E- 264 (504)
T 1e1o_A 187 SKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITH-HNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNE- 264 (504)
T ss_dssp HHHHHHHHHHHHTTTCEECCCCSEESSCCSSCCCCCEEE-ETTTTEEEEECSCSHHHHHHHHHHTCCEEEEEEEEECCC-
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEecCCCCcccceEec-cCCCCceEEeccCHHHHHHHHhhcCCCcEEEEcccccCC-
Confidence 356667778999999888765444431 1000012110 0011 234443321000 001245677778999962
Q ss_pred CCCCCCCCCCCCCcchhhhhcc-ccccccccHHHHHHHHHHHcc
Q 003915 134 KHNDLDDVGKDTYHHTFFEMLG-NWSFGDYFKNEAIEWAWELLT 176 (787)
Q Consensus 134 khnDld~VG~t~rHhTfFEMLG-nfSFgdYfK~eAi~~awe~Lt 176 (787)
+. +.||..=|-||. -.+|.|| ++.+..+-+++.
T Consensus 265 ------~~--~~rH~pEFt~lE~e~af~d~--~dlm~l~E~li~ 298 (504)
T 1e1o_A 265 ------GI--SVRHNPEFTMMELYMAYADY--HDLIELTESLFR 298 (504)
T ss_dssp ------CC--CC-CCSEEEEEEEEEESCCH--HHHHHHHHHHHH
T ss_pred ------CC--CccccCceeeeeeeecCCCH--HHHHHHHHHHHH
Confidence 33 359999888887 4677787 555555555544
No 53
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=24.92 E-value=26 Score=40.12 Aligned_cols=100 Identities=21% Similarity=0.292 Sum_probs=55.8
Q ss_pred HHHHHHHHHhhhcCCCeEecCCCCccCCCCCcceeccccccc--------cccccCCCCCCC----cccccccccccccc
Q 003915 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQY--------KPIFLGTADPNT----QLSKLTRACNTQKC 128 (787)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~ssslvp~~dp~llf~nAGm~~f--------kp~flG~~~p~~----~~~~~~r~~~~QkC 128 (787)
++|-+.+-+||.++|-..|..=-|.+. | -.|..-+| ++.||-+++--. -.+.+.|+-..-+|
T Consensus 208 s~i~~~iR~ff~~~gFlEVeTPiL~~~--~----gGA~a~pF~t~~n~~~~~~yL~~SpqLylk~L~v~G~~rVyeIg~~ 281 (529)
T 4ex5_A 208 TKAIASIRKFMGDADFMEVETPMLHPI--P----GGAAAKPFVTHHNALDMEMFLRIAPELYLKRLIVGGFERVFEINRN 281 (529)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESS--C----CSSSSCCCEEEETTTTEEEEECSCSHHHHHHHHHTTCSEEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeecc--C----CCCcccccccccccCCcceecccCHHHHHHHHHhcCCCcEEEeehh
Confidence 356667779999999888865444431 1 11222233 233443321100 00124677778899
Q ss_pred cccCCCCCCCCCCCCCCCcchhhhhcc-cccccccc-----HHHHHHHHHHHc
Q 003915 129 IRAGGKHNDLDDVGKDTYHHTFFEMLG-NWSFGDYF-----KNEAIEWAWELL 175 (787)
Q Consensus 129 iR~gGkhnDld~VG~t~rHhTfFEMLG-nfSFgdYf-----K~eAi~~awe~L 175 (787)
.|.- +. +.||..=|-||- -.+|.||- -++-|.++|.-+
T Consensus 282 FR~E-------~~--~~rH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v 325 (529)
T 4ex5_A 282 FRNE-------GV--SPRHNPEFTMMEFYAAYTDYRWLMDFTERLIRQAAVDA 325 (529)
T ss_dssp ECCS-------CC--BTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHH
T ss_pred eecC-------CC--CCCcccHhHhhhhhhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 9962 33 369998888875 35677872 244445555443
No 54
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=24.86 E-value=26 Score=39.68 Aligned_cols=105 Identities=12% Similarity=0.254 Sum_probs=58.0
Q ss_pred HHHHHHHHHhhhcCCCeEecCCCCccC--CCCCcceeccccccc-cccccCCCCCCC----cccccccccccccccccCC
Q 003915 61 TKVRDTFFKFFEDKNHVNWKSSPVVPV--NDPTLLFANAGMNQY-KPIFLGTADPNT----QLSKLTRACNTQKCIRAGG 133 (787)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~ssslvp~--~dp~llf~nAGm~~f-kp~flG~~~p~~----~~~~~~r~~~~QkCiR~gG 133 (787)
+.|-+.+-+||.++|-..|..--|.+. ....-.|+-- .+.| ++++|-+++--. -.+.+.|+-..-+|.|.-
T Consensus 178 s~i~~~iR~ff~~~gF~EVeTPiL~~~~~Ga~a~~F~~~-~~~~~~~~yLr~SpqLylk~l~v~G~~rVyeig~~FR~E- 255 (493)
T 3a74_A 178 SLIIQSMRRYLDSHGYLEVETPMMHAVAGGAAARPFITH-HNALDMTLYMRIAIELHLKRLIVGGLEKVYEIGRVFRNE- 255 (493)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESSCCSSSSCCCEEE-ETTTTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEECCC-
T ss_pred HHHHHHHHHHHHhCCeEEEECCeEEecCCCCcccceEec-ccCCCceeEEecCHHHHHHHHhhcccCceEEECccccCC-
Confidence 456677888999999888865444432 1000112110 0001 233443321000 001245677778999962
Q ss_pred CCCCCCCCCCCCCcchhhhhcc-ccccccccHHHHHHHHHHHccc
Q 003915 134 KHNDLDDVGKDTYHHTFFEMLG-NWSFGDYFKNEAIEWAWELLTK 177 (787)
Q Consensus 134 khnDld~VG~t~rHhTfFEMLG-nfSFgdYfK~eAi~~awe~Lt~ 177 (787)
+. +.||..=|-||. -.+|.|| +|.+..+-+++..
T Consensus 256 ------~~--~~rH~pEFT~lE~e~af~d~--~dlm~l~E~ll~~ 290 (493)
T 3a74_A 256 ------GI--STRHNPEFTMLELYEAYADF--RDIMKLTENLIAH 290 (493)
T ss_dssp ------CC--BTTBCSEEEEEEEEEETCCH--HHHHHHHHHHHHH
T ss_pred ------CC--CcccCCceeEEEEEecCCCH--HHHHHHHHHHHHH
Confidence 33 359999888887 5677787 5566666666543
No 55
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=24.71 E-value=27 Score=38.93 Aligned_cols=105 Identities=14% Similarity=0.060 Sum_probs=57.6
Q ss_pred hHHHHHHHHHhhhcCCCeEecCCCCccC-CCC--CcceeccccccccccccCCCCC---CCcccccccccccccccccCC
Q 003915 60 ATKVRDTFFKFFEDKNHVNWKSSPVVPV-NDP--TLLFANAGMNQYKPIFLGTADP---NTQLSKLTRACNTQKCIRAGG 133 (787)
Q Consensus 60 ~~eiR~~Fl~fF~~~gH~~v~ssslvp~-~dp--~llf~nAGm~~fkp~flG~~~p---~~~~~~~~r~~~~QkCiR~gG 133 (787)
-+.|-+.+-+||.++|-..|..--+.+. ..+ .++=|+.+ =++++|-+.+- ..-.+.+.|+-..-+|.|.
T Consensus 138 rs~i~~~ir~~f~~~gF~eVeTP~l~~~~~e~~~~~f~~~~~---~~~~~Lr~Spel~~~~~~~g~~rvf~ig~~FR~-- 212 (434)
T 1x54_A 138 KETLIMAAREWLLKDGWHEVFPPILVTGAVEGGATLFKLKYF---DKYAYLSQSAQLYLEAAIFGLEKVWSLTPSFRA-- 212 (434)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEESCCSSCGGGCCEEEET---TEEEEECSCSHHHHHHHHHHHSEEEEEEEEECC--
T ss_pred HHHHHHHHHHHHHHCCCEEEeCcEEEeecCCCCceeEEEeec---CCcEEeccChHHHHHHHhcCccceEEEecceec--
Confidence 3456678889999999988876555442 122 11112110 02234432210 0000123578888899996
Q ss_pred CCCCCCCCCCCCCcchhhhhccc-cccccccHHHHHHHHHHHccc
Q 003915 134 KHNDLDDVGKDTYHHTFFEMLGN-WSFGDYFKNEAIEWAWELLTK 177 (787)
Q Consensus 134 khnDld~VG~t~rHhTfFEMLGn-fSFgdYfK~eAi~~awe~Lt~ 177 (787)
+ +. .++||..=|-|++- .+|.|| +|.+..+.+++..
T Consensus 213 ---E--~~-~~~RH~pEFtqle~e~~~~~~--~dlm~~~e~ll~~ 249 (434)
T 1x54_A 213 ---E--KS-RTRRHLTEFWHLELEAAWMDL--WDIMKVEEELVSY 249 (434)
T ss_dssp ---C--CC-CCSSCCSEEEEEEEEEETCCH--HHHHHHHHHHHHH
T ss_pred ---C--CC-CCcccccEEEEeeEEEcCCCH--HHHHHHHHHHHHH
Confidence 3 11 24689877777663 445565 6666666666543
No 56
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=24.60 E-value=26 Score=38.94 Aligned_cols=100 Identities=16% Similarity=0.197 Sum_probs=52.5
Q ss_pred HHHHHHHHhhhcCCCeEecCCCCcc---CCCCCcceeccccccc-cccccCCCCC---CCcccccccccccccccccCCC
Q 003915 62 KVRDTFFKFFEDKNHVNWKSSPVVP---VNDPTLLFANAGMNQY-KPIFLGTADP---NTQLSKLTRACNTQKCIRAGGK 134 (787)
Q Consensus 62 eiR~~Fl~fF~~~gH~~v~ssslvp---~~dp~llf~nAGm~~f-kp~flG~~~p---~~~~~~~~r~~~~QkCiR~gGk 134 (787)
+|-+.+-+||.++|-..|..=-|.+ .+--.++-+|+ | ++++|-+.+- ..-+..+.|+-..-+|.|..
T Consensus 137 ~i~~~iR~ff~~~gFlEVeTPiL~~s~~eG~~~~F~~~~----~g~~~~L~~SpqLylq~l~~g~~rvfeIg~~FR~E-- 210 (435)
T 2xgt_A 137 AATRAMREHFYNAGYVEVAPPTLVQTQVEGGSTLFNLDY----FGEQSFLTQSSQLYLETCIPTLGDVFCIAQSYRAE-- 210 (435)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEESCCSSCTTSCCEEEE----TTEEEEECSCSHHHHHHHHHHHCSEEEEEEEECCC--
T ss_pred HHHHHHHHHHHHCCCEEEECCeEeeccCCCchhceeecc----CCcccccCCChHHHHHHhhhccCceEEEecceecC--
Confidence 4555677899999988775432322 22112222221 1 2333433210 00011245777888999962
Q ss_pred CCCCCCCCCCCCcchhhhhcc-ccccccccHHHHHHHHHHHc
Q 003915 135 HNDLDDVGKDTYHHTFFEMLG-NWSFGDYFKNEAIEWAWELL 175 (787)
Q Consensus 135 hnDld~VG~t~rHhTfFEMLG-nfSFgdYfK~eAi~~awe~L 175 (787)
|+ .|.||..=|-||. -.+|.|| ++.++.+-+++
T Consensus 211 --~~----~t~RH~~EFT~lE~e~af~d~--~d~m~~~E~li 244 (435)
T 2xgt_A 211 --KS----RTRRHLAEYAHVEAECPFITL--DDLMEKIEELV 244 (435)
T ss_dssp --SS----CCTTCCSEEEEEEEEEESCCH--HHHHHHHHHHH
T ss_pred --CC----CccccccceeEEEEEEecCCH--HHHHHHHHHHH
Confidence 32 3579997777765 4567776 44444444443
No 57
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=23.65 E-value=28 Score=39.30 Aligned_cols=100 Identities=19% Similarity=0.306 Sum_probs=58.6
Q ss_pred HHHHHHHHHhhhcCCCeEecCCCCccCCCCCcceeccccccc------cccccCCCCCC--Ccc--cccccccccccccc
Q 003915 61 TKVRDTFFKFFEDKNHVNWKSSPVVPVNDPTLLFANAGMNQY------KPIFLGTADPN--TQL--SKLTRACNTQKCIR 130 (787)
Q Consensus 61 ~eiR~~Fl~fF~~~gH~~v~ssslvp~~dp~llf~nAGm~~f------kp~flG~~~p~--~~~--~~~~r~~~~QkCiR 130 (787)
+.|-+.+-+||.++|...|..--|.+.. +.+|-..| ++++|-+.+-- --+ +.+.|+-..-+|.|
T Consensus 182 s~i~~~ir~~~~~~gF~EV~TPil~~~~------~~~ga~~f~~~~~~~~~~L~~Spql~~k~l~~~g~~rvy~ig~~FR 255 (487)
T 1eov_A 182 AGVCELFREYLATKKFTEVHTPKLLGAP------SEGGSSVFEVTYFKGKAYLAQSPQFNKQQLIVADFERVYEIGPVFR 255 (487)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESSC------SSSSSCCCEEEETTEEEEECSCTHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred HHHHHHHHHHHHhCCcEEEeCCEEEEec------CCCCcccceeccCCccEEcccChHHHHHHHHhcCCCceEEEeccEe
Confidence 3556667889999998888655454421 11122222 23444322100 000 12456777789999
Q ss_pred cCCCCCCCCCCCCCCCcchhhhhccc-cccc-cccHHHHHHHHHHHcc
Q 003915 131 AGGKHNDLDDVGKDTYHHTFFEMLGN-WSFG-DYFKNEAIEWAWELLT 176 (787)
Q Consensus 131 ~gGkhnDld~VG~t~rHhTfFEMLGn-fSFg-dYfK~eAi~~awe~Lt 176 (787)
.. +. .|+||..=|-||+- .||| || +|.++.+-+++.
T Consensus 256 ~E-------~~-~~~Rh~pEFt~le~e~af~~~~--~dlm~l~E~ll~ 293 (487)
T 1eov_A 256 AE-------NS-NTHRHMTEFTGLDMEMAFEEHY--HEVLDTLSELFV 293 (487)
T ss_dssp CC-------CC-CCTTCCSEEEEEEEEEECSSCT--HHHHHHHHHHHH
T ss_pred cC-------CC-CCCccchhhhhhhhhhhhhcCH--HHHHHHHHHHHH
Confidence 62 22 36899988999987 7898 57 566666655544
No 58
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=23.48 E-value=1e+02 Score=27.08 Aligned_cols=46 Identities=13% Similarity=0.113 Sum_probs=37.6
Q ss_pred CCCCChHHHHHhhhcCCCChhhHHHHHHHcCc----ccChhhHHHHHHHH
Q 003915 454 GKVLSGQDAFILWDTYGFPLDLTQLMAEERGL----LVDIEGFNNAMDEA 499 (787)
Q Consensus 454 ~~~isg~~af~LydTyGfP~dlt~~ia~e~gl----~vD~~~F~~~m~~~ 499 (787)
.+.|+.+++-.+.-+.|++-+.+.+|.++... .||.++|..+|...
T Consensus 36 dG~Is~~el~~~l~~~gl~~~el~~i~~~~D~d~dG~I~~~EF~~~m~~~ 85 (110)
T 1iq3_A 36 SSFISGSVAKNFFTKSKLSIPELSYIWELSDADCDGALTLPEFCAAFHLI 85 (110)
T ss_dssp SSEEEHHHHHHHCCSSSCSSCCHHHHHHHHCSSSCSEEEHHHHHHHHHHH
T ss_pred CCeEcHHHHHHHHHHcCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHH
Confidence 57899999999999999998888888776433 48888999988754
No 59
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=22.93 E-value=1.2e+02 Score=25.26 Aligned_cols=46 Identities=13% Similarity=0.178 Sum_probs=36.7
Q ss_pred CCCCChHHHHHhhhcCCCChhhHHHHHHHcCc----ccChhhHHHHHHHH
Q 003915 454 GKVLSGQDAFILWDTYGFPLDLTQLMAEERGL----LVDIEGFNNAMDEA 499 (787)
Q Consensus 454 ~~~isg~~af~LydTyGfP~dlt~~ia~e~gl----~vD~~~F~~~m~~~ 499 (787)
.+.|+.+++-.+..+.|+|.+-+.+|.++... .||.++|..+|...
T Consensus 23 dG~I~~~el~~~l~~~g~~~~~~~~i~~~~D~d~dG~i~~~EF~~~~~~~ 72 (92)
T 1fi6_A 23 NGFIPGSAAKEFFTKSKLPILELSHIWELSDFDKDGALTLDEFCAAFHLV 72 (92)
T ss_dssp TCEEEHHHHHHHHHHHSSCHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHH
T ss_pred CCcCcHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Confidence 46899999999999899998888887765433 47788898888654
No 60
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=22.88 E-value=43 Score=26.52 Aligned_cols=30 Identities=7% Similarity=-0.181 Sum_probs=25.2
Q ss_pred cHHHHHHHHHHHcccccCCCCCceEEEEEC
Q 003915 163 FKNEAIEWAWELLTKVYRLPADRLYATYFG 192 (787)
Q Consensus 163 fK~eAi~~awe~Lt~~lgl~~~rL~vT~~~ 192 (787)
-|++-++-.-+.|.+.||+|++.+||.+.+
T Consensus 15 qk~~L~~~it~~~~~~lg~p~~~v~V~i~e 44 (65)
T 3ry0_A 15 EVAALGEALTAAAHETLGTPVEAVRVIVEE 44 (65)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 366667777888889999999999999865
No 61
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=21.75 E-value=60 Score=36.66 Aligned_cols=28 Identities=21% Similarity=0.420 Sum_probs=23.4
Q ss_pred CccccCchHHHHHHHHhCCCCCcccccc
Q 003915 288 KHVDTGLGFERLTSILQNKMSNYDTDVF 315 (787)
Q Consensus 288 ~~IDTGmGlERl~~vlqg~~snydtD~F 315 (787)
+|=--|+|+|||+++|-|.+|.=|+=+|
T Consensus 451 PhgG~glGiDRLvmll~g~~~IRdVi~F 478 (487)
T 1eov_A 451 PHAGGGIGLERVVMFYLDLKNIRRASLF 478 (487)
T ss_dssp CEEEEEEEHHHHHHHHTTCSSGGGGCSS
T ss_pred CCeEEEEhHHHHHHHHcCCCcHHheeec
Confidence 5667799999999999999998776444
No 62
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=21.74 E-value=2.2e+02 Score=24.54 Aligned_cols=18 Identities=17% Similarity=0.154 Sum_probs=12.1
Q ss_pred CCCCChHHHHHhhhcCCC
Q 003915 454 GKVLSGQDAFILWDTYGF 471 (787)
Q Consensus 454 ~~~isg~~af~LydTyGf 471 (787)
.+.|+.++.-.+..++|.
T Consensus 99 ~G~i~~~el~~~l~~~g~ 116 (149)
T 2mys_C 99 NGTVMGAELRHVLATLGE 116 (149)
T ss_pred CceEcHHHHHHHHHHhCC
Confidence 456777777777766663
No 63
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=21.18 E-value=18 Score=40.21 Aligned_cols=30 Identities=27% Similarity=0.250 Sum_probs=24.5
Q ss_pred CCCCccccCchHHHHHHHHhCCCCCcccccc
Q 003915 285 LPAKHVDTGLGFERLTSILQNKMSNYDTDVF 315 (787)
Q Consensus 285 Lp~~~IDTGmGlERl~~vlqg~~snydtD~F 315 (787)
+| +|---|+|+|||++++-|.+|.=|.=+|
T Consensus 396 ~P-P~~G~glGiDRLvmll~g~~~Irdvi~F 425 (434)
T 1x54_A 396 SV-PHSGFGLGVERLVAWVLKLDHIRWAALF 425 (434)
T ss_dssp CC-CEEEEEEEHHHHHHHHTTCSSGGGGSSS
T ss_pred CC-CceEEEEcHHHHHHHHcCCCcHHhEEEc
Confidence 44 6778899999999999999887666444
No 64
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=21.18 E-value=33 Score=39.65 Aligned_cols=32 Identities=28% Similarity=0.416 Sum_probs=26.2
Q ss_pred CCCCccccCchHHHHHHHHhCCCCCccccccHH
Q 003915 285 LPAKHVDTGLGFERLTSILQNKMSNYDTDVFMP 317 (787)
Q Consensus 285 Lp~~~IDTGmGlERl~~vlqg~~snydtD~F~p 317 (787)
+| +|=--|+|||||+++|-|.+|.=|.=.|..
T Consensus 525 ~P-PhgG~glGlDRLvmlltg~~sIRdVi~FPr 556 (585)
T 1c0a_A 525 TP-PHAGLAFGLDRLTMLLTGTDNIRDVIAFPK 556 (585)
T ss_dssp CC-CEEEEEEEHHHHHHHHHTCSCGGGGSSSCC
T ss_pred CC-CceeEEEcHHHHHHHHcCCCcHHheecCCC
Confidence 44 577789999999999999999888755543
No 65
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=20.83 E-value=35 Score=39.50 Aligned_cols=29 Identities=21% Similarity=0.301 Sum_probs=24.9
Q ss_pred CccccCchHHHHHHHHhCCCCCccccccH
Q 003915 288 KHVDTGLGFERLTSILQNKMSNYDTDVFM 316 (787)
Q Consensus 288 ~~IDTGmGlERl~~vlqg~~snydtD~F~ 316 (787)
+|=--|+|||||+++|-|.+|.=|.=.|.
T Consensus 521 PhgG~glGlDRLvMll~g~~sIRdVi~FP 549 (580)
T 1l0w_A 521 PHGGIAWGLDRLLALMTGSPSIREVIAFP 549 (580)
T ss_dssp CEEEEEEEHHHHHHHHHTCSSGGGGSSSC
T ss_pred CCceEEEcHHHHHHHHcCCCcHHeEecCC
Confidence 57778999999999999999988875554
Done!