BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 003918
         (786 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2OOE|A Chain A, Crystal Structure Of Hat Domain Of Murine Cstf-77
          Length = 530

 Score = 37.7 bits (86), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 66/175 (37%), Gaps = 45/175 (25%)

Query: 23  NPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYL-----------IER- 70
           NP+ L  W   +   +  P  K    YER +   P S + W  Y+           +E+ 
Sbjct: 9   NPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKL 68

Query: 71  -----------------LSIVKNLPITHPEY-ETLNNTFERAL--VTMHKMP-RIWIMYL 109
                            LS V+      P Y E +   ++ AL  + M  M  +IW+ Y+
Sbjct: 69  FQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYI 128

Query: 110 ETLTS---------QKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPI 155
             L            + IT  RR + R  C  P+   +++W  Y ++  +EGI I
Sbjct: 129 NFLKGVEAVGSYAENQRITAVRRVYQRG-CVNPMINIEQLWRDYNKY--EEGINI 180


>pdb|1KZH|A Chain A, Structure Of A Pyrophosphate-dependent Phosphofructokinase
           From The Lyme Disease Spirochete Borrelia Burgdorferi
 pdb|1KZH|B Chain B, Structure Of A Pyrophosphate-dependent Phosphofructokinase
           From The Lyme Disease Spirochete Borrelia Burgdorferi
 pdb|2F48|A Chain A, Crystal Structure Of A Novel Fructose 1,6-Bisphosphate And
           Alf3 Containing Pyrophosphate-Dependent
           Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi
 pdb|2F48|B Chain B, Crystal Structure Of A Novel Fructose 1,6-Bisphosphate And
           Alf3 Containing Pyrophosphate-Dependent
           Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi
          Length = 555

 Score = 33.1 bits (74), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 14/100 (14%)

Query: 178 EFLVKSKLWQEAAERLASV-----LNDDQFYSI---KGKTK-----HRLWLELCDLLTTH 224
           E L K K   E  + + SV     LN D F  +   +G  +       L LELCD+   +
Sbjct: 276 EVLAKKKTLSEIIDEMVSVILKRSLNGDNFGVVIVPEGLIEFIPEVKSLMLELCDIFDKN 335

Query: 225 ATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRREL 264
             E  GLN++ +    + K +D +  ++ SL   +I+ EL
Sbjct: 336 EGEFKGLNIEKMKEIFVAKLSDYMKGVYLSLP-LFIQFEL 374


>pdb|3NME|A Chain A, Structure Of A Plant Phosphatase
 pdb|3NME|B Chain B, Structure Of A Plant Phosphatase
          Length = 294

 Score = 30.8 bits (68), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 19/74 (25%), Positives = 31/74 (41%)

Query: 404 LTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASI 463
           +TY  +        AV   +  WV   KL E +K + + R  F K   +   T+D L  +
Sbjct: 108 VTYVHSTAGXGRAPAVALTYXFWVQGYKLXEAHKLLXSKRSCFPKLDAIRNATIDILTGL 167

Query: 464 WCEWAEMELRHKNF 477
             +   + L+ K F
Sbjct: 168 KRKTVTLTLKDKGF 181


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.137    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,163,571
Number of Sequences: 62578
Number of extensions: 910907
Number of successful extensions: 2309
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2300
Number of HSP's gapped (non-prelim): 14
length of query: 786
length of database: 14,973,337
effective HSP length: 107
effective length of query: 679
effective length of database: 8,277,491
effective search space: 5620416389
effective search space used: 5620416389
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)