Query 003918
Match_columns 786
No_of_seqs 290 out of 3600
Neff 10.4
Searched_HMMs 46136
Date Thu Mar 28 14:18:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003918.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003918hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2047 mRNA splicing factor [ 100.0 1.1E-83 2.3E-88 648.5 75.9 735 1-774 1-736 (835)
2 KOG1915 Cell cycle control pro 100.0 3.3E-45 7.1E-50 357.8 50.8 502 44-652 57-584 (677)
3 KOG0495 HAT repeat protein [RN 100.0 2E-42 4.3E-47 350.6 59.7 608 10-766 268-882 (913)
4 TIGR02917 PEP_TPR_lipo putativ 100.0 3.9E-39 8.5E-44 388.1 78.7 676 11-770 143-838 (899)
5 TIGR02917 PEP_TPR_lipo putativ 100.0 2.9E-39 6.2E-44 389.3 75.9 645 10-758 244-896 (899)
6 KOG0495 HAT repeat protein [RN 100.0 6.2E-35 1.3E-39 296.4 56.7 578 40-766 265-848 (913)
7 KOG1915 Cell cycle control pro 100.0 3.5E-35 7.6E-40 287.7 49.5 454 88-757 59-531 (677)
8 PRK11447 cellulose synthase su 100.0 2.6E-34 5.7E-39 346.0 68.3 604 37-759 39-737 (1157)
9 KOG2047 mRNA splicing factor [ 100.0 1.4E-34 3.1E-39 293.5 47.8 545 11-683 44-717 (835)
10 PRK11447 cellulose synthase su 100.0 4E-32 8.7E-37 327.2 68.3 543 82-758 42-696 (1157)
11 KOG4626 O-linked N-acetylgluco 100.0 2E-34 4.2E-39 291.0 38.3 434 105-731 51-489 (966)
12 KOG4626 O-linked N-acetylgluco 100.0 4.3E-34 9.3E-39 288.5 37.9 434 82-707 62-500 (966)
13 KOG2002 TPR-containing nuclear 100.0 5.9E-31 1.3E-35 280.4 53.6 622 42-777 110-760 (1018)
14 KOG2002 TPR-containing nuclear 100.0 8.3E-30 1.8E-34 271.7 53.7 572 10-730 147-748 (1018)
15 PRK09782 bacteriophage N4 rece 100.0 6.3E-28 1.4E-32 276.9 68.4 613 39-770 57-714 (987)
16 PRK09782 bacteriophage N4 rece 100.0 3.9E-27 8.4E-32 270.5 65.2 623 11-756 62-734 (987)
17 PLN03077 Protein ECB2; Provisi 100.0 7.3E-27 1.6E-31 275.4 61.2 608 15-765 73-723 (857)
18 TIGR00990 3a0801s09 mitochondr 100.0 6.5E-27 1.4E-31 265.2 51.0 261 435-726 306-571 (615)
19 TIGR00990 3a0801s09 mitochondr 100.0 1.4E-26 3E-31 262.5 52.5 423 82-656 141-574 (615)
20 PLN03077 Protein ECB2; Provisi 100.0 2.3E-25 4.9E-30 262.8 56.9 587 28-756 52-680 (857)
21 PLN03081 pentatricopeptide (PP 99.9 1.3E-23 2.8E-28 241.9 49.3 463 103-764 88-559 (697)
22 PRK10049 pgaA outer membrane p 99.9 1.3E-23 2.9E-28 242.2 48.1 445 16-621 5-460 (765)
23 PRK15174 Vi polysaccharide exp 99.9 4.6E-23 1E-27 232.6 45.2 346 38-582 54-407 (656)
24 PRK10049 pgaA outer membrane p 99.9 1.2E-22 2.7E-27 234.2 47.8 433 54-661 9-464 (765)
25 PLN03218 maturation of RBCL 1; 99.9 7E-21 1.5E-25 220.7 60.3 524 85-766 354-913 (1060)
26 PLN03081 pentatricopeptide (PP 99.9 1.9E-22 4.1E-27 232.3 47.4 463 62-726 89-557 (697)
27 KOG2076 RNA polymerase III tra 99.9 5.6E-20 1.2E-24 196.1 58.1 618 14-757 160-890 (895)
28 PRK15174 Vi polysaccharide exp 99.9 2.3E-22 5E-27 227.0 42.9 315 372-730 63-384 (656)
29 PLN03218 maturation of RBCL 1; 99.9 2.8E-20 6E-25 215.7 57.4 339 397-775 486-854 (1060)
30 KOG1914 mRNA cleavage and poly 99.9 2E-20 4.3E-25 187.9 46.4 220 533-758 263-497 (656)
31 KOG0547 Translocase of outer m 99.9 9.2E-21 2E-25 188.0 39.4 226 395-656 338-569 (606)
32 KOG0547 Translocase of outer m 99.9 1.9E-20 4.1E-25 185.8 37.3 234 462-726 327-566 (606)
33 KOG1155 Anaphase-promoting com 99.9 6.2E-19 1.3E-23 174.2 41.2 200 423-653 330-536 (559)
34 PRK11788 tetratricopeptide rep 99.9 1.4E-19 3.1E-24 195.0 39.0 301 425-760 37-345 (389)
35 PRK11788 tetratricopeptide rep 99.9 4.5E-19 9.8E-24 191.2 37.7 296 391-725 43-346 (389)
36 KOG2076 RNA polymerase III tra 99.9 1.4E-16 3.1E-21 170.3 54.8 595 39-757 152-844 (895)
37 PRK14574 hmsH outer membrane p 99.9 7.9E-17 1.7E-21 182.1 52.9 463 53-695 27-518 (822)
38 PRK14574 hmsH outer membrane p 99.9 5.7E-17 1.2E-21 183.2 50.7 462 23-622 30-518 (822)
39 KOG1126 DNA-binding cell divis 99.9 1.2E-19 2.6E-24 188.0 25.6 290 398-730 334-623 (638)
40 KOG1126 DNA-binding cell divis 99.9 2E-19 4.4E-24 186.3 26.3 222 402-659 405-626 (638)
41 KOG2003 TPR repeat-containing 99.9 7.4E-18 1.6E-22 165.5 35.0 484 82-748 215-709 (840)
42 KOG1127 TPR repeat-containing 99.8 1.7E-16 3.6E-21 170.4 46.5 581 15-689 480-1104(1238)
43 KOG1914 mRNA cleavage and poly 99.8 3.4E-17 7.3E-22 165.0 37.8 417 17-579 10-502 (656)
44 KOG1155 Anaphase-promoting com 99.8 5.4E-17 1.2E-21 160.6 36.3 291 397-725 241-535 (559)
45 KOG2396 HAT (Half-A-TPR) repea 99.8 4.2E-16 9E-21 156.2 38.4 476 9-579 33-560 (568)
46 KOG2003 TPR repeat-containing 99.8 7.4E-17 1.6E-21 158.5 32.4 230 398-668 471-702 (840)
47 PF13429 TPR_15: Tetratricopep 99.8 1.5E-19 3.3E-24 184.3 14.1 265 426-726 11-277 (280)
48 PF13429 TPR_15: Tetratricopep 99.8 2.1E-19 4.5E-24 183.3 14.9 258 466-757 13-272 (280)
49 KOG1258 mRNA processing protei 99.8 1.5E-14 3.3E-19 149.6 46.8 434 17-638 22-489 (577)
50 KOG1173 Anaphase-promoting com 99.8 4.4E-15 9.5E-20 151.2 40.7 426 82-621 63-522 (611)
51 KOG1127 TPR repeat-containing 99.8 8.6E-15 1.9E-19 157.4 44.9 595 39-768 471-1110(1238)
52 KOG1173 Anaphase-promoting com 99.8 2.4E-15 5.3E-20 153.0 38.4 275 421-730 242-521 (611)
53 TIGR00540 hemY_coli hemY prote 99.8 6.3E-16 1.4E-20 165.8 36.5 298 428-757 89-394 (409)
54 COG2956 Predicted N-acetylgluc 99.8 7.5E-16 1.6E-20 145.9 31.0 316 433-779 45-369 (389)
55 COG5107 RNA14 Pre-mRNA 3'-end 99.8 1.5E-14 3.2E-19 142.7 40.3 265 462-766 262-535 (660)
56 TIGR00540 hemY_coli hemY prote 99.8 3.5E-15 7.6E-20 160.1 36.3 295 390-726 91-399 (409)
57 KOG1070 rRNA processing protei 99.7 1.3E-15 2.9E-20 168.7 27.7 252 440-719 1441-1693(1710)
58 PRK10747 putative protoheme IX 99.7 2E-14 4.4E-19 153.3 35.8 286 433-757 94-385 (398)
59 PRK12370 invasion protein regu 99.7 1.7E-15 3.8E-20 168.6 28.7 251 437-726 275-535 (553)
60 KOG0624 dsRNA-activated protei 99.7 2.2E-13 4.8E-18 130.0 38.1 344 382-757 69-451 (504)
61 PRK10747 putative protoheme IX 99.7 1.9E-14 4.1E-19 153.5 35.0 291 391-727 92-391 (398)
62 KOG1174 Anaphase-promoting com 99.7 9.1E-14 2E-18 135.9 34.8 312 390-746 203-518 (564)
63 PRK12370 invasion protein regu 99.7 4.4E-15 9.5E-20 165.4 29.7 269 380-689 251-535 (553)
64 KOG4162 Predicted calmodulin-b 99.7 8.3E-13 1.8E-17 139.6 43.7 306 378-733 471-789 (799)
65 KOG4162 Predicted calmodulin-b 99.7 1.5E-13 3.2E-18 145.2 37.9 431 28-578 323-783 (799)
66 COG3063 PilF Tfp pilus assembl 99.7 5.2E-15 1.1E-19 134.4 23.4 204 424-658 36-241 (250)
67 KOG0548 Molecular co-chaperone 99.7 6.6E-14 1.4E-18 142.3 33.4 479 79-730 13-491 (539)
68 COG3063 PilF Tfp pilus assembl 99.7 8.5E-15 1.9E-19 133.0 24.1 206 461-694 35-240 (250)
69 PRK11189 lipoprotein NlpI; Pro 99.7 2.9E-14 6.3E-19 145.5 28.9 241 474-748 39-286 (296)
70 COG5107 RNA14 Pre-mRNA 3'-end 99.7 5.3E-13 1.1E-17 131.9 35.8 138 7-153 22-211 (660)
71 KOG0624 dsRNA-activated protei 99.7 1.8E-13 3.9E-18 130.6 31.4 323 380-730 33-373 (504)
72 PRK11189 lipoprotein NlpI; Pro 99.7 2.6E-14 5.5E-19 145.9 26.9 152 399-577 42-193 (296)
73 TIGR02521 type_IV_pilW type IV 99.7 4E-14 8.6E-19 140.7 26.4 201 422-653 30-232 (234)
74 KOG1129 TPR repeat-containing 99.7 1.4E-14 3E-19 137.2 21.4 279 382-693 178-461 (478)
75 KOG0548 Molecular co-chaperone 99.7 7.1E-13 1.5E-17 134.9 34.2 442 38-649 14-485 (539)
76 TIGR02521 type_IV_pilW type IV 99.6 7.9E-14 1.7E-18 138.5 26.9 202 461-689 31-232 (234)
77 KOG1174 Anaphase-promoting com 99.6 4.2E-12 9.1E-17 124.4 35.8 298 428-763 203-501 (564)
78 KOG1156 N-terminal acetyltrans 99.6 1.2E-10 2.6E-15 121.1 48.1 513 81-772 20-552 (700)
79 KOG1125 TPR repeat-containing 99.6 5.4E-14 1.2E-18 144.1 23.0 260 465-755 289-564 (579)
80 COG2956 Predicted N-acetylgluc 99.6 4.1E-12 8.9E-17 120.9 33.6 278 390-707 42-325 (389)
81 KOG1070 rRNA processing protei 99.6 1.8E-13 3.8E-18 152.2 28.2 255 403-689 1444-1700(1710)
82 KOG1129 TPR repeat-containing 99.6 4.7E-14 1E-18 133.7 19.2 227 397-659 237-464 (478)
83 KOG1156 N-terminal acetyltrans 99.6 2.2E-11 4.9E-16 126.4 37.2 361 358-757 14-463 (700)
84 KOG2396 HAT (Half-A-TPR) repea 99.6 6.6E-10 1.4E-14 112.4 46.3 130 43-175 35-176 (568)
85 KOG1125 TPR repeat-containing 99.6 2E-13 4.4E-18 139.9 21.8 234 384-656 285-530 (579)
86 KOG1258 mRNA processing protei 99.6 2.6E-10 5.6E-15 118.7 43.5 502 49-755 21-537 (577)
87 PLN02789 farnesyltranstransfer 99.5 3E-12 6.4E-17 130.0 26.7 197 433-658 47-255 (320)
88 PLN02789 farnesyltranstransfer 99.5 2.9E-12 6.4E-17 130.0 25.7 205 397-636 51-267 (320)
89 KOG1840 Kinesin light chain [C 99.5 5.3E-12 1.2E-16 133.6 27.9 250 462-725 200-478 (508)
90 cd05804 StaR_like StaR_like; a 99.5 4.6E-11 9.9E-16 127.0 34.8 209 421-655 4-217 (355)
91 cd05804 StaR_like StaR_like; a 99.5 1.3E-10 2.7E-15 123.7 35.0 316 381-726 2-336 (355)
92 KOG2376 Signal recognition par 99.5 2.3E-08 4.9E-13 103.4 46.6 477 80-756 24-514 (652)
93 KOG1840 Kinesin light chain [C 99.4 8.3E-11 1.8E-15 124.6 24.9 258 379-652 193-478 (508)
94 KOG3060 Uncharacterized conser 99.4 2.3E-10 5.1E-15 105.6 24.1 201 398-629 27-230 (289)
95 KOG3785 Uncharacterized conser 99.4 3.3E-08 7.3E-13 95.5 39.3 446 37-655 33-492 (557)
96 COG3071 HemY Uncharacterized e 99.4 7.3E-09 1.6E-13 102.4 35.5 286 434-758 95-386 (400)
97 PF12569 NARP1: NMDA receptor- 99.4 2E-09 4.3E-14 115.8 34.4 338 388-772 7-375 (517)
98 KOG2376 Signal recognition par 99.4 5.1E-08 1.1E-12 100.9 41.1 153 438-612 356-515 (652)
99 PRK15359 type III secretion sy 99.3 6.9E-11 1.5E-15 106.1 15.9 119 443-590 13-131 (144)
100 KOG0128 RNA-binding protein SA 99.3 3.9E-08 8.5E-13 105.6 38.5 419 15-575 101-560 (881)
101 TIGR03302 OM_YfiO outer membra 99.3 2.3E-10 4.9E-15 113.6 20.8 192 421-655 31-234 (235)
102 PRK14720 transcript cleavage f 99.3 4.8E-10 1E-14 125.7 25.3 174 421-621 29-202 (906)
103 PRK10370 formate-dependent nit 99.3 1.6E-10 3.5E-15 109.6 18.7 127 528-658 52-178 (198)
104 TIGR03302 OM_YfiO outer membra 99.3 5.1E-10 1.1E-14 111.1 21.5 186 462-692 34-234 (235)
105 KOG0550 Molecular chaperone (D 99.3 6.6E-10 1.4E-14 109.6 21.2 270 397-689 63-350 (486)
106 PRK15359 type III secretion sy 99.3 2.1E-10 4.5E-15 103.0 16.3 127 403-562 13-139 (144)
107 KOG3785 Uncharacterized conser 99.2 9E-07 2E-11 85.9 38.6 491 82-761 36-548 (557)
108 PF05843 Suf: Suppressor of fo 99.2 1E-10 2.2E-15 117.8 12.8 137 29-173 3-141 (280)
109 KOG0550 Molecular chaperone (D 99.2 1.2E-09 2.6E-14 107.8 19.2 277 433-726 59-350 (486)
110 COG3071 HemY Uncharacterized e 99.2 1.1E-07 2.4E-12 94.2 32.8 290 392-726 93-390 (400)
111 PF12569 NARP1: NMDA receptor- 99.2 1.6E-08 3.5E-13 108.9 29.6 263 462-759 5-288 (517)
112 PRK10370 formate-dependent nit 99.2 3.7E-10 8E-15 107.1 15.0 119 436-578 52-173 (198)
113 PF05843 Suf: Suppressor of fo 99.2 3.7E-10 8E-15 113.7 14.3 141 516-661 2-144 (280)
114 KOG1128 Uncharacterized conser 99.2 1.6E-09 3.5E-14 114.5 18.5 216 425-689 400-616 (777)
115 PRK14720 transcript cleavage f 99.2 1.2E-08 2.6E-13 114.7 26.6 227 452-731 26-256 (906)
116 KOG0128 RNA-binding protein SA 99.1 2.2E-07 4.8E-12 100.0 33.6 363 377-757 139-558 (881)
117 KOG3060 Uncharacterized conser 99.1 2.7E-08 5.7E-13 92.3 23.0 157 473-656 64-223 (289)
118 KOG1128 Uncharacterized conser 99.1 3.2E-09 6.8E-14 112.3 19.3 215 389-655 402-618 (777)
119 PRK15179 Vi polysaccharide bio 99.1 3.7E-09 8E-14 118.2 19.7 146 421-592 84-229 (694)
120 COG5010 TadD Flp pilus assembl 99.1 1.6E-08 3.4E-13 95.0 19.9 164 421-614 65-228 (257)
121 COG5010 TadD Flp pilus assembl 99.1 1.7E-08 3.7E-13 94.7 19.9 176 442-649 52-227 (257)
122 PRK15179 Vi polysaccharide bio 99.1 1.4E-08 2.9E-13 113.7 22.5 133 461-618 86-218 (694)
123 TIGR02552 LcrH_SycD type III s 99.1 2.3E-09 5.1E-14 96.0 13.5 109 446-578 6-114 (135)
124 TIGR02552 LcrH_SycD type III s 99.0 8.9E-09 1.9E-13 92.2 16.3 119 536-661 4-122 (135)
125 PF08424 NRDE-2: NRDE-2, neces 99.0 8.5E-09 1.8E-13 105.9 16.3 118 9-134 1-134 (321)
126 COG4783 Putative Zn-dependent 99.0 7E-08 1.5E-12 98.3 20.0 153 421-619 304-456 (484)
127 PRK04841 transcriptional regul 98.9 1.6E-05 3.4E-10 96.0 43.7 320 394-730 420-764 (903)
128 PRK15363 pathogenicity island 98.9 4.5E-08 9.7E-13 85.8 15.2 97 462-578 36-132 (157)
129 KOG3617 WD40 and TPR repeat-co 98.9 7.1E-06 1.5E-10 88.1 34.0 196 386-655 913-1117(1416)
130 KOG0553 TPR repeat-containing 98.9 1.5E-08 3.2E-13 96.9 12.8 116 427-566 85-200 (304)
131 KOG3617 WD40 and TPR repeat-co 98.9 1.7E-06 3.6E-11 92.7 28.8 298 381-764 798-1111(1416)
132 COG4235 Cytochrome c biogenesi 98.9 6.4E-08 1.4E-12 93.5 16.1 125 530-658 137-261 (287)
133 KOG0553 TPR repeat-containing 98.9 1.5E-08 3.3E-13 96.8 11.0 107 467-596 87-193 (304)
134 PRK15363 pathogenicity island 98.9 4.6E-08 9.9E-13 85.8 13.1 104 421-548 33-136 (157)
135 COG4235 Cytochrome c biogenesi 98.8 1E-07 2.2E-12 92.1 14.5 121 42-173 138-261 (287)
136 PF04733 Coatomer_E: Coatomer 98.8 8.7E-07 1.9E-11 89.2 21.9 257 392-693 10-268 (290)
137 COG4783 Putative Zn-dependent 98.8 1.2E-06 2.6E-11 89.6 21.3 130 514-650 305-434 (484)
138 PRK04841 transcriptional regul 98.8 1.7E-05 3.8E-10 95.6 35.2 324 424-766 410-764 (903)
139 PLN03088 SGT1, suppressor of 98.7 2.3E-07 5E-12 97.0 15.1 112 427-562 6-117 (356)
140 COG5191 Uncharacterized conser 98.7 3.4E-08 7.5E-13 93.8 6.0 131 9-149 33-187 (435)
141 COG3898 Uncharacterized membra 98.7 0.00032 6.8E-09 69.7 33.3 295 433-766 94-394 (531)
142 PF04733 Coatomer_E: Coatomer 98.7 1.3E-06 2.8E-11 88.0 17.6 247 473-757 13-260 (290)
143 KOG3616 Selective LIM binding 98.6 0.0013 2.7E-08 70.5 41.1 270 424-757 766-1058(1636)
144 PLN03088 SGT1, suppressor of 98.6 5.7E-07 1.2E-11 94.1 14.9 104 465-590 6-109 (356)
145 KOG4340 Uncharacterized conser 98.6 0.00077 1.7E-08 64.6 32.5 165 383-572 142-333 (459)
146 TIGR02795 tol_pal_ybgF tol-pal 98.6 1.1E-06 2.3E-11 76.6 13.0 109 424-550 3-111 (119)
147 PRK10153 DNA-binding transcrip 98.6 1.9E-06 4.1E-11 93.9 17.4 159 12-174 322-488 (517)
148 PF13414 TPR_11: TPR repeat; P 98.6 2.8E-07 6.1E-12 71.1 8.0 65 514-578 2-67 (69)
149 KOG1130 Predicted G-alpha GTPa 98.6 8.2E-06 1.8E-10 81.0 19.4 280 431-726 25-344 (639)
150 cd00189 TPR Tetratricopeptide 98.5 9.1E-07 2E-11 73.2 11.4 64 515-578 34-97 (100)
151 cd00189 TPR Tetratricopeptide 98.5 1.2E-06 2.7E-11 72.4 11.7 99 517-620 2-100 (100)
152 PF13414 TPR_11: TPR repeat; P 98.5 8.4E-07 1.8E-11 68.4 8.9 67 59-133 2-69 (69)
153 TIGR02795 tol_pal_ybgF tol-pal 98.5 2.4E-06 5.1E-11 74.4 12.9 100 462-578 3-105 (119)
154 PRK10153 DNA-binding transcrip 98.5 7E-06 1.5E-10 89.5 19.1 145 513-663 335-492 (517)
155 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 2.5E-06 5.5E-11 88.6 14.9 126 425-577 171-296 (395)
156 PF09976 TPR_21: Tetratricopep 98.5 5.6E-06 1.2E-10 74.7 15.4 123 435-576 23-145 (145)
157 PF14938 SNAP: Soluble NSF att 98.5 6.7E-06 1.5E-10 83.4 17.7 211 426-651 38-264 (282)
158 PF13432 TPR_16: Tetratricopep 98.5 5.9E-07 1.3E-11 68.3 7.4 64 520-585 2-65 (65)
159 PRK02603 photosystem I assembl 98.5 7.5E-06 1.6E-10 76.4 16.0 122 420-584 32-153 (172)
160 COG3898 Uncharacterized membra 98.5 0.0015 3.3E-08 65.1 31.9 286 397-726 98-392 (531)
161 PRK10866 outer membrane biogen 98.4 8.6E-05 1.9E-09 73.0 23.2 184 548-756 31-235 (243)
162 PF13432 TPR_16: Tetratricopep 98.4 1.4E-06 2.9E-11 66.3 8.2 64 466-549 2-65 (65)
163 CHL00033 ycf3 photosystem I as 98.4 1.2E-05 2.5E-10 74.8 15.4 104 439-561 15-118 (168)
164 PF14938 SNAP: Soluble NSF att 98.4 3.9E-05 8.4E-10 77.9 20.3 207 516-724 36-264 (282)
165 PF09976 TPR_21: Tetratricopep 98.4 1.5E-05 3.2E-10 72.0 15.4 120 601-724 24-145 (145)
166 COG4785 NlpI Lipoprotein NlpI, 98.4 5.7E-05 1.2E-09 68.7 18.6 196 515-726 65-266 (297)
167 PRK11906 transcriptional regul 98.4 2.6E-05 5.6E-10 80.5 18.6 152 530-689 273-436 (458)
168 PRK02603 photosystem I assembl 98.4 1.5E-05 3.1E-10 74.5 15.7 104 623-730 34-152 (172)
169 PF08424 NRDE-2: NRDE-2, neces 98.4 1.7E-05 3.6E-10 81.7 17.4 141 513-655 17-185 (321)
170 PF12895 Apc3: Anaphase-promot 98.4 1.3E-06 2.9E-11 70.3 7.2 58 516-574 26-83 (84)
171 PRK11906 transcriptional regul 98.4 2.8E-05 6.1E-10 80.3 18.2 173 19-194 240-431 (458)
172 PRK10866 outer membrane biogen 98.3 8.9E-05 1.9E-09 72.8 21.0 187 514-724 31-239 (243)
173 PF13525 YfiO: Outer membrane 98.3 0.00011 2.4E-09 70.5 21.2 188 514-752 4-197 (203)
174 PF13525 YfiO: Outer membrane 98.3 3.6E-05 7.8E-10 73.8 17.3 182 422-643 4-197 (203)
175 KOG4340 Uncharacterized conser 98.3 0.00011 2.3E-09 70.2 19.7 218 472-721 21-265 (459)
176 CHL00033 ycf3 photosystem I as 98.3 1.6E-05 3.4E-10 74.0 14.4 88 421-529 33-120 (168)
177 COG4785 NlpI Lipoprotein NlpI, 98.3 0.00011 2.3E-09 67.0 17.7 192 425-653 67-266 (297)
178 COG5191 Uncharacterized conser 98.3 1E-06 2.2E-11 84.0 5.2 98 9-113 89-187 (435)
179 PF12895 Apc3: Anaphase-promot 98.3 3.6E-06 7.8E-11 67.7 7.6 83 436-541 2-84 (84)
180 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 2.7E-05 5.8E-10 81.1 15.7 120 520-649 174-293 (395)
181 PRK15331 chaperone protein Sic 98.2 2.4E-05 5.2E-10 69.2 12.3 92 466-577 42-133 (165)
182 PF14559 TPR_19: Tetratricopep 98.2 5E-06 1.1E-10 63.8 6.9 64 81-146 4-67 (68)
183 PF14559 TPR_19: Tetratricopep 98.2 6.6E-06 1.4E-10 63.1 7.4 63 526-590 2-64 (68)
184 PRK10803 tol-pal system protei 98.2 5.4E-05 1.2E-09 74.8 15.2 110 423-550 142-252 (263)
185 PRK15331 chaperone protein Sic 98.2 3.9E-05 8.5E-10 67.8 12.6 105 421-550 35-139 (165)
186 KOG0543 FKBP-type peptidyl-pro 98.2 4E-05 8.8E-10 77.1 14.2 146 427-619 212-357 (397)
187 COG4700 Uncharacterized protei 98.2 0.00022 4.8E-09 63.4 17.0 129 516-650 90-219 (251)
188 COG4700 Uncharacterized protei 98.2 0.00019 4.2E-09 63.7 16.6 129 422-573 88-217 (251)
189 COG0457 NrfG FOG: TPR repeat [ 98.1 0.001 2.2E-08 65.7 24.8 203 423-656 59-268 (291)
190 KOG2053 Mitochondrial inherita 98.1 0.011 2.4E-07 65.5 32.5 220 436-689 22-255 (932)
191 KOG3616 Selective LIM binding 98.1 0.026 5.6E-07 60.9 39.3 46 79-125 455-500 (1636)
192 COG0457 NrfG FOG: TPR repeat [ 98.1 0.01 2.2E-07 58.4 30.1 205 516-730 60-268 (291)
193 PF12688 TPR_5: Tetratrico pep 98.1 0.00012 2.5E-09 62.5 13.2 62 516-577 39-103 (120)
194 PRK10803 tol-pal system protei 98.1 6.9E-05 1.5E-09 74.1 13.6 105 462-585 143-251 (263)
195 KOG0543 FKBP-type peptidyl-pro 98.1 0.00011 2.4E-09 74.0 14.9 149 463-657 210-359 (397)
196 KOG2471 TPR repeat-containing 98.0 0.0017 3.6E-08 66.6 22.8 308 431-757 214-679 (696)
197 KOG3081 Vesicle coat complex C 98.0 0.012 2.6E-07 56.0 26.8 166 424-620 109-274 (299)
198 PF12688 TPR_5: Tetratrico pep 98.0 0.00011 2.4E-09 62.6 12.3 97 516-617 2-104 (120)
199 PF13371 TPR_9: Tetratricopept 98.0 3.6E-05 7.8E-10 60.0 8.3 65 523-589 3-67 (73)
200 PF13371 TPR_9: Tetratricopept 98.0 3.1E-05 6.8E-10 60.3 7.9 69 468-556 2-70 (73)
201 KOG3081 Vesicle coat complex C 97.9 0.017 3.7E-07 55.1 24.6 259 388-693 13-274 (299)
202 KOG2053 Mitochondrial inherita 97.9 0.084 1.8E-06 58.9 52.2 127 82-217 23-151 (932)
203 COG4105 ComL DNA uptake lipopr 97.8 0.01 2.2E-07 56.7 23.0 67 701-771 171-239 (254)
204 KOG1130 Predicted G-alpha GTPa 97.8 0.00076 1.6E-08 67.5 15.1 272 469-757 25-339 (639)
205 COG4105 ComL DNA uptake lipopr 97.8 0.0097 2.1E-07 56.9 21.6 182 514-720 33-227 (254)
206 KOG1941 Acetylcholine receptor 97.8 0.0077 1.7E-07 59.6 21.3 307 397-725 20-359 (518)
207 PF13428 TPR_14: Tetratricopep 97.7 7.1E-05 1.5E-09 51.3 5.0 42 516-557 2-43 (44)
208 PF06552 TOM20_plant: Plant sp 97.7 0.00038 8.3E-09 62.2 10.4 94 42-135 7-113 (186)
209 PF13428 TPR_14: Tetratricopep 97.7 8.3E-05 1.8E-09 50.9 4.8 42 424-469 2-43 (44)
210 COG1729 Uncharacterized protei 97.7 0.00085 1.8E-08 64.6 13.3 111 426-554 144-254 (262)
211 KOG2796 Uncharacterized conser 97.7 0.029 6.3E-07 53.2 22.7 136 517-657 179-319 (366)
212 KOG4234 TPR repeat-containing 97.6 0.0012 2.6E-08 59.6 12.2 110 427-556 99-209 (271)
213 KOG1585 Protein required for f 97.6 0.011 2.5E-07 55.3 18.7 202 516-721 32-251 (308)
214 KOG2796 Uncharacterized conser 97.5 0.0093 2E-07 56.4 17.5 137 425-579 179-316 (366)
215 PF13424 TPR_12: Tetratricopep 97.5 0.00037 8E-09 55.0 7.3 66 513-578 3-75 (78)
216 PF13431 TPR_17: Tetratricopep 97.5 9.4E-05 2E-09 47.1 3.0 33 537-569 1-33 (34)
217 PF13512 TPR_18: Tetratricopep 97.5 0.0023 5E-08 55.5 12.4 57 602-658 24-81 (142)
218 PLN03098 LPA1 LOW PSII ACCUMUL 97.5 0.00046 9.9E-09 71.5 9.2 66 513-578 73-141 (453)
219 KOG4555 TPR repeat-containing 97.4 0.0024 5.3E-08 53.3 11.1 95 522-620 50-147 (175)
220 PF04184 ST7: ST7 protein; In 97.4 0.014 3E-07 60.8 18.9 182 529-731 182-379 (539)
221 KOG4234 TPR repeat-containing 97.4 0.0018 4E-08 58.4 11.0 105 468-589 102-206 (271)
222 PF10345 Cohesin_load: Cohesin 97.4 0.38 8.2E-06 54.8 35.9 311 381-721 26-428 (608)
223 PF13512 TPR_18: Tetratricopep 97.4 0.0041 8.9E-08 54.0 12.8 71 421-492 8-78 (142)
224 COG1729 Uncharacterized protei 97.4 0.0027 6E-08 61.2 12.4 97 630-730 147-247 (262)
225 PF06552 TOM20_plant: Plant sp 97.3 0.0038 8.2E-08 56.0 11.9 88 531-620 7-112 (186)
226 PF13424 TPR_12: Tetratricopep 97.3 0.00075 1.6E-08 53.2 7.0 69 422-490 4-75 (78)
227 KOG4648 Uncharacterized conser 97.3 0.0012 2.7E-08 64.4 9.2 107 427-557 101-207 (536)
228 KOG2471 TPR repeat-containing 97.3 0.075 1.6E-06 55.0 21.7 299 421-725 238-683 (696)
229 PLN03098 LPA1 LOW PSII ACCUMUL 97.3 0.0011 2.3E-08 68.8 9.0 70 420-490 72-141 (453)
230 KOG4555 TPR repeat-containing 97.3 0.0054 1.2E-07 51.3 11.1 94 631-726 50-144 (175)
231 KOG1941 Acetylcholine receptor 97.2 0.037 8.1E-07 54.9 18.5 175 550-726 84-275 (518)
232 KOG1585 Protein required for f 97.2 0.034 7.4E-07 52.2 17.3 197 397-612 45-251 (308)
233 KOG4648 Uncharacterized conser 97.2 0.0025 5.4E-08 62.4 10.2 108 519-633 101-208 (536)
234 PF13281 DUF4071: Domain of un 97.2 0.071 1.5E-06 54.9 21.1 28 702-729 310-337 (374)
235 PF13431 TPR_17: Tetratricopep 97.1 0.00047 1E-08 43.8 3.0 33 90-122 1-33 (34)
236 PF08311 Mad3_BUB1_I: Mad3/BUB 97.1 0.013 2.8E-07 50.7 12.3 97 624-724 22-126 (126)
237 PF02259 FAT: FAT domain; Int 97.0 0.48 1E-05 50.0 27.0 141 421-561 144-304 (352)
238 PF08311 Mad3_BUB1_I: Mad3/BUB 97.0 0.029 6.2E-07 48.6 13.9 109 642-757 3-123 (126)
239 KOG2610 Uncharacterized conser 96.9 0.47 1E-05 47.0 22.4 160 432-616 112-275 (491)
240 KOG4642 Chaperone-dependent E3 96.8 0.019 4.1E-07 53.7 11.5 102 39-148 23-127 (284)
241 KOG0985 Vesicle coat protein c 96.8 1.4 3.1E-05 50.2 43.0 325 397-756 998-1377(1666)
242 KOG0530 Protein farnesyltransf 96.8 0.42 9E-06 45.8 20.3 184 400-615 60-251 (318)
243 smart00386 HAT HAT (Half-A-TPR 96.8 0.0026 5.7E-08 40.1 4.2 32 40-71 1-32 (33)
244 PF07719 TPR_2: Tetratricopept 96.8 0.0032 6.9E-08 40.1 4.6 33 424-456 2-34 (34)
245 COG3118 Thioredoxin domain-con 96.8 0.33 7.1E-06 47.6 19.9 123 525-657 144-269 (304)
246 PF13281 DUF4071: Domain of un 96.7 0.3 6.5E-06 50.5 20.8 193 516-726 142-357 (374)
247 PF04184 ST7: ST7 protein; In 96.7 0.17 3.6E-06 53.1 18.8 183 473-693 180-378 (539)
248 KOG1586 Protein required for f 96.7 0.58 1.3E-05 44.0 24.6 142 462-620 75-227 (288)
249 PF00515 TPR_1: Tetratricopept 96.7 0.0029 6.3E-08 40.3 3.9 32 424-455 2-33 (34)
250 smart00386 HAT HAT (Half-A-TPR 96.6 0.0043 9.3E-08 39.1 4.4 32 82-113 1-32 (33)
251 KOG1586 Protein required for f 96.6 0.66 1.4E-05 43.7 21.3 129 601-730 86-227 (288)
252 KOG0530 Protein farnesyltransf 96.6 0.38 8.2E-06 46.0 18.3 171 436-636 56-233 (318)
253 KOG2610 Uncharacterized conser 96.6 0.6 1.3E-05 46.3 20.3 153 600-757 115-271 (491)
254 PF10300 DUF3808: Protein of u 96.5 0.15 3.3E-06 55.6 18.5 173 377-577 183-375 (468)
255 PF00515 TPR_1: Tetratricopept 96.5 0.0069 1.5E-07 38.5 4.8 29 550-578 2-30 (34)
256 KOG4642 Chaperone-dependent E3 96.4 0.034 7.3E-07 52.1 10.5 83 437-543 24-106 (284)
257 PF08631 SPO22: Meiosis protei 96.4 1.3 2.7E-05 44.9 27.2 139 434-578 4-150 (278)
258 PF07719 TPR_2: Tetratricopept 96.4 0.0081 1.8E-07 38.2 4.8 29 550-578 2-30 (34)
259 PF02259 FAT: FAT domain; Int 96.4 1.7 3.6E-05 45.9 25.5 154 582-746 143-305 (352)
260 PF02184 HAT: HAT (Half-A-TPR) 96.4 0.0061 1.3E-07 37.2 3.6 29 41-70 2-30 (32)
261 PF10300 DUF3808: Protein of u 96.4 0.41 8.9E-06 52.3 20.6 146 403-578 177-334 (468)
262 PF03704 BTAD: Bacterial trans 96.4 0.28 6E-06 44.1 16.4 63 516-578 63-125 (146)
263 KOG0890 Protein kinase of the 96.2 5.5 0.00012 50.3 44.9 281 421-730 1627-1960(2382)
264 KOG1464 COP9 signalosome, subu 96.2 0.47 1E-05 45.5 16.8 217 528-747 40-286 (440)
265 COG2976 Uncharacterized protei 96.2 0.07 1.5E-06 48.7 10.9 100 426-547 92-191 (207)
266 COG2909 MalT ATP-dependent tra 96.2 3.3 7.1E-05 47.1 32.0 319 421-771 345-695 (894)
267 COG3118 Thioredoxin domain-con 96.1 0.37 8E-06 47.3 16.3 143 600-752 146-291 (304)
268 KOG0376 Serine-threonine phosp 96.0 0.011 2.5E-07 61.2 5.9 106 429-558 10-115 (476)
269 smart00777 Mad3_BUB1_I Mad3/BU 95.8 0.11 2.4E-06 44.4 10.2 110 44-164 3-124 (125)
270 KOG0890 Protein kinase of the 95.8 8.5 0.00018 48.8 38.0 290 386-693 1630-1960(2382)
271 PF13181 TPR_8: Tetratricopept 95.8 0.018 3.8E-07 36.6 4.0 32 424-455 2-33 (34)
272 PF03704 BTAD: Bacterial trans 95.8 0.24 5.2E-06 44.5 13.0 63 462-544 63-125 (146)
273 PF04910 Tcf25: Transcriptiona 95.8 0.34 7.3E-06 50.7 15.6 163 450-656 33-225 (360)
274 KOG2041 WD40 repeat protein [G 95.7 4.3 9.2E-05 44.6 25.6 167 523-723 768-936 (1189)
275 smart00777 Mad3_BUB1_I Mad3/BU 95.6 0.25 5.5E-06 42.3 11.5 45 677-722 80-124 (125)
276 PF02184 HAT: HAT (Half-A-TPR) 95.6 0.024 5.2E-07 34.6 3.7 29 83-112 2-30 (32)
277 KOG1464 COP9 signalosome, subu 95.5 2.1 4.5E-05 41.2 18.1 220 473-711 39-286 (440)
278 COG2976 Uncharacterized protei 95.5 1.4 3.1E-05 40.4 16.3 117 444-579 73-189 (207)
279 KOG0985 Vesicle coat protein c 95.4 6.7 0.00014 45.2 44.4 177 58-276 950-1131(1666)
280 PF10345 Cohesin_load: Cohesin 95.4 6.5 0.00014 44.9 32.8 326 440-782 38-460 (608)
281 PF13181 TPR_8: Tetratricopept 95.4 0.036 7.9E-07 35.1 4.5 30 517-546 3-32 (34)
282 PF13176 TPR_7: Tetratricopept 95.4 0.02 4.2E-07 37.0 3.1 27 552-578 2-28 (36)
283 PF14561 TPR_20: Tetratricopep 95.3 0.25 5.5E-06 39.7 9.9 78 88-166 8-85 (90)
284 PF04910 Tcf25: Transcriptiona 95.1 1.6 3.4E-05 45.8 18.0 173 540-726 31-222 (360)
285 KOG0376 Serine-threonine phosp 95.1 0.031 6.7E-07 58.1 5.2 119 471-619 14-132 (476)
286 KOG0545 Aryl-hydrocarbon recep 95.1 0.49 1.1E-05 44.8 12.2 32 626-657 232-263 (329)
287 KOG2300 Uncharacterized conser 95.0 5.6 0.00012 41.9 39.7 339 397-757 61-469 (629)
288 PF13174 TPR_6: Tetratricopept 94.8 0.047 1E-06 34.2 3.7 32 425-456 2-33 (33)
289 KOG0551 Hsp90 co-chaperone CNS 94.8 0.25 5.4E-06 48.9 10.0 102 423-544 81-182 (390)
290 KOG0545 Aryl-hydrocarbon recep 94.4 1.2 2.5E-05 42.3 13.1 114 626-743 180-309 (329)
291 PF13174 TPR_6: Tetratricopept 94.4 0.082 1.8E-06 33.1 4.1 31 626-656 2-32 (33)
292 KOG4507 Uncharacterized conser 94.4 0.12 2.5E-06 54.8 7.3 98 435-555 619-716 (886)
293 KOG1308 Hsp70-interacting prot 94.3 0.054 1.2E-06 53.7 4.5 118 600-725 126-243 (377)
294 KOG4507 Uncharacterized conser 94.3 6.1 0.00013 42.6 19.4 97 629-730 611-708 (886)
295 PF13176 TPR_7: Tetratricopept 94.3 0.079 1.7E-06 34.1 3.8 27 425-451 1-27 (36)
296 KOG3824 Huntingtin interacting 94.3 0.17 3.6E-06 49.3 7.5 64 525-590 126-189 (472)
297 KOG1308 Hsp70-interacting prot 94.0 0.063 1.4E-06 53.3 4.2 53 436-492 127-179 (377)
298 KOG1538 Uncharacterized conser 93.7 8.5 0.00018 42.0 19.1 83 627-725 750-832 (1081)
299 KOG2422 Uncharacterized conser 93.2 5.1 0.00011 43.2 16.5 160 81-282 251-452 (665)
300 KOG3824 Huntingtin interacting 93.1 0.29 6.4E-06 47.7 6.9 67 472-558 127-193 (472)
301 COG2909 MalT ATP-dependent tra 93.0 21 0.00045 41.0 25.2 250 421-685 413-684 (894)
302 KOG1550 Extracellular protein 92.8 20 0.00044 40.3 26.6 144 399-578 228-393 (552)
303 PF10602 RPN7: 26S proteasome 92.7 2.6 5.6E-05 39.1 12.5 103 624-726 36-142 (177)
304 smart00028 TPR Tetratricopepti 92.3 0.23 5.1E-06 30.2 3.8 32 424-455 2-33 (34)
305 PF08631 SPO22: Meiosis protei 92.2 14 0.00031 37.3 26.0 161 526-689 4-186 (278)
306 KOG0551 Hsp90 co-chaperone CNS 92.0 2.2 4.8E-05 42.5 11.4 103 460-578 80-182 (390)
307 PF14561 TPR_20: Tetratricopep 91.9 3.2 6.9E-05 33.4 10.5 50 607-658 7-56 (90)
308 PF04781 DUF627: Protein of un 91.7 3.9 8.4E-05 34.0 10.8 46 533-578 62-107 (111)
309 PF04053 Coatomer_WDAD: Coatom 91.5 4.3 9.3E-05 43.8 14.1 27 515-541 347-373 (443)
310 COG4976 Predicted methyltransf 91.3 0.29 6.4E-06 45.7 4.5 58 471-548 5-62 (287)
311 PF10602 RPN7: 26S proteasome 91.1 3.4 7.4E-05 38.3 11.4 65 515-579 36-103 (177)
312 PRK10941 hypothetical protein; 90.6 1.8 3.8E-05 43.1 9.5 68 520-589 186-253 (269)
313 KOG1550 Extracellular protein 90.6 34 0.00074 38.5 24.9 274 439-756 228-532 (552)
314 KOG1463 26S proteasome regulat 90.4 21 0.00046 36.0 20.8 274 433-729 14-318 (411)
315 COG4976 Predicted methyltransf 90.1 0.42 9.1E-06 44.8 4.3 59 525-585 5-63 (287)
316 PF04053 Coatomer_WDAD: Coatom 90.1 11 0.00023 40.9 15.5 154 434-649 272-427 (443)
317 PF14853 Fis1_TPR_C: Fis1 C-te 90.0 1.9 4.2E-05 30.5 6.7 41 627-667 4-44 (53)
318 PF13041 PPR_2: PPR repeat fam 90.0 0.82 1.8E-05 32.0 5.0 39 733-771 3-41 (50)
319 KOG1538 Uncharacterized conser 89.7 4 8.8E-05 44.3 11.6 45 600-649 785-829 (1081)
320 smart00028 TPR Tetratricopepti 89.5 0.63 1.4E-05 28.2 3.8 31 626-656 3-33 (34)
321 PRK10941 hypothetical protein; 89.5 3.6 7.9E-05 40.9 10.7 68 467-554 187-254 (269)
322 PF09986 DUF2225: Uncharacteri 89.2 2.6 5.7E-05 40.4 9.2 95 398-492 92-196 (214)
323 PF09986 DUF2225: Uncharacteri 89.1 8.8 0.00019 36.8 12.7 95 603-726 92-194 (214)
324 PF09613 HrpB1_HrpK: Bacterial 88.9 17 0.00037 32.7 14.4 64 425-492 12-75 (160)
325 KOG3364 Membrane protein invol 88.9 2.6 5.6E-05 36.2 7.7 65 602-667 49-114 (149)
326 PF04781 DUF627: Protein of un 88.3 8.8 0.00019 31.9 10.3 49 678-729 62-110 (111)
327 PF14853 Fis1_TPR_C: Fis1 C-te 88.2 3.2 6.9E-05 29.4 6.7 35 520-554 6-40 (53)
328 PF13041 PPR_2: PPR repeat fam 87.3 3.4 7.5E-05 28.7 6.7 45 548-593 2-46 (50)
329 TIGR02561 HrpB1_HrpK type III 87.1 21 0.00045 31.6 14.0 56 433-492 20-75 (153)
330 KOG3364 Membrane protein invol 87.0 13 0.00028 32.2 10.7 71 623-696 31-106 (149)
331 KOG4014 Uncharacterized conser 86.8 16 0.00034 33.3 11.7 101 547-654 32-142 (248)
332 PF11207 DUF2989: Protein of u 86.8 15 0.00032 34.4 12.0 79 672-753 118-198 (203)
333 PF12854 PPR_1: PPR repeat 86.6 1.5 3.4E-05 27.6 4.1 27 733-759 7-33 (34)
334 COG4649 Uncharacterized protei 86.5 25 0.00054 31.9 17.8 148 386-558 60-209 (221)
335 PF11207 DUF2989: Protein of u 86.2 16 0.00035 34.2 12.0 73 476-568 121-197 (203)
336 KOG3807 Predicted membrane pro 86.1 40 0.00086 33.9 19.1 187 529-739 198-402 (556)
337 PRK15180 Vi polysaccharide bio 86.1 2.5 5.5E-05 44.1 7.3 118 434-578 300-420 (831)
338 KOG2300 Uncharacterized conser 85.3 56 0.0012 34.9 44.1 199 554-756 328-550 (629)
339 KOG2041 WD40 repeat protein [G 84.9 71 0.0015 35.7 31.3 28 249-276 796-823 (1189)
340 KOG2066 Vacuolar assembly/sort 84.8 78 0.0017 36.0 22.1 65 705-781 627-695 (846)
341 PF13374 TPR_10: Tetratricopep 84.7 2.2 4.7E-05 28.1 4.4 29 550-578 3-31 (42)
342 COG4649 Uncharacterized protei 83.9 34 0.00073 31.1 16.0 122 601-726 71-196 (221)
343 PF12854 PPR_1: PPR repeat 83.3 2.6 5.7E-05 26.6 4.0 27 249-275 7-33 (34)
344 COG3629 DnrI DNA-binding trans 82.1 6.3 0.00014 39.2 8.1 64 422-489 152-215 (280)
345 PF12862 Apc5: Anaphase-promot 81.9 9.2 0.0002 31.1 7.8 57 671-727 9-71 (94)
346 PF09613 HrpB1_HrpK: Bacterial 81.4 41 0.00088 30.3 14.0 66 518-585 13-78 (160)
347 PF13374 TPR_10: Tetratricopep 81.3 3.1 6.8E-05 27.3 4.1 28 425-452 4-31 (42)
348 KOG0529 Protein geranylgeranyl 81.2 56 0.0012 34.2 14.4 137 476-636 90-241 (421)
349 PF12862 Apc5: Anaphase-promot 81.0 13 0.00027 30.3 8.3 57 600-656 10-73 (94)
350 KOG4814 Uncharacterized conser 80.9 7.8 0.00017 42.3 8.6 101 386-490 356-457 (872)
351 COG3629 DnrI DNA-binding trans 80.9 7.7 0.00017 38.6 8.1 62 516-577 154-215 (280)
352 PF12968 DUF3856: Domain of Un 80.7 33 0.00072 28.9 12.8 105 462-578 8-129 (144)
353 PRK15180 Vi polysaccharide bio 80.5 10 0.00023 39.8 9.1 124 527-657 301-424 (831)
354 COG1747 Uncharacterized N-term 79.0 1E+02 0.0022 33.4 22.7 172 465-668 70-247 (711)
355 PF07721 TPR_4: Tetratricopept 78.9 2.8 6.2E-05 24.4 2.8 24 251-274 3-26 (26)
356 COG1747 Uncharacterized N-term 78.8 1E+02 0.0022 33.3 21.9 188 378-597 59-251 (711)
357 PF07720 TPR_3: Tetratricopept 77.6 6.9 0.00015 25.1 4.5 31 424-454 2-34 (36)
358 KOG2066 Vacuolar assembly/sort 77.6 1.4E+02 0.003 34.2 25.0 68 82-154 370-439 (846)
359 TIGR03504 FimV_Cterm FimV C-te 76.2 4.3 9.3E-05 27.4 3.4 26 701-726 3-28 (44)
360 COG3947 Response regulator con 75.5 9.8 0.00021 37.4 6.8 55 142-197 283-340 (361)
361 PF07721 TPR_4: Tetratricopept 75.4 3.8 8.2E-05 23.9 2.7 23 551-573 3-25 (26)
362 KOG2758 Translation initiation 74.8 99 0.0021 31.2 14.9 158 516-689 36-196 (432)
363 KOG0529 Protein geranylgeranyl 74.6 1.2E+02 0.0025 31.9 16.1 134 530-668 90-239 (421)
364 COG0790 FOG: TPR repeat, SEL1 74.3 1E+02 0.0022 31.2 19.5 131 397-563 91-236 (292)
365 TIGR02561 HrpB1_HrpK type III 73.5 66 0.0014 28.6 13.2 56 523-578 18-73 (153)
366 COG3914 Spy Predicted O-linked 73.3 61 0.0013 35.6 12.6 126 529-660 45-178 (620)
367 COG3914 Spy Predicted O-linked 71.3 1E+02 0.0022 34.0 13.6 133 402-558 50-185 (620)
368 KOG4014 Uncharacterized conser 70.9 86 0.0019 28.8 14.9 96 384-492 33-143 (248)
369 TIGR00756 PPR pentatricopeptid 69.7 7.9 0.00017 23.9 3.5 26 736-761 3-28 (35)
370 PF01535 PPR: PPR repeat; Int 69.4 7.3 0.00016 23.4 3.2 27 251-277 2-28 (31)
371 PF01535 PPR: PPR repeat; Int 67.7 7.9 0.00017 23.2 3.1 24 736-759 3-26 (31)
372 PF04190 DUF410: Protein of un 66.8 1.4E+02 0.0031 29.7 15.6 34 545-578 136-170 (260)
373 KOG3783 Uncharacterized conser 66.8 2E+02 0.0044 31.4 18.9 70 421-492 265-334 (546)
374 PF07720 TPR_3: Tetratricopept 66.8 21 0.00046 22.9 4.8 30 626-655 3-34 (36)
375 PF10516 SHNi-TPR: SHNi-TPR; 66.3 13 0.00028 24.2 3.8 29 550-578 2-30 (38)
376 KOG2422 Uncharacterized conser 66.2 2.1E+02 0.0046 31.5 17.8 158 529-693 252-451 (665)
377 KOG4814 Uncharacterized conser 65.8 85 0.0018 34.8 11.7 103 462-579 356-458 (872)
378 COG2912 Uncharacterized conser 64.9 27 0.00059 34.4 7.5 62 524-587 190-251 (269)
379 KOG1920 IkappaB kinase complex 64.9 3.2E+02 0.007 33.1 20.3 78 603-686 888-965 (1265)
380 TIGR03504 FimV_Cterm FimV C-te 63.8 14 0.00031 24.9 3.8 25 427-451 3-27 (44)
381 PF10579 Rapsyn_N: Rapsyn N-te 63.4 69 0.0015 24.9 7.7 51 527-577 18-71 (80)
382 TIGR00756 PPR pentatricopeptid 63.2 18 0.00038 22.2 4.2 26 552-577 3-28 (35)
383 COG0790 FOG: TPR repeat, SEL1 63.1 1.8E+02 0.0038 29.5 21.4 96 530-638 128-236 (292)
384 PF13812 PPR_3: Pentatricopept 63.1 15 0.00033 22.5 3.8 27 735-761 3-29 (34)
385 PF09670 Cas_Cas02710: CRISPR- 62.1 2E+02 0.0043 30.6 14.0 60 555-617 137-198 (379)
386 PRK13184 pknD serine/threonine 61.7 3.5E+02 0.0077 32.5 28.2 103 427-550 479-587 (932)
387 KOG1310 WD40 repeat protein [G 61.7 43 0.00092 36.1 8.5 90 81-173 387-479 (758)
388 COG3947 Response regulator con 61.6 39 0.00085 33.5 7.7 59 519-577 283-341 (361)
389 KOG1839 Uncharacterized protei 61.6 1.1E+02 0.0023 37.3 12.6 166 396-578 945-1128(1236)
390 KOG0276 Vesicle coat complex C 60.4 2.5E+02 0.0053 31.3 13.9 50 524-578 646-695 (794)
391 KOG2581 26S proteasome regulat 60.3 2.3E+02 0.0049 29.8 14.5 139 549-693 124-279 (493)
392 PF10516 SHNi-TPR: SHNi-TPR; 60.0 17 0.00038 23.6 3.6 28 425-452 3-30 (38)
393 KOG0686 COP9 signalosome, subu 59.7 1.7E+02 0.0038 30.6 12.2 158 465-650 154-330 (466)
394 KOG0276 Vesicle coat complex C 59.3 1.3E+02 0.0028 33.2 11.7 95 424-566 615-709 (794)
395 KOG3807 Predicted membrane pro 58.1 2.2E+02 0.0047 28.9 16.0 99 375-492 208-306 (556)
396 PF12968 DUF3856: Domain of Un 58.1 1.2E+02 0.0025 25.8 11.1 100 425-544 9-129 (144)
397 PF09205 DUF1955: Domain of un 57.1 1.3E+02 0.0028 26.2 9.0 52 672-726 98-149 (161)
398 TIGR02996 rpt_mate_G_obs repea 56.2 26 0.00056 23.3 3.8 31 90-120 4-34 (42)
399 KOG1310 WD40 repeat protein [G 56.1 53 0.0011 35.4 8.1 86 530-620 389-477 (758)
400 PRK13184 pknD serine/threonine 55.5 4.4E+02 0.0096 31.7 29.1 301 399-725 535-868 (932)
401 PF09670 Cas_Cas02710: CRISPR- 55.5 2.3E+02 0.0051 30.1 13.2 121 599-726 142-270 (379)
402 smart00299 CLH Clathrin heavy 54.3 1.5E+02 0.0033 25.9 15.0 49 432-485 16-64 (140)
403 PRK12798 chemotaxis protein; R 53.3 3.1E+02 0.0066 29.2 24.8 223 527-757 93-319 (421)
404 COG2912 Uncharacterized conser 52.8 97 0.0021 30.7 8.9 64 471-554 191-254 (269)
405 PF12921 ATP13: Mitochondrial 52.8 1.5E+02 0.0033 25.6 12.0 92 522-614 9-116 (126)
406 PF11846 DUF3366: Domain of un 50.8 55 0.0012 30.8 7.1 49 604-655 127-175 (193)
407 PF11817 Foie-gras_1: Foie gra 48.0 1.1E+02 0.0024 30.2 8.9 65 423-487 178-244 (247)
408 PF13812 PPR_3: Pentatricopept 47.8 52 0.0011 20.0 4.4 25 552-576 4-28 (34)
409 PF07163 Pex26: Pex26 protein; 46.3 3.2E+02 0.0068 27.3 11.5 109 82-193 49-181 (309)
410 PF09797 NatB_MDM20: N-acetylt 46.2 87 0.0019 33.1 8.4 49 80-128 195-243 (365)
411 PF10579 Rapsyn_N: Rapsyn N-te 46.1 79 0.0017 24.6 5.6 32 82-113 20-51 (80)
412 KOG2114 Vacuolar assembly/sort 45.5 5.6E+02 0.012 29.9 19.7 59 550-618 369-427 (933)
413 KOG0686 COP9 signalosome, subu 44.7 1.4E+02 0.0031 31.2 9.0 62 516-577 151-215 (466)
414 PF15297 CKAP2_C: Cytoskeleton 44.7 80 0.0017 32.4 7.2 56 400-458 120-175 (353)
415 PF00244 14-3-3: 14-3-3 protei 44.6 3.1E+02 0.0068 26.8 12.5 30 426-455 4-33 (236)
416 TIGR02996 rpt_mate_G_obs repea 44.0 65 0.0014 21.5 4.2 32 610-643 4-35 (42)
417 PF10373 EST1_DNA_bind: Est1 D 43.6 62 0.0014 32.5 6.7 62 480-561 1-62 (278)
418 cd02680 MIT_calpain7_2 MIT: do 43.2 43 0.00093 25.8 3.9 17 710-726 19-35 (75)
419 PF12739 TRAPPC-Trs85: ER-Golg 43.1 4.6E+02 0.0099 28.3 15.2 41 425-470 210-250 (414)
420 COG5536 BET4 Protein prenyltra 42.5 88 0.0019 30.9 6.7 104 5-110 86-192 (328)
421 PF10373 EST1_DNA_bind: Est1 D 42.5 1E+02 0.0023 30.8 8.2 46 442-491 1-46 (278)
422 PF09797 NatB_MDM20: N-acetylt 42.3 4.4E+02 0.0095 27.8 13.7 40 534-573 202-241 (365)
423 KOG2908 26S proteasome regulat 40.8 4.2E+02 0.0092 27.2 17.0 95 397-491 89-187 (380)
424 cd02680 MIT_calpain7_2 MIT: do 39.8 41 0.00089 25.9 3.4 17 637-653 19-35 (75)
425 KOG4279 Serine/threonine prote 38.9 3.2E+02 0.007 31.2 11.0 16 640-655 303-318 (1226)
426 smart00299 CLH Clathrin heavy 38.0 2.7E+02 0.0059 24.2 13.7 100 82-195 21-121 (140)
427 PF15297 CKAP2_C: Cytoskeleton 37.2 1.8E+02 0.0039 30.0 8.3 66 677-744 120-186 (353)
428 PF14929 TAF1_subA: TAF RNA Po 36.7 6.5E+02 0.014 28.2 13.9 86 522-615 349-439 (547)
429 PF00637 Clathrin: Region in C 35.9 3.4 7.3E-05 36.8 -3.7 23 462-484 43-65 (143)
430 COG5159 RPN6 26S proteasome re 34.9 4.8E+02 0.01 26.1 22.5 203 520-726 8-235 (421)
431 KOG1839 Uncharacterized protei 34.2 4.3E+02 0.0092 32.5 11.8 124 527-653 944-1086(1236)
432 cd00280 TRFH Telomeric Repeat 33.9 3.3E+02 0.0072 25.3 8.6 27 523-550 119-145 (200)
433 PF15015 NYD-SP12_N: Spermatog 33.5 4.3E+02 0.0094 28.0 10.3 30 463-492 230-259 (569)
434 KOG2581 26S proteasome regulat 33.4 6.1E+02 0.013 26.9 17.6 112 423-550 169-282 (493)
435 PF00244 14-3-3: 14-3-3 protei 33.2 4.7E+02 0.01 25.6 15.7 29 464-492 4-32 (236)
436 PRK15490 Vi polysaccharide bio 32.5 2.7E+02 0.0059 31.2 9.4 80 472-573 19-98 (578)
437 PF11846 DUF3366: Domain of un 31.9 1.2E+02 0.0027 28.4 6.2 33 514-546 143-175 (193)
438 PF04212 MIT: MIT (microtubule 31.8 1E+02 0.0022 23.1 4.5 16 710-725 18-33 (69)
439 COG4941 Predicted RNA polymera 31.7 5.9E+02 0.013 26.2 18.8 175 532-726 213-394 (415)
440 PF08771 Rapamycin_bind: Rapam 31.6 1.1E+02 0.0024 25.1 5.0 88 61-152 11-98 (100)
441 TIGR01987 HI0074 nucleotidyltr 31.1 2.8E+02 0.006 23.9 7.5 23 569-592 63-85 (123)
442 KOG1166 Mitotic checkpoint ser 30.9 8.6E+02 0.019 29.5 13.6 74 673-749 91-165 (974)
443 cd02682 MIT_AAA_Arch MIT: doma 30.7 1.3E+02 0.0029 23.2 4.8 16 643-658 32-47 (75)
444 KOG0292 Vesicle coat complex C 30.3 6.6E+02 0.014 29.6 11.8 129 472-653 654-782 (1202)
445 PF04212 MIT: MIT (microtubule 30.0 1.3E+02 0.0029 22.5 4.9 19 560-578 16-34 (69)
446 PF09205 DUF1955: Domain of un 30.0 3.8E+02 0.0083 23.5 15.3 138 430-578 9-149 (161)
447 smart00101 14_3_3 14-3-3 homol 29.8 5.5E+02 0.012 25.3 16.9 50 604-653 144-200 (244)
448 KOG1811 Predicted Zn2+-binding 29.7 1.7E+02 0.0037 32.2 7.0 65 659-725 586-652 (1141)
449 PF04090 RNA_pol_I_TF: RNA pol 29.0 5E+02 0.011 24.6 12.6 66 424-492 42-107 (199)
450 KOG1497 COP9 signalosome, subu 28.9 6.4E+02 0.014 25.8 11.9 106 458-576 100-211 (399)
451 PF12921 ATP13: Mitochondrial 28.6 3.9E+02 0.0084 23.1 11.1 27 628-654 6-32 (126)
452 cd02683 MIT_1 MIT: domain cont 28.4 1.1E+02 0.0025 23.6 4.3 13 677-689 4-16 (77)
453 PF10255 Paf67: RNA polymerase 26.8 8.1E+02 0.018 26.2 11.6 30 515-544 164-193 (404)
454 KOG1811 Predicted Zn2+-binding 26.5 9.3E+02 0.02 26.9 13.0 69 547-619 585-655 (1141)
455 KOG4279 Serine/threonine prote 25.8 3E+02 0.0065 31.4 8.2 176 423-620 201-398 (1226)
456 PF04097 Nic96: Nup93/Nic96; 25.7 1.1E+03 0.023 27.2 21.5 22 465-486 262-283 (613)
457 PF14929 TAF1_subA: TAF RNA Po 25.5 9.9E+02 0.022 26.8 23.8 145 531-687 274-439 (547)
458 PHA02537 M terminase endonucle 25.3 6.2E+02 0.013 24.6 9.5 97 432-547 92-210 (230)
459 PF11817 Foie-gras_1: Foie gra 25.1 5.9E+02 0.013 25.0 9.9 56 516-571 179-240 (247)
460 COG5536 BET4 Protein prenyltra 24.7 7.2E+02 0.016 24.9 10.5 132 478-633 91-236 (328)
461 cd00280 TRFH Telomeric Repeat 24.5 3.4E+02 0.0075 25.2 7.0 28 107-135 116-143 (200)
462 COG4455 ImpE Protein of avirul 24.5 6.5E+02 0.014 24.3 11.9 59 471-549 11-69 (273)
463 KOG1920 IkappaB kinase complex 24.4 1.4E+03 0.03 28.2 21.8 20 631-650 959-978 (1265)
464 PF08771 Rapamycin_bind: Rapam 24.0 4.1E+02 0.0089 21.9 8.0 34 675-709 63-96 (100)
465 cd02684 MIT_2 MIT: domain cont 23.9 1.5E+02 0.0033 22.8 4.2 13 677-689 4-16 (75)
466 PRK15338 type III secretion sy 23.0 8.9E+02 0.019 25.4 11.3 165 446-646 82-256 (372)
467 cd02681 MIT_calpain7_1 MIT: do 22.9 1.7E+02 0.0036 22.7 4.2 15 711-725 20-34 (76)
468 KOG2114 Vacuolar assembly/sort 22.9 1.3E+03 0.028 27.2 18.8 56 434-493 345-401 (933)
469 PF10255 Paf67: RNA polymerase 22.9 7.2E+02 0.016 26.6 10.2 64 425-489 124-192 (404)
470 cd02679 MIT_spastin MIT: domai 22.6 1.5E+02 0.0032 23.2 3.9 16 528-543 21-36 (79)
471 KOG0889 Histone acetyltransfer 22.4 2.4E+03 0.051 30.1 33.1 504 51-668 2419-2969(3550)
472 cd02683 MIT_1 MIT: domain cont 22.3 3.8E+02 0.0081 20.8 7.9 17 561-577 18-34 (77)
473 PF12753 Nro1: Nuclear pore co 22.2 1.3E+02 0.0029 31.5 4.6 32 531-564 334-365 (404)
474 PF12739 TRAPPC-Trs85: ER-Golg 22.1 1E+03 0.022 25.7 14.8 181 516-727 209-400 (414)
475 KOG2063 Vacuolar assembly/sort 22.0 1.4E+03 0.031 27.3 21.1 28 251-278 506-533 (877)
476 KOG1166 Mitotic checkpoint ser 21.8 1.5E+03 0.032 27.6 13.8 104 585-689 34-143 (974)
477 PF02064 MAS20: MAS20 protein 20.2 2.4E+02 0.0053 24.1 5.1 37 253-289 67-103 (121)
478 PF12583 TPPII_N: Tripeptidyl 20.2 3.1E+02 0.0068 23.8 5.5 33 39-71 89-121 (139)
No 1
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=100.00 E-value=1.1e-83 Score=648.46 Aligned_cols=735 Identities=62% Similarity=1.053 Sum_probs=692.5
Q ss_pred CcccCCCCCCCcchHhHHHHhhCCCChHhHHHHHHHHHcCChhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccCCCCC
Q 003918 1 MAISKELYPSEDDLLYEEELLRNPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPIT 80 (786)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~l~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~al~~~P~~~~~w~~~~~~~~~~~~~~~~~ 80 (786)
+.++..++++.-|+-||..|.+||.+.+.|..|+.+..+.+..+...+|||||+.+|.|..+|..|++.....+.++|.+
T Consensus 1 ~~~n~dl~~~~EDvpfEeEilRnp~svk~W~RYIe~k~~sp~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T 80 (835)
T KOG2047|consen 1 VIENVDLNFENEDVPFEEEILRNPFSVKCWLRYIEHKAGSPDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPT 80 (835)
T ss_pred CCCCccccccccccchHHHHHcCchhHHHHHHHHHHHccCChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCC
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHhcCCChHHHHH
Q 003918 81 HPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLR 160 (786)
Q Consensus 81 ~~~~~~A~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~w~~~~~~~~~~~~~~~~A~~ 160 (786)
...|......|++++-...+.|.+|+.|+.+.+.++++...++.|.+||...|..+|..+|..|+.+..+.+-+ +.++.
T Consensus 81 ~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lP-ets~r 159 (835)
T KOG2047|consen 81 DPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLP-ETSIR 159 (835)
T ss_pred ChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCCh-HHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHccCCCCHHHHHHHHHhcCCHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHhcccccccCCcHHHHHHhh
Q 003918 161 VYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGG 240 (786)
Q Consensus 161 ~~~~~l~~~p~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (786)
+|+|.|+..|...+.|+.++...+++++|.+.|..+++++.|.++.++.+.++|..++++..++++.+.+..++++++.+
T Consensus 160 vyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~g 239 (835)
T KOG2047|consen 160 VYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGG 239 (835)
T ss_pred HHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCchhHHHHHHHHHHHHhhccHHHHHHHHHHHhhccCchhcHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccc
Q 003918 241 IRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEH 320 (786)
Q Consensus 241 ~~~~p~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (786)
+.++|+..+.+|.+||++|.+.|.+++|+.+|++++....+..+|..+|..|.+|++..+...|+ ........
T Consensus 240 i~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n------ 312 (835)
T KOG2047|consen 240 IRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGN------ 312 (835)
T ss_pred cccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccC------
Confidence 99999999999999999999999999999999999999999999999999999999988877776 21100000
Q ss_pred CCcchhhhHhhhhhhHHHHHHhHhcccccCccchHHHHHHHHHhhhhhchhhhhhhhhhcCCCCHHHHHHHHHhhcCCch
Q 003918 321 GSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPT 400 (786)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~ 400 (786)
-.+..++..+++.++.++++++.+++++++++||++++.|+.+..+++|+..
T Consensus 313 ----------------------------~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~ 364 (835)
T KOG2047|consen 313 ----------------------------EEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAA 364 (835)
T ss_pred ----------------------------hhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChH
Confidence 0245678899999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHH
Q 003918 401 KQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGA 480 (786)
Q Consensus 401 ~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A 480 (786)
+.+..|.+|+++++|...++....+|..+|++|...|+.+.|+.+|+++++.+-..+++++.+|..+|++++++.+++.|
T Consensus 365 ~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~A 444 (835)
T KOG2047|consen 365 EQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAA 444 (835)
T ss_pred HHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHH
Confidence 99999999999999998888889999999999999999999999999999999888999999999999999999999999
Q ss_pred HHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHH
Q 003918 481 LELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLE 560 (786)
Q Consensus 481 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 560 (786)
+++++++..+|.... ...++...+++.+++++..+|..|++++...|-++..+.+|++++.+.--.|++..++|.++.
T Consensus 445 l~lm~~A~~vP~~~~--~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLE 522 (835)
T KOG2047|consen 445 LKLMRRATHVPTNPE--LEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLE 522 (835)
T ss_pred HHHHHhhhcCCCchh--hhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 999999999887322 233667779999999999999999999999999999999999999999999999999999999
Q ss_pred HcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCH
Q 003918 561 EHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLA 640 (786)
Q Consensus 561 ~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~ 640 (786)
.+..++++.++|+|.+.+|+-|.-.++|+.|+..+..+++..+++.||.+|++|++..|+.....+++.|+.++...|..
T Consensus 523 eh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLa 602 (835)
T KOG2047|consen 523 EHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLA 602 (835)
T ss_pred hhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999999999999999999999999888899999999999999999877788999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHH
Q 003918 641 KRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIY 720 (786)
Q Consensus 641 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 720 (786)
.+|.++|+++....+......+|..++......-+....|++|++||+. .|+.....+.+.+++++.+.|.+++|+.+|
T Consensus 603 r~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~-Lp~~~~r~mclrFAdlEtklGEidRARaIy 681 (835)
T KOG2047|consen 603 RHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES-LPDSKAREMCLRFADLETKLGEIDRARAIY 681 (835)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh-CChHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 9999999999998888788899999999888888999999999999999 999888999999999999999999999999
Q ss_pred HHHHccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh-hhhHHHHH
Q 003918 721 VFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASY-SQVIYFSF 774 (786)
Q Consensus 721 ~~al~~~~p~~~~~~~~~~~~~~~~~G~~~~a~~~~~~~~~~~~~~-~~~~~~~~ 774 (786)
..+.+.++|..++++|..|-.|+.++||.+..++++++.|.+...| .++.+++.
T Consensus 682 a~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keMLRikRsvqa~yn~~~~~~a~ 736 (835)
T KOG2047|consen 682 AHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEMLRIKRSVQATYNTDVNSMAH 736 (835)
T ss_pred HhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 9999999999999999999999999999999999999999999999 45555443
No 2
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=3.3e-45 Score=357.77 Aligned_cols=502 Identities=22% Similarity=0.376 Sum_probs=425.9
Q ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcHHHHHH
Q 003918 44 KRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARR 123 (786)
Q Consensus 44 ~~~~~~~~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~~~A~~ 123 (786)
+.+..|+-.++.+--+...|+.|++++.++ +++..|+.+|+|||..+..|+++|+.|+.+++++++++.|+.
T Consensus 57 RkRkefEd~irrnR~~~~~WikYaqwEesq--------~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARN 128 (677)
T KOG1915|consen 57 RKRKEFEDQIRRNRLNMQVWIKYAQWEESQ--------KEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARN 128 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHH
Confidence 457889999999999999999999999987 999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCcchhhHHHHHHHHHhcCCChHHHHHHHHHHHccCCCCH--HHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 003918 124 TFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHI--EDFIEFLVKSKLWQEAAERLASVLNDDQ 201 (786)
Q Consensus 124 ~~~~al~~~p~~~~~~~w~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~--~~~~~~~~~~g~~~~A~~~~~~~l~~~~ 201 (786)
+++||+...|.- ..+|..|+.+....|+. ..|+++|++-+...|+.. ..|+.+.++....+.|.++|++.+-
T Consensus 129 v~dRAvt~lPRV--dqlWyKY~ymEE~LgNi-~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--- 202 (677)
T KOG1915|consen 129 VWDRAVTILPRV--DQLWYKYIYMEEMLGNI-AGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--- 202 (677)
T ss_pred HHHHHHHhcchH--HHHHHHHHHHHHHhccc-HHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe---
Confidence 999999999964 89999999999999999 999999999999999864 7899999999999999999999873
Q ss_pred ccccCCCcchHHHHHHHHHHhcccccccCCcHHHHHHhhhhccCchh--HHHHHHHHHHHHhhccHHHHHHHHHHHhhcc
Q 003918 202 FYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEV--GRLWTSLADYYIRRELFEKARDIFEEGMMTV 279 (786)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 279 (786)
.+...+.|..++.++..++.... +..+++.+++.+.++. ..+.+..|.+..++++++.|+.+|+-+|+..
T Consensus 203 -----~HP~v~~wikyarFE~k~g~~~~---aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~ 274 (677)
T KOG1915|consen 203 -----VHPKVSNWIKYARFEEKHGNVAL---ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI 274 (677)
T ss_pred -----ecccHHHHHHHHHHHHhcCcHHH---HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 23577899999999999886543 4456676666555432 4568899999999999999999999999999
Q ss_pred CchhcHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhHhcccccCccchHHHHH
Q 003918 280 VTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRL 359 (786)
Q Consensus 280 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (786)
|+... ..++..|+.++...+. ...+.+ .....+.
T Consensus 275 pk~ra-eeL~k~~~~fEKqfGd--------------------------------------------~~gIEd-~Iv~KRk 308 (677)
T KOG1915|consen 275 PKGRA-EELYKKYTAFEKQFGD--------------------------------------------KEGIED-AIVGKRK 308 (677)
T ss_pred CcccH-HHHHHHHHHHHHHhcc--------------------------------------------hhhhHH-HHhhhhh
Confidence 97642 4588888888765321 111111 1222333
Q ss_pred HHHHhhhhhchhhhhhhhhhcCCCCHHHHHHHHHhhc--CCchhHHHHHHHHHhccCCCc---cCCCcHHHHHHHHHHHH
Q 003918 360 ARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMK---AVGKPHTLWVAFAKLYE 434 (786)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~~~~al~~~~~~~---~~~~~~~~~~~~a~~~~ 434 (786)
-+|+. .++.||.|+++|+.+..+.+ |+.+...+.|++||..++|.+ .+.+.+.+|+.|+.+..
T Consensus 309 ~qYE~------------~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeE 376 (677)
T KOG1915|consen 309 FQYEK------------EVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEE 376 (677)
T ss_pred hHHHH------------HHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 44444 38899999999999999986 899999999999998777732 13456889999997654
Q ss_pred -HcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhh
Q 003918 435 -TYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHK 513 (786)
Q Consensus 435 -~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (786)
...+.+.++++|+.++++-|....+++.+|+.++.+++++.+...|++++..++...|
T Consensus 377 le~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cP--------------------- 435 (677)
T KOG1915|consen 377 LEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCP--------------------- 435 (677)
T ss_pred HHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCC---------------------
Confidence 7899999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHH
Q 003918 514 SLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLS 593 (786)
Q Consensus 514 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~ 593 (786)
...++..|+.++.++++++..+.+|++.|+..|.++.+|..+|.+...+|+.+.|..+|+-|+....-.....+|..|++
T Consensus 436 K~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYId 515 (677)
T KOG1915|consen 436 KDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYID 515 (677)
T ss_pred chhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhh
Confidence 46888999999999999999999999999999999999999999999999999999999999986111122358999998
Q ss_pred HHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHH-----cC-----------CHHHHHHHHHHHHh
Q 003918 594 KFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEED-----YG-----------LAKRAMKVYDQATK 652 (786)
Q Consensus 594 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~-----~g-----------~~~~A~~~~~~~l~ 652 (786)
+-. ..|.+++|+.+|++.++..+. ..+|.++|.++.. .| +...|+.+|+++..
T Consensus 516 FEi---~~~E~ekaR~LYerlL~rt~h---~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 516 FEI---EEGEFEKARALYERLLDRTQH---VKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred hhh---hcchHHHHHHHHHHHHHhccc---chHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 765 448899999999999999885 5699999999873 33 44556666666554
No 3
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=100.00 E-value=2e-42 Score=350.60 Aligned_cols=608 Identities=20% Similarity=0.283 Sum_probs=476.9
Q ss_pred CCcchHhHHHHhhCCCChHhHHHHHHHH-HcCChhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccCCCCCchhHHHHH
Q 003918 10 SEDDLLYEEELLRNPFSLKLWWRYLVAK-REAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLN 88 (786)
Q Consensus 10 ~~~~~~~~~~l~~~p~~~~~w~~~~~~~-~~~~~~~~~~~~~~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~ 88 (786)
-+...+++...+.||.+++.|+.-++.+ ..+.++-|+.+-.+..+.+|.|.++|+.-+++ +..+.|.
T Consensus 268 kKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiRL------------hp~d~aK 335 (913)
T KOG0495|consen 268 KKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIRL------------HPPDVAK 335 (913)
T ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHhc------------CChHHHH
Confidence 3567788999999999999999998865 58899999999999999999999999988887 4456799
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHhcCCChHHHHHHHHHHHcc
Q 003918 89 NTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKY 168 (786)
Q Consensus 89 ~~~~~al~~~p~~~~~w~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~w~~~~~~~~~~~~~~~~A~~~~~~~l~~ 168 (786)
.+.-.|++..|.++.+|+..+..+.. ...-.+++.+||+..|.+ ..+|.....+ .+. +.|+.++.+++++
T Consensus 336 ~vvA~Avr~~P~Sv~lW~kA~dLE~~---~~~K~RVlRKALe~iP~s--v~LWKaAVel----E~~-~darilL~rAvec 405 (913)
T KOG0495|consen 336 TVVANAVRFLPTSVRLWLKAADLESD---TKNKKRVLRKALEHIPRS--VRLWKAAVEL----EEP-EDARILLERAVEC 405 (913)
T ss_pred HHHHHHHHhCCCChhhhhhHHhhhhH---HHHHHHHHHHHHHhCCch--HHHHHHHHhc----cCh-HHHHHHHHHHHHh
Confidence 99999999999999999999998753 334467899999999975 8999998865 456 7799999999999
Q ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHhcccccccCCcHHHHHHhhhhccCch-
Q 003918 169 DPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDE- 247 (786)
Q Consensus 169 ~p~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~- 247 (786)
+|.+.+-+ -.+.+..-|+.|.++++++-+. -|++..+|.....++..+++. .-++.++.+++.....+
T Consensus 406 cp~s~dLw-lAlarLetYenAkkvLNkaRe~-------iptd~~IWitaa~LEE~ngn~---~mv~kii~rgl~~L~~ng 474 (913)
T KOG0495|consen 406 CPQSMDLW-LALARLETYENAKKVLNKAREI-------IPTDREIWITAAKLEEANGNV---DMVEKIIDRGLSELQANG 474 (913)
T ss_pred ccchHHHH-HHHHHHHHHHHHHHHHHHHHhh-------CCCChhHHHHHHHHHHhcCCH---HHHHHHHHHHHHHHhhcc
Confidence 99986433 3344566777888877777542 355666777777777766642 23455555554332211
Q ss_pred ---hHHHHHHHHHHHHhhccHHHHHHHHHHHhhccCchhcHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcc
Q 003918 248 ---VGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAE 324 (786)
Q Consensus 248 ---~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (786)
.-+.|+.-|.-....|-.-.+..+....+...-...+...-
T Consensus 475 v~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~t------------------------------------ 518 (913)
T KOG0495|consen 475 VEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKST------------------------------------ 518 (913)
T ss_pred eeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhH------------------------------------
Confidence 02345544444444444433333333333221111111111
Q ss_pred hhhhHhhhhhhHHHHHHhHhcccccCccchHHHHHHHHHhhhhhchhhhhhhhhhcCCCCHHHHHHHHHhhc--CCchhH
Q 003918 325 DEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE--GNPTKQ 402 (786)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a 402 (786)
|+.+. +....+.+++ -.+++++. +++.+|..-..|+..+.+.+ |..++.
T Consensus 519 -----------------------w~~da-~~~~k~~~~~---carAVya~--alqvfp~k~slWlra~~~ek~hgt~Esl 569 (913)
T KOG0495|consen 519 -----------------------WLDDA-QSCEKRPAIE---CARAVYAH--ALQVFPCKKSLWLRAAMFEKSHGTRESL 569 (913)
T ss_pred -----------------------HhhhH-HHHHhcchHH---HHHHHHHH--HHhhccchhHHHHHHHHHHHhcCcHHHH
Confidence 11111 0111111111 11223333 48899999999999999886 889999
Q ss_pred HHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHH
Q 003918 403 ILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALE 482 (786)
Q Consensus 403 ~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~ 482 (786)
..++++++.. ++....+|++++..+...|+...|+.++.++++.+|++- .+|+....++..+.++++|+.
T Consensus 570 ~Allqkav~~------~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnse----eiwlaavKle~en~e~eraR~ 639 (913)
T KOG0495|consen 570 EALLQKAVEQ------CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSE----EIWLAAVKLEFENDELERARD 639 (913)
T ss_pred HHHHHHHHHh------CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcH----HHHHHHHHHhhccccHHHHHH
Confidence 9999999964 337899999999999999999999999999999999986 999999999999999999999
Q ss_pred HHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHc
Q 003918 483 LMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEH 562 (786)
Q Consensus 483 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 562 (786)
+|.++....+ ..++|+.++.++..+++.++|+.+++.+++..|+.+.+|+++|.++.+.
T Consensus 640 llakar~~sg---------------------TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~ 698 (913)
T KOG0495|consen 640 LLAKARSISG---------------------TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQM 698 (913)
T ss_pred HHHHHhccCC---------------------cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHH
Confidence 9999998777 6799999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHH
Q 003918 563 KYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKR 642 (786)
Q Consensus 563 g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~ 642 (786)
++.+.|.+.|...++. +|..+.+|..+. .+.+. .|++..||.+++++.-.+|+ +..+|+..+.++.+.|+.+.
T Consensus 699 ~~ie~aR~aY~~G~k~--cP~~ipLWllLa-kleEk--~~~~~rAR~ildrarlkNPk--~~~lwle~Ir~ElR~gn~~~ 771 (913)
T KOG0495|consen 699 ENIEMAREAYLQGTKK--CPNSIPLWLLLA-KLEEK--DGQLVRARSILDRARLKNPK--NALLWLESIRMELRAGNKEQ 771 (913)
T ss_pred HHHHHHHHHHHhcccc--CCCCchHHHHHH-HHHHH--hcchhhHHHHHHHHHhcCCC--cchhHHHHHHHHHHcCCHHH
Confidence 9999999999999997 799999999754 55543 36899999999999999999 67999999999999999999
Q ss_pred HHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 003918 643 AMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVF 722 (786)
Q Consensus 643 A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 722 (786)
|..++.++|+.+|++.. +|..-+.++-+-+. +..+..|++. ... ++++.+..+.+++....+++|+++|.+
T Consensus 772 a~~lmakALQecp~sg~--LWaEaI~le~~~~r----kTks~DALkk-ce~--dphVllaia~lfw~e~k~~kar~Wf~R 842 (913)
T KOG0495|consen 772 AELLMAKALQECPSSGL--LWAEAIWLEPRPQR----KTKSIDALKK-CEH--DPHVLLAIAKLFWSEKKIEKAREWFER 842 (913)
T ss_pred HHHHHHHHHHhCCccch--hHHHHHHhccCccc----chHHHHHHHh-ccC--CchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998544 44444443333344 3334455555 444 467999999999999999999999999
Q ss_pred HHccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh
Q 003918 723 ASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASY 766 (786)
Q Consensus 723 al~~~~p~~~~~~~~~~~~~~~~~G~~~~a~~~~~~~~~~~~~~ 766 (786)
|++. +|+ .++.|-.+..|+.++|+.+.-++++ .++....|
T Consensus 843 avk~-d~d-~GD~wa~fykfel~hG~eed~kev~--~~c~~~EP 882 (913)
T KOG0495|consen 843 AVKK-DPD-NGDAWAWFYKFELRHGTEEDQKEVL--KKCETAEP 882 (913)
T ss_pred HHcc-CCc-cchHHHHHHHHHHHhCCHHHHHHHH--HHHhccCC
Confidence 9997 899 6999999999999999999999999 56666555
No 4
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.9e-39 Score=388.14 Aligned_cols=676 Identities=14% Similarity=0.099 Sum_probs=482.9
Q ss_pred CcchHhHHHHhhCCCChHhHHHHHHH-HHcCChhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccCCCCCchhHHHHHH
Q 003918 11 EDDLLYEEELLRNPFSLKLWWRYLVA-KREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNN 89 (786)
Q Consensus 11 ~~~~~~~~~l~~~p~~~~~w~~~~~~-~~~~~~~~~~~~~~~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~ 89 (786)
+....|++++..+|.+...|..++.. ...++++++...++++++.+|.+...|...+...... |++++|..
T Consensus 143 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------g~~~~A~~ 214 (899)
T TIGR02917 143 LAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSL--------GNIELALA 214 (899)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhc--------CCHHHHHH
Confidence 44566788888899998888888664 4578899999999999999999999998888877755 88999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHhcCCChHHHHHHHHHHHccC
Q 003918 90 TFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYD 169 (786)
Q Consensus 90 ~~~~al~~~p~~~~~w~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~w~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 169 (786)
.|++++..+|.++.+|..++..+...|+++.|...+++++...|.+ ...+...+......|++ ++|...|+++++.+
T Consensus 215 ~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~A~~~~~~~l~~~ 291 (899)
T TIGR02917 215 AYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNS--PLAHYLKALVDFQKKNY-EDARETLQDALKSA 291 (899)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--chHHHHHHHHHHHhcCH-HHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999988864 45555556666678888 99999999999988
Q ss_pred CCCHHHHH---HHHHhcCCHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHhcccccccCCcHHHHHHhhhhccCc
Q 003918 170 PSHIEDFI---EFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTD 246 (786)
Q Consensus 170 p~~~~~~~---~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 246 (786)
|++...+. ..+...|++++|...+++++... |.....+..++..+...++.. .+...++..+...|.
T Consensus 292 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~la~~~~~~g~~~---~A~~~~~~~~~~~~~ 361 (899)
T TIGR02917 292 PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-------PNSHQARRLLASIQLRLGRVD---EAIATLSPALGLDPD 361 (899)
T ss_pred CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHCCCHH---HHHHHHHHHHhcCCC
Confidence 88764332 55668899999999999988542 344455656665555554432 344566677777777
Q ss_pred hhHHHHHHHHHHHHhhccHHHHHHHHHHHhhccCchhcHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchh
Q 003918 247 EVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDE 326 (786)
Q Consensus 247 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (786)
+ +..+..++..+...|++++|...|++++...|+... .+......... .++
T Consensus 362 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~--------~~~----------------- 412 (899)
T TIGR02917 362 D-PAALSLLGEAYLALGDFEKAAEYLAKATELDPENAA---ARTQLGISKLS--------QGD----------------- 412 (899)
T ss_pred C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHh--------CCC-----------------
Confidence 6 778899999999999999999999999987775432 22211111100 000
Q ss_pred hhHhhhhhhHHHHHHhHhcccccCccchHHHHHHHHHhhhhhchhhhhhhhhhcCCCCHHHHHHHHHhhc--CCchhHHH
Q 003918 327 DIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE--GNPTKQIL 404 (786)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~ 404 (786)
...++..++......... ...........+............+.+....|.++..|..++.++. |++++|+.
T Consensus 413 -----~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 486 (899)
T TIGR02917 413 -----PSEAIADLETAAQLDPEL-GRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKARE 486 (899)
T ss_pred -----hHHHHHHHHHHHhhCCcc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHH
Confidence 001111111111100000 0000000000000000011122233345667777777777777664 77888888
Q ss_pred HHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHH
Q 003918 405 TYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELM 484 (786)
Q Consensus 405 ~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~ 484 (786)
.|++++. .+| .++..+..++.++...|++++|+..|++++..+|.+. ..+..++.++.+.|++++|+.++
T Consensus 487 ~~~~a~~-~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~ 556 (899)
T TIGR02917 487 AFEKALS-IEP-----DFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNL----RAILALAGLYLRTGNEEEAVAWL 556 (899)
T ss_pred HHHHHHh-hCC-----CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcH----HHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888774 455 5667777888888888888888888888888777776 77777777777788888888888
Q ss_pred HHHhcCCchHHhh---------hhh-ccCChhHH----HHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHH
Q 003918 485 RRATAEPSVEVRR---------RVA-ADGNEPVQ----MKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQ 550 (786)
Q Consensus 485 ~~al~~~~~~~~~---------~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 550 (786)
++++...|..... ..+ .+.+.... ...+.++..|..++.++...|++++|+..|+++++..|.++.
T Consensus 557 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 636 (899)
T TIGR02917 557 EKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSAL 636 (899)
T ss_pred HHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 8877766632100 000 11111111 112356778888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHH
Q 003918 551 IIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQY 630 (786)
Q Consensus 551 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 630 (786)
++..++.++...|++++|+..|++++.. +|++...|..++..+. ..|++++|..+++++.+..|. +..++..+
T Consensus 637 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~ 709 (899)
T TIGR02917 637 ALLLLADAYAVMKNYAKAITSLKRALEL--KPDNTEAQIGLAQLLL---AAKRTESAKKIAKSLQKQHPK--AALGFELE 709 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhhCcC--ChHHHHHH
Confidence 8888888888888888888888888886 6888888877665444 347888888888888888887 56778888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHc
Q 003918 631 AKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSL 710 (786)
Q Consensus 631 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~ 710 (786)
+.++...|++++|...|++++...|++ ..+..++..+.+.|++++|...+++++.. .|+ ++.++..++.++...
T Consensus 710 ~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~--~~~~~~~la~~~~~~ 783 (899)
T TIGR02917 710 GDLYLRQKDYPAAIQAYRKALKRAPSS---QNAIKLHRALLASGNTAEAVKTLEAWLKT-HPN--DAVLRTALAELYLAQ 783 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCC--CHHHHHHHHHHHHHC
Confidence 888888899999999999998888865 23334445556788899999999998888 777 456888888888889
Q ss_pred CChHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhhhhH
Q 003918 711 GEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASYSQVI 770 (786)
Q Consensus 711 g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~G~~~~a~~~~~~~~~~~~~~~~~~ 770 (786)
|++++|..+|+++++. .|+ +...+..++..+...|+ .+|+.+++ +.+...+++..
T Consensus 784 g~~~~A~~~~~~~~~~-~p~-~~~~~~~l~~~~~~~~~-~~A~~~~~--~~~~~~~~~~~ 838 (899)
T TIGR02917 784 KDYDKAIKHYRTVVKK-APD-NAVVLNNLAWLYLELKD-PRALEYAE--KALKLAPNIPA 838 (899)
T ss_pred cCHHHHHHHHHHHHHh-CCC-CHHHHHHHHHHHHhcCc-HHHHHHHH--HHHhhCCCCcH
Confidence 9999999999999886 676 58888888888888888 77888884 33333443333
No 5
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.9e-39 Score=389.32 Aligned_cols=645 Identities=16% Similarity=0.089 Sum_probs=504.4
Q ss_pred CCcchHhHHHHhhCCCChHhHHHHHH-HHHcCChhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccCCCCCchhHHHHH
Q 003918 10 SEDDLLYEEELLRNPFSLKLWWRYLV-AKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLN 88 (786)
Q Consensus 10 ~~~~~~~~~~l~~~p~~~~~w~~~~~-~~~~~~~~~~~~~~~~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~ 88 (786)
++....+++++..+|.+...+..... ....++++++...|+++++.+|.....+...+...... |++++|.
T Consensus 244 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~--------g~~~~A~ 315 (899)
T TIGR02917 244 EEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQL--------GNLEQAY 315 (899)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHc--------CCHHHHH
Confidence 44556788899999988776655533 34578899999999999999999888888777776654 8999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHhcCCChHHHHHHHHHHHcc
Q 003918 89 NTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKY 168 (786)
Q Consensus 89 ~~~~~al~~~p~~~~~w~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~w~~~~~~~~~~~~~~~~A~~~~~~~l~~ 168 (786)
..|+++++..|.++.++..++..+...|+++.|...+++++..+|.+ ..+|...+..+...|++ ++|...|+++++.
T Consensus 316 ~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~ 392 (899)
T TIGR02917 316 QYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDD--PAALSLLGEAYLALGDF-EKAAEYLAKATEL 392 (899)
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHCCCH-HHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999998865 77888888888899999 9999999999999
Q ss_pred CCCCHHHHH---HHHHhcCCHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHhcccccccCCcHHHHHHhhhhccC
Q 003918 169 DPSHIEDFI---EFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFT 245 (786)
Q Consensus 169 ~p~~~~~~~---~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 245 (786)
+|.+...+. ..+...|++++|++.+++++... |.....+..++..+...++.. .+...++..+...|
T Consensus 393 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~l~~~~~~~~~~~---~A~~~~~~~~~~~~ 462 (899)
T TIGR02917 393 DPENAAARTQLGISKLSQGDPSEAIADLETAAQLD-------PELGRADLLLILSYLRSGQFD---KALAAAKKLEKKQP 462 (899)
T ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-------CcchhhHHHHHHHHHhcCCHH---HHHHHHHHHHHhCC
Confidence 998875443 56778899999999999998643 233334444444444444432 34556777777788
Q ss_pred chhHHHHHHHHHHHHhhccHHHHHHHHHHHhhccCchhcHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcch
Q 003918 246 DEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAED 325 (786)
Q Consensus 246 ~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (786)
++ +..|..+|..|...|++++|...|++++...|+... .+......... .+.
T Consensus 463 ~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~~la~~~~~--------~g~---------------- 514 (899)
T TIGR02917 463 DN-ASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFP---AAANLARIDIQ--------EGN---------------- 514 (899)
T ss_pred CC-cHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHH---HHHHHHHHHHH--------CCC----------------
Confidence 76 788999999999999999999999999987776432 22222111110 000
Q ss_pred hhhHhhhhhhHHHHHHhHhcccccCccchHHHHHHHHHhhhh--hchhhhhhhhhhcCCCCHHHHHHHHHhhc--CCchh
Q 003918 326 EDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMN--RRPELANSVLLRQNPHNVEQWHRRVKIFE--GNPTK 401 (786)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~ 401 (786)
...+...+++.+... ++.......+.......+ .........++..+|.+...+..++..+. |++++
T Consensus 515 ------~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 585 (899)
T TIGR02917 515 ------PDDAIQRFEKVLTID---PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKK 585 (899)
T ss_pred ------HHHHHHHHHHHHHhC---cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHH
Confidence 001111111111100 011111111111110000 11122333456778999988888888775 88999
Q ss_pred HHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHH
Q 003918 402 QILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGAL 481 (786)
Q Consensus 402 a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~ 481 (786)
|+..+++++. ..| .++..|..++..+...|++++|+..|++++..+|.++ ..|..++.++...|++++|.
T Consensus 586 A~~~~~~~~~-~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~ 655 (899)
T TIGR02917 586 ALAILNEAAD-AAP-----DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSA----LALLLLADAYAVMKNYAKAI 655 (899)
T ss_pred HHHHHHHHHH-cCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHcCCHHHHH
Confidence 9999999884 444 5788999999999999999999999999999999887 88889999999999999999
Q ss_pred HHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHH
Q 003918 482 ELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEE 561 (786)
Q Consensus 482 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 561 (786)
.+|++++...| ++...|..++.++...|++++|..+++++.+..|.++..+..+|.++..
T Consensus 656 ~~~~~~~~~~~--------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (899)
T TIGR02917 656 TSLKRALELKP--------------------DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLR 715 (899)
T ss_pred HHHHHHHhcCC--------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHH
Confidence 99999999888 7788999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHH
Q 003918 562 HKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAK 641 (786)
Q Consensus 562 ~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~ 641 (786)
.|++++|+..|++++.. .|.+ ..+..++..+. ..|++++|...++++++..|+ +..++..++.++...|+.+
T Consensus 716 ~g~~~~A~~~~~~~~~~--~~~~-~~~~~l~~~~~---~~g~~~~A~~~~~~~l~~~~~--~~~~~~~la~~~~~~g~~~ 787 (899)
T TIGR02917 716 QKDYPAAIQAYRKALKR--APSS-QNAIKLHRALL---ASGNTAEAVKTLEAWLKTHPN--DAVLRTALAELYLAQKDYD 787 (899)
T ss_pred CCCHHHHHHHHHHHHhh--CCCc-hHHHHHHHHHH---HCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCcCHH
Confidence 99999999999999997 4655 44554444333 458899999999999999998 6789999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 003918 642 RAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYV 721 (786)
Q Consensus 642 ~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 721 (786)
+|..+|+++++..|+++......+++. ...|+ ++|+.++++++.. .|+ ++..+..+|.++...|++++|.++|+
T Consensus 788 ~A~~~~~~~~~~~p~~~~~~~~l~~~~--~~~~~-~~A~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~g~~~~A~~~~~ 861 (899)
T TIGR02917 788 KAIKHYRTVVKKAPDNAVVLNNLAWLY--LELKD-PRALEYAEKALKL-APN--IPAILDTLGWLLVEKGEADRALPLLR 861 (899)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHH--HhcCc-HHHHHHHHHHHhh-CCC--CcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999998655554444444 46777 8899999999998 887 45688899999999999999999999
Q ss_pred HHHccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003918 722 FASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRI 758 (786)
Q Consensus 722 ~al~~~~p~~~~~~~~~~~~~~~~~G~~~~a~~~~~~ 758 (786)
++++. +|. +...+..++..+.+.|+.++|.++++.
T Consensus 862 ~a~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 896 (899)
T TIGR02917 862 KAVNI-APE-AAAIRYHLALALLATGRKAEARKELDK 896 (899)
T ss_pred HHHhh-CCC-ChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99997 677 689999999999999999999999853
No 6
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=100.00 E-value=6.2e-35 Score=296.40 Aligned_cols=578 Identities=17% Similarity=0.201 Sum_probs=334.3
Q ss_pred CChhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcHH
Q 003918 40 APFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFIT 119 (786)
Q Consensus 40 ~~~~~~~~~~~~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~~ 119 (786)
++.++++.++....+.+|.++..|+.-++++-.. |+++.|+.+..+.-+.+|.|.++|+..++. -..+
T Consensus 265 ~DikKaR~llKSvretnP~hp~gWIAsArLEEva--------gKl~~Ar~~I~~GCe~cprSeDvWLeaiRL----hp~d 332 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETNPKHPPGWIASARLEEVA--------GKLSVARNLIMKGCEECPRSEDVWLEAIRL----HPPD 332 (913)
T ss_pred HHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHh--------hHHHHHHHHHHHHHhhCCchHHHHHHHHhc----CChH
Confidence 4567888888888888999999998888887654 888999999999888899999999877765 3456
Q ss_pred HHHHHHHHHHhhCCCCcchhhHHHHHHHHHhcCCChHHHHHHHHHHHccCCCCHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 003918 120 KARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLND 199 (786)
Q Consensus 120 ~A~~~~~~al~~~p~~~~~~~w~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~g~~~~A~~~~~~~l~~ 199 (786)
.|..+...|+..+|.+ ..+|...+..+....+. .++++++|+..|.+. .+....+...+.+.|+..+.++++.
T Consensus 333 ~aK~vvA~Avr~~P~S--v~lW~kA~dLE~~~~~K----~RVlRKALe~iP~sv-~LWKaAVelE~~~darilL~rAvec 405 (913)
T KOG0495|consen 333 VAKTVVANAVRFLPTS--VRLWLKAADLESDTKNK----KRVLRKALEHIPRSV-RLWKAAVELEEPEDARILLERAVEC 405 (913)
T ss_pred HHHHHHHHHHHhCCCC--hhhhhhHHhhhhHHHHH----HHHHHHHHHhCCchH-HHHHHHHhccChHHHHHHHHHHHHh
Confidence 6888888999999975 88898888776644444 788889999888875 3445556666666777777777743
Q ss_pred CCccccCCCcchHHHHHHHHHHhcccccccCCcHHHHHHhhhhccCchhHHHHHHHHHHHHhhccHHHHHHHHHHHhhcc
Q 003918 200 DQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTV 279 (786)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 279 (786)
-|.+.++|..+.+++.-. .+...+.++.+..|.+ +.+|+.-+.+...+|..+...++..+++...
T Consensus 406 -------cp~s~dLwlAlarLetYe-------nAkkvLNkaRe~iptd-~~IWitaa~LEE~ngn~~mv~kii~rgl~~L 470 (913)
T KOG0495|consen 406 -------CPQSMDLWLALARLETYE-------NAKKVLNKAREIIPTD-REIWITAAKLEEANGNVDMVEKIIDRGLSEL 470 (913)
T ss_pred -------ccchHHHHHHHHHHHHHH-------HHHHHHHHHHhhCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 356677788777766532 2445677777777776 7788888888877887777777777777542
Q ss_pred Cchh---cHHHHHHH-HHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhHhcccccCccchH
Q 003918 280 VTVR---DFSVIFDS-YSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDV 355 (786)
Q Consensus 280 p~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (786)
...- +. .-|.. ....+. .+. +......
T Consensus 471 ~~ngv~i~r-dqWl~eAe~~e~---------ags---------------------------------------v~TcQAI 501 (913)
T KOG0495|consen 471 QANGVEINR-DQWLKEAEACED---------AGS---------------------------------------VITCQAI 501 (913)
T ss_pred hhcceeecH-HHHHHHHHHHhh---------cCC---------------------------------------hhhHHHH
Confidence 1100 00 00000 000000 000 0000000
Q ss_pred HHHHHHHHhhhhhchhhhhhhhhhcCCCCHHHHHHHHHhhc--CCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHH
Q 003918 356 DLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLY 433 (786)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~ 433 (786)
....+ .+.....+....|+.-++.+. +-.+-|+.+|..+|+ ..| ....+|...+.+.
T Consensus 502 --i~avi-------------gigvEeed~~~tw~~da~~~~k~~~~~carAVya~alq-vfp-----~k~slWlra~~~e 560 (913)
T KOG0495|consen 502 --IRAVI-------------GIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQ-VFP-----CKKSLWLRAAMFE 560 (913)
T ss_pred --HHHHH-------------hhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHh-hcc-----chhHHHHHHHHHH
Confidence 00000 011223344445555555554 334555555555553 333 3445555555555
Q ss_pred HHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhh
Q 003918 434 ETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHK 513 (786)
Q Consensus 434 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (786)
...|..+.-..+|++++...|... .+|+.++......|+...|+.++.++++..| +
T Consensus 561 k~hgt~Esl~Allqkav~~~pkae----~lwlM~ake~w~agdv~~ar~il~~af~~~p--------------------n 616 (913)
T KOG0495|consen 561 KSHGTRESLEALLQKAVEQCPKAE----ILWLMYAKEKWKAGDVPAARVILDQAFEANP--------------------N 616 (913)
T ss_pred HhcCcHHHHHHHHHHHHHhCCcch----hHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC--------------------C
Confidence 555555555555666555555554 5555555555555566666666665555555 4
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHH
Q 003918 514 SLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLS 593 (786)
Q Consensus 514 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~ 593 (786)
+..+|..-..++....++++|+.+|.++....| .+.+|+..+.++..+|+.++|+.+++++++. .|+.+.+|++.+.
T Consensus 617 seeiwlaavKle~en~e~eraR~llakar~~sg-TeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQ 693 (913)
T KOG0495|consen 617 SEEIWLAAVKLEFENDELERARDLLAKARSISG-TERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQ 693 (913)
T ss_pred cHHHHHHHHHHhhccccHHHHHHHHHHHhccCC-cchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhH
Confidence 555565555555555556666666665555433 4455555566555556666666666666654 3555555555443
Q ss_pred HHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHh
Q 003918 594 KFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEI 673 (786)
Q Consensus 594 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~ 673 (786)
.+. + +++++.|+..|...+...|. +..+|..++.++.+.|++.+|+.+++++.-.+|++ ..+|...+.++.+.
T Consensus 694 i~e-~--~~~ie~aR~aY~~G~k~cP~--~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~--~~lwle~Ir~ElR~ 766 (913)
T KOG0495|consen 694 IEE-Q--MENIEMAREAYLQGTKKCPN--SIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKN--ALLWLESIRMELRA 766 (913)
T ss_pred HHH-H--HHHHHHHHHHHHhccccCCC--CchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCc--chhHHHHHHHHHHc
Confidence 322 2 24455566666666655555 55566666666655556666666666665555553 23334444444555
Q ss_pred cChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003918 674 FGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFR 753 (786)
Q Consensus 674 ~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~G~~~~a~ 753 (786)
|+.+.|..+..+|++. +|++ ...|..-..++-+.++.-++...+.++ ..+ +-+....+.++-.....++|+
T Consensus 767 gn~~~a~~lmakALQe-cp~s--g~LWaEaI~le~~~~rkTks~DALkkc----e~d--phVllaia~lfw~e~k~~kar 837 (913)
T KOG0495|consen 767 GNKEQAELLMAKALQE-CPSS--GLLWAEAIWLEPRPQRKTKSIDALKKC----EHD--PHVLLAIAKLFWSEKKIEKAR 837 (913)
T ss_pred CCHHHHHHHHHHHHHh-CCcc--chhHHHHHHhccCcccchHHHHHHHhc----cCC--chhHHHHHHHHHHHHHHHHHH
Confidence 5666666666666655 5552 234444444444444433333333332 111 223334444433444555566
Q ss_pred HHHHHHHHHHhhh
Q 003918 754 EMLRIKRSVSASY 766 (786)
Q Consensus 754 ~~~~~~~~~~~~~ 766 (786)
+.| -|.++..+
T Consensus 838 ~Wf--~Ravk~d~ 848 (913)
T KOG0495|consen 838 EWF--ERAVKKDP 848 (913)
T ss_pred HHH--HHHHccCC
Confidence 665 34444443
No 7
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=3.5e-35 Score=287.73 Aligned_cols=454 Identities=23% Similarity=0.354 Sum_probs=383.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHhcCCChHHHHHHHHHHHc
Q 003918 88 NNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLK 167 (786)
Q Consensus 88 ~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~w~~~~~~~~~~~~~~~~A~~~~~~~l~ 167 (786)
++.|+-.+....-+...|+.|+.++..++++..|+++|+|||..+..+ ..+|..|+.+..+.... ..|+.++++++.
T Consensus 59 RkefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~--itLWlkYae~Emknk~v-NhARNv~dRAvt 135 (677)
T KOG1915|consen 59 RKEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRN--ITLWLKYAEFEMKNKQV-NHARNVWDRAVT 135 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccc--chHHHHHHHHHHhhhhH-hHHHHHHHHHHH
Confidence 578888888888899999999999999999999999999999988754 89999999999988888 999999999988
Q ss_pred cCCCCHHHHHHHHHhcCCHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHhcccccccCCcHHHHHHhhhhccCch
Q 003918 168 YDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDE 247 (786)
Q Consensus 168 ~~p~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 247 (786)
.-|-
T Consensus 136 ~lPR---------------------------------------------------------------------------- 139 (677)
T KOG1915|consen 136 ILPR---------------------------------------------------------------------------- 139 (677)
T ss_pred hcch----------------------------------------------------------------------------
Confidence 6554
Q ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHhhccCchhcHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhh
Q 003918 248 VGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDED 327 (786)
Q Consensus 248 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (786)
+.++|+.+..+....|+..-|+++|++=+.-.|+. .-|.+|+.|+...
T Consensus 140 VdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~e----qaW~sfI~fElRy---------------------------- 187 (677)
T KOG1915|consen 140 VDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDE----QAWLSFIKFELRY---------------------------- 187 (677)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHh----------------------------
Confidence 14467777767777788888899999888776654 3777777776421
Q ss_pred hHhhhhhhHHHHHHhHhcccccCccchHHHHHHHHHhhhhhchhhhhhhhhhcCCCCHHHHHHHHHhhcCCchhHHHHHH
Q 003918 328 IRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYT 407 (786)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~ 407 (786)
+..+.|..+|+
T Consensus 188 ---------------------------------------------------------------------keieraR~IYe 198 (677)
T KOG1915|consen 188 ---------------------------------------------------------------------KEIERARSIYE 198 (677)
T ss_pred ---------------------------------------------------------------------hHHHHHHHHHH
Confidence 12355788888
Q ss_pred HHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 003918 408 EAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRA 487 (786)
Q Consensus 408 ~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 487 (786)
+-+ ...| .+..|+.+|.+..+.|+...|+++|++|+....++. ....+++..+.++.+++.++.|+.+|+=+
T Consensus 199 rfV-~~HP------~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~-~~e~lfvaFA~fEe~qkE~ERar~iykyA 270 (677)
T KOG1915|consen 199 RFV-LVHP------KVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDE-EAEILFVAFAEFEERQKEYERARFIYKYA 270 (677)
T ss_pred HHh-eecc------cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877 4555 588999999999999999999999999999776653 33478899999999999999999999999
Q ss_pred hcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHH--------HHHHHHHHhhccCCHHHHHHHHHHH
Q 003918 488 TAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLEST--------RAVYERILDLRIATPQIIINYALLL 559 (786)
Q Consensus 488 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A--------~~~~~~al~~~p~~~~~~~~~~~~~ 559 (786)
+..-|.. ....++..+..++.+.|+.... +--|++.++.+|-+-++|+.+..+.
T Consensus 271 ld~~pk~------------------raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~ 332 (677)
T KOG1915|consen 271 LDHIPKG------------------RAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLE 332 (677)
T ss_pred HHhcCcc------------------cHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHH
Confidence 9876610 2367888888898888875332 3468888999999999999999999
Q ss_pred HHcccHHHHHHHHHHHHhhcCCCChH---------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccC--cHHHHH
Q 003918 560 EEHKYFEDAFRVYERGVKIFKYPHVK---------DIWVTYLSKFVKRYGKTKLERARELFENAVETAPADA--VKPLYL 628 (786)
Q Consensus 560 ~~~g~~~~A~~~~~~al~~~~~p~~~---------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~ 628 (786)
...|+.+...++|++|+... |... .+|.+|+ ++..+...+.+.++++|+.|+++-|... -..+|+
T Consensus 333 e~~g~~~~Ire~yErAIanv--pp~~ekr~W~RYIYLWinYa--lyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWl 408 (677)
T KOG1915|consen 333 ESVGDKDRIRETYERAIANV--PPASEKRYWRRYIYLWINYA--LYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWL 408 (677)
T ss_pred HhcCCHHHHHHHHHHHHccC--CchhHHHHHHHHHHHHHHHH--HHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHH
Confidence 99999999999999999974 4322 3666664 3333456789999999999999999742 256999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 003918 629 QYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEK 708 (786)
Q Consensus 629 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~ 708 (786)
.+|.++.++.+++.|++++-.++-.+|. ..++.+|+..+.+.++++..|.+|++-++. .|. +...|..||.++.
T Consensus 409 myA~feIRq~~l~~ARkiLG~AIG~cPK---~KlFk~YIelElqL~efDRcRkLYEkfle~-~Pe--~c~~W~kyaElE~ 482 (677)
T KOG1915|consen 409 MYAQFEIRQLNLTGARKILGNAIGKCPK---DKLFKGYIELELQLREFDRCRKLYEKFLEF-SPE--NCYAWSKYAELET 482 (677)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhccCCc---hhHHHHHHHHHHHHhhHHHHHHHHHHHHhc-ChH--hhHHHHHHHHHHH
Confidence 9999999999999999999999999996 458899999999999999999999999999 888 4669999999999
Q ss_pred HcCChHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003918 709 SLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLR 757 (786)
Q Consensus 709 ~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~G~~~~a~~~~~ 757 (786)
.+|+++.|+.+|+-|++....+....+|..+++|+...|.++.|+.+++
T Consensus 483 ~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYe 531 (677)
T KOG1915|consen 483 SLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYE 531 (677)
T ss_pred HhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHH
Confidence 9999999999999999974446668999999999999999999999995
No 8
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=2.6e-34 Score=346.03 Aligned_cols=604 Identities=12% Similarity=0.058 Sum_probs=428.4
Q ss_pred HHcCChhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCCHHHH-----------
Q 003918 37 KREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIW----------- 105 (786)
Q Consensus 37 ~~~~~~~~~~~~~~~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~w----------- 105 (786)
+..++.+.|...++|++..+|++++++...+.+.... |++++|.+.++++++..|+++.++
T Consensus 39 ~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~--------g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~ 110 (1157)
T PRK11447 39 EATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQ--------GDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTP 110 (1157)
T ss_pred HhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhC--------CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCC
Confidence 4588999999999999999999999999999988765 999999999999999999999875
Q ss_pred -----HHHHHHHHcCCcHHHHHHHHHHHHhhCCCCcchhhHHHH-HHHHHhcCCChHHHHHHHHHHHccCCCCHHH---H
Q 003918 106 -----IMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIY-LRFVEQEGIPIETSLRVYRRYLKYDPSHIED---F 176 (786)
Q Consensus 106 -----~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~w~~~-~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~---~ 176 (786)
+..++.+...|++++|...|++++..+|.+ ..+-..+ ..+....++. ++|+..|+++++.+|.+... +
T Consensus 111 ~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~--~~la~~y~~~~~~~~g~~-~~A~~~L~~ll~~~P~~~~~~~~L 187 (1157)
T PRK11447 111 EGRQALQQARLLATTGRTEEALASYDKLFNGAPPE--LDLAVEYWRLVAKLPAQR-PEAINQLQRLNADYPGNTGLRNTL 187 (1157)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCC--hHHHHHHHHHHhhCCccH-HHHHHHHHHHHHhCCCCHHHHHHH
Confidence 455667778899999999999999998864 2221222 2223345888 99999999999999999854 4
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHH--------------HhcccccccCCcHHHHHHhhhh
Q 003918 177 IEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDL--------------LTTHATEISGLNVDAIIRGGIR 242 (786)
Q Consensus 177 ~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~ 242 (786)
..++...|++++|+..+++++..... .......|...+.. ....++......+...+.....
T Consensus 188 A~ll~~~g~~~eAl~~l~~~~~~~~~----~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~ 263 (1157)
T PRK11447 188 ALLLFSSGRRDEGFAVLEQMAKSPAG----RDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQK 263 (1157)
T ss_pred HHHHHccCCHHHHHHHHHHHhhCCCc----hHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHH
Confidence 47788899999999999999754211 01112233322111 1111111000001111111111
Q ss_pred ccCchhHHHHHHHHHHHHhhccHHHHHHHHHHHhhccCchhcHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCC
Q 003918 243 KFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGS 322 (786)
Q Consensus 243 ~~p~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (786)
..+ ++.......|..+...|++++|+..|++++...|+..+ ++........
T Consensus 264 ~~~-dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~---a~~~Lg~~~~------------------------- 314 (1157)
T PRK11447 264 QLA-DPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSE---ALGALGQAYS------------------------- 314 (1157)
T ss_pred hcc-CcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHH-------------------------
Confidence 111 11112234477788889999999999999988776532 2221111110
Q ss_pred cchhhhHhhhhhhHHHHHHhHhcccccCccchHHHHHHHHHhhhhhchhhhhhhhhhcCCCCHH--HH----------H-
Q 003918 323 AEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVE--QW----------H- 389 (786)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~--~~----------~- 389 (786)
...+...++..+++ +++.+|.+.. .| .
T Consensus 315 ----------------------------~~g~~~eA~~~l~~------------Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 315 ----------------------------QQGDRARAVAQFEK------------ALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred ----------------------------HcCCHHHHHHHHHH------------HHHhCCCccchhHHHHHHHhhhHHHH
Confidence 00112222333333 3666776542 22 1
Q ss_pred -HHHHhh--cCCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHH
Q 003918 390 -RRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCE 466 (786)
Q Consensus 390 -~~~~~~--~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 466 (786)
..+..+ .|++++|+..|++++. .+| .++.++..+|.++...|++++|+..|+++++.+|++. .++..
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~-~~P-----~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~----~a~~~ 424 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQ-VDN-----TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNT----NAVRG 424 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH-hCC-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHH
Confidence 112222 3889999999999994 666 6788888899999999999999999999999989886 77777
Q ss_pred HHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcc
Q 003918 467 WAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRI 546 (786)
Q Consensus 467 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p 546 (786)
++.++. .++.++|..++++.....+..... ... .-....+...+..+...|++++|+..|+++++.+|
T Consensus 425 L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~---------~~~--~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P 492 (1157)
T PRK11447 425 LANLYR-QQSPEKALAFIASLSASQRRSIDD---------IER--SLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP 492 (1157)
T ss_pred HHHHHH-hcCHHHHHHHHHhCCHHHHHHHHH---------HHH--HhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 777764 457888888887654332210000 000 01123566678888899999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHH------------
Q 003918 547 ATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENA------------ 614 (786)
Q Consensus 547 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a------------ 614 (786)
+++.++..++.++...|++++|+..++++++. .|.++..+..++..+. ..++.++|...++++
T Consensus 493 ~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~---~~~~~~~Al~~l~~l~~~~~~~~~~~l 567 (1157)
T PRK11447 493 GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLS---GSDRDRAALAHLNTLPRAQWNSNIQEL 567 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHH---hCCCHHHHHHHHHhCCchhcChhHHHH
Confidence 99999999999999999999999999999986 6888877765432221 234455554444332
Q ss_pred ----------------------------HhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHH
Q 003918 615 ----------------------------VETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIY 666 (786)
Q Consensus 615 ----------------------------l~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~ 666 (786)
++..|. +..++..+|.++...|++++|+..|+++++..|+++......+
T Consensus 568 ~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~--~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la- 644 (1157)
T PRK11447 568 AQRLQSDQVLETANRLRDSGKEAEAEALLRQQPP--STRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLI- 644 (1157)
T ss_pred HHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCC--CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-
Confidence 224566 5678889999999999999999999999999998765554444
Q ss_pred HHHHHHhcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCC-----CHHHHHHHHH
Q 003918 667 IARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRS-----DTEFWNRWHE 741 (786)
Q Consensus 667 ~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~~-----~~~~~~~~~~ 741 (786)
..+...|++++|+..+++++.. .|+ .+..+..++.++...|++++|..+|++++.. .|+. ++.++...+.
T Consensus 645 -~~~~~~g~~~eA~~~l~~ll~~-~p~--~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~~~~~~~~~~a~~~~~~a~ 719 (1157)
T PRK11447 645 -EVDIAQGDLAAARAQLAKLPAT-AND--SLNTQRRVALAWAALGDTAAAQRTFNRLIPQ-AKSQPPSMESALVLRDAAR 719 (1157)
T ss_pred -HHHHHCCCHHHHHHHHHHHhcc-CCC--ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh-CccCCcchhhHHHHHHHHH
Confidence 4445789999999999999988 777 4568888999999999999999999999986 3321 2357777899
Q ss_pred HHHHcCCHHHHHHHHHHH
Q 003918 742 FEVNHGNEDTFREMLRIK 759 (786)
Q Consensus 742 ~~~~~G~~~~a~~~~~~~ 759 (786)
++...|+.++|.+.++..
T Consensus 720 ~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 720 FEAQTGQPQQALETYKDA 737 (1157)
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 999999999999999633
No 9
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=100.00 E-value=1.4e-34 Score=293.46 Aligned_cols=545 Identities=21% Similarity=0.387 Sum_probs=403.2
Q ss_pred CcchHhHHHHhhCCCChHhHHHHHHHHH---------cCChhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccCCCCCc
Q 003918 11 EDDLLYEEELLRNPFSLKLWWRYLVAKR---------EAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITH 81 (786)
Q Consensus 11 ~~~~~~~~~l~~~p~~~~~w~~~~~~~~---------~~~~~~~~~~~~~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~ 81 (786)
...++||++|+..|.+++.|..|+.... ..-+..+..+|+|++..-.+.+.+|..|+++.+.+
T Consensus 44 ~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q-------- 115 (835)
T KOG2047|consen 44 QRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQ-------- 115 (835)
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhc--------
Confidence 4578999999999999999999996432 33467888999999999999999999999999976
Q ss_pred hhHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHhcCCChHHHH
Q 003918 82 PEYETLNNTFERALVTMH--KMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSL 159 (786)
Q Consensus 82 ~~~~~A~~~~~~al~~~p--~~~~~w~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~w~~~~~~~~~~~~~~~~A~ 159 (786)
++....+.+|++||...| .+..+|-.|+.|....+-.+.+.+.|+|-|...|.. -..|+.++...++. ++|.
T Consensus 116 ~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~-----~eeyie~L~~~d~~-~eaa 189 (835)
T KOG2047|consen 116 GLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEA-----REEYIEYLAKSDRL-DEAA 189 (835)
T ss_pred chHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHH-----HHHHHHHHHhccch-HHHH
Confidence 999999999999999998 688999999999999999999999999999999953 46677777777777 7777
Q ss_pred HHHHHHHccC------------------------CCCH------------------------HHHHHHHHhcCCHHHHHH
Q 003918 160 RVYRRYLKYD------------------------PSHI------------------------EDFIEFLVKSKLWQEAAE 191 (786)
Q Consensus 160 ~~~~~~l~~~------------------------p~~~------------------------~~~~~~~~~~g~~~~A~~ 191 (786)
+.|...+..+ |+.. ..+..+|++.|.+++|..
T Consensus 190 ~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarD 269 (835)
T KOG2047|consen 190 QRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARD 269 (835)
T ss_pred HHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 7777666532 2210 134588999999999999
Q ss_pred HHHHHhcCCCccccCCCcchHHHHHHHHHHhc-----------------------------------------------c
Q 003918 192 RLASVLNDDQFYSIKGKTKHRLWLELCDLLTT-----------------------------------------------H 224 (786)
Q Consensus 192 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------------~ 224 (786)
+|++++.... ...+...+|..+++++.. +
T Consensus 270 vyeeai~~v~----tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn 345 (835)
T KOG2047|consen 270 VYEEAIQTVM----TVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQN 345 (835)
T ss_pred HHHHHHHhhe----ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcC
Confidence 9999874210 011222334444333321 1
Q ss_pred ccccc----------CCcH--HHHHHhhhh-----ccCchhHHHHHHHHHHHHhhccHHHHHHHHHHHhhc-cCchhcHH
Q 003918 225 ATEIS----------GLNV--DAIIRGGIR-----KFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMT-VVTVRDFS 286 (786)
Q Consensus 225 ~~~~~----------~~~~--~~~~~~~~~-----~~p~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~-~p~~~~~~ 286 (786)
+.... +..+ ...+..++. +.++.+..+|..+|++|...|+.+.|+.+|++++.. .+...++.
T Consensus 346 ~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa 425 (835)
T KOG2047|consen 346 PHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLA 425 (835)
T ss_pred CccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHH
Confidence 11100 0000 011222222 234555677888888888888888888888888763 45566677
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhHhcccccCccchHHHHHHHHHhhh
Q 003918 287 VIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLM 366 (786)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (786)
.+|..|...+.... ....++..+++
T Consensus 426 ~vw~~waemElrh~-----------------------------------------------------~~~~Al~lm~~-- 450 (835)
T KOG2047|consen 426 EVWCAWAEMELRHE-----------------------------------------------------NFEAALKLMRR-- 450 (835)
T ss_pred HHHHHHHHHHHhhh-----------------------------------------------------hHHHHHHHHHh--
Confidence 77777776553200 00000111111
Q ss_pred hhchhhhhhhhhhcCCCCHHHHHHHHHhhcCCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHH
Q 003918 367 NRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIF 446 (786)
Q Consensus 367 ~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 446 (786)
...-|.+.. ...+.|.. ++.....++..+|..|+++....|-++.-+.+|
T Consensus 451 -----------A~~vP~~~~-----~~~yd~~~--------------pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vY 500 (835)
T KOG2047|consen 451 -----------ATHVPTNPE-----LEYYDNSE--------------PVQARLHRSLKIWSMYADLEESLGTFESTKAVY 500 (835)
T ss_pred -----------hhcCCCchh-----hhhhcCCC--------------cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHH
Confidence 011222221 01111110 000012257889999999999999999999999
Q ss_pred HHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHH
Q 003918 447 DKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEE 526 (786)
Q Consensus 447 ~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (786)
++++.+.--+| ++...||.++..+.-++++.++|++.+.+.+- +.-..+|..|.....
T Consensus 501 driidLriaTP----qii~NyAmfLEeh~yfeesFk~YErgI~LFk~------------------p~v~diW~tYLtkfi 558 (835)
T KOG2047|consen 501 DRIIDLRIATP----QIIINYAMFLEEHKYFEESFKAYERGISLFKW------------------PNVYDIWNTYLTKFI 558 (835)
T ss_pred HHHHHHhcCCH----HHHHHHHHHHHhhHHHHHHHHHHHcCCccCCC------------------ccHHHHHHHHHHHHH
Confidence 99999887777 99999999999999999999999999998761 034588998876544
Q ss_pred -HcC--ChHHHHHHHHHHHhhccCC--HHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCC
Q 003918 527 -SLG--NLESTRAVYERILDLRIAT--PQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGK 601 (786)
Q Consensus 527 -~~g--~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~ 601 (786)
+.| ..+.|+.+|+++++.+|.. ..+++.|+.+..+.|.-..|+++|++|....+..+-...|..|+....+-+|
T Consensus 559 ~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yG- 637 (835)
T KOG2047|consen 559 KRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYG- 637 (835)
T ss_pred HHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhC-
Confidence 333 7899999999999988743 2478899999999999999999999999875333456788888877766554
Q ss_pred CChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHH
Q 003918 602 TKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTRE 681 (786)
Q Consensus 602 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~ 681 (786)
...-|.+|++||+..|++......+.++.++.+.|..++|+.+|..+-+.+|+.....+|..|-.++.++|+-+..++
T Consensus 638 --v~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~ke 715 (835)
T KOG2047|consen 638 --VPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKE 715 (835)
T ss_pred --CcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHH
Confidence 677999999999999997667788899999999999999999999999999998899999999999999999655555
Q ss_pred HH
Q 003918 682 IY 683 (786)
Q Consensus 682 ~~ 683 (786)
.+
T Consensus 716 ML 717 (835)
T KOG2047|consen 716 ML 717 (835)
T ss_pred HH
Confidence 43
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=4e-32 Score=327.16 Aligned_cols=543 Identities=14% Similarity=0.126 Sum_probs=374.8
Q ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhCCCCcchhhHH----------------HHH
Q 003918 82 PEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWE----------------IYL 145 (786)
Q Consensus 82 ~~~~~A~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~w~----------------~~~ 145 (786)
++.+.|+..+++++.++|++|.++...+.+....|+.+.|...++++++.+|.+ ...+. ..+
T Consensus 42 ~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~--~~~~~~~~~~~~~~~~~~~~l~~A 119 (1157)
T PRK11447 42 HREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDS--NAYRSSRTTMLLSTPEGRQALQQA 119 (1157)
T ss_pred CChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCC--hHHHHHHHHHHhcCCchhhHHHHH
Confidence 788999999999999999999999999999999999999999999999999975 34332 222
Q ss_pred HHHHhcCCChHHHHHHHHHHHccCCCCHHH---HHH-HHHhcCCHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHH
Q 003918 146 RFVEQEGIPIETSLRVYRRYLKYDPSHIED---FIE-FLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLL 221 (786)
Q Consensus 146 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~---~~~-~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 221 (786)
..+...|++ ++|++.|+++++.+|.+... +.. .....|++++|++.|
T Consensus 120 ~ll~~~g~~-~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L---------------------------- 170 (1157)
T PRK11447 120 RLLATTGRT-EEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQL---------------------------- 170 (1157)
T ss_pred HHHHhCCCH-HHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHH----------------------------
Confidence 334445555 56666666665555554321 111 111224444444444
Q ss_pred hcccccccCCcHHHHHHhhhhccCchhHHHHHHHHHHHHhhccHHHHHHHHHHHhhccCchhcHHHHHHHHHHHHHHHHH
Q 003918 222 TTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVS 301 (786)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 301 (786)
++.++.+|++ +.++..+|.++...|++++|+..|++++...+.......+|......
T Consensus 171 ----------------~~ll~~~P~~-~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~------ 227 (1157)
T PRK11447 171 ----------------QRLNADYPGN-TGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKD------ 227 (1157)
T ss_pred ----------------HHHHHhCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhc------
Confidence 4444556665 77899999999999999999999999986543222212222211100
Q ss_pred HHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhHhcccccCccchHHHHHHHHHhhhhhchhhhhhhhhhcC
Q 003918 302 AKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQN 381 (786)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 381 (786)
..... .+...+.... ..+++......+...+.+. .....+
T Consensus 228 -----~~~~~----------------------~~~~~l~~~l---~~~p~~~~~~~A~~~L~~~----------~~~~~d 267 (1157)
T PRK11447 228 -----MPVSD----------------------ASVAALQKYL---QVFSDGDSVAAARSQLAEQ----------QKQLAD 267 (1157)
T ss_pred -----cCCCh----------------------hhHHHHHHHH---HHCCCchHHHHHHHHHHHH----------HHhccC
Confidence 00000 0000000000 0000111111111111110 001123
Q ss_pred CCCHHHHHHHHHhhcCCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhH-
Q 003918 382 PHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHL- 460 (786)
Q Consensus 382 p~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~- 460 (786)
|...........+..|++++|+..|++++. .+| .++.++..+|.++...|++++|+..|+++++.+|++....
T Consensus 268 p~~~~~~~G~~~~~~g~~~~A~~~l~~aL~-~~P-----~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~ 341 (1157)
T PRK11447 268 PAFRARAQGLAAVDSGQGGKAIPELQQAVR-ANP-----KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDK 341 (1157)
T ss_pred cchHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhH
Confidence 433222223333345999999999999995 666 6789999999999999999999999999999999765210
Q ss_pred -------HHHH--HHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCCh
Q 003918 461 -------ASIW--CEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNL 531 (786)
Q Consensus 461 -------~~~~--~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 531 (786)
...| ...+..+...|++++|+..|++++...| ++..++..++.++...|++
T Consensus 342 ~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P--------------------~~~~a~~~Lg~~~~~~g~~ 401 (1157)
T PRK11447 342 WESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN--------------------TDSYAVLGLGDVAMARKDY 401 (1157)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--------------------CCHHHHHHHHHHHHHCCCH
Confidence 0112 2346677889999999999999999999 7788899999999999999
Q ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHH------------------------------------------HHcccHHHHH
Q 003918 532 ESTRAVYERILDLRIATPQIIINYALLL------------------------------------------EEHKYFEDAF 569 (786)
Q Consensus 532 ~~A~~~~~~al~~~p~~~~~~~~~~~~~------------------------------------------~~~g~~~~A~ 569 (786)
++|+..|+++++.+|+++.++..++.++ ...|++++|+
T Consensus 402 ~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~ 481 (1157)
T PRK11447 402 AAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAA 481 (1157)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999988776665543 3467788888
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003918 570 RVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQ 649 (786)
Q Consensus 570 ~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 649 (786)
+.|+++++. +|+++.++..++..+. ..|++++|+..|+++++..|+ +...+..++.++...|+.++|+..+++
T Consensus 482 ~~~~~Al~~--~P~~~~~~~~LA~~~~---~~G~~~~A~~~l~~al~~~P~--~~~~~~a~al~l~~~~~~~~Al~~l~~ 554 (1157)
T PRK11447 482 ELQRQRLAL--DPGSVWLTYRLAQDLR---QAGQRSQADALMRRLAQQKPN--DPEQVYAYGLYLSGSDRDRAALAHLNT 554 (1157)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 888888886 6777777766554443 347788888888888888777 455666666555555666555555443
Q ss_pred H----------------------------------------HhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHHh
Q 003918 650 A----------------------------------------TKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIES 689 (786)
Q Consensus 650 ~----------------------------------------l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 689 (786)
+ ++..|.++.... .+...+.+.|++++|+..|++++..
T Consensus 555 l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~--~La~~~~~~g~~~~A~~~y~~al~~ 632 (1157)
T PRK11447 555 LPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDL--TLADWAQQRGDYAAARAAYQRVLTR 632 (1157)
T ss_pred CCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHH--HHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2 223455443333 3334456789999999999999999
Q ss_pred cCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003918 690 GLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRI 758 (786)
Q Consensus 690 ~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~G~~~~a~~~~~~ 758 (786)
.|+ .+.+++.++.++...|++++|.++|+++++. .|+ +...+..++..+...|+.++|.++++.
T Consensus 633 -~P~--~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~-~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~ 696 (1157)
T PRK11447 633 -EPG--NADARLGLIEVDIAQGDLAAARAQLAKLPAT-AND-SLNTQRRVALAWAALGDTAAAQRTFNR 696 (1157)
T ss_pred -CCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-CCC-ChHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 888 4668999999999999999999999999986 677 578888889999999999999999853
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=2e-34 Score=290.96 Aligned_cols=434 Identities=17% Similarity=0.160 Sum_probs=338.6
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHhcCCChHHHHHHHHHHHccCCCCHHH---HHHHHH
Q 003918 105 WIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIED---FIEFLV 181 (786)
Q Consensus 105 w~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~w~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~---~~~~~~ 181 (786)
...++.-..+.|++..|.+.....-+.+|.+. +. -.....+..+..+. +...+.-..+++.+|-..+. +..++.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~-~~-llll~ai~~q~~r~-d~s~a~~~~a~r~~~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNT-ER-LLLLSAIFFQGSRL-DKSSAGSLLAIRKNPQGAEAYSNLANILK 127 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcc-cc-eeeehhhhhcccch-hhhhhhhhhhhhccchHHHHHHHHHHHHH
Confidence 45666666667777777777777777777652 11 12223333344455 66666556666666655443 335666
Q ss_pred hcCCHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHhcccccccCCcHHHHHHhhhhccCchhHHHHHHHHHHHHh
Q 003918 182 KSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIR 261 (786)
Q Consensus 182 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~y~~ 261 (786)
..|++++|+..|+.+++. -|. +.+.|..+|..+..
T Consensus 128 erg~~~~al~~y~~aiel--------------------------------------------~p~-fida~inla~al~~ 162 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIEL--------------------------------------------KPK-FIDAYINLAAALVT 162 (966)
T ss_pred HhchHHHHHHHHHHHHhc--------------------------------------------Cch-hhHHHhhHHHHHHh
Confidence 667777777766666532 111 25678888888888
Q ss_pred hccHHHHHHHHHHHhhccCchhcHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHH
Q 003918 262 RELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVK 341 (786)
Q Consensus 262 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (786)
.|+.+.|...|..++..+|...
T Consensus 163 ~~~~~~a~~~~~~alqlnP~l~---------------------------------------------------------- 184 (966)
T KOG4626|consen 163 QGDLELAVQCFFEALQLNPDLY---------------------------------------------------------- 184 (966)
T ss_pred cCCCcccHHHHHHHHhcCcchh----------------------------------------------------------
Confidence 8999999999988887766431
Q ss_pred hHhcccccCccchHHHHHHHHHhhhhhchhhhhhhhhhcCCCCHHHHHHHHHhh--cCCchhHHHHHHHHHhccCCCccC
Q 003918 342 KVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAV 419 (786)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~--~~~~~~a~~~~~~al~~~~~~~~~ 419 (786)
.+....+.++ +|...+|...|.+++. .+|
T Consensus 185 --------------------------------------------ca~s~lgnLlka~Grl~ea~~cYlkAi~-~qp---- 215 (966)
T KOG4626|consen 185 --------------------------------------------CARSDLGNLLKAEGRLEEAKACYLKAIE-TQP---- 215 (966)
T ss_pred --------------------------------------------hhhcchhHHHHhhcccchhHHHHHHHHh-hCC----
Confidence 1111112222 2677888999999995 555
Q ss_pred CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhh
Q 003918 420 GKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRV 499 (786)
Q Consensus 420 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 499 (786)
....+|..+|..+..+|+...|+..|+++++++|+.. ++|+.++..+...+.+++|+..|.+++...|
T Consensus 216 -~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~----dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp------- 283 (966)
T KOG4626|consen 216 -CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFL----DAYINLGNVYKEARIFDRAVSCYLRALNLRP------- 283 (966)
T ss_pred -ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcch----HHHhhHHHHHHHHhcchHHHHHHHHHHhcCC-------
Confidence 5778899999999999999999999999999999887 8999999999999999999999999999988
Q ss_pred hccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhc
Q 003918 500 AADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIF 579 (786)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 579 (786)
+...++-.++.+|..+|..+-|+..|+++++..|+.++++.+++..+-..|+..+|..+|.+++..
T Consensus 284 -------------n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l- 349 (966)
T KOG4626|consen 284 -------------NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL- 349 (966)
T ss_pred -------------cchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh-
Confidence 677788888888889999999999999999999999999999999999999999999999999998
Q ss_pred CCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Q 003918 580 KYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEK 659 (786)
Q Consensus 580 ~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 659 (786)
+|.+.+...+++.... ..|.++.|..+|+++++..|. ......++|.++.++|++++|+..|+.++++.|.-.+
T Consensus 350 -~p~hadam~NLgni~~---E~~~~e~A~~ly~~al~v~p~--~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAd 423 (966)
T KOG4626|consen 350 -CPNHADAMNNLGNIYR---EQGKIEEATRLYLKALEVFPE--FAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFAD 423 (966)
T ss_pred -CCccHHHHHHHHHHHH---HhccchHHHHHHHHHHhhChh--hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHH
Confidence 6888888888665554 347899999999999999998 7788899999999999999999999999999987443
Q ss_pred hhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCC
Q 003918 660 LGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRS 731 (786)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~~ 731 (786)
.. .....-+..+|+.+.|...|.+||.. +|. ..++..++|.++...|++..|+..|+.|++. .||.
T Consensus 424 a~--~NmGnt~ke~g~v~~A~q~y~rAI~~-nPt--~AeAhsNLasi~kDsGni~~AI~sY~~aLkl-kPDf 489 (966)
T KOG4626|consen 424 AL--SNMGNTYKEMGDVSAAIQCYTRAIQI-NPT--FAEAHSNLASIYKDSGNIPEAIQSYRTALKL-KPDF 489 (966)
T ss_pred HH--HhcchHHHHhhhHHHHHHHHHHHHhc-CcH--HHHHHhhHHHHhhccCCcHHHHHHHHHHHcc-CCCC
Confidence 33 33333345688999999999999999 887 7788999999999999999999999999997 7884
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=4.3e-34 Score=288.49 Aligned_cols=434 Identities=15% Similarity=0.193 Sum_probs=263.2
Q ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHhcCCChHHHHHH
Q 003918 82 PEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRV 161 (786)
Q Consensus 82 ~~~~~A~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~w~~~~~~~~~~~~~~~~A~~~ 161 (786)
|+|.+|++....+-..+|.+.+....+........++++...--..+++.+|. ..+.+..++.++...|+. +.|+..
T Consensus 62 gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q--~ae~ysn~aN~~kerg~~-~~al~~ 138 (966)
T KOG4626|consen 62 GDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQ--GAEAYSNLANILKERGQL-QDALAL 138 (966)
T ss_pred cCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccch--HHHHHHHHHHHHHHhchH-HHHHHH
Confidence 78888888888888888887777666666666666677666666677787884 467777788888888888 888888
Q ss_pred HHHHHccCCCCHHHHH---HHHHhcCCHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHhcccccccCCcHHHHHH
Q 003918 162 YRRYLKYDPSHIEDFI---EFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIR 238 (786)
Q Consensus 162 ~~~~l~~~p~~~~~~~---~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (786)
|+.++++.|++.++++ ..+...|+.+.|.++|.+++..
T Consensus 139 y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--------------------------------------- 179 (966)
T KOG4626|consen 139 YRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--------------------------------------- 179 (966)
T ss_pred HHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc---------------------------------------
Confidence 8888888888887777 4455677777777777766632
Q ss_pred hhhhccCchhHHHHHHHHHHHHhhccHHHHHHHHHHHhhccCchhcHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccc
Q 003918 239 GGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDE 318 (786)
Q Consensus 239 ~~~~~~p~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (786)
.|.. .-....+|.+.-..|+.++|...|.++++..|.- +.
T Consensus 180 -----nP~l-~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~f---Ai------------------------------- 219 (966)
T KOG4626|consen 180 -----NPDL-YCARSDLGNLLKAEGRLEEAKACYLKAIETQPCF---AI------------------------------- 219 (966)
T ss_pred -----Ccch-hhhhcchhHHHHhhcccchhHHHHHHHHhhCCce---ee-------------------------------
Confidence 1211 2234455666777889999999999998776632 11
Q ss_pred ccCCcchhhhHhhhhhhHHHHHHhHhcccccCccchHHHHHHHHHhhhhhchhhhhhhhhhcCCCCHHHHHHHHHhhc--
Q 003918 319 EHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE-- 396 (786)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~-- 396 (786)
+|..++..+.
T Consensus 220 --------------------------------------------------------------------awsnLg~~f~~~ 231 (966)
T KOG4626|consen 220 --------------------------------------------------------------------AWSNLGCVFNAQ 231 (966)
T ss_pred --------------------------------------------------------------------eehhcchHHhhc
Confidence 2222233222
Q ss_pred CCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccC
Q 003918 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKN 476 (786)
Q Consensus 397 ~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~ 476 (786)
|+.-.|+..|++++ +++| ..+++|+.+|..|...+.+++|...|.+++...|++. .++..++.++..+|.
T Consensus 232 Gei~~aiq~y~eAv-kldP-----~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A----~a~gNla~iYyeqG~ 301 (966)
T KOG4626|consen 232 GEIWLAIQHYEEAV-KLDP-----NFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHA----VAHGNLACIYYEQGL 301 (966)
T ss_pred chHHHHHHHHHHhh-cCCC-----cchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcch----hhccceEEEEecccc
Confidence 44445555555555 3555 4555555555555555555666666666555555554 555555555555555
Q ss_pred HHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHH
Q 003918 477 FKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYA 556 (786)
Q Consensus 477 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 556 (786)
.+-|++.|+|++++.| +-+.++..++..+...|++.+|..+|.+++..+|+++++..++|
T Consensus 302 ldlAI~~Ykral~~~P--------------------~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLg 361 (966)
T KOG4626|consen 302 LDLAIDTYKRALELQP--------------------NFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLG 361 (966)
T ss_pred HHHHHHHHHHHHhcCC--------------------CchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHH
Confidence 5666666666655555 44555555555555555555666666666655555555555666
Q ss_pred HHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHH
Q 003918 557 LLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEED 636 (786)
Q Consensus 557 ~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~ 636 (786)
.++.+.|.++.|..+|.++++. .|....+..+++..+. .+|++++|+..|+.++...|. -...+.++|..+..
T Consensus 362 ni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~k---qqgnl~~Ai~~YkealrI~P~--fAda~~NmGnt~ke 434 (966)
T KOG4626|consen 362 NIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYK---QQGNLDDAIMCYKEALRIKPT--FADALSNMGNTYKE 434 (966)
T ss_pred HHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHH---hcccHHHHHHHHHHHHhcCch--HHHHHHhcchHHHH
Confidence 6655555556666666655554 3555555555433222 235555566666666555555 44555555555555
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Q 003918 637 YGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELE 707 (786)
Q Consensus 637 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~ 707 (786)
.|+.+.|++.|.++++.+|.-.+.. ..+...+...|++.+|+.-|+.+++. .|+ +++++.+++..+
T Consensus 435 ~g~v~~A~q~y~rAI~~nPt~AeAh--sNLasi~kDsGni~~AI~sY~~aLkl-kPD--fpdA~cNllh~l 500 (966)
T KOG4626|consen 435 MGDVSAAIQCYTRAIQINPTFAEAH--SNLASIYKDSGNIPEAIQSYRTALKL-KPD--FPDAYCNLLHCL 500 (966)
T ss_pred hhhHHHHHHHHHHHHhcCcHHHHHH--hhHHHHhhccCCcHHHHHHHHHHHcc-CCC--CchhhhHHHHHH
Confidence 5556666666666655555432222 22222233455555566666666555 555 444555554443
No 13
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.9e-31 Score=280.39 Aligned_cols=622 Identities=15% Similarity=0.125 Sum_probs=466.2
Q ss_pred hhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcHHHH
Q 003918 42 FKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKA 121 (786)
Q Consensus 42 ~~~~~~~~~~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~~~A 121 (786)
+..+...|+.|-+.+-.+...|..-..++.... .-.++.|-..|..+++..|+|+...++-|.+.+..++|-.|
T Consensus 110 ~~~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~------~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~a 183 (1018)
T KOG2002|consen 110 FDKATLLFDLADKIDMYEDSHLLVQRGFLLLEG------DKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGA 183 (1018)
T ss_pred HHHHHHHhhHHHHhhccCcchhhhhhhhhhhcC------CccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHH
Confidence 467788889998888888888877777766441 12368999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCcchhhHHHHHHHHHhcCCChHHHHHHHHHHHccCCCCHHHHHHHHH------hcCCHHHHHHHHHH
Q 003918 122 RRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLV------KSKLWQEAAERLAS 195 (786)
Q Consensus 122 ~~~~~~al~~~p~~~~~~~w~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~------~~g~~~~A~~~~~~ 195 (786)
..+|.+++..+|.. .++.....+.+..+.+.. +.|+..|.++++++|.+..+++.+.. ....+..+...+.+
T Consensus 184 l~yyk~al~inp~~-~aD~rIgig~Cf~kl~~~-~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ 261 (1018)
T KOG2002|consen 184 LKYYKKALRINPAC-KADVRIGIGHCFWKLGMS-EKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQR 261 (1018)
T ss_pred HHHHHHHHhcCccc-CCCccchhhhHHHhccch-hhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence 99999999999975 345545555556678999 99999999999999999887764433 23556777777777
Q ss_pred HhcCCCccccCCCcchHHHHHHHHHHhcccccccCCcHHHHHHhhhhccCc--hhHHHHHHHHHHHHhhccHHHHHHHHH
Q 003918 196 VLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTD--EVGRLWTSLADYYIRRELFEKARDIFE 273 (786)
Q Consensus 196 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~la~~y~~~g~~~~A~~~~~ 273 (786)
+.+. .+.++.+...+.+.+--.++... +..+...++..... -..+.++.+|+.|..+|++++|...|.
T Consensus 262 ay~~-------n~~nP~~l~~LAn~fyfK~dy~~---v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~ 331 (1018)
T KOG2002|consen 262 AYKE-------NNENPVALNHLANHFYFKKDYER---VWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYM 331 (1018)
T ss_pred HHhh-------cCCCcHHHHHHHHHHhhcccHHH---HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 7643 34556677777665544443321 22233333222111 114568999999999999999999999
Q ss_pred HHhhccCchhcHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhHhcccccCccc
Q 003918 274 EGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVK 353 (786)
Q Consensus 274 ~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (786)
+++...++...+..+..+-+.+.+ +
T Consensus 332 ~s~k~~~d~~~l~~~GlgQm~i~~-------------------------------------------------------~ 356 (1018)
T KOG2002|consen 332 ESLKADNDNFVLPLVGLGQMYIKR-------------------------------------------------------G 356 (1018)
T ss_pred HHHccCCCCccccccchhHHHHHh-------------------------------------------------------c
Confidence 999887765322222111111110 0
Q ss_pred hHHHHHHHHHhhhhhchhhhhhhhhhcCCCCHHHHHHHHHhhcC------CchhHHHHHHHHHhccCCCccCCCcHHHHH
Q 003918 354 DVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEG------NPTKQILTYTEAVRTVDPMKAVGKPHTLWV 427 (786)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~------~~~~a~~~~~~al~~~~~~~~~~~~~~~~~ 427 (786)
++. +..+.++.+++.+|++.+....+|.++.+ ..+.|..+..++++ ..| ....+|+
T Consensus 357 dle------------~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~-~~~-----~d~~a~l 418 (1018)
T KOG2002|consen 357 DLE------------ESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLE-QTP-----VDSEAWL 418 (1018)
T ss_pred hHH------------HHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHh-ccc-----ccHHHHH
Confidence 111 12334445689999999999999999963 35889999999995 344 6789999
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcc---CCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCC
Q 003918 428 AFAKLYETYKDIANARVIFDKAVQVN---YKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGN 504 (786)
Q Consensus 428 ~~a~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 504 (786)
.++.++... ++-.+..+|.+|+..- ...+ ...+....|.++...|++..|...|.+++...... .+.+..
T Consensus 419 ~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~i--p~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~----~n~de~ 491 (1018)
T KOG2002|consen 419 ELAQLLEQT-DPWASLDAYGNALDILESKGKQI--PPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEV----ANKDEG 491 (1018)
T ss_pred HHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCC--CHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhh----cCcccc
Confidence 999988765 4445588888887421 1111 13788999999999999999999999999762100 000000
Q ss_pred hhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCCh
Q 003918 505 EPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHV 584 (786)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~ 584 (786)
. ..+..+-+.++.++...++++.|.+.|..+++..|...+.+..+|.+....++..+|...++.++.. +..+
T Consensus 492 ~------~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~--d~~n 563 (1018)
T KOG2002|consen 492 K------STNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI--DSSN 563 (1018)
T ss_pred c------cchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc--ccCC
Confidence 0 0123346777899999999999999999999999999999999998888899999999999999997 7888
Q ss_pred HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHh
Q 003918 585 KDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEED------------YGLAKRAMKVYDQATK 652 (786)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~------------~g~~~~A~~~~~~~l~ 652 (786)
+.+|..++.... ...++..|..-|+..++......+.-..+.+|.++.+ .+.+++|+.+|.++|+
T Consensus 564 p~arsl~G~~~l---~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~ 640 (1018)
T KOG2002|consen 564 PNARSLLGNLHL---KKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR 640 (1018)
T ss_pred cHHHHHHHHHHH---hhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh
Confidence 999997664444 3356778888777777764333345566777776654 3567899999999999
Q ss_pred cCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCCC
Q 003918 653 AVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSD 732 (786)
Q Consensus 653 ~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~~~ 732 (786)
.+|.| ++...+.+-.....|++..|+.+|.++.+. ..+ ++++|+++|+++..+|++..|.++|+.+++...+.++
T Consensus 641 ~dpkN--~yAANGIgiVLA~kg~~~~A~dIFsqVrEa-~~~--~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~ 715 (1018)
T KOG2002|consen 641 NDPKN--MYAANGIGIVLAEKGRFSEARDIFSQVREA-TSD--FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNR 715 (1018)
T ss_pred cCcch--hhhccchhhhhhhccCchHHHHHHHHHHHH-Hhh--CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 99984 555555555556789999999999999987 333 4679999999999999999999999999998777778
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhhhhHHHHHhhh
Q 003918 733 TEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASYSQVIYFSFLLL 777 (786)
Q Consensus 733 ~~~~~~~~~~~~~~G~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 777 (786)
..+..+++..+.+.|.+.+|++.+...+.+...-.-+.|..+.+.
T Consensus 716 ~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~ 760 (1018)
T KOG2002|consen 716 SEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVL 760 (1018)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHH
Confidence 999999999999999999999999777777666666666555443
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.3e-30 Score=271.68 Aligned_cols=572 Identities=15% Similarity=0.120 Sum_probs=430.4
Q ss_pred CCcchHhHHHHhhCCCChHhHHHHHHHH-HcCChhhHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhccCCCCCchhHH
Q 003918 10 SEDDLLYEEELLRNPFSLKLWWRYLVAK-REAPFKKRFVIYERALKALPG---SYKLWHAYLIERLSIVKNLPITHPEYE 85 (786)
Q Consensus 10 ~~~~~~~~~~l~~~p~~~~~w~~~~~~~-~~~~~~~~~~~~~~al~~~P~---~~~~w~~~~~~~~~~~~~~~~~~~~~~ 85 (786)
...+..|..++.++|.|+.+.++.+... .+++|..+...|.++|..+|. |+.+=..++-+-+ +..+
T Consensus 147 ~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl----------~~~~ 216 (1018)
T KOG2002|consen 147 DDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKL----------GMSE 216 (1018)
T ss_pred HHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhc----------cchh
Confidence 4567788899999999999999987764 578999999999999999887 3333333333222 6778
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHcCC---cHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHhcCCChHHHHHHH
Q 003918 86 TLNNTFERALVTMHKMPRIWIMYLETLTSQK---FITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVY 162 (786)
Q Consensus 86 ~A~~~~~~al~~~p~~~~~w~~~~~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~w~~~~~~~~~~~~~~~~A~~~~ 162 (786)
.|...|+||++++|.++.+.+.++.+..... .+..+..++.++...+|.+ +.+-..++..+...+++ ..+..+.
T Consensus 217 ~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~n--P~~l~~LAn~fyfK~dy-~~v~~la 293 (1018)
T KOG2002|consen 217 KALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNEN--PVALNHLANHFYFKKDY-ERVWHLA 293 (1018)
T ss_pred hHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCC--cHHHHHHHHHHhhcccH-HHHHHHH
Confidence 8999999999999999999998888877654 4778999999999999875 77777778877788999 9999998
Q ss_pred HHHHccCCCCH---HHHH---HHHHhcCCHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHhcccccccCCcHHHH
Q 003918 163 RRYLKYDPSHI---EDFI---EFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAI 236 (786)
Q Consensus 163 ~~~l~~~p~~~---~~~~---~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (786)
.-++...-... +.+. ..+..+|++++|..+|.+++..+
T Consensus 294 ~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~------------------------------------ 337 (1018)
T KOG2002|consen 294 EHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD------------------------------------ 337 (1018)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC------------------------------------
Confidence 88887542222 3333 66778899999999988887421
Q ss_pred HHhhhhccCchhHHHHHHHHHHHHhhccHHHHHHHHHHHhhccCchhcH-HHHHHHHHHHHHHHHHHHhcCCCCCCcccc
Q 003918 237 IRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDF-SVIFDSYSQFEEIMVSAKMAKPDLSVEEEE 315 (786)
Q Consensus 237 ~~~~~~~~p~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (786)
|++..-..+.+|++|...|+++.|..+|++.++..|+.... ..+...|.....
T Consensus 338 --------~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~------------------ 391 (1018)
T KOG2002|consen 338 --------NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAK------------------ 391 (1018)
T ss_pred --------CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhh------------------
Confidence 11112246788999999999999999999999999986532 223333322210
Q ss_pred cccccCCcchhhhHhhhhhhHHHHHHhHhcccccCccchHHHHHHHHHhhhhhchhhhhhhhhhcCCCCHHHHHHHHHhh
Q 003918 316 DDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIF 395 (786)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~ 395 (786)
...........+. ..++..|.+.++|+.+++++
T Consensus 392 -----------------------------------~~~~~d~a~~~l~------------K~~~~~~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 392 -----------------------------------KQEKRDKASNVLG------------KVLEQTPVDSEAWLELAQLL 424 (1018)
T ss_pred -----------------------------------hhHHHHHHHHHHH------------HHHhcccccHHHHHHHHHHH
Confidence 0000011111222 23677899999999999999
Q ss_pred c-CCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhc-----cCCCh-hhHHHHHHHHH
Q 003918 396 E-GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQV-----NYKTV-DHLASIWCEWA 468 (786)
Q Consensus 396 ~-~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~-~~~~~~~~~~a 468 (786)
+ +++-.+..+|..|+..+-.... .-.+.....+|..+...|++..|...|.+++.. +++.. .....+-+.++
T Consensus 425 e~~d~~~sL~~~~~A~d~L~~~~~-~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla 503 (1018)
T KOG2002|consen 425 EQTDPWASLDAYGNALDILESKGK-QIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA 503 (1018)
T ss_pred HhcChHHHHHHHHHHHHHHHHcCC-CCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence 8 7877778888888843211001 124678899999999999999999999999876 22220 00113467789
Q ss_pred HHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCC
Q 003918 469 EMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIAT 548 (786)
Q Consensus 469 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 548 (786)
.++...++++.|.+.|..++...| .....+..++.+....+...+|...+..++..+..+
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilkehp--------------------~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~n 563 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKEHP--------------------GYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSN 563 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHCc--------------------hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCC
Confidence 999999999999999999999999 677888888877777889999999999999999999
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHh---------CCCChHHHHHHHHHHHhhCC
Q 003918 549 PQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRY---------GKTKLERARELFENAVETAP 619 (786)
Q Consensus 549 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~---------~~~~~~~A~~~~~~al~~~p 619 (786)
|.+|..+|.++.....+.-|.+-|+.+++....-.+....+.++..+...+ ..+.+++|.++|.+++..+|
T Consensus 564 p~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dp 643 (1018)
T KOG2002|consen 564 PNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDP 643 (1018)
T ss_pred cHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCc
Confidence 999999999999999999999988888875211223333444444333322 12357889999999999999
Q ss_pred ccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChhHHHH
Q 003918 620 ADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAM 699 (786)
Q Consensus 620 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~ 699 (786)
. +.-.-..+|-++...|++.+|+.+|.++...-.+..++++..+.+. ...|+|..|++.|+.+++. .-.+..+.+
T Consensus 644 k--N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~--~e~~qy~~AIqmYe~~lkk-f~~~~~~~v 718 (1018)
T KOG2002|consen 644 K--NMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCY--VEQGQYRLAIQMYENCLKK-FYKKNRSEV 718 (1018)
T ss_pred c--hhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHH--HHHHHHHHHHHHHHHHHHH-hcccCCHHH
Confidence 8 4445556888888899999999999988776555555665555554 4678999999999999998 444446789
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHccCCCC
Q 003918 700 CLKYAELEKSLGEIDRARGIYVFASQFADPR 730 (786)
Q Consensus 700 ~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~ 730 (786)
...+|.++...|.+.+|..+.-+|+.. .|.
T Consensus 719 l~~Lara~y~~~~~~eak~~ll~a~~~-~p~ 748 (1018)
T KOG2002|consen 719 LHYLARAWYEAGKLQEAKEALLKARHL-APS 748 (1018)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHh-CCc
Confidence 999999999999999999999999987 565
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=6.3e-28 Score=276.93 Aligned_cols=613 Identities=10% Similarity=-0.002 Sum_probs=391.2
Q ss_pred cCChhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcH
Q 003918 39 EAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFI 118 (786)
Q Consensus 39 ~~~~~~~~~~~~~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~ 118 (786)
.+++++|+..|++|++.+|+++.+...++.+.+.. |++++|+..++++++.+|.|...+..++.+ +++
T Consensus 57 ~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~--------g~~~~A~~~~~kAv~ldP~n~~~~~~La~i----~~~ 124 (987)
T PRK09782 57 NNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHF--------GHDDRARLLLEDQLKRHPGDARLERSLAAI----PVE 124 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHhcCcccHHHHHHHHHh----ccC
Confidence 69999999999999999999999999999998876 999999999999999999998888777555 888
Q ss_pred HHHHHHHHHHHhhCCCCcchhhHHHHHHHH-----HhcCCChHHHHHHHH-HHHccCCCCH--HHH-HHHHHhcCCHHHH
Q 003918 119 TKARRTFDRALCALPVTQHDRIWEIYLRFV-----EQEGIPIETSLRVYR-RYLKYDPSHI--EDF-IEFLVKSKLWQEA 189 (786)
Q Consensus 119 ~~A~~~~~~al~~~p~~~~~~~w~~~~~~~-----~~~~~~~~~A~~~~~-~~l~~~p~~~--~~~-~~~~~~~g~~~~A 189 (786)
.+|..+|++++..+|.+ .+.....+..+ ....+. ++|.+.++ +.+..+|++. ... ..++...|+|++|
T Consensus 125 ~kA~~~ye~l~~~~P~n--~~~~~~la~~~~~~~~l~y~q~-eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~A 201 (987)
T PRK09782 125 VKSVTTVEELLAQQKAC--DAVPTLRCRSEVGQNALRLAQL-PVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQA 201 (987)
T ss_pred hhHHHHHHHHHHhCCCC--hhHHHHHHHHhhccchhhhhhH-HHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHH
Confidence 89999999999999987 44444444430 112233 44444444 3333333333 222 4788899999999
Q ss_pred HHHHHHHhcCCCccccCCCcchHHHHHHHHHHhcc-cccccCCcHHHHHHhhhhccCchhHHHHHHHHHHHHhhccHHHH
Q 003918 190 AERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTH-ATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKA 268 (786)
Q Consensus 190 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~y~~~g~~~~A 268 (786)
++.+.++++. ++.+...+..+..++... .+ ..+..+++..++ . .+.++..++..|.+.|+.++|
T Consensus 202 i~lL~~L~k~-------~pl~~~~~~~L~~ay~q~l~~----~~a~al~~~~lk---~-d~~l~~ala~~yi~~G~~~~A 266 (987)
T PRK09782 202 DTLYNEARQQ-------NTLSAAERRQWFDVLLAGQLD----DRLLALQSQGIF---T-DPQSRITYATALAYRGEKARL 266 (987)
T ss_pred HHHHHHHHhc-------CCCCHHHHHHHHHHHHHhhCH----HHHHHHhchhcc---c-CHHHHHHHHHHHHHCCCHHHH
Confidence 9999999964 345556676776665542 22 233334333222 3 378999999999999999999
Q ss_pred HHHHHHHhhccCchh-cHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhHhccc
Q 003918 269 RDIFEEGMMTVVTVR-DFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGF 347 (786)
Q Consensus 269 ~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (786)
...+++.-...+..+ +...+|..- .. +.... .+...|....
T Consensus 267 ~~~L~~~~~~~~~~~~~~~~~~~l~-r~------------~~~~~---------------------~~~~~~~~~~---- 308 (987)
T PRK09782 267 QHYLIENKPLFTTDAQEKSWLYLLS-KY------------SANPV---------------------QALANYTVQF---- 308 (987)
T ss_pred HHHHHhCcccccCCCccHHHHHHHH-hc------------cCchh---------------------hhccchhhhh----
Confidence 999988544433322 112233211 00 00000 0000000000
Q ss_pred ccCccchHHHHHHH---HHhhhhhchhhhhhhhhhcCCCCHHHHHHHHHhhc-CCchhHHHHHHHHHhccCCCccCCCcH
Q 003918 348 WLHDVKDVDLRLAR---LEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE-GNPTKQILTYTEAVRTVDPMKAVGKPH 423 (786)
Q Consensus 348 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~-~~~~~a~~~~~~al~~~~~~~~~~~~~ 423 (786)
.-..+... .+...+.+.-.+...++...|.+...-..+..... +...++........+. .| ...
T Consensus 309 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~-~~-----~~~ 376 (987)
T PRK09782 309 ------ADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQ-EP-----ANL 376 (987)
T ss_pred ------HHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhc-CC-----CCH
Confidence 00000011 11122222222333445566666643333333323 5566666666665543 23 466
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccC---HHHHHH------------------
Q 003918 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKN---FKGALE------------------ 482 (786)
Q Consensus 424 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~---~~~A~~------------------ 482 (786)
......+-...+.|+.++|...|++++...++.. ....+-..++.++.+++. ..++..
T Consensus 377 ~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 455 (987)
T PRK09782 377 TRLDQLTWQLMQNGQSREAADLLLQRYPFQGDAR-LSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLP 455 (987)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccc-cCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhh
Confidence 7777777778888999999999999887533221 111344467777766655 222222
Q ss_pred -------HHHHHhcCCchHHhhhhhccCChhHHHHhhh--cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHH
Q 003918 483 -------LMRRATAEPSVEVRRRVAADGNEPVQMKLHK--SLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIII 553 (786)
Q Consensus 483 -------~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 553 (786)
.+.+++...| . .+.+|..++.++.. ++..+|+..|.+++...|++. ...
T Consensus 456 ~~~~~~~~~~~al~~~p--------------------~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L 513 (987)
T PRK09782 456 GIADNCPAIVRLLGDMS--------------------PSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHR 513 (987)
T ss_pred hhhhhHHHHHHhcccCC--------------------CCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHH
Confidence 2222222222 3 66777888877765 777778888888888777653 244
Q ss_pred HHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHH
Q 003918 554 NYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKL 633 (786)
Q Consensus 554 ~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~ 633 (786)
.++..+...|++++|+..|++++.. |.....|...+..+. ..|++++|...|+++++..|+ ....+..++..
T Consensus 514 ~lA~al~~~Gr~eeAi~~~rka~~~---~p~~~a~~~la~all---~~Gd~~eA~~~l~qAL~l~P~--~~~l~~~La~~ 585 (987)
T PRK09782 514 AVAYQAYQVEDYATALAAWQKISLH---DMSNEDLLAAANTAQ---AAGNGAARDRWLQQAEQRGLG--DNALYWWLHAQ 585 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhcc---CCCcHHHHHHHHHHH---HCCCHHHHHHHHHHHHhcCCc--cHHHHHHHHHH
Confidence 5566667788888888888887664 333344554443333 347788888888888887776 34444444444
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCCh
Q 003918 634 EEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEI 713 (786)
Q Consensus 634 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~ 713 (786)
....|++++|...|+++++..|+ +. .+......+.+.|++++|+..|++++.. .|+ .+.++..+|.++...|++
T Consensus 586 l~~~Gr~~eAl~~~~~AL~l~P~-~~--a~~~LA~~l~~lG~~deA~~~l~~AL~l-~Pd--~~~a~~nLG~aL~~~G~~ 659 (987)
T PRK09782 586 RYIPGQPELALNDLTRSLNIAPS-AN--AYVARATIYRQRHNVPAAVSDLRAALEL-EPN--NSNYQAALGYALWDSGDI 659 (987)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCC-HH--HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCC--CHHHHHHHHHHHHHCCCH
Confidence 44568888888888888888774 33 3334444455778888888888888888 777 455777888888888888
Q ss_pred HHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhhhhH
Q 003918 714 DRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASYSQVI 770 (786)
Q Consensus 714 ~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~G~~~~a~~~~~~~~~~~~~~~~~~ 770 (786)
++|+.+|+++++. +|+ ++..|..++..+...|+.++|+..++..-.+....-.+.
T Consensus 660 eeAi~~l~~AL~l-~P~-~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~ 714 (987)
T PRK09782 660 AQSREMLERAHKG-LPD-DPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALIT 714 (987)
T ss_pred HHHHHHHHHHHHh-CCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhh
Confidence 8888888888876 677 577888888888888888888887754444443333333
No 16
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=3.9e-27 Score=270.47 Aligned_cols=623 Identities=12% Similarity=0.019 Sum_probs=420.8
Q ss_pred CcchHhHHHHhhCCCChHhHHHHHHH-HHcCChhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccCCCCCchhHHHHHH
Q 003918 11 EDDLLYEEELLRNPFSLKLWWRYLVA-KREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNN 89 (786)
Q Consensus 11 ~~~~~~~~~l~~~p~~~~~w~~~~~~-~~~~~~~~~~~~~~~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~ 89 (786)
+....|+.+++.+|.+...+..++.+ ...+.+++|+...+++++.+|.+..+...++.+ +++++|..
T Consensus 62 ~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i------------~~~~kA~~ 129 (987)
T PRK09782 62 TAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI------------PVEVKSVT 129 (987)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh------------ccChhHHH
Confidence 45667999999999999999888775 468899999999999999999999888876544 57889999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHH-----HcCCcHHHHHHHHH-HHHhhCCCCcchhhHHHHHHHHHhcCCChHHHHHHHH
Q 003918 90 TFERALVTMHKMPRIWIMYLETL-----TSQKFITKARRTFD-RALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYR 163 (786)
Q Consensus 90 ~~~~al~~~p~~~~~w~~~~~~~-----~~~~~~~~A~~~~~-~al~~~p~~~~~~~w~~~~~~~~~~~~~~~~A~~~~~ 163 (786)
+|++.++.+|.+.++...++..+ +...+.+.|...++ +.+..+|. +..+.....+++..++++ ++|+..+.
T Consensus 130 ~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~--~~vL~L~~~rlY~~l~dw-~~Ai~lL~ 206 (987)
T PRK09782 130 TVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPE--GKTLRTDLLQRAIYLKQW-SQADTLYN 206 (987)
T ss_pred HHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCC--cHHHHHHHHHHHHHHhCH-HHHHHHHH
Confidence 99999999999999998888872 11223344444444 33332222 233445558889999999 99999999
Q ss_pred HHHccCCCCHHHH---HHHHHh-cCCHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHhcccccccCCcHHHHHHh
Q 003918 164 RYLKYDPSHIEDF---IEFLVK-SKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRG 239 (786)
Q Consensus 164 ~~l~~~p~~~~~~---~~~~~~-~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (786)
+.++..|.+.... ...+.. .++ +++..+++..+. .+..++..+++.+.+.++... +...+++
T Consensus 207 ~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk----------~d~~l~~ala~~yi~~G~~~~---A~~~L~~ 272 (987)
T PRK09782 207 EARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIF----------TDPQSRITYATALAYRGEKAR---LQHYLIE 272 (987)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcc----------cCHHHHHHHHHHHHHCCCHHH---HHHHHHh
Confidence 9999999987543 355555 466 777777654332 456688888888887776532 3334443
Q ss_pred hh---hccCchhHHHHH-HHHHHHHhhccH-HHHHHHHHHHhhccCchhcHHHHHHHHHHHHHHHHH-HHhcCCCCCCcc
Q 003918 240 GI---RKFTDEVGRLWT-SLADYYIRRELF-EKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVS-AKMAKPDLSVEE 313 (786)
Q Consensus 240 ~~---~~~p~~~~~~~~-~la~~y~~~g~~-~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 313 (786)
.- ...|.+ ..|. .+++ .+.. ..|+..|.+-+.. ++...-...++....... .+.+.+.+..+
T Consensus 273 ~~~~~~~~~~~--~~~~~~l~r----~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 340 (987)
T PRK09782 273 NKPLFTTDAQE--KSWLYLLSK----YSANPVQALANYTVQFAD-----NRQYVVGATLPVLLKEGQYDAAQKLLATLP- 340 (987)
T ss_pred CcccccCCCcc--HHHHHHHHh----ccCchhhhccchhhhhHH-----HHHHHHHHHHHHHHhccHHHHHHHHhcCCC-
Confidence 22 222333 2232 2232 2222 2233333331111 000111000111000000 00001111100
Q ss_pred cccccccCCcchhhhHhhhhhhHHHHHHhHhcccccCccchHHHHHHHHHhhhh-hchhhhhhhhhhcCCCCHHHHHHHH
Q 003918 314 EEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMN-RRPELANSVLLRQNPHNVEQWHRRV 392 (786)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~p~~~~~~~~~~ 392 (786)
.......+......... .+....-..+.+..|.+.......+
T Consensus 341 -------------------------------------~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~ 383 (987)
T PRK09782 341 -------------------------------------ANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLT 383 (987)
T ss_pred -------------------------------------cchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 00001111111000000 0001111223556688887776554
Q ss_pred Hhh--cCCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCC-------------------------hhH---H
Q 003918 393 KIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKD-------------------------IAN---A 442 (786)
Q Consensus 393 ~~~--~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~-------------------------~~~---A 442 (786)
-.. .|+.++|..+|+.+... ++.. -. +..+...++..+...+. +.+ +
T Consensus 384 ~~~~~~~~~~~a~~~~~~~~~~-~~~~-~~-~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (987)
T PRK09782 384 WQLMQNGQSREAADLLLQRYPF-QGDA-RL-SQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADN 460 (987)
T ss_pred HHHHHcccHHHHHHHHHHhcCC-Cccc-cc-CHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhh
Confidence 444 48999999999998842 3211 11 23444577777765543 322 3
Q ss_pred HHHHHHHHhccCC--ChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHH
Q 003918 443 RVIFDKAVQVNYK--TVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTF 520 (786)
Q Consensus 443 ~~~~~~al~~~p~--~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (786)
...+.+++...|. ++ .+|..++.++.. +++++|+..|.+++...| ++. ....
T Consensus 461 ~~~~~~al~~~p~~~~~----~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~P--------------------d~~-~~L~ 514 (987)
T PRK09782 461 CPAIVRLLGDMSPSYDA----AAWNRLAKCYRD-TLPGVALYAWLQAEQRQP--------------------DAW-QHRA 514 (987)
T ss_pred HHHHHHhcccCCCCCCH----HHHHHHHHHHHh-CCcHHHHHHHHHHHHhCC--------------------chH-HHHH
Confidence 3444455555555 54 889999988876 899999999999998888 332 2444
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhC
Q 003918 521 YVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYG 600 (786)
Q Consensus 521 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~ 600 (786)
++..+...|++++|+..|++++...|. +..+..+|.++...|++++|...+++++.. +|.+..++..+..... .
T Consensus 515 lA~al~~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~---~ 588 (987)
T PRK09782 515 VAYQAYQVEDYATALAAWQKISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRY---I 588 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHH---h
Confidence 566667899999999999998776554 456788899999999999999999999987 5777665544322221 4
Q ss_pred CCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHH
Q 003918 601 KTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTR 680 (786)
Q Consensus 601 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~ 680 (786)
.|++++|...|+++++..|+ ...+..+|.++.+.|++++|+..|++++...|+++......+++. ...|++++|+
T Consensus 589 ~Gr~~eAl~~~~~AL~l~P~---~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL--~~~G~~eeAi 663 (987)
T PRK09782 589 PGQPELALNDLTRSLNIAPS---ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYAL--WDSGDIAQSR 663 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--HHCCCHHHHH
Confidence 48899999999999999995 578999999999999999999999999999998776555555444 4789999999
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003918 681 EIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREML 756 (786)
Q Consensus 681 ~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~G~~~~a~~~~ 756 (786)
..|+++++. .|+ ++.++..+|.++...|++++|...|+++++. +|+ .+.+-..++.......++..+.+.+
T Consensus 664 ~~l~~AL~l-~P~--~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l-~P~-~a~i~~~~g~~~~~~~~~~~a~~~~ 734 (987)
T PRK09782 664 EMLERAHKG-LPD--DPALIRQLAYVNQRLDDMAATQHYARLVIDD-IDN-QALITPLTPEQNQQRFNFRRLHEEV 734 (987)
T ss_pred HHHHHHHHh-CCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCC-CchhhhhhhHHHHHHHHHHHHHHHH
Confidence 999999999 898 5679999999999999999999999999997 788 5888888888888888888887776
No 17
>PLN03077 Protein ECB2; Provisional
Probab=99.98 E-value=7.3e-27 Score=275.44 Aligned_cols=608 Identities=13% Similarity=0.090 Sum_probs=421.9
Q ss_pred HhHHHHhhC-CCChHhHHHHHHHHH-cCChhhHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccCCCCCchhHHHHHHHH
Q 003918 15 LYEEELLRN-PFSLKLWWRYLVAKR-EAPFKKRFVIYERALKALPG-SYKLWHAYLIERLSIVKNLPITHPEYETLNNTF 91 (786)
Q Consensus 15 ~~~~~l~~~-p~~~~~w~~~~~~~~-~~~~~~~~~~~~~al~~~P~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 91 (786)
.|+...... |.+...|..++..+. .+....+..++.++++..|. ++.++..++..+.+ .|+.+.|..+|
T Consensus 73 l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~--------~g~~~~A~~~f 144 (857)
T PLN03077 73 LLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVR--------FGELVHAWYVF 144 (857)
T ss_pred HHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHh--------CCChHHHHHHH
Confidence 344444432 334445555554432 44555666666666655543 34444444444333 26667777777
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHhh--CCCC--------------------------------cc
Q 003918 92 ERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCA--LPVT--------------------------------QH 137 (786)
Q Consensus 92 ~~al~~~p~~~~~w~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~--------------------------------~~ 137 (786)
+..- +.++..|..++..+.+.|++++|..+|++.... .|.. .+
T Consensus 145 ~~m~---~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~ 221 (857)
T PLN03077 145 GKMP---ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELD 221 (857)
T ss_pred hcCC---CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcc
Confidence 6543 235566777777777777777777777776542 1210 01
Q ss_pred hhhHHHHHHHHHhcCCChHHHHHHHHHHHccCCCCHHHHHHHHHhcCCHHHHHHHHHHHhcCCCccccCCCcchHHHHHH
Q 003918 138 DRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLEL 217 (786)
Q Consensus 138 ~~~w~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 217 (786)
..++..++.++.+.|+. +.|+.+|+++...++..++.++..+.+.|++++|.++|+++.... ...+..++..+
T Consensus 222 ~~~~n~Li~~y~k~g~~-~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g------~~Pd~~ty~~l 294 (857)
T PLN03077 222 VDVVNALITMYVKCGDV-VSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELS------VDPDLMTITSV 294 (857)
T ss_pred cchHhHHHHHHhcCCCH-HHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC------CCCChhHHHHH
Confidence 23455566666677777 888888887776666666777777888888888888888876431 12234456666
Q ss_pred HHHHhcccccccCCcHHHHHHhhhh-ccCchhHHHHHHHHHHHHhhccHHHHHHHHHHHhhccCchhcHHHHHHHHHHHH
Q 003918 218 CDLLTTHATEISGLNVDAIIRGGIR-KFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFE 296 (786)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 296 (786)
+..+...++... +..++....+ .++++ ...++.+...|.+.|++++|.++|++.. .|+...+..+..+|.+..
T Consensus 295 l~a~~~~g~~~~---a~~l~~~~~~~g~~~d-~~~~n~Li~~y~k~g~~~~A~~vf~~m~--~~d~~s~n~li~~~~~~g 368 (857)
T PLN03077 295 ISACELLGDERL---GREMHGYVVKTGFAVD-VSVCNSLIQMYLSLGSWGEAEKVFSRME--TKDAVSWTAMISGYEKNG 368 (857)
T ss_pred HHHHHhcCChHH---HHHHHHHHHHhCCccc-hHHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCeeeHHHHHHHHHhCC
Confidence 665555444322 2223332222 23333 6678888889999999999999988865 344444444444443221
Q ss_pred HHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhHhcccccCccchHHHHHHHHHhhhhhchhhhhhh
Q 003918 297 EIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSV 376 (786)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (786)
....++..+.+..
T Consensus 369 ---------------------------------------------------------~~~~A~~lf~~M~---------- 381 (857)
T PLN03077 369 ---------------------------------------------------------LPDKALETYALME---------- 381 (857)
T ss_pred ---------------------------------------------------------CHHHHHHHHHHHH----------
Confidence 1111111122110
Q ss_pred hhhcCCCCHHHHHHHHHhh--cCCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccC
Q 003918 377 LLRQNPHNVEQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNY 454 (786)
Q Consensus 377 ~l~~~p~~~~~~~~~~~~~--~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 454 (786)
.....|+... +......+ .|+.+.|.++++.+++.-. ..+..++..+...|.+.|++++|+++|+++.+.
T Consensus 382 ~~g~~Pd~~t-~~~ll~a~~~~g~~~~a~~l~~~~~~~g~-----~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~-- 453 (857)
T PLN03077 382 QDNVSPDEIT-IASVLSACACLGDLDVGVKLHELAERKGL-----ISYVVVANALIEMYSKCKCIDKALEVFHNIPEK-- 453 (857)
T ss_pred HhCCCCCcee-HHHHHHHHhccchHHHHHHHHHHHHHhCC-----CcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC--
Confidence 0123354433 32222233 3889999999999885421 246788999999999999999999999997643
Q ss_pred CChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHH
Q 003918 455 KTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLEST 534 (786)
Q Consensus 455 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 534 (786)
+. ..|..+...+.+.|+.++|..+|++++...+ .+...+......+...|+.+.+
T Consensus 454 -d~----vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~--------------------pd~~t~~~lL~a~~~~g~l~~~ 508 (857)
T PLN03077 454 -DV----ISWTSIIAGLRLNNRCFEALIFFRQMLLTLK--------------------PNSVTLIAALSACARIGALMCG 508 (857)
T ss_pred -Ce----eeHHHHHHHHHHCCCHHHHHHHHHHHHhCCC--------------------CCHhHHHHHHHHHhhhchHHHh
Confidence 33 6789999999999999999999999985433 3556677777778889999999
Q ss_pred HHHHHHHHhhc-cCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 003918 535 RAVYERILDLR-IATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFEN 613 (786)
Q Consensus 535 ~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 613 (786)
.+++..+++.. ..+..+...+..+|.+.|+.++|..+|+.. +.+...|..++..+. ..|+.++|.++|++
T Consensus 509 ~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~------~~d~~s~n~lI~~~~---~~G~~~~A~~lf~~ 579 (857)
T PLN03077 509 KEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH------EKDVVSWNILLTGYV---AHGKGSMAVELFNR 579 (857)
T ss_pred HHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc------CCChhhHHHHHHHHH---HcCCHHHHHHHHHH
Confidence 99999998863 334567788899999999999999999876 235677988777665 34889999999999
Q ss_pred HHhh--CCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcC
Q 003918 614 AVET--APADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGL 691 (786)
Q Consensus 614 al~~--~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 691 (786)
+.+. .|+ ...+..+...+.+.|.+++|..+|+.+.+..+-.|+...+...+..+.+.|++++|.++++++- . .
T Consensus 580 M~~~g~~Pd---~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-~-~ 654 (857)
T PLN03077 580 MVESGVNPD---EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP-I-T 654 (857)
T ss_pred HHHcCCCCC---cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC-C-C
Confidence 9885 454 4466777777888999999999999998766666778888999998899999999999998852 3 4
Q ss_pred CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Q 003918 692 PDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSAS 765 (786)
Q Consensus 692 p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~G~~~~a~~~~~~~~~~~~~ 765 (786)
|+ ..+|..+...+...|+.+.|....+++++. +|+ +...+..+.+.|...|+++++.++.+.|+..+-.
T Consensus 655 pd---~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l-~p~-~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~ 723 (857)
T PLN03077 655 PD---PAVWGALLNACRIHRHVELGELAAQHIFEL-DPN-SVGYYILLCNLYADAGKWDEVARVRKTMRENGLT 723 (857)
T ss_pred CC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhh-CCC-CcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCC
Confidence 54 668999999999999999999999999987 788 6888999999999999999999999877765443
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.97 E-value=6.5e-27 Score=265.17 Aligned_cols=261 Identities=15% Similarity=0.152 Sum_probs=225.2
Q ss_pred HcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhc
Q 003918 435 TYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKS 514 (786)
Q Consensus 435 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (786)
..+++++|...|++++...+..+ .....|..++.++...|++++|+..|++++...| ..
T Consensus 306 ~~~~y~~A~~~~~~al~~~~~~~-~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P--------------------~~ 364 (615)
T TIGR00990 306 ADESYEEAARAFEKALDLGKLGE-KEAIALNLRGTFKCLKGKHLEALADLSKSIELDP--------------------RV 364 (615)
T ss_pred hhhhHHHHHHHHHHHHhcCCCCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--------------------Cc
Confidence 35789999999999998652221 1237889999999999999999999999999999 77
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 003918 515 LRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSK 594 (786)
Q Consensus 515 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~ 594 (786)
...|..++.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|++++.. +|++...|..++..
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~ 442 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVT 442 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999999999999997 79998888876544
Q ss_pred HHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhH----HHH-HHHH
Q 003918 595 FVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGM----YEI-YIAR 669 (786)
Q Consensus 595 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~----~~~-~~~~ 669 (786)
+. ..|++++|+..|++++...|+ +..++..+|.++...|++++|+..|++++...|....... +.. ....
T Consensus 443 ~~---~~g~~~eA~~~~~~al~~~P~--~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~ 517 (615)
T TIGR00990 443 QY---KEGSIASSMATFRRCKKNFPE--APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALAL 517 (615)
T ss_pred HH---HCCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHH
Confidence 43 458999999999999999998 6789999999999999999999999999999987533221 111 1122
Q ss_pred HHHhcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHcc
Q 003918 670 AAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQF 726 (786)
Q Consensus 670 ~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 726 (786)
+...|++++|+.++++++.. .|+ +...+..+|.++...|++++|+.+|+++++.
T Consensus 518 ~~~~~~~~eA~~~~~kAl~l-~p~--~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 518 FQWKQDFIEAENLCEKALII-DPE--CDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHhhhHHHHHHHHHHHHhc-CCC--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 23468999999999999999 887 4558899999999999999999999999997
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.97 E-value=1.4e-26 Score=262.47 Aligned_cols=423 Identities=14% Similarity=0.120 Sum_probs=262.2
Q ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHhcCCChHHHHHH
Q 003918 82 PEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRV 161 (786)
Q Consensus 82 ~~~~~A~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~w~~~~~~~~~~~~~~~~A~~~ 161 (786)
|++++|+..|+++++..|+ +..|...+..+...|++++|...++++++.+|.+ ...|...+..+...|++ ++|+..
T Consensus 141 ~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~--~~a~~~~a~a~~~lg~~-~eA~~~ 216 (615)
T TIGR00990 141 KDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDY--SKALNRRANAYDGLGKY-ADALLD 216 (615)
T ss_pred CCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHcCCH-HHHHHH
Confidence 7888888888888888885 6678888888888888888888888888888864 67788888888888888 888888
Q ss_pred HHHHHccCCCCHHHHHHHHHhcCCHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHhcccccccCCcHHHHHHhhh
Q 003918 162 YRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGI 241 (786)
Q Consensus 162 ~~~~l~~~p~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (786)
|..+...++.+.......+. ..-...+......++... +.....|..+..++....... ....+....
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~-~~l~~~a~~~~~~~l~~~-------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 284 (615)
T TIGR00990 217 LTASCIIDGFRNEQSAQAVE-RLLKKFAESKAKEILETK-------PENLPSVTFVGNYLQSFRPKP----RPAGLEDSN 284 (615)
T ss_pred HHHHHHhCCCccHHHHHHHH-HHHHHHHHHHHHHHHhcC-------CCCCCCHHHHHHHHHHccCCc----chhhhhccc
Confidence 87776655544321111111 101122333333333221 111112222222211100000 000011111
Q ss_pred hccCchhHHHHHHHHHHHH---hhccHHHHHHHHHHHhhccCchhcHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccc
Q 003918 242 RKFTDEVGRLWTSLADYYI---RRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDE 318 (786)
Q Consensus 242 ~~~p~~~~~~~~~la~~y~---~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (786)
...+.. ...+..++..+. ..+.+++|...|++++...+
T Consensus 285 ~~~~~~-~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~-------------------------------------- 325 (615)
T TIGR00990 285 ELDEET-GNGQLQLGLKSPESKADESYEEAARAFEKALDLGK-------------------------------------- 325 (615)
T ss_pred cccccc-ccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCC--------------------------------------
Confidence 111110 111222221111 12345555555555543210
Q ss_pred ccCCcchhhhHhhhhhhHHHHHHhHhcccccCccchHHHHHHHHHhhhhhchhhhhhhhhhcCCCCHHHHHHHHHhh--c
Q 003918 319 EHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIF--E 396 (786)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~--~ 396 (786)
..|....+|..++.++ .
T Consensus 326 -------------------------------------------------------------~~~~~a~a~~~lg~~~~~~ 344 (615)
T TIGR00990 326 -------------------------------------------------------------LGEKEAIALNLRGTFKCLK 344 (615)
T ss_pred -------------------------------------------------------------CChhhHHHHHHHHHHHHHc
Confidence 1233333444444444 3
Q ss_pred CCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccC
Q 003918 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKN 476 (786)
Q Consensus 397 ~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~ 476 (786)
|++++|+..|++++ ..+| .....|..+|.++...|++++|+..|++++..+|+++ .+|..++.++...|+
T Consensus 345 g~~~eA~~~~~kal-~l~P-----~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~ 414 (615)
T TIGR00990 345 GKHLEALADLSKSI-ELDP-----RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDP----DIYYHRAQLHFIKGE 414 (615)
T ss_pred CCHHHHHHHHHHHH-HcCC-----CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCC
Confidence 77778888888877 3555 5677777888888888888888888888888877776 777778888888888
Q ss_pred HHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHH
Q 003918 477 FKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYA 556 (786)
Q Consensus 477 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 556 (786)
+++|+..|++++...| ++...|..++.++...|++++|+..|++++...|+++.++..+|
T Consensus 415 ~~~A~~~~~kal~l~P--------------------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg 474 (615)
T TIGR00990 415 FAQAGKDYQKSIDLDP--------------------DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYG 474 (615)
T ss_pred HHHHHHHHHHHHHcCc--------------------cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 8888888888887777 56677777777777888888888888888888888888888888
Q ss_pred HHHHHcccHHHHHHHHHHHHhhcCCCChHHHHH------HHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHH
Q 003918 557 LLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWV------TYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQY 630 (786)
Q Consensus 557 ~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~------~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 630 (786)
.++...|++++|+..|++++.. +|.+...+. ..+..+.. ..|++++|..+++++++.+|+ +...+..+
T Consensus 475 ~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~l~~~a~~~~~--~~~~~~eA~~~~~kAl~l~p~--~~~a~~~l 548 (615)
T TIGR00990 475 ELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLPLINKALALFQ--WKQDFIEAENLCEKALIIDPE--CDIAVATM 548 (615)
T ss_pred HHHHHccCHHHHHHHHHHHHhc--CCccccccccHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHhcCCC--cHHHHHHH
Confidence 8888888888888888888876 344322221 11111211 236777888888888887776 55677777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC
Q 003918 631 AKLEEDYGLAKRAMKVYDQATKAVPN 656 (786)
Q Consensus 631 a~~~~~~g~~~~A~~~~~~~l~~~p~ 656 (786)
|.++.+.|++++|+..|+++++..+.
T Consensus 549 a~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 549 AQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 88888888888888888887777664
No 20
>PLN03077 Protein ECB2; Provisional
Probab=99.97 E-value=2.3e-25 Score=262.82 Aligned_cols=587 Identities=10% Similarity=0.020 Sum_probs=306.6
Q ss_pred HhHHHHHHH-HHcCChhhHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCC-CHHH
Q 003918 28 KLWWRYLVA-KREAPFKKRFVIYERALKA-LPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHK-MPRI 104 (786)
Q Consensus 28 ~~w~~~~~~-~~~~~~~~~~~~~~~al~~-~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~ 104 (786)
..+...+.. ...+..++|..+|+...+. .|.+...+..++..+... +.++.+..++..+++..+. ++.+
T Consensus 52 ~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~ 123 (857)
T PLN03077 52 HDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWK--------RAVEEGSRVCSRALSSHPSLGVRL 123 (857)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhC--------CCHHHHHHHHHHHHHcCCCCCchH
Confidence 334444332 3456667777777666654 233555565555554432 5566677777776665542 3445
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHhcCCChHHHHHHHHHHHcc--CCCCH--HHHHHHH
Q 003918 105 WIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKY--DPSHI--EDFIEFL 180 (786)
Q Consensus 105 w~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~w~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~--~~~~~~~ 180 (786)
+..++..+.+.|+++.|.++|++... | +...|..++..+.+.|.. ++|..+|+++... .|+.. ..++..+
T Consensus 124 ~n~li~~~~~~g~~~~A~~~f~~m~~--~---d~~~~n~li~~~~~~g~~-~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~ 197 (857)
T PLN03077 124 GNAMLSMFVRFGELVHAWYVFGKMPE--R---DLFSWNVLVGGYAKAGYF-DEALCLYHRMLWAGVRPDVYTFPCVLRTC 197 (857)
T ss_pred HHHHHHHHHhCCChHHHHHHHhcCCC--C---CeeEHHHHHHHHHhCCCH-HHHHHHHHHHHHcCCCCChhHHHHHHHHh
Confidence 56666666667777777777776543 2 134577777766667777 7777777776642 34433 3334444
Q ss_pred HhcCCHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHhcccccccCCcHHHHHHhhhhccCchhHHHHHHHHHHHH
Q 003918 181 VKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYI 260 (786)
Q Consensus 181 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~y~ 260 (786)
...+++..+.+++..+++.. -..+..++..++..+.+.++.. .+..+++.. |......|+.+...|.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~g------~~~~~~~~n~Li~~y~k~g~~~---~A~~lf~~m----~~~d~~s~n~li~~~~ 264 (857)
T PLN03077 198 GGIPDLARGREVHAHVVRFG------FELDVDVVNALITMYVKCGDVV---SARLVFDRM----PRRDCISWNAMISGYF 264 (857)
T ss_pred CCccchhhHHHHHHHHHHcC------CCcccchHhHHHHHHhcCCCHH---HHHHHHhcC----CCCCcchhHHHHHHHH
Confidence 45566666666666665421 1223445666666666555432 122333332 2222456777777777
Q ss_pred hhccHHHHHHHHHHHhhc--cCchhcHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHH
Q 003918 261 RRELFEKARDIFEEGMMT--VVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAE 338 (786)
Q Consensus 261 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (786)
+.|++++|..+|++.... .|+...+..+..++......
T Consensus 265 ~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~---------------------------------------- 304 (857)
T PLN03077 265 ENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDE---------------------------------------- 304 (857)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh----------------------------------------
Confidence 777777777777776653 34444444444333221100
Q ss_pred HHHhHhcccccCccchHHHHHHHHHhhhhhchhhhhhhhhhcCCCCHHHHHHHHHhhc--CCchhHHHHHHHHHhccCCC
Q 003918 339 FVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPM 416 (786)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~~~~al~~~~~~ 416 (786)
.....-+.. ......+.+...+..++..+. |+.++|.++|++.. .
T Consensus 305 -----------------~~a~~l~~~-----------~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~-- 351 (857)
T PLN03077 305 -----------------RLGREMHGY-----------VVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME---T-- 351 (857)
T ss_pred -----------------HHHHHHHHH-----------HHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC---C--
Confidence 000000000 001112234445555555553 66666666666532 1
Q ss_pred ccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhc--cCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchH
Q 003918 417 KAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQV--NYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVE 494 (786)
Q Consensus 417 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~ 494 (786)
.++..|..+...|.+.|++++|.++|+++... .|+. ..+..+...+.+.|+++.|.+++..+++...
T Consensus 352 ----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~-----~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~-- 420 (857)
T PLN03077 352 ----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDE-----ITIASVLSACACLGDLDVGVKLHELAERKGL-- 420 (857)
T ss_pred ----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCc-----eeHHHHHHHHhccchHHHHHHHHHHHHHhCC--
Confidence 23445666666666666666666666665442 2443 2334444445566666666666666664322
Q ss_pred HhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHH
Q 003918 495 VRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYER 574 (786)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 574 (786)
..+..++..++..|.+.|++++|.++|+++.+ .+...|..+...+.+.|+.++|+.+|++
T Consensus 421 -----------------~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~ 480 (857)
T PLN03077 421 -----------------ISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQ 480 (857)
T ss_pred -----------------CcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHH
Confidence 02455666677777777777777777776543 3555677777777777777777777777
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCcc-----------------------------CcHH
Q 003918 575 GVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPAD-----------------------------AVKP 625 (786)
Q Consensus 575 al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-----------------------------~~~~ 625 (786)
++... .|+. ..+...+..+. ..|..+.+++++..+++..... .+..
T Consensus 481 m~~~~-~pd~-~t~~~lL~a~~---~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~ 555 (857)
T PLN03077 481 MLLTL-KPNS-VTLIAALSACA---RIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVV 555 (857)
T ss_pred HHhCC-CCCH-hHHHHHHHHHh---hhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChh
Confidence 76542 2333 33333232221 2234444444444444432211 0234
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChhHHHHHHHHHH
Q 003918 626 LYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAE 705 (786)
Q Consensus 626 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~ 705 (786)
.|..++..+.+.|+.++|.++|+++.+... .|+...+...+..+.+.|..++|.++|+.+.+. .+-......|..++.
T Consensus 556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~-~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~-~gi~P~~~~y~~lv~ 633 (857)
T PLN03077 556 SWNILLTGYVAHGKGSMAVELFNRMVESGV-NPDEVTFISLLCACSRSGMVTQGLEYFHSMEEK-YSITPNLKHYACVVD 633 (857)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCcccHHHHHHHHhhcChHHHHHHHHHHHHHH-hCCCCchHHHHHHHH
Confidence 555555555555555555555555544321 122223333344444555555555555555522 111112334555555
Q ss_pred HHHHcCChHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003918 706 LEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREML 756 (786)
Q Consensus 706 ~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~G~~~~a~~~~ 756 (786)
++.+.|++++|.++++++- . .|+ ...|..++..+..+|+.+.++.+.
T Consensus 634 ~l~r~G~~~eA~~~~~~m~-~-~pd--~~~~~aLl~ac~~~~~~e~~e~~a 680 (857)
T PLN03077 634 LLGRAGKLTEAYNFINKMP-I-TPD--PAVWGALLNACRIHRHVELGELAA 680 (857)
T ss_pred HHHhCCCHHHHHHHHHHCC-C-CCC--HHHHHHHHHHHHHcCChHHHHHHH
Confidence 5555555555555555542 1 233 455555555555555555554444
No 21
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.95 E-value=1.3e-23 Score=241.93 Aligned_cols=463 Identities=14% Similarity=0.104 Sum_probs=351.7
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHhcCCChHHHHHHHHHHHcc--CCCCH--HHHHH
Q 003918 103 RIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKY--DPSHI--EDFIE 178 (786)
Q Consensus 103 ~~w~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~w~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~--~~~~~ 178 (786)
..|...+..+...|++..|..+|+.+....|...+...+..++..+.+.++. +.+.+++..+.+. .|+.. ..++.
T Consensus 88 ~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~-~~a~~l~~~m~~~g~~~~~~~~n~Li~ 166 (697)
T PLN03081 88 VSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSI-RCVKAVYWHVESSGFEPDQYMMNRVLL 166 (697)
T ss_pred eeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 3688888888889999999999998876544322356678888888888888 9999999988764 44433 56778
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHhcccccccCCcHHHHHHhhhhccCchhHHHHHHHHHH
Q 003918 179 FLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADY 258 (786)
Q Consensus 179 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~ 258 (786)
.|.+.|++++|.++|+++... ....|+.+...
T Consensus 167 ~y~k~g~~~~A~~lf~~m~~~------------------------------------------------~~~t~n~li~~ 198 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEMPER------------------------------------------------NLASWGTIIGG 198 (697)
T ss_pred HHhcCCCHHHHHHHHhcCCCC------------------------------------------------CeeeHHHHHHH
Confidence 899999999999988777420 13468888889
Q ss_pred HHhhccHHHHHHHHHHHhhccCc--hhcHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhH
Q 003918 259 YIRRELFEKARDIFEEGMMTVVT--VRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSM 336 (786)
Q Consensus 259 y~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (786)
|.+.|++++|..+|++.+...+. ...+..+..++
T Consensus 199 ~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~-------------------------------------------- 234 (697)
T PLN03081 199 LVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRAS-------------------------------------------- 234 (697)
T ss_pred HHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHH--------------------------------------------
Confidence 99999999999999998864322 11111111111
Q ss_pred HHHHHhHhcccccCccchHHHHHHHHHhhhhhchhhhhhhhhhcCCCCHHHHHHHHHhhcCCchhHHHHHHHHHhccCCC
Q 003918 337 AEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPM 416 (786)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~ 416 (786)
.-.|..+.+.+++..+++.-
T Consensus 235 ---------------------------------------------------------~~~~~~~~~~~l~~~~~~~g--- 254 (697)
T PLN03081 235 ---------------------------------------------------------AGLGSARAGQQLHCCVLKTG--- 254 (697)
T ss_pred ---------------------------------------------------------hcCCcHHHHHHHHHHHHHhC---
Confidence 00134455556666555321
Q ss_pred ccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhc--CCchH
Q 003918 417 KAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATA--EPSVE 494 (786)
Q Consensus 417 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~~~~ 494 (786)
...+..++..+...|.+.|++++|+++|+++.. .++ ..|..++..+.+.|++++|.++|+++.. +.|
T Consensus 255 --~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~~~----vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p-- 323 (697)
T PLN03081 255 --VVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE---KTT----VAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI-- 323 (697)
T ss_pred --CCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC---CCh----hHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--
Confidence 113566778888899999999999999988743 233 7888899999999999999999988864 334
Q ss_pred HhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhc-cCCHHHHHHHHHHHHHcccHHHHHHHHH
Q 003918 495 VRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLR-IATPQIIINYALLLEEHKYFEDAFRVYE 573 (786)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~ 573 (786)
+...+..++..+.+.|+++.|.+++..+++.. +.+..++..++..|.+.|++++|.++|+
T Consensus 324 -------------------d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~ 384 (697)
T PLN03081 324 -------------------DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFD 384 (697)
T ss_pred -------------------CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHH
Confidence 45677778888888999999999999998874 5567788899999999999999999998
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 003918 574 RGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKA 653 (786)
Q Consensus 574 ~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 653 (786)
++.+ | +...|..++..+. ..|+.++|.++|+++.+..... +...+..+...+...|..++|.++|+.+.+.
T Consensus 385 ~m~~----~-d~~t~n~lI~~y~---~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~ 455 (697)
T PLN03081 385 RMPR----K-NLISWNALIAGYG---NHGRGTKAVEMFERMIAEGVAP-NHVTFLAVLSACRYSGLSEQGWEIFQSMSEN 455 (697)
T ss_pred hCCC----C-CeeeHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 8754 3 4557888776665 3478999999999988763321 4567788888888899999999999998876
Q ss_pred CCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCCCH
Q 003918 654 VPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDT 733 (786)
Q Consensus 654 ~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~~~~ 733 (786)
.+-.|....+...+..+.+.|++++|.++++++- . .|+ ..+|..+...+...|+++.|..+++++++. .|+ +.
T Consensus 456 ~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~-~-~p~---~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~-~p~-~~ 528 (697)
T PLN03081 456 HRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP-F-KPT---VNMWAALLTACRIHKNLELGRLAAEKLYGM-GPE-KL 528 (697)
T ss_pred cCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC-C-CCC---HHHHHHHHHHHHHcCCcHHHHHHHHHHhCC-CCC-CC
Confidence 6656677778888888888999999998887642 2 343 557888999999999999999999998886 676 46
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 003918 734 EFWNRWHEFEVNHGNEDTFREMLRIKRSVSA 764 (786)
Q Consensus 734 ~~~~~~~~~~~~~G~~~~a~~~~~~~~~~~~ 764 (786)
..|..+++.+.+.|+.++|.++++.++..+-
T Consensus 529 ~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 529 NNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559 (697)
T ss_pred cchHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 7888899999999999999999987776543
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.95 E-value=1.3e-23 Score=242.24 Aligned_cols=445 Identities=11% Similarity=0.054 Sum_probs=315.8
Q ss_pred hHHHHhhCCCChHhHHHHHHHH-HcCChhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHH
Q 003918 16 YEEELLRNPFSLKLWWRYLVAK-REAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERA 94 (786)
Q Consensus 16 ~~~~l~~~p~~~~~w~~~~~~~-~~~~~~~~~~~~~~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 94 (786)
+++ -..+|.+.....+++... -.+..++|..+|+++....|.+...|..++...... +++++|..+|+++
T Consensus 5 ~~~-~~~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~--------g~~~~A~~~~~~a 75 (765)
T PRK10049 5 LRQ-ALKSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNL--------KQWQNSLTLWQKA 75 (765)
T ss_pred hhh-hhccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHH
Confidence 344 456777777766666644 367899999999999998999999999999998876 9999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHhcCCChHHHHHHHHHHHccCCCCHH
Q 003918 95 LVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIE 174 (786)
Q Consensus 95 l~~~p~~~~~w~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~w~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 174 (786)
++..|.++.++..++..+...++++.|...+++++...|.+ .. |..++.++...|++ ++|+..|+++++..|++..
T Consensus 76 l~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~--~~-~~~la~~l~~~g~~-~~Al~~l~~al~~~P~~~~ 151 (765)
T PRK10049 76 LSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDK--AN-LLALAYVYKRAGRH-WDELRAMTQALPRAPQTQQ 151 (765)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HH-HHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCHH
Confidence 99999999999999999999999999999999999999975 66 89999999999999 9999999999999999985
Q ss_pred HH---HHHHHhcCCHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHhcccccccCCcHHHHHHhhhhccCchhHHH
Q 003918 175 DF---IEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRL 251 (786)
Q Consensus 175 ~~---~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 251 (786)
.+ ...+...|..++|++.++++... |. +..... ..|.. ..+
T Consensus 152 ~~~~la~~l~~~~~~e~Al~~l~~~~~~--------p~----~~~~l~-----------------------~~~~~-~~~ 195 (765)
T PRK10049 152 YPTEYVQALRNNRLSAPALGAIDDANLT--------PA----EKRDLE-----------------------ADAAA-ELV 195 (765)
T ss_pred HHHHHHHHHHHCCChHHHHHHHHhCCCC--------HH----HHHHHH-----------------------HHHHH-HHH
Confidence 54 35666789999999988877631 11 000000 00000 001
Q ss_pred HHHHHHHHHhhccH---HHHHHHHHHHhhccCchhcHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhh
Q 003918 252 WTSLADYYIRRELF---EKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDI 328 (786)
Q Consensus 252 ~~~la~~y~~~g~~---~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (786)
...++......+++ ++|+..|++++...|..++.
T Consensus 196 r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~------------------------------------------- 232 (765)
T PRK10049 196 RLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDA------------------------------------------- 232 (765)
T ss_pred HhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCcc-------------------------------------------
Confidence 11111111122334 66777777777543322110
Q ss_pred HhhhhhhHHHHHHhHhcccccCccchHHHHHHHHHhhhhhchhhhhhhhhhcCCCCHHHHHH-HHHhh-cCCchhHHHHH
Q 003918 329 RLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHR-RVKIF-EGNPTKQILTY 406 (786)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~-~~~~~-~~~~~~a~~~~ 406 (786)
.|.....++. ++.++ .+++++|+..|
T Consensus 233 ----------------------------------------------------~~~~~~a~~d~l~~Ll~~g~~~eA~~~~ 260 (765)
T PRK10049 233 ----------------------------------------------------TADYQRARIDRLGALLARDRYKDVISEY 260 (765)
T ss_pred ----------------------------------------------------chHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 0000000010 11222 27788999999
Q ss_pred HHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 003918 407 TEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRR 486 (786)
Q Consensus 407 ~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 486 (786)
++++.. ++ ..+.....| ++..+...|++++|+..|++++..+|.+..........++..+...|++++|+.++++
T Consensus 261 ~~ll~~-~~--~~P~~a~~~--la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~ 335 (765)
T PRK10049 261 QRLKAE-GQ--IIPPWAQRW--VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAH 335 (765)
T ss_pred HHhhcc-CC--CCCHHHHHH--HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 998853 22 011334444 5889999999999999999999888765321124455666667889999999999999
Q ss_pred HhcCCchHHhhhhhccCChhHHHHhhh--cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHccc
Q 003918 487 ATAEPSVEVRRRVAADGNEPVQMKLHK--SLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKY 564 (786)
Q Consensus 487 al~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~ 564 (786)
+....|... . ...+....++ ...++..++.++...|++++|+..|++++...|.++.++..+|.++...|+
T Consensus 336 ~~~~~P~~~----~---~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~ 408 (765)
T PRK10049 336 TINNSPPFL----R---LYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGW 408 (765)
T ss_pred HhhcCCceE----e---ecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 998766110 0 0000000001 124556677788888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCcc
Q 003918 565 FEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPAD 621 (786)
Q Consensus 565 ~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 621 (786)
+++|++.+++++.. +|++..++...+.... +.|++++|...++++++..|++
T Consensus 409 ~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al---~~~~~~~A~~~~~~ll~~~Pd~ 460 (765)
T PRK10049 409 PRAAENELKKAEVL--EPRNINLEVEQAWTAL---DLQEWRQMDVLTDDVVAREPQD 460 (765)
T ss_pred HHHHHHHHHHHHhh--CCCChHHHHHHHHHHH---HhCCHHHHHHHHHHHHHhCCCC
Confidence 88888888888887 5888877776554333 4578888888888888888883
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.94 E-value=4.6e-23 Score=232.59 Aligned_cols=346 Identities=10% Similarity=0.081 Sum_probs=252.6
Q ss_pred HcCChhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCc
Q 003918 38 REAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKF 117 (786)
Q Consensus 38 ~~~~~~~~~~~~~~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~w~~~~~~~~~~~~ 117 (786)
+.+++..+...++..+...|.+.+.+..++...+.. |++++|...|+++++.+|+++.+|..++..+...|+
T Consensus 54 ~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~--------g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~ 125 (656)
T PRK15174 54 RKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLAS--------SQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQ 125 (656)
T ss_pred hcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhc--------CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Confidence 467888888888889999999888888888776643 888899999999999899998899888888888888
Q ss_pred HHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHhcCCChHHHHHHHHHHHccCCCCHHHHH--HHHHhcCCHHHHHHHHHH
Q 003918 118 ITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFI--EFLVKSKLWQEAAERLAS 195 (786)
Q Consensus 118 ~~~A~~~~~~al~~~p~~~~~~~w~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~--~~~~~~g~~~~A~~~~~~ 195 (786)
++.|...|++++..+|.+ ..+|...+..+...|++ ++|...+++++...|++...+. ..+...|++++|+..++.
T Consensus 126 ~~~Ai~~l~~Al~l~P~~--~~a~~~la~~l~~~g~~-~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 126 YATVADLAEQAWLAFSGN--SQIFALHLRTLVLMDKE-LQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARA 202 (656)
T ss_pred HHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHCCCh-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999999888864 77788888888888888 8888888888888888775432 235567888888887777
Q ss_pred HhcCCCccccCCCcchHHHHHHHHHHhcccccccCCcHHHHHHhhhhccCchhHHHHHHHHHHHHhhccHHHHHHHHHHH
Q 003918 196 VLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEG 275 (786)
Q Consensus 196 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~y~~~g~~~~A~~~~~~a 275 (786)
++... |.........++..+...|++++|+..|+++
T Consensus 203 ~l~~~--------------------------------------------~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~a 238 (656)
T PRK15174 203 LLPFF--------------------------------------------ALERQESAGLAVDTLCAVGKYQEAIQTGESA 238 (656)
T ss_pred HHhcC--------------------------------------------CCcchhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 76421 0000112233455667778888888888887
Q ss_pred hhccCchhcHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhHhcccccCccchH
Q 003918 276 MMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDV 355 (786)
Q Consensus 276 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (786)
+...|+.
T Consensus 239 l~~~p~~------------------------------------------------------------------------- 245 (656)
T PRK15174 239 LARGLDG------------------------------------------------------------------------- 245 (656)
T ss_pred HhcCCCC-------------------------------------------------------------------------
Confidence 7654432
Q ss_pred HHHHHHHHhhhhhchhhhhhhhhhcCCCCHHHHHHHHHhh--cCCchh----HHHHHHHHHhccCCCccCCCcHHHHHHH
Q 003918 356 DLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIF--EGNPTK----QILTYTEAVRTVDPMKAVGKPHTLWVAF 429 (786)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~--~~~~~~----a~~~~~~al~~~~~~~~~~~~~~~~~~~ 429 (786)
...+..++..+ .|++++ |+..|++++ ..+| +++.++..+
T Consensus 246 -----------------------------~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al-~l~P-----~~~~a~~~l 290 (656)
T PRK15174 246 -----------------------------AALRRSLGLAYYQSGRSREAKLQAAEHWRHAL-QFNS-----DNVRIVTLY 290 (656)
T ss_pred -----------------------------HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH-hhCC-----CCHHHHHHH
Confidence 22222223322 244443 777888888 3566 567788888
Q ss_pred HHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHH
Q 003918 430 AKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQM 509 (786)
Q Consensus 430 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 509 (786)
|..+...|++++|+..|++++..+|+++ .++..++.++.+.|++++|+..|++++...|
T Consensus 291 g~~l~~~g~~~eA~~~l~~al~l~P~~~----~a~~~La~~l~~~G~~~eA~~~l~~al~~~P----------------- 349 (656)
T PRK15174 291 ADALIRTGQNEKAIPLLQQSLATHPDLP----YVRAMYARALRQVGQYTAASDEFVQLAREKG----------------- 349 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-----------------
Confidence 8888888888888888888888888776 7777788888888888888888888887777
Q ss_pred HhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCC
Q 003918 510 KLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYP 582 (786)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p 582 (786)
.....+...+.++...|++++|+..|+++++..|++. ...+++|+..|.+++...+.|
T Consensus 350 ---~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~~~~~~~~~~~~~ 407 (656)
T PRK15174 350 ---VTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLLALDGQISAVNLP 407 (656)
T ss_pred ---cchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHHHHHHHHHhcCCc
Confidence 4444455556777778888888888888888877764 233456666666666654333
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.94 E-value=1.2e-22 Score=234.24 Aligned_cols=433 Identities=11% Similarity=0.015 Sum_probs=308.9
Q ss_pred HhCCCCHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhCC
Q 003918 54 KALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALP 133 (786)
Q Consensus 54 ~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~~~A~~~~~~al~~~p 133 (786)
+..|.++..-..|+.+..-. |+.++|+.+|+++....|.+..++..++..+...++++.|..+|+++++.+|
T Consensus 9 ~~~~~~~~~~~d~~~ia~~~--------g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P 80 (765)
T PRK10049 9 LKSALSNNQIADWLQIALWA--------GQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP 80 (765)
T ss_pred hccCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34555555555555554433 8999999999999998899999999999999999999999999999999999
Q ss_pred CCcchhhHHHHHHHHHhcCCChHHHHHHHHHHHccCCCCHHHHH---HHHHhcCCHHHHHHHHHHHhcCCCccccCCCcc
Q 003918 134 VTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFI---EFLVKSKLWQEAAERLASVLNDDQFYSIKGKTK 210 (786)
Q Consensus 134 ~~~~~~~w~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~---~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~ 210 (786)
.+ ..++..++.++...+++ ++|+..++++++.+|++.. +. .++...|++++|+..+++++.
T Consensus 81 ~~--~~a~~~la~~l~~~g~~-~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~------------ 144 (765)
T PRK10049 81 QN--DDYQRGLILTLADAGQY-DEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALP------------ 144 (765)
T ss_pred CC--HHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHH------------
Confidence 75 77888888888899999 9999999999999999987 54 566688999999998888874
Q ss_pred hHHHHHHHHHHhcccccccCCcHHHHHHhhhhccCchhHHHHHHHHHHHHhhccHHHHHHHHHHHhhccCchhcHHHHHH
Q 003918 211 HRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFD 290 (786)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 290 (786)
..|++ +.++..++..+...|..+.|+..++++.. .|..... .-+.
T Consensus 145 --------------------------------~~P~~-~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~-l~~~ 189 (765)
T PRK10049 145 --------------------------------RAPQT-QQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRD-LEAD 189 (765)
T ss_pred --------------------------------hCCCC-HHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHH-HHHH
Confidence 23333 56677788888888999999999988775 4431000 0000
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhHhcccccCccchHHHHHHHHHhhhhhch
Q 003918 291 SYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRP 370 (786)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (786)
..... .++
T Consensus 190 ~~~~~----------------------------------------------------------------~r~-------- 197 (765)
T PRK10049 190 AAAEL----------------------------------------------------------------VRL-------- 197 (765)
T ss_pred HHHHH----------------------------------------------------------------HHh--------
Confidence 00000 000
Q ss_pred hhhhhhhhhcCCCCHHHHHHHHHhhcCCc---hhHHHHHHHHHhcc--CCCccCCCcHHHHHHHHHHHHHcCChhHHHHH
Q 003918 371 ELANSVLLRQNPHNVEQWHRRVKIFEGNP---TKQILTYTEAVRTV--DPMKAVGKPHTLWVAFAKLYETYKDIANARVI 445 (786)
Q Consensus 371 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~~---~~a~~~~~~al~~~--~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 445 (786)
...+.. ...+.+ ++|+..|+..+... +|.. .+....++......+...|++++|+..
T Consensus 198 --------~~~~~~---------~~~~r~~~ad~Al~~~~~ll~~~~~~p~~-~~~~~~a~~d~l~~Ll~~g~~~eA~~~ 259 (765)
T PRK10049 198 --------SFMPTR---------SEKERYAIADRALAQYDALEALWHDNPDA-TADYQRARIDRLGALLARDRYKDVISE 259 (765)
T ss_pred --------hccccc---------ChhHHHHHHHHHHHHHHHHHhhcccCCcc-chHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 000000 000111 56777777777431 2210 011122223222334577999999999
Q ss_pred HHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHH
Q 003918 446 FDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLE 525 (786)
Q Consensus 446 ~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (786)
|++++...|..+.. ...| ++.++...|++++|+.+|++++..+|... .........++..+
T Consensus 260 ~~~ll~~~~~~P~~-a~~~--la~~yl~~g~~e~A~~~l~~~l~~~p~~~----------------~~~~~~~~~L~~a~ 320 (765)
T PRK10049 260 YQRLKAEGQIIPPW-AQRW--VASAYLKLHQPEKAQSILTELFYHPETIA----------------DLSDEELADLFYSL 320 (765)
T ss_pred HHHhhccCCCCCHH-HHHH--HHHHHHhcCCcHHHHHHHHHHhhcCCCCC----------------CCChHHHHHHHHHH
Confidence 99999876433311 1333 57788999999999999999998776100 00134455566667
Q ss_pred HHcCChHHHHHHHHHHHhhccCC---------------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHH
Q 003918 526 ESLGNLESTRAVYERILDLRIAT---------------PQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVT 590 (786)
Q Consensus 526 ~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~ 590 (786)
...|++++|+..++++....|.. ..++..++.++...|++++|++.+++++.. .|.+..+|..
T Consensus 321 ~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~ 398 (765)
T PRK10049 321 LESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRID 398 (765)
T ss_pred HhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 88999999999999999987632 345667788888888888888888888886 6888888887
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhh
Q 003918 591 YLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLG 661 (786)
Q Consensus 591 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 661 (786)
.+..+. ..|++++|+..++++++..|+ +..++...|......|++++|...++++++..|+++.+.
T Consensus 399 lA~l~~---~~g~~~~A~~~l~~al~l~Pd--~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 399 YASVLQ---ARGWPRAAENELKKAEVLEPR--NINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHHHHH---hcCCHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 665443 347788888888888888888 567888888888888888888888888888888876444
No 25
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.94 E-value=7e-21 Score=220.66 Aligned_cols=524 Identities=11% Similarity=0.058 Sum_probs=277.5
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHhcCCChHHHHHHHHH
Q 003918 85 ETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRR 164 (786)
Q Consensus 85 ~~A~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~w~~~~~~~~~~~~~~~~A~~~~~~ 164 (786)
..+...+++.+.. +.+...++.....+.+.|++..|.++|+..........+...+..++..+...+.. ++|..+|+.
T Consensus 354 ~~~~~~~~~~~~~-~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~-~eAl~lf~~ 431 (1060)
T PLN03218 354 ENSLAAYNGGVSG-KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAV-KEAFRFAKL 431 (1060)
T ss_pred hhhHHHhccccCC-CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCH-HHHHHHHHH
Confidence 3345555555553 34555566666666788999999999999877654322233444556667777888 999999988
Q ss_pred HHccCCCCH--HHHHHHHHhcCCHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHhcccccccCCcHHHHHHhhhh
Q 003918 165 YLKYDPSHI--EDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIR 242 (786)
Q Consensus 165 ~l~~~p~~~--~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (786)
+.. |+.. ..++..+.+.|++++|.++|+.+.+.. ...+..+|..++..+.+.++... +..+++.+..
T Consensus 432 M~~--pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G------l~pD~~tynsLI~~y~k~G~vd~---A~~vf~eM~~ 500 (1060)
T PLN03218 432 IRN--PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAG------LKADCKLYTTLISTCAKSGKVDA---MFEVFHEMVN 500 (1060)
T ss_pred cCC--CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhCcCHHH---HHHHHHHHHH
Confidence 765 5433 566678889999999999999987531 22345567777776666555432 3334444433
Q ss_pred cc-CchhHHHHHHHHHHHHhhccHHHHHHHHHHHhhc--cCchhcHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccc
Q 003918 243 KF-TDEVGRLWTSLADYYIRRELFEKARDIFEEGMMT--VVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEE 319 (786)
Q Consensus 243 ~~-p~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (786)
.- .++ ...|..++..|.+.|++++|..+|++.... .|+...+..+..+|..
T Consensus 501 ~Gv~Pd-vvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k------------------------- 554 (1060)
T PLN03218 501 AGVEAN-VHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ------------------------- 554 (1060)
T ss_pred cCCCCC-HHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-------------------------
Confidence 21 223 567777777777777777777777776543 2333222222222211
Q ss_pred cCCcchhhhHhhhhhhHHHHHHhHhcccccCccchHHHHHHHHHhhhhhchhhhhhhhhhcCCCCHHHHHHHHHhhcCCc
Q 003918 320 HGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNP 399 (786)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~ 399 (786)
.|+.
T Consensus 555 ----------------------------------------------------------------------------~G~~ 558 (1060)
T PLN03218 555 ----------------------------------------------------------------------------SGAV 558 (1060)
T ss_pred ----------------------------------------------------------------------------CCCH
Confidence 1344
Q ss_pred hhHHHHHHHHHhc---cCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccC-CChhhHHHHHHHHHHHHHhcc
Q 003918 400 TKQILTYTEAVRT---VDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNY-KTVDHLASIWCEWAEMELRHK 475 (786)
Q Consensus 400 ~~a~~~~~~al~~---~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~a~~~~~~g 475 (786)
++|.++|++.... +.| +...|..+...|.+.|++++|.++|+++.+.+. .++ ..|..++..+.+.|
T Consensus 559 deA~~lf~eM~~~~~gi~P------D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~----~tynsLI~ay~k~G 628 (1060)
T PLN03218 559 DRAFDVLAEMKAETHPIDP------DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTP----EVYTIAVNSCSQKG 628 (1060)
T ss_pred HHHHHHHHHHHHhcCCCCC------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCh----HHHHHHHHHHHhcC
Confidence 4444444443321 111 233444444444444444444444444444321 111 34444444444444
Q ss_pred CHHHHHHHHHHHhcC--CchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhc-cCCHHHH
Q 003918 476 NFKGALELMRRATAE--PSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLR-IATPQII 552 (786)
Q Consensus 476 ~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 552 (786)
++++|.++|+++... .| +...|..++..+.+.|++++|.++|+.+.+.. +.+...|
T Consensus 629 ~~deAl~lf~eM~~~Gv~P---------------------D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ty 687 (1060)
T PLN03218 629 DWDFALSIYDDMKKKGVKP---------------------DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSY 687 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCC---------------------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 444444444444432 22 23344444444444444444444444444431 2233444
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHH
Q 003918 553 INYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAK 632 (786)
Q Consensus 553 ~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~ 632 (786)
..++..|.+.|++++|.++|+++.... ...+...|..++..+. ..|++++|.++|+++....-. ++...|..+..
T Consensus 688 nsLI~ay~k~G~~eeA~~lf~eM~~~g-~~PdvvtyN~LI~gy~---k~G~~eeAlelf~eM~~~Gi~-Pd~~Ty~sLL~ 762 (1060)
T PLN03218 688 SSLMGACSNAKNWKKALELYEDIKSIK-LRPTVSTMNALITALC---EGNQLPKALEVLSEMKRLGLC-PNTITYSILLV 762 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHH
Confidence 444444444444444444444443321 1222333444333332 224444444444444433110 02333444444
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHH-----------------------HhcChhHHHHHHHHHHHh
Q 003918 633 LEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAA-----------------------EIFGVPKTREIYEQAIES 689 (786)
Q Consensus 633 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~-----------------------~~~~~~~A~~~~~~al~~ 689 (786)
.+.+.|++++|..++..+++.... ++...+...+.++. ..+..+.|..+|+++++.
T Consensus 763 a~~k~G~le~A~~l~~~M~k~Gi~-pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~ 841 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKEDGIK-PNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA 841 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC
Confidence 444444444444444444443221 11211222111110 012235699999999988
Q ss_pred cCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHhhh
Q 003918 690 GLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGN-EDTFREMLRIKRSVSASY 766 (786)
Q Consensus 690 ~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~G~-~~~a~~~~~~~~~~~~~~ 766 (786)
|... +...+..+.....+.+....+..+++.......+. +...+..+++.+ |+ .++|..+++.+...+-.+
T Consensus 842 Gi~P--d~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~-~~~~y~~Li~g~---~~~~~~A~~l~~em~~~Gi~p 913 (1060)
T PLN03218 842 GTLP--TMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQ-KQSNLSTLVDGF---GEYDPRAFSLLEEAASLGVVP 913 (1060)
T ss_pred CCCC--CHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCc-chhhhHHHHHhh---ccChHHHHHHHHHHHHcCCCC
Confidence 6433 23456666666677788888888888765442222 356677777654 43 468999998888877666
No 26
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.94 E-value=1.9e-22 Score=232.28 Aligned_cols=463 Identities=13% Similarity=0.054 Sum_probs=360.0
Q ss_pred HHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhCCCCcchh
Q 003918 62 LWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMH--KMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDR 139 (786)
Q Consensus 62 ~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~w~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 139 (786)
.|...+...... |++++|..+|+......| -++..+..++..+.+.++++.|..++..+...-.. .+..
T Consensus 89 ~~~~~i~~l~~~--------g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~-~~~~ 159 (697)
T PLN03081 89 SLCSQIEKLVAC--------GRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFE-PDQY 159 (697)
T ss_pred eHHHHHHHHHcC--------CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-cchH
Confidence 577777665543 889999999999887543 35677888999999999999999999988774322 2467
Q ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHccCCCCHHHHHHHHHhcCCHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHH
Q 003918 140 IWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCD 219 (786)
Q Consensus 140 ~w~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 219 (786)
.+..++.++.+.|+. +.|+++|+++.+.+...+..++..+.+.|++++|.++|++++... ..
T Consensus 160 ~~n~Li~~y~k~g~~-~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g------~~----------- 221 (697)
T PLN03081 160 MMNRVLLMHVKCGML-IDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDG------SD----------- 221 (697)
T ss_pred HHHHHHHHHhcCCCH-HHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC------CC-----------
Confidence 788899999999999 999999999987666667889999999999999999999997421 00
Q ss_pred HHhcccccccCCcHHHHHHhhhhccCchhHHHHHHHHHHHHhhccHHHHHHHHHHHhhccCchhcHHHHHHHHHHHHHHH
Q 003918 220 LLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIM 299 (786)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 299 (786)
|+ ...+..+...+...|..+.+.+++..+++.....
T Consensus 222 -------------------------p~--~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~----------------- 257 (697)
T PLN03081 222 -------------------------AE--PRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVG----------------- 257 (697)
T ss_pred -------------------------CC--hhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCc-----------------
Confidence 00 2234444555556666666666665554321100
Q ss_pred HHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhHhcccccCccchHHHHHHHHHhhhhhchhhhhhhhhh
Q 003918 300 VSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLR 379 (786)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 379 (786)
T Consensus 258 -------------------------------------------------------------------------------- 257 (697)
T PLN03081 258 -------------------------------------------------------------------------------- 257 (697)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCHHHHHHHHHhh--cCCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhc--cCC
Q 003918 380 QNPHNVEQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQV--NYK 455 (786)
Q Consensus 380 ~~p~~~~~~~~~~~~~--~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~ 455 (786)
+..++..++..+ .|+.++|.++|+... + .++..|..++..|.+.|++++|..+|+++... .|+
T Consensus 258 ----d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~-----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 258 ----DTFVSCALIDMYSKCGDIEDARCVFDGMP----E-----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred ----cceeHHHHHHHHHHCCCHHHHHHHHHhCC----C-----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 111122222333 277888888888642 2 46789999999999999999999999998763 343
Q ss_pred ChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHH
Q 003918 456 TVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTR 535 (786)
Q Consensus 456 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 535 (786)
. ..+..+...+.+.|++++|.+++..+++.... .+...+..+++.|.+.|++++|.
T Consensus 325 ~-----~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~-------------------~d~~~~~~Li~~y~k~G~~~~A~ 380 (697)
T PLN03081 325 Q-----FTFSIMIRIFSRLALLEHAKQAHAGLIRTGFP-------------------LDIVANTALVDLYSKWGRMEDAR 380 (697)
T ss_pred H-----HHHHHHHHHHHhccchHHHHHHHHHHHHhCCC-------------------CCeeehHHHHHHHHHCCCHHHHH
Confidence 3 56788888889999999999999999865320 36678889999999999999999
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 003918 536 AVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAV 615 (786)
Q Consensus 536 ~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 615 (786)
.+|+++.+ .+...|+.++..|.+.|+.++|+++|+++.+..-.|+ ...+..++..+. ..|..++|.++|+.+.
T Consensus 381 ~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~---~~g~~~~a~~~f~~m~ 453 (697)
T PLN03081 381 NVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN-HVTFLAVLSACR---YSGLSEQGWEIFQSMS 453 (697)
T ss_pred HHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHh---cCCcHHHHHHHHHHHH
Confidence 99998865 4678899999999999999999999999988643455 444665554443 5689999999999998
Q ss_pred hhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChh
Q 003918 616 ETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKD 695 (786)
Q Consensus 616 ~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~ 695 (786)
+..+-.++...|..++.++.+.|++++|.+++++ .|..|....|..++..+...|+.+.|+.++++.+.. .|++
T Consensus 454 ~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~----~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~-~p~~- 527 (697)
T PLN03081 454 ENHRIKPRAMHYACMIELLGREGLLDEAYAMIRR----APFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM-GPEK- 527 (697)
T ss_pred HhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHH----CCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC-CCCC-
Confidence 7543333467889999999999999999999876 355567778999998888999999999999999998 7874
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHcc
Q 003918 696 VKAMCLKYAELEKSLGEIDRARGIYVFASQF 726 (786)
Q Consensus 696 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 726 (786)
...|..++++|.+.|++++|.++++.+.+.
T Consensus 528 -~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 528 -LNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred -CcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 447888899999999999999999998876
No 27
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.93 E-value=5.6e-20 Score=196.05 Aligned_cols=618 Identities=13% Similarity=0.117 Sum_probs=352.7
Q ss_pred hHhHHHHhhCCCChHhHHHHHH-HHHcCChhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHH
Q 003918 14 LLYEEELLRNPFSLKLWWRYLV-AKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFE 92 (786)
Q Consensus 14 ~~~~~~l~~~p~~~~~w~~~~~-~~~~~~~~~~~~~~~~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 92 (786)
-++..+|.++|.++.+|..+.. ++++|+.+++....-.|--.+|+|.+.|..++..-.+. |++.+|+-.|.
T Consensus 160 ~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~--------~~i~qA~~cy~ 231 (895)
T KOG2076|consen 160 EILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQL--------GNINQARYCYS 231 (895)
T ss_pred HHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhc--------ccHHHHHHHHH
Confidence 3455566666666666666644 45566666666666666666666666666666665543 66666666666
Q ss_pred HHHHhcCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhCCCCc---chhhHHHHHHHHHhcCCChHHHHHHHHHHHccC
Q 003918 93 RALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQ---HDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYD 169 (786)
Q Consensus 93 ~al~~~p~~~~~w~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~w~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 169 (786)
+|++..|.+.......+.++.+.|+...|...|.++++.+|..+ ...+-..+++.+...+.. +.|.+.++.++...
T Consensus 232 rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~-e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 232 RAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNER-ERAAKALEGALSKE 310 (895)
T ss_pred HHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHhhc
Confidence 66666666666666666666666666666666666666666211 111112233444444555 66666666666521
Q ss_pred CC-----CHHHHHHHHHhcCCHHHHHHHHHHHhcCCC-------------------ccccCC--CcchHH-HHHHHHHHh
Q 003918 170 PS-----HIEDFIEFLVKSKLWQEAAERLASVLNDDQ-------------------FYSIKG--KTKHRL-WLELCDLLT 222 (786)
Q Consensus 170 p~-----~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~-------------------~~~~~~--~~~~~~-~~~~~~~~~ 222 (786)
.+ +.+.++.+++....++.|............ +..... +....+ ...++-...
T Consensus 311 ~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L 390 (895)
T KOG2076|consen 311 KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHL 390 (895)
T ss_pred cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcc
Confidence 11 113344566666666666655544432000 000000 000000 000000000
Q ss_pred cccccccCCcHHHHHHhhhhcc--CchhHHHHHHHHHHHHhhccHHHHHHHHHHHhhccCchhcHHHHHHHHHHHHHHHH
Q 003918 223 THATEISGLNVDAIIRGGIRKF--TDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMV 300 (786)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~--p~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 300 (786)
+.. ...+.++....... |.+.++++..++..|...|++.+|+..|..++...+.
T Consensus 391 ~~~-----e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~------------------- 446 (895)
T KOG2076|consen 391 KER-----ELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGY------------------- 446 (895)
T ss_pred ccc-----chHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccc-------------------
Confidence 000 01111222222211 3333445555555555555555555555544432211
Q ss_pred HHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhHhcccccCccchHHHHHHHHHhhhhhchhhhhhhhhhc
Q 003918 301 SAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQ 380 (786)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 380 (786)
T Consensus 447 -------------------------------------------------------------------------------- 446 (895)
T KOG2076|consen 447 -------------------------------------------------------------------------------- 446 (895)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCHHHHHHHHHhhc--CCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChh
Q 003918 381 NPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVD 458 (786)
Q Consensus 381 ~p~~~~~~~~~~~~~~--~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~ 458 (786)
.+..+|+..|..+. |.+++|+..|+++|. ..| .+.++...++.++.+.|++++|.++++.....++.+.+
T Consensus 447 --~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~-~~p-----~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e 518 (895)
T KOG2076|consen 447 --QNAFVWYKLARCYMELGEYEEAIEFYEKVLI-LAP-----DNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAE 518 (895)
T ss_pred --cchhhhHHHHHHHHHHhhHHHHHHHHHHHHh-cCC-----CchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchh
Confidence 12446777777664 778899999999984 566 67888899999999999999999998887744433322
Q ss_pred hH-----HHHHHHHHHHHHhccCHHHHHHHHHHHhc-------CCchHHhhh--------------------------hh
Q 003918 459 HL-----ASIWCEWAEMELRHKNFKGALELMRRATA-------EPSVEVRRR--------------------------VA 500 (786)
Q Consensus 459 ~~-----~~~~~~~a~~~~~~g~~~~A~~~~~~al~-------~~~~~~~~~--------------------------~~ 500 (786)
.. ..+......++.+.|+.++=+.+-..++. ..|...+++ .+
T Consensus 519 ~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 598 (895)
T KOG2076|consen 519 ACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATD 598 (895)
T ss_pred hccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCc
Confidence 11 13445556666777776654443332222 112110000 00
Q ss_pred ---ccCC--hhHHH---Hh-hhcH----HHHHHHHHHHHHcCChHHHHHHHHHHHhhcc--CCHH----HHHHHHHHHHH
Q 003918 501 ---ADGN--EPVQM---KL-HKSL----RLWTFYVDLEESLGNLESTRAVYERILDLRI--ATPQ----IIINYALLLEE 561 (786)
Q Consensus 501 ---~~~~--~~~~~---~~-~~~~----~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p--~~~~----~~~~~~~~~~~ 561 (786)
.+.+ ..... .. .-+. +++..++....+.+.+++|..+...+++..- .++. +-.....+-..
T Consensus 599 ~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~ 678 (895)
T KOG2076|consen 599 DNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLY 678 (895)
T ss_pred hHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHh
Confidence 0000 00000 00 0122 3445555667788999999999999988621 2222 22223344566
Q ss_pred cccHHHHHHHHHHHHhhc---CCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcC
Q 003918 562 HKYFEDAFRVYERGVKIF---KYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYG 638 (786)
Q Consensus 562 ~g~~~~A~~~~~~al~~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g 638 (786)
.+++..|.+.++-.+..+ .+|....+|+.+...+... ++-.--...+.++....|++ +..+...+|.....++
T Consensus 679 ~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~---~q~v~~~R~~~~~~~~~~~~-~~~l~~i~gh~~~~~~ 754 (895)
T KOG2076|consen 679 ARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKY---GQRVCYLRLIMRLLVKNKDD-TPPLALIYGHNLFVNA 754 (895)
T ss_pred cCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhccCccC-CcceeeeechhHhhcc
Confidence 789999999998888752 2466677888544333322 33333444555566666663 3667788899999999
Q ss_pred CHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHh--------cChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHc
Q 003918 639 LAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEI--------FGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSL 710 (786)
Q Consensus 639 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~--------~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~ 710 (786)
.+.-|...|-++...+|++|-+-+..+........ -..-++.....+..+. ........+.+++|.++...
T Consensus 755 s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~l-R~~~~~QEa~YNigRayh~~ 833 (895)
T KOG2076|consen 755 SFKHALQEYMRAFRQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKEL-RRCEEKQEAFYNIGRAYHQI 833 (895)
T ss_pred chHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHc
Confidence 99999999999999999988776555544332222 2234566666666555 32323567999999999999
Q ss_pred CChHHHHHHHHHHHccCCCC-----CC-----HHHHHHHHHHHHHcCCHHHHHHHHH
Q 003918 711 GEIDRARGIYVFASQFADPR-----SD-----TEFWNRWHEFEVNHGNEDTFREMLR 757 (786)
Q Consensus 711 g~~~~A~~~~~~al~~~~p~-----~~-----~~~~~~~~~~~~~~G~~~~a~~~~~ 757 (786)
|-..-|..+|++++...+++ .+ -..--.+.-.|.+.||..-|.+++.
T Consensus 834 gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~ 890 (895)
T KOG2076|consen 834 GLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILE 890 (895)
T ss_pred ccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHH
Confidence 99999999999999973121 11 1222224445888899999999983
No 28
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.93 E-value=2.3e-22 Score=226.97 Aligned_cols=315 Identities=10% Similarity=-0.006 Sum_probs=179.3
Q ss_pred hhhhhhhhcCCCCHHHHHHHHHhh--cCCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 003918 372 LANSVLLRQNPHNVEQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKA 449 (786)
Q Consensus 372 ~~~~~~l~~~p~~~~~~~~~~~~~--~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 449 (786)
.+...++..+|.+..++..++... .|++++|+..|++++ ..+| .++.+|..+|..+...|++++|+..|+++
T Consensus 63 ~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l-~~~P-----~~~~a~~~la~~l~~~g~~~~Ai~~l~~A 136 (656)
T PRK15174 63 TLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLL-AVNV-----CQPEDVLLVASVLLKSKQYATVADLAEQA 136 (656)
T ss_pred HHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHH-HhCC-----CChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333444556666666665554333 266666666666666 3444 45566666666666666666666666666
Q ss_pred HhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcC
Q 003918 450 VQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLG 529 (786)
Q Consensus 450 l~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 529 (786)
+..+|+++ .+|..++.++...|++++|...+++++...| +++..+...+ .+...|
T Consensus 137 l~l~P~~~----~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P--------------------~~~~a~~~~~-~l~~~g 191 (656)
T PRK15174 137 WLAFSGNS----QIFALHLRTLVLMDKELQAISLARTQAQEVP--------------------PRGDMIATCL-SFLNKS 191 (656)
T ss_pred HHhCCCcH----HHHHHHHHHHHHCCChHHHHHHHHHHHHhCC--------------------CCHHHHHHHH-HHHHcC
Confidence 66666665 5666666666666666666666666655555 3344443332 244556
Q ss_pred ChHHHHHHHHHHHhhccCC-HHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHH--
Q 003918 530 NLESTRAVYERILDLRIAT-PQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLER-- 606 (786)
Q Consensus 530 ~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-- 606 (786)
++++|...+++++...|.. ...+...+..+...|++++|+..+++++.. .|+++.++..++..+. ..|++++
T Consensus 192 ~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~---~~G~~~eA~ 266 (656)
T PRK15174 192 RLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYY---QSGRSREAK 266 (656)
T ss_pred CHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH---HcCCchhhH
Confidence 6666666666666654422 223334455556666666666666666664 4666665555443333 2244543
Q ss_pred --HHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHH
Q 003918 607 --ARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYE 684 (786)
Q Consensus 607 --A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 684 (786)
|...|+++++..|+ +..++..+|.++...|++++|...++++++..|+++...... ...+.+.|++++|+..|+
T Consensus 267 ~~A~~~~~~Al~l~P~--~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~L--a~~l~~~G~~~eA~~~l~ 342 (656)
T PRK15174 267 LQAAEHWRHALQFNSD--NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMY--ARALRQVGQYTAASDEFV 342 (656)
T ss_pred HHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH--HHHHHHCCCHHHHHHHHH
Confidence 56666666666665 456666666666666666666666666666666544433332 223345566666666666
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCC
Q 003918 685 QAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPR 730 (786)
Q Consensus 685 ~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~ 730 (786)
+++.. .|.. ...+...+.++...|++++|...|+++++. +|+
T Consensus 343 ~al~~-~P~~--~~~~~~~a~al~~~G~~deA~~~l~~al~~-~P~ 384 (656)
T PRK15174 343 QLARE-KGVT--SKWNRYAAAALLQAGKTSEAESVFEHYIQA-RAS 384 (656)
T ss_pred HHHHh-Cccc--hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-Chh
Confidence 66665 5552 233444455566666666666666666665 444
No 29
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.93 E-value=2.8e-20 Score=215.73 Aligned_cols=339 Identities=12% Similarity=0.056 Sum_probs=225.1
Q ss_pred CCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhc--cCCChhhHHHHHHHHHHHHHhc
Q 003918 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQV--NYKTVDHLASIWCEWAEMELRH 474 (786)
Q Consensus 397 ~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~a~~~~~~ 474 (786)
|+.++|.++|++..+. . +..+...|..+...|.+.|++++|..+|+++... .|+. ..|..+...+.+.
T Consensus 486 G~vd~A~~vf~eM~~~-G----v~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~-----vTYnsLI~a~~k~ 555 (1060)
T PLN03218 486 GKVDAMFEVFHEMVNA-G----VEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDR-----VVFNALISACGQS 555 (1060)
T ss_pred cCHHHHHHHHHHHHHc-C----CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHHC
Confidence 5667777777776632 1 1125677777777777777777777777777653 3432 5677777777777
Q ss_pred cCHHHHHHHHHHHhc----CCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhc-cCCH
Q 003918 475 KNFKGALELMRRATA----EPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLR-IATP 549 (786)
Q Consensus 475 g~~~~A~~~~~~al~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~ 549 (786)
|++++|.++|.++.. +.| +...|..++..+.+.|++++|.++|+++.+.+ +.++
T Consensus 556 G~~deA~~lf~eM~~~~~gi~P---------------------D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~ 614 (1060)
T PLN03218 556 GAVDRAFDVLAEMKAETHPIDP---------------------DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTP 614 (1060)
T ss_pred CCHHHHHHHHHHHHHhcCCCCC---------------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCh
Confidence 777777777777754 233 45666777777777777777777777777764 4456
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHH
Q 003918 550 QIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQ 629 (786)
Q Consensus 550 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 629 (786)
..|..++..|.+.|++++|+++|+++.+..-.|+ ...|..++..+. ..|++++|.++|+.+.+..... +...|..
T Consensus 615 ~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~---k~G~~eeA~~l~~eM~k~G~~p-d~~tyns 689 (1060)
T PLN03218 615 EVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAG---HAGDLDKAFEILQDARKQGIKL-GTVSYSS 689 (1060)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH---hCCCHHHHHHHHHHHHHcCCCC-CHHHHHH
Confidence 7777777777777777777777777776532343 445655554443 3467777777777777754221 4567777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Q 003918 630 YAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKS 709 (786)
Q Consensus 630 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~ 709 (786)
++..+.+.|++++|..+|+.+.+... .|+...|..++..+.+.|++++|.++|+++...|... +...|..+...+.+
T Consensus 690 LI~ay~k~G~~eeA~~lf~eM~~~g~-~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P--d~~Ty~sLL~a~~k 766 (1060)
T PLN03218 690 LMGACSNAKNWKKALELYEDIKSIKL-RPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP--NTITYSILLVASER 766 (1060)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHH
Confidence 77777777777777777777665322 3456667777777777777777777777776653222 24466666777777
Q ss_pred cCChHHHHHHHHHHHccCCCCCCHHHHHHHHHHHH----Hc-------------------CCHHHHHHHHHHHHHHHhhh
Q 003918 710 LGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEV----NH-------------------GNEDTFREMLRIKRSVSASY 766 (786)
Q Consensus 710 ~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~----~~-------------------G~~~~a~~~~~~~~~~~~~~ 766 (786)
.|+++.|..+|..+++.. ...+...+..++.+.. +. +..+.|..+++.|...+-.|
T Consensus 767 ~G~le~A~~l~~~M~k~G-i~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~P 845 (1060)
T PLN03218 767 KDDADVGLDLLSQAKEDG-IKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLP 845 (1060)
T ss_pred CCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCC
Confidence 777777777777777652 2223555555554422 11 12356888888888888888
Q ss_pred hhhHHHHHh
Q 003918 767 SQVIYFSFL 775 (786)
Q Consensus 767 ~~~~~~~~~ 775 (786)
+.++|....
T Consensus 846 d~~T~~~vL 854 (1060)
T PLN03218 846 TMEVLSQVL 854 (1060)
T ss_pred CHHHHHHHH
Confidence 888886443
No 30
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.92 E-value=2e-20 Score=187.91 Aligned_cols=220 Identities=19% Similarity=0.272 Sum_probs=180.1
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHccc--------------HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHH
Q 003918 533 STRAVYERILDLRIATPQIIINYALLLEEHKY--------------FEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKR 598 (786)
Q Consensus 533 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~--------------~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~ 598 (786)
+..-+|++++...+-+|++|+.++.+....++ .+++.++|++++... .-.+..++..+.+.-..+
T Consensus 263 Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l-~~~~~~Ly~~~a~~eE~~ 341 (656)
T KOG1914|consen 263 RVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGL-LKENKLLYFALADYEESR 341 (656)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhHHHh
Confidence 34557889999999999999999888888777 789999999999873 345666777766655555
Q ss_pred hCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhH
Q 003918 599 YGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPK 678 (786)
Q Consensus 599 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~ 678 (786)
++.++.+....++++.+.....+. ..+|+.+..+-.+...++.|+.+|.++-+.--..-.+.+..++++++ ..++..-
T Consensus 342 ~~~n~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~-cskD~~~ 419 (656)
T KOG1914|consen 342 YDDNKEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY-CSKDKET 419 (656)
T ss_pred cccchhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH-hcCChhH
Confidence 554568889999999988755433 46889999999999999999999999876433333667777777764 4689999
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHcc-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003918 679 TREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQF-ADPRSDTEFWNRWHEFEVNHGNEDTFREMLR 757 (786)
Q Consensus 679 A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-~~p~~~~~~~~~~~~~~~~~G~~~~a~~~~~ 757 (786)
|..+|+-.++. .++ ++..-+.|..++...|+-..|+.+|++++.. .+++-..+.|..|+.++...||++.+.++-+
T Consensus 420 AfrIFeLGLkk-f~d--~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lek 496 (656)
T KOG1914|consen 420 AFRIFELGLKK-FGD--SPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEK 496 (656)
T ss_pred HHHHHHHHHHh-cCC--ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 99999999999 888 6778899999999999999999999999986 3555567999999999999999999999885
Q ss_pred H
Q 003918 758 I 758 (786)
Q Consensus 758 ~ 758 (786)
.
T Consensus 497 R 497 (656)
T KOG1914|consen 497 R 497 (656)
T ss_pred H
Confidence 3
No 31
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=9.2e-21 Score=188.04 Aligned_cols=226 Identities=15% Similarity=0.267 Sum_probs=198.2
Q ss_pred hcCCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhc
Q 003918 395 FEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRH 474 (786)
Q Consensus 395 ~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~ 474 (786)
+.|+...|...|..+| .++| ..+.+|+.++.+|...++..+-.+.|.++.+++|.++ ++|...+++..-.
T Consensus 338 L~g~~~~a~~d~~~~I-~l~~-----~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~----dvYyHRgQm~flL 407 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAI-KLDP-----AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENP----DVYYHRGQMRFLL 407 (606)
T ss_pred hcCCchhhhhhHHHHH-hcCc-----ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCC----chhHhHHHHHHHH
Confidence 3588999999999999 5777 5667799999999999999999999999999999998 9999999999999
Q ss_pred cCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHH
Q 003918 475 KNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIIN 554 (786)
Q Consensus 475 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 554 (786)
+++++|..-|++++++.| .+.-.+..++-...+++.++++...|+.+.+..|++|+++..
T Consensus 408 ~q~e~A~aDF~Kai~L~p--------------------e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~ 467 (606)
T KOG0547|consen 408 QQYEEAIADFQKAISLDP--------------------ENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNL 467 (606)
T ss_pred HHHHHHHHHHHHHhhcCh--------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHH
Confidence 999999999999999999 677777888888889999999999999999999999999999
Q ss_pred HHHHHHHcccHHHHHHHHHHHHhhcCCCC------hHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHH
Q 003918 555 YALLLEEHKYFEDAFRVYERGVKIFKYPH------VKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYL 628 (786)
Q Consensus 555 ~~~~~~~~g~~~~A~~~~~~al~~~~~p~------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 628 (786)
++.++..+++|+.|++.|++++++ .|. ++..+..-+..+. + -.+++..|..++.++++.+|. +...+.
T Consensus 468 fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~plV~Ka~l~~-q-wk~d~~~a~~Ll~KA~e~Dpk--ce~A~~ 541 (606)
T KOG0547|consen 468 FAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIVNAAPLVHKALLVL-Q-WKEDINQAENLLRKAIELDPK--CEQAYE 541 (606)
T ss_pred HHHHHhhHHhHHHHHHHHHHHHhh--ccccccccccchhhhhhhHhhh-c-hhhhHHHHHHHHHHHHccCch--HHHHHH
Confidence 999999999999999999999998 466 3333332221121 1 236899999999999999999 889999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 003918 629 QYAKLEEDYGLAKRAMKVYDQATKAVPN 656 (786)
Q Consensus 629 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~ 656 (786)
.+|.++.+.|+.++|+++|++++.....
T Consensus 542 tlaq~~lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 542 TLAQFELQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998876544
No 32
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.9e-20 Score=185.83 Aligned_cols=234 Identities=16% Similarity=0.192 Sum_probs=207.0
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003918 462 SIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERI 541 (786)
Q Consensus 462 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 541 (786)
.....-+.++.-.|+...|..-|+.+|++.| ....+|..++.+|....+..+-.+.|.+|
T Consensus 327 ~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~--------------------~~~~lyI~~a~~y~d~~~~~~~~~~F~~A 386 (606)
T KOG0547|consen 327 EALLLRGTFHFLKGDSLGAQEDFDAAIKLDP--------------------AFNSLYIKRAAAYADENQSEKMWKDFNKA 386 (606)
T ss_pred HHHHHhhhhhhhcCCchhhhhhHHHHHhcCc--------------------ccchHHHHHHHHHhhhhccHHHHHHHHHH
Confidence 4455567777788999999999999999999 56677888999999999999999999999
Q ss_pred HhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCcc
Q 003918 542 LDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPAD 621 (786)
Q Consensus 542 l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 621 (786)
..++|.+|++|+..|.++.-.+++++|+.-|++++.+ +|++...+.+.+..++ +.+.+++++..|+.++...|.
T Consensus 387 ~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~pe~~~~~iQl~~a~Y---r~~k~~~~m~~Fee~kkkFP~- 460 (606)
T KOG0547|consen 387 EDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DPENAYAYIQLCCALY---RQHKIAESMKTFEEAKKKFPN- 460 (606)
T ss_pred HhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--ChhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhCCC-
Confidence 9999999999999999999999999999999999998 7999888877655444 446899999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------CchhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChh
Q 003918 622 AVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPN------HEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKD 695 (786)
Q Consensus 622 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~ 695 (786)
+++++..+|.++..++++++|.+.|..++...|. ++...+..+.+....+ ++++.|..++++|++. +|.
T Consensus 461 -~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~-Dpk-- 535 (606)
T KOG0547|consen 461 -CPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIEL-DPK-- 535 (606)
T ss_pred -CchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHcc-Cch--
Confidence 8999999999999999999999999999999998 4444444444443333 8999999999999999 888
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHcc
Q 003918 696 VKAMCLKYAELEKSLGEIDRARGIYVFASQF 726 (786)
Q Consensus 696 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 726 (786)
+-.++..+|+++.++|++++|+++|++++..
T Consensus 536 ce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 536 CEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 7779999999999999999999999999886
No 33
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=6.2e-19 Score=174.20 Aligned_cols=200 Identities=19% Similarity=0.200 Sum_probs=174.5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhcc
Q 003918 423 HTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAAD 502 (786)
Q Consensus 423 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 502 (786)
+.....+|.+|.-.++.++|+.+|+++++++|... .+|..+|.-+...++...|+..|++|++++|
T Consensus 330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~----~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p---------- 395 (559)
T KOG1155|consen 330 PETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYL----SAWTLMGHEYVEMKNTHAAIESYRRAVDINP---------- 395 (559)
T ss_pred ccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchh----HHHHHhhHHHHHhcccHHHHHHHHHHHhcCc----------
Confidence 45667788899999999999999999999999987 9999999999999999999999999999999
Q ss_pred CChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCC
Q 003918 503 GNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYP 582 (786)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p 582 (786)
.+-++|+.+|+.|..++...-|+-.|++|++..|+|+.+|..+|.+|.+.++.++|+++|++++... .
T Consensus 396 ----------~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~--d 463 (559)
T KOG1155|consen 396 ----------RDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG--D 463 (559)
T ss_pred ----------hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc--c
Confidence 7889999999999999999999999999999999999999999999999999999999999999972 3
Q ss_pred ChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhh-------CCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 003918 583 HVKDIWVTYLSKFVKRYGKTKLERARELFENAVET-------APADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKA 653 (786)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 653 (786)
.+..++..+ +.+++.+ ++.++|..+|++.++. .|. ...+..-++..+.+.+++++|..+..+++..
T Consensus 464 te~~~l~~L-akLye~l--~d~~eAa~~yek~v~~~~~eg~~~~~--t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 464 TEGSALVRL-AKLYEEL--KDLNEAAQYYEKYVEVSELEGEIDDE--TIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred cchHHHHHH-HHHHHHH--HhHHHHHHHHHHHHHHHHhhcccchH--HHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 344555543 4566554 6799999999999994 333 3455566888999999999998887777764
No 34
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=1.4e-19 Score=195.02 Aligned_cols=301 Identities=14% Similarity=0.122 Sum_probs=236.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCC
Q 003918 425 LWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGN 504 (786)
Q Consensus 425 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 504 (786)
..+..|..+...|++++|...|++++..+|+++ .++..++.++...|++++|..++++++..++...
T Consensus 37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~--------- 103 (389)
T PRK11788 37 RDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETV----ELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTR--------- 103 (389)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCcccH----HHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCH---------
Confidence 334556677788999999999999999999887 8889999999999999999999999987654100
Q ss_pred hhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCCh
Q 003918 505 EPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHV 584 (786)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~ 584 (786)
......+..++.++...|++++|..+|+++++..|.+..++..++.++...|++++|++.++++++.. |.+
T Consensus 104 -------~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~ 174 (389)
T PRK11788 104 -------EQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG--GDS 174 (389)
T ss_pred -------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc--CCc
Confidence 01235678888899999999999999999999888888999999999999999999999999998863 433
Q ss_pred HH-----HHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Q 003918 585 KD-----IWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEK 659 (786)
Q Consensus 585 ~~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 659 (786)
.. .+...+..+ ...|++++|...|+++++..|+ +...+..++.++...|++++|..+|++++...|.+.
T Consensus 175 ~~~~~~~~~~~la~~~---~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~- 248 (389)
T PRK11788 175 LRVEIAHFYCELAQQA---LARGDLDAARALLKKALAADPQ--CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYL- 248 (389)
T ss_pred chHHHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHhHCcC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH-
Confidence 21 222222222 2458899999999999999988 677888999999999999999999999998877532
Q ss_pred hhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCCCHHHHHHH
Q 003918 660 LGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRW 739 (786)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~ 739 (786)
...+...+..+...|++++|...+++++.. .|+. ..+..++.++.+.|++++|..+|+++++. .|+ +. .+..+
T Consensus 249 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-~p~~---~~~~~la~~~~~~g~~~~A~~~l~~~l~~-~P~-~~-~~~~l 321 (389)
T PRK11788 249 SEVLPKLMECYQALGDEAEGLEFLRRALEE-YPGA---DLLLALAQLLEEQEGPEAAQALLREQLRR-HPS-LR-GFHRL 321 (389)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCc---hHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CcC-HH-HHHHH
Confidence 233444555566789999999999999998 7873 24578899999999999999999999987 687 23 45544
Q ss_pred HHHHHH---cCCHHHHHHHHHHHH
Q 003918 740 HEFEVN---HGNEDTFREMLRIKR 760 (786)
Q Consensus 740 ~~~~~~---~G~~~~a~~~~~~~~ 760 (786)
...... .|+..++..+++.+.
T Consensus 322 ~~~~~~~~~~g~~~~a~~~~~~~~ 345 (389)
T PRK11788 322 LDYHLAEAEEGRAKESLLLLRDLV 345 (389)
T ss_pred HHHhhhccCCccchhHHHHHHHHH
Confidence 544443 568888888887333
No 35
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=4.5e-19 Score=191.16 Aligned_cols=296 Identities=13% Similarity=0.105 Sum_probs=242.2
Q ss_pred HHHhhcCCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHH
Q 003918 391 RVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEM 470 (786)
Q Consensus 391 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~ 470 (786)
......|++++|+..|.+++. .+| .++.++..+|.++...|++++|..++++++...+.........+..++..
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~-~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~ 116 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLK-VDP-----ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQD 116 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHh-cCc-----ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 333445899999999999995 666 67889999999999999999999999999985433322223578888999
Q ss_pred HHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHH
Q 003918 471 ELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQ 550 (786)
Q Consensus 471 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 550 (786)
+...|++++|..+|++++...| .+...+..++.++...|++++|+..|+++++..|.+..
T Consensus 117 ~~~~g~~~~A~~~~~~~l~~~~--------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 176 (389)
T PRK11788 117 YLKAGLLDRAEELFLQLVDEGD--------------------FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLR 176 (389)
T ss_pred HHHCCCHHHHHHHHHHHHcCCc--------------------chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcch
Confidence 9999999999999999999877 56788889999999999999999999999998776532
Q ss_pred -----HHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHH
Q 003918 551 -----IIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKP 625 (786)
Q Consensus 551 -----~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 625 (786)
.+..++..+...|++++|+..|+++++. +|.+...+..++..+. ..|++++|...|+++++..|.. ...
T Consensus 177 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~~~~~~p~~-~~~ 250 (389)
T PRK11788 177 VEIAHFYCELAQQALARGDLDAARALLKKALAA--DPQCVRASILLGDLAL---AQGDYAAAIEALERVEEQDPEY-LSE 250 (389)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--CcCCHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHChhh-HHH
Confidence 5667889999999999999999999997 6888888877655444 4589999999999999998863 245
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChhHHHHHHHHHH
Q 003918 626 LYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAE 705 (786)
Q Consensus 626 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~ 705 (786)
++..++.++...|++++|...++++++..|+... ....+..+.+.|++++|+.+++++++. .|+. . .+..+..
T Consensus 251 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~---~~~la~~~~~~g~~~~A~~~l~~~l~~-~P~~--~-~~~~l~~ 323 (389)
T PRK11788 251 VLPKLMECYQALGDEAEGLEFLRRALEEYPGADL---LLALAQLLEEQEGPEAAQALLREQLRR-HPSL--R-GFHRLLD 323 (389)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH---HHHHHHHHHHhCCHHHHHHHHHHHHHh-CcCH--H-HHHHHHH
Confidence 6788999999999999999999999999886532 244555567889999999999999999 8984 3 3333333
Q ss_pred HHH---HcCChHHHHHHHHHHHc
Q 003918 706 LEK---SLGEIDRARGIYVFASQ 725 (786)
Q Consensus 706 ~~~---~~g~~~~A~~~~~~al~ 725 (786)
... ..|+.++|..++++.++
T Consensus 324 ~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 324 YHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HhhhccCCccchhHHHHHHHHHH
Confidence 332 25688899888888775
No 36
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.87 E-value=1.4e-16 Score=170.33 Aligned_cols=595 Identities=13% Similarity=0.097 Sum_probs=355.9
Q ss_pred cCChhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcH
Q 003918 39 EAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFI 118 (786)
Q Consensus 39 ~~~~~~~~~~~~~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~ 118 (786)
+|++++|..++...++++|.....|..++.....+ |+.+++...+-.|--..|++.+.|..++....++|++
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqr--------Gd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQR--------GDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHc--------ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccH
Confidence 69999999999999999999999999999988765 8999999888888888999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCcchhhHHHHHHHHHhcCCChHHHHHHHHHHHccCCCCH----H----HHHHHHHhcCCHHHHH
Q 003918 119 TKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHI----E----DFIEFLVKSKLWQEAA 190 (786)
Q Consensus 119 ~~A~~~~~~al~~~p~~~~~~~w~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~----~----~~~~~~~~~g~~~~A~ 190 (786)
+.|+-+|.+|++.+|.+ -.+......++.++|+. ..|...|.++++.+|... . ..++.+...++-+.|.
T Consensus 224 ~qA~~cy~rAI~~~p~n--~~~~~ers~L~~~~G~~-~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~ 300 (895)
T KOG2076|consen 224 NQARYCYSRAIQANPSN--WELIYERSSLYQKTGDL-KRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAA 300 (895)
T ss_pred HHHHHHHHHHHhcCCcc--hHHHHHHHHHHHHhChH-HHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 99999999999999976 45555667888899999 999999999999998322 2 2346677777779999
Q ss_pred HHHHHHhcCCCccccCCCcchHHHHHHHHHHhcccccccCCcHHHHHHhhh--hccCchhHHHHHHHHHHHHhhccHHHH
Q 003918 191 ERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGI--RKFTDEVGRLWTSLADYYIRRELFEKA 268 (786)
Q Consensus 191 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~~~~~~~la~~y~~~g~~~~A 268 (786)
+.++..+.... +.........++.++........ +...+.... ..-+++ .+ |- ..+=
T Consensus 301 ~~le~~~s~~~-----~~~~~ed~ni~ael~l~~~q~d~---~~~~i~~~~~r~~e~d~-~e-~~-----------~~~~ 359 (895)
T KOG2076|consen 301 KALEGALSKEK-----DEASLEDLNILAELFLKNKQSDK---ALMKIVDDRNRESEKDD-SE-WD-----------TDER 359 (895)
T ss_pred HHHHHHHhhcc-----ccccccHHHHHHHHHHHhHHHHH---hhHHHHHHhccccCCCh-hh-hh-----------hhhh
Confidence 99998886211 11111122233333332221110 100111110 011111 10 10 0000
Q ss_pred HHHHHHHhhccCchhcH-HHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhHhccc
Q 003918 269 RDIFEEGMMTVVTVRDF-SVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGF 347 (786)
Q Consensus 269 ~~~~~~al~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (786)
......++-..|+.... ..+....+.+. .+...
T Consensus 360 ~~~~~~~~~~~~~~~s~~l~v~rl~icL~---------~L~~~------------------------------------- 393 (895)
T KOG2076|consen 360 RREEPNALCEVGKELSYDLRVIRLMICLV---------HLKER------------------------------------- 393 (895)
T ss_pred ccccccccccCCCCCCccchhHhHhhhhh---------ccccc-------------------------------------
Confidence 11112222223332110 01111111100 00000
Q ss_pred ccCccchHHHHHHHHHhhhhhchhhhhhhhhhcC---CCCHHHHHHHHHhhc--CCchhHHHHHHHHHhccCCCccCCCc
Q 003918 348 WLHDVKDVDLRLARLEHLMNRRPELANSVLLRQN---PHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKP 422 (786)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---p~~~~~~~~~~~~~~--~~~~~a~~~~~~al~~~~~~~~~~~~ 422 (786)
.....+.++ +...+ ...++.++..+..+. |++.+|+.+|..++. .++ .++
T Consensus 394 ------e~~e~ll~~--------------l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~-~~~----~~~ 448 (895)
T KOG2076|consen 394 ------ELLEALLHF--------------LVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITN-REG----YQN 448 (895)
T ss_pred ------chHHHHHHH--------------HHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc-Ccc----ccc
Confidence 000000000 11112 234566677777774 899999999999884 333 256
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhcc
Q 003918 423 HTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAAD 502 (786)
Q Consensus 423 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 502 (786)
..+|..+|.+|...|.+++|+..|++++...|++. ++-..++.++.+.|+.++|.+.+.+....++... +...+.
T Consensus 449 ~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~----D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~-e~~a~~ 523 (895)
T KOG2076|consen 449 AFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNL----DARITLASLYQQLGNHEKALETLEQIINPDGRNA-EACAWE 523 (895)
T ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCch----hhhhhHHHHHHhcCCHHHHHHHHhcccCCCccch-hhcccc
Confidence 88999999999999999999999999999999998 8999999999999999999999998774443111 000000
Q ss_pred CChhHHHHhhhcHHHHHHHHHHHHHcCChHH----------------------------------------HHHHHHHHH
Q 003918 503 GNEPVQMKLHKSLRLWTFYVDLEESLGNLES----------------------------------------TRAVYERIL 542 (786)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----------------------------------------A~~~~~~al 542 (786)
....+...+.+++...|+.++ -.....+++
T Consensus 524 ----------~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~ 593 (895)
T KOG2076|consen 524 ----------PERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAR 593 (895)
T ss_pred ----------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHH
Confidence 000111111111111111111 000111111
Q ss_pred h----------------------hccCCHHHHHH----HHHHHHHcccHHHHHHHHHHHHhhcC--CCChHHHHHHHHHH
Q 003918 543 D----------------------LRIATPQIIIN----YALLLEEHKYFEDAFRVYERGVKIFK--YPHVKDIWVTYLSK 594 (786)
Q Consensus 543 ~----------------------~~p~~~~~~~~----~~~~~~~~g~~~~A~~~~~~al~~~~--~p~~~~~~~~~~~~ 594 (786)
. ...-..+-|+. +...+.+.|.+++|..+...++.... .+....=-+.++..
T Consensus 594 ~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l 673 (895)
T KOG2076|consen 594 EKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGL 673 (895)
T ss_pred hccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHH
Confidence 1 01112233433 45666778899999999988887621 12211101111211
Q ss_pred HHHHhCCCChHHHHHHHHHHHhh-----CCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-chhhHHHHHHH
Q 003918 595 FVKRYGKTKLERARELFENAVET-----APADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNH-EKLGMYEIYIA 668 (786)
Q Consensus 595 ~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~~~~~~ 668 (786)
... +..+++..|..+..-.+.. +|- -..+|...-....+.|+-..=...+.+++...|++ +... ..++.
T Consensus 674 ~~s-~~~~d~~~a~~~lR~~i~~~~~~~~~~--q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~--~i~gh 748 (895)
T KOG2076|consen 674 KAS-LYARDPGDAFSYLRSVITQFQFYLDVY--QLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLA--LIYGH 748 (895)
T ss_pred HHH-HhcCCHHHHHHHHHHHHHHHhhhhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCccee--eeech
Confidence 111 2347888888888888877 554 34566644445555666666666777777777765 2222 22333
Q ss_pred HHHHhcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCC--------hHHHHHHHHHHHccCCCCCCHHHHHHHH
Q 003918 669 RAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGE--------IDRARGIYVFASQFADPRSDTEFWNRWH 740 (786)
Q Consensus 669 ~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~--------~~~A~~~~~~al~~~~p~~~~~~~~~~~ 740 (786)
.....+.+..|...|-++... .|++......+.++-+....+. +-++...+.|-.+.-.+....+....++
T Consensus 749 ~~~~~~s~~~Al~~y~ra~~~-~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNig 827 (895)
T KOG2076|consen 749 NLFVNASFKHALQEYMRAFRQ-NPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIG 827 (895)
T ss_pred hHhhccchHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 334677889999999999988 8884443333333333333322 3455666655544311211245666677
Q ss_pred HHHHHcCCHHHHHHHHH
Q 003918 741 EFEVNHGNEDTFREMLR 757 (786)
Q Consensus 741 ~~~~~~G~~~~a~~~~~ 757 (786)
..+...|=..=|+..+.
T Consensus 828 Rayh~~gl~~LA~~YYe 844 (895)
T KOG2076|consen 828 RAYHQIGLVHLAVSYYE 844 (895)
T ss_pred HHHHHcccHHHHHHHHH
Confidence 88888888888877773
No 37
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.86 E-value=7.9e-17 Score=182.12 Aligned_cols=463 Identities=11% Similarity=0.023 Sum_probs=296.9
Q ss_pred HHhCCCCHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhC
Q 003918 53 LKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCAL 132 (786)
Q Consensus 53 l~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~~~A~~~~~~al~~~ 132 (786)
.-..|..+..-..-+...... |++..|+..|+++++.+|.++.....++.++...|+.+.|...+++++ +
T Consensus 27 ~~~~p~~~~~~y~~aii~~r~--------Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~ 96 (822)
T PRK14574 27 FVVNPAMADTQYDSLIIRARA--------GDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--S 96 (822)
T ss_pred cccCccchhHHHHHHHHHHhC--------CCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--c
Confidence 344566666554444444443 888899999999999999885433377777777888999999999998 4
Q ss_pred CCCcchhhHHHHHHHHHhcCCChHHHHHHHHHHHccCCCCHHHHH---HHHHhcCCHHHHHHHHHHHhcCCCccccCCCc
Q 003918 133 PVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFI---EFLVKSKLWQEAAERLASVLNDDQFYSIKGKT 209 (786)
Q Consensus 133 p~~~~~~~w~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~---~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 209 (786)
|.+.........+..+...|++ ++|+.+|+++++.+|++...+. ..+...|+.++|++.+++++..+
T Consensus 97 p~n~~~~~llalA~ly~~~gdy-d~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--------- 166 (822)
T PRK14574 97 SMNISSRGLASAARAYRNEKRW-DQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERD--------- 166 (822)
T ss_pred CCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC---------
Confidence 4432233333345677778888 8999999999999999875544 45557788888888877776421
Q ss_pred chHHHHHHHHHHhcccccccCCcHHHHHHhhhhccCchhHHHHHHHHHHHHhhccHHHHHHHHHHHhhccCchhcHHHHH
Q 003918 210 KHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIF 289 (786)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 289 (786)
|.. . .+..++.++...++..+|+..|+++++..|+..+ ++
T Consensus 167 -----------------------------------p~~-~-~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e---~~ 206 (822)
T PRK14574 167 -----------------------------------PTV-Q-NYMTLSYLNRATDRNYDALQASSEAVRLAPTSEE---VL 206 (822)
T ss_pred -----------------------------------cch-H-HHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHH---HH
Confidence 111 1 1233444555566776799999999998887653 33
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhHhcccccCccchHHHHHHHHHhhhhhc
Q 003918 290 DSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRR 369 (786)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (786)
..|...... .+.. . .+
T Consensus 207 ~~~~~~l~~--------~~~~-------------------------------------------~--~a----------- 222 (822)
T PRK14574 207 KNHLEILQR--------NRIV-------------------------------------------E--PA----------- 222 (822)
T ss_pred HHHHHHHHH--------cCCc-------------------------------------------H--HH-----------
Confidence 333222211 0000 0 00
Q ss_pred hhhhhhhhhhcCCCCH--H--HHHHHHHhhcCCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHH
Q 003918 370 PELANSVLLRQNPHNV--E--QWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVI 445 (786)
Q Consensus 370 ~~~~~~~~l~~~p~~~--~--~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 445 (786)
..+.+..|... . .|+. .+.+.+....+. ..+ .+..- +.--.+.|..-
T Consensus 223 -----~~l~~~~p~~f~~~~~~~l~--------~~~~a~~vr~a~--~~~-----~~~~~---------r~~~~d~ala~ 273 (822)
T PRK14574 223 -----LRLAKENPNLVSAEHYRQLE--------RDAAAEQVRMAV--LPT-----RSETE---------RFDIADKALAD 273 (822)
T ss_pred -----HHHHHhCccccCHHHHHHHH--------HHHHHHHHhhcc--ccc-----ccchh---------hHHHHHHHHHH
Confidence 00133344211 1 1111 122222222221 111 10000 11124667777
Q ss_pred HHHHHhccCCChhh---HHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHH
Q 003918 446 FDKAVQVNYKTVDH---LASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYV 522 (786)
Q Consensus 446 ~~~al~~~p~~~~~---~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (786)
++..+..-+..++. ...+.....-.+...|++.++++.|+.+...... -..-+-...+
T Consensus 274 ~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~-------------------~P~y~~~a~a 334 (822)
T PRK14574 274 YQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYK-------------------MPDYARRWAA 334 (822)
T ss_pred HHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCC-------------------CCHHHHHHHH
Confidence 88877744433321 1233344455567789999999999988743310 0112334458
Q ss_pred HHHHHcCChHHHHHHHHHHHhhccC----CHHH--HHHHHHHHHHcccHHHHHHHHHHHHhhcC-------------CCC
Q 003918 523 DLEESLGNLESTRAVYERILDLRIA----TPQI--IINYALLLEEHKYFEDAFRVYERGVKIFK-------------YPH 583 (786)
Q Consensus 523 ~~~~~~g~~~~A~~~~~~al~~~p~----~~~~--~~~~~~~~~~~g~~~~A~~~~~~al~~~~-------------~p~ 583 (786)
+.|...+++++|..+|++++...|. ++.+ ...+--.+...+++++|..++++..+..+ +|+
T Consensus 335 dayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d 414 (822)
T PRK14574 335 SAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDD 414 (822)
T ss_pred HHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCcc
Confidence 8888999999999999999886532 2223 35566667889999999999999988421 122
Q ss_pred hHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHH
Q 003918 584 VKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMY 663 (786)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 663 (786)
-.......+..+. -.|++.+|.+.+++.+...|. +..++..+|.++...|.+.+|...++.++...|++..+...
T Consensus 415 ~~~~~~l~a~~~~---~~gdl~~Ae~~le~l~~~aP~--n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~ 489 (822)
T PRK14574 415 WIEGQTLLVQSLV---ALNDLPTAQKKLEDLSSTAPA--NQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERA 489 (822)
T ss_pred HHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHH
Confidence 2222222222222 348899999999999999999 67899999999999999999999999999999986555555
Q ss_pred HHHHHHHHHhcChhHHHHHHHHHHHhcCCChh
Q 003918 664 EIYIARAAEIFGVPKTREIYEQAIESGLPDKD 695 (786)
Q Consensus 664 ~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~ 695 (786)
.++.. ...+++.+|..+..+.++. .|++.
T Consensus 490 ~~~~a--l~l~e~~~A~~~~~~l~~~-~Pe~~ 518 (822)
T PRK14574 490 QAETA--MALQEWHQMELLTDDVISR-SPEDI 518 (822)
T ss_pred HHHHH--HhhhhHHHHHHHHHHHHhh-CCCch
Confidence 44444 5778999999999999999 88854
No 38
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.86 E-value=5.7e-17 Score=183.24 Aligned_cols=462 Identities=12% Similarity=0.020 Sum_probs=278.4
Q ss_pred CCCChHh-HHHHHHHHHcCChhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCC
Q 003918 23 NPFSLKL-WWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKM 101 (786)
Q Consensus 23 ~p~~~~~-w~~~~~~~~~~~~~~~~~~~~~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 101 (786)
+|..++. +...+...+.|++..|...|+++++.+|.+......++.+.... |+.++|+..+++++...|.+
T Consensus 30 ~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~--------G~~~~A~~~~eka~~p~n~~ 101 (822)
T PRK14574 30 NPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWA--------GRDQEVIDVYERYQSSMNIS 101 (822)
T ss_pred CccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHc--------CCcHHHHHHHHHhccCCCCC
Confidence 5555542 22234455689999999999999999999853333777766654 89999999999999433444
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHhcCCChHHHHHHHHHHHccCCCCHHHHH--HH
Q 003918 102 PRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFI--EF 179 (786)
Q Consensus 102 ~~~w~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~w~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~--~~ 179 (786)
.......+..+...|++++|..+|+++++.+|.+ ..++..++..+...++. ++|+..++++++.+|.+..... .+
T Consensus 102 ~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n--~~~l~gLa~~y~~~~q~-~eAl~~l~~l~~~dp~~~~~l~layL 178 (822)
T PRK14574 102 SRGLASAARAYRNEKRWDQALALWQSSLKKDPTN--PDLISGMIMTQADAGRG-GVVLKQATELAERDPTVQNYMTLSYL 178 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHhhcCCH-HHHHHHHHHhcccCcchHHHHHHHHH
Confidence 4444455778889999999999999999999976 67777777777788989 9999999999999999764433 33
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHhcccccccCCcHHHHHHhhhhccCchhHHHHHHH--HH
Q 003918 180 LVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSL--AD 257 (786)
Q Consensus 180 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l--a~ 257 (786)
+...++..+|++.++++++. .|.+..++..+...+...+-.. .+..+++..-.-+.+. ...|+.. +.
T Consensus 179 ~~~~~~~~~AL~~~ekll~~-------~P~n~e~~~~~~~~l~~~~~~~---~a~~l~~~~p~~f~~~-~~~~l~~~~~a 247 (822)
T PRK14574 179 NRATDRNYDALQASSEAVRL-------APTSEEVLKNHLEILQRNRIVE---PALRLAKENPNLVSAE-HYRQLERDAAA 247 (822)
T ss_pred HHhcchHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCcH---HHHHHHHhCccccCHH-HHHHHHHHHHH
Confidence 33467777799999999964 4667777777776666544321 1222222211111111 1112111 10
Q ss_pred HHHhhc------------cHHHHHHHHHHHhhccCchhcHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcch
Q 003918 258 YYIRRE------------LFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAED 325 (786)
Q Consensus 258 ~y~~~g------------~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (786)
-.++.. -.+.|+.-++..+...+..+.
T Consensus 248 ~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~----------------------------------------- 286 (822)
T PRK14574 248 EQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPE----------------------------------------- 286 (822)
T ss_pred HHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCc-----------------------------------------
Confidence 111110 112222222222221111100
Q ss_pred hhhHhhhhhhHHHHHHhHhcccccCccchHHHHHHHHHhhhhhchhhhhhhhhhcCCCCHHHHHHHHHhh-cCCchhHHH
Q 003918 326 EDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIF-EGNPTKQIL 404 (786)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~-~~~~~~a~~ 404 (786)
...... ..+..+ ++.+. .++..+++.
T Consensus 287 --------------------------~~~~~~-~~~~Dr--------------------------l~aL~~r~r~~~vi~ 313 (822)
T PRK14574 287 --------------------------AQADYQ-RARIDR--------------------------LGALLVRHQTADLIK 313 (822)
T ss_pred --------------------------cchHHH-HHHHHH--------------------------HHHHHHhhhHHHHHH
Confidence 000000 011110 01111 155666777
Q ss_pred HHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCC---hhhHHHHHHHHHHHHHhccCHHHHH
Q 003918 405 TYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKT---VDHLASIWCEWAEMELRHKNFKGAL 481 (786)
Q Consensus 405 ~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~a~~~~~~g~~~~A~ 481 (786)
.|+..-....+ -...+....|..|...+++++|..+|++++...|.. +..+ .....+.-.++..+++++|.
T Consensus 314 ~y~~l~~~~~~-----~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~-~~~~~L~yA~ld~e~~~~A~ 387 (822)
T PRK14574 314 EYEAMEAEGYK-----MPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDL-LDADDLYYSLNESEQLDKAY 387 (822)
T ss_pred HHHHhhhcCCC-----CCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcch-HHHHHHHHHHHhcccHHHHH
Confidence 77764422212 123455666777777777777777777777654211 0011 11122222235667777777
Q ss_pred HHHHHHhcCCch------HHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHH
Q 003918 482 ELMRRATAEPSV------EVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINY 555 (786)
Q Consensus 482 ~~~~~al~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 555 (786)
.++++..+.+|. ...+..+ .+-.......+..+.-.|+..+|.+.++..+...|.++.++..+
T Consensus 388 ~~l~~~~~~~p~~~~~~~~~~~~pn-----------~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~ 456 (822)
T PRK14574 388 QFAVNYSEQTPYQVGVYGLPGKEPN-----------DDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIAL 456 (822)
T ss_pred HHHHHHHhcCCcEEeccCCCCCCCC-----------ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 777777653220 0000000 02234455556666777888888888888888888888888888
Q ss_pred HHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccC
Q 003918 556 ALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADA 622 (786)
Q Consensus 556 ~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 622 (786)
|.++...|.+.+|...++++... +|++..+....+.... ..+++.+|..+....++..|++.
T Consensus 457 A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al---~l~e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 457 ASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAM---ALQEWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred HHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHH---hhhhHHHHHHHHHHHHhhCCCch
Confidence 88888888888888888777766 5777666655443333 44778888888888888888743
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=1.2e-19 Score=188.02 Aligned_cols=290 Identities=14% Similarity=0.188 Sum_probs=231.5
Q ss_pred CchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCH
Q 003918 398 NPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNF 477 (786)
Q Consensus 398 ~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~ 477 (786)
+..+|+..|++ +-...+ +..-+...+|..|...+++++|.++|+.+-+..|-.++.. ++ |...+....+-
T Consensus 334 ~~~~A~~~~~k-lp~h~~-----nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~m-ei---yST~LWHLq~~ 403 (638)
T KOG1126|consen 334 NCREALNLFEK-LPSHHY-----NTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGM-EI---YSTTLWHLQDE 403 (638)
T ss_pred HHHHHHHHHHh-hHHhcC-----CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccch-hH---HHHHHHHHHhh
Confidence 35677777777 433222 3445567778888888888888888888888777665332 11 22222222222
Q ss_pred HHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHH
Q 003918 478 KGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYAL 557 (786)
Q Consensus 478 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 557 (786)
-+---+-+..+...| ++++.|...|+++..+++.+.|+++|++|++++|+..-++..+|.
T Consensus 404 v~Ls~Laq~Li~~~~--------------------~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGh 463 (638)
T KOG1126|consen 404 VALSYLAQDLIDTDP--------------------NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGH 463 (638)
T ss_pred HHHHHHHHHHHhhCC--------------------CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCC
Confidence 222223345556666 789999999999999999999999999999999999999999999
Q ss_pred HHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHc
Q 003918 558 LLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDY 637 (786)
Q Consensus 558 ~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~ 637 (786)
=+.....+|.|...|++|+.. +|.+..+|+.++..+. .+++++.|.-.|++|++.+|. +..+...++.++.+.
T Consensus 464 E~~~~ee~d~a~~~fr~Al~~--~~rhYnAwYGlG~vy~---Kqek~e~Ae~~fqkA~~INP~--nsvi~~~~g~~~~~~ 536 (638)
T KOG1126|consen 464 ESIATEEFDKAMKSFRKALGV--DPRHYNAWYGLGTVYL---KQEKLEFAEFHFQKAVEINPS--NSVILCHIGRIQHQL 536 (638)
T ss_pred hhhhhHHHHhHHHHHHhhhcC--CchhhHHHHhhhhhee---ccchhhHHHHHHHhhhcCCcc--chhHHhhhhHHHHHh
Confidence 999999999999999999996 8999999988654443 568899999999999999999 678888999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHH
Q 003918 638 GLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRAR 717 (786)
Q Consensus 638 g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~ 717 (786)
|..++|+.+|++|+..+|.++-..+..+.+.. ..+++++|...+++.-+. .|+. ..++..+|.++.+.|+.+.|.
T Consensus 537 k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~--~~~~~~eal~~LEeLk~~-vP~e--s~v~~llgki~k~~~~~~~Al 611 (638)
T KOG1126|consen 537 KRKDKALQLYEKAIHLDPKNPLCKYHRASILF--SLGRYVEALQELEELKEL-VPQE--SSVFALLGKIYKRLGNTDLAL 611 (638)
T ss_pred hhhhHHHHHHHHHHhcCCCCchhHHHHHHHHH--hhcchHHHHHHHHHHHHh-Ccch--HHHHHHHHHHHHHHccchHHH
Confidence 99999999999999999998766666666654 578999999999999999 8984 558888999999999999999
Q ss_pred HHHHHHHccCCCC
Q 003918 718 GIYVFASQFADPR 730 (786)
Q Consensus 718 ~~~~~al~~~~p~ 730 (786)
.-|-=|... +|.
T Consensus 612 ~~f~~A~~l-dpk 623 (638)
T KOG1126|consen 612 LHFSWALDL-DPK 623 (638)
T ss_pred HhhHHHhcC-CCc
Confidence 999999987 676
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=2e-19 Score=186.33 Aligned_cols=222 Identities=15% Similarity=0.224 Sum_probs=197.8
Q ss_pred HHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHH
Q 003918 402 QILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGAL 481 (786)
Q Consensus 402 a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~ 481 (786)
+..++.+-|-..+| .+|..|..+|.+|.-+++.+.|++.|+++++++|... -.|..++.-+.....+|.|.
T Consensus 405 ~Ls~Laq~Li~~~~-----~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~fa----YayTLlGhE~~~~ee~d~a~ 475 (638)
T KOG1126|consen 405 ALSYLAQDLIDTDP-----NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFA----YAYTLLGHESIATEEFDKAM 475 (638)
T ss_pred HHHHHHHHHHhhCC-----CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccc----hhhhhcCChhhhhHHHHhHH
Confidence 34555554545666 7899999999999999999999999999999999886 77777887778889999999
Q ss_pred HHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHH
Q 003918 482 ELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEE 561 (786)
Q Consensus 482 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 561 (786)
..|++|+.+.| ..-++|+.+|.+|.++++++.|.--|++|++++|.+..+...+|.++.+
T Consensus 476 ~~fr~Al~~~~--------------------rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~ 535 (638)
T KOG1126|consen 476 KSFRKALGVDP--------------------RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQ 535 (638)
T ss_pred HHHHhhhcCCc--------------------hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHH
Confidence 99999999999 7889999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHH
Q 003918 562 HKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAK 641 (786)
Q Consensus 562 ~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~ 641 (786)
.|+.++|+.+|++|+.+ +|.++..-+..+..+. ..+++++|...+|...+..|+ ...++..+|.++.+.|+.+
T Consensus 536 ~k~~d~AL~~~~~A~~l--d~kn~l~~~~~~~il~---~~~~~~eal~~LEeLk~~vP~--es~v~~llgki~k~~~~~~ 608 (638)
T KOG1126|consen 536 LKRKDKALQLYEKAIHL--DPKNPLCKYHRASILF---SLGRYVEALQELEELKELVPQ--ESSVFALLGKIYKRLGNTD 608 (638)
T ss_pred hhhhhHHHHHHHHHHhc--CCCCchhHHHHHHHHH---hhcchHHHHHHHHHHHHhCcc--hHHHHHHHHHHHHHHccch
Confidence 99999999999999998 7888776666555554 457899999999999999999 6789999999999999999
Q ss_pred HHHHHHHHHHhcCCCCch
Q 003918 642 RAMKVYDQATKAVPNHEK 659 (786)
Q Consensus 642 ~A~~~~~~~l~~~p~~~~ 659 (786)
.|+..|--+++.+|....
T Consensus 609 ~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 609 LALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHhhHHHhcCCCccch
Confidence 999999999999997543
No 41
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.85 E-value=7.4e-18 Score=165.47 Aligned_cols=484 Identities=14% Similarity=0.092 Sum_probs=327.4
Q ss_pred hhHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHH----HHHhcCCCh
Q 003918 82 PEYETLNNTFERALV--TMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLR----FVEQEGIPI 155 (786)
Q Consensus 82 ~~~~~A~~~~~~al~--~~p~~~~~w~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~w~~~~~----~~~~~~~~~ 155 (786)
..+.+|..+|+-.++ ..|+...+-..++.+++++.++.+|.+.|+-||...|.. +....+...+ ...+.|++
T Consensus 215 dm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsi-nk~~rikil~nigvtfiq~gqy- 292 (840)
T KOG2003|consen 215 DMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSI-NKDMRIKILNNIGVTFIQAGQY- 292 (840)
T ss_pred HHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhcccc-chhhHHHHHhhcCeeEEecccc-
Confidence 567789999988887 358887788888999999999999999999999999974 2333333222 12356889
Q ss_pred HHHHHHHHHHHccCCCCHHHH--HHHHHhcCCHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHhcccccccCCcH
Q 003918 156 ETSLRVYRRYLKYDPSHIEDF--IEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNV 233 (786)
Q Consensus 156 ~~A~~~~~~~l~~~p~~~~~~--~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (786)
+.|+..|+..++..|+...++ +..+...|+-++..+.|.+++..+.+..... |.. ....|+
T Consensus 293 ~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddk------yi~----~~ddp~------- 355 (840)
T KOG2003|consen 293 DDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDK------YIK----EKDDPD------- 355 (840)
T ss_pred hhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCccc------ccC----CcCCcc-------
Confidence 999999999999999977554 4556678999999999999997654311100 000 000000
Q ss_pred HHHHHhhhhccCchhHHHHHHHHHHHHhhc-cHHHHHHHHHHHhhccCchhcHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Q 003918 234 DAIIRGGIRKFTDEVGRLWTSLADYYIRRE-LFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVE 312 (786)
Q Consensus 234 ~~~~~~~~~~~p~~~~~~~~~la~~y~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (786)
..++.+.+.. +. |-.+..+.+ +-++++-.--+.+...
T Consensus 356 ~~ll~eai~n------d~---lk~~ek~~ka~aek~i~ta~kiiapv--------------------------------- 393 (840)
T KOG2003|consen 356 DNLLNEAIKN------DH---LKNMEKENKADAEKAIITAAKIIAPV--------------------------------- 393 (840)
T ss_pred hHHHHHHHhh------HH---HHHHHHhhhhhHHHHHHHHHHHhccc---------------------------------
Confidence 0011111100 00 000000000 0011111111111100
Q ss_pred ccccccccCCcchhhhHhhhhhhHHHHHHhHhcccccCccchHHHHHHHHHhhhhhchhhhhhhhhhcCCCCHHHHHHHH
Q 003918 313 EEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRV 392 (786)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~ 392 (786)
+.|...
T Consensus 394 -------------------------------------------------------------------i~~~fa------- 399 (840)
T KOG2003|consen 394 -------------------------------------------------------------------IAPDFA------- 399 (840)
T ss_pred -------------------------------------------------------------------cccchh-------
Confidence 000000
Q ss_pred HhhcCCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHH
Q 003918 393 KIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMEL 472 (786)
Q Consensus 393 ~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~ 472 (786)
-..+-+++.++... .. +-..++-+.-+.-+++.|+++.|+++++-.-+.+.... +..-..+..+..
T Consensus 400 ----~g~dwcle~lk~s~-~~------~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~---saaa~nl~~l~f 465 (840)
T KOG2003|consen 400 ----AGCDWCLESLKASQ-HA------ELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTA---SAAANNLCALRF 465 (840)
T ss_pred ----cccHHHHHHHHHhh-hh------hhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhh---HHHhhhhHHHHH
Confidence 00011111111111 00 01123345566778899999999988765444333221 122333333333
Q ss_pred h--ccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHH
Q 003918 473 R--HKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQ 550 (786)
Q Consensus 473 ~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 550 (786)
. -.++..|.++-+.++.++. -++.....-+++....|++++|...|+.++..+..+.+
T Consensus 466 lqggk~~~~aqqyad~aln~dr--------------------yn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~e 525 (840)
T KOG2003|consen 466 LQGGKDFADAQQYADIALNIDR--------------------YNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTE 525 (840)
T ss_pred HhcccchhHHHHHHHHHhcccc--------------------cCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHH
Confidence 3 3478899999999988766 34455555566666789999999999999999998999
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHH
Q 003918 551 IIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQY 630 (786)
Q Consensus 551 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 630 (786)
++++.|..+..+|+.++|+.+|-+.-.+. -++..+..+.+..+ +.+ .+..+|++++.++.+..|+ ++.+...+
T Consensus 526 alfniglt~e~~~~ldeald~f~klh~il--~nn~evl~qianiy-e~l--ed~aqaie~~~q~~slip~--dp~ilskl 598 (840)
T KOG2003|consen 526 ALFNIGLTAEALGNLDEALDCFLKLHAIL--LNNAEVLVQIANIY-ELL--EDPAQAIELLMQANSLIPN--DPAILSKL 598 (840)
T ss_pred HHHHhcccHHHhcCHHHHHHHHHHHHHHH--HhhHHHHHHHHHHH-HHh--hCHHHHHHHHHHhcccCCC--CHHHHHHH
Confidence 99999999999999999999999988874 56677777755544 433 5799999999999999999 78999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHc
Q 003918 631 AKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSL 710 (786)
Q Consensus 631 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~ 710 (786)
+.+|-+.|+-..|..++-...+.+|.+-+..-|.+-.+ ....-.++|+.+|+++.-. .|+ ....-+..+..+++.
T Consensus 599 ~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayy--idtqf~ekai~y~ekaali-qp~--~~kwqlmiasc~rrs 673 (840)
T KOG2003|consen 599 ADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYY--IDTQFSEKAINYFEKAALI-QPN--QSKWQLMIASCFRRS 673 (840)
T ss_pred HHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHH--HhhHHHHHHHHHHHHHHhc-Ccc--HHHHHHHHHHHHHhc
Confidence 99999999999999999999999998876666655433 3455678999999999988 887 444556668899999
Q ss_pred CChHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHcCC
Q 003918 711 GEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGN 748 (786)
Q Consensus 711 g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~G~ 748 (786)
|++++|...|...... -|. +.+....++++....|-
T Consensus 674 gnyqka~d~yk~~hrk-fpe-dldclkflvri~~dlgl 709 (840)
T KOG2003|consen 674 GNYQKAFDLYKDIHRK-FPE-DLDCLKFLVRIAGDLGL 709 (840)
T ss_pred ccHHHHHHHHHHHHHh-Ccc-chHHHHHHHHHhccccc
Confidence 9999999999999887 576 57888888887777763
No 42
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.85 E-value=1.7e-16 Score=170.37 Aligned_cols=581 Identities=12% Similarity=0.025 Sum_probs=288.5
Q ss_pred HhHHHHhhCCCChHhHHHHHHHH-HcCChhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHH
Q 003918 15 LYEEELLRNPFSLKLWWRYLVAK-REAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFER 93 (786)
Q Consensus 15 ~~~~~l~~~p~~~~~w~~~~~~~-~~~~~~~~~~~~~~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 93 (786)
.|=+++..+|+-.++|--+-.+- .-.+..+|..+|++|.+.+|.++..|...+...... .+++.|....-+
T Consensus 480 ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~--------~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 480 ALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEE--------STWEEAFEICLR 551 (1238)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhcc--------ccHHHHHHHHHH
Confidence 34455666666666665554432 222555666666666666666666666655554432 555666555444
Q ss_pred HHHhcCC--CHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHhcCCChHHHHHHHHHHHccCCC
Q 003918 94 ALVTMHK--MPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPS 171 (786)
Q Consensus 94 al~~~p~--~~~~w~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~w~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 171 (786)
+-+..|. -..-|...+-.+.+.++...|..-|+.|++.+|.+ ...|..+++.+.+.|.+ ..|.++|.++..++|.
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD--~n~W~gLGeAY~~sGry-~~AlKvF~kAs~LrP~ 628 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKD--YNLWLGLGEAYPESGRY-SHALKVFTKASLLRPL 628 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchh--HHHHHHHHHHHHhcCce-ehHHHhhhhhHhcCcH
Confidence 4444442 12335555555556666667777777777777754 67777777777777777 7777777777777777
Q ss_pred CHHH-HH--HHHHhcCCHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHhcccccccCCcHHHHHHhhhhccCchh
Q 003918 172 HIED-FI--EFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEV 248 (786)
Q Consensus 172 ~~~~-~~--~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 248 (786)
++-. |. -+....|++.+|...+..++... ..|.. ...+.
T Consensus 629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~-----------s~e~~---------------------------~q~gL 670 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNGKYKEALDALGLIIYAF-----------SLERT---------------------------GQNGL 670 (1238)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-----------HHHHH---------------------------hhhhH
Confidence 6622 21 33445577777777766665210 01100 00112
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHhhccCchh-----cHHHHHHHHHH----HHHH-----------HHHHHhcCCC
Q 003918 249 GRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVR-----DFSVIFDSYSQ----FEEI-----------MVSAKMAKPD 308 (786)
Q Consensus 249 ~~~~~~la~~y~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~~~~~~~----~~~~-----------~~~~~~~~~~ 308 (786)
++.+++.+..+...|-+.+|..++++.++...-.. +-...|.-..+ +-+- +....++..+
T Consensus 671 aE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~ 750 (1238)
T KOG1127|consen 671 AESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTG 750 (1238)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence 44555555556666666666666666665421110 00112211111 0000 0000011111
Q ss_pred CCCcccccccccCCcchhhhHhhhhhhHHHHHHhHhcccccCccchHHHHHHHHHhhhhh--chhhhhhhhhhcCCCCHH
Q 003918 309 LSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNR--RPELANSVLLRQNPHNVE 386 (786)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~p~~~~ 386 (786)
.... .+-+++...-...++-.......|++-...+......+.+-+.+ .++.+....++...++..
T Consensus 751 ~l~~------------~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~ 818 (1238)
T KOG1127|consen 751 ALKK------------NDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEG 818 (1238)
T ss_pred cCcc------------hhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHH
Confidence 0000 00111111112222211111222221111111101111111111 123444555666677777
Q ss_pred HHHHHHHhhc-CCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHH
Q 003918 387 QWHRRVKIFE-GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWC 465 (786)
Q Consensus 387 ~~~~~~~~~~-~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 465 (786)
.|..++-+.. |++.-+...|-+.+. ..| .+...|.++|.++.+..+++.|...|.++..++|.+. ..|.
T Consensus 819 ~WnaLGVlsg~gnva~aQHCfIks~~-sep-----~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl----~~Wl 888 (1238)
T KOG1127|consen 819 LWNALGVLSGIGNVACAQHCFIKSRF-SEP-----TCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNL----VQWL 888 (1238)
T ss_pred HHHHHHHhhccchhhhhhhhhhhhhh-ccc-----cchhheeccceeEEecccHHHhhHHHHhhhhcCchhh----HHHH
Confidence 7777766644 666667777777663 344 5666777777777777777777777777777777765 6777
Q ss_pred HHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCCh----------HHHH
Q 003918 466 EWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNL----------ESTR 535 (786)
Q Consensus 466 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~----------~~A~ 535 (786)
..+.+-...|+.-++..+|.......... .+ ......|..-.......|++ ..|-
T Consensus 889 G~Ali~eavG~ii~~~~lfaHs~el~~~~----gk-----------a~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs 953 (1238)
T KOG1127|consen 889 GEALIPEAVGRIIERLILFAHSDELCSKE----GK-----------AKKFQYWLCATEIHLQNGNIEESINTARKISSAS 953 (1238)
T ss_pred HHHHhHHHHHHHHHHHHHHHhhHHhhccc----cc-----------cchhhHHHHHHHHHHhccchHHHHHHhhhhhhhH
Confidence 77777777777666666666532221100 00 01223343333333334433 3344
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCC----ChHHHHHHHHHHHHHHhCCCChHHHHHHH
Q 003918 536 AVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYP----HVKDIWVTYLSKFVKRYGKTKLERARELF 611 (786)
Q Consensus 536 ~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 611 (786)
-+..+-+...|++..++...|.+..+++.++.|.+...|.+...... .+..+--.++... ++.|+++.|...+
T Consensus 954 ~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~---lslgefe~A~~a~ 1030 (1238)
T KOG1127|consen 954 LALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLE---LSLGEFESAKKAS 1030 (1238)
T ss_pred HHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhh---hhhcchhhHhhhh
Confidence 45566666678888888888888888888888888887777653111 1111111111111 2335555444332
Q ss_pred HHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHH-HHHHhcChhHHHHHHHHHHHh
Q 003918 612 ENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIA-RAAEIFGVPKTREIYEQAIES 689 (786)
Q Consensus 612 ~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~al~~ 689 (786)
.. .|...+ +--.......+..|+++++.+.|++++....++.+..+...-+. .....+..+.|+...-+++..
T Consensus 1031 ~~----~~~evd-Edi~gt~l~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~l 1104 (1238)
T KOG1127|consen 1031 WK----EWMEVD-EDIRGTDLTLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSL 1104 (1238)
T ss_pred cc----cchhHH-HHHhhhhHHHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHh
Confidence 21 111100 00111111113356777777777777766655544222222221 122345556666666666555
No 43
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.84 E-value=3.4e-17 Score=164.97 Aligned_cols=417 Identities=18% Similarity=0.267 Sum_probs=266.6
Q ss_pred HHHHhhCCCChHhHHHHHHHHHcCChhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc--------CCC----------
Q 003918 17 EEELLRNPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVK--------NLP---------- 78 (786)
Q Consensus 17 ~~~l~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~al~~~P~~~~~w~~~~~~~~~~~~--------~~~---------- 78 (786)
++.|+.||.|+++|..+++..+..++++++..||+.+..+|.++..|..|+..++..-. ..|
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW 89 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLW 89 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHH
Confidence 77888899999999999888776688888888888888888888888888877643210 011
Q ss_pred ------------CCchhHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHc---------CCcHHHHHHHHHHHHhhCCC
Q 003918 79 ------------ITHPEYETLNNTFERALVT---MHKMPRIWIMYLETLTS---------QKFITKARRTFDRALCALPV 134 (786)
Q Consensus 79 ------------~~~~~~~~A~~~~~~al~~---~p~~~~~w~~~~~~~~~---------~~~~~~A~~~~~~al~~~p~ 134 (786)
...|--+...+.|+-++.. ++.+..+|..|+.|... +.+++..++.|+||+. .|.
T Consensus 90 ~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~-tPm 168 (656)
T KOG1914|consen 90 KLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV-TPM 168 (656)
T ss_pred HHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc-Ccc
Confidence 0112224455667777764 46888999999999872 3468889999999998 676
Q ss_pred CcchhhHHHHHHHHHhcCCChHHHHHHHHHHHccCCCCHHHHHHHHHhcCCHHHHHHHHHHHhc------CCCc--cccC
Q 003918 135 TQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLN------DDQF--YSIK 206 (786)
Q Consensus 135 ~~~~~~w~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~g~~~~A~~~~~~~l~------~~~~--~~~~ 206 (786)
.....+|..|..++...+.. .|++....- ...|..|..+++++.. .... ..+.
T Consensus 169 ~nlEkLW~DY~~fE~~IN~~--tarK~i~e~-----------------s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~ 229 (656)
T KOG1914|consen 169 HNLEKLWKDYEAFEQEINII--TARKFIGER-----------------SPEYMNARRVYQELQNLTRGLNRNAPAVPPKG 229 (656)
T ss_pred ccHHHHHHHHHHHHHHHHHH--HHHHHHHhh-----------------CHHHHHHHHHHHHHHHHHhhhcccCCCCCCCC
Confidence 65789999999988655433 444433321 1134445555544432 1111 0111
Q ss_pred CC---cchHHHHHHHHHHhcccccccCCc-----HHHHHHhhhhccCchhHHHHHHHHHHHHhhcc--------------
Q 003918 207 GK---TKHRLWLELCDLLTTHATEISGLN-----VDAIIRGGIRKFTDEVGRLWTSLADYYIRREL-------------- 264 (786)
Q Consensus 207 ~~---~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~~~~la~~y~~~g~-------------- 264 (786)
.+ ...++|..++.+++.+|-...... +.-+++..+.-++-. +++|+..+.++...++
T Consensus 230 T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~-peiWy~~s~yl~~~s~l~~~~~d~~~a~~~ 308 (656)
T KOG1914|consen 230 TKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYH-PEIWYDYSMYLIEISDLLTEKGDVPDAKSL 308 (656)
T ss_pred ChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhhHHHHHhcccccchhh
Confidence 11 134679999999998886532212 122455555555554 7788888777776666
Q ss_pred HHHHHHHHHHHhhccCchhcHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhHh
Q 003918 265 FEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVL 344 (786)
Q Consensus 265 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (786)
-+++.++|+++++..-. ....++.+|+++++.....
T Consensus 309 t~e~~~~yEr~I~~l~~--~~~~Ly~~~a~~eE~~~~~------------------------------------------ 344 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLK--ENKLLYFALADYEESRYDD------------------------------------------ 344 (656)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHhhHHHhccc------------------------------------------
Confidence 55666666666643211 1234555555544320000
Q ss_pred cccccCccchHHHHHHHHHhhhhhchhhhhhhhhhcCCCCHHHHHHHHHhhcCCchhHHHHHHHHHhccCCCccCCCcHH
Q 003918 345 NGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHT 424 (786)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~ 424 (786)
...+..-..+++.+...+- +...
T Consensus 345 ----------------------------------------------------n~~~~~~~~~~~ll~~~~~-----~~tL 367 (656)
T KOG1914|consen 345 ----------------------------------------------------NKEKKVHEIYNKLLKIEDI-----DLTL 367 (656)
T ss_pred ----------------------------------------------------chhhhhHHHHHHHHhhhcc-----CCce
Confidence 0122334444444432211 3345
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHH-HhccCHHHHHHHHHHHhcCCchHHhhhhhccC
Q 003918 425 LWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEME-LRHKNFKGALELMRRATAEPSVEVRRRVAADG 503 (786)
Q Consensus 425 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 503 (786)
+|+.+..+-.+..-...||.+|.+|-+..-... .++..-|.++ ...++.+-|.++|+-++...+
T Consensus 368 v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~h----hVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~----------- 432 (656)
T KOG1914|consen 368 VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRH----HVFVAAALMEYYCSKDKETAFRIFELGLKKFG----------- 432 (656)
T ss_pred ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcc----hhhHHHHHHHHHhcCChhHHHHHHHHHHHhcC-----------
Confidence 777777777777778888888888876332221 4444444443 236788888888888888777
Q ss_pred ChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--ccC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhc
Q 003918 504 NEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDL--RIA-TPQIIINYALLLEEHKYFEDAFRVYERGVKIF 579 (786)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 579 (786)
+++..-..|.+++...++-..++.+|++++.. .|+ ...+|..+..++..-|+...++++-+|-...+
T Consensus 433 ---------d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af 502 (656)
T KOG1914|consen 433 ---------DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAF 502 (656)
T ss_pred ---------CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhc
Confidence 67777788888888888888888888888876 222 23678888888888888888887777766654
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=5.4e-17 Score=160.62 Aligned_cols=291 Identities=15% Similarity=0.104 Sum_probs=217.2
Q ss_pred CCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccC
Q 003918 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKN 476 (786)
Q Consensus 397 ~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~ 476 (786)
.+.++++.-++..+...-| .+..+-...|.....+.++|+|+.+|+.+++.+|-..+.+ ..|.+.+.-..+
T Consensus 241 ~q~~e~~~k~e~l~~~gf~-----~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dm----dlySN~LYv~~~ 311 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVGFP-----NSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDM----DLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHhccCC-----ccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhH----HHHhHHHHHHhh
Confidence 3556677777765533233 5666667778888889999999999999999998766332 223333322222
Q ss_pred HHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHH
Q 003918 477 FKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYA 556 (786)
Q Consensus 477 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 556 (786)
-.+..-+-..+..++. -.+....-.|+.|...++-++|+..|+++++++|....+|..+|
T Consensus 312 ~skLs~LA~~v~~idK--------------------yR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmG 371 (559)
T KOG1155|consen 312 KSKLSYLAQNVSNIDK--------------------YRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMG 371 (559)
T ss_pred hHHHHHHHHHHHHhcc--------------------CCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhh
Confidence 2222222233333333 12344445567777788899999999999999999999999999
Q ss_pred HHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHH
Q 003918 557 LLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEED 636 (786)
Q Consensus 557 ~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~ 636 (786)
+=|....+...|++.|++|+++ +|.+..+|..++..+. .+ +-..-|.-+|++|++.-|+ +..+|..+|.+|.+
T Consensus 372 HEyvEmKNt~AAi~sYRrAvdi--~p~DyRAWYGLGQaYe-im--~Mh~YaLyYfqkA~~~kPn--DsRlw~aLG~CY~k 444 (559)
T KOG1155|consen 372 HEYVEMKNTHAAIESYRRAVDI--NPRDYRAWYGLGQAYE-IM--KMHFYALYYFQKALELKPN--DSRLWVALGECYEK 444 (559)
T ss_pred HHHHHhcccHHHHHHHHHHHhc--CchhHHHHhhhhHHHH-Hh--cchHHHHHHHHHHHhcCCC--chHHHHHHHHHHHH
Confidence 9999999999999999999998 7999999998665443 33 3477899999999999999 78999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHHh----cCCChhHHHHHHHHHHHHHHcCC
Q 003918 637 YGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIES----GLPDKDVKAMCLKYAELEKSLGE 712 (786)
Q Consensus 637 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~~p~~~~~~~~~~~~~~~~~~g~ 712 (786)
.++.++|++.|.+++.....+ ...+..++..+.+.++.++|...|++.++. |.-......+.+-++..+.+.++
T Consensus 445 l~~~~eAiKCykrai~~~dte--~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~ 522 (559)
T KOG1155|consen 445 LNRLEEAIKCYKRAILLGDTE--GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKD 522 (559)
T ss_pred hccHHHHHHHHHHHHhccccc--hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcc
Confidence 999999999999999876553 333444555667889999999999999984 11222234455557999999999
Q ss_pred hHHHHHHHHHHHc
Q 003918 713 IDRARGIYVFASQ 725 (786)
Q Consensus 713 ~~~A~~~~~~al~ 725 (786)
+++|-.+...++.
T Consensus 523 ~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 523 FDEASYYATLVLK 535 (559)
T ss_pred hHHHHHHHHHHhc
Confidence 9999988888776
No 45
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=99.81 E-value=4.2e-16 Score=156.20 Aligned_cols=476 Identities=18% Similarity=0.235 Sum_probs=268.9
Q ss_pred CCCcchHhHHHHhhCCCChHhHHHHHHHHH--------c-------------CChhhHHHHHHHHHHhCCCCHHHHHHHH
Q 003918 9 PSEDDLLYEEELLRNPFSLKLWWRYLVAKR--------E-------------APFKKRFVIYERALKALPGSYKLWHAYL 67 (786)
Q Consensus 9 ~~~~~~~~~~~l~~~p~~~~~w~~~~~~~~--------~-------------~~~~~~~~~~~~al~~~P~~~~~w~~~~ 67 (786)
|.++.-.|+-.|++.-.....++.|+.++. + ...+++...|.+|+.++|.|+.+|..|+
T Consensus 33 Ivk~Rr~fE~kL~rr~~~i~Dfi~YI~YE~nl~~lr~kR~Kk~~~k~S~sd~si~~rIv~lyr~at~rf~~D~~lW~~yi 112 (568)
T KOG2396|consen 33 IVKKRRDFELKLQRRTLSIEDFINYIQYEINLEELRAKRRKKKRVKYSFSDDSIPNRIVFLYRRATNRFNGDVKLWLSYI 112 (568)
T ss_pred HHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 456667788888888888899999988764 0 1236778899999999999999999999
Q ss_pred HHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCC-cHHHHHHHHHHHHhhCCCCcchhhHHHHHH
Q 003918 68 IERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQK-FITKARRTFDRALCALPVTQHDRIWEIYLR 146 (786)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~w~~~~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~w~~~~~ 146 (786)
.++.+. +.+.+..++|.+++..+|++|++|+..|.++++-+ +++.|+.+|.++|+.+|.+ +.+|..|..
T Consensus 113 ~f~kk~--------~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npds--p~Lw~eyfr 182 (568)
T KOG2396|consen 113 AFCKKK--------KTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDS--PKLWKEYFR 182 (568)
T ss_pred HHHHHh--------cchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCC--hHHHHHHHH
Confidence 999876 66889999999999999999999999999999754 5999999999999999976 999999998
Q ss_pred HHHhcCCChHHHHHHHHHHHccCCCCHH--------HHHHHHH---------h-cC-----CHHHHHHHHHHHhcCCCcc
Q 003918 147 FVEQEGIPIETSLRVYRRYLKYDPSHIE--------DFIEFLV---------K-SK-----LWQEAAERLASVLNDDQFY 203 (786)
Q Consensus 147 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~--------~~~~~~~---------~-~g-----~~~~A~~~~~~~l~~~~~~ 203 (786)
++...-.. ...-.+.+..+.++.+ ++..... . .+ .++.+.+.=+.++...
T Consensus 183 mEL~~~~K----l~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~kel~k~i~d~~--- 255 (568)
T KOG2396|consen 183 MELMYAEK----LRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLKELQKNIIDDL--- 255 (568)
T ss_pred HHHHHHHH----HHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHHHHHHHHHHHH---
Confidence 87532211 1111122222222210 0000000 0 00 0011111111111110
Q ss_pred ccCCCcchHHHHHHHHHHhcccccccCCcHHHHHHhhhhccCchhHHHHHHHHHHHHhhccHHHHHHHHHHHhhccCchh
Q 003918 204 SIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVR 283 (786)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~p~~~ 283 (786)
...+|.++.+|..+.+-+.. -+.+..++.. ...+.-+.---.-+....+|+.++...|+.
T Consensus 256 ~~~~~~np~~~~~laqr~l~-----------i~~~tdl~~~--------~~~~~~~~~~~k~s~~~~v~ee~v~~l~t~- 315 (568)
T KOG2396|consen 256 QSKAPDNPLLWDDLAQRELE-----------ILSQTDLQHT--------DNQAKAVEVGSKESRCCAVYEEAVKTLPTE- 315 (568)
T ss_pred hccCCCCCccHHHHHHHHHH-----------HHHHhhccch--------hhhhhchhcchhHHHHHHHHHHHHHHhhHH-
Confidence 01123333344433221110 0000000000 000000000012344568889988877654
Q ss_pred cHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhHhcccccCccc-hHHHHHHHH
Q 003918 284 DFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVK-DVDLRLARL 362 (786)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 362 (786)
.+|..|+.+-....... . ...|.+.+..+++.-.-........ .+..-...+
T Consensus 316 ---sm~e~YI~~~lE~~~~~----r--------------------~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~ 368 (568)
T KOG2396|consen 316 ---SMWECYITFCLERFTFL----R--------------------GKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCL 368 (568)
T ss_pred ---HHHHHHHHHHHHHHHhh----h--------------------hhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 47877777654322200 0 0012223333332211111101110 111111111
Q ss_pred HhhhhhchhhhhhhhhhcCCCCHHHHHHHHHhhcCCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCC-hhH
Q 003918 363 EHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKD-IAN 441 (786)
Q Consensus 363 ~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~ 441 (786)
... +.+.+.+........-++...|+...+........+.-.|+..-..+.+. .+......|..-. .|+ .+.
T Consensus 369 ~t~-~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~-~~s~~~~~w~s~~-----~~dsl~~ 441 (568)
T KOG2396|consen 369 NTL-NEAREVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQ-VCSELLISWASAS-----EGDSLQE 441 (568)
T ss_pred hcc-chHhHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH-hcchhHHHHHHHh-----hccchhH
Confidence 111 11112222222356677888888877776522112222222211111110 0012233333332 222 222
Q ss_pred HH--HHHHHHHhc-cCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHH
Q 003918 442 AR--VIFDKAVQV-NYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLW 518 (786)
Q Consensus 442 A~--~~~~~al~~-~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (786)
.+ .++..+.+. -|+.. .+-..+..+..+.|-+..|+.+|.+....|| .+..++
T Consensus 442 ~~~~~Ii~a~~s~~~~~~~----tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp--------------------~sl~l~ 497 (568)
T KOG2396|consen 442 DTLDLIISALLSVIGADSV----TLKSKYLDWAYESGGYKKARKVYKSLQELPP--------------------FSLDLF 497 (568)
T ss_pred HHHHHHHHHHHHhcCCcee----ehhHHHHHHHHHhcchHHHHHHHHHHHhCCC--------------------ccHHHH
Confidence 21 222222322 23333 4556677777889999999999999999999 677888
Q ss_pred HHHHHHHHHc--CChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhc
Q 003918 519 TFYVDLEESL--GNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIF 579 (786)
Q Consensus 519 ~~~~~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 579 (786)
...+.++..+ .+...++.+|++++.....++++|..|-......|..+.+-.+|.||.+..
T Consensus 498 r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~g~~en~~~~~~ra~ktl 560 (568)
T KOG2396|consen 498 RKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKEELPLGRPENCGQIYWRAMKTL 560 (568)
T ss_pred HHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHhhccCCCcccccHHHHHHHHhh
Confidence 8888877543 358889999999999988999999999999999999999999999998864
No 46
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=7.4e-17 Score=158.50 Aligned_cols=230 Identities=15% Similarity=0.161 Sum_probs=184.3
Q ss_pred CchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCH
Q 003918 398 NPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNF 477 (786)
Q Consensus 398 ~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~ 477 (786)
++..|..+-..++ .++. -++.+...-|..-...|++++|...|+.++.-+...+ ...+.++......|+.
T Consensus 471 ~~~~aqqyad~al-n~dr-----yn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~----ealfniglt~e~~~~l 540 (840)
T KOG2003|consen 471 DFADAQQYADIAL-NIDR-----YNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCT----EALFNIGLTAEALGNL 540 (840)
T ss_pred chhHHHHHHHHHh-cccc-----cCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHH----HHHHHhcccHHHhcCH
Confidence 4556666667776 3443 4566667777777888999999999999998766555 7778888888899999
Q ss_pred HHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHH
Q 003918 478 KGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYAL 557 (786)
Q Consensus 478 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 557 (786)
++|+++|-+.-.+-. ++..+...++.+|..+.+..+|++++-++..+-|++|.++..++.
T Consensus 541 deald~f~klh~il~--------------------nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~d 600 (840)
T KOG2003|consen 541 DEALDCFLKLHAILL--------------------NNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLAD 600 (840)
T ss_pred HHHHHHHHHHHHHHH--------------------hhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHH
Confidence 999999988876665 678888899999999999999999999999999999999999999
Q ss_pred HHHHcccHHHHHHHHHHHHhhcCCCChHH--HHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHH
Q 003918 558 LLEEHKYFEDAFRVYERGVKIFKYPHVKD--IWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEE 635 (786)
Q Consensus 558 ~~~~~g~~~~A~~~~~~al~~~~~p~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~ 635 (786)
+|-+.|+-.+|..++-..-..| |-+.+ -|+. ..+. ...-.++++.+|+++.-..|+ ...-.+..+.+..
T Consensus 601 lydqegdksqafq~~ydsyryf--p~nie~iewl~--ayyi---dtqf~ekai~y~ekaaliqp~--~~kwqlmiasc~r 671 (840)
T KOG2003|consen 601 LYDQEGDKSQAFQCHYDSYRYF--PCNIETIEWLA--AYYI---DTQFSEKAINYFEKAALIQPN--QSKWQLMIASCFR 671 (840)
T ss_pred Hhhcccchhhhhhhhhhccccc--CcchHHHHHHH--HHHH---hhHHHHHHHHHHHHHHhcCcc--HHHHHHHHHHHHH
Confidence 9999999999999999888875 55544 3543 2222 223478999999999999997 4555566888999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHH
Q 003918 636 DYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIA 668 (786)
Q Consensus 636 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~ 668 (786)
+.|++.+|..+|+..-+++|.+ +.+...++.
T Consensus 672 rsgnyqka~d~yk~~hrkfped--ldclkflvr 702 (840)
T KOG2003|consen 672 RSGNYQKAFDLYKDIHRKFPED--LDCLKFLVR 702 (840)
T ss_pred hcccHHHHHHHHHHHHHhCccc--hHHHHHHHH
Confidence 9999999999999999999984 444444444
No 47
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.81 E-value=1.5e-19 Score=184.26 Aligned_cols=265 Identities=18% Similarity=0.174 Sum_probs=97.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhc--cCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccC
Q 003918 426 WVAFAKLYETYKDIANARVIFDKAVQV--NYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADG 503 (786)
Q Consensus 426 ~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 503 (786)
.+.+|.++...|++++|.+++++.+.. +|+++ .+|..++.+....++++.|+..|++++..++
T Consensus 11 ~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~----~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~----------- 75 (280)
T PF13429_consen 11 ALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDP----EYWRLLADLAWSLGDYDEAIEAYEKLLASDK----------- 75 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccc----ccccccccccccccccccccccccccccccc-----------
Confidence 346677777888888888888665443 36665 7777788877778888888888888877766
Q ss_pred ChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCC
Q 003918 504 NEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPH 583 (786)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~ 583 (786)
.++..+..++.+ ...+++++|..+++++.+.. .++..+..++.++...|+++++..+++++......|.
T Consensus 76 ---------~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~ 144 (280)
T PF13429_consen 76 ---------ANPQDYERLIQL-LQDGDPEEALKLAEKAYERD-GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPD 144 (280)
T ss_dssp -----------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T
T ss_pred ---------cccccccccccc-cccccccccccccccccccc-cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCC
Confidence 445555566666 56777888888887777654 4566777777777788888888888888765433356
Q ss_pred hHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHH
Q 003918 584 VKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMY 663 (786)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 663 (786)
++.+|..++..+. ..|+.++|+..|+++++..|+ +..++..++.++...|+.++++.+++...+..|+++.++..
T Consensus 145 ~~~~~~~~a~~~~---~~G~~~~A~~~~~~al~~~P~--~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 219 (280)
T PF13429_consen 145 SARFWLALAEIYE---QLGDPDKALRDYRKALELDPD--DPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDA 219 (280)
T ss_dssp -HHHHHHHHHHHH---HCCHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHH
T ss_pred CHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHH
Confidence 6777777654443 347788888888888888887 66777888888888888888888888777777766655544
Q ss_pred HHHHHHHHHhcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHcc
Q 003918 664 EIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQF 726 (786)
Q Consensus 664 ~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 726 (786)
.+. .+...|++++|..+|++++.. .|+ ++.+...||.++...|+.++|..++.++...
T Consensus 220 la~--~~~~lg~~~~Al~~~~~~~~~-~p~--d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 220 LAA--AYLQLGRYEEALEYLEKALKL-NPD--DPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHH--HHHHHT-HHHHHHHHHHHHHH-STT---HHHHHHHHHHHT------------------
T ss_pred HHH--Hhccccccccccccccccccc-ccc--ccccccccccccccccccccccccccccccc
Confidence 443 345678888888888888887 777 5668888888888888888888888887653
No 48
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.81 E-value=2.1e-19 Score=183.29 Aligned_cols=258 Identities=20% Similarity=0.273 Sum_probs=72.0
Q ss_pred HHHHHHHhccCHHHHHHHHHHHhc-C-CchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003918 466 EWAEMELRHKNFKGALELMRRATA-E-PSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILD 543 (786)
Q Consensus 466 ~~a~~~~~~g~~~~A~~~~~~al~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 543 (786)
.++.++.+.|++++|.+++++.+. . +| +++.+|..++.+....++++.|+.+|++++.
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~--------------------~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~ 72 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPP--------------------DDPEYWRLLADLAWSLGDYDEAIEAYEKLLA 72 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccc--------------------ccccccccccccccccccccccccccccccc
Confidence 445556666666666666654442 2 23 4556666666666666666666666666666
Q ss_pred hccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCc
Q 003918 544 LRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAV 623 (786)
Q Consensus 544 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 623 (786)
.++.++..+..++.+ ...|++++|+.+++++.+.. .++..|..++..+. ..++++++..+++++....+...+
T Consensus 73 ~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~---~~~~~l~~~l~~~~---~~~~~~~~~~~l~~~~~~~~~~~~ 145 (280)
T PF13429_consen 73 SDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERD---GDPRYLLSALQLYY---RLGDYDEAEELLEKLEELPAAPDS 145 (280)
T ss_dssp -------------------------------------------------H-HH---HTT-HHHHHHHHHHHHH-T---T-
T ss_pred ccccccccccccccc-cccccccccccccccccccc---cccchhhHHHHHHH---HHhHHHHHHHHHHHHHhccCCCCC
Confidence 665555555555555 45566666666666555532 22333433333222 225566666666665543321124
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChhHHHHHHHH
Q 003918 624 KPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKY 703 (786)
Q Consensus 624 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~ 703 (786)
..+|..+|.++.+.|+.++|+..|+++++..|+++.+....+++ ....|+.++++++++..... .|. ++.+|..+
T Consensus 146 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~--li~~~~~~~~~~~l~~~~~~-~~~--~~~~~~~l 220 (280)
T PF13429_consen 146 ARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWL--LIDMGDYDEAREALKRLLKA-APD--DPDLWDAL 220 (280)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHH--HCTTCHHHHHHHHHHHHHHH--HT--SCCHCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH--HHHCCChHHHHHHHHHHHHH-CcC--HHHHHHHH
Confidence 55666666666666666666666666666666544433333332 23455566655555555554 333 23355566
Q ss_pred HHHHHHcCChHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003918 704 AELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLR 757 (786)
Q Consensus 704 ~~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~G~~~~a~~~~~ 757 (786)
|.++...|++++|..+|++++.. +|+ +......+++.+...|+.++|.++.+
T Consensus 221 a~~~~~lg~~~~Al~~~~~~~~~-~p~-d~~~~~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 221 AAAYLQLGRYEEALEYLEKALKL-NPD-DPLWLLAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHH-STT--HHHHHHHHHHHT-------------
T ss_pred HHHhccccccccccccccccccc-ccc-cccccccccccccccccccccccccc
Confidence 66666666666666666666654 455 45566666666666666666655553
No 49
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=99.80 E-value=1.5e-14 Score=149.64 Aligned_cols=434 Identities=17% Similarity=0.242 Sum_probs=283.3
Q ss_pred HHHHhhCCCChHhHHHH-------------HHHHH-cCChhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccCCCCCch
Q 003918 17 EEELLRNPFSLKLWWRY-------------LVAKR-EAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHP 82 (786)
Q Consensus 17 ~~~l~~~p~~~~~w~~~-------------~~~~~-~~~~~~~~~~~~~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~ 82 (786)
...+.++|++.+.|-.. +.... ......++.+|...|..+|.+.+.|..|+.++.+. |
T Consensus 22 n~~~~~~p~~~~~we~~~~~~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~kl--------g 93 (577)
T KOG1258|consen 22 NTSLTKYPDSLDYWEILSNDSLDFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKL--------G 93 (577)
T ss_pred chhhhhCcchhhHhhccccchhcccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHh--------h
Confidence 44666666666665554 32211 23457889999999999999999999999999987 8
Q ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHc-CCcHHHHHHHHHHHHhhCCCCc-chhhHHHHHHHHHhcCCChHHHHH
Q 003918 83 EYETLNNTFERALVTMHKMPRIWIMYLETLTS-QKFITKARRTFDRALCALPVTQ-HDRIWEIYLRFVEQEGIPIETSLR 160 (786)
Q Consensus 83 ~~~~A~~~~~~al~~~p~~~~~w~~~~~~~~~-~~~~~~A~~~~~~al~~~p~~~-~~~~w~~~~~~~~~~~~~~~~A~~ 160 (786)
..+.+.++|+|++...|.++.+|+.|..+... .++....++.|++|+...+... +..+|..|+.++..+++. .....
T Consensus 94 ~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~-k~v~~ 172 (577)
T KOG1258|consen 94 NAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSW-KRVAN 172 (577)
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccH-HHHHH
Confidence 99999999999999999999999999999986 4778889999999999998763 689999999999989999 99999
Q ss_pred HHHHHHccCCCCH-HHHHHHHH----h-----cCCHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHhcccccccC
Q 003918 161 VYRRYLKYDPSHI-EDFIEFLV----K-----SKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISG 230 (786)
Q Consensus 161 ~~~~~l~~~p~~~-~~~~~~~~----~-----~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (786)
+|+|.++ .|... ..+..-+. . .-..+++.+.-....+. ....+.+
T Consensus 173 iyeRile-iP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~--------------------~~~~~~~---- 227 (577)
T KOG1258|consen 173 IYERILE-IPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAER--------------------SKITHSQ---- 227 (577)
T ss_pred HHHHHHh-hhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhh--------------------hhccccc----
Confidence 9999998 77654 11111111 0 01112211111111000 0000000
Q ss_pred CcHHHHHHhhhhccCchhHHHHHHHHHHHHhhccHHHHHHHHHHHhhccCchhcHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 003918 231 LNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLS 310 (786)
Q Consensus 231 ~~~~~~~~~~~~~~p~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (786)
..+ ..++.++.... ...+..+++.....+.+... ..+|......+
T Consensus 228 ~~~-e~~~~~v~~~~--------------~~s~~l~~~~~~l~~~~~~~------~~~~~~s~~~~-------------- 272 (577)
T KOG1258|consen 228 EPL-EELEIGVKDST--------------DPSKSLTEEKTILKRIVSIH------EKVYQKSEEEE-------------- 272 (577)
T ss_pred Chh-HHHHHHHhhcc--------------CccchhhHHHHHHHHHHHHH------HHHHHhhHhHH--------------
Confidence 000 01111111100 01122333333333322110 01111111110
Q ss_pred CcccccccccCCcchhhhHhhhhhhHHHHHHhHhcccccCccchHHHHHHHHHhhhhhchhhhhhhhhhcCCCCHHHHHH
Q 003918 311 VEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHR 390 (786)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~ 390 (786)
T Consensus 273 -------------------------------------------------------------------------------- 272 (577)
T KOG1258|consen 273 -------------------------------------------------------------------------------- 272 (577)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhcCCchhHHHHHHHHHh----ccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHH
Q 003918 391 RVKIFEGNPTKQILTYTEAVR----TVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCE 466 (786)
Q Consensus 391 ~~~~~~~~~~~a~~~~~~al~----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 466 (786)
+.+..|+..++ .+.|. .......|..+..+....|+++...-.|++++-...... .+|..
T Consensus 273 ----------~kr~~fE~~IkrpYfhvkpl--~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~----efWik 336 (577)
T KOG1258|consen 273 ----------EKRWGFEEGIKRPYFHVKPL--DQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYD----EFWIK 336 (577)
T ss_pred ----------HHHHhhhhhccccccccCcc--cHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhH----HHHHH
Confidence 01111222221 11110 113467888888888899999999999999887766665 88999
Q ss_pred HHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcc
Q 003918 467 WAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRI 546 (786)
Q Consensus 467 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p 546 (786)
|+......|+.+-|..++.++.++... ..+.+...++.++...|+++.|+.++++..+..|
T Consensus 337 y~~~m~~~~~~~~~~~~~~~~~~i~~k-------------------~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~p 397 (577)
T KOG1258|consen 337 YARWMESSGDVSLANNVLARACKIHVK-------------------KTPIIHLLEARFEESNGNFDDAKVILQRIESEYP 397 (577)
T ss_pred HHHHHHHcCchhHHHHHHHhhhhhcCC-------------------CCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCC
Confidence 998888888888888888888776431 4567777788888888999999999999988888
Q ss_pred CCHHHHHHHHHHHHHcccHHHHH---HHHHHHHhhcCCCCh-HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccC
Q 003918 547 ATPQIIINYALLLEEHKYFEDAF---RVYERGVKIFKYPHV-KDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADA 622 (786)
Q Consensus 547 ~~~~~~~~~~~~~~~~g~~~~A~---~~~~~al~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 622 (786)
+...+-...+.++.++|+.+.+. +++.....--.++.- ......++..... -.++.+.|+.++.++++..|+
T Consensus 398 g~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~--i~~d~~~a~~~l~~~~~~~~~-- 473 (577)
T KOG1258|consen 398 GLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK--IREDADLARIILLEANDILPD-- 473 (577)
T ss_pred chhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH--HhcCHHHHHHHHHHhhhcCCc--
Confidence 88888888888888899888887 444433332111211 1233333322221 136789999999999999998
Q ss_pred cHHHHHHHHHHHHHcC
Q 003918 623 VKPLYLQYAKLEEDYG 638 (786)
Q Consensus 623 ~~~~~~~~a~~~~~~g 638 (786)
+..+|..+..+....+
T Consensus 474 ~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 474 CKVLYLELIRFELIQP 489 (577)
T ss_pred cHHHHHHHHHHHHhCC
Confidence 7788888888887655
No 50
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=4.4e-15 Score=151.15 Aligned_cols=426 Identities=14% Similarity=0.096 Sum_probs=277.7
Q ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcHHHHHHHHHHH------HhhCCCC-c----ch------------
Q 003918 82 PEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRA------LCALPVT-Q----HD------------ 138 (786)
Q Consensus 82 ~~~~~A~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~~~A~~~~~~a------l~~~p~~-~----~~------------ 138 (786)
++++.|..+..+- +..-.+......++..+.+.+.++.|..++.++ +..+|.+ . ..
T Consensus 63 ~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~es 141 (611)
T KOG1173|consen 63 RQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLES 141 (611)
T ss_pred hHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchh
Confidence 6677776666443 334455555666666666777777877777743 1112211 0 00
Q ss_pred hhHHHHHHHHHhcCCChHHHHHHHHHHHccCCCCHHHHHHHHHhcCCHHHHHHHHHHHhcCCCccccCCCcchHHHHHHH
Q 003918 139 RIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELC 218 (786)
Q Consensus 139 ~~w~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 218 (786)
.+-...+.++....+. ++|+..|.+++..++.+.+++..+-.. ..-.+.+.++-+.+.+ +. .....+......+.
T Consensus 142 sic~lRgk~y~al~n~-~~ar~~Y~~Al~~D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~-~a-~~~~ed~e~l~~ly 216 (611)
T KOG1173|consen 142 SICYLRGKVYVALDNR-EEARDKYKEALLADAKCFEAFEKLVSA--HMLTAQEEFELLESLD-LA-MLTKEDVERLEILY 216 (611)
T ss_pred ceeeeeeehhhhhccH-HHHHHHHHHHHhcchhhHHHHHHHHHH--HhcchhHHHHHHhccc-HH-hhhhhHHHHHHHHH
Confidence 1111223344445556 899999999999999998765422211 0000111111111000 00 00001111122222
Q ss_pred HHHh-cccccccCCcHHHHHHhhhhccCchhHHHHHHHHHHHHhhccHHHHHHHHHHHhhccCchhcHHHHHHHHHHHHH
Q 003918 219 DLLT-THATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEE 297 (786)
Q Consensus 219 ~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 297 (786)
.+.. ++-+.......+ +..+-....+ .++....++.+...+++.+..++.+..++..|-......+..+
T Consensus 217 el~~~k~~n~~~~~r~~---~~sl~~l~~~-~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia------ 286 (611)
T KOG1173|consen 217 ELKLCKNRNEESLTRNE---DESLIGLAEN-LDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIA------ 286 (611)
T ss_pred HhhhhhhccccccccCc---hhhhhhhhhc-HHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHH------
Confidence 1111 000000000000 0111122222 6778888999999999999999999999987754433222222
Q ss_pred HHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhHhcccccCccchHHHHHHHHHhhhhhch-hhhhhh
Q 003918 298 IMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRP-ELANSV 376 (786)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 376 (786)
.+.+..+.+. .++.-.
T Consensus 287 ---------------------------------------------------------------~l~el~~~n~Lf~lsh~ 303 (611)
T KOG1173|consen 287 ---------------------------------------------------------------CLYELGKSNKLFLLSHK 303 (611)
T ss_pred ---------------------------------------------------------------HHHHhcccchHHHHHHH
Confidence 2222222222 122234
Q ss_pred hhhcCCCCHHHHHHHHHhhc--CCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccC
Q 003918 377 LLRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNY 454 (786)
Q Consensus 377 ~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 454 (786)
+.+..|+.+..|+..|..+- |+..+|+.+|-++. .++| ....+|+.+|..+.-.|..++|+..|.+|-+..|
T Consensus 304 LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat-~lD~-----~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~ 377 (611)
T KOG1173|consen 304 LVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKAT-TLDP-----TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMP 377 (611)
T ss_pred HHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHh-hcCc-----cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhcc
Confidence 57889999999999999885 99999999999999 6888 6889999999999999999999999999999988
Q ss_pred CChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHH
Q 003918 455 KTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLEST 534 (786)
Q Consensus 455 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 534 (786)
... .-.+.++.=+.+.++++.|.+.|.+|+.+.| .++-+...+|.+....+.+.+|
T Consensus 378 G~h----lP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P--------------------~Dplv~~Elgvvay~~~~y~~A 433 (611)
T KOG1173|consen 378 GCH----LPSLYLGMEYMRTNNLKLAEKFFKQALAIAP--------------------SDPLVLHELGVVAYTYEEYPEA 433 (611)
T ss_pred CCc----chHHHHHHHHHHhccHHHHHHHHHHHHhcCC--------------------CcchhhhhhhheeehHhhhHHH
Confidence 875 2233344455678999999999999999999 7888888889888888999999
Q ss_pred HHHHHHHHhhcc-------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHH
Q 003918 535 RAVYERILDLRI-------ATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERA 607 (786)
Q Consensus 535 ~~~~~~al~~~p-------~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A 607 (786)
...|+.++..-+ .-...+.++|.++.+.+.+++|+..|++++.. .|.++..+... +..+.. .|+++.|
T Consensus 434 ~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--~~k~~~~~asi-g~iy~l--lgnld~A 508 (611)
T KOG1173|consen 434 LKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--SPKDASTHASI-GYIYHL--LGNLDKA 508 (611)
T ss_pred HHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--CCCchhHHHHH-HHHHHH--hcChHHH
Confidence 999999995421 12346888999999999999999999999987 68887777653 334433 3789999
Q ss_pred HHHHHHHHhhCCcc
Q 003918 608 RELFENAVETAPAD 621 (786)
Q Consensus 608 ~~~~~~al~~~p~~ 621 (786)
++.|.+++-+.|++
T Consensus 509 id~fhKaL~l~p~n 522 (611)
T KOG1173|consen 509 IDHFHKALALKPDN 522 (611)
T ss_pred HHHHHHHHhcCCcc
Confidence 99999999998884
No 51
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.79 E-value=8.6e-15 Score=157.45 Aligned_cols=595 Identities=10% Similarity=-0.030 Sum_probs=336.1
Q ss_pred cCChhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcH
Q 003918 39 EAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFI 118 (786)
Q Consensus 39 ~~~~~~~~~~~~~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~ 118 (786)
+.+...+...|-++++.+|.-...|..++.+.+.. .+...|.+.|++|.+++|.+...|-..+..+.+..+.
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~--------~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~w 542 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDS--------DDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTW 542 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH--------HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccH
Confidence 34456666666777777777777777777766654 4666677777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhhCCCCcchhhHHHHHHHHHhcCCChHHHHHHHHHHHccCCCCHH---HHHHHHHhcCCHHHHHHHHHH
Q 003918 119 TKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIE---DFIEFLVKSKLWQEAAERLAS 195 (786)
Q Consensus 119 ~~A~~~~~~al~~~p~~~~~~~w~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~~~~~~~~g~~~~A~~~~~~ 195 (786)
+.|..+.-++-+..|......-|...+-.+.+.++. ..|+.-|+.++..+|.+.+ .+.+.|.++|++..|.++|.+
T Consensus 543 e~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~-h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~k 621 (1238)
T KOG1127|consen 543 EEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNL-HGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTK 621 (1238)
T ss_pred HHHHHHHHHHhhhchHHHHHhhhhhccccccCccch-hhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhh
Confidence 777666666555555322233344444444455556 6677777777777776653 344666677777777777666
Q ss_pred HhcCCCccccCCCcchHHHHHHHHHHhcccccccCCcHHHHHHhhhhccCchhHHHHHHHHHHHHhhccHHHHHHHHHHH
Q 003918 196 VLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEG 275 (786)
Q Consensus 196 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~y~~~g~~~~A~~~~~~a 275 (786)
+... .|.+ --..+..|-+....|+|.+|...+...
T Consensus 622 As~L--------------------------------------------rP~s-~y~~fk~A~~ecd~GkYkeald~l~~i 656 (1238)
T KOG1127|consen 622 ASLL--------------------------------------------RPLS-KYGRFKEAVMECDNGKYKEALDALGLI 656 (1238)
T ss_pred hHhc--------------------------------------------CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 5421 1211 112233344556667777777777766
Q ss_pred hhccCchhc-HHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhHh-----ccccc
Q 003918 276 MMTVVTVRD-FSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVL-----NGFWL 349 (786)
Q Consensus 276 l~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 349 (786)
+.....-.. ...+-..++..........+.. .+..-+|+-+. -....
T Consensus 657 i~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~---------------------------kavd~~eksie~f~~~l~h~~ 709 (1238)
T KOG1127|consen 657 IYAFSLERTGQNGLAESVIRDAKDSAITGFQK---------------------------KAVDFFEKSIESFIVSLIHSL 709 (1238)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhh---------------------------hhhHHHHHHHHHHHHHHHHhh
Confidence 653211100 0001111111110000000000 00000111000 00000
Q ss_pred CccchHHHHHHHHHhhhhhchhhhhhhhhhcCCCCHHHHHHH---HHhhc-C---Cch---hHHHHHHHHHhccCCCccC
Q 003918 350 HDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRR---VKIFE-G---NPT---KQILTYTEAVRTVDPMKAV 419 (786)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~---~~~~~-~---~~~---~a~~~~~~al~~~~~~~~~ 419 (786)
.+....|.-...- ........|+-+...+.- .++.. + ..+ -+.+.+-..++..
T Consensus 710 ~~~~~~Wi~asda-----------c~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~------ 772 (1238)
T KOG1127|consen 710 QSDRLQWIVASDA-----------CYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLA------ 772 (1238)
T ss_pred hhhHHHHHHHhHH-----------HHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHh------
Confidence 0000011100000 000011124422222111 11111 1 112 2344444444321
Q ss_pred CCcHHHHHHHHHHHHH--------cCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCC
Q 003918 420 GKPHTLWVAFAKLYET--------YKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEP 491 (786)
Q Consensus 420 ~~~~~~~~~~a~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 491 (786)
..+..|+.+|.-|.+ ..+...|+..+.++++...++. ..|..++-+ ...|++.-|...|-+.+...
T Consensus 773 -~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~----~~WnaLGVl-sg~gnva~aQHCfIks~~se 846 (1238)
T KOG1127|consen 773 -IHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNE----GLWNALGVL-SGIGNVACAQHCFIKSRFSE 846 (1238)
T ss_pred -hccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccH----HHHHHHHHh-hccchhhhhhhhhhhhhhcc
Confidence 125578888776654 2334589999999999999987 999999887 66789999999999999999
Q ss_pred chHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHH
Q 003918 492 SVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRV 571 (786)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~ 571 (786)
| .+...|..++.++....+++.|..+|.++..++|.+...|...+.+....|+.-++..+
T Consensus 847 p--------------------~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~l 906 (1238)
T KOG1127|consen 847 P--------------------TCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLIL 906 (1238)
T ss_pred c--------------------cchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHH
Confidence 9 78899999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHhhcCCC---ChHHHHHHHHHHHHHHhCCCChH----------HHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcC
Q 003918 572 YERGVKIFKYP---HVKDIWVTYLSKFVKRYGKTKLE----------RARELFENAVETAPADAVKPLYLQYAKLEEDYG 638 (786)
Q Consensus 572 ~~~al~~~~~p---~~~~~~~~~~~~~~~~~~~~~~~----------~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g 638 (786)
|.-........ .....|.. ..+.+..+|+++ .|--..++.+...|+ +...+...+......+
T Consensus 907 faHs~el~~~~gka~~f~Yw~c---~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~--~~fAy~~~gstlEhL~ 981 (1238)
T KOG1127|consen 907 FAHSDELCSKEGKAKKFQYWLC---ATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQ--LCFAYAANGSTLEHLE 981 (1238)
T ss_pred HHhhHHhhccccccchhhHHHH---HHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcc--hhHHHHHHHhHHHHHH
Confidence 87643331011 11223332 112222334443 444556666677888 6678888888888888
Q ss_pred CHHHHHHHHHHHHhcCCC---Cchhh-HHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChH
Q 003918 639 LAKRAMKVYDQATKAVPN---HEKLG-MYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEID 714 (786)
Q Consensus 639 ~~~~A~~~~~~~l~~~p~---~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~ 714 (786)
.+..|...+.+.+-..-. ..... .-..+...+...|++++|..-+.. .|...+. -.........-.|+++
T Consensus 982 ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~-----~~~evdE-di~gt~l~lFfkndf~ 1055 (1238)
T KOG1127|consen 982 EYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWK-----EWMEVDE-DIRGTDLTLFFKNDFF 1055 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcc-----cchhHHH-HHhhhhHHHHHHhHHH
Confidence 888888888776532110 00111 112222333456677766443322 2221111 1111111112357899
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHhhhhh
Q 003918 715 RARGIYVFASQFADPRSDTEFWNRWH-EFEVNHGNEDTFREMLRIKRSVSASYSQ 768 (786)
Q Consensus 715 ~A~~~~~~al~~~~p~~~~~~~~~~~-~~~~~~G~~~~a~~~~~~~~~~~~~~~~ 768 (786)
++.+.|++|+.+.+.+.+..+...-+ .-+...|..+.|...+-....+++....
T Consensus 1056 ~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls~~~~~ 1110 (1238)
T KOG1127|consen 1056 SSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLSKVQAS 1110 (1238)
T ss_pred HHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhCccchh
Confidence 99999999998865554443444433 3355566777777777555555444433
No 52
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=2.4e-15 Score=152.97 Aligned_cols=275 Identities=11% Similarity=0.081 Sum_probs=231.5
Q ss_pred CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhh
Q 003918 421 KPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVA 500 (786)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 500 (786)
+++++....++.+...++|.+..++++..++.+|-+. ..+......+...|+..+-.-+-.+.++..|
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~----~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP-------- 309 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHL----PCLPLHIACLYELGKSNKLFLLSHKLVDLYP-------- 309 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCc----chHHHHHHHHHHhcccchHHHHHHHHHHhCC--------
Confidence 5788999999999999999999999999999999876 4444444466678888777777788889999
Q ss_pred ccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcC
Q 003918 501 ADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFK 580 (786)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~ 580 (786)
+.+..|+..|..|...|++++|+..|-++..++|....+|+.+|..+.-.|.-++|+..|.+|-+.++
T Consensus 310 ------------~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~ 377 (611)
T KOG1173|consen 310 ------------SKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMP 377 (611)
T ss_pred ------------CCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhcc
Confidence 78899999999999999999999999999999999999999999999999999999999999999863
Q ss_pred CCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-ch
Q 003918 581 YPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNH-EK 659 (786)
Q Consensus 581 ~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~ 659 (786)
--.-|.++.. .-+. ..+++.-|...|.+|+.+.|. ++.+...+|.+.+..+.+.+|...|+.++...+.. ++
T Consensus 378 G~hlP~LYlg---mey~--~t~n~kLAe~Ff~~A~ai~P~--Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e 450 (611)
T KOG1173|consen 378 GCHLPSLYLG---MEYM--RTNNLKLAEKFFKQALAIAPS--DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNE 450 (611)
T ss_pred CCcchHHHHH---HHHH--HhccHHHHHHHHHHHHhcCCC--cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccc
Confidence 3233344332 2222 357899999999999999999 67888899999999999999999999999544432 11
Q ss_pred h----hHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCC
Q 003918 660 L----GMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPR 730 (786)
Q Consensus 660 ~----~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~ 730 (786)
. ..+..++..+.+.+.+++|+..|++++.. .|. ++..+-..|-++...|+++.|...|.+++.+ .|+
T Consensus 451 ~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k--~~~~~asig~iy~llgnld~Aid~fhKaL~l-~p~ 521 (611)
T KOG1173|consen 451 KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPK--DASTHASIGYIYHLLGNLDKAIDHFHKALAL-KPD 521 (611)
T ss_pred ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCC--chhHHHHHHHHHHHhcChHHHHHHHHHHHhc-CCc
Confidence 1 23444455567889999999999999999 888 5668888899999999999999999999998 787
No 53
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.79 E-value=6.3e-16 Score=165.82 Aligned_cols=298 Identities=11% Similarity=0.007 Sum_probs=231.2
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhH
Q 003918 428 AFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPV 507 (786)
Q Consensus 428 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 507 (786)
.-|......|+++.|.+.+.++.+..|+.. ..+...++...+.|+++.|.+++.++.+..|
T Consensus 89 ~~glla~~~g~~~~A~~~l~~~~~~~~~~~----~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p--------------- 149 (409)
T TIGR00540 89 EEALLKLAEGDYAKAEKLIAKNADHAAEPV----LNLIKAAEAAQQRGDEARANQHLEEAAELAG--------------- 149 (409)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHhhcCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---------------
Confidence 334455678999999999999999888765 6667778888999999999999999988777
Q ss_pred HHHhhhc-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHH
Q 003918 508 QMKLHKS-LRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKD 586 (786)
Q Consensus 508 ~~~~~~~-~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~ 586 (786)
++ ..+...++.+....|+++.|+..++++++..|+++.++..++.++...|++++|.+.+.+..+.. +.++.
T Consensus 150 -----~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~--~~~~~ 222 (409)
T TIGR00540 150 -----NDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG--LFDDE 222 (409)
T ss_pred -----cCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC--CCCHH
Confidence 33 24555568888899999999999999999999999999999999999999999999999999862 22222
Q ss_pred HHHH-HHHHHHHHhCCCChHHHHHHHHHHHhhCCcc--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhh--
Q 003918 587 IWVT-YLSKFVKRYGKTKLERARELFENAVETAPAD--AVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLG-- 661 (786)
Q Consensus 587 ~~~~-~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~-- 661 (786)
.... ........+..+..+++.+.+.++.+..|.. .+..++..++..+...|++++|.+.++++++..|++....
T Consensus 223 ~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~ 302 (409)
T TIGR00540 223 EFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP 302 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH
Confidence 1110 0001100011122344566788888888742 2578999999999999999999999999999999875432
Q ss_pred HHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHH--HHHccCCCCCCHHHHHHH
Q 003918 662 MYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYV--FASQFADPRSDTEFWNRW 739 (786)
Q Consensus 662 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~--~al~~~~p~~~~~~~~~~ 739 (786)
....+.. ...++.+.+++.++++++. .|++....+...+|.++.+.|++++|+++|+ .+++. +|+ ...+..+
T Consensus 303 ~l~~~~~--l~~~~~~~~~~~~e~~lk~-~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~-~p~--~~~~~~L 376 (409)
T TIGR00540 303 LCLPIPR--LKPEDNEKLEKLIEKQAKN-VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKE-QLD--ANDLAMA 376 (409)
T ss_pred HHHHhhh--cCCCChHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc-CCC--HHHHHHH
Confidence 3333333 2347788999999999999 8984322688899999999999999999999 56665 676 4446699
Q ss_pred HHHHHHcCCHHHHHHHHH
Q 003918 740 HEFEVNHGNEDTFREMLR 757 (786)
Q Consensus 740 ~~~~~~~G~~~~a~~~~~ 757 (786)
+.++.+.|+.++|.++.+
T Consensus 377 a~ll~~~g~~~~A~~~~~ 394 (409)
T TIGR00540 377 ADAFDQAGDKAEAAAMRQ 394 (409)
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 999999999999999885
No 54
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.78 E-value=7.5e-16 Score=145.94 Aligned_cols=316 Identities=15% Similarity=0.165 Sum_probs=239.3
Q ss_pred HHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhh
Q 003918 433 YETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLH 512 (786)
Q Consensus 433 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 512 (786)
+.-.++.++|+..|-.+++.+|.+. ++.+.+++++.+.|..++|+++-+..+..|.-.. .
T Consensus 45 fLLs~Q~dKAvdlF~e~l~~d~~t~----e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~----------------~ 104 (389)
T COG2956 45 FLLSNQPDKAVDLFLEMLQEDPETF----EAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTF----------------E 104 (389)
T ss_pred HHhhcCcchHHHHHHHHHhcCchhh----HHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCch----------------H
Confidence 3345677888888888888888777 7788888888888888888888777776654110 0
Q ss_pred hcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHH
Q 003918 513 KSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYL 592 (786)
Q Consensus 513 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~ 592 (786)
....+...++.=|...|-+++|..+|........--+.+.-.+..+|....++++|+++-++..++-+.+....+-..|.
T Consensus 105 qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyC 184 (389)
T COG2956 105 QRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYC 184 (389)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHH
Confidence 12345567777788888899999999888775444567788888999999999999999999988865666666666565
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHH
Q 003918 593 SKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAE 672 (786)
Q Consensus 593 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~ 672 (786)
......+...+.+.|+..++++++.+|+ ++.+-+.+|+++...|++++|++.++++++.+|.- -..+...+..+|.+
T Consensus 185 ELAq~~~~~~~~d~A~~~l~kAlqa~~~--cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~y-l~evl~~L~~~Y~~ 261 (389)
T COG2956 185 ELAQQALASSDVDRARELLKKALQADKK--CVRASIILGRVELAKGDYQKAVEALERVLEQNPEY-LSEVLEMLYECYAQ 261 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhhCcc--ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHH-HHHHHHHHHHHHHH
Confidence 5444445567899999999999999999 78888999999999999999999999999999863 22344555566778
Q ss_pred hcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003918 673 IFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTF 752 (786)
Q Consensus 673 ~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~G~~~~a 752 (786)
.|+..+.+..+.++++. .++ +.+-+.+++......-.+.|..+..+-+.. .|+ ......++++...-++.-.+
T Consensus 262 lg~~~~~~~fL~~~~~~-~~g---~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r-~Pt--~~gf~rl~~~~l~daeeg~~ 334 (389)
T COG2956 262 LGKPAEGLNFLRRAMET-NTG---ADAELMLADLIELQEGIDAAQAYLTRQLRR-KPT--MRGFHRLMDYHLADAEEGRA 334 (389)
T ss_pred hCCHHHHHHHHHHHHHc-cCC---ccHHHHHHHHHHHhhChHHHHHHHHHHHhh-CCc--HHHHHHHHHhhhccccccch
Confidence 99999999999999998 776 446677788777777788888888888876 687 66777777777665544334
Q ss_pred HHHHHHHHHHHhhh---------hhhHHHHHhhhhh
Q 003918 753 REMLRIKRSVSASY---------SQVIYFSFLLLLW 779 (786)
Q Consensus 753 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~ 779 (786)
++-+...+.+-++. .+|+| .+.++.|
T Consensus 335 k~sL~~lr~mvge~l~~~~~YRC~~CGF-~a~~l~W 369 (389)
T COG2956 335 KESLDLLRDMVGEQLRRKPRYRCQNCGF-TAHTLYW 369 (389)
T ss_pred hhhHHHHHHHHHHHHhhcCCceecccCC-cceeeee
Confidence 44333333333322 88999 7788877
No 55
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=99.78 E-value=1.5e-14 Score=142.73 Aligned_cols=265 Identities=12% Similarity=0.125 Sum_probs=189.8
Q ss_pred HHHHHHHHHHHhcc------C-HHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHH
Q 003918 462 SIWCEWAEMELRHK------N-FKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLEST 534 (786)
Q Consensus 462 ~~~~~~a~~~~~~g------~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 534 (786)
.-|+.+...+..+| - ..+.--++++++.-.+ -++.+|+.+.......++-++|
T Consensus 262 S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~--------------------~~~evw~dys~Y~~~isd~q~a 321 (660)
T COG5107 262 SNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFY--------------------YAEEVWFDYSEYLIGISDKQKA 321 (660)
T ss_pred chhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhh--------------------hhHHHHHHHHHHHhhccHHHHH
Confidence 34788877776543 1 2233345677777666 5789999999888888999999
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHH--HHHHHHHhCCCChHHHHHHHH
Q 003918 535 RAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTY--LSKFVKRYGKTKLERARELFE 612 (786)
Q Consensus 535 ~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~--~~~~~~~~~~~~~~~A~~~~~ 612 (786)
+...++++...| .+.+.++..|...++.+....+|++++... -..| +..-......|+++...+.+-
T Consensus 322 l~tv~rg~~~sp---sL~~~lse~yel~nd~e~v~~~fdk~~q~L--------~r~ys~~~s~~~s~~D~N~e~~~Ell~ 390 (660)
T COG5107 322 LKTVERGIEMSP---SLTMFLSEYYELVNDEEAVYGCFDKCTQDL--------KRKYSMGESESASKVDNNFEYSKELLL 390 (660)
T ss_pred HHHHHhcccCCC---chheeHHHHHhhcccHHHHhhhHHHHHHHH--------HHHHhhhhhhhhccccCCccccHHHHH
Confidence 988888887555 477788888888888888888999888742 1111 111111111234433333333
Q ss_pred HHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCC
Q 003918 613 NAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLP 692 (786)
Q Consensus 613 ~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p 692 (786)
+-++ . -..+|+.+...-.+...++.|+.+|-++-+.---..++.+..+++.++ ..|+..-|-.+|+-.+.. .|
T Consensus 391 kr~~---k--~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~-f~ 463 (660)
T COG5107 391 KRIN---K--LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLK-FP 463 (660)
T ss_pred HHHh---h--hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHh-CC
Confidence 2222 1 245777777777788889999999998876442345777888888864 578999999999999999 88
Q ss_pred ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh
Q 003918 693 DKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASY 766 (786)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~G~~~~a~~~~~~~~~~~~~~ 766 (786)
+ ++..-..|..++...++-..|+.+|+.++.....+.-...|..|+.++...|++..+..+-+.++.+-.+.
T Consensus 464 d--~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 464 D--STLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred C--chHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 8 56677888999999999999999999888753222126899999999999999999988876666654444
No 56
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.76 E-value=3.5e-15 Score=160.08 Aligned_cols=295 Identities=10% Similarity=0.054 Sum_probs=229.5
Q ss_pred HHHHhhcCCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHH
Q 003918 390 RRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAE 469 (786)
Q Consensus 390 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~ 469 (786)
++..+.+|+++.|.+.+.++.+ ..| .....+...|......|+++.|...|.++.+..|++. ..+...++.
T Consensus 91 glla~~~g~~~~A~~~l~~~~~-~~~-----~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~---l~~~~~~a~ 161 (409)
T TIGR00540 91 ALLKLAEGDYAKAEKLIAKNAD-HAA-----EPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDN---ILVEIARTR 161 (409)
T ss_pred HHHHHhCCCHHHHHHHHHHHhh-cCC-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCc---hHHHHHHHH
Confidence 3444556999999999999885 444 4566777888999999999999999999999888773 135566799
Q ss_pred HHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCH
Q 003918 470 MELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATP 549 (786)
Q Consensus 470 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 549 (786)
+....|+++.|...+++.++..| +++.++..++.++...|+++.|...+.+.++..+.++
T Consensus 162 l~l~~~~~~~Al~~l~~l~~~~P--------------------~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~ 221 (409)
T TIGR00540 162 ILLAQNELHAARHGVDKLLEMAP--------------------RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDD 221 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC--------------------CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH
Confidence 99999999999999999999999 7889999999999999999999999999998755555
Q ss_pred HHHHH----HHHHHHHcccHHHHHHHHHHHHhhcCCC----ChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCcc
Q 003918 550 QIIIN----YALLLEEHKYFEDAFRVYERGVKIFKYP----HVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPAD 621 (786)
Q Consensus 550 ~~~~~----~~~~~~~~g~~~~A~~~~~~al~~~~~p----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 621 (786)
..... ...-....+..+++.+.+.++... .| +++.++..++..+. ..|++++|...++++++..|++
T Consensus 222 ~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~--~p~~~~~~~~l~~~~a~~l~---~~g~~~~A~~~l~~~l~~~pd~ 296 (409)
T TIGR00540 222 EEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN--QPRHRRHNIALKIALAEHLI---DCDDHDSAQEIIFDGLKKLGDD 296 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH--CCHHHhCCHHHHHHHHHHHH---HCCChHHHHHHHHHHHhhCCCc
Confidence 43321 111113334445555677777765 35 58888988776555 4589999999999999999984
Q ss_pred CcHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc--hhhHHHHHHHHHHHhcChhHHHHHHH--HHHHhcCCChh
Q 003918 622 AVKP--LYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHE--KLGMYEIYIARAAEIFGVPKTREIYE--QAIESGLPDKD 695 (786)
Q Consensus 622 ~~~~--~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~--~al~~~~p~~~ 695 (786)
.... .+..++. ...++.+.+.+.+++.++..|+++ .+....+++. .+.|++++|+++|+ .+++. .|++
T Consensus 297 ~~~~~~~l~~~~~--l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~--~~~~~~~~A~~~le~a~a~~~-~p~~- 370 (409)
T TIGR00540 297 RAISLPLCLPIPR--LKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLL--MKHGEFIEAADAFKNVAACKE-QLDA- 370 (409)
T ss_pred ccchhHHHHHhhh--cCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHH--HHcccHHHHHHHHHHhHHhhc-CCCH-
Confidence 3211 2222322 335888999999999999999988 4444555555 58999999999999 56667 7873
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHcc
Q 003918 696 VKAMCLKYAELEKSLGEIDRARGIYVFASQF 726 (786)
Q Consensus 696 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 726 (786)
..+..++.++.+.|+.++|.++|++++..
T Consensus 371 --~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 371 --NDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34669999999999999999999998764
No 57
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.73 E-value=1.3e-15 Score=168.70 Aligned_cols=252 Identities=22% Similarity=0.386 Sum_probs=212.9
Q ss_pred hHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcC-CchHHhhhhhccCChhHHHHhhhcHHHH
Q 003918 440 ANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAE-PSVEVRRRVAADGNEPVQMKLHKSLRLW 518 (786)
Q Consensus 440 ~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (786)
.+...-|++.+..+|++. ..|+.|..+.++.++.+.|++++++|+.. ++.+- ..-.++|
T Consensus 1441 pesaeDferlvrssPNSS----i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REe----------------eEKLNiW 1500 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNSS----ILWIRYMAFHLELSEIEKARKIAERALKTINFREE----------------EEKLNIW 1500 (1710)
T ss_pred CcCHHHHHHHHhcCCCcc----hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchh----------------HHHHHHH
Confidence 345567888899999997 99999999999999999999999999964 33110 0245899
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHH
Q 003918 519 TFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKR 598 (786)
Q Consensus 519 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~ 598 (786)
..|.+++...|.-+...+.|++|.+.+. .-.++..+..+|...+++++|.++++.+++.++ .....|..|++++.
T Consensus 1501 iA~lNlEn~yG~eesl~kVFeRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl-- 1575 (1710)
T KOG1070|consen 1501 IAYLNLENAYGTEESLKKVFERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLL-- 1575 (1710)
T ss_pred HHHHhHHHhhCcHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHh--
Confidence 9999999999999999999999998632 336788999999999999999999999999874 66789999999887
Q ss_pred hCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhH
Q 003918 599 YGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPK 678 (786)
Q Consensus 599 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~ 678 (786)
.+++-+.|+.++++|++..|...+..+...+|.++++.|+.++++.+|+..+..+|. ..++|..|++++.++|+...
T Consensus 1576 -~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK--RtDlW~VYid~eik~~~~~~ 1652 (1710)
T KOG1070|consen 1576 -RQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK--RTDLWSVYIDMEIKHGDIKY 1652 (1710)
T ss_pred -cccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc--chhHHHHHHHHHHccCCHHH
Confidence 446779999999999999999777899999999999999999999999999999997 78899999999999999999
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHH
Q 003918 679 TREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGI 719 (786)
Q Consensus 679 A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~ 719 (786)
+|.+|++++..+.+......++-.|..++...|+-..+..+
T Consensus 1653 vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1653 VRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred HHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 99999999998666544555666666777766665444333
No 58
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.73 E-value=2e-14 Score=153.29 Aligned_cols=286 Identities=10% Similarity=0.039 Sum_probs=203.3
Q ss_pred HHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhh
Q 003918 433 YETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLH 512 (786)
Q Consensus 433 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 512 (786)
....|+++.|++...++....+ ++ ...+...+....+.|+++.|..+|.++.+.+|
T Consensus 94 a~~eGd~~~A~k~l~~~~~~~~-~p---~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~-------------------- 149 (398)
T PRK10747 94 KLAEGDYQQVEKLMTRNADHAE-QP---VVNYLLAAEAAQQRGDEARANQHLERAAELAD-------------------- 149 (398)
T ss_pred HHhCCCHHHHHHHHHHHHhccc-ch---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--------------------
Confidence 3346888888877777655322 22 13344445565888999999999999988877
Q ss_pred hcH-HHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHH--
Q 003918 513 KSL-RLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWV-- 589 (786)
Q Consensus 513 ~~~-~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~-- 589 (786)
++. ......+.++...|+++.|...++++++..|+++.+...++.+|...|++++|++++.+..+.. +.++....
T Consensus 150 ~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~--~~~~~~~~~l 227 (398)
T PRK10747 150 NDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH--VGDEEHRAML 227 (398)
T ss_pred cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC--CCCHHHHHHH
Confidence 332 2222336778888999999999999999999999999999999999999999998888888763 22222111
Q ss_pred ---HHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHH
Q 003918 590 ---TYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIY 666 (786)
Q Consensus 590 ---~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~ 666 (786)
.+...+.......+.+...++++..-...|+ ++.+...++..+...|+.++|...++++++..| ++. +...+
T Consensus 228 ~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~--~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~-~~~--l~~l~ 302 (398)
T PRK10747 228 EQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRH--QVALQVAMAEHLIECDDHDTAQQIILDGLKRQY-DER--LVLLI 302 (398)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHH--HHHHH
Confidence 1111111111122334444444444444455 577888999999999999999999999998444 332 22233
Q ss_pred HHHHHHhcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHc
Q 003918 667 IARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNH 746 (786)
Q Consensus 667 ~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~ 746 (786)
.. ...++.+++....++.++. .|+ ++...+.+|.++...|++++|++.|+++++. .|+ ...+..+...+.+.
T Consensus 303 ~~--l~~~~~~~al~~~e~~lk~-~P~--~~~l~l~lgrl~~~~~~~~~A~~~le~al~~-~P~--~~~~~~La~~~~~~ 374 (398)
T PRK10747 303 PR--LKTNNPEQLEKVLRQQIKQ-HGD--TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ-RPD--AYDYAWLADALDRL 374 (398)
T ss_pred hh--ccCCChHHHHHHHHHHHhh-CCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCC--HHHHHHHHHHHHHc
Confidence 33 2457888999999999888 888 5668888999999999999999999999987 677 45566788888999
Q ss_pred CCHHHHHHHHH
Q 003918 747 GNEDTFREMLR 757 (786)
Q Consensus 747 G~~~~a~~~~~ 757 (786)
|+.++|.++++
T Consensus 375 g~~~~A~~~~~ 385 (398)
T PRK10747 375 HKPEEAAAMRR 385 (398)
T ss_pred CCHHHHHHHHH
Confidence 99999988875
No 59
>PRK12370 invasion protein regulator; Provisional
Probab=99.73 E-value=1.7e-15 Score=168.63 Aligned_cols=251 Identities=13% Similarity=0.008 Sum_probs=196.9
Q ss_pred CChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHh---------ccCHHHHHHHHHHHhcCCchHHhhhhhccCChhH
Q 003918 437 KDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELR---------HKNFKGALELMRRATAEPSVEVRRRVAADGNEPV 507 (786)
Q Consensus 437 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~---------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 507 (786)
+++++|+..|++++..+|++. ..|..++.++.. .+++++|...++++++..|
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a----~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP--------------- 335 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSI----APYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH--------------- 335 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccH----HHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC---------------
Confidence 456899999999999999987 777777765542 3458999999999999999
Q ss_pred HHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHH
Q 003918 508 QMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDI 587 (786)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~ 587 (786)
+++.+|..++.++...|++++|...|+++++.+|+++.++..+|.++...|++++|+..++++++. +|.++..
T Consensus 336 -----~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~ 408 (553)
T PRK12370 336 -----NNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAA 408 (553)
T ss_pred -----CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhh
Confidence 788999999999999999999999999999999999999999999999999999999999999998 6887655
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHhhC-CccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHH
Q 003918 588 WVTYLSKFVKRYGKTKLERARELFENAVETA-PADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIY 666 (786)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~ 666 (786)
+...+..++ ..|++++|+..+++++... |+ +...+..+|.++...|++++|+..+.+.....|.+. ......
T Consensus 409 ~~~~~~~~~---~~g~~eeA~~~~~~~l~~~~p~--~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~--~~~~~l 481 (553)
T PRK12370 409 GITKLWITY---YHTGIDDAIRLGDELRSQHLQD--NPILLSMQVMFLSLKGKHELARKLTKEISTQEITGL--IAVNLL 481 (553)
T ss_pred HHHHHHHHH---hccCHHHHHHHHHHHHHhcccc--CHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhH--HHHHHH
Confidence 443333232 3478999999999999886 55 567788899999999999999999999877766532 222222
Q ss_pred HHHHHHhcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHcc
Q 003918 667 IARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQF 726 (786)
Q Consensus 667 ~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 726 (786)
...+...| ++|...+++.++. .... +........++.-.|+.+.+.-+ +++.+.
T Consensus 482 ~~~~~~~g--~~a~~~l~~ll~~-~~~~--~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 482 YAEYCQNS--ERALPTIREFLES-EQRI--DNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHHHhccH--HHHHHHHHHHHHH-hhHh--hcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 22333444 4788888886664 2111 11122267778888899988888 776663
No 60
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.72 E-value=2.2e-13 Score=130.01 Aligned_cols=344 Identities=12% Similarity=0.054 Sum_probs=241.4
Q ss_pred CCCHHHHHHHHHhhc--CCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhh
Q 003918 382 PHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDH 459 (786)
Q Consensus 382 p~~~~~~~~~~~~~~--~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 459 (786)
|+++.+.+.++-.+- |.-.-|+.-+.+.| .+.| +...+....|.+++++|.+++|..-|+..+..+|++...
T Consensus 69 p~~Y~aifrRaT~yLAmGksk~al~Dl~rVl-elKp-----DF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~ 142 (504)
T KOG0624|consen 69 PNNYQAIFRRATVYLAMGKSKAALQDLSRVL-ELKP-----DFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLV 142 (504)
T ss_pred chhHHHHHHHHHHHhhhcCCccchhhHHHHH-hcCc-----cHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchh
Confidence 333333344433332 55566777888888 4566 677888999999999999999999999999988865322
Q ss_pred H---------HHHHHHHHH--HHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHc
Q 003918 460 L---------ASIWCEWAE--MELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESL 528 (786)
Q Consensus 460 ~---------~~~~~~~a~--~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (786)
. ...|...-. -....|+...|+....+.+++.| -+..++...+.++...
T Consensus 143 ~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~--------------------Wda~l~~~Rakc~i~~ 202 (504)
T KOG0624|consen 143 LEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP--------------------WDASLRQARAKCYIAE 202 (504)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc--------------------chhHHHHHHHHHHHhc
Confidence 1 122222222 22457899999999999999999 6788999999999999
Q ss_pred CChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHH---------HHHHHHh
Q 003918 529 GNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYL---------SKFVKRY 599 (786)
Q Consensus 529 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~---------~~~~~~~ 599 (786)
|++..|+.-++.+-++..++.+..+..+.+++..|+.+.++..++.+++. +|++..-+-.|- .......
T Consensus 203 ~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~i 280 (504)
T KOG0624|consen 203 GEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAI 280 (504)
T ss_pred CcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998 787754333221 1112222
Q ss_pred CCCChHHHHHHHHHHHhhCCccCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChh
Q 003918 600 GKTKLERARELFENAVETAPADAV--KPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVP 677 (786)
Q Consensus 600 ~~~~~~~A~~~~~~al~~~p~~~~--~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~ 677 (786)
..+++.++.+..++.++..|.... ..+...++.++...|++.+|+....++|+..|++..+.. .....+.....|+
T Consensus 281 e~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~--dRAeA~l~dE~YD 358 (504)
T KOG0624|consen 281 EEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLC--DRAEAYLGDEMYD 358 (504)
T ss_pred hhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHH--HHHHHHhhhHHHH
Confidence 457899999999999999987321 234445677788889999999999999999998554443 3344444556899
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHHHHH---------------HcCChHHHHHHHHHHHccCCCCCCHHHHHHHHHH
Q 003918 678 KTREIYEQAIESGLPDKDVKAMCLKYAELEK---------------SLGEIDRARGIYVFASQFADPRSDTEFWNRWHEF 742 (786)
Q Consensus 678 ~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~---------------~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~ 742 (786)
.|+.-|++|.+. ++++....--+.-+.-.. +.-...+-.+.|.++.+.=.||+.. -=..--..
T Consensus 359 ~AI~dye~A~e~-n~sn~~~reGle~Akrlkkqs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFq-dEeEKKkA 436 (504)
T KOG0624|consen 359 DAIHDYEKALEL-NESNTRAREGLERAKRLKKQSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQ-DEEEKKKA 436 (504)
T ss_pred HHHHHHHHHHhc-CcccHHHHHHHHHHHHHHHHhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCcccc-CHHHHHHH
Confidence 999999999999 776543211111111111 1123455666777776654676411 11112223
Q ss_pred HHHcCCHHHHHHHHH
Q 003918 743 EVNHGNEDTFREMLR 757 (786)
Q Consensus 743 ~~~~G~~~~a~~~~~ 757 (786)
+.+.=+...|++++.
T Consensus 437 EKKFIDIAAAKEVLs 451 (504)
T KOG0624|consen 437 EKKFIDIAAAKEVLS 451 (504)
T ss_pred HHhhhhHHHHHHhhc
Confidence 444446666666664
No 61
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.72 E-value=1.9e-14 Score=153.51 Aligned_cols=291 Identities=11% Similarity=0.032 Sum_probs=223.1
Q ss_pred HHHhhcCCchhHHHHHHHHHhccCCCccCCCcHHHHHHH-HHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHH
Q 003918 391 RVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAF-AKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAE 469 (786)
Q Consensus 391 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~-a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~ 469 (786)
...+.+|+++.|.+...++-+. . +.+.+++.+ +......|+++.|...|.++.+.+|++.. ......+.
T Consensus 92 l~a~~eGd~~~A~k~l~~~~~~-~------~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~---~~~l~~a~ 161 (398)
T PRK10747 92 LLKLAEGDYQQVEKLMTRNADH-A------EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQL---PVEITRVR 161 (398)
T ss_pred HHHHhCCCHHHHHHHHHHHHhc-c------cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchH---HHHHHHHH
Confidence 3444569999999888876532 1 234444444 55558999999999999999999888730 22234488
Q ss_pred HHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCH
Q 003918 470 MELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATP 549 (786)
Q Consensus 470 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 549 (786)
++...|+++.|.+.+++..+..| +++.+....+.++...|++++|..++.+..+..+.++
T Consensus 162 l~l~~g~~~~Al~~l~~~~~~~P--------------------~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~ 221 (398)
T PRK10747 162 IQLARNENHAARHGVDKLLEVAP--------------------RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDE 221 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCC--------------------CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCH
Confidence 89999999999999999999999 7889999999999999999999999999998877665
Q ss_pred HHHH--------HHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCcc
Q 003918 550 QIII--------NYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPAD 621 (786)
Q Consensus 550 ~~~~--------~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 621 (786)
.... .+........+.+...+..+..-+. .|+++.++..++..+. ..|+.++|...++++++..|+
T Consensus 222 ~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~--~~~~~~~~~~~A~~l~---~~g~~~~A~~~L~~~l~~~~~- 295 (398)
T PRK10747 222 EHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK--TRHQVALQVAMAEHLI---ECDDHDTAQQIILDGLKRQYD- 295 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH--HhCCHHHHHHHHHHHH---HCCCHHHHHHHHHHHHhcCCC-
Confidence 5332 2222222222334444444444333 4778889988877665 458999999999999996553
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChhHHHHHH
Q 003918 622 AVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCL 701 (786)
Q Consensus 622 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~~ 701 (786)
..+...++.+ ..|+.+++....++.++.+|+++...+..+.+. .+.+++++|++.|+++++. .|+ ...+.
T Consensus 296 --~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~--~~~~~~~~A~~~le~al~~-~P~---~~~~~ 365 (398)
T PRK10747 296 --ERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLL--MKHGEWQEASLAFRAALKQ-RPD---AYDYA 365 (398)
T ss_pred --HHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH--HHCCCHHHHHHHHHHHHhc-CCC---HHHHH
Confidence 5565666665 359999999999999999999776665555444 5889999999999999999 887 34677
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHccC
Q 003918 702 KYAELEKSLGEIDRARGIYVFASQFA 727 (786)
Q Consensus 702 ~~~~~~~~~g~~~~A~~~~~~al~~~ 727 (786)
.++.++.+.|+.++|..+|.+++..+
T Consensus 366 ~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 366 WLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 89999999999999999999998763
No 62
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=9.1e-14 Score=135.86 Aligned_cols=312 Identities=13% Similarity=0.104 Sum_probs=250.3
Q ss_pred HHHHhhcCCchhHHHH--HHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHH
Q 003918 390 RRVKIFEGNPTKQILT--YTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEW 467 (786)
Q Consensus 390 ~~~~~~~~~~~~a~~~--~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 467 (786)
.+++...++...+... +-.-.. . .+.++.+...+|+++...|+.++|+..|+++..++|.+. .....|
T Consensus 203 a~Aq~~~~~hs~a~~t~l~le~~~-~-----lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i----~~MD~Y 272 (564)
T KOG1174|consen 203 ALAQMFNFKHSDASQTFLMLHDNT-T-----LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNV----EAMDLY 272 (564)
T ss_pred HHHHHHhcccchhhhHHHHHHhhc-c-----CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhh----hhHHHH
Confidence 3455555555444443 333332 2 237899999999999999999999999999999999988 666778
Q ss_pred HHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccC
Q 003918 468 AEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIA 547 (786)
Q Consensus 468 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 547 (786)
+.++.+.|++++--.+....+.+.. ....-|..-+.+....+++..|+..-++++..+|+
T Consensus 273 a~LL~~eg~~e~~~~L~~~Lf~~~~--------------------~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r 332 (564)
T KOG1174|consen 273 AVLLGQEGGCEQDSALMDYLFAKVK--------------------YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR 332 (564)
T ss_pred HHHHHhccCHhhHHHHHHHHHhhhh--------------------cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc
Confidence 8889999999999998888887764 34455666666667778999999999999999999
Q ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHH
Q 003918 548 TPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLY 627 (786)
Q Consensus 548 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 627 (786)
+.+.+...|.++...|+.++|+-.|+.|+.+ .|...+.|..++..+. ..|.+.+|...-..++...|. +....
T Consensus 333 ~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L--ap~rL~~Y~GL~hsYL---A~~~~kEA~~~An~~~~~~~~--sA~~L 405 (564)
T KOG1174|consen 333 NHEALILKGRLLIALERHTQAVIAFRTAQML--APYRLEIYRGLFHSYL---AQKRFKEANALANWTIRLFQN--SARSL 405 (564)
T ss_pred cchHHHhccHHHHhccchHHHHHHHHHHHhc--chhhHHHHHHHHHHHH---hhchHHHHHHHHHHHHHHhhc--chhhh
Confidence 9999999999999999999999999999998 5888888877665554 458899999999999999998 55666
Q ss_pred HHHH-HHHHH-cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChhHHHHHHHHHH
Q 003918 628 LQYA-KLEED-YGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAE 705 (786)
Q Consensus 628 ~~~a-~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~ 705 (786)
..+| .+... --.-++|.++++++++..|..-.. .....+.+...|.+..++.++++++.. .|+ ......+|+
T Consensus 406 tL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~A--V~~~AEL~~~Eg~~~D~i~LLe~~L~~-~~D---~~LH~~Lgd 479 (564)
T KOG1174|consen 406 TLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPA--VNLIAELCQVEGPTKDIIKLLEKHLII-FPD---VNLHNHLGD 479 (564)
T ss_pred hhhcceeeccCchhHHHHHHHHHhhhccCCccHHH--HHHHHHHHHhhCccchHHHHHHHHHhh-ccc---cHHHHHHHH
Confidence 6554 33322 345689999999999999974333 333445556789999999999999998 886 458899999
Q ss_pred HHHHcCChHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHc
Q 003918 706 LEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNH 746 (786)
Q Consensus 706 ~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~ 746 (786)
++...+.+++|...|..|+.. +|. +......+-.++.+.
T Consensus 480 ~~~A~Ne~Q~am~~y~~ALr~-dP~-~~~sl~Gl~~lEK~~ 518 (564)
T KOG1174|consen 480 IMRAQNEPQKAMEYYYKALRQ-DPK-SKRTLRGLRLLEKSD 518 (564)
T ss_pred HHHHhhhHHHHHHHHHHHHhc-Ccc-chHHHHHHHHHHhcc
Confidence 999999999999999999997 898 566666666665543
No 63
>PRK12370 invasion protein regulator; Provisional
Probab=99.71 E-value=4.4e-15 Score=165.42 Aligned_cols=269 Identities=12% Similarity=0.007 Sum_probs=208.0
Q ss_pred cCCCCHHHHHHH--HH--hhc---CCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHc---------CChhHHH
Q 003918 380 QNPHNVEQWHRR--VK--IFE---GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETY---------KDIANAR 443 (786)
Q Consensus 380 ~~p~~~~~~~~~--~~--~~~---~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~---------~~~~~A~ 443 (786)
..|.++++|..+ +. +.. ++.++|+..|++++ ..+| +++.+|..+|.++... +++++|.
T Consensus 251 ~~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al-~ldP-----~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~ 324 (553)
T PRK12370 251 SELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCV-NMSP-----NSIAPYCALAECYLSMAQMGIFDKQNAMIKAK 324 (553)
T ss_pred CCCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHH-hcCC-----ccHHHHHHHHHHHHHHHHcCCcccchHHHHHH
Confidence 456666655332 22 111 34679999999999 5787 6788888888776532 4489999
Q ss_pred HHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHH
Q 003918 444 VIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVD 523 (786)
Q Consensus 444 ~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (786)
..++++++.+|+++ .+|..++.++...|++++|...|+++++..| +++..|..++.
T Consensus 325 ~~~~~Al~ldP~~~----~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P--------------------~~~~a~~~lg~ 380 (553)
T PRK12370 325 EHAIKATELDHNNP----QALGLLGLINTIHSEYIVGSLLFKQANLLSP--------------------ISADIKYYYGW 380 (553)
T ss_pred HHHHHHHhcCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--------------------CCHHHHHHHHH
Confidence 99999999999998 8899999999999999999999999999999 78899999999
Q ss_pred HHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCC
Q 003918 524 LEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTK 603 (786)
Q Consensus 524 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~ 603 (786)
++...|++++|+..|+++++.+|.++..+..++.++...|++++|+..+++++... .|.++..+..++..+. ..|+
T Consensus 381 ~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~---~~G~ 456 (553)
T PRK12370 381 NLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLS---LKGK 456 (553)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHH---hCCC
Confidence 99999999999999999999999998877777777788999999999999999862 3677776765444333 4589
Q ss_pred hHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHH
Q 003918 604 LERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIY 683 (786)
Q Consensus 604 ~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 683 (786)
+++|+..+++.....|. +...+..++..+...| ++|...++..++.....+....+...++ .-.|+-+.+...
T Consensus 457 ~~eA~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~- 529 (553)
T PRK12370 457 HELARKLTKEISTQEIT--GLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVL--VAHGEAIAEKMW- 529 (553)
T ss_pred HHHHHHHHHHhhhccch--hHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHH--HHHhhhHHHHHH-
Confidence 99999999999888887 5677777888877777 4788878776654433222222222222 345666666655
Q ss_pred HHHHHh
Q 003918 684 EQAIES 689 (786)
Q Consensus 684 ~~al~~ 689 (786)
+++.+.
T Consensus 530 ~~~~~~ 535 (553)
T PRK12370 530 NKFKNE 535 (553)
T ss_pred HHhhcc
Confidence 665543
No 64
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.71 E-value=8.3e-13 Score=139.56 Aligned_cols=306 Identities=15% Similarity=0.101 Sum_probs=180.9
Q ss_pred hhcCCCCHHHHHHHHHhhc--CCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCC
Q 003918 378 LRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYK 455 (786)
Q Consensus 378 l~~~p~~~~~~~~~~~~~~--~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 455 (786)
+..+|+|+.+-+.++..+. ++.+.|.....+++. +++ +..+..|..+|.+....+++..|..+.+.++...|+
T Consensus 471 v~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~-l~~----~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~ 545 (799)
T KOG4162|consen 471 VQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALA-LNR----GDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD 545 (799)
T ss_pred HhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHH-hcC----CccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh
Confidence 4445555554444443332 556666666666663 433 245667777777777777777777777777776666
Q ss_pred ChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHH
Q 003918 456 TVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTR 535 (786)
Q Consensus 456 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 535 (786)
+. .+-..-+.++...++.++|.......+..-..+ ..+.....-+..+. -.
T Consensus 546 N~----~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~------------------~~~q~~~~~g~~~~-------lk 596 (799)
T KOG4162|consen 546 NH----VLMDGKIHIELTFNDREEALDTCIHKLALWEAE------------------YGVQQTLDEGKLLR-------LK 596 (799)
T ss_pred hh----hhchhhhhhhhhcccHHHHHHHHHHHHHHHHhh------------------hhHhhhhhhhhhhh-------hh
Confidence 54 444555555566666666666655554322100 00111111111110 00
Q ss_pred HHHHHHHhhccCCH-HHHHHHHHHHHHccc---HHHHHHHHHHHHhhcCCCCh-----HHHHHHHHHHHHHHhCCCChHH
Q 003918 536 AVYERILDLRIATP-QIIINYALLLEEHKY---FEDAFRVYERGVKIFKYPHV-----KDIWVTYLSKFVKRYGKTKLER 606 (786)
Q Consensus 536 ~~~~~al~~~p~~~-~~~~~~~~~~~~~g~---~~~A~~~~~~al~~~~~p~~-----~~~~~~~~~~~~~~~~~~~~~~ 606 (786)
.-..-++. .|.+. .....+.......+. ++.. +.+.... +.|++ ..+|...+..+. ..++.++
T Consensus 597 ~~l~la~~-q~~~a~s~sr~ls~l~a~~~~~~~se~~---Lp~s~~~-~~~~~~~~~~~~lwllaa~~~~---~~~~~~~ 668 (799)
T KOG4162|consen 597 AGLHLALS-QPTDAISTSRYLSSLVASQLKSAGSELK---LPSSTVL-PGPDSLWYLLQKLWLLAADLFL---LSGNDDE 668 (799)
T ss_pred cccccCcc-cccccchhhHHHHHHHHhhhhhcccccc---cCccccc-CCCCchHHHHHHHHHHHHHHHH---hcCCchH
Confidence 00111111 11111 111111111111111 1111 1111111 12332 135555333332 3467899
Q ss_pred HHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHH--HHH
Q 003918 607 ARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTRE--IYE 684 (786)
Q Consensus 607 A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~--~~~ 684 (786)
|..++..+-...|- +..+|...|..+...|+..+|.+.|..++..+|+++... .....+..+.|+-..|.. +..
T Consensus 669 a~~CL~Ea~~~~~l--~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~--~Ala~~lle~G~~~la~~~~~L~ 744 (799)
T KOG4162|consen 669 ARSCLLEASKIDPL--SASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSM--TALAELLLELGSPRLAEKRSLLS 744 (799)
T ss_pred HHHHHHHHHhcchh--hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHH--HHHHHHHHHhCCcchHHHHHHHH
Confidence 99999999999998 889999999999999999999999999999999965554 444444456666555544 999
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCCCH
Q 003918 685 QAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDT 733 (786)
Q Consensus 685 ~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~~~~ 733 (786)
.+++. .|. ++.+|+.+|.++.+.|+.+.|.++|..|++. .+.++.
T Consensus 745 dalr~-dp~--n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL-e~S~PV 789 (799)
T KOG4162|consen 745 DALRL-DPL--NHEAWYYLGEVFKKLGDSKQAAECFQAALQL-EESNPV 789 (799)
T ss_pred HHHhh-CCC--CHHHHHHHHHHHHHccchHHHHHHHHHHHhh-ccCCCc
Confidence 99999 888 5679999999999999999999999999997 444333
No 65
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.71 E-value=1.5e-13 Score=145.16 Aligned_cols=431 Identities=13% Similarity=0.107 Sum_probs=241.4
Q ss_pred HhHHHHHHH--HHcCChhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhc--CCCHH
Q 003918 28 KLWWRYLVA--KREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTM--HKMPR 103 (786)
Q Consensus 28 ~~w~~~~~~--~~~~~~~~~~~~~~~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~ 103 (786)
.+-++.+.+ ...|.+..+...||+++...-...+.|..+.--.... |.-..|..+.+..+... |+++.
T Consensus 323 ~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saa--------g~~s~Av~ll~~~~~~~~~ps~~s 394 (799)
T KOG4162|consen 323 AAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAA--------GSDSKAVNLLRESLKKSEQPSDIS 394 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHh--------ccchHHHHHHHhhcccccCCCcch
Confidence 333444443 3468899999999999999999999999988876654 66788999999999988 88899
Q ss_pred HHHHHHHHHHcC-CcHHHHHHHHHHHHhhCCCCc---chhhHH----HHHHHHHhcCCC------hHHHHHHHHHHHccC
Q 003918 104 IWIMYLETLTSQ-KFITKARRTFDRALCALPVTQ---HDRIWE----IYLRFVEQEGIP------IETSLRVYRRYLKYD 169 (786)
Q Consensus 104 ~w~~~~~~~~~~-~~~~~A~~~~~~al~~~p~~~---~~~~w~----~~~~~~~~~~~~------~~~A~~~~~~~l~~~ 169 (786)
+..+....+.+. +.++.+...-.+++....... .+..+. .|......-+.. ..++++.++++++++
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d 474 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD 474 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence 999999998875 778888888888877332110 112222 222222221111 157899999999999
Q ss_pred CCCHHHHH---HHHHhcCCHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHhcccccccCCcHHHHHHhhhhccCc
Q 003918 170 PSHIEDFI---EFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTD 246 (786)
Q Consensus 170 p~~~~~~~---~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 246 (786)
|+|+.... -.+.-.++.+.|....+++++.. +..+...|.-++-.+....+.. .+..++..++..+|.
T Consensus 475 ~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~------~~~~~~~whLLALvlSa~kr~~---~Al~vvd~al~E~~~ 545 (799)
T KOG4162|consen 475 PTDPLVIFYLALQYAEQRQLTSALDYAREALALN------RGDSAKAWHLLALVLSAQKRLK---EALDVVDAALEEFGD 545 (799)
T ss_pred CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhc------CCccHHHHHHHHHHHhhhhhhH---HHHHHHHHHHHHhhh
Confidence 99996544 23445688888998888888542 2233445544444333322221 233455555555555
Q ss_pred hhHHHHHHHHHHHHhhccHHHHHHHHHHHhhccCchhcHHHHHHHHHHHHHHHHHHH-hcCCCCCCcccccccccCCcch
Q 003918 247 EVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAK-MAKPDLSVEEEEDDEEHGSAED 325 (786)
Q Consensus 247 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 325 (786)
| -.+...-+.+....|+.++|.......+. +|..-..++....... ++...+
T Consensus 546 N-~~l~~~~~~i~~~~~~~e~~l~t~~~~L~----------~we~~~~~q~~~~~g~~~~lk~~---------------- 598 (799)
T KOG4162|consen 546 N-HVLMDGKIHIELTFNDREEALDTCIHKLA----------LWEAEYGVQQTLDEGKLLRLKAG---------------- 598 (799)
T ss_pred h-hhhchhhhhhhhhcccHHHHHHHHHHHHH----------HHHhhhhHhhhhhhhhhhhhhcc----------------
Confidence 4 22222223333334555555554444442 2211111111000000 000000
Q ss_pred hhhHhhhhhhHHHHHHhHhcccccCccchHHHHHHHHHhhhhhchhhhhhhhhhcCCCCHH-HHHHHHHhhc-----CCc
Q 003918 326 EDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVE-QWHRRVKIFE-----GNP 399 (786)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~-~~~~~~~~~~-----~~~ 399 (786)
+. +...+|.+.. .......... -+.
T Consensus 599 ------------------------------------l~-------------la~~q~~~a~s~sr~ls~l~a~~~~~~~s 629 (799)
T KOG4162|consen 599 ------------------------------------LH-------------LALSQPTDAISTSRYLSSLVASQLKSAGS 629 (799)
T ss_pred ------------------------------------cc-------------cCcccccccchhhHHHHHHHHhhhhhccc
Confidence 00 0000111110 0000000000 000
Q ss_pred hhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHH
Q 003918 400 TKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKG 479 (786)
Q Consensus 400 ~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~ 479 (786)
+.. +......-.|+........+|...+..+...++.++|..+..++-..+|..+ ..|+..|.++...|+.++
T Consensus 630 e~~---Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~----~~~~~~G~~~~~~~~~~E 702 (799)
T KOG4162|consen 630 ELK---LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSA----SVYYLRGLLLEVKGQLEE 702 (799)
T ss_pred ccc---cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhH----HHHHHhhHHHHHHHhhHH
Confidence 000 0000000111111111245666666667777777777777777766666655 666666666667777777
Q ss_pred HHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHH--HHHHHHhhccCCHHHHHHHHH
Q 003918 480 ALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRA--VYERILDLRIATPQIIINYAL 557 (786)
Q Consensus 480 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~~~~ 557 (786)
|.+.|..++.++| +++.....+|.++.+.|+..-|.. .+..+++.+|.++++|+.+|.
T Consensus 703 A~~af~~Al~ldP--------------------~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~ 762 (799)
T KOG4162|consen 703 AKEAFLVALALDP--------------------DHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGE 762 (799)
T ss_pred HHHHHHHHHhcCC--------------------CCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 7777777777777 556666666666666665555544 677777777777777777777
Q ss_pred HHHHcccHHHHHHHHHHHHhh
Q 003918 558 LLEEHKYFEDAFRVYERGVKI 578 (786)
Q Consensus 558 ~~~~~g~~~~A~~~~~~al~~ 578 (786)
+..+.|+.++|.++|.-++..
T Consensus 763 v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 763 VFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHccchHHHHHHHHHHHhh
Confidence 777777777777777766665
No 66
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.71 E-value=5.2e-15 Score=134.36 Aligned_cols=204 Identities=17% Similarity=0.092 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccC
Q 003918 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADG 503 (786)
Q Consensus 424 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 503 (786)
.+.+.+|.-|+..|++..|+..++++|+.+|++. ..|..++.++.+.|+.+.|.+.|++++++.|
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~----~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p----------- 100 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYY----LAHLVRAHYYQKLGENDLADESYRKALSLAP----------- 100 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH----HHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-----------
Confidence 4556666666666777777777777777666665 6666666666666666666666666666666
Q ss_pred ChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCC
Q 003918 504 NEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDL--RIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKY 581 (786)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~ 581 (786)
++..+.+.||.++..+|.+++|...|++|+.. .|..+..|.++|.+..+.|+++.|...|+|+++. +
T Consensus 101 ---------~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--d 169 (250)
T COG3063 101 ---------NNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--D 169 (250)
T ss_pred ---------CccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--C
Confidence 55566666666666666666666666666652 2223345666666666666666666666666665 4
Q ss_pred CChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 003918 582 PHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHE 658 (786)
Q Consensus 582 p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~ 658 (786)
|..+..........+ ..|++..|+..+++.....+. .......-+.+....|+-+.+-++=.+.-+.+|..+
T Consensus 170 p~~~~~~l~~a~~~~---~~~~y~~Ar~~~~~~~~~~~~--~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 170 PQFPPALLELARLHY---KAGDYAPARLYLERYQQRGGA--QAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred cCCChHHHHHHHHHH---hcccchHHHHHHHHHHhcccc--cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 555554444333222 345566666666666555543 333333444555555666555555555555555443
No 67
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=6.6e-14 Score=142.26 Aligned_cols=479 Identities=17% Similarity=0.112 Sum_probs=279.2
Q ss_pred CCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHhcCCChHHH
Q 003918 79 ITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETS 158 (786)
Q Consensus 79 ~~~~~~~~A~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~w~~~~~~~~~~~~~~~~A 158 (786)
+..|+++.|+.+|..|+.++|.|.-++..-...+...+++++|.+--.+++..+|.- +..|...+..+.-.|++ ++|
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w--~kgy~r~Gaa~~~lg~~-~eA 89 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDW--AKGYSRKGAALFGLGDY-EEA 89 (539)
T ss_pred cccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCch--hhHHHHhHHHHHhcccH-HHH
Confidence 345999999999999999999999999988889999999999999999999999965 78888888888889999 999
Q ss_pred HHHHHHHHccCCCCHHHHHHHHHhcCCHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHhcccccccCCcHHHHHH
Q 003918 159 LRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIR 238 (786)
Q Consensus 159 ~~~~~~~l~~~p~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (786)
+..|.+.|+.+|+|...+-.+.-.. ..+.+. .+.. ..+.+|..+...-..... -....+.
T Consensus 90 ~~ay~~GL~~d~~n~~L~~gl~~a~-~~~~~~---~~~~-----------~~p~~~~~l~~~p~t~~~-----~~~~~~~ 149 (539)
T KOG0548|consen 90 ILAYSEGLEKDPSNKQLKTGLAQAY-LEDYAA---DQLF-----------TKPYFHEKLANLPLTNYS-----LSDPAYV 149 (539)
T ss_pred HHHHHHHhhcCCchHHHHHhHHHhh-hHHHHh---hhhc-----------cCcHHHHHhhcChhhhhh-----hccHHHH
Confidence 9999999999999973322111100 000000 1111 123355554422211110 0011222
Q ss_pred hhhhccCchhHHHHHHHHHHHHhhccHHHHHHHHHHHhhccCchhcHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccc
Q 003918 239 GGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDE 318 (786)
Q Consensus 239 ~~~~~~p~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (786)
..++..+.++..+ . .|..-.++..|.-++..+-.... . ..+.....
T Consensus 150 ~~l~~~~~~p~~l-~----~~l~d~r~m~a~~~l~~~~~~~~---------------~---------~~~~~~~~----- 195 (539)
T KOG0548|consen 150 KILEIIQKNPTSL-K----LYLNDPRLMKADGQLKGVDELLF---------------Y---------ASGIEILA----- 195 (539)
T ss_pred HHHHHhhcCcHhh-h----cccccHHHHHHHHHHhcCccccc---------------c---------ccccccCC-----
Confidence 2222223221111 0 11111111122211111000000 0 00000000
Q ss_pred ccCCcchhhhHhhhhhhHHHHHHhHhcccccCccchHHHHHHHHHhhhhhchhhhhhhhhhcCCCCHHHHHHHHHhhcCC
Q 003918 319 EHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGN 398 (786)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~ 398 (786)
-..+|.... ..-.... ++
T Consensus 196 -----------------------------------------------------------~~~~p~~~~--~~~~~~~-~d 213 (539)
T KOG0548|consen 196 -----------------------------------------------------------SMAEPCKQE--HNGFPII-ED 213 (539)
T ss_pred -----------------------------------------------------------CCCCccccc--CCCCCcc-ch
Confidence 000000000 0000000 00
Q ss_pred chhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHH
Q 003918 399 PTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFK 478 (786)
Q Consensus 399 ~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~ 478 (786)
..+-.+.-.. ..-...+|....+..++..|++.|..++.++ .+. ..+...+..+...|.+.
T Consensus 214 ~~ee~~~k~~--------------a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~i----t~~~n~aA~~~e~~~~~ 274 (539)
T KOG0548|consen 214 NTEERRVKEK--------------AHKEKELGNAAYKKKDFETAIQHYAKALELA-TDI----TYLNNIAAVYLERGKYA 274 (539)
T ss_pred hHHHHHHHHh--------------hhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhh----HHHHHHHHHHHhccHHH
Confidence 0000111111 1123566666667777888888888888777 554 55666666777777777
Q ss_pred HHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHH
Q 003918 479 GALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALL 558 (786)
Q Consensus 479 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 558 (786)
+.+....++++..-.. +.. ...-.......|..+...++++.++..|.+++...- .|+.
T Consensus 275 ~c~~~c~~a~E~gre~---rad----------~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~R-t~~~------- 333 (539)
T KOG0548|consen 275 ECIELCEKAVEVGREL---RAD----------YKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHR-TPDL------- 333 (539)
T ss_pred HhhcchHHHHHHhHHH---HHH----------HHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhc-CHHH-------
Confidence 6666666655433200 000 000112222245567777899999999999887532 2333
Q ss_pred HHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcC
Q 003918 559 LEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYG 638 (786)
Q Consensus 559 ~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g 638 (786)
..+....++++...++..-. +|.-..--..-+. ..+..|++..|+..|.++|..+|+ +..+|.+.|-++.+.|
T Consensus 334 ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGn---e~Fk~gdy~~Av~~YteAIkr~P~--Da~lYsNRAac~~kL~ 406 (539)
T KOG0548|consen 334 LSKLKEAEKALKEAERKAYI--NPEKAEEEREKGN---EAFKKGDYPEAVKHYTEAIKRDPE--DARLYSNRAACYLKLG 406 (539)
T ss_pred HHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHH---HHHhccCHHHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHh
Confidence 33333445555555544443 4544332222222 223458899999999999999999 7889999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHH
Q 003918 639 LAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARG 718 (786)
Q Consensus 639 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~ 718 (786)
++..|++-.+.+++.+|+....++..+.+.. .+.+|++|.+.|.++++. .|+ +..+.-.+.+....+.......+
T Consensus 407 ~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~--~mk~ydkAleay~eale~-dp~--~~e~~~~~~rc~~a~~~~~~~ee 481 (539)
T KOG0548|consen 407 EYPEALKDAKKCIELDPNFIKAYLRKGAALR--AMKEYDKALEAYQEALEL-DPS--NAEAIDGYRRCVEAQRGDETPEE 481 (539)
T ss_pred hHHHHHHHHHHHHhcCchHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhc-Cch--hHHHHHHHHHHHHHhhcCCCHHH
Confidence 9999999999999999987666666665554 456999999999999999 887 45566666666555444445556
Q ss_pred HHHHHHccCCCC
Q 003918 719 IYVFASQFADPR 730 (786)
Q Consensus 719 ~~~~al~~~~p~ 730 (786)
+++++.. +|+
T Consensus 482 ~~~r~~~--dpe 491 (539)
T KOG0548|consen 482 TKRRAMA--DPE 491 (539)
T ss_pred HHHhhcc--CHH
Confidence 6666554 455
No 68
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.70 E-value=8.5e-15 Score=132.95 Aligned_cols=206 Identities=17% Similarity=0.144 Sum_probs=168.8
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 003918 461 ASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYER 540 (786)
Q Consensus 461 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 540 (786)
..+.+.++.-+++.|++..|..-++++++.+| ++...|..++.+|...|+.+.|.+.|++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DP--------------------s~~~a~~~~A~~Yq~~Ge~~~A~e~Yrk 94 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDP--------------------SYYLAHLVRAHYYQKLGENDLADESYRK 94 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--------------------ccHHHHHHHHHHHHHcCChhhHHHHHHH
Confidence 46778888888999999999999999999999 7889999999999999999999999999
Q ss_pred HHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCc
Q 003918 541 ILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPA 620 (786)
Q Consensus 541 al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 620 (786)
|+++.|++.++++++|.+++.+|++++|...|++|+..-..|.....|.+.+...+ ..|+++.|+++|+|+++.+|+
T Consensus 95 Alsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal---~~gq~~~A~~~l~raL~~dp~ 171 (250)
T COG3063 95 ALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCAL---KAGQFDQAEEYLKRALELDPQ 171 (250)
T ss_pred HHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHh---hcCCchhHHHHHHHHHHhCcC
Confidence 99999999999999999999999999999999999995323444566776443222 568999999999999999998
Q ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCCh
Q 003918 621 DAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDK 694 (786)
Q Consensus 621 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~ 694 (786)
.......++..++..|++-.|+..+++.....+.. ......-+.++...|+-+.+-++=.+.... .|..
T Consensus 172 --~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~--A~sL~L~iriak~~gd~~~a~~Y~~qL~r~-fP~s 240 (250)
T COG3063 172 --FPPALLELARLHYKAGDYAPARLYLERYQQRGGAQ--AESLLLGIRIAKRLGDRAAAQRYQAQLQRL-FPYS 240 (250)
T ss_pred --CChHHHHHHHHHHhcccchHHHHHHHHHHhccccc--HHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCc
Confidence 55778889999999999999999999988777643 322223344455678888777766666666 7773
No 69
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.68 E-value=2.9e-14 Score=145.48 Aligned_cols=241 Identities=15% Similarity=0.121 Sum_probs=180.5
Q ss_pred ccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHH
Q 003918 474 HKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIII 553 (786)
Q Consensus 474 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 553 (786)
.+..+.++..+.+++...+..- ...+..|...|.++...|+.+.|+..|+++++.+|+++.+|.
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~----------------~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~ 102 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTD----------------EERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYN 102 (296)
T ss_pred chHHHHHHHHHHHHHccccCCc----------------HhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 3567778888888885332000 034678999999999999999999999999999999999999
Q ss_pred HHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHH
Q 003918 554 NYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKL 633 (786)
Q Consensus 554 ~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~ 633 (786)
.+|.++...|++++|+..|++++++ +|++..+|...+..+. ..|++++|...|+++++.+|++....+|. .+
T Consensus 103 ~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~---~~g~~~eA~~~~~~al~~~P~~~~~~~~~---~l 174 (296)
T PRK11189 103 YLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIALY---YGGRYELAQDDLLAFYQDDPNDPYRALWL---YL 174 (296)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHhCCCCHHHHHHH---HH
Confidence 9999999999999999999999998 7999999988665544 45899999999999999999843112332 23
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHH-------HhcCCChhHHHHHHHHHHH
Q 003918 634 EEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAI-------ESGLPDKDVKAMCLKYAEL 706 (786)
Q Consensus 634 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-------~~~~p~~~~~~~~~~~~~~ 706 (786)
....+++++|...+.+.+...++ ..+.+ .... ...|+...+ ..++.+. +. .|. .+.+|+.+|.+
T Consensus 175 ~~~~~~~~~A~~~l~~~~~~~~~--~~~~~-~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l-~~~--~~ea~~~Lg~~ 245 (296)
T PRK11189 175 AESKLDPKQAKENLKQRYEKLDK--EQWGW-NIVE--FYLGKISEE-TLMERLKAGATDNTEL-AER--LCETYFYLAKY 245 (296)
T ss_pred HHccCCHHHHHHHHHHHHhhCCc--cccHH-HHHH--HHccCCCHH-HHHHHHHhcCCCcHHH-HHH--HHHHHHHHHHH
Confidence 44578999999999887765443 23332 2222 245566544 3444444 22 223 45789999999
Q ss_pred HHHcCChHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHcCC
Q 003918 707 EKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGN 748 (786)
Q Consensus 707 ~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~G~ 748 (786)
+.+.|++++|+.+|++|++..+|+ ..+.-...+.+....+.
T Consensus 246 ~~~~g~~~~A~~~~~~Al~~~~~~-~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 246 YLSLGDLDEAAALFKLALANNVYN-FVEHRYALLELALLGQD 286 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCch-HHHHHHHHHHHHHHHhh
Confidence 999999999999999999973345 56666666666555444
No 70
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=99.68 E-value=5.3e-13 Score=131.90 Aligned_cols=138 Identities=20% Similarity=0.332 Sum_probs=89.1
Q ss_pred CCCCCcchHhHHHHhhCCCChHhHHHHHHHH-HcCChhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccCCCCCchhHH
Q 003918 7 LYPSEDDLLYEEELLRNPFSLKLWWRYLVAK-REAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYE 85 (786)
Q Consensus 7 ~~~~~~~~~~~~~l~~~p~~~~~w~~~~~~~-~~~~~~~~~~~~~~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 85 (786)
--|-.+.+.+...|.-||.|+-+|..++++. .++.+++.+.+|++.+.-+|--+..|..|+.-++.. .++.
T Consensus 22 ~~i~~D~lrLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~--------~df~ 93 (660)
T COG5107 22 DNIHGDELRLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELAR--------KDFR 93 (660)
T ss_pred cCCCchHHHHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhh--------hhHH
Confidence 3455677888899999999999999998864 455555556666666655655555555555544432 3444
Q ss_pred HHHHHHHHHH---------------------------------------H---hcCCCHHHHHHHHHHHH---------c
Q 003918 86 TLNNTFERAL---------------------------------------V---TMHKMPRIWIMYLETLT---------S 114 (786)
Q Consensus 86 ~A~~~~~~al---------------------------------------~---~~p~~~~~w~~~~~~~~---------~ 114 (786)
.++.+|.||| . .+|.+...|..|+.|.. +
T Consensus 94 svE~lf~rCL~k~l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEe 173 (660)
T COG5107 94 SVESLFGRCLKKSLNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEE 173 (660)
T ss_pred HHHHHHHHHHhhhccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHH
Confidence 4444444443 3 34677777877777765 2
Q ss_pred CCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHhcCC
Q 003918 115 QKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGI 153 (786)
Q Consensus 115 ~~~~~~A~~~~~~al~~~p~~~~~~~w~~~~~~~~~~~~ 153 (786)
|.+++..+..|.|||+ .|......+|..|-+++...+.
T Consensus 174 Qqrid~iR~~Y~ral~-tP~~nleklW~dy~~fE~e~N~ 211 (660)
T COG5107 174 QQRIDKIRNGYMRALQ-TPMGNLEKLWKDYENFELELNK 211 (660)
T ss_pred HHHHHHHHHHHHHHHc-CccccHHHHHHHHHHHHHHHHH
Confidence 3456777777888877 4554457778777777665443
No 71
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.68 E-value=1.8e-13 Score=130.59 Aligned_cols=323 Identities=12% Similarity=0.077 Sum_probs=252.2
Q ss_pred cCCCCHHHHHHHHHhh--cCCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCCh
Q 003918 380 QNPHNVEQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTV 457 (786)
Q Consensus 380 ~~p~~~~~~~~~~~~~--~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 457 (786)
.+|.++.-.+.++.-+ .|++..|+..|-.|+ ..+| ++-.+++..|..|...|+-.-|+.-+.+++++.|+..
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAv-e~dp-----~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~ 106 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAV-EGDP-----NNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFM 106 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-cCCc-----hhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHH
Confidence 3455555566666554 388999999999999 5777 6788889999999999999999999999999999886
Q ss_pred hhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHH--HHHHcCChHHHH
Q 003918 458 DHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVD--LEESLGNLESTR 535 (786)
Q Consensus 458 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~A~ 535 (786)
.+...-+.+++++|.+++|..-|+..+...|+.-. ...++.++......|...-. -....|+...|+
T Consensus 107 ----~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~-------~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai 175 (504)
T KOG0624|consen 107 ----AARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGL-------VLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAI 175 (504)
T ss_pred ----HHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcch-------hHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHH
Confidence 78888999999999999999999999988773210 01111112122233332222 223568999999
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 003918 536 AVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAV 615 (786)
Q Consensus 536 ~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 615 (786)
......+++.|.+..++...+.+|...|.+..|+.-++.+-++ ..++.+..+.....++ ..|+...+......|+
T Consensus 176 ~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askL--s~DnTe~~ykis~L~Y---~vgd~~~sL~~iRECL 250 (504)
T KOG0624|consen 176 EMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKL--SQDNTEGHYKISQLLY---TVGDAENSLKEIRECL 250 (504)
T ss_pred HHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc--cccchHHHHHHHHHHH---hhhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998 4566777776554444 4588999999999999
Q ss_pred hhCCccCcHHHHHHHH----------HH--HHHcCCHHHHHHHHHHHHhcCCCCchhhH--HHHHHHHHHHhcChhHHHH
Q 003918 616 ETAPADAVKPLYLQYA----------KL--EEDYGLAKRAMKVYDQATKAVPNHEKLGM--YEIYIARAAEIFGVPKTRE 681 (786)
Q Consensus 616 ~~~p~~~~~~~~~~~a----------~~--~~~~g~~~~A~~~~~~~l~~~p~~~~~~~--~~~~~~~~~~~~~~~~A~~ 681 (786)
+.+|+. ...+-.|- .+ ....+++.++.+..++.++..|..+.+.+ ....-.++...+++.+|+.
T Consensus 251 KldpdH--K~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiq 328 (504)
T KOG0624|consen 251 KLDPDH--KLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQ 328 (504)
T ss_pred ccCcch--hhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHH
Confidence 999983 33322221 11 22468899999999999999997554432 3333334455688999999
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCC
Q 003918 682 IYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPR 730 (786)
Q Consensus 682 ~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~ 730 (786)
...+++.. .|+ +..++..-+.++.....++.|+.-|++|.+. +++
T Consensus 329 qC~evL~~-d~~--dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~-n~s 373 (504)
T KOG0624|consen 329 QCKEVLDI-DPD--DVQVLCDRAEAYLGDEMYDDAIHDYEKALEL-NES 373 (504)
T ss_pred HHHHHHhc-Cch--HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc-Ccc
Confidence 99999999 888 5679999999999999999999999999997 676
No 72
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.67 E-value=2.6e-14 Score=145.86 Aligned_cols=152 Identities=13% Similarity=-0.013 Sum_probs=76.9
Q ss_pred chhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHH
Q 003918 399 PTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFK 478 (786)
Q Consensus 399 ~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~ 478 (786)
.+.++..+.++|...+- .....+..|..+|..+...|++++|+..|+++++.+|+++ .+|..++.++...|+++
T Consensus 42 ~e~~i~~~~~~l~~~~~--~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~----~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 42 QEVILARLNQILASRDL--TDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMA----DAYNYLGIYLTQAGNFD 115 (296)
T ss_pred HHHHHHHHHHHHccccC--CcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHCCCHH
Confidence 44455555555532111 1122244455555555555555555555555555555554 55555555555555555
Q ss_pred HHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHH
Q 003918 479 GALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALL 558 (786)
Q Consensus 479 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 558 (786)
+|+..|++++++.| ++...|..+|.++...|++++|...|+++++.+|+++.. ..+..+
T Consensus 116 ~A~~~~~~Al~l~P--------------------~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~-~~~~~l 174 (296)
T PRK11189 116 AAYEAFDSVLELDP--------------------TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYR-ALWLYL 174 (296)
T ss_pred HHHHHHHHHHHhCC--------------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH-HHHHHH
Confidence 55555555555555 445555555555555555555555555555555555421 111112
Q ss_pred HHHcccHHHHHHHHHHHHh
Q 003918 559 LEEHKYFEDAFRVYERGVK 577 (786)
Q Consensus 559 ~~~~g~~~~A~~~~~~al~ 577 (786)
....+++++|+..+.+++.
T Consensus 175 ~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 175 AESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHccCCHHHHHHHHHHHHh
Confidence 2334455555555554443
No 73
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.66 E-value=4e-14 Score=140.71 Aligned_cols=201 Identities=16% Similarity=0.123 Sum_probs=122.2
Q ss_pred cHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhc
Q 003918 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAA 501 (786)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 501 (786)
.+..+..+|..+...|++++|+..|++++..+|++. ..+..++.++...|++++|.+.+++++...|
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--------- 96 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDY----LAYLALALYYQQLGELEKAEDSFRRALTLNP--------- 96 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---------
Confidence 355666666677777777777777777776666665 5666666666666677777776666666666
Q ss_pred cCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhc--cCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhc
Q 003918 502 DGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLR--IATPQIIINYALLLEEHKYFEDAFRVYERGVKIF 579 (786)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 579 (786)
.+...+..++.++...|++++|...|++++... |..+..+..+|.++...|++++|...+.+++..
T Consensus 97 -----------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 164 (234)
T TIGR02521 97 -----------NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI- 164 (234)
T ss_pred -----------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 455566666666666666666666666666532 334455666666666666666666666666664
Q ss_pred CCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 003918 580 KYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKA 653 (786)
Q Consensus 580 ~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 653 (786)
+|.+...|..++..+. ..|++++|...++++++..|. +...+...+.++...|+.++|..+.+.+...
T Consensus 165 -~~~~~~~~~~la~~~~---~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 165 -DPQRPESLLELAELYY---LRGQYKDARAYLERYQQTYNQ--TAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred -CcCChHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 4555555554433322 235566666666666666444 3444555555665666666666655554443
No 74
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.66 E-value=1.4e-14 Score=137.22 Aligned_cols=279 Identities=14% Similarity=0.115 Sum_probs=164.6
Q ss_pred CCCHHHHHHHHHhhcCCchhHHHHHHHHHh--ccCCCccCCCcHHHH--HHHHHHHHHcCChhHHHHHHHHHHhccCCCh
Q 003918 382 PHNVEQWHRRVKIFEGNPTKQILTYTEAVR--TVDPMKAVGKPHTLW--VAFAKLYETYKDIANARVIFDKAVQVNYKTV 457 (786)
Q Consensus 382 p~~~~~~~~~~~~~~~~~~~a~~~~~~al~--~~~~~~~~~~~~~~~--~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 457 (786)
|.-....+.+.-.++++...|-......+. ...|....+...+-| ..+|++|.+.|-+.+|.+.|+..++..|.-
T Consensus 178 p~l~kaLFey~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~- 256 (478)
T KOG1129|consen 178 PTLVKALFEYLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHP- 256 (478)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCch-
Confidence 333344445555555555555443333221 112222222223333 456777777777777777777777665532
Q ss_pred hhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHH
Q 003918 458 DHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAV 537 (786)
Q Consensus 458 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 537 (786)
+-+..++..+.+..++..|+.+|...+...| .++......+.++...++.+.|.++
T Consensus 257 ----dTfllLskvY~ridQP~~AL~~~~~gld~fP--------------------~~VT~l~g~ARi~eam~~~~~a~~l 312 (478)
T KOG1129|consen 257 ----DTFLLLSKVYQRIDQPERALLVIGEGLDSFP--------------------FDVTYLLGQARIHEAMEQQEDALQL 312 (478)
T ss_pred ----hHHHHHHHHHHHhccHHHHHHHHhhhhhcCC--------------------chhhhhhhhHHHHHHHHhHHHHHHH
Confidence 5556666667777777777777777777777 4556666666677777777777777
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhh
Q 003918 538 YERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVET 617 (786)
Q Consensus 538 ~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 617 (786)
|+.+++.+|.+.++.--.+.-|.-.|+++-|+..|+|.+.. --.+++++.+.+ .++. -.++++-+...|+|++..
T Consensus 313 Yk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm--G~~speLf~Nig-LCC~--yaqQ~D~~L~sf~RAlst 387 (478)
T KOG1129|consen 313 YKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQM--GAQSPELFCNIG-LCCL--YAQQIDLVLPSFQRALST 387 (478)
T ss_pred HHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHh--cCCChHHHhhHH-HHHH--hhcchhhhHHHHHHHHhh
Confidence 77777777777666666666666666777777777777765 245556666533 2221 225566677777777665
Q ss_pred CCc-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCC
Q 003918 618 APA-DAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPD 693 (786)
Q Consensus 618 ~p~-~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~ 693 (786)
..+ .....+|++++.+....|++.-|...|+-++..+|++.......+.+. .+.|+++.|+.++..+-.. .|.
T Consensus 388 at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~--~r~G~i~~Arsll~~A~s~-~P~ 461 (478)
T KOG1129|consen 388 ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLA--ARSGDILGARSLLNAAKSV-MPD 461 (478)
T ss_pred ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHH--hhcCchHHHHHHHHHhhhh-Ccc
Confidence 331 113456777766666666666666666666666665544444444443 2556666666666666555 554
No 75
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=7.1e-13 Score=134.88 Aligned_cols=442 Identities=11% Similarity=0.066 Sum_probs=255.4
Q ss_pred HcCChhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCc
Q 003918 38 REAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKF 117 (786)
Q Consensus 38 ~~~~~~~~~~~~~~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~w~~~~~~~~~~~~ 117 (786)
..++++.++..|-.|+..+|.+--+...-...+.+. |+|++|.+--.++++..|.=+..|...+......|+
T Consensus 14 s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~--------~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 14 SSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASL--------GSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred ccccHHHHHHHHHHHHccCCCccchhcchHHHHHHH--------hhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhccc
Confidence 368889999999999999999877777777766655 899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHhc---CCC--------------------hHHHHHHHHHHHccCCCCHH
Q 003918 118 ITKARRTFDRALCALPVTQHDRIWEIYLRFVEQE---GIP--------------------IETSLRVYRRYLKYDPSHIE 174 (786)
Q Consensus 118 ~~~A~~~~~~al~~~p~~~~~~~w~~~~~~~~~~---~~~--------------------~~~A~~~~~~~l~~~p~~~~ 174 (786)
++.|...|..+|..+|++ ..+...+.+.+... ++. .+.+.....+.++.+|.+..
T Consensus 86 ~~eA~~ay~~GL~~d~~n--~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDPSN--KQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred HHHHHHHHHHHhhcCCch--HHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 999999999999999975 66666665554111 000 01111111122222222211
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhc-------CCCccccCCCcchHHHHHHHHHHhcccccccCCcHHHHHHhhhhccCch
Q 003918 175 DFIEFLVKSKLWQEAAERLASVLN-------DDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDE 247 (786)
Q Consensus 175 ~~~~~~~~~g~~~~A~~~~~~~l~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 247 (786)
.++ .-.+...|.-.+..+-. .........|. ....+. . ...+...+......
T Consensus 164 ~~l----~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~------------~~~~~~-~-~~~~d~~ee~~~k~--- 222 (539)
T KOG0548|consen 164 LYL----NDPRLMKADGQLKGVDELLFYASGIEILASMAEPC------------KQEHNG-F-PIIEDNTEERRVKE--- 222 (539)
T ss_pred ccc----ccHHHHHHHHHHhcCccccccccccccCCCCCCcc------------cccCCC-C-CccchhHHHHHHHH---
Confidence 110 00111111111110000 00000000000 000000 0 00000000000000
Q ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHhhccCchhcHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhh
Q 003918 248 VGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDED 327 (786)
Q Consensus 248 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (786)
...-...+|....+..+++.|.+.|..++... +..++.. -.+.+.++.
T Consensus 223 ~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~-n~aA~~~e~------------------------------ 270 (539)
T KOG0548|consen 223 KAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLN-NIAAVYLER------------------------------ 270 (539)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHH-HHHHHHHhc------------------------------
Confidence 01224556666677778888888888888664 2211000 000000110
Q ss_pred hHhhhhhhHHHHHHhHhcccccCccchHHHHHHHHHhhhhhchhhhhhhhhhcCCCCHHHHHHHHHhhcCCchhHHHHHH
Q 003918 328 IRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYT 407 (786)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~ 407 (786)
..+... ...+.+ ....| .+....|.
T Consensus 271 --------------------------------~~~~~c-------------~~~c~~--------a~E~g--re~rad~k 295 (539)
T KOG0548|consen 271 --------------------------------GKYAEC-------------IELCEK--------AVEVG--RELRADYK 295 (539)
T ss_pred --------------------------------cHHHHh-------------hcchHH--------HHHHh--HHHHHHHH
Confidence 000000 000000 00000 00111111
Q ss_pred HHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 003918 408 EAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRA 487 (786)
Q Consensus 408 ~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 487 (786)
. | ......+|..+.+.++++.|+..|.+++...-. .++..+....+++.....+.
T Consensus 296 l-I------------ak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt------------~~~ls~lk~~Ek~~k~~e~~ 350 (539)
T KOG0548|consen 296 L-I------------AKALARLGNAYTKREDYEGAIKYYQKALTEHRT------------PDLLSKLKEAEKALKEAERK 350 (539)
T ss_pred H-H------------HHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC------------HHHHHHHHHHHHHHHHHHHH
Confidence 1 1 012233566777779999999999998864321 22234445566666666666
Q ss_pred hcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHH
Q 003918 488 TAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFED 567 (786)
Q Consensus 488 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~ 567 (786)
.-+.| .-..--..-|...-..|++..|+..|.+++..+|+++.+|.+.+.+|.+.|.+..
T Consensus 351 a~~~p--------------------e~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~ 410 (539)
T KOG0548|consen 351 AYINP--------------------EKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPE 410 (539)
T ss_pred HhhCh--------------------hHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHH
Confidence 65666 1122222336667788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 003918 568 AFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVY 647 (786)
Q Consensus 568 A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~ 647 (786)
|++..++++++ +|+...+|..-+..+. .+.++++|.+.|+.+++.+|+ +..+...+..+.........-.+++
T Consensus 411 aL~Da~~~ieL--~p~~~kgy~RKg~al~---~mk~ydkAleay~eale~dp~--~~e~~~~~~rc~~a~~~~~~~ee~~ 483 (539)
T KOG0548|consen 411 ALKDAKKCIEL--DPNFIKAYLRKGAALR---AMKEYDKALEAYQEALELDPS--NAEAIDGYRRCVEAQRGDETPEETK 483 (539)
T ss_pred HHHHHHHHHhc--CchHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCch--hHHHHHHHHHHHHHhhcCCCHHHHH
Confidence 99999999998 8999999988665443 236799999999999999998 6666666666665533233333445
Q ss_pred HH
Q 003918 648 DQ 649 (786)
Q Consensus 648 ~~ 649 (786)
++
T Consensus 484 ~r 485 (539)
T KOG0548|consen 484 RR 485 (539)
T ss_pred Hh
Confidence 54
No 76
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.65 E-value=7.9e-14 Score=138.54 Aligned_cols=202 Identities=17% Similarity=0.153 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 003918 461 ASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYER 540 (786)
Q Consensus 461 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 540 (786)
...+..++..+...|++++|...+++++...| .+...+..++.++...|++++|...|++
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p--------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~ 90 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDP--------------------DDYLAYLALALYYQQLGELEKAEDSFRR 90 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--------------------ccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 36677777777778888888888888877777 5667777777777778888888888888
Q ss_pred HHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCc
Q 003918 541 ILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPA 620 (786)
Q Consensus 541 al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 620 (786)
+++..|.++.++..++.++...|++++|+..+++++.....|.....|..++..+. ..|++++|...|+++++..|+
T Consensus 91 al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~ 167 (234)
T TIGR02521 91 ALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCAL---KAGDFDKAEKYLTRALQIDPQ 167 (234)
T ss_pred HHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCcC
Confidence 88887877778888888888888888888888887764223444445554433332 346777777777777777776
Q ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHHh
Q 003918 621 DAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIES 689 (786)
Q Consensus 621 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 689 (786)
+...+..++.++...|++++|...++++++..|.++... ......+...|+.++|+.+.+.+...
T Consensus 168 --~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 168 --RPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESL--WLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred --ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 456677777777777777777777777777655433222 22333334566777777666665443
No 77
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=4.2e-12 Score=124.42 Aligned_cols=298 Identities=13% Similarity=0.051 Sum_probs=248.1
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhH
Q 003918 428 AFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPV 507 (786)
Q Consensus 428 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 507 (786)
.+|.++.-......+...|-.-....|+++ .+...++.++...|++++|+..|+++..++|
T Consensus 203 a~Aq~~~~~hs~a~~t~l~le~~~~lr~Nv----hLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dp--------------- 263 (564)
T KOG1174|consen 203 ALAQMFNFKHSDASQTFLMLHDNTTLRCNE----HLMMALGKCLYYNGDYFQAEDIFSSTLCANP--------------- 263 (564)
T ss_pred HHHHHHhcccchhhhHHHHHHhhccCCccH----HHHHHHhhhhhhhcCchHHHHHHHHHhhCCh---------------
Confidence 345444444445555666666777889998 8999999999999999999999999999999
Q ss_pred HHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHH
Q 003918 508 QMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDI 587 (786)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~ 587 (786)
......-.|+.++...|++++-..+-.+.+.+......-|+--+...+..++++.|+..-+++|.. +|.+..+
T Consensus 264 -----y~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--~~r~~~a 336 (564)
T KOG1174|consen 264 -----DNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDS--EPRNHEA 336 (564)
T ss_pred -----hhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--CcccchH
Confidence 566777788888889999999999999999988788888999999999999999999999999997 7999888
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHH-H
Q 003918 588 WVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEI-Y 666 (786)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~-~ 666 (786)
+..-+..+. ..+..++|.-.|..|....|. ....|..+...|...|.+.+|.-+-..+++..|.+....-..+ .
T Consensus 337 lilKG~lL~---~~~R~~~A~IaFR~Aq~Lap~--rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~ 411 (564)
T KOG1174|consen 337 LILKGRLLI---ALERHTQAVIAFRTAQMLAPY--RLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTL 411 (564)
T ss_pred HHhccHHHH---hccchHHHHHHHHHHHhcchh--hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcce
Confidence 887665554 458899999999999999998 7889999999999999999999999999999998754433322 2
Q ss_pred HHHHHHhcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHc
Q 003918 667 IARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNH 746 (786)
Q Consensus 667 ~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~ 746 (786)
+.. ..--.-++|...+++++.. .|. ...+.+..+.++..-|.+..++.++++.+.. -|| ..+-..++++....
T Consensus 412 V~~-~dp~~rEKAKkf~ek~L~~-~P~--Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~-~~D--~~LH~~Lgd~~~A~ 484 (564)
T KOG1174|consen 412 VLF-PDPRMREKAKKFAEKSLKI-NPI--YTPAVNLIAELCQVEGPTKDIIKLLEKHLII-FPD--VNLHNHLGDIMRAQ 484 (564)
T ss_pred eec-cCchhHHHHHHHHHhhhcc-CCc--cHHHHHHHHHHHHhhCccchHHHHHHHHHhh-ccc--cHHHHHHHHHHHHh
Confidence 211 1122457899999999999 898 6778888999999999999999999999997 565 66788899999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 003918 747 GNEDTFREMLRIKRSVS 763 (786)
Q Consensus 747 G~~~~a~~~~~~~~~~~ 763 (786)
..++++.+.+.+.-+++
T Consensus 485 Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 485 NEPQKAMEYYYKALRQD 501 (564)
T ss_pred hhHHHHHHHHHHHHhcC
Confidence 99999988885444433
No 78
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.63 E-value=1.2e-10 Score=121.10 Aligned_cols=513 Identities=14% Similarity=0.138 Sum_probs=295.2
Q ss_pred chhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHhcCCChHHHHH
Q 003918 81 HPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLR 160 (786)
Q Consensus 81 ~~~~~~A~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~w~~~~~~~~~~~~~~~~A~~ 160 (786)
.++|....++.+..|+..|.+++..-+.+..+-..|+-+.|......++..++.+ +-=|-.++-+.+...++ ++|++
T Consensus 20 ~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S--~vCwHv~gl~~R~dK~Y-~eaiK 96 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKS--HVCWHVLGLLQRSDKKY-DEAIK 96 (700)
T ss_pred HHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCccc--chhHHHHHHHHhhhhhH-HHHHH
Confidence 3789999999999999999999998888888888899999999999999999975 77799999999999999 99999
Q ss_pred HHHHHHccCCCCHHHHH---HHHHhcCCHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHhcccccccCCcHHHHH
Q 003918 161 VYRRYLKYDPSHIEDFI---EFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAII 237 (786)
Q Consensus 161 ~~~~~l~~~p~~~~~~~---~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (786)
+|+.|++..|+|-.-+- -+-++.++++-... .|..+
T Consensus 97 cy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~---------------------tr~~L-------------------- 135 (700)
T KOG1156|consen 97 CYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLE---------------------TRNQL-------------------- 135 (700)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHH---------------------HHHHH--------------------
Confidence 99999999999863322 11112233322222 12221
Q ss_pred HhhhhccCchhHHHHHHHHHHHHhhccHHHHHHHHHHHhhcc---CchhcHHH----HHHHHHHHHHHHHHHHhcCCCCC
Q 003918 238 RGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTV---VTVRDFSV----IFDSYSQFEEIMVSAKMAKPDLS 310 (786)
Q Consensus 238 ~~~~~~~p~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~---p~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 310 (786)
++..|.. -..|..+|.-+.-.|++..|..+.+...... |+..++.. ++...
T Consensus 136 ---Lql~~~~-ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~------------------ 193 (700)
T KOG1156|consen 136 ---LQLRPSQ-RASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQ------------------ 193 (700)
T ss_pred ---HHhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHH------------------
Confidence 2233333 5679999999999999999998888776543 32221100 00000
Q ss_pred CcccccccccCCcchhhhHhhhhhhHHHHHHhHhcccccCccchHHHHHHHHHhhhhhchhhhhhhhhhcCCCCHHHHHH
Q 003918 311 VEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHR 390 (786)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~ 390 (786)
T Consensus 194 -------------------------------------------------------------------------------- 193 (700)
T KOG1156|consen 194 -------------------------------------------------------------------------------- 193 (700)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhcCCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHH
Q 003918 391 RVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEM 470 (786)
Q Consensus 391 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~ 470 (786)
.....|.+++|.+....- .+ ...+....-...+.++++.+++++|..+|...+..+|++. ..+..+-..
T Consensus 194 -i~~E~g~~q~ale~L~~~----e~--~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~----~Yy~~l~~~ 262 (700)
T KOG1156|consen 194 -ILIEAGSLQKALEHLLDN----EK--QIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNL----DYYEGLEKA 262 (700)
T ss_pred -HHHHcccHHHHHHHHHhh----hh--HHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhH----HHHHHHHHH
Confidence 000112233333322221 11 0112344456678889999999999999999999999987 444444333
Q ss_pred HHhccCHHHHH-HHHHHHhcCCchHH-hhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--cc
Q 003918 471 ELRHKNFKGAL-ELMRRATAEPSVEV-RRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDL--RI 546 (786)
Q Consensus 471 ~~~~g~~~~A~-~~~~~al~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p 546 (786)
+.+-.+.-++. .+|...-+.+|... ..|.. ..+... .+-....-.+..-..+.|- ..+|...... +|
T Consensus 263 lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlp----lsvl~~-eel~~~vdkyL~~~l~Kg~----p~vf~dl~SLyk~p 333 (700)
T KOG1156|consen 263 LGKIKDMLEALKALYAILSEKYPRHECPRRLP----LSVLNG-EELKEIVDKYLRPLLSKGV----PSVFKDLRSLYKDP 333 (700)
T ss_pred HHHHhhhHHHHHHHHHHHhhcCcccccchhcc----HHHhCc-chhHHHHHHHHHHHhhcCC----CchhhhhHHHHhch
Confidence 32222223333 55555555444110 00000 000000 0000111111111111111 0111111111 22
Q ss_pred CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHH
Q 003918 547 ATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPL 626 (786)
Q Consensus 547 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 626 (786)
..+.+.-.++.-|.+.=....+.......- ..|....+|..|.... .....|+++.|..+...|+...|. -++.
T Consensus 334 ~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~---~E~PttllWt~y~laq-h~D~~g~~~~A~~yId~AIdHTPT--liEl 407 (700)
T KOG1156|consen 334 EKVAFLEKLVTSYQHSLSGTGMFNFLDDGK---QEPPTTLLWTLYFLAQ-HYDKLGDYEVALEYIDLAIDHTPT--LIEL 407 (700)
T ss_pred hHhHHHHHHHHHHHhhcccccCCCcccccc---cCCchHHHHHHHHHHH-HHHHcccHHHHHHHHHHHhccCch--HHHH
Confidence 222222222222222100000000000000 1266677888764322 223568899999999999999998 7888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCC----hhHHHHHHH
Q 003918 627 YLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPD----KDVKAMCLK 702 (786)
Q Consensus 627 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~----~~~~~~~~~ 702 (786)
+..-|.+..-.|++++|...++.+-+.+-. +..+..-++..-.+.+..++|.++..+-.+.|... +..--+|+.
T Consensus 408 y~~KaRI~kH~G~l~eAa~~l~ea~elD~a--DR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~ 485 (700)
T KOG1156|consen 408 YLVKARIFKHAGLLDEAAAWLDEAQELDTA--DRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQ 485 (700)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhccch--hHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHh
Confidence 888899998899999999999998877643 34444445555567788899988887766653210 001125655
Q ss_pred H--HHHHHHcCChHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhhhhHHH
Q 003918 703 Y--AELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASYSQVIYF 772 (786)
Q Consensus 703 ~--~~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~G~~~~a~~~~~~~~~~~~~~~~~~~~ 772 (786)
+ |..+.++|.+-.|.+=|...-.+. -++ .+---++-.+.++.|.+....++++ =.+..++...|+
T Consensus 486 ~E~g~ay~r~~k~g~ALKkfh~i~k~~-~~~-~~dqfDfhtyc~rk~tlrsYv~ll~---~~d~L~~~p~y~ 552 (700)
T KOG1156|consen 486 LEDGEAYLRQNKLGLALKKFHEIEKHY-KTW-SEDQFDFHTYCMRKGTLRSYVELLE---WEDNLRSSPYYL 552 (700)
T ss_pred HhhhHHHHHHHHHHHHHHHHhhHHHHH-HHH-hhhhhhHHHHHHhcCcHHHHHHHHH---HHHhhccChHHH
Confidence 5 667788888877666555443320 110 1222234556778899988888884 334445444444
No 79
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.63 E-value=5.4e-14 Score=144.12 Aligned_cols=260 Identities=13% Similarity=0.146 Sum_probs=214.3
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 003918 465 CEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDL 544 (786)
Q Consensus 465 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 544 (786)
+..|..++++|++.+|.=.|+.++..+| .+.++|..+|.+....++-..|+.++++++++
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP--------------------~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L 348 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDP--------------------QHAEAWQKLGITQAENENEQNAISALRRCLEL 348 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhCh--------------------HHHHHHHHhhhHhhhccchHHHHHHHHHHHhc
Confidence 4566777899999999999999999999 78999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHh-------CCCChHHHHHHHHHHHhh
Q 003918 545 RIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRY-------GKTKLERARELFENAVET 617 (786)
Q Consensus 545 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~-------~~~~~~~A~~~~~~al~~ 617 (786)
+|++-+++..+|.-|...|.-.+|+.++++-+.. .|... |..... --... ....+....++|-.+...
T Consensus 349 dP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~--~p~y~--~l~~a~-~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~ 423 (579)
T KOG1125|consen 349 DPTNLEALMALAVSYTNEGLQNQALKMLDKWIRN--KPKYV--HLVSAG-ENEDFENTKSFLDSSHLAHIQELFLEAARQ 423 (579)
T ss_pred CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--Cccch--hccccC-ccccccCCcCCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999986 34332 221100 00000 011245677778888888
Q ss_pred CCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChhHH
Q 003918 618 APADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVK 697 (786)
Q Consensus 618 ~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~ 697 (786)
.|...++.+...+|.++...|++++|+..|+.+|+..|. +..+|..++..........+|+..|.+|+++ .|. ..
T Consensus 424 ~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn--d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL-qP~--yV 498 (579)
T KOG1125|consen 424 LPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN--DYLLWNRLGATLANGNRSEEAISAYNRALQL-QPG--YV 498 (579)
T ss_pred CCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc--hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc-CCC--ee
Confidence 885447899999999999999999999999999999998 6777888887655667789999999999999 998 88
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHccCCCC---------CCHHHHHHHHHHHHHcCCHHHHHHH
Q 003918 698 AMCLKYAELEKSLGEIDRARGIYVFASQFADPR---------SDTEFWNRWHEFEVNHGNEDTFREM 755 (786)
Q Consensus 698 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~---------~~~~~~~~~~~~~~~~G~~~~a~~~ 755 (786)
++++++|..+...|.+.+|.+.|-.|+... +. .+..+|..+-.+....++.+.+.+.
T Consensus 499 R~RyNlgIS~mNlG~ykEA~~hlL~AL~mq-~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 499 RVRYNLGISCMNLGAYKEAVKHLLEALSMQ-RKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred eeehhhhhhhhhhhhHHHHHHHHHHHHHhh-hcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 899999999999999999999999999862 22 1246999988877777776644433
No 80
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.63 E-value=4.1e-12 Score=120.91 Aligned_cols=278 Identities=11% Similarity=0.101 Sum_probs=215.7
Q ss_pred HHHHhhcCCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCCh-hhHHHHHHHHH
Q 003918 390 RRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTV-DHLASIWCEWA 468 (786)
Q Consensus 390 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~a 468 (786)
++--++++++++|+..|...++ .+| ...++...+|+++.+.|..|.|+.+-...+.. |+.+ ....-+...++
T Consensus 42 GlNfLLs~Q~dKAvdlF~e~l~-~d~-----~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~ 114 (389)
T COG2956 42 GLNFLLSNQPDKAVDLFLEMLQ-EDP-----ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLG 114 (389)
T ss_pred HHHHHhhcCcchHHHHHHHHHh-cCc-----hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 3334456889999999999994 666 67899999999999999999999998887764 4433 33345667888
Q ss_pred HHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCC
Q 003918 469 EMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIAT 548 (786)
Q Consensus 469 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 548 (786)
.-+...|-++.|.++|...+..+. -...+...+..+|....++++|+++-++..+..+..
T Consensus 115 ~Dym~aGl~DRAE~~f~~L~de~e--------------------fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~ 174 (389)
T COG2956 115 RDYMAAGLLDRAEDIFNQLVDEGE--------------------FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQT 174 (389)
T ss_pred HHHHHhhhhhHHHHHHHHHhcchh--------------------hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcc
Confidence 888999999999999999988766 345677778888988999999999999888887665
Q ss_pred -----HHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCc
Q 003918 549 -----PQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAV 623 (786)
Q Consensus 549 -----~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 623 (786)
...+..++.-+....+.+.|+..+.+|+.. +|....+-...+.... ..|++++|++.++++++.+|.= .
T Consensus 175 ~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~---~~g~y~~AV~~~e~v~eQn~~y-l 248 (389)
T COG2956 175 YRVEIAQFYCELAQQALASSDVDRARELLKKALQA--DKKCVRASIILGRVEL---AKGDYQKAVEALERVLEQNPEY-L 248 (389)
T ss_pred chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--CccceehhhhhhHHHH---hccchHHHHHHHHHHHHhChHH-H
Confidence 345677777777788899999999999996 7888877776555443 5689999999999999998862 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChhHHHHHHHH
Q 003918 624 KPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKY 703 (786)
Q Consensus 624 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~ 703 (786)
..+...+..+|...|+.++....+.++.+..++.........+ .....+.+.|..+..+-+.. .|. ...+..+
T Consensus 249 ~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~l---ie~~~G~~~Aq~~l~~Ql~r-~Pt---~~gf~rl 321 (389)
T COG2956 249 SEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADL---IELQEGIDAAQAYLTRQLRR-KPT---MRGFHRL 321 (389)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHH---HHHhhChHHHHHHHHHHHhh-CCc---HHHHHHH
Confidence 5677778888889999999999999999988864333333222 23566788888888888888 786 3455555
Q ss_pred HHHH
Q 003918 704 AELE 707 (786)
Q Consensus 704 ~~~~ 707 (786)
....
T Consensus 322 ~~~~ 325 (389)
T COG2956 322 MDYH 325 (389)
T ss_pred HHhh
Confidence 4443
No 81
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.62 E-value=1.8e-13 Score=152.20 Aligned_cols=255 Identities=16% Similarity=0.216 Sum_probs=213.2
Q ss_pred HHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHh-ccCCChhhHHHHHHHHHHHHHhccCHHHHH
Q 003918 403 ILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQ-VNYKTVDHLASIWCEWAEMELRHKNFKGAL 481 (786)
Q Consensus 403 ~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~ 481 (786)
.+-|++.+. -+| ++...|+.|..++.+.++.++||+++++||. +++..-++.-.+|..|.+++...|.-+.-.
T Consensus 1444 aeDferlvr-ssP-----NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~ 1517 (1710)
T KOG1070|consen 1444 AEDFERLVR-SSP-----NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLK 1517 (1710)
T ss_pred HHHHHHHHh-cCC-----CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHH
Confidence 455777663 455 7889999999999999999999999999997 667666666799999999999999999999
Q ss_pred HHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHH
Q 003918 482 ELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEE 561 (786)
Q Consensus 482 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 561 (786)
++|+||.+... ....+..+..+|...+.++.|.++|+.+++...+.+.+|..|+.++.+
T Consensus 1518 kVFeRAcqycd---------------------~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~ 1576 (1710)
T KOG1070|consen 1518 KVFERACQYCD---------------------AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLR 1576 (1710)
T ss_pred HHHHHHHHhcc---------------------hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 99999998655 357788889999999999999999999999988999999999999999
Q ss_pred cccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHH
Q 003918 562 HKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAK 641 (786)
Q Consensus 562 ~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~ 641 (786)
+++-+.|..++.+|++..+...+..+...++..-+ ..|+.+.+|.+|+-.+...|. ...+|.-|++++.++|+.+
T Consensus 1577 ~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF---k~GDaeRGRtlfEgll~ayPK--RtDlW~VYid~eik~~~~~ 1651 (1710)
T KOG1070|consen 1577 QNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF---KYGDAERGRTLFEGLLSAYPK--RTDLWSVYIDMEIKHGDIK 1651 (1710)
T ss_pred ccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh---hcCCchhhHHHHHHHHhhCcc--chhHHHHHHHHHHccCCHH
Confidence 99999999999999998522236666665543322 558999999999999999999 5789999999999999999
Q ss_pred HHHHHHHHHHhcCCCC-chhhHHHHHHHHHHHhcChhHHHHHHHHHHHh
Q 003918 642 RAMKVYDQATKAVPNH-EKLGMYEIYIARAAEIFGVPKTREIYEQAIES 689 (786)
Q Consensus 642 ~A~~~~~~~l~~~p~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 689 (786)
.++.+|++++.+.-.- ..-.++..|++++.+.|+-..+..+=.+|.+.
T Consensus 1652 ~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~EY 1700 (1710)
T KOG1070|consen 1652 YVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARAKEY 1700 (1710)
T ss_pred HHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 9999999999765432 33357888888887778876665555555543
No 82
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.61 E-value=4.7e-14 Score=133.72 Aligned_cols=227 Identities=15% Similarity=0.155 Sum_probs=198.7
Q ss_pred CCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccC
Q 003918 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKN 476 (786)
Q Consensus 397 ~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~ 476 (786)
|.+.+|.+.++.+++. .| .++.+..+++.|.+.+++..|..+|...+...|.++ ......+.++...++
T Consensus 237 gm~r~AekqlqssL~q-~~------~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~V----T~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 237 GMPRRAEKQLQSSLTQ-FP------HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDV----TYLLGQARIHEAMEQ 305 (478)
T ss_pred cChhhhHHHHHHHhhc-CC------chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchh----hhhhhhHHHHHHHHh
Confidence 8999999999999954 33 578889999999999999999999999999999998 888999999999999
Q ss_pred HHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHH
Q 003918 477 FKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYA 556 (786)
Q Consensus 477 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 556 (786)
.++|.++|+.+++..| .+++.....+.-|.--++++-|...|+++++....+|+++.++|
T Consensus 306 ~~~a~~lYk~vlk~~~--------------------~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~Nig 365 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLHP--------------------INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIG 365 (478)
T ss_pred HHHHHHHHHHHHhcCC--------------------ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHH
Confidence 9999999999999988 44444333344444568999999999999999999999999999
Q ss_pred HHHHHcccHHHHHHHHHHHHhhcCCCC-hHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHH
Q 003918 557 LLLEEHKYFEDAFRVYERGVKIFKYPH-VKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEE 635 (786)
Q Consensus 557 ~~~~~~g~~~~A~~~~~~al~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~ 635 (786)
.+....++++-++..|+|++....+|. -.++|.+++.... +-|++.-|...|.-++..+|+ +.+.+.+++.+..
T Consensus 366 LCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV---~iGD~nlA~rcfrlaL~~d~~--h~ealnNLavL~~ 440 (478)
T KOG1129|consen 366 LCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAV---TIGDFNLAKRCFRLALTSDAQ--HGEALNNLAVLAA 440 (478)
T ss_pred HHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEE---eccchHHHHHHHHHHhccCcc--hHHHHHhHHHHHh
Confidence 999999999999999999999865554 4579998543332 558999999999999999999 7899999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCch
Q 003918 636 DYGLAKRAMKVYDQATKAVPNHEK 659 (786)
Q Consensus 636 ~~g~~~~A~~~~~~~l~~~p~~~~ 659 (786)
+.|+++.|++++..+-...|.-.+
T Consensus 441 r~G~i~~Arsll~~A~s~~P~m~E 464 (478)
T KOG1129|consen 441 RSGDILGARSLLNAAKSVMPDMAE 464 (478)
T ss_pred hcCchHHHHHHHHHhhhhCccccc
Confidence 999999999999999999997433
No 83
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.59 E-value=2.2e-11 Score=126.41 Aligned_cols=361 Identities=16% Similarity=0.195 Sum_probs=214.6
Q ss_pred HHHHHHhhhhhchhhhhhhhhhcCCCCHHHHHHHHHhhc--CCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHH
Q 003918 358 RLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYET 435 (786)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~ 435 (786)
.+..|+.-.-+...-+.+.+++..|...+..-..|-.+. |+.++|......+++ .++ .+...|..+|.++..
T Consensus 14 ~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr-~d~-----~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 14 ALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLR-NDL-----KSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhc-cCc-----ccchhHHHHHHHHhh
Confidence 344455444444455566678899999988877777665 889999999999994 566 788999999999999
Q ss_pred cCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcH
Q 003918 436 YKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSL 515 (786)
Q Consensus 436 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (786)
..++++|+++|..|+...|++. ++|..++.+..+.++++.....-.+.++..| ...
T Consensus 88 dK~Y~eaiKcy~nAl~~~~dN~----qilrDlslLQ~QmRd~~~~~~tr~~LLql~~--------------------~~r 143 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKDNL----QILRDLSLLQIQMRDYEGYLETRNQLLQLRP--------------------SQR 143 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh--------------------hhH
Confidence 9999999999999999999997 9999999999999999999988888888888 445
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhc---cC---------------------------------------CHHHHH
Q 003918 516 RLWTFYVDLEESLGNLESTRAVYERILDLR---IA---------------------------------------TPQIII 553 (786)
Q Consensus 516 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~---------------------------------------~~~~~~ 553 (786)
..|..++..+...|++..|..+.+...+.. |+ ....-.
T Consensus 144 a~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e 223 (700)
T KOG1156|consen 144 ASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEE 223 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhh
Confidence 566666666666666666665555444432 11 111222
Q ss_pred HHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHH--------
Q 003918 554 NYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKP-------- 625 (786)
Q Consensus 554 ~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-------- 625 (786)
..+.++.+.|++++|..+|...+.. +|++..-+..+...+- .. .+.......+|...-+..|....+.
T Consensus 224 ~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lg-k~-~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~ 299 (700)
T KOG1156|consen 224 TKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALG-KI-KDMLEALKALYAILSEKYPRHECPRRLPLSVLN 299 (700)
T ss_pred hHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHH-HH-hhhHHHHHHHHHHHhhcCcccccchhccHHHhC
Confidence 2355555555666666666666553 4555443333221110 00 0112222244444444433311100
Q ss_pred ------HHHHHHHHHHHcC-------------CH------HHHHHHHHHHHhcC---C-------CCchhhHHHHHH--H
Q 003918 626 ------LYLQYAKLEEDYG-------------LA------KRAMKVYDQATKAV---P-------NHEKLGMYEIYI--A 668 (786)
Q Consensus 626 ------~~~~~a~~~~~~g-------------~~------~~A~~~~~~~l~~~---p-------~~~~~~~~~~~~--~ 668 (786)
....+..-..+.| +. ++-+..|...+.-. + ..|...+|..+. .
T Consensus 300 ~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laq 379 (700)
T KOG1156|consen 300 GEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQ 379 (700)
T ss_pred cchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHH
Confidence 0000000001111 00 11111111111111 0 011222333333 2
Q ss_pred HHHHhcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHcCC
Q 003918 669 RAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGN 748 (786)
Q Consensus 669 ~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~G~ 748 (786)
.+...|+++.|..+++.|+.. .|. .++.++.-|+++.+.|+++.|..+++.+.+...|| ..+-..-+.+..+..+
T Consensus 380 h~D~~g~~~~A~~yId~AIdH-TPT--liEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aD--R~INsKcAKYmLrAn~ 454 (700)
T KOG1156|consen 380 HYDKLGDYEVALEYIDLAIDH-TPT--LIELYLVKARIFKHAGLLDEAAAWLDEAQELDTAD--RAINSKCAKYMLRANE 454 (700)
T ss_pred HHHHcccHHHHHHHHHHHhcc-Cch--HHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchh--HHHHHHHHHHHHHccc
Confidence 344567777777777777777 666 56666666777777777777777777777753333 3333356666667777
Q ss_pred HHHHHHHHH
Q 003918 749 EDTFREMLR 757 (786)
Q Consensus 749 ~~~a~~~~~ 757 (786)
.++|.+++-
T Consensus 455 i~eA~~~~s 463 (700)
T KOG1156|consen 455 IEEAEEVLS 463 (700)
T ss_pred cHHHHHHHH
Confidence 777766663
No 84
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=99.58 E-value=6.6e-10 Score=112.37 Aligned_cols=130 Identities=16% Similarity=0.282 Sum_probs=100.9
Q ss_pred hhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc-----------CCCC-CchhHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 003918 43 KKRFVIYERALKALPGSYKLWHAYLIERLSIVK-----------NLPI-THPEYETLNNTFERALVTMHKMPRIWIMYLE 110 (786)
Q Consensus 43 ~~~~~~~~~al~~~P~~~~~w~~~~~~~~~~~~-----------~~~~-~~~~~~~A~~~~~~al~~~p~~~~~w~~~~~ 110 (786)
..++ -|+--|++--.+..-.+.|+.++..... ...+ ...-......+|++|+...+.++.+|..|+.
T Consensus 35 k~Rr-~fE~kL~rr~~~i~Dfi~YI~YE~nl~~lr~kR~Kk~~~k~S~sd~si~~rIv~lyr~at~rf~~D~~lW~~yi~ 113 (568)
T KOG2396|consen 35 KKRR-DFELKLQRRTLSIEDFINYIQYEINLEELRAKRRKKKRVKYSFSDDSIPNRIVFLYRRATNRFNGDVKLWLSYIA 113 (568)
T ss_pred HHHH-HHHHHHccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 3444 3455555555567778888888755421 0001 1133455778999999999999999999999
Q ss_pred HHHcCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHhcCCChHHHHHHHHHHHccCCCCHHH
Q 003918 111 TLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIED 175 (786)
Q Consensus 111 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~w~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 175 (786)
++.+.+.+....++|.+++..+|.+ +.+|...+.++...+..++.|+.+|.++|+.+|+++.-
T Consensus 114 f~kk~~~~~~v~ki~~~~l~~Hp~~--~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~L 176 (568)
T KOG2396|consen 114 FCKKKKTYGEVKKIFAAMLAKHPNN--PDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKL 176 (568)
T ss_pred HHHHhcchhHHHHHHHHHHHhCCCC--chhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHH
Confidence 9999888999999999999999976 99999999888776664499999999999999998743
No 85
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.58 E-value=2e-13 Score=139.94 Aligned_cols=234 Identities=13% Similarity=0.189 Sum_probs=179.4
Q ss_pred CHHHHHHHHHhhc-CCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHH
Q 003918 384 NVEQWHRRVKIFE-GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLAS 462 (786)
Q Consensus 384 ~~~~~~~~~~~~~-~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 462 (786)
.++.+..-..++. |+..+|.-.|+.+++ .+| ....+|..+|......++-..|+..+++|++++|++. .
T Consensus 285 ~pdPf~eG~~lm~nG~L~~A~LafEAAVk-qdP-----~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~Nl----e 354 (579)
T KOG1125|consen 285 HPDPFKEGCNLMKNGDLSEAALAFEAAVK-QDP-----QHAEAWQKLGITQAENENEQNAISALRRCLELDPTNL----E 354 (579)
T ss_pred CCChHHHHHHHHhcCCchHHHHHHHHHHh-hCh-----HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccH----H
Confidence 4445544444443 888889999999985 566 6889999999888888888889999999999999887 7
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHH---------cCChHH
Q 003918 463 IWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEES---------LGNLES 533 (786)
Q Consensus 463 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~g~~~~ 533 (786)
+...++-.+...|.-.+|.+++.+=+...|. ..|..-+.-... ......
T Consensus 355 aLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~----------------------y~~l~~a~~~~~~~~~~s~~~~~~l~~ 412 (579)
T KOG1125|consen 355 ALMALAVSYTNEGLQNQALKMLDKWIRNKPK----------------------YVHLVSAGENEDFENTKSFLDSSHLAH 412 (579)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhCcc----------------------chhccccCccccccCCcCCCCHHHHHH
Confidence 7788888888888888899888888766651 111111100000 012334
Q ss_pred HHHHHHHHHhhcc--CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHH
Q 003918 534 TRAVYERILDLRI--ATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELF 611 (786)
Q Consensus 534 A~~~~~~al~~~p--~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 611 (786)
..+.|-.+-...| .+|++...+|.+|.-.|+|++|+.+|+.|+.. .|.+..+|+.++..+. ......+|+..|
T Consensus 413 i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v--~Pnd~~lWNRLGAtLA---N~~~s~EAIsAY 487 (579)
T KOG1125|consen 413 IQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV--KPNDYLLWNRLGATLA---NGNRSEEAISAY 487 (579)
T ss_pred HHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhc--CCchHHHHHHhhHHhc---CCcccHHHHHHH
Confidence 4566667767777 78889999999999999999999999999985 7999999998776664 345678899999
Q ss_pred HHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 003918 612 ENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPN 656 (786)
Q Consensus 612 ~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~ 656 (786)
.||+++-|+ -+.+++++|..+...|.+.+|.++|-.+|...+.
T Consensus 488 ~rALqLqP~--yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 488 NRALQLQPG--YVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred HHHHhcCCC--eeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 999999998 7788899999888999999999999888877665
No 86
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=99.57 E-value=2.6e-10 Score=118.74 Aligned_cols=502 Identities=17% Similarity=0.224 Sum_probs=294.5
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhc-----cCCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcHHHHHH
Q 003918 49 YERALKALPGSYKLWHAYLIERLSIV-----KNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARR 123 (786)
Q Consensus 49 ~~~al~~~P~~~~~w~~~~~~~~~~~-----~~~~~~~~~~~~A~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~~~A~~ 123 (786)
....+...|++.++|-.....-+.-. ........+.+.++.+|...|...|..-..|..+|..+.+.|....+.+
T Consensus 21 ~n~~~~~~p~~~~~we~~~~~~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~ 100 (577)
T KOG1258|consen 21 DNTSLTKYPDSLDYWEILSNDSLDFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVK 100 (577)
T ss_pred cchhhhhCcchhhHhhccccchhcccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHH
Confidence 45666777777777754433221110 0011122556888999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCcchhhHHHHHHHHHh-cCCChHHHHHHHHHHHccCCCCHHHHHHHHHhcCCHHHHHHHHHHHhcCCCc
Q 003918 124 TFDRALCALPVTQHDRIWEIYLRFVEQ-EGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQF 202 (786)
Q Consensus 124 ~~~~al~~~p~~~~~~~w~~~~~~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~ 202 (786)
+|+++++-.|.+ ..+|..|..++.. .++. ++.+..|++|+...-.+.
T Consensus 101 Vfergv~aip~S--vdlW~~Y~~f~~n~~~d~-~~lr~~fe~A~~~vG~dF----------------------------- 148 (577)
T KOG1258|consen 101 VFERGVQAIPLS--VDLWLSYLAFLKNNNGDP-ETLRDLFERAKSYVGLDF----------------------------- 148 (577)
T ss_pred HHHHHHHhhhhH--HHHHHHHHHHHhccCCCH-HHHHHHHHHHHHhcccch-----------------------------
Confidence 999999999965 8999999988754 4666 778888888887543322
Q ss_pred cccCCCcchHHHHHHHHHHhcccccccCCcHHHHHHhhhhccCchhHHHHHHHHHHHHhhccHHHHHHHHHHHhhccCch
Q 003918 203 YSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTV 282 (786)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~p~~ 282 (786)
-+..+|..++.++ ..+++......+|++.++. |.
T Consensus 149 ------~S~~lWdkyie~e--------------------------------------n~qks~k~v~~iyeRilei-P~- 182 (577)
T KOG1258|consen 149 ------LSDPLWDKYIEFE--------------------------------------NGQKSWKRVANIYERILEI-PL- 182 (577)
T ss_pred ------hccHHHHHHHHHH--------------------------------------hccccHHHHHHHHHHHHhh-hh-
Confidence 0112444444333 3334444455566666643 32
Q ss_pred hcHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhHhcccccCccchHHHHHHHH
Q 003918 283 RDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARL 362 (786)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (786)
..+...|..|.++.+...... . ...
T Consensus 183 ~~~~~~f~~f~~~l~~~~~~~----------------------------------------------------l---~~~ 207 (577)
T KOG1258|consen 183 HQLNRHFDRFKQLLNQNEEKI----------------------------------------------------L---LSI 207 (577)
T ss_pred hHhHHHHHHHHHHHhcCChhh----------------------------------------------------h---cCH
Confidence 123344444444332100000 0 000
Q ss_pred HhhhhhchhhhhhhhhhcCCCCHHHHHHHHHhhcCCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHH
Q 003918 363 EHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANA 442 (786)
Q Consensus 363 ~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A 442 (786)
+...+.+.....+ ...+. .+... +..+..++.+. ...+..+.+
T Consensus 208 d~~~~l~~~~~~~---~~~~~------------~~~~~---e~~~~~v~~~~-------------------~~s~~l~~~ 250 (577)
T KOG1258|consen 208 DELIQLRSDVAER---SKITH------------SQEPL---EELEIGVKDST-------------------DPSKSLTEE 250 (577)
T ss_pred HHHHHHhhhHHhh---hhccc------------ccChh---HHHHHHHhhcc-------------------CccchhhHH
Confidence 0000000000000 00000 00000 11111111100 011222333
Q ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHH
Q 003918 443 RVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYV 522 (786)
Q Consensus 443 ~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (786)
.....+.+.. .-.++.......+.+..|+..+..+-..+ ..-.......|..|.
T Consensus 251 ~~~l~~~~~~--------------~~~~~~~s~~~~~kr~~fE~~IkrpYfhv------------kpl~~aql~nw~~yL 304 (577)
T KOG1258|consen 251 KTILKRIVSI--------------HEKVYQKSEEEEEKRWGFEEGIKRPYFHV------------KPLDQAQLKNWRYYL 304 (577)
T ss_pred HHHHHHHHHH--------------HHHHHHhhHhHHHHHHhhhhhcccccccc------------CcccHHHHHHHHHHh
Confidence 3333332221 11112223344455556666665543111 000013457799999
Q ss_pred HHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCC
Q 003918 523 DLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKT 602 (786)
Q Consensus 523 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~ 602 (786)
++....|+++...-.|++++--+...+..|..++......|+.+-|-.++.++.+.+ .|..+.+...++.+ .++ .|
T Consensus 305 df~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~-~k~~~~i~L~~a~f-~e~--~~ 380 (577)
T KOG1258|consen 305 DFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIH-VKKTPIIHLLEARF-EES--NG 380 (577)
T ss_pred hhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc-CCCCcHHHHHHHHH-HHh--hc
Confidence 999999999999999999999888999999999999999999999999999999885 67777777766543 332 47
Q ss_pred ChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHH-HHHHHH----HHHhcChh
Q 003918 603 KLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMY-EIYIAR----AAEIFGVP 677 (786)
Q Consensus 603 ~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~-~~~~~~----~~~~~~~~ 677 (786)
++..|+.+++++.+..|+ ...+-...+.++.+.|+.+.+....+......+......+. ..++.. ..-.++.+
T Consensus 381 n~~~A~~~lq~i~~e~pg--~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~ 458 (577)
T KOG1258|consen 381 NFDDAKVILQRIESEYPG--LVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDAD 458 (577)
T ss_pred cHHHHHHHHHHHHhhCCc--hhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHH
Confidence 899999999999999988 67788888999999999999884222222222322111111 111111 12247889
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHccC-CCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003918 678 KTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGE---IDRARGIYVFASQFA-DPRSDTEFWNRWHEFEVNHGNEDTFR 753 (786)
Q Consensus 678 ~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~---~~~A~~~~~~al~~~-~p~~~~~~~~~~~~~~~~~G~~~~a~ 753 (786)
.|+.++..++.. .|. +...|..+.++....+- .+--..++...+... +++.....-+.++.+..-.|......
T Consensus 459 ~a~~~l~~~~~~-~~~--~k~~~~~~~~~~~~~~~~~e~d~~e~~~~~~~~~~~~~~~~~~~~~k~~ef~e~~g~~~~~~ 535 (577)
T KOG1258|consen 459 LARIILLEANDI-LPD--CKVLYLELIRFELIQPSGREYDLLEPIDWKELKMLIDFDDSRSSTDKYIEFLEWFGIDHKGA 535 (577)
T ss_pred HHHHHHHHhhhc-CCc--cHHHHHHHHHHHHhCCcchhhhhhhhHHHHHHhhhccccccccchHHHHHHHHhccchhHhH
Confidence 999999999999 888 67799999888776652 222223333333321 23322233334566666666655444
Q ss_pred HH
Q 003918 754 EM 755 (786)
Q Consensus 754 ~~ 755 (786)
+.
T Consensus 536 ~~ 537 (577)
T KOG1258|consen 536 QD 537 (577)
T ss_pred hh
Confidence 43
No 87
>PLN02789 farnesyltranstransferase
Probab=99.55 E-value=3e-12 Score=129.99 Aligned_cols=197 Identities=13% Similarity=0.125 Sum_probs=158.2
Q ss_pred HHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcc-CHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHh
Q 003918 433 YETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHK-NFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKL 511 (786)
Q Consensus 433 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 511 (786)
+...+..++|...+.+++..+|++. .+|...+.++...| ++++++..+++++..+|
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~y----taW~~R~~iL~~L~~~l~eeL~~~~~~i~~np------------------- 103 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNY----TVWHFRRLCLEALDADLEEELDFAEDVAEDNP------------------- 103 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhH----HHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-------------------
Confidence 4445678889999999999999987 89998888888887 67999999999999988
Q ss_pred hhcHHHHHHHHHHHHHcCCh--HHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHH
Q 003918 512 HKSLRLWTFYVDLEESLGNL--ESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWV 589 (786)
Q Consensus 512 ~~~~~~~~~~~~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~ 589 (786)
++..+|...+.+....|.. +++..+++++++.+|++..+|...+.++...|+++++++.+.++++. +|.+..+|.
T Consensus 104 -knyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--d~~N~sAW~ 180 (320)
T PLN02789 104 -KNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE--DVRNNSAWN 180 (320)
T ss_pred -cchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--CCCchhHHH
Confidence 7888899888888777763 67889999999999999999999999999999999999999999997 799999998
Q ss_pred HHHHHHHHHhC-CCC----hHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCc
Q 003918 590 TYLSKFVKRYG-KTK----LERARELFENAVETAPADAVKPLYLQYAKLEED----YGLAKRAMKVYDQATKAVPNHE 658 (786)
Q Consensus 590 ~~~~~~~~~~~-~~~----~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~~l~~~p~~~ 658 (786)
... ....+++ .|. .+....+..++|..+|+ +..+|..++.++.. .+...+|.+.+.++++..|.++
T Consensus 181 ~R~-~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~--N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~ 255 (320)
T PLN02789 181 QRY-FVITRSPLLGGLEAMRDSELKYTIDAILANPR--NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHV 255 (320)
T ss_pred HHH-HHHHhccccccccccHHHHHHHHHHHHHhCCC--CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcH
Confidence 754 3332221 011 35678888899999998 56788888888876 3445668888888877666544
No 88
>PLN02789 farnesyltranstransferase
Probab=99.54 E-value=2.9e-12 Score=130.02 Aligned_cols=205 Identities=11% Similarity=0.125 Sum_probs=174.9
Q ss_pred CCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcC-ChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcc
Q 003918 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYK-DIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHK 475 (786)
Q Consensus 397 ~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g 475 (786)
+..++|+..+.++| .++| .+..+|...+.++...| ++++++..+++++..+|++. .+|...+.+..+.|
T Consensus 51 e~serAL~lt~~aI-~lnP-----~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkny----qaW~~R~~~l~~l~ 120 (320)
T PLN02789 51 ERSPRALDLTADVI-RLNP-----GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNY----QIWHHRRWLAEKLG 120 (320)
T ss_pred CCCHHHHHHHHHHH-HHCc-----hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcch----HHhHHHHHHHHHcC
Confidence 67889999999999 5777 78899999999999988 68999999999999999998 89998888887777
Q ss_pred CH--HHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHH
Q 003918 476 NF--KGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIII 553 (786)
Q Consensus 476 ~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 553 (786)
.. +++..+++++++.+| ++..+|...+.+....|+++++++.++++|+.+|++..+|.
T Consensus 121 ~~~~~~el~~~~kal~~dp--------------------kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~ 180 (320)
T PLN02789 121 PDAANKELEFTRKILSLDA--------------------KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWN 180 (320)
T ss_pred chhhHHHHHHHHHHHHhCc--------------------ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHH
Confidence 63 788999999999999 88999999999999999999999999999999999999999
Q ss_pred HHHHHHHHc---ccH----HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhhCCccCcH
Q 003918 554 NYALLLEEH---KYF----EDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYG--KTKLERARELFENAVETAPADAVK 624 (786)
Q Consensus 554 ~~~~~~~~~---g~~----~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~--~~~~~~A~~~~~~al~~~p~~~~~ 624 (786)
..+.+..+. |.+ +++++...+++.. +|++..+|......+. ..+ .+...+|.+.+.+++...|. +.
T Consensus 181 ~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~--~P~N~SaW~Yl~~ll~-~~~~~l~~~~~~~~~~~~~~~~~~~--s~ 255 (320)
T PLN02789 181 QRYFVITRSPLLGGLEAMRDSELKYTIDAILA--NPRNESPWRYLRGLFK-DDKEALVSDPEVSSVCLEVLSKDSN--HV 255 (320)
T ss_pred HHHHHHHhccccccccccHHHHHHHHHHHHHh--CCCCcCHHHHHHHHHh-cCCcccccchhHHHHHHHhhcccCC--cH
Confidence 999887765 323 5788888899997 7999999996554443 211 23456799999999998887 67
Q ss_pred HHHHHHHHHHHH
Q 003918 625 PLYLQYAKLEED 636 (786)
Q Consensus 625 ~~~~~~a~~~~~ 636 (786)
.+...+++++..
T Consensus 256 ~al~~l~d~~~~ 267 (320)
T PLN02789 256 FALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHHh
Confidence 777778888764
No 89
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.53 E-value=5.3e-12 Score=133.59 Aligned_cols=250 Identities=18% Similarity=0.223 Sum_probs=179.3
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003918 462 SIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERI 541 (786)
Q Consensus 462 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 541 (786)
.....++..+...|+++.|..++++++..-- +..+.++ ..-......++.++..++++.+|..+|++|
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~----k~~G~~h--------l~va~~l~~~a~~y~~~~k~~eAv~ly~~A 267 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILE----KTSGLKH--------LVVASMLNILALVYRSLGKYDEAVNLYEEA 267 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHH----HccCccC--------HHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4445588888888999999999988887610 0000000 011233335889999999999999999999
Q ss_pred Hhh-----ccCCH---HHHHHHHHHHHHcccHHHHHHHHHHHHhhcCC---CChHHHHHHHHHHHHHHhCCCChHHHHHH
Q 003918 542 LDL-----RIATP---QIIINYALLLEEHKYFEDAFRVYERGVKIFKY---PHVKDIWVTYLSKFVKRYGKTKLERAREL 610 (786)
Q Consensus 542 l~~-----~p~~~---~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~---p~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 610 (786)
+.+ .+++| .++.+++.+|...|++++|...+++|++++.. +..+.+-..+.........++.+++|..+
T Consensus 268 L~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l 347 (508)
T KOG1840|consen 268 LTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKL 347 (508)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHH
Confidence 987 24444 57889999999999999999999999998533 33444433332222222234789999999
Q ss_pred HHHHHhhC---C--cc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----chh-hHHHHHHHHHHHhcChhH
Q 003918 611 FENAVETA---P--AD-AVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNH-----EKL-GMYEIYIARAAEIFGVPK 678 (786)
Q Consensus 611 ~~~al~~~---p--~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~-~~~~~~~~~~~~~~~~~~ 678 (786)
++++++.. | ++ ....++.++|.++...|++++|.++|++++++.... ..+ .....+...+.+.+.+.+
T Consensus 348 ~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~ 427 (508)
T KOG1840|consen 348 LQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEE 427 (508)
T ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccch
Confidence 99999862 2 22 135688899999999999999999999999876321 111 122222333467788999
Q ss_pred HHHHHHHHHHh----c--CCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHc
Q 003918 679 TREIYEQAIES----G--LPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQ 725 (786)
Q Consensus 679 A~~~~~~al~~----~--~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 725 (786)
|..+|.++... | .|+ ....+.+++.+|..+|+++.|.++.++++.
T Consensus 428 a~~l~~~~~~i~~~~g~~~~~--~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 428 AEQLFEEAKDIMKLCGPDHPD--VTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHHHHhCCCCCc--hHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 99999988765 2 233 567889999999999999999999999884
No 90
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.52 E-value=4.6e-11 Score=127.03 Aligned_cols=209 Identities=13% Similarity=0.007 Sum_probs=108.2
Q ss_pred CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhh
Q 003918 421 KPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVA 500 (786)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 500 (786)
+.+..|..+|.++...|+.+.+...+.++....|.+... .......+......|++++|.+.+++++...|
T Consensus 4 ~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P-------- 74 (355)
T cd05804 4 DFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATE-RERAHVEALSAWIAGDLPKALALLEQLLDDYP-------- 74 (355)
T ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--------
Confidence 455556666666666666666666666655555544311 13333444455556666666666666665555
Q ss_pred ccCChhHHHHhhhcHHHHHH---HHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 003918 501 ADGNEPVQMKLHKSLRLWTF---YVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVK 577 (786)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 577 (786)
++...+.. +.......+....+...+.......|.....+..++.++...|++++|...++++++
T Consensus 75 ------------~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~ 142 (355)
T cd05804 75 ------------RDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALE 142 (355)
T ss_pred ------------CcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33333331 111111123333344443332233444444555556666666666666666666666
Q ss_pred hcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 003918 578 IFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAV--KPLYLQYAKLEEDYGLAKRAMKVYDQATKAVP 655 (786)
Q Consensus 578 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p 655 (786)
. .|++..++..++..++ ..|++++|+..+++++...|.+.. ...|..++.++...|++++|..+|++++...|
T Consensus 143 ~--~p~~~~~~~~la~i~~---~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 143 L--NPDDAWAVHAVAHVLE---MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred h--CCCCcHHHHHHHHHHH---HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 5 4555555544433333 235666666666666665543111 22445566666666666666666666654443
No 91
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.49 E-value=1.3e-10 Score=123.67 Aligned_cols=316 Identities=11% Similarity=-0.008 Sum_probs=208.1
Q ss_pred CCCCHHHHHHHHHhhc--CCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChh
Q 003918 381 NPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVD 458 (786)
Q Consensus 381 ~p~~~~~~~~~~~~~~--~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~ 458 (786)
+|+.+..+..++.++. ++++.+...+.++.+...+ + ..........+......|++++|...+++++..+|++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~- 77 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAA-R--ATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL- 77 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcc-C--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH-
Confidence 6888888888887775 7888888888887754332 1 13455666778888899999999999999999999986
Q ss_pred hHHHHHHH---HHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHH
Q 003918 459 HLASIWCE---WAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTR 535 (786)
Q Consensus 459 ~~~~~~~~---~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 535 (786)
..+.. +.......+....+.+.+.......| ........++.++...|++++|.
T Consensus 78 ---~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------------------~~~~~~~~~a~~~~~~G~~~~A~ 134 (355)
T cd05804 78 ---LALKLHLGAFGLGDFSGMRDHVARVLPLWAPENP--------------------DYWYLLGMLAFGLEEAGQYDRAE 134 (355)
T ss_pred ---HHHHHhHHHHHhcccccCchhHHHHHhccCcCCC--------------------CcHHHHHHHHHHHHHcCCHHHHH
Confidence 44442 22222234555666666655334445 44556666778889999999999
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChH--HHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 003918 536 AVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVK--DIWVTYLSKFVKRYGKTKLERARELFEN 613 (786)
Q Consensus 536 ~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 613 (786)
..++++++..|+++.++..++.++...|++++|+..+++++...+.+... ..|..++..+. ..|++++|...|++
T Consensus 135 ~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~---~~G~~~~A~~~~~~ 211 (355)
T cd05804 135 EAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL---ERGDYEAALAIYDT 211 (355)
T ss_pred HHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH---HCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999974211221 23333333332 45899999999999
Q ss_pred HHhhCCccCcHHHHHHH---HHHHHHcCCHHHHHHH---HHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHH
Q 003918 614 AVETAPADAVKPLYLQY---AKLEEDYGLAKRAMKV---YDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAI 687 (786)
Q Consensus 614 al~~~p~~~~~~~~~~~---a~~~~~~g~~~~A~~~---~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 687 (786)
++...|........... .......|....+... ........|...........+......|+.+.|...++...
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~ 291 (355)
T cd05804 212 HIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALK 291 (355)
T ss_pred HhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 98766621112111111 2222234533333222 22221111221111111223333456788999999998886
Q ss_pred HhcCC---Ch---hHHHHHHHHHHHHHHcCChHHHHHHHHHHHcc
Q 003918 688 ESGLP---DK---DVKAMCLKYAELEKSLGEIDRARGIYVFASQF 726 (786)
Q Consensus 688 ~~~~p---~~---~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 726 (786)
..... .. .........+..+...|+++.|...+..++..
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 292 GRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 64111 11 12334455566788899999999999999875
No 92
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=2.3e-08 Score=103.45 Aligned_cols=477 Identities=13% Similarity=0.105 Sum_probs=271.6
Q ss_pred CchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHhcCCChHHHH
Q 003918 80 THPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSL 159 (786)
Q Consensus 80 ~~~~~~~A~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~w~~~~~~~~~~~~~~~~A~ 159 (786)
..++|++|.+...+.+...|+.+++...-.-..+..++|+.|..+.+.-....-. ....+..+-++.+.+.. ++|+
T Consensus 24 ~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~---~~~~fEKAYc~Yrlnk~-Deal 99 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVI---NSFFFEKAYCEYRLNKL-DEAL 99 (652)
T ss_pred cchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhc---chhhHHHHHHHHHcccH-HHHH
Confidence 4589999999999999999999999887777788889999998665543221111 12223334445578888 9999
Q ss_pred HHHHHHHccCCCCH-HHHHHHHHhcCCHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHhcccccccCCcHHHHHH
Q 003918 160 RVYRRYLKYDPSHI-EDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIR 238 (786)
Q Consensus 160 ~~~~~~l~~~p~~~-~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (786)
..++ .+..++... +...+.+.+.|+|++|..+|+.+++... .......-..+....... .+. +.
T Consensus 100 k~~~-~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~-----dd~d~~~r~nl~a~~a~l-------~~~--~~ 164 (652)
T KOG2376|consen 100 KTLK-GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS-----DDQDEERRANLLAVAAAL-------QVQ--LL 164 (652)
T ss_pred HHHh-cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-----chHHHHHHHHHHHHHHhh-------hHH--HH
Confidence 9999 333333222 4455888899999999999999985421 101111111111110000 010 22
Q ss_pred hhhhccCchhHHHHHHHHHHHHhhccHHHHHHHHHHHhhccCchhcHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccc
Q 003918 239 GGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDE 318 (786)
Q Consensus 239 ~~~~~~p~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (786)
..+...|.+.-+..+..|-.+...|+|.+|++.+++++...... +..
T Consensus 165 q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~------------------------l~~--------- 211 (652)
T KOG2376|consen 165 QSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREK------------------------LED--------- 211 (652)
T ss_pred HhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHh------------------------hcc---------
Confidence 23334455445677777888888999999999988886431100 000
Q ss_pred ccCCcchhhhHhhhhhhHHHHHHhHhcccccCccchHHHHHHHHHhhhhhchhhhhhhhhhcCCCCHHHHHHHHHhhcCC
Q 003918 319 EHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGN 398 (786)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~ 398 (786)
++
T Consensus 212 ------------------------------------------------------------------------------~d 213 (652)
T KOG2376|consen 212 ------------------------------------------------------------------------------ED 213 (652)
T ss_pred ------------------------------------------------------------------------------cc
Confidence 00
Q ss_pred chhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHH
Q 003918 399 PTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFK 478 (786)
Q Consensus 399 ~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~ 478 (786)
. ..+-++. .++ .+...++-.+...|+..+|.++|..+++.+|.+......+-+.+..+-....-++
T Consensus 214 ~--~eEeie~---el~---------~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d 279 (652)
T KOG2376|consen 214 T--NEEEIEE---ELN---------PIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFD 279 (652)
T ss_pred c--chhhHHH---HHH---------HHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCc
Confidence 0 0011111 122 2446667677888999999999999999888775333233233322211111111
Q ss_pred -HHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHH
Q 003918 479 -GALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYAL 557 (786)
Q Consensus 479 -~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 557 (786)
.++..++......+ ..|.. +.... .-..++.+.+.
T Consensus 280 ~~~l~~k~~~~~~l~-----------------------~~~l~-------------------~Ls~~--qk~~i~~N~~l 315 (652)
T KOG2376|consen 280 GDLLKSKKSQVFKLA-----------------------EFLLS-------------------KLSKK--QKQAIYRNNAL 315 (652)
T ss_pred hHHHHHHHHHHHHhH-----------------------HHHHH-------------------HHHHH--HHHHHHHHHHH
Confidence 11111111111111 11110 00000 01123334444
Q ss_pred HHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHc
Q 003918 558 LLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDY 637 (786)
Q Consensus 558 ~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~ 637 (786)
+.+..+.-+++.+...+.-.. .|....--. +...... ....+.++.+++..+.+..|.+ +..+.+..+.+....
T Consensus 316 L~l~tnk~~q~r~~~a~lp~~--~p~~~~~~l--l~~~t~~-~~~~~~ka~e~L~~~~~~~p~~-s~~v~L~~aQl~is~ 389 (652)
T KOG2376|consen 316 LALFTNKMDQVRELSASLPGM--SPESLFPIL--LQEATKV-REKKHKKAIELLLQFADGHPEK-SKVVLLLRAQLKISQ 389 (652)
T ss_pred HHHHhhhHHHHHHHHHhCCcc--CchHHHHHH--HHHHHHH-HHHHHhhhHHHHHHHhccCCch-hHHHHHHHHHHHHhc
Confidence 444444444444433332222 232211111 1111111 1124777888888888888875 466778888888889
Q ss_pred CCHHHHHHHHH--------HHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHHh---cCCC-hhHHHHHHHHHH
Q 003918 638 GLAKRAMKVYD--------QATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIES---GLPD-KDVKAMCLKYAE 705 (786)
Q Consensus 638 g~~~~A~~~~~--------~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~~p~-~~~~~~~~~~~~ 705 (786)
|+.+.|.+++. ...+... .|. +....+..+.+.++.+.|..++..++.. ..+. ......|...+.
T Consensus 390 gn~~~A~~il~~~~~~~~ss~~~~~~-~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~ 466 (652)
T KOG2376|consen 390 GNPEVALEILSLFLESWKSSILEAKH-LPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAE 466 (652)
T ss_pred CCHHHHHHHHHHHhhhhhhhhhhhcc-Chh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhH
Confidence 99999999988 3333221 111 2233334445677777788888888764 1121 112346666788
Q ss_pred HHHHcCChHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003918 706 LEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREML 756 (786)
Q Consensus 706 ~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~G~~~~a~~~~ 756 (786)
+..+.|+.++|...++..++. +|. +.++.-.++..+... |.+.|+.+-
T Consensus 467 f~lr~G~~~ea~s~leel~k~-n~~-d~~~l~~lV~a~~~~-d~eka~~l~ 514 (652)
T KOG2376|consen 467 FKLRHGNEEEASSLLEELVKF-NPN-DTDLLVQLVTAYARL-DPEKAESLS 514 (652)
T ss_pred HHHhcCchHHHHHHHHHHHHh-CCc-hHHHHHHHHHHHHhc-CHHHHHHHh
Confidence 888889999999999999986 566 577777777777666 677776665
No 93
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.40 E-value=8.3e-11 Score=124.63 Aligned_cols=258 Identities=16% Similarity=0.211 Sum_probs=185.0
Q ss_pred hcCCCCHHHHHHHHHhhc--CCchhHHHHHHHHHhccCCCcc--CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccC
Q 003918 379 RQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKA--VGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNY 454 (786)
Q Consensus 379 ~~~p~~~~~~~~~~~~~~--~~~~~a~~~~~~al~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 454 (786)
...|.-..+...++..+. |+++.|+..++.+++.+-.... .+.-......+|.+|...+++++|+.+|++++.+.-
T Consensus 193 ~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e 272 (508)
T KOG1840|consen 193 DEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE 272 (508)
T ss_pred cCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 345665556666666664 9999999999999975211000 012223334589999999999999999999998532
Q ss_pred ----CChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCC
Q 003918 455 ----KTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGN 530 (786)
Q Consensus 455 ----~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 530 (786)
.+.+....++..++.++...|++++|..++++++.+...... .....-.......+.++...++
T Consensus 273 ~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~------------~~~~~v~~~l~~~~~~~~~~~~ 340 (508)
T KOG1840|consen 273 EVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLG------------ASHPEVAAQLSELAAILQSMNE 340 (508)
T ss_pred HhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhc------------cChHHHHHHHHHHHHHHHHhcc
Confidence 233445678888999999999999999999999876441000 0000223455666777888999
Q ss_pred hHHHHHHHHHHHhhc-----c---CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcC------CCC-hHHHHHHHHHHH
Q 003918 531 LESTRAVYERILDLR-----I---ATPQIIINYALLLEEHKYFEDAFRVYERGVKIFK------YPH-VKDIWVTYLSKF 595 (786)
Q Consensus 531 ~~~A~~~~~~al~~~-----p---~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~------~p~-~~~~~~~~~~~~ 595 (786)
+++|..+|++++++. + .-+....++|.+|...|++++|.++|++|+.+.+ .+. ...+|. ++..+
T Consensus 341 ~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~-la~~~ 419 (508)
T KOG1840|consen 341 YEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQ-LAEAY 419 (508)
T ss_pred hhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHH-HHHHH
Confidence 999999999999872 2 3356789999999999999999999999998841 122 223444 23333
Q ss_pred HHHhCCCChHHHHHHHHHHHhh----CCccC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003918 596 VKRYGKTKLERARELFENAVET----APADA-VKPLYLQYAKLEEDYGLAKRAMKVYDQATK 652 (786)
Q Consensus 596 ~~~~~~~~~~~A~~~~~~al~~----~p~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 652 (786)
. ..+++.+|..+|.+++.. .|+.+ ....+.+++..|...|+++.|.++.+.++.
T Consensus 420 ~---~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 420 E---ELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred H---HhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 2 346788888888888775 33321 456888999999999999999999988873
No 94
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=2.3e-10 Score=105.63 Aligned_cols=201 Identities=14% Similarity=0.066 Sum_probs=161.1
Q ss_pred CchhHHHHHHHHHhccCCCccCCCcHHHHHHH---HHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhc
Q 003918 398 NPTKQILTYTEAVRTVDPMKAVGKPHTLWVAF---AKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRH 474 (786)
Q Consensus 398 ~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~---a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~ 474 (786)
+.++..+++...+..... .. --.+.|..+ .-.....|+.+-|..++++.....|.+. .+-...|.++...
T Consensus 27 nseevv~l~~~~~~~~k~-~~--~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~----RV~~lkam~lEa~ 99 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKS-GA--LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSK----RVGKLKAMLLEAT 99 (289)
T ss_pred CHHHHHHHHHHHHHHhhh-cc--cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCh----hHHHHHHHHHHHh
Confidence 456666666666532111 10 112344444 4444578999999999999999899997 7788889999999
Q ss_pred cCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHH
Q 003918 475 KNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIIN 554 (786)
Q Consensus 475 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 554 (786)
|++++|+++|++.++.+| .+..++..-.-+...+|+.-.|++-+..-++.+++|+++|..
T Consensus 100 ~~~~~A~e~y~~lL~ddp--------------------t~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~e 159 (289)
T KOG3060|consen 100 GNYKEAIEYYESLLEDDP--------------------TDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHE 159 (289)
T ss_pred hchhhHHHHHHHHhccCc--------------------chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHH
Confidence 999999999999999999 566666666667788999999999999999999999999999
Q ss_pred HHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHH
Q 003918 555 YALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQ 629 (786)
Q Consensus 555 ~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 629 (786)
++.+|...|+|++|.-+++.++-+ .|.++.....++..++..-+..++.-|+++|+++++.+|. +...++.
T Consensus 160 LaeiY~~~~~f~kA~fClEE~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~--~~ral~G 230 (289)
T KOG3060|consen 160 LAEIYLSEGDFEKAAFCLEELLLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPK--NLRALFG 230 (289)
T ss_pred HHHHHHhHhHHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChH--hHHHHHH
Confidence 999999999999999999999997 7999888888887776554455788999999999999996 3444443
No 95
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=3.3e-08 Score=95.52 Aligned_cols=446 Identities=12% Similarity=0.053 Sum_probs=243.0
Q ss_pred HHcCChhhHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003918 37 KREAPFKKRFVIYERALKAL---PGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLT 113 (786)
Q Consensus 37 ~~~~~~~~~~~~~~~al~~~---P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~w~~~~~~~~ 113 (786)
..++++..|+..++-.+..+ -+++.+|+.++.+.+ |+|++|...|+-+...+.-+..+|+.++...+
T Consensus 33 ls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhL----------gdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~F 102 (557)
T KOG3785|consen 33 LSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHL----------GDYEEALNVYTFLMNKDDAPAELGVNLACCKF 102 (557)
T ss_pred HhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhh----------ccHHHHHHHHHHHhccCCCCcccchhHHHHHH
Confidence 34778888888877666443 237789999999876 89999999999888877677789999998888
Q ss_pred cCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHhcCCChHHHHHHHHHHHccCCCCHHHHHHHHHhcCCHHHHHHHH
Q 003918 114 SQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERL 193 (786)
Q Consensus 114 ~~~~~~~A~~~~~~al~~~p~~~~~~~w~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~g~~~~A~~~~ 193 (786)
-.|.+.+|..+-++|-. .|.. -..+.....+.++- +-.-.|...++-...+.-.+..+-...-+|.+|+++|
T Consensus 103 yLg~Y~eA~~~~~ka~k-~pL~-----~RLlfhlahklndE--k~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvY 174 (557)
T KOG3785|consen 103 YLGQYIEAKSIAEKAPK-TPLC-----IRLLFHLAHKLNDE--KRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVY 174 (557)
T ss_pred HHHHHHHHHHHHhhCCC-ChHH-----HHHHHHHHHHhCcH--HHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 88999999888776532 2321 12233333444543 3344455555422222233444444456788888888
Q ss_pred HHHhcCCCccccCCCcchHHHHHHHHHHhcccccccCCcHHHHHHhhhhccCchhHHHHHHHHHHHHhhccHHHHHHHHH
Q 003918 194 ASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFE 273 (786)
Q Consensus 194 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~y~~~g~~~~A~~~~~ 273 (786)
.+++-+. ++ ...+-..+|-.|.+..-|+-+..++.
T Consensus 175 krvL~dn------------------------~e---------------------y~alNVy~ALCyyKlDYydvsqevl~ 209 (557)
T KOG3785|consen 175 KRVLQDN------------------------PE---------------------YIALNVYMALCYYKLDYYDVSQEVLK 209 (557)
T ss_pred HHHHhcC------------------------hh---------------------hhhhHHHHHHHHHhcchhhhHHHHHH
Confidence 8887321 11 01223445667777777887887877
Q ss_pred HHhhccCchhcHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhHhcccccCccc
Q 003918 274 EGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVK 353 (786)
Q Consensus 274 ~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (786)
--+...|++.- +.=..+...+.. +.+. ++++ |++
T Consensus 210 vYL~q~pdSti-A~NLkacn~fRl---------~ngr---------~ae~----------------E~k----------- 243 (557)
T KOG3785|consen 210 VYLRQFPDSTI-AKNLKACNLFRL---------INGR---------TAED----------------EKK----------- 243 (557)
T ss_pred HHHHhCCCcHH-HHHHHHHHHhhh---------hccc---------hhHH----------------HHH-----------
Confidence 77877776531 111111111110 0000 0000 000
Q ss_pred hHHHHHHHHHhhhhhchhhhhhhhhhcCCCCHHHHHHHH---Hh-hcCCchhHHHHHHHHHhccCCCccCCCcHHHHHHH
Q 003918 354 DVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRV---KI-FEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAF 429 (786)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~---~~-~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~ 429 (786)
. +..|-+..-...... .+ ...+-+.|..++-..++. -|.+...+
T Consensus 244 -------~----------------ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~---------IPEARlNL 291 (557)
T KOG3785|consen 244 -------E----------------LADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH---------IPEARLNL 291 (557)
T ss_pred -------H----------------HHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh---------ChHhhhhh
Confidence 0 111111000000000 01 114557788887776643 24577899
Q ss_pred HHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCH-------HHHHHHHHHHhcCCchHHhhhhhcc
Q 003918 430 AKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNF-------KGALELMRRATAEPSVEVRRRVAAD 502 (786)
Q Consensus 430 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~-------~~A~~~~~~al~~~~~~~~~~~~~~ 502 (786)
+.+|.++++..+|....+. .+|.+| .-++..+......|+- +-|.+.|+- +.....+
T Consensus 292 ~iYyL~q~dVqeA~~L~Kd---l~PttP----~EyilKgvv~aalGQe~gSreHlKiAqqffql-VG~Sa~e-------- 355 (557)
T KOG3785|consen 292 IIYYLNQNDVQEAISLCKD---LDPTTP----YEYILKGVVFAALGQETGSREHLKIAQQFFQL-VGESALE-------- 355 (557)
T ss_pred eeeecccccHHHHHHHHhh---cCCCCh----HHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHH-hcccccc--------
Confidence 9999999999999998765 478877 4455555555555543 333333322 1111100
Q ss_pred CChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCC
Q 003918 503 GNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYP 582 (786)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p 582 (786)
+ +........+...--..+++..+-.+...-...-++....++++..+...|++.+|.++|-++-.- .-
T Consensus 356 -c--------DTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~--~i 424 (557)
T KOG3785|consen 356 -C--------DTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGP--EI 424 (557)
T ss_pred -c--------ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcCh--hh
Confidence 0 011111122222222335666666666666666677777788888888888888888877766441 11
Q ss_pred ChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 003918 583 HVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVP 655 (786)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p 655 (786)
.+..++..++...+.+ .+++.-|=.+|-+ .+.+.....+...+|.--++.+.+=-|-+.|...-..+|
T Consensus 425 kn~~~Y~s~LArCyi~--nkkP~lAW~~~lk---~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 425 KNKILYKSMLARCYIR--NKKPQLAWDMMLK---TNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred hhhHHHHHHHHHHHHh--cCCchHHHHHHHh---cCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 2334444444444332 3455555444432 222211233334444444455555445555554444444
No 96
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.38 E-value=7.3e-09 Score=102.42 Aligned_cols=286 Identities=11% Similarity=0.049 Sum_probs=217.2
Q ss_pred HHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhh
Q 003918 434 ETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHK 513 (786)
Q Consensus 434 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (786)
.-.|+|.+|.+...+.-+..+... ..++.-++.-.+.|+.+.+-.++.++-+..++ +
T Consensus 95 l~eG~~~qAEkl~~rnae~~e~p~----l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~-------------------~ 151 (400)
T COG3071 95 LFEGDFQQAEKLLRRNAEHGEQPV----LAYLLAAEAAQQRGDEDRANRYLAEAAELAGD-------------------D 151 (400)
T ss_pred HhcCcHHHHHHHHHHhhhcCcchH----HHHHHHHHHHHhcccHHHHHHHHHHHhccCCC-------------------c
Confidence 346899999999988766544443 66666777778899999999999999988662 2
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhc--CCCChH----HH
Q 003918 514 SLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIF--KYPHVK----DI 587 (786)
Q Consensus 514 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--~~p~~~----~~ 587 (786)
........+.+....|+++.|+.-..++++..|.++.+..-...+|.+.|++.....+..+.-+.. .+++-. .+
T Consensus 152 ~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a 231 (400)
T COG3071 152 TLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQA 231 (400)
T ss_pred hHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHH
Confidence 334555667778889999999999999999999999999999999999999999999998887752 122211 12
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHH
Q 003918 588 WVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYI 667 (786)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 667 (786)
|... +......+..+.-....+..-..... ++.+-..++.-+.+.|..++|.++.+.+++..-+. . ...++
T Consensus 232 ~~gl---L~q~~~~~~~~gL~~~W~~~pr~lr~--~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~-~---L~~~~ 302 (400)
T COG3071 232 WEGL---LQQARDDNGSEGLKTWWKNQPRKLRN--DPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP-R---LCRLI 302 (400)
T ss_pred HHHH---HHHHhccccchHHHHHHHhccHHhhc--ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh-h---HHHHH
Confidence 3322 22221222233333333333222222 46788899999999999999999999999876543 2 22222
Q ss_pred HHHHHhcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHcC
Q 003918 668 ARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHG 747 (786)
Q Consensus 668 ~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~G 747 (786)
. ..+-++...=+...++.++. .|+ ++..+..+|..+.+.+.+.+|.++|+.|++. .|+ ...|..++..+.+.|
T Consensus 303 ~-~l~~~d~~~l~k~~e~~l~~-h~~--~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~-~~s--~~~~~~la~~~~~~g 375 (400)
T COG3071 303 P-RLRPGDPEPLIKAAEKWLKQ-HPE--DPLLLSTLGRLALKNKLWGKASEALEAALKL-RPS--ASDYAELADALDQLG 375 (400)
T ss_pred h-hcCCCCchHHHHHHHHHHHh-CCC--ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCC--hhhHHHHHHHHHHcC
Confidence 2 24568888888889999998 888 4679999999999999999999999999996 565 778999999999999
Q ss_pred CHHHHHHHHHH
Q 003918 748 NEDTFREMLRI 758 (786)
Q Consensus 748 ~~~~a~~~~~~ 758 (786)
+..+|.++.+.
T Consensus 376 ~~~~A~~~r~e 386 (400)
T COG3071 376 EPEEAEQVRRE 386 (400)
T ss_pred ChHHHHHHHHH
Confidence 99999998853
No 97
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.38 E-value=2e-09 Score=115.85 Aligned_cols=338 Identities=15% Similarity=0.129 Sum_probs=216.3
Q ss_pred HHHHHHhh--cCCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHH
Q 003918 388 WHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWC 465 (786)
Q Consensus 388 ~~~~~~~~--~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 465 (786)
.+..+.++ .|++++|++.++..-+.+- +........|.++.+.|++++|..+|...+..+|++. ..+.
T Consensus 7 lLY~~~il~e~g~~~~AL~~L~~~~~~I~------Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~----~Yy~ 76 (517)
T PF12569_consen 7 LLYKNSILEEAGDYEEALEHLEKNEKQIL------DKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNY----DYYR 76 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhhhhCC------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH----HHHH
Confidence 33344444 3899999999988664432 4677888999999999999999999999999999997 6666
Q ss_pred HHHHHHH-----hccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcC-Ch-HHHHHHH
Q 003918 466 EWAEMEL-----RHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLG-NL-ESTRAVY 538 (786)
Q Consensus 466 ~~a~~~~-----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~-~~A~~~~ 538 (786)
.+..... ...+.+....+|+......|.. ...-..-..+ ..| .+ ..+....
T Consensus 77 ~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s--------------------~~~~rl~L~~--~~g~~F~~~~~~yl 134 (517)
T PF12569_consen 77 GLEEALGLQLQLSDEDVEKLLELYDELAEKYPRS--------------------DAPRRLPLDF--LEGDEFKERLDEYL 134 (517)
T ss_pred HHHHHHhhhcccccccHHHHHHHHHHHHHhCccc--------------------cchhHhhccc--CCHHHHHHHHHHHH
Confidence 6665542 1235677778888877766611 0000000000 001 11 1222333
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhc-------------CCCChHHHHHHHHHHHHHHhCCCChH
Q 003918 539 ERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIF-------------KYPHVKDIWVTYLSKFVKRYGKTKLE 605 (786)
Q Consensus 539 ~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------------~~p~~~~~~~~~~~~~~~~~~~~~~~ 605 (786)
...+.. .-|.+...+-.+|....+..-..+++...+... ..|....+|..|.-..+. ...|+++
T Consensus 135 ~~~l~K--gvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhy-d~~g~~~ 211 (517)
T PF12569_consen 135 RPQLRK--GVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHY-DYLGDYE 211 (517)
T ss_pred HHHHhc--CCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHH-HHhCCHH
Confidence 333332 344455555555543333333333333322210 123444567655322221 1458899
Q ss_pred HHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHH
Q 003918 606 RARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQ 685 (786)
Q Consensus 606 ~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 685 (786)
+|.++.++||+..|. .+.+++.-|.++...|++.+|...++.+-..++.+ -.+....+....+.|++++|..++..
T Consensus 212 ~Al~~Id~aI~htPt--~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~D--RyiNsK~aKy~LRa~~~e~A~~~~~~ 287 (517)
T PF12569_consen 212 KALEYIDKAIEHTPT--LVELYMTKARILKHAGDLKEAAEAMDEARELDLAD--RYINSKCAKYLLRAGRIEEAEKTASL 287 (517)
T ss_pred HHHHHHHHHHhcCCC--cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhh--HHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 999999999999998 78999999999999999999999999999988763 33444455555789999999999888
Q ss_pred HHHhc-CCChh---HHHHHHH--HHHHHHHcCChHHHHHHHHHHHccCCCCCCHHHHHH---HHHHHHHcCCHHHHHHHH
Q 003918 686 AIESG-LPDKD---VKAMCLK--YAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNR---WHEFEVNHGNEDTFREML 756 (786)
Q Consensus 686 al~~~-~p~~~---~~~~~~~--~~~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~---~~~~~~~~G~~~~a~~~~ 756 (786)
-...+ .|... .--+|+. .|..+.+.|++..|+.-|....++ ...+... +-.+.++.|.+....+++
T Consensus 288 Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~-----f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L 362 (517)
T PF12569_consen 288 FTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH-----FDDFEEDQFDFHSYCLRKMTLRAYVDML 362 (517)
T ss_pred hcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-----HHHHhcccccHHHHHHhhccHHHHHHHH
Confidence 77652 12111 1124544 488899999999999999998886 1223333 344566678888888887
Q ss_pred HHHHHHHhhhhhhHHH
Q 003918 757 RIKRSVSASYSQVIYF 772 (786)
Q Consensus 757 ~~~~~~~~~~~~~~~~ 772 (786)
+-.+..++...|+
T Consensus 363 ---~~ed~l~~~~~y~ 375 (517)
T PF12569_consen 363 ---RWEDKLRSHPFYR 375 (517)
T ss_pred ---HHHHHhhcCHHHH
Confidence 4444445444444
No 98
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=5.1e-08 Score=100.87 Aligned_cols=153 Identities=17% Similarity=0.127 Sum_probs=100.9
Q ss_pred ChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHH
Q 003918 438 DIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRL 517 (786)
Q Consensus 438 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (786)
.+..|..++..+...+|... ..+.+..+.+...+|+++.|+.++......-. .. ...+...+.+
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s---~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~------ss-------~~~~~~~P~~ 419 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKS---KVVLLLRAQLKISQGNPEVALEILSLFLESWK------SS-------ILEAKHLPGT 419 (652)
T ss_pred HHhhhHHHHHHHhccCCchh---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhh------hh-------hhhhccChhH
Confidence 67888899888888888762 26778888999999999999999984441100 00 0000023344
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhc-------cCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHH
Q 003918 518 WTFYVDLEESLGNLESTRAVYERILDLR-------IATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVT 590 (786)
Q Consensus 518 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~ 590 (786)
-.....++...++.+.|..++..++... +..-..|-..+.+..+.|+-++|...+++.++. +|.+.++...
T Consensus 420 V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~--n~~d~~~l~~ 497 (652)
T KOG2376|consen 420 VGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF--NPNDTDLLVQ 497 (652)
T ss_pred HHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh--CCchHHHHHH
Confidence 4444455667777777888888887642 112235556678888888888999999988886 5888777776
Q ss_pred HHHHHHHHhCCCChHHHHHHHH
Q 003918 591 YLSKFVKRYGKTKLERARELFE 612 (786)
Q Consensus 591 ~~~~~~~~~~~~~~~~A~~~~~ 612 (786)
.+..+.. =++++|..+-.
T Consensus 498 lV~a~~~----~d~eka~~l~k 515 (652)
T KOG2376|consen 498 LVTAYAR----LDPEKAESLSK 515 (652)
T ss_pred HHHHHHh----cCHHHHHHHhh
Confidence 5544431 25666665543
No 99
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.32 E-value=6.9e-11 Score=106.10 Aligned_cols=119 Identities=12% Similarity=0.022 Sum_probs=81.7
Q ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHH
Q 003918 443 RVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYV 522 (786)
Q Consensus 443 ~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (786)
...|+++++.+|++ +...+....+.|++++|...|++++...| .+..+|..+|
T Consensus 13 ~~~~~~al~~~p~~-------~~~~g~~~~~~g~~~~A~~~~~~al~~~P--------------------~~~~a~~~lg 65 (144)
T PRK15359 13 EDILKQLLSVDPET-------VYASGYASWQEGDYSRAVIDFSWLVMAQP--------------------WSWRAHIALA 65 (144)
T ss_pred HHHHHHHHHcCHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHcCC--------------------CcHHHHHHHH
Confidence 35666667666632 34456666667777777777777777777 5667777777
Q ss_pred HHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHH
Q 003918 523 DLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVT 590 (786)
Q Consensus 523 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~ 590 (786)
.++...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|+++++. .|+++..|..
T Consensus 66 ~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--~p~~~~~~~~ 131 (144)
T PRK15359 66 GTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--SYADASWSEI 131 (144)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHH
Confidence 77777777777777777777777777777777777777777777777777777775 5666666654
No 100
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=3.9e-08 Score=105.62 Aligned_cols=419 Identities=19% Similarity=0.226 Sum_probs=264.1
Q ss_pred HhHHHHhhCCCChHhHHHHHHHHH-cCChhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHH
Q 003918 15 LYEEELLRNPFSLKLWWRYLVAKR-EAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFER 93 (786)
Q Consensus 15 ~~~~~l~~~p~~~~~w~~~~~~~~-~~~~~~~~~~~~~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 93 (786)
-++..+..|+.++.+.+.++.... .++..+.+..=..+-..+|.++.+|..|+.-+..+.. .++...+...|++
T Consensus 101 t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~-----s~~~~~v~~~~ek 175 (881)
T KOG0128|consen 101 TLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQ-----SEERKEVEELFEK 175 (881)
T ss_pred HHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-----CcchhHHHHHHHH
Confidence 356677778888888888877654 6788888777788888999999999999999887632 2778889999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHcC-------CcHHHHHHHHHHHHhhCCCCc--chhhHHHHHHHHHhc---CCChHHHHHH
Q 003918 94 ALVTMHKMPRIWIMYLETLTSQ-------KFITKARRTFDRALCALPVTQ--HDRIWEIYLRFVEQE---GIPIETSLRV 161 (786)
Q Consensus 94 al~~~p~~~~~w~~~~~~~~~~-------~~~~~A~~~~~~al~~~p~~~--~~~~w~~~~~~~~~~---~~~~~~A~~~ 161 (786)
||. +-+++.+|..++.+.... ++++.-+.+|+++|....... ...+|.+|..++... -.. ++...+
T Consensus 176 al~-dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~-~qv~a~ 253 (881)
T KOG0128|consen 176 ALG-DYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQ-RQVIAL 253 (881)
T ss_pred Hhc-ccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHH-HHHHHH
Confidence 998 789999999999998853 457889999999998776432 468999999877532 112 567788
Q ss_pred HHHHHccCCCCHHHHH-HHHH---------hcCCHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHhcccccccCC
Q 003918 162 YRRYLKYDPSHIEDFI-EFLV---------KSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGL 231 (786)
Q Consensus 162 ~~~~l~~~p~~~~~~~-~~~~---------~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (786)
+.+.+. .|.+..... .+.- ....++.|.+.+...+
T Consensus 254 ~~~el~-~~~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~---------------------------------- 298 (881)
T KOG0128|consen 254 FVRELK-QPLDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKIL---------------------------------- 298 (881)
T ss_pred HHHHHh-ccchhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHH----------------------------------
Confidence 888887 454432221 1110 1122222222211111
Q ss_pred cHHHHHHhhhhccCchhHHHHHHHHHHHHhhccHHHHHHHHHHHhhccCchhcHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 003918 232 NVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSV 311 (786)
Q Consensus 232 ~~~~~~~~~~~~~p~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (786)
..++..++..|.. -+.|..+.++....|....-..++++++...+.. ..+|..|..+...-+ .+.+
T Consensus 299 ---~~~e~~~q~~~~~-~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~---~~~wi~y~~~~d~eL--kv~~----- 364 (881)
T KOG0128|consen 299 ---FKFERLVQKEPIK-DQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLD---RALWIGYGVYLDTEL--KVPQ----- 364 (881)
T ss_pred ---HHHHHHhhhhHHH-HHHHHHHHHHHHhcCCchHHHHHHHHHHHhcccc---HHHHhhhhhhccccc--cccc-----
Confidence 0112223333332 4568888888888888888888888888765544 346766655432100 0000
Q ss_pred cccccccccCCcchhhhHhhhhhhHHHHHHhHhcccccCccchHHHHHHHHHhhhhhchhhhhhhhhhcCCCCHHHHHHH
Q 003918 312 EEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRR 391 (786)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~ 391 (786)
+..-.....++..|.....|-..
T Consensus 365 ---------------------------------------------------------~~~~~~~ra~R~cp~tgdL~~ra 387 (881)
T KOG0128|consen 365 ---------------------------------------------------------RGVSVHPRAVRSCPWTGDLWKRA 387 (881)
T ss_pred ---------------------------------------------------------ccccccchhhcCCchHHHHHHHH
Confidence 00111112255667777777655
Q ss_pred HHhhc-C--CchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCC------hhHHHHHHHHHHhcc----CCChh
Q 003918 392 VKIFE-G--NPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKD------IANARVIFDKAVQVN----YKTVD 458 (786)
Q Consensus 392 ~~~~~-~--~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~------~~~A~~~~~~al~~~----p~~~~ 458 (786)
...++ + ........+++++. ..+.++..+..+...+++ ++.-++.|..|.... ....+
T Consensus 388 llAleR~re~~~vI~~~l~~~ls---------~~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~D 458 (881)
T KOG0128|consen 388 LLALERNREEITVIVQNLEKDLS---------MTVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLD 458 (881)
T ss_pred HHHHHhcCcchhhHHHHHHHHHH---------HHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 44443 2 23344455666553 123344444444444433 333455555554311 11122
Q ss_pred hHHHHHHHHHHHHHh-ccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHH-HHHHHHHHHHHcCChHHHHH
Q 003918 459 HLASIWCEWAEMELR-HKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLR-LWTFYVDLEESLGNLESTRA 536 (786)
Q Consensus 459 ~~~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~A~~ 536 (786)
+...+...++.++.. .++.+.++.+.+..+.... .+.. .|..+++++...|+...++.
T Consensus 459 t~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~--------------------~~iag~Wle~~~lE~~~g~~~~~R~ 518 (881)
T KOG0128|consen 459 TRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGG--------------------GSIAGKWLEAINLEREYGDGPSARK 518 (881)
T ss_pred hHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCc--------------------chHHHHHHHHHhHHHHhCCchhHHH
Confidence 233666677777754 5789999999988887666 3334 89999999999999999999
Q ss_pred HHHHHHhh--ccCC-HHHHHHHHHHHHHcccHHHHHHHHHHH
Q 003918 537 VYERILDL--RIAT-PQIIINYALLLEEHKYFEDAFRVYERG 575 (786)
Q Consensus 537 ~~~~al~~--~p~~-~~~~~~~~~~~~~~g~~~~A~~~~~~a 575 (786)
++++++.. +|++ ..++..+-.+....|.++....+-.+.
T Consensus 519 ~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~~~~~ 560 (881)
T KOG0128|consen 519 VLRKAYSQVVDPEDALEVLEFFRRFEREYGTLESFDLCPEKV 560 (881)
T ss_pred HHHHHHhcCcCchhHHHHHHHHHHHHhccccHHHHhhhHHhh
Confidence 88888764 3332 246666777777788777666555443
No 101
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.31 E-value=2.3e-10 Score=113.64 Aligned_cols=192 Identities=10% Similarity=-0.038 Sum_probs=147.2
Q ss_pred CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhh
Q 003918 421 KPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVA 500 (786)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 500 (786)
..+..++..|..+...|+++.|+..|++++..+|+++. ....|..++.++...|++++|+..|+++++..|
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p-------- 101 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPY-AEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP-------- 101 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchh-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc--------
Confidence 56788999999999999999999999999999998752 225788899999999999999999999998887
Q ss_pred ccCChhHHHHhhhcHH---HHHHHHHHHHHc--------CChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHH
Q 003918 501 ADGNEPVQMKLHKSLR---LWTFYVDLEESL--------GNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAF 569 (786)
Q Consensus 501 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~ 569 (786)
+++. .+...+.++... |++++|+..|++++..+|+++..+..+..+....+.
T Consensus 102 ------------~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~----- 164 (235)
T TIGR03302 102 ------------NHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNR----- 164 (235)
T ss_pred ------------CCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHH-----
Confidence 3333 566667776654 789999999999999999987766444332221110
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccC-cHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003918 570 RVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADA-VKPLYLQYAKLEEDYGLAKRAMKVYD 648 (786)
Q Consensus 570 ~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~ 648 (786)
+. ......+..+. ..|++.+|+..|+++++..|+.+ ...++..++..+...|++++|..+++
T Consensus 165 ------~~--------~~~~~~a~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~ 227 (235)
T TIGR03302 165 ------LA--------GKELYVARFYL---KRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAA 227 (235)
T ss_pred ------HH--------HHHHHHHHHHH---HcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 00 01112222222 34889999999999999977543 57899999999999999999999988
Q ss_pred HHHhcCC
Q 003918 649 QATKAVP 655 (786)
Q Consensus 649 ~~l~~~p 655 (786)
.....+|
T Consensus 228 ~l~~~~~ 234 (235)
T TIGR03302 228 VLGANYP 234 (235)
T ss_pred HHHhhCC
Confidence 8877766
No 102
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.31 E-value=4.8e-10 Score=125.75 Aligned_cols=174 Identities=14% Similarity=0.149 Sum_probs=126.5
Q ss_pred CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhh
Q 003918 421 KPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVA 500 (786)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 500 (786)
.+..+|..++..+...+++++|+.+++.+++.+|+.. .+|+..|.++.+.++++.+.-+ +++...+....+..
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i----~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~- 101 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSI----SALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI- 101 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcce----ehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH-
Confidence 6777888888888788888888888888888888777 7777777777777777777666 66555441100000
Q ss_pred ccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcC
Q 003918 501 ADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFK 580 (786)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~ 580 (786)
.+.-.........+..+...+|.+|.++|+.++|..+|+++++.+|+++.+..++|..+... ++++|++++.+|+..+
T Consensus 102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~- 179 (906)
T PRK14720 102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF- 179 (906)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH-
Confidence 00000011112245568888999999999999999999999999999999999999999998 9999999999999851
Q ss_pred CCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCcc
Q 003918 581 YPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPAD 621 (786)
Q Consensus 581 ~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 621 (786)
+ ..+++..+.++.++.+..+|++
T Consensus 180 -----------i-------~~kq~~~~~e~W~k~~~~~~~d 202 (906)
T PRK14720 180 -----------I-------KKKQYVGIEEIWSKLVHYNSDD 202 (906)
T ss_pred -----------H-------hhhcchHHHHHHHHHHhcCccc
Confidence 2 1135666777777777777763
No 103
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.31 E-value=1.6e-10 Score=109.61 Aligned_cols=127 Identities=7% Similarity=0.069 Sum_probs=113.4
Q ss_pred cCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHH
Q 003918 528 LGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERA 607 (786)
Q Consensus 528 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A 607 (786)
.++.++++..++++++.+|+++..|..+|.++...|++++|+..|+++++. .|+++.++..++..++...+....++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 557788999999999999999999999999999999999999999999998 799999999987655433222226999
Q ss_pred HHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 003918 608 RELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHE 658 (786)
Q Consensus 608 ~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~ 658 (786)
+.+++++++.+|+ +..++..+|..+...|++++|+..|+++++..|.+.
T Consensus 130 ~~~l~~al~~dP~--~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 130 REMIDKALALDAN--EVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHHHhCCC--ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 9999999999999 678999999999999999999999999999999754
No 104
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.28 E-value=5.1e-10 Score=111.08 Aligned_cols=186 Identities=12% Similarity=0.043 Sum_probs=147.1
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhc---HHHHHHHHHHHHHcCChHHHHHHH
Q 003918 462 SIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKS---LRLWTFYVDLEESLGNLESTRAVY 538 (786)
Q Consensus 462 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~A~~~~ 538 (786)
..++..+..+...|+++.|+..|++++...| ++ ...+..++.++...|++++|+..|
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p--------------------~~~~~~~a~~~la~~~~~~~~~~~A~~~~ 93 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALESRYP--------------------FSPYAEQAQLDLAYAYYKSGDYAEAIAAA 93 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------------------CchhHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 7888899999999999999999999998887 33 357788899999999999999999
Q ss_pred HHHHhhccCCHH---HHHHHHHHHHHc--------ccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHH
Q 003918 539 ERILDLRIATPQ---IIINYALLLEEH--------KYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERA 607 (786)
Q Consensus 539 ~~al~~~p~~~~---~~~~~~~~~~~~--------g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A 607 (786)
+++++..|+++. +++..|.++... |++++|++.|++++.. +|.+...+..+..... .
T Consensus 94 ~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----------~ 161 (235)
T TIGR03302 94 DRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----------L 161 (235)
T ss_pred HHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----------H
Confidence 999999998876 688888888776 7899999999999997 6887666544321110 0
Q ss_pred HHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch-hhHHHHHHHHHHHhcChhHHHHHHHHH
Q 003918 608 RELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEK-LGMYEIYIARAAEIFGVPKTREIYEQA 686 (786)
Q Consensus 608 ~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~a 686 (786)
... .......+|.++...|++.+|+..|+++++.+|+.+. ...+...+..+.+.|++++|..+++..
T Consensus 162 ~~~------------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 162 RNR------------LAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred HHH------------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 000 0122357788899999999999999999999997643 344555555667899999999999888
Q ss_pred HHhcCC
Q 003918 687 IESGLP 692 (786)
Q Consensus 687 l~~~~p 692 (786)
... .|
T Consensus 230 ~~~-~~ 234 (235)
T TIGR03302 230 GAN-YP 234 (235)
T ss_pred Hhh-CC
Confidence 776 55
No 105
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=6.6e-10 Score=109.58 Aligned_cols=270 Identities=14% Similarity=0.124 Sum_probs=154.8
Q ss_pred CCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccC
Q 003918 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKN 476 (786)
Q Consensus 397 ~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~ 476 (786)
.++..|+..|..||+ +.| .++..|...+..++..|++++|..-.++.++++|..+ ......++++...++
T Consensus 63 k~Y~nal~~yt~Ai~-~~p-----d~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~----k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 63 KTYGNALKNYTFAID-MCP-----DNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFS----KGQLREGQCHLALSD 132 (486)
T ss_pred hhHHHHHHHHHHHHH-hCc-----cchhhhchhHHHHHHHHhHhhcccchhhheecCCCcc----ccccchhhhhhhhHH
Confidence 346667777777774 444 5677777777777777777777777777777777665 455555666666666
Q ss_pred HHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHh----hhcH---HHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCH
Q 003918 477 FKGALELMRRATAEPSVEVRRRVAADGNEPVQMKL----HKSL---RLWTFYVDLEESLGNLESTRAVYERILDLRIATP 549 (786)
Q Consensus 477 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 549 (786)
..+|.+.++. ..+. + ...+.+...++ ...+ ..-..-+.++...|+++.|.+.--..+++++.+.
T Consensus 133 ~i~A~~~~~~---~~~~---~---~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~ 203 (486)
T KOG0550|consen 133 LIEAEEKLKS---KQAY---K---AANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNA 203 (486)
T ss_pred HHHHHHHhhh---hhhh---H---HhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchh
Confidence 6666665551 1110 0 00000000100 0001 1112223455566777777777777777777777
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHH--HHHHHH-------HhCCCChHHHHHHHHHHHhhCCc
Q 003918 550 QIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTY--LSKFVK-------RYGKTKLERARELFENAVETAPA 620 (786)
Q Consensus 550 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~--~~~~~~-------~~~~~~~~~A~~~~~~al~~~p~ 620 (786)
.+..-.+.++...++.+.|+..|++++.. +|++...=..+ ...+.. .+..|++..|-+.|..+|.++|.
T Consensus 204 ~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~ 281 (486)
T KOG0550|consen 204 EALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS 281 (486)
T ss_pred HHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc
Confidence 77777777777777777777777777776 56654422211 111110 12456666777777777777666
Q ss_pred cC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHHh
Q 003918 621 DA--VKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIES 689 (786)
Q Consensus 621 ~~--~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 689 (786)
+. ...+|.+.+....+.|+..+|+..-..+++++|. .+..+.....++...++++.|++.|++|++.
T Consensus 282 n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s--yikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 282 NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS--YIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 32 2445666666666667777777777777666654 2222333333344456666777777777665
No 106
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.27 E-value=2.1e-10 Score=102.99 Aligned_cols=127 Identities=12% Similarity=-0.049 Sum_probs=115.6
Q ss_pred HHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHH
Q 003918 403 ILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALE 482 (786)
Q Consensus 403 ~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~ 482 (786)
...|++++ .++| ..+..+|..+...|++++|...|++++..+|.+. .+|..+|.++.+.|++++|+.
T Consensus 13 ~~~~~~al-~~~p--------~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~----~a~~~lg~~~~~~g~~~~A~~ 79 (144)
T PRK15359 13 EDILKQLL-SVDP--------ETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSW----RAHIALAGTWMMLKEYTTAIN 79 (144)
T ss_pred HHHHHHHH-HcCH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHHhhHHHHHH
Confidence 56788888 4555 2467789999999999999999999999999998 999999999999999999999
Q ss_pred HHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHc
Q 003918 483 LMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEH 562 (786)
Q Consensus 483 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 562 (786)
.|++++...| +++..|..+|.++...|++++|+..|++++...|+++..|...+.+....
T Consensus 80 ~y~~Al~l~p--------------------~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 80 FYGHALMLDA--------------------SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred HHHHHHhcCC--------------------CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 9999999999 88999999999999999999999999999999999999998888766543
No 107
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.22 E-value=9e-07 Score=85.87 Aligned_cols=491 Identities=11% Similarity=0.030 Sum_probs=254.9
Q ss_pred hhHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHhcCCChHHH
Q 003918 82 PEYETLNNTFERALVTMH---KMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETS 158 (786)
Q Consensus 82 ~~~~~A~~~~~~al~~~p---~~~~~w~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~w~~~~~~~~~~~~~~~~A 158 (786)
.+|+.|+.+++-.+..+. ++.++|+.+..+. .|+++.|...|+.+.+.+. .+.++|..++-...-.|.+ .+|
T Consensus 36 rDytGAislLefk~~~~~EEE~~~~lWia~C~fh--LgdY~~Al~~Y~~~~~~~~--~~~el~vnLAcc~FyLg~Y-~eA 110 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFH--LGDYEEALNVYTFLMNKDD--APAELGVNLACCKFYLGQY-IEA 110 (557)
T ss_pred ccchhHHHHHHHhhccchhhhHHHHHHHHHHHHh--hccHHHHHHHHHHHhccCC--CCcccchhHHHHHHHHHHH-HHH
Confidence 678888888877776543 3556777666554 4788888888887766433 2467777776655556677 777
Q ss_pred HHHHHHHHccCCCCHHHHHHHHHhcCCHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHhcccccccCCcHHHHHH
Q 003918 159 LRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIR 238 (786)
Q Consensus 159 ~~~~~~~l~~~p~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (786)
..+-.++.+ .|....-++.+..+.|+-++-.+ +....++
T Consensus 111 ~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~----------------------------fh~~LqD------------ 149 (557)
T KOG3785|consen 111 KSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILT----------------------------FHSSLQD------------ 149 (557)
T ss_pred HHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHH----------------------------HHHHHhh------------
Confidence 776666544 33333333333333333222111 1110011
Q ss_pred hhhhccCchhHHHHHHHHHHHHhhccHHHHHHHHHHHhhccCchhcHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccc
Q 003918 239 GGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDE 318 (786)
Q Consensus 239 ~~~~~~p~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (786)
..+-..++|.+....-.|++|+.+|.+.+..+|.-.. ..++.+..-+... . .
T Consensus 150 ---------~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~a-lNVy~ALCyyKlD-------Y-y---------- 201 (557)
T KOG3785|consen 150 ---------TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIA-LNVYMALCYYKLD-------Y-Y---------- 201 (557)
T ss_pred ---------hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhh-hHHHHHHHHHhcc-------h-h----------
Confidence 1233566777777777899999999999987664211 1122222211110 0 0
Q ss_pred ccCCcchhhhHhhhhhhHHHHHHhHhcccccCccchHHHHHHHHHhhhhhchhhhhhhhhhcCCCCHHHHHHHHHhh---
Q 003918 319 EHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIF--- 395 (786)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~--- 395 (786)
+. ... +..+-+++.|++.-+-..+++-.
T Consensus 202 --------------------------------dv--sqe---------------vl~vYL~q~pdStiA~NLkacn~fRl 232 (557)
T KOG3785|consen 202 --------------------------------DV--SQE---------------VLKVYLRQFPDSTIAKNLKACNLFRL 232 (557)
T ss_pred --------------------------------hh--HHH---------------HHHHHHHhCCCcHHHHHHHHHHHhhh
Confidence 00 000 01122677888877665544433
Q ss_pred -cCCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHc-----CChhHHHHHHHHHHhccCCChhhHHHHHHHHHH
Q 003918 396 -EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETY-----KDIANARVIFDKAVQVNYKTVDHLASIWCEWAE 469 (786)
Q Consensus 396 -~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~-----~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~ 469 (786)
.|...+ .-........+. . +..+....+. .+-+.|.+++-..+..-| .+.+.++-
T Consensus 233 ~ngr~ae--~E~k~ladN~~~-----~-----~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IP-------EARlNL~i 293 (557)
T KOG3785|consen 233 INGRTAE--DEKKELADNIDQ-----E-----YPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIP-------EARLNLII 293 (557)
T ss_pred hccchhH--HHHHHHHhcccc-----c-----chhHHHHHHcCeEEEeCCccHHHhchHHHhhCh-------Hhhhhhee
Confidence 244322 112221111111 1 2222233322 334667777776666656 66678888
Q ss_pred HHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHH-------HHHHHHHHH
Q 003918 470 MELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLES-------TRAVYERIL 542 (786)
Q Consensus 470 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-------A~~~~~~al 542 (786)
.+.++++..+|..+.+.. .| .++.-+..-+.+....|+--. |.+.|+-.-
T Consensus 294 YyL~q~dVqeA~~L~Kdl---~P--------------------ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG 350 (557)
T KOG3785|consen 294 YYLNQNDVQEAISLCKDL---DP--------------------TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVG 350 (557)
T ss_pred eecccccHHHHHHHHhhc---CC--------------------CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhc
Confidence 889999999999887765 34 233334444444444443322 333333221
Q ss_pred hhc--cCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCc
Q 003918 543 DLR--IATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPA 620 (786)
Q Consensus 543 ~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 620 (786)
+.. .+...---.++....-..++++.+..++..-..+.+ +...-.+++.... ..|++.+|.++|-+.-...-.
T Consensus 351 ~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~N--dD~Fn~N~AQAk~---atgny~eaEelf~~is~~~ik 425 (557)
T KOG3785|consen 351 ESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTN--DDDFNLNLAQAKL---ATGNYVEAEELFIRISGPEIK 425 (557)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--cchhhhHHHHHHH---HhcChHHHHHHHhhhcChhhh
Confidence 110 011112233444555555677777666655554422 2223333443333 347889999988877544322
Q ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChhHHHHH
Q 003918 621 DAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMC 700 (786)
Q Consensus 621 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~ 700 (786)
+ .......+|.++.+.|.++-|..+|-+. +-+...+.+.......+.+.+.+--|-..|...-.. .|. +..|
T Consensus 426 n-~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l-DP~---pEnW 497 (557)
T KOG3785|consen 426 N-KILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL-DPT---PENW 497 (557)
T ss_pred h-hHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc-CCC---cccc
Confidence 1 2333445788888889888887776542 222233444444444445666776666666665555 665 3344
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHcc-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003918 701 LKYAELEKSLGEIDRARGIYVFASQF-ADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRS 761 (786)
Q Consensus 701 ~~~~~~~~~~g~~~~A~~~~~~al~~-~~p~~~~~~~~~~~~~~~~~G~~~~a~~~~~~~~~ 761 (786)
- |.---...+|...... .+|- .....+..+-+.+..|+ ..++-+++.+|.
T Consensus 498 e---------GKRGACaG~f~~l~~~~~~~~-p~~~~rEVvhllr~~~n-sq~E~mikvvrk 548 (557)
T KOG3785|consen 498 E---------GKRGACAGLFRQLANHKTDPI-PISQMREVVHLLRMKPN-SQCEFMIKVVRK 548 (557)
T ss_pred C---------CccchHHHHHHHHHcCCCCCC-chhHHHHHHHHHHhCCC-chHHHHHHHHHH
Confidence 3 2222233344444432 2333 24444555555555554 344455554444
No 108
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=99.22 E-value=1e-10 Score=117.79 Aligned_cols=137 Identities=25% Similarity=0.460 Sum_probs=118.6
Q ss_pred hHHHHHHHHH-cCChhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCCHHHHHH
Q 003918 29 LWWRYLVAKR-EAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIM 107 (786)
Q Consensus 29 ~w~~~~~~~~-~~~~~~~~~~~~~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~w~~ 107 (786)
.|+.|+++.. .+..+.++.+|++|++..+....+|..++.++... .++.+.|.++|+++++..|.++.+|..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~-------~~d~~~A~~Ife~glk~f~~~~~~~~~ 75 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYC-------NKDPKRARKIFERGLKKFPSDPDFWLE 75 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHT-------CS-HHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh-------CCCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 6999999864 55699999999999977777899999999998863 267777999999999999999999999
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHhhCCCCc-chhhHHHHHHHHHhcCCChHHHHHHHHHHHccCCCCH
Q 003918 108 YLETLTSQKFITKARRTFDRALCALPVTQ-HDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHI 173 (786)
Q Consensus 108 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~w~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 173 (786)
|+.+++..++.+.|+.+|++++...|... ...+|..+++++...|+. +...++++|+.+..|...
T Consensus 76 Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl-~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 76 YLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDL-ESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-H-HHHHHHHHHHHHHTTTS-
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999988764 568999999999999999 999999999999888844
No 109
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.2e-09 Score=107.78 Aligned_cols=277 Identities=13% Similarity=0.045 Sum_probs=136.1
Q ss_pred HHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhh
Q 003918 433 YETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLH 512 (786)
Q Consensus 433 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 512 (786)
+.+..++..|...|..+++.+|++. ..|..-+..+...|++++|.--.++.+++.+.......+...+-...+...
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~~pd~a----~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDMCPDNA----SYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHhCccch----hhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHH
Confidence 3444555666666666666666664 555555555666666666666666665554432211111000000000000
Q ss_pred hcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCH---HHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHH
Q 003918 513 KSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATP---QIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWV 589 (786)
Q Consensus 513 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~ 589 (786)
.....+..+ ..+....|...+++.+..+.+.| ..-..-+.++.-.|++++|.+.--..++. ++.+..+..
T Consensus 135 ~A~~~~~~~-----~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkl--d~~n~~al~ 207 (486)
T KOG0550|consen 135 EAEEKLKSK-----QAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKL--DATNAEALY 207 (486)
T ss_pred HHHHHhhhh-----hhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhc--ccchhHHHH
Confidence 000000000 00122333333343333322222 22223345555566666666666666665 455544433
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCc----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Q 003918 590 TYLSKFVKRYGKTKLERARELFENAVETAPADAV----------KPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEK 659 (786)
Q Consensus 590 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~----------~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 659 (786)
.-...++ -..+.+.|...|++++.++|+... ...|..-|....+.|++..|.+.|..+|.++|.+..
T Consensus 208 vrg~~~y---y~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~ 284 (486)
T KOG0550|consen 208 VRGLCLY---YNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKK 284 (486)
T ss_pred hcccccc---cccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccc
Confidence 2222222 224566666666666666665211 236666666666666666666666666666665422
Q ss_pred h--hHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHcc
Q 003918 660 L--GMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQF 726 (786)
Q Consensus 660 ~--~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 726 (786)
. .++........+.|+..+|+.--+.++++ .|. ....++.-|+.+...+.++.|.+.|++|.+.
T Consensus 285 ~naklY~nra~v~~rLgrl~eaisdc~~Al~i-D~s--yikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 285 TNAKLYGNRALVNIRLGRLREAISDCNEALKI-DSS--YIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred hhHHHHHHhHhhhcccCCchhhhhhhhhhhhc-CHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2 22222233334556666666666666666 443 4555555566666666666666666666654
No 110
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.21 E-value=1.1e-07 Score=94.23 Aligned_cols=290 Identities=14% Similarity=0.119 Sum_probs=185.7
Q ss_pred HHhhcCCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHH
Q 003918 392 VKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEME 471 (786)
Q Consensus 392 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~ 471 (786)
..+.+|++.+|.+...++-+. .+ ...-.++.-+..-.+.|+++.|-.+..++-+..+++. -...+..+++.
T Consensus 93 ~~l~eG~~~qAEkl~~rnae~-~e-----~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~---l~v~ltrarll 163 (400)
T COG3071 93 LKLFEGDFQQAEKLLRRNAEH-GE-----QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDT---LAVELTRARLL 163 (400)
T ss_pred HHHhcCcHHHHHHHHHHhhhc-Cc-----chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCch---HHHHHHHHHHH
Confidence 344568888888887776532 22 3455555666666778888888888888887755443 15566677777
Q ss_pred HhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHH-
Q 003918 472 LRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQ- 550 (786)
Q Consensus 472 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~- 550 (786)
...|++..|+.-..+++...| ..+.+......+|...|++.....+..+.-+..--+..
T Consensus 164 l~~~d~~aA~~~v~~ll~~~p--------------------r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e 223 (400)
T COG3071 164 LNRRDYPAARENVDQLLEMTP--------------------RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEE 223 (400)
T ss_pred HhCCCchhHHHHHHHHHHhCc--------------------CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHH
Confidence 888888888888888888877 66677777777888888888887777776664322221
Q ss_pred -------HHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCc
Q 003918 551 -------IIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAV 623 (786)
Q Consensus 551 -------~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 623 (786)
+|.++..=....+..+.-....+..-.. --.++.+-..|+..+. ..|..++|.++.+.+++..-+
T Consensus 224 ~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~--lr~~p~l~~~~a~~li---~l~~~~~A~~~i~~~Lk~~~D--- 295 (400)
T COG3071 224 AARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK--LRNDPELVVAYAERLI---RLGDHDEAQEIIEDALKRQWD--- 295 (400)
T ss_pred HHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH--hhcChhHHHHHHHHHH---HcCChHHHHHHHHHHHHhccC---
Confidence 1111111111111111111222222221 1234555555555444 347788888888888877654
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChhHHHHHHHH
Q 003918 624 KPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKY 703 (786)
Q Consensus 624 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~ 703 (786)
..+...+..+ +-|+...=.+..++.++.+|++|......+++. .+++.+.+|...|+.+++. .|. ...|..+
T Consensus 296 ~~L~~~~~~l--~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~--~k~~~w~kA~~~leaAl~~-~~s---~~~~~~l 367 (400)
T COG3071 296 PRLCRLIPRL--RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLA--LKNKLWGKASEALEAALKL-RPS---ASDYAEL 367 (400)
T ss_pred hhHHHHHhhc--CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHH--HHhhHHHHHHHHHHHHHhc-CCC---hhhHHHH
Confidence 2333323222 357777778888888888888775555544444 5778888888888888887 665 4467777
Q ss_pred HHHHHHcCChHHHHHHHHHHHcc
Q 003918 704 AELEKSLGEIDRARGIYVFASQF 726 (786)
Q Consensus 704 ~~~~~~~g~~~~A~~~~~~al~~ 726 (786)
|..+.+.|++..|-.+++.++..
T Consensus 368 a~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 368 ADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHcCChHHHHHHHHHHHHH
Confidence 88888888888888888888754
No 111
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.20 E-value=1.6e-08 Score=108.90 Aligned_cols=263 Identities=15% Similarity=0.180 Sum_probs=181.9
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003918 462 SIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERI 541 (786)
Q Consensus 462 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 541 (786)
++.+..+.++...|++++|++.+........ +...+....|.++.++|+.++|..+|...
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~I~--------------------Dk~~~~E~rA~ll~kLg~~~eA~~~y~~L 64 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQIL--------------------DKLAVLEKRAELLLKLGRKEEAEKIYREL 64 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhhCC--------------------CHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666777888889999999999988776655 45566777889999999999999999999
Q ss_pred HhhccCCHHHHHHHHHHHHHc-----ccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHH
Q 003918 542 LDLRIATPQIIINYALLLEEH-----KYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKL-ERARELFENAV 615 (786)
Q Consensus 542 l~~~p~~~~~~~~~~~~~~~~-----g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~A~~~~~~al 615 (786)
+..+|++...+..+..+..-. ...+.-.++|+..... .|.....-..-+.++. + ..+ ..+..+....+
T Consensus 65 i~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~---g-~~F~~~~~~yl~~~l 138 (517)
T PF12569_consen 65 IDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLE---G-DEFKERLDEYLRPQL 138 (517)
T ss_pred HHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHh--CccccchhHhhcccCC---H-HHHHHHHHHHHHHHH
Confidence 999999988888887776222 2567778888877776 3654322211111111 0 112 34555555555
Q ss_pred hhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---C----------CCCchhhHHHHH--HHHHHHhcChhHHH
Q 003918 616 ETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKA---V----------PNHEKLGMYEIY--IARAAEIFGVPKTR 680 (786)
Q Consensus 616 ~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~---~----------p~~~~~~~~~~~--~~~~~~~~~~~~A~ 680 (786)
..+ .+.++..+-.+|.......-..+++...... . +.+|...+|..+ ..++...|++++|.
T Consensus 139 ~Kg----vPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al 214 (517)
T PF12569_consen 139 RKG----VPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKAL 214 (517)
T ss_pred hcC----CchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHH
Confidence 543 2345666666655333333333333333221 1 112334344333 45566789999999
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003918 681 EIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIK 759 (786)
Q Consensus 681 ~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~G~~~~a~~~~~~~ 759 (786)
+++++||.. .|. .++.++.-|.++.+.|++.+|.++++.|... |+. +--+-..-+.+..+.|+.++|.+++...
T Consensus 215 ~~Id~aI~h-tPt--~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L-D~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~F 288 (517)
T PF12569_consen 215 EYIDKAIEH-TPT--LVELYMTKARILKHAGDLKEAAEAMDEAREL-DLA-DRYINSKCAKYLLRAGRIEEAEKTASLF 288 (517)
T ss_pred HHHHHHHhc-CCC--cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC-Chh-hHHHHHHHHHHHHHCCCHHHHHHHHHhh
Confidence 999999999 888 6778888899999999999999999999987 665 5667777888899999999999888644
No 112
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.20 E-value=3.7e-10 Score=107.12 Aligned_cols=119 Identities=13% Similarity=0.189 Sum_probs=89.5
Q ss_pred cCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcH
Q 003918 436 YKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSL 515 (786)
Q Consensus 436 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (786)
.++.++++..+++++..+|++. ..|..++.++...|++++|...|++++...| +++
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~----~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P--------------------~~~ 107 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNS----EQWALLGEYYLWRNDYDNALLAYRQALQLRG--------------------ENA 107 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--------------------CCH
Confidence 4556677777777777777776 7777777777777777777777777777777 677
Q ss_pred HHHHHHHHHH-HHcCC--hHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 003918 516 RLWTFYVDLE-ESLGN--LESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKI 578 (786)
Q Consensus 516 ~~~~~~~~~~-~~~g~--~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 578 (786)
.++..++.++ ...|+ .++|+.+++++++.+|+++.++..+|..+...|++++|+..++++++.
T Consensus 108 ~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 108 ELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7777777753 55565 477777777777777777777777777777777777777777777776
No 113
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=99.17 E-value=3.7e-10 Score=113.74 Aligned_cols=141 Identities=28% Similarity=0.516 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHc-ccHHHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 003918 516 RLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEH-KYFEDAFRVYERGVKIFKYPHVKDIWVTYLSK 594 (786)
Q Consensus 516 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~ 594 (786)
.+|..|..+..+.+..+.|+.+|++|++..+.+..+|..+|.++.+. ++.+.|..+|+++++.+ |.+..+|..|+++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
Confidence 46889999999988999999999999976666789999999998885 56666999999999984 9999999999988
Q ss_pred HHHHhCCCChHHHHHHHHHHHhhCCccC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhh
Q 003918 595 FVKRYGKTKLERARELFENAVETAPADA-VKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLG 661 (786)
Q Consensus 595 ~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 661 (786)
+.. .++.+.||.+|++++...|.+. ...+|..++.++.+.|+++...++.+++.+..|....+.
T Consensus 80 l~~---~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~ 144 (280)
T PF05843_consen 80 LIK---LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLE 144 (280)
T ss_dssp HHH---TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHH
T ss_pred HHH---hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHH
Confidence 763 4789999999999999988754 567999999999999999999999999999999754443
No 114
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.16 E-value=1.6e-09 Score=114.50 Aligned_cols=216 Identities=19% Similarity=0.231 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCC
Q 003918 425 LWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGN 504 (786)
Q Consensus 425 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 504 (786)
.-..++..+.+.|-...|..+|++. ..|...+.+|...|+...|..+..+-++.+|
T Consensus 400 ~q~~laell~slGitksAl~I~Erl------------emw~~vi~CY~~lg~~~kaeei~~q~lek~~------------ 455 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERL------------EMWDPVILCYLLLGQHGKAEEINRQELEKDP------------ 455 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhH------------HHHHHHHHHHHHhcccchHHHHHHHHhcCCC------------
Confidence 3366788888888888888888875 6677777777788888888888888887555
Q ss_pred hhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcc-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCC
Q 003918 505 EPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRI-ATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPH 583 (786)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~ 583 (786)
++.+|..+|++.... .+|+++.+... .+..+-..+|......++++++.+.+++.+++ +|-
T Consensus 456 ---------d~~lyc~LGDv~~d~-------s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~--npl 517 (777)
T KOG1128|consen 456 ---------DPRLYCLLGDVLHDP-------SLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEI--NPL 517 (777)
T ss_pred ---------cchhHHHhhhhccCh-------HHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhc--Ccc
Confidence 445555555543322 23333333211 12223333444444456666666666666665 466
Q ss_pred hHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHH
Q 003918 584 VKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMY 663 (786)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 663 (786)
....|+.++.... ..++++.|.+.|.+++...|+ +.+.|.+++..+.+.|+..+|...++++++-+-. ...+|
T Consensus 518 q~~~wf~~G~~AL---qlek~q~av~aF~rcvtL~Pd--~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~--~w~iW 590 (777)
T KOG1128|consen 518 QLGTWFGLGCAAL---QLEKEQAAVKAFHRCVTLEPD--NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ--HWQIW 590 (777)
T ss_pred chhHHHhccHHHH---HHhhhHHHHHHHHHHhhcCCC--chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC--CCeee
Confidence 6666665443332 224566666666666666666 4566666666666666666666666666665422 33444
Q ss_pred HHHHHHHHHhcChhHHHHHHHHHHHh
Q 003918 664 EIYIARAAEIFGVPKTREIYEQAIES 689 (786)
Q Consensus 664 ~~~~~~~~~~~~~~~A~~~~~~al~~ 689 (786)
..|.....+.|.+++|.+.+.+.+..
T Consensus 591 ENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 591 ENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred echhhhhhhcccHHHHHHHHHHHHHh
Confidence 45555445566666666666666554
No 115
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.16 E-value=1.2e-08 Score=114.72 Aligned_cols=227 Identities=11% Similarity=0.010 Sum_probs=120.7
Q ss_pred ccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCCh
Q 003918 452 VNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNL 531 (786)
Q Consensus 452 ~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 531 (786)
.+|.+. .+|..++..+...+++++|.++.+.++..+| +...+|+..|.++.+.+++
T Consensus 26 ~~p~n~----~a~~~Li~~~~~~~~~deai~i~~~~l~~~P--------------------~~i~~yy~~G~l~~q~~~~ 81 (906)
T PRK14720 26 YSLSKF----KELDDLIDAYKSENLTDEAKDICEEHLKEHK--------------------KSISALYISGILSLSRRPL 81 (906)
T ss_pred CCcchH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--------------------cceehHHHHHHHHHhhcch
Confidence 356665 8899999999899999999999999999999 6778888888888787776
Q ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHH
Q 003918 532 ESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELF 611 (786)
Q Consensus 532 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 611 (786)
+.+.-+ .++...+.+. ++ .+++.+...+.. .|.+..+...++. ++. .+|+.++|..+|
T Consensus 82 ~~~~lv--~~l~~~~~~~--------------~~-~~ve~~~~~i~~--~~~~k~Al~~LA~-~Yd--k~g~~~ka~~~y 139 (906)
T PRK14720 82 NDSNLL--NLIDSFSQNL--------------KW-AIVEHICDKILL--YGENKLALRTLAE-AYA--KLNENKKLKGVW 139 (906)
T ss_pred hhhhhh--hhhhhccccc--------------ch-hHHHHHHHHHHh--hhhhhHHHHHHHH-HHH--HcCChHHHHHHH
Confidence 666555 5555544443 12 222222222221 2333334443322 222 224555555555
Q ss_pred HHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch----hhHHHHHHHHHHHhcChhHHHHHHHHHH
Q 003918 612 ENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEK----LGMYEIYIARAAEIFGVPKTREIYEQAI 687 (786)
Q Consensus 612 ~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al 687 (786)
+++++.+|+ ++.+..++|.++... ++++|+.++.+++...-+... ..+|..++.. ...+.+.=.++.++.+
T Consensus 140 er~L~~D~~--n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~~ki~ 214 (906)
T PRK14720 140 ERLVKADRD--NPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHY--NSDDFDFFLRIERKVL 214 (906)
T ss_pred HHHHhcCcc--cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhc--CcccchHHHHHHHHHH
Confidence 555555555 445555555555555 555555555555543211100 0111111110 0011111112222222
Q ss_pred HhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCC
Q 003918 688 ESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRS 731 (786)
Q Consensus 688 ~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~~ 731 (786)
.. .........+.-+-..|...++++++..++..+++. +|++
T Consensus 215 ~~-~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~-~~~n 256 (906)
T PRK14720 215 GH-REFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEH-DNKN 256 (906)
T ss_pred hh-hccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc-CCcc
Confidence 22 111112334444445566667778888888888876 5664
No 116
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.14 E-value=2.2e-07 Score=100.02 Aligned_cols=363 Identities=18% Similarity=0.266 Sum_probs=248.0
Q ss_pred hhhcCCCCHHHHHHHHHhh-----cCCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHc-------CChhHHHH
Q 003918 377 LLRQNPHNVEQWHRRVKIF-----EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETY-------KDIANARV 444 (786)
Q Consensus 377 ~l~~~p~~~~~~~~~~~~~-----~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~-------~~~~~A~~ 444 (786)
+.+..|..+..|+.++.-. .++..++...|++++.. . .++.+|..++.+.... ++++.-+.
T Consensus 139 ~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~d--y-----~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~ 211 (881)
T KOG0128|consen 139 MSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGD--Y-----NSVPIWEEVVNYLVGFGNVAKKSEDYKKERS 211 (881)
T ss_pred HHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcc--c-----ccchHHHHHHHHHHhccccccccccchhhhH
Confidence 3567888888888776654 26788899999999943 2 5788999999887643 56888999
Q ss_pred HHHHHHhccCCChhhHHHHHHHHHHHH---HhccCHHHHHHHHHHHhcCCchHH------hhhh-----h-----ccCC-
Q 003918 445 IFDKAVQVNYKTVDHLASIWCEWAEME---LRHKNFKGALELMRRATAEPSVEV------RRRV-----A-----ADGN- 504 (786)
Q Consensus 445 ~~~~al~~~p~~~~~~~~~~~~~a~~~---~~~g~~~~A~~~~~~al~~~~~~~------~~~~-----~-----~~~~- 504 (786)
+|++++..-..+......+|..+.+++ ..+-..++.+.++.+.+..+-+.- .+-. . .+.+
T Consensus 212 vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~ 291 (881)
T KOG0128|consen 212 VFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQPLDEDTRGWDLSEQSKAHVYDVETKKLDDAL 291 (881)
T ss_pred HHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcchHHHHhccHHHHH
Confidence 999999866555545457777776655 344455778888888887764211 0000 0 0000
Q ss_pred ----------hhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHH-HHcccHHHHHHHHH
Q 003918 505 ----------EPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLL-EEHKYFEDAFRVYE 573 (786)
Q Consensus 505 ----------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~g~~~~A~~~~~ 573 (786)
.........-...|..|++++...|+...-..++++++...+.++..|+.++... ...+-.+.+...+.
T Consensus 292 ~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ 371 (881)
T KOG0128|consen 292 KNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHP 371 (881)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccc
Confidence 0000111234567899999999999999999999999999999999999998776 44566778889999
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCC------HHHHHHHH
Q 003918 574 RGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGL------AKRAMKVY 647 (786)
Q Consensus 574 ~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~------~~~A~~~~ 647 (786)
+++.. +|....+|..+.-.+. + ..-........+++++...- .++..+..+....++ ++.-++.|
T Consensus 372 ra~R~--cp~tgdL~~rallAle-R-~re~~~vI~~~l~~~ls~~~-----~l~~~~~~~rr~~~~~~~s~~~s~lr~~F 442 (881)
T KOG0128|consen 372 RAVRS--CPWTGDLWKRALLALE-R-NREEITVIVQNLEKDLSMTV-----ELHNDYLAYRRRCTNIIDSQDYSSLRAAF 442 (881)
T ss_pred hhhcC--CchHHHHHHHHHHHHH-h-cCcchhhHHHHHHHHHHHHH-----HHHHHHHHHHHhhcccchhhhHHHHHHHH
Confidence 99996 7999999998764333 3 22345666677777765522 233333333333332 33344444
Q ss_pred HHHHhcCC------CCchhhHHHHHHHHHH-HhcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHH
Q 003918 648 DQATKAVP------NHEKLGMYEIYIARAA-EIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIY 720 (786)
Q Consensus 648 ~~~l~~~p------~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 720 (786)
..+....- .++...+...|...+. -.++++++|.++...+..+ .......|+.+.+++...|+...||.++
T Consensus 443 ~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~--~~~iag~Wle~~~lE~~~g~~~~~R~~~ 520 (881)
T KOG0128|consen 443 NHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYG--GGSIAGKWLEAINLEREYGDGPSARKVL 520 (881)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCC--cchHHHHHHHHHhHHHHhCCchhHHHHH
Confidence 44432211 1223344444444433 4589999999999998773 3225559999999999999999999999
Q ss_pred HHHHcc-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003918 721 VFASQF-ADPRSDTEFWNRWHEFEVNHGNEDTFREMLR 757 (786)
Q Consensus 721 ~~al~~-~~p~~~~~~~~~~~~~~~~~G~~~~a~~~~~ 757 (786)
++|... .+|+..-.+...|..+++..|+++.+.....
T Consensus 521 R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~~~ 558 (881)
T KOG0128|consen 521 RKAYSQVVDPEDALEVLEFFRRFEREYGTLESFDLCPE 558 (881)
T ss_pred HHHHhcCcCchhHHHHHHHHHHHHhccccHHHHhhhHH
Confidence 999875 2333124788889999999999988866653
No 117
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.13 E-value=2.7e-08 Score=92.30 Aligned_cols=157 Identities=17% Similarity=0.162 Sum_probs=102.2
Q ss_pred hccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHH
Q 003918 473 RHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQII 552 (786)
Q Consensus 473 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 552 (786)
..|+.+-|..++++.....| ++.++-...+..+...|++++|.++|++.++.+|.+..++
T Consensus 64 d~~~~~lAq~C~~~L~~~fp--------------------~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~ 123 (289)
T KOG3060|consen 64 DTGRDDLAQKCINQLRDRFP--------------------GSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIR 123 (289)
T ss_pred HhcchHHHHHHHHHHHHhCC--------------------CChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHH
Confidence 35666666666666666556 5556666666666667777777777777777777666666
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHH
Q 003918 553 INYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAK 632 (786)
Q Consensus 553 ~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~ 632 (786)
..-..+.-.+|+.-+|++-+..-++.| |.+.++|......+. ..|++.+|.-+++.++-..|- ++..+..+|.
T Consensus 124 KRKlAilka~GK~l~aIk~ln~YL~~F--~~D~EAW~eLaeiY~---~~~~f~kA~fClEE~ll~~P~--n~l~f~rlae 196 (289)
T KOG3060|consen 124 KRKLAILKAQGKNLEAIKELNEYLDKF--MNDQEAWHELAEIYL---SEGDFEKAAFCLEELLLIQPF--NPLYFQRLAE 196 (289)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHh--cCcHHHHHHHHHHHH---hHhHHHHHHHHHHHHHHcCCC--cHHHHHHHHH
Confidence 666666666676667777777777663 666677766555444 235677777777777777666 4556666666
Q ss_pred HHHHcC---CHHHHHHHHHHHHhcCCC
Q 003918 633 LEEDYG---LAKRAMKVYDQATKAVPN 656 (786)
Q Consensus 633 ~~~~~g---~~~~A~~~~~~~l~~~p~ 656 (786)
+++..| +++-|+++|.++++.+|.
T Consensus 197 ~~Yt~gg~eN~~~arkyy~~alkl~~~ 223 (289)
T KOG3060|consen 197 VLYTQGGAENLELARKYYERALKLNPK 223 (289)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhChH
Confidence 666655 344566777777776663
No 118
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.13 E-value=3.2e-09 Score=112.35 Aligned_cols=215 Identities=14% Similarity=0.178 Sum_probs=173.4
Q ss_pred HHHHHhhc--CCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHH
Q 003918 389 HRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCE 466 (786)
Q Consensus 389 ~~~~~~~~--~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 466 (786)
..++.++. |-..+|+..|++ +..|...+.+|...|+..+|..+..+-++. |.++ .+|..
T Consensus 402 ~~laell~slGitksAl~I~Er--------------lemw~~vi~CY~~lg~~~kaeei~~q~lek-~~d~----~lyc~ 462 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFER--------------LEMWDPVILCYLLLGQHGKAEEINRQELEK-DPDP----RLYCL 462 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHh--------------HHHHHHHHHHHHHhcccchHHHHHHHHhcC-CCcc----hhHHH
Confidence 44555553 777778887776 357888899999999999999999999984 4444 78888
Q ss_pred HHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcc
Q 003918 467 WAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRI 546 (786)
Q Consensus 467 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p 546 (786)
++++.....-++.|.++.+.. +..+-..++......++++++.+.|+..++++|
T Consensus 463 LGDv~~d~s~yEkawElsn~~--------------------------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~np 516 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYI--------------------------SARAQRSLALLILSNKDFSEADKHLERSLEINP 516 (777)
T ss_pred hhhhccChHHHHHHHHHhhhh--------------------------hHHHHHhhccccccchhHHHHHHHHHHHhhcCc
Confidence 877766555555555554432 223333444444557899999999999999999
Q ss_pred CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHH
Q 003918 547 ATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPL 626 (786)
Q Consensus 547 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 626 (786)
-.+..|+.+|-+..+.++++.|.+.|.+++.. +|++...|+++...+.. .++-.+|...++++++.+-+ +..+
T Consensus 517 lq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~---~~~k~ra~~~l~EAlKcn~~--~w~i 589 (777)
T KOG1128|consen 517 LQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIR---LKKKKRAFRKLKEALKCNYQ--HWQI 589 (777)
T ss_pred cchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHH---HhhhHHHHHHHHHHhhcCCC--CCee
Confidence 99999999999999999999999999999997 89999999997665553 36789999999999999866 6889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 003918 627 YLQYAKLEEDYGLAKRAMKVYDQATKAVP 655 (786)
Q Consensus 627 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p 655 (786)
|.+|..+....|+.+.|++.|.+.+....
T Consensus 590 WENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 590 WENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred eechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999886544
No 119
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.11 E-value=3.7e-09 Score=118.18 Aligned_cols=146 Identities=13% Similarity=0.049 Sum_probs=128.0
Q ss_pred CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhh
Q 003918 421 KPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVA 500 (786)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 500 (786)
..+.++..+|.+..+.|.+++|...+++++...|++. .++..++..+.+.+++++|+..+++++...|
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~----~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-------- 151 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSS----EAFILMLRGVKRQQGIEAGRAEIELYFSGGS-------- 151 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcH----HHHHHHHHHHHHhccHHHHHHHHHHHhhcCC--------
Confidence 4678889999999999999999999999999999997 8899999999999999999999999999999
Q ss_pred ccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcC
Q 003918 501 ADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFK 580 (786)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~ 580 (786)
++......++.+....|++++|..+|++++..+|+++.+|..+|..+...|+.++|...|+++++..
T Consensus 152 ------------~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~- 218 (694)
T PRK15179 152 ------------SSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI- 218 (694)
T ss_pred ------------CCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-
Confidence 7888888999999999999999999999999889999999999999999999999999999999985
Q ss_pred CCChHHHHHHHH
Q 003918 581 YPHVKDIWVTYL 592 (786)
Q Consensus 581 ~p~~~~~~~~~~ 592 (786)
.|.. ..+..++
T Consensus 219 ~~~~-~~~~~~~ 229 (694)
T PRK15179 219 GDGA-RKLTRRL 229 (694)
T ss_pred Ccch-HHHHHHH
Confidence 3433 3444443
No 120
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.09 E-value=1.6e-08 Score=94.96 Aligned_cols=164 Identities=16% Similarity=0.200 Sum_probs=132.0
Q ss_pred CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhh
Q 003918 421 KPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVA 500 (786)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 500 (786)
....+ ..++..+...|+-+.+..+..++...+|.+. .+...++....+.|++..|...++++....|
T Consensus 65 ~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~----~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-------- 131 (257)
T COG5010 65 EDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDR----ELLAAQGKNQIRNGNFGEAVSVLRKAARLAP-------- 131 (257)
T ss_pred chHHH-HHHHHHHHhcccccchHHHHhhhhccCcccH----HHHHHHHHHHHHhcchHHHHHHHHHHhccCC--------
Confidence 45566 8888888888888888888888888888876 6666688888899999999999999999888
Q ss_pred ccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcC
Q 003918 501 ADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFK 580 (786)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~ 580 (786)
++..+|..++-.+.+.|+++.|+..|.+++++.|++|.+..+++..+.-.|+++.|..++.++...
T Consensus 132 ------------~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~-- 197 (257)
T COG5010 132 ------------TDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS-- 197 (257)
T ss_pred ------------CChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC--
Confidence 788999999999999999999999999999999999999999999999999999999988888875
Q ss_pred CCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 003918 581 YPHVKDIWVTYLSKFVKRYGKTKLERARELFENA 614 (786)
Q Consensus 581 ~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 614 (786)
-+.+..+-.+.. .... ..|++.+|+.+-.+=
T Consensus 198 ~~ad~~v~~NLA-l~~~--~~g~~~~A~~i~~~e 228 (257)
T COG5010 198 PAADSRVRQNLA-LVVG--LQGDFREAEDIAVQE 228 (257)
T ss_pred CCCchHHHHHHH-HHHh--hcCChHHHHhhcccc
Confidence 233555444432 2222 357788888775543
No 121
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.09 E-value=1.7e-08 Score=94.69 Aligned_cols=176 Identities=18% Similarity=0.129 Sum_probs=121.3
Q ss_pred HHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHH
Q 003918 442 ARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFY 521 (786)
Q Consensus 442 A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (786)
+...+-+....+|++. .+ ..++..+...|+-+.+..+..++...++ .+..+...+
T Consensus 52 a~~al~~~~~~~p~d~----~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~--------------------~d~~ll~~~ 106 (257)
T COG5010 52 AAAALGAAVLRNPEDL----SI-AKLATALYLRGDADSSLAVLQKSAIAYP--------------------KDRELLAAQ 106 (257)
T ss_pred HHHHHHHHHhcCcchH----HH-HHHHHHHHhcccccchHHHHhhhhccCc--------------------ccHHHHHHH
Confidence 4444445555577665 55 6666666777777777777777666666 455555556
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCC
Q 003918 522 VDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGK 601 (786)
Q Consensus 522 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~ 601 (786)
+......|++..|+..|.++....|++..+|..+|..|.+.|+++.|...|.++++. .|.++.+..+++..++. .
T Consensus 107 gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L---~ 181 (257)
T COG5010 107 GKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALEL--APNEPSIANNLGMSLLL---R 181 (257)
T ss_pred HHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHH---c
Confidence 777777777777777777777777777777777777777777777777777777777 46666666665544442 2
Q ss_pred CChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003918 602 TKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQ 649 (786)
Q Consensus 602 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 649 (786)
|+++.|+.++.++....+. +..+-.+++......|++.+|..+...
T Consensus 182 gd~~~A~~lll~a~l~~~a--d~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 182 GDLEDAETLLLPAYLSPAA--DSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred CCHHHHHHHHHHHHhCCCC--chHHHHHHHHHHhhcCChHHHHhhccc
Confidence 6777777777777776665 456777777777777777777766544
No 122
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.07 E-value=1.4e-08 Score=113.74 Aligned_cols=133 Identities=16% Similarity=0.113 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 003918 461 ASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYER 540 (786)
Q Consensus 461 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 540 (786)
...+..++.+..+.|.+++|..+++++++..| ++..++..++.++.+.+++++|+..+++
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~P--------------------d~~~a~~~~a~~L~~~~~~eeA~~~~~~ 145 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFP--------------------DSSEAFILMLRGVKRQQGIEAGRAEIEL 145 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC--------------------CcHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 34555555555555555555555555555555 4555555555555555555555555555
Q ss_pred HHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhC
Q 003918 541 ILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETA 618 (786)
Q Consensus 541 al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 618 (786)
++..+|+++...+.+|.++.+.|++++|+.+|++++.. +|++..+|..++..+. ..|+.++|...|+++++..
T Consensus 146 ~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~---~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 146 YFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLT---RRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhh
Confidence 55555555555555555555555555555555555552 4555555555443333 2255555555555555553
No 123
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.07 E-value=2.3e-09 Score=95.95 Aligned_cols=109 Identities=16% Similarity=0.144 Sum_probs=58.3
Q ss_pred HHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHH
Q 003918 446 FDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLE 525 (786)
Q Consensus 446 ~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (786)
|++++..+|++. .....++..+...|++++|...|++++...| .++.+|..++.++
T Consensus 6 ~~~~l~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p--------------------~~~~~~~~la~~~ 61 (135)
T TIGR02552 6 LKDLLGLDSEQL----EQIYALAYNLYQQGRYDEALKLFQLLAAYDP--------------------YNSRYWLGLAACC 61 (135)
T ss_pred HHHHHcCChhhH----HHHHHHHHHHHHcccHHHHHHHHHHHHHhCC--------------------CcHHHHHHHHHHH
Confidence 444555555444 4444455555555555555555555555555 4445555555555
Q ss_pred HHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 003918 526 ESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKI 578 (786)
Q Consensus 526 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 578 (786)
...|++++|...|++++..+|.++..+..+|.++...|++++|+..++++++.
T Consensus 62 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 62 QMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55555555555555555555555555555555555555555555555555554
No 124
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.05 E-value=8.9e-09 Score=92.17 Aligned_cols=119 Identities=17% Similarity=0.208 Sum_probs=103.8
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 003918 536 AVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAV 615 (786)
Q Consensus 536 ~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 615 (786)
..|++++...|++..+...++..+...|++++|+..+++++.. +|.++.+|...+..+.. .|++++|..+|++++
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~---~~~~~~A~~~~~~~~ 78 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQM---LKEYEEAIDAYALAA 78 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 4688999999999999999999999999999999999999997 68899999886655542 378999999999999
Q ss_pred hhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhh
Q 003918 616 ETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLG 661 (786)
Q Consensus 616 ~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 661 (786)
...|. +...+..+|.++...|++++|...|+++++..|++....
T Consensus 79 ~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 79 ALDPD--DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred hcCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 99998 678899999999999999999999999999999765443
No 125
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=99.01 E-value=8.5e-09 Score=105.94 Aligned_cols=118 Identities=25% Similarity=0.390 Sum_probs=102.0
Q ss_pred CCCcchHhHHHHhhCCCChHhHHHHHHHHHc-----C--------ChhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Q 003918 9 PSEDDLLYEEELLRNPFSLKLWWRYLVAKRE-----A--------PFKKRFVIYERALKALPGSYKLWHAYLIERLSIVK 75 (786)
Q Consensus 9 ~~~~~~~~~~~l~~~p~~~~~w~~~~~~~~~-----~--------~~~~~~~~~~~al~~~P~~~~~w~~~~~~~~~~~~ 75 (786)
|.++...|++.|..||.|+++|+.++.+... . -.+....+|++||+.+|++..+|..|+......
T Consensus 1 i~~r~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~-- 78 (321)
T PF08424_consen 1 IRKRTAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKV-- 78 (321)
T ss_pred CchHHHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--
Confidence 3567889999999999999999999987641 1 135667899999999999999999999988765
Q ss_pred CCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHc---CCcHHHHHHHHHHHHhhCCC
Q 003918 76 NLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTS---QKFITKARRTFDRALCALPV 134 (786)
Q Consensus 76 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~w~~~~~~~~~---~~~~~~A~~~~~~al~~~p~ 134 (786)
.+.+...+.+++++..+|+++.+|..|+.+... ...++..+.+|.+||+....
T Consensus 79 ------~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~ 134 (321)
T PF08424_consen 79 ------WDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSR 134 (321)
T ss_pred ------CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH
Confidence 577888999999999999999999999999886 34689999999999987664
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.96 E-value=7e-08 Score=98.28 Aligned_cols=153 Identities=14% Similarity=-0.002 Sum_probs=131.3
Q ss_pred CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhh
Q 003918 421 KPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVA 500 (786)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 500 (786)
....+++..|..+...|+++.|+..+...+...|+++ -++...++++...++..+|.+.+++++...|
T Consensus 304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~----~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P-------- 371 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNP----YYLELAGDILLEANKAKEAIERLKKALALDP-------- 371 (484)
T ss_pred cchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--------
Confidence 4567889999999999999999999999999999998 8888899999999999999999999999999
Q ss_pred ccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcC
Q 003918 501 ADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFK 580 (786)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~ 580 (786)
+...++..|+..+.+.|++.+|+.++.+.+..+|++|..|..++..|...|+..++...+......
T Consensus 372 ------------~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~-- 437 (484)
T COG4783 372 ------------NSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYAL-- 437 (484)
T ss_pred ------------CccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh--
Confidence 678899999999999999999999999999999999999999999999999877765544433221
Q ss_pred CCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCC
Q 003918 581 YPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAP 619 (786)
Q Consensus 581 ~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 619 (786)
.|.+++|+..+.++.+...
T Consensus 438 --------------------~G~~~~A~~~l~~A~~~~~ 456 (484)
T COG4783 438 --------------------AGRLEQAIIFLMRASQQVK 456 (484)
T ss_pred --------------------CCCHHHHHHHHHHHHHhcc
Confidence 2667777777777777653
No 127
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.94 E-value=1.6e-05 Score=95.98 Aligned_cols=320 Identities=14% Similarity=0.058 Sum_probs=206.7
Q ss_pred hhcCCchhHHHHHHHHHhccCCCc--cC-CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChh-hHHHHHHHHHH
Q 003918 394 IFEGNPTKQILTYTEAVRTVDPMK--AV-GKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVD-HLASIWCEWAE 469 (786)
Q Consensus 394 ~~~~~~~~a~~~~~~al~~~~~~~--~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~a~ 469 (786)
...++++++...+..+........ .. .....+....+..+...|++++|...+++++...+.... .....+..++.
T Consensus 420 ~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~ 499 (903)
T PRK04841 420 QSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGE 499 (903)
T ss_pred HHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 345888999998888764332210 00 011233344566778899999999999999985444321 12234556677
Q ss_pred HHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccC--
Q 003918 470 MELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIA-- 547 (786)
Q Consensus 470 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-- 547 (786)
.+...|++++|...+++++...... + ..+........++.++...|+++.|...+++++.....
T Consensus 500 ~~~~~G~~~~A~~~~~~al~~~~~~-----g---------~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~ 565 (903)
T PRK04841 500 VHHCKGELARALAMMQQTEQMARQH-----D---------VYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQH 565 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhh-----c---------chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Confidence 7888999999999999998643300 0 00012234556677888999999999999999886221
Q ss_pred ------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCC--CCh-HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhC
Q 003918 548 ------TPQIIINYALLLEEHKYFEDAFRVYERGVKIFKY--PHV-KDIWVTYLSKFVKRYGKTKLERARELFENAVETA 618 (786)
Q Consensus 548 ------~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~--p~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 618 (786)
...++..++.++...|++++|...+.+++..... |.. ...+.. +.... ...|+++.|...++++....
T Consensus 566 ~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-la~~~--~~~G~~~~A~~~l~~a~~~~ 642 (903)
T PRK04841 566 LEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAM-LAKIS--LARGDLDNARRYLNRLENLL 642 (903)
T ss_pred cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHH-HHHHH--HHcCCHHHHHHHHHHHHHHH
Confidence 1234556788888999999999999999886321 111 222221 11222 24589999999999998764
Q ss_pred CccCcHHHH-H----HHHHHHHHcCCHHHHHHHHHHHHhcCCCCchh--hHHHHHHHHHHHhcChhHHHHHHHHHHHhc-
Q 003918 619 PADAVKPLY-L----QYAKLEEDYGLAKRAMKVYDQATKAVPNHEKL--GMYEIYIARAAEIFGVPKTREIYEQAIESG- 690 (786)
Q Consensus 619 p~~~~~~~~-~----~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~al~~~- 690 (786)
+.......+ . .....+...|+.+.|...+.......+..... ..+..........|++++|...+++++...
T Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~ 722 (903)
T PRK04841 643 GNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENAR 722 (903)
T ss_pred hcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 321111111 1 11233345799999999987766533222211 112233334456799999999999998751
Q ss_pred -CC-ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCC
Q 003918 691 -LP-DKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPR 730 (786)
Q Consensus 691 -~p-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~ 730 (786)
.+ ..........++.++...|+.++|...+.+|++...+.
T Consensus 723 ~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 723 SLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 11 11134567788999999999999999999999985454
No 128
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.93 E-value=4.5e-08 Score=85.84 Aligned_cols=97 Identities=19% Similarity=0.166 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003918 462 SIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERI 541 (786)
Q Consensus 462 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 541 (786)
+..+.++......|++++|.++|+-+...+| .+...|+.+|.++..+|++.+|+.+|.++
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp--------------------~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A 95 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDA--------------------WSFDYWFRLGECCQAQKHWGEAIYAYGRA 95 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--------------------ccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4456666677778888888888888887777 67788888888888888888888888888
Q ss_pred HhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 003918 542 LDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKI 578 (786)
Q Consensus 542 l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 578 (786)
+.++|++|..+.+.|.++...|+.+.|++.|+.++..
T Consensus 96 ~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 96 AQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888876
No 129
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.92 E-value=7.1e-06 Score=88.08 Aligned_cols=196 Identities=14% Similarity=0.126 Sum_probs=102.8
Q ss_pred HHHHHHHHhhc--CCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHH
Q 003918 386 EQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASI 463 (786)
Q Consensus 386 ~~~~~~~~~~~--~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 463 (786)
..|..++++++ |+.+.|+.+|..|- -|+.+..+..-+|+.++|-.+-++. .+. .+
T Consensus 913 ~L~~WWgqYlES~GemdaAl~~Y~~A~--------------D~fs~VrI~C~qGk~~kAa~iA~es-----gd~----AA 969 (1416)
T KOG3617|consen 913 SLYSWWGQYLESVGEMDAALSFYSSAK--------------DYFSMVRIKCIQGKTDKAARIAEES-----GDK----AA 969 (1416)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHhh--------------hhhhheeeEeeccCchHHHHHHHhc-----ccH----HH
Confidence 44555555554 66666666666543 1344444555566666665554432 122 44
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003918 464 WCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILD 543 (786)
Q Consensus 464 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 543 (786)
.+.++..|...|++.+|+..|.|+-.... .+.+....+ ++.- +..-++-
T Consensus 970 cYhlaR~YEn~g~v~~Av~FfTrAqafsn----------------------------AIRlcKEnd-~~d~--L~nlal~ 1018 (1416)
T KOG3617|consen 970 CYHLARMYENDGDVVKAVKFFTRAQAFSN----------------------------AIRLCKEND-MKDR--LANLALM 1018 (1416)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHH----------------------------HHHHHHhcC-HHHH--HHHHHhh
Confidence 55666666666666666666666532222 122221111 1111 1111121
Q ss_pred hccCCHHHHHHHHHHHHHcc-cHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccC
Q 003918 544 LRIATPQIIINYALLLEEHK-YFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADA 622 (786)
Q Consensus 544 ~~p~~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 622 (786)
-.| .-....+.+|...| +.+.|..+|.+|=.+. .+ +...+...++ .|.++..+= ++|+.
T Consensus 1019 s~~---~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~------kA-------LelAF~tqQf-~aL~lIa~D--Ld~~s- 1078 (1416)
T KOG3617|consen 1019 SGG---SDLVSAARYYEELGGYAHKAVMLYHKAGMIG------KA-------LELAFRTQQF-SALDLIAKD--LDAGS- 1078 (1416)
T ss_pred cCc---hhHHHHHHHHHHcchhhhHHHHHHHhhcchH------HH-------HHHHHhhccc-HHHHHHHHh--cCCCC-
Confidence 111 22334567777776 8888999888875531 11 1100111222 244444333 34443
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHH------HHHHhcCC
Q 003918 623 VKPLYLQYAKLEEDYGLAKRAMKVY------DQATKAVP 655 (786)
Q Consensus 623 ~~~~~~~~a~~~~~~g~~~~A~~~~------~~~l~~~p 655 (786)
++.+....++|.....++++|..++ +.+++++.
T Consensus 1079 Dp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~ 1117 (1416)
T KOG3617|consen 1079 DPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCK 1117 (1416)
T ss_pred CHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5788899999999999999988765 45555544
No 130
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.92 E-value=1.5e-08 Score=96.88 Aligned_cols=116 Identities=13% Similarity=0.107 Sum_probs=97.8
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChh
Q 003918 427 VAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEP 506 (786)
Q Consensus 427 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 506 (786)
..-|.-.++.++|.+|+..|.+|+.++|.++ .+|...+..+.+.|.++.|++-.+.++.++|
T Consensus 85 K~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nA----VyycNRAAAy~~Lg~~~~AVkDce~Al~iDp-------------- 146 (304)
T KOG0553|consen 85 KNEGNKLMKNKDYQEAVDKYTEAIELDPTNA----VYYCNRAAAYSKLGEYEDAVKDCESALSIDP-------------- 146 (304)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCCcc----hHHHHHHHHHHHhcchHHHHHHHHHHHhcCh--------------
Confidence 3445566778889999999999999999987 8888888899999999999999999999999
Q ss_pred HHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHH
Q 003918 507 VQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFE 566 (786)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~ 566 (786)
.....|..++.++..+|++.+|+..|+++|+++|+++..+.++.....+.+...
T Consensus 147 ------~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 147 ------HYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ------HHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 778889999999999999999999999999999999887777776666655444
No 131
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.91 E-value=1.7e-06 Score=92.75 Aligned_cols=298 Identities=17% Similarity=0.208 Sum_probs=189.7
Q ss_pred CCCCHHHHHHHHHhhcCCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhH
Q 003918 381 NPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHL 460 (786)
Q Consensus 381 ~p~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 460 (786)
+|.+.++-.....+.-|..++|..+|.++-+ +-.+-++|...|.+++|.++-+.=-.+ .+
T Consensus 798 ~~~e~eakvAvLAieLgMlEeA~~lYr~ckR--------------~DLlNKlyQs~g~w~eA~eiAE~~DRi------HL 857 (1416)
T KOG3617|consen 798 NGEEDEAKVAVLAIELGMLEEALILYRQCKR--------------YDLLNKLYQSQGMWSEAFEIAETKDRI------HL 857 (1416)
T ss_pred CCcchhhHHHHHHHHHhhHHHHHHHHHHHHH--------------HHHHHHHHHhcccHHHHHHHHhhccce------eh
Confidence 4443333333333444888899999998642 123445688889999998886643222 23
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 003918 461 ASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYER 540 (786)
Q Consensus 461 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 540 (786)
..-|+.|+..+...++.+.|+++|+++-. + .-+ +...+.++..+++.|-+
T Consensus 858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~--h---------------------afe-------v~rmL~e~p~~~e~Yv~ 907 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEARRDIEAALEYYEKAGV--H---------------------AFE-------VFRMLKEYPKQIEQYVR 907 (1416)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHhcCC--h---------------------HHH-------HHHHHHhChHHHHHHHH
Confidence 36788899999999999999999998631 1 001 11112233444444433
Q ss_pred HHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCc
Q 003918 541 ILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPA 620 (786)
Q Consensus 541 al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 620 (786)
-. .++.+|.=+|.+....|+.+.|+..|..|-.. +...... +-+|+.++|-.+-+.. +
T Consensus 908 ~~----~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~----------fs~VrI~---C~qGk~~kAa~iA~es-----g 965 (1416)
T KOG3617|consen 908 RK----RDESLYSWWGQYLESVGEMDAALSFYSSAKDY----------FSMVRIK---CIQGKTDKAARIAEES-----G 965 (1416)
T ss_pred hc----cchHHHHHHHHHHhcccchHHHHHHHHHhhhh----------hhheeeE---eeccCchHHHHHHHhc-----c
Confidence 32 46788888999999999999999999988663 2222222 2358899988776543 3
Q ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHHH------HhcCCCCchh-hHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCC
Q 003918 621 DAVKPLYLQYAKLEEDYGLAKRAMKVYDQA------TKAVPNHEKL-GMYEIYIARAAEIFGVPKTREIYEQAIESGLPD 693 (786)
Q Consensus 621 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~------l~~~p~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~ 693 (786)
+....+.+|..|...|+..+|+..|-++ ++++..+.-- .+|...+ .....+.-.|-++|+. .|.
T Consensus 966 --d~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal--~s~~~d~v~aArYyEe-----~g~ 1036 (1416)
T KOG3617|consen 966 --DKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLAL--MSGGSDLVSAARYYEE-----LGG 1036 (1416)
T ss_pred --cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh--hcCchhHHHHHHHHHH-----cch
Confidence 4567889999999999999999888654 4444433211 1111111 1122233445555555 232
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHH---------HHHHHccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 003918 694 KDVKAMCLKYAELEKSLGEIDRARGI---------YVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSA 764 (786)
Q Consensus 694 ~~~~~~~~~~~~~~~~~g~~~~A~~~---------~~~al~~~~p~~~~~~~~~~~~~~~~~G~~~~a~~~~~~~~~~~~ 764 (786)
+ .-.-..+|.+.|.+.+|+++ ++-..+..+|++++.+.+.-.+|.....++++|..++-..|....
T Consensus 1037 ~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~ 1111 (1416)
T KOG3617|consen 1037 Y-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSG 1111 (1416)
T ss_pred h-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 1 11223456677777777653 222222247777899999999999999999999999977666543
No 132
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=6.4e-08 Score=93.50 Aligned_cols=125 Identities=15% Similarity=0.109 Sum_probs=112.2
Q ss_pred ChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHH
Q 003918 530 NLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARE 609 (786)
Q Consensus 530 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~ 609 (786)
..+....-++.-+..+|+|++-|..+|.+|..+|++..|...|.+++++ .|+++..+..|+..++..-+.....+++.
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ 214 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARA 214 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 3556666778889999999999999999999999999999999999998 79999999999988876645555689999
Q ss_pred HHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 003918 610 LFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHE 658 (786)
Q Consensus 610 ~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~ 658 (786)
+|.+++..+|. ++.....+|.-++.+|++.+|...++.+++..|.+.
T Consensus 215 ll~~al~~D~~--~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 215 LLRQALALDPA--NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHhcCCc--cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 99999999999 678888899999999999999999999999999763
No 133
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.87 E-value=1.5e-08 Score=96.79 Aligned_cols=107 Identities=13% Similarity=0.140 Sum_probs=93.2
Q ss_pred HHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcc
Q 003918 467 WAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRI 546 (786)
Q Consensus 467 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p 546 (786)
=+.-+.+.++|.+|+..|.+||.+.| +++.+|...+-+|.++|.++.|++-.++++.++|
T Consensus 87 eGN~~m~~~~Y~eAv~kY~~AI~l~P--------------------~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp 146 (304)
T KOG0553|consen 87 EGNKLMKNKDYQEAVDKYTEAIELDP--------------------TNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP 146 (304)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcCC--------------------CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh
Confidence 34455678899999999999999999 7888899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Q 003918 547 ATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFV 596 (786)
Q Consensus 547 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~ 596 (786)
.+..+|..+|..|..+|++++|++.|++++++ +|++...|.. +....
T Consensus 147 ~yskay~RLG~A~~~~gk~~~A~~aykKaLel--dP~Ne~~K~n-L~~Ae 193 (304)
T KOG0553|consen 147 HYSKAYGRLGLAYLALGKYEEAIEAYKKALEL--DPDNESYKSN-LKIAE 193 (304)
T ss_pred HHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc--CCCcHHHHHH-HHHHH
Confidence 99999999999999999999999999999998 7988877766 44443
No 134
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.87 E-value=4.6e-08 Score=85.78 Aligned_cols=104 Identities=13% Similarity=0.066 Sum_probs=95.8
Q ss_pred CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhh
Q 003918 421 KPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVA 500 (786)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 500 (786)
+.....+.+|..+...|++++|.++|+-+...+|.+. ..|+.++.++...|++.+|+..|.+++.+.|
T Consensus 33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~----~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-------- 100 (157)
T PRK15363 33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSF----DYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-------- 100 (157)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--------
Confidence 4566778899999999999999999999999999998 9999999999999999999999999999999
Q ss_pred ccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCC
Q 003918 501 ADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIAT 548 (786)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 548 (786)
+++..+...+.++...|+.+.|++.|+.++......
T Consensus 101 ------------ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~ 136 (157)
T PRK15363 101 ------------DAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEV 136 (157)
T ss_pred ------------CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccC
Confidence 889999999999999999999999999999986433
No 135
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=1e-07 Score=92.11 Aligned_cols=121 Identities=18% Similarity=0.176 Sum_probs=83.9
Q ss_pred hhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCC---cH
Q 003918 42 FKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQK---FI 118 (786)
Q Consensus 42 ~~~~~~~~~~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~w~~~~~~~~~~~---~~ 118 (786)
.+......+..|+.+|+|++.|..++...+.. +++..|...|.+|+++.|+|+++|..|++.++.+. .-
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~--------~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~t 209 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMAL--------GRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMT 209 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh--------cchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCccc
Confidence 45566666777777777777777777777765 77777777777777777777777777777776532 24
Q ss_pred HHHHHHHHHHHhhCCCCcchhhHHHHHHHHHhcCCChHHHHHHHHHHHccCCCCH
Q 003918 119 TKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHI 173 (786)
Q Consensus 119 ~~A~~~~~~al~~~p~~~~~~~w~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 173 (786)
.++..+|++++..+|.+ ...-..++.-+..+|++ .+|...++.+++..|.+.
T Consensus 210 a~a~~ll~~al~~D~~~--iral~lLA~~afe~g~~-~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 210 AKARALLRQALALDPAN--IRALSLLAFAAFEQGDY-AEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHHHHhcCCcc--HHHHHHHHHHHHHcccH-HHHHHHHHHHHhcCCCCC
Confidence 56777777777777764 34444445455566777 777777777777766554
No 136
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.81 E-value=8.7e-07 Score=89.17 Aligned_cols=257 Identities=14% Similarity=0.052 Sum_probs=165.6
Q ss_pred HHhhcCCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHH
Q 003918 392 VKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEME 471 (786)
Q Consensus 392 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~ 471 (786)
-.++.|++..++.-+. +...++ ........-.++.+..+|+++.++.-.... ..|.- .....++.++
T Consensus 10 n~fy~G~Y~~~i~e~~--~~~~~~----~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~--~~~~l-----~av~~la~y~ 76 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS--LKSFSP----ENKLERDFYQYRSYIALGQYDSVLSEIKKS--SSPEL-----QAVRLLAEYL 76 (290)
T ss_dssp HHHCTT-HHHHCHHHH--CHTSTC----HHHHHHHHHHHHHHHHTT-HHHHHHHS-TT--SSCCC-----HHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHhh--ccCCCc----hhHHHHHHHHHHHHHHcCChhHHHHHhccC--CChhH-----HHHHHHHHHH
Confidence 3455688888876665 223332 123455566677888888877655433221 12222 5556677776
Q ss_pred HhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHH
Q 003918 472 LRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQI 551 (786)
Q Consensus 472 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 551 (786)
...++.+.++.-++..+...... .++-+....+.++...|+++.|++++.+. .+.+.
T Consensus 77 ~~~~~~e~~l~~l~~~~~~~~~~------------------~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~ 133 (290)
T PF04733_consen 77 SSPSDKESALEELKELLADQAGE------------------SNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLEL 133 (290)
T ss_dssp CTSTTHHCHHHHHHHCCCTS---------------------CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHH
T ss_pred hCccchHHHHHHHHHHHHhcccc------------------ccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccH
Confidence 66566777777776665443300 13333444456666789999888888764 56777
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH-HHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHH
Q 003918 552 IINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFV-KRYGKTKLERARELFENAVETAPADAVKPLYLQY 630 (786)
Q Consensus 552 ~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 630 (786)
......++...|+++.|.+.++++.+. ++++.-.- ++.... ...+..++.+|.-+|+...+..|. ++.+....
T Consensus 134 ~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~~l~q--La~awv~l~~g~e~~~~A~y~f~El~~~~~~--t~~~lng~ 207 (290)
T PF04733_consen 134 LALAVQILLKMNRPDLAEKELKNMQQI--DEDSILTQ--LAEAWVNLATGGEKYQDAFYIFEELSDKFGS--TPKLLNGL 207 (290)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCHHHHH--HHHHHHHHHHTTTCCCHHHHHHHHHHCCS----SHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHH--HHHHHHHHHhCchhHHHHHHHHHHHHhccCC--CHHHHHHH
Confidence 777888999999999999999998876 44443211 121111 112556799999999998888776 67888899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcCh-hHHHHHHHHHHHhcCCC
Q 003918 631 AKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGV-PKTREIYEQAIESGLPD 693 (786)
Q Consensus 631 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~-~~A~~~~~~al~~~~p~ 693 (786)
+.++...|++++|.++++.++..+|.+++.... .+.+....|+. +.+.+++.+.... .|+
T Consensus 208 A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaN--liv~~~~~gk~~~~~~~~l~qL~~~-~p~ 268 (290)
T PF04733_consen 208 AVCHLQLGHYEEAEELLEEALEKDPNDPDTLAN--LIVCSLHLGKPTEAAERYLSQLKQS-NPN 268 (290)
T ss_dssp HHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHH--HHHHHHHTT-TCHHHHHHHHHCHHH-TTT
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHH--HHHHHHHhCCChhHHHHHHHHHHHh-CCC
Confidence 999999999999999999999999986654433 44444456776 5678888887777 787
No 137
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.77 E-value=1.2e-06 Score=89.56 Aligned_cols=130 Identities=10% Similarity=0.056 Sum_probs=84.9
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHH
Q 003918 514 SLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLS 593 (786)
Q Consensus 514 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~ 593 (786)
....++..+..+...|+++.|+..+...+...|+|+-.+...+.++.+.|+..+|.+.+++++.. +|..+.+|..|+.
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~ 382 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQ 382 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHH
Confidence 34555555555566667777777777766667777766667777777777777777777777765 5666666666665
Q ss_pred HHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003918 594 KFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQA 650 (786)
Q Consensus 594 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~ 650 (786)
.+. ..|++.+|+.++++.+..+|+ ++..|..++..+..+|+..++...+..+
T Consensus 383 all---~~g~~~eai~~L~~~~~~~p~--dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 383 ALL---KGGKPQEAIRILNRYLFNDPE--DPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHH---hcCChHHHHHHHHHHhhcCCC--CchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 554 346666777777777766666 4566777777776666666665554443
No 138
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.76 E-value=1.7e-05 Score=95.61 Aligned_cols=324 Identities=11% Similarity=0.045 Sum_probs=213.2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhccCC-----ChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhh
Q 003918 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYK-----TVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRR 498 (786)
Q Consensus 424 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 498 (786)
.+....+..+...|++++|...+.++....+. .+.....+....+.++...|++++|...+++++...+...
T Consensus 410 ~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~--- 486 (903)
T PRK04841 410 RLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTW--- 486 (903)
T ss_pred chHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc---
Confidence 34456666777889999999999988764322 1111223444456677789999999999999987543100
Q ss_pred hhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccC----C--HHHHHHHHHHHHHcccHHHHHHHH
Q 003918 499 VAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIA----T--PQIIINYALLLEEHKYFEDAFRVY 572 (786)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~--~~~~~~~~~~~~~~g~~~~A~~~~ 572 (786)
.......+..++.++...|++++|...+++++..... . ..++..++.++...|+++.|...+
T Consensus 487 ------------~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~ 554 (903)
T PRK04841 487 ------------YYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQ 554 (903)
T ss_pred ------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 0001234455677778899999999999999976332 1 235567788999999999999999
Q ss_pred HHHHhhcCC---CCh---HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCc---cCcHHHHHHHHHHHHHcCCHHHH
Q 003918 573 ERGVKIFKY---PHV---KDIWVTYLSKFVKRYGKTKLERARELFENAVETAPA---DAVKPLYLQYAKLEEDYGLAKRA 643 (786)
Q Consensus 573 ~~al~~~~~---p~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~a~~~~~~g~~~~A 643 (786)
++++..... +.. ..++...+.... ..|++++|...+++++..... ......+..++.+....|+++.|
T Consensus 555 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~---~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A 631 (903)
T PRK04841 555 EKAFQLIEEQHLEQLPMHEFLLRIRAQLLW---EWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNA 631 (903)
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHH---HhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHH
Confidence 999886321 111 111222122222 458999999999999886332 11244555678888899999999
Q ss_pred HHHHHHHHhcCCCCchhhHHHH-----HHHHHHHhcChhHHHHHHHHHHHhcCCChh--HHHHHHHHHHHHHHcCChHHH
Q 003918 644 MKVYDQATKAVPNHEKLGMYEI-----YIARAAEIFGVPKTREIYEQAIESGLPDKD--VKAMCLKYAELEKSLGEIDRA 716 (786)
Q Consensus 644 ~~~~~~~l~~~p~~~~~~~~~~-----~~~~~~~~~~~~~A~~~~~~al~~~~p~~~--~~~~~~~~~~~~~~~g~~~~A 716 (786)
...+.++....+.......+.. ........|+.+.|...+...... .+... ....+..++.++...|+.++|
T Consensus 632 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A 710 (903)
T PRK04841 632 RRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQILLGQFDEA 710 (903)
T ss_pred HHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHHHHcCCHHHH
Confidence 9999999775443211111111 112223468888998887776543 22111 112246678889999999999
Q ss_pred HHHHHHHHccCCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh
Q 003918 717 RGIYVFASQFADPR----SDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASY 766 (786)
Q Consensus 717 ~~~~~~al~~~~p~----~~~~~~~~~~~~~~~~G~~~~a~~~~~~~~~~~~~~ 766 (786)
...+++++...... ........++..+...|+.++|...+...-.+....
T Consensus 711 ~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 711 EIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 99999998752111 013456667788999999999999997555544433
No 139
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.72 E-value=2.3e-07 Score=97.02 Aligned_cols=112 Identities=14% Similarity=0.088 Sum_probs=91.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChh
Q 003918 427 VAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEP 506 (786)
Q Consensus 427 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 506 (786)
...|......|++++|+..|++++..+|++. .+|..++.++...|++++|+..+++++.+.|
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~----~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-------------- 67 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNA----ELYADRAQANIKLGNFTEAVADANKAIELDP-------------- 67 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--------------
Confidence 4456667778888888888888888888887 7888888888888888888888888888888
Q ss_pred HHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHc
Q 003918 507 VQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEH 562 (786)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 562 (786)
.++.+|..+|.++..+|+++.|+..|+++++++|+++.+...++.+....
T Consensus 68 ------~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 68 ------SLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred ------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 67788888888888888888888888888888888888777666664443
No 140
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=98.66 E-value=3.4e-08 Score=93.77 Aligned_cols=131 Identities=20% Similarity=0.246 Sum_probs=112.3
Q ss_pred CCCcchHhHHHHhhCCCChHhHHHHHHHHH---------------c--------CChhhHHHHHHHHHHhCCCCHHHHHH
Q 003918 9 PSEDDLLYEEELLRNPFSLKLWWRYLVAKR---------------E--------APFKKRFVIYERALKALPGSYKLWHA 65 (786)
Q Consensus 9 ~~~~~~~~~~~l~~~p~~~~~w~~~~~~~~---------------~--------~~~~~~~~~~~~al~~~P~~~~~w~~ 65 (786)
|.+..-.||..|+..-...+.++.|+.++. . ...++....|-|+...+|+|+.+|..
T Consensus 33 IvktRr~fE~rL~rr~~klnDf~~YI~yE~nleklRaKR~Kr~~v~~K~s~sD~sipqk~~f~~~R~tnkff~D~k~w~~ 112 (435)
T COG5191 33 IVKTRRKFELRLQRREKKLNDFMRYIKYECNLEKLRAKRVKRKKVGKKASFSDMSIPQKKIFELYRSTNKFFNDPKIWSQ 112 (435)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHhcccccchhccccceeeEeeehhhhcCCCCcHHHHH
Confidence 345566788889888889999999988653 0 12246666788999999999999999
Q ss_pred HHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHc-CCcHHHHHHHHHHHHhhCCCCcchhhHHHH
Q 003918 66 YLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTS-QKFITKARRTFDRALCALPVTQHDRIWEIY 144 (786)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~w~~~~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~w~~~ 144 (786)
|+.+..+. +.+.+.-.+|-.+++.+|.|+++|+--+.++.. .++++.++.+|.++|+.+|.+ +.+|..|
T Consensus 113 y~~Y~~k~--------k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~--p~iw~ey 182 (435)
T COG5191 113 YAAYVIKK--------KMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS--PRIWIEY 182 (435)
T ss_pred HHHHHHHH--------HHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC--chHHHHH
Confidence 99998876 889999999999999999999999988888775 689999999999999999975 8999999
Q ss_pred HHHHH
Q 003918 145 LRFVE 149 (786)
Q Consensus 145 ~~~~~ 149 (786)
..++.
T Consensus 183 fr~El 187 (435)
T COG5191 183 FRMEL 187 (435)
T ss_pred HHHHH
Confidence 98865
No 141
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.66 E-value=0.00032 Score=69.73 Aligned_cols=295 Identities=19% Similarity=0.149 Sum_probs=200.9
Q ss_pred HHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhh
Q 003918 433 YETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLH 512 (786)
Q Consensus 433 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 512 (786)
-.-.|+-..|++.-.++-+.-..+.+. .+.+.-++.-.-.|+++.|++-|+.++.-|...+
T Consensus 94 AagAGda~lARkmt~~~~~llssDqep--LIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRl----------------- 154 (531)
T COG3898 94 AAGAGDASLARKMTARASKLLSSDQEP--LIHLLEAQAALLEGDYEDARKKFEAMLDDPETRL----------------- 154 (531)
T ss_pred hhccCchHHHHHHHHHHHhhhhccchH--HHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHH-----------------
Confidence 335677788888877766433333321 3444445555667889999988888887665210
Q ss_pred hcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcC-CCChH---HHH
Q 003918 513 KSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFK-YPHVK---DIW 588 (786)
Q Consensus 513 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~-~p~~~---~~~ 588 (786)
..+-..|. --...|..+.|+..-+++-..-|.-+-+|..........|+++.|+++.+....... .|+.. .+-
T Consensus 155 --lGLRgLyl-eAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAv 231 (531)
T COG3898 155 --LGLRGLYL-EAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAV 231 (531)
T ss_pred --HhHHHHHH-HHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHH
Confidence 01111111 123578888888888888888888887777777777888999999988875554310 12211 111
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHH
Q 003918 589 VTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIA 668 (786)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~ 668 (786)
+. .....+. -..+...|+..-..++++.|+ -...-..-+..+.+.|++-++-.+++.+.+..| ...++..|+.
T Consensus 232 LL-tAkA~s~-ldadp~~Ar~~A~~a~KL~pd--lvPaav~AAralf~d~~~rKg~~ilE~aWK~eP---HP~ia~lY~~ 304 (531)
T COG3898 232 LL-TAKAMSL-LDADPASARDDALEANKLAPD--LVPAAVVAARALFRDGNLRKGSKILETAWKAEP---HPDIALLYVR 304 (531)
T ss_pred HH-HHHHHHH-hcCChHHHHHHHHHHhhcCCc--cchHHHHHHHHHHhccchhhhhhHHHHHHhcCC---ChHHHHHHHH
Confidence 11 1112222 234688899999999999998 556667778889999999999999999999887 3445666665
Q ss_pred HHHHhcChhHHHHHHHHHH-HhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHc-
Q 003918 669 RAAEIFGVPKTREIYEQAI-ESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNH- 746 (786)
Q Consensus 669 ~~~~~~~~~~A~~~~~~al-~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~- 746 (786)
.+.|+....|--=-+.+ .+ .|+ .....+..++.-...|++..|+.--+.+... .|. ..++..+.+.+...
T Consensus 305 --ar~gdta~dRlkRa~~L~sl-k~n--naes~~~va~aAlda~e~~~ARa~Aeaa~r~-~pr--es~~lLlAdIeeAet 376 (531)
T COG3898 305 --ARSGDTALDRLKRAKKLESL-KPN--NAESSLAVAEAALDAGEFSAARAKAEAAARE-APR--ESAYLLLADIEEAET 376 (531)
T ss_pred --hcCCCcHHHHHHHHHHHHhc-Ccc--chHHHHHHHHHHHhccchHHHHHHHHHHhhh-Cch--hhHHHHHHHHHhhcc
Confidence 36666555443222223 33 566 3557788888888899999999999888886 676 77888899986665
Q ss_pred CCHHHHHHHHHHHHHHHhhh
Q 003918 747 GNEDTFREMLRIKRSVSASY 766 (786)
Q Consensus 747 G~~~~a~~~~~~~~~~~~~~ 766 (786)
||-.++++.+ .+.++...
T Consensus 377 GDqg~vR~wl--Aqav~APr 394 (531)
T COG3898 377 GDQGKVRQWL--AQAVKAPR 394 (531)
T ss_pred CchHHHHHHH--HHHhcCCC
Confidence 9999999998 67766544
No 142
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.65 E-value=1.3e-06 Score=87.96 Aligned_cols=247 Identities=13% Similarity=0.048 Sum_probs=160.9
Q ss_pred hccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHH
Q 003918 473 RHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQII 552 (786)
Q Consensus 473 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 552 (786)
-.|++..++.-.+ .....+. ..........+.+..+|+++.++.-.. ...+....+.
T Consensus 13 y~G~Y~~~i~e~~-~~~~~~~-------------------~~~e~~~~~~Rs~iAlg~~~~vl~ei~---~~~~~~l~av 69 (290)
T PF04733_consen 13 YLGNYQQCINEAS-LKSFSPE-------------------NKLERDFYQYRSYIALGQYDSVLSEIK---KSSSPELQAV 69 (290)
T ss_dssp CTT-HHHHCHHHH-CHTSTCH-------------------HHHHHHHHHHHHHHHTT-HHHHHHHS----TTSSCCCHHH
T ss_pred HhhhHHHHHHHhh-ccCCCch-------------------hHHHHHHHHHHHHHHcCChhHHHHHhc---cCCChhHHHH
Confidence 3688888886665 2223331 223334444666778888765543332 2223334556
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHH
Q 003918 553 INYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAK 632 (786)
Q Consensus 553 ~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~ 632 (786)
..++.++...++-+.++..++..+.....+.++ ++...+..++ ...|++++|.+++++. + +.+.......
T Consensus 70 ~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~-~~~~~~A~i~--~~~~~~~~AL~~l~~~-----~--~lE~~al~Vq 139 (290)
T PF04733_consen 70 RLLAEYLSSPSDKESALEELKELLADQAGESNE-IVQLLAATIL--FHEGDYEEALKLLHKG-----G--SLELLALAVQ 139 (290)
T ss_dssp HHHHHHHCTSTTHHCHHHHHHHCCCTS---CHH-HHHHHHHHHH--CCCCHHHHHHCCCTTT-----T--CHHHHHHHHH
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHhccccccH-HHHHHHHHHH--HHcCCHHHHHHHHHcc-----C--cccHHHHHHH
Confidence 666666655456666766666555431112232 3332222222 2568888888887654 2 4667777888
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCC
Q 003918 633 LEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGE 712 (786)
Q Consensus 633 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~ 712 (786)
++.+.++++.|.+.++.+-+.+.++.-..+..+|+........+.+|.-+|+..... .|. .+.+...++.++..+|+
T Consensus 140 i~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~--t~~~lng~A~~~l~~~~ 216 (290)
T PF04733_consen 140 ILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGS--TPKLLNGLAVCHLQLGH 216 (290)
T ss_dssp HHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S----SHHHHHHHHHHHHHCT-
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCC--CHHHHHHHHHHHHHhCC
Confidence 899999999999999999888776666677888888755555699999999997666 555 46688888999999999
Q ss_pred hHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHH
Q 003918 713 IDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNE-DTFREMLR 757 (786)
Q Consensus 713 ~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~G~~-~~a~~~~~ 757 (786)
+++|.+++..|+.. +|. +++....++.+....|+. +.+.+.+.
T Consensus 217 ~~eAe~~L~~al~~-~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 217 YEEAEELLEEALEK-DPN-DPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp HHHHHHHHHHHCCC--CC-HHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-ccC-CHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 99999999999986 787 688888888888888887 55666664
No 143
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.65 E-value=0.0013 Score=70.49 Aligned_cols=270 Identities=16% Similarity=0.179 Sum_probs=148.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccC
Q 003918 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADG 503 (786)
Q Consensus 424 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 503 (786)
..|-..++-|...|+|+.|...|.++ .+......++-+.|+++.|.++-.+...-..
T Consensus 766 ~yy~~iadhyan~~dfe~ae~lf~e~------------~~~~dai~my~k~~kw~da~kla~e~~~~e~----------- 822 (1636)
T KOG3616|consen 766 GYYGEIADHYANKGDFEIAEELFTEA------------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEA----------- 822 (1636)
T ss_pred ccchHHHHHhccchhHHHHHHHHHhc------------chhHHHHHHHhccccHHHHHHHHHHhcCchh-----------
Confidence 45566677788888888888888765 2334445566778888888776665543222
Q ss_pred ChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCC
Q 003918 504 NEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPH 583 (786)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~ 583 (786)
...+|..-+.-....|++.+|.++|-..-. |+ .-..+|-+.|..+..+.+.++-- |+
T Consensus 823 ----------t~~~yiakaedldehgkf~eaeqlyiti~~--p~------~aiqmydk~~~~ddmirlv~k~h-----~d 879 (1636)
T KOG3616|consen 823 ----------TISLYIAKAEDLDEHGKFAEAEQLYITIGE--PD------KAIQMYDKHGLDDDMIRLVEKHH-----GD 879 (1636)
T ss_pred ----------HHHHHHHhHHhHHhhcchhhhhheeEEccC--ch------HHHHHHHhhCcchHHHHHHHHhC-----hh
Confidence 335555556666678888888877743321 21 12345666777777666655432 32
Q ss_pred h-HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHH------------H
Q 003918 584 V-KDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQ------------A 650 (786)
Q Consensus 584 ~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~------------~ 650 (786)
. .+....++..+. ..|++..|..-|-++-+- ..-..+|...+-.+.|..+-+. .
T Consensus 880 ~l~dt~~~f~~e~e---~~g~lkaae~~flea~d~----------kaavnmyk~s~lw~dayriaktegg~n~~k~v~fl 946 (1636)
T KOG3616|consen 880 HLHDTHKHFAKELE---AEGDLKAAEEHFLEAGDF----------KAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFL 946 (1636)
T ss_pred hhhHHHHHHHHHHH---hccChhHHHHHHHhhhhH----------HHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHH
Confidence 2 223334444444 347888888877766332 2223333333333333332211 0
Q ss_pred H-hcCCCCchhh------HHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003918 651 T-KAVPNHEKLG------MYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFA 723 (786)
Q Consensus 651 l-~~~p~~~~~~------~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 723 (786)
. +....+.-+. +...-+++....+.++-|-++-+-+.+.. .+.+.+.++.++..-|.++.|.+.|-.|
T Consensus 947 waksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k-----~~~vhlk~a~~ledegk~edaskhyvea 1021 (1636)
T KOG3616|consen 947 WAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK-----MGEVHLKLAMFLEDEGKFEDASKHYVEA 1021 (1636)
T ss_pred HHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc-----CccchhHHhhhhhhccchhhhhHhhHHH
Confidence 0 0000111111 12222333344556666666555555432 2458899999999999999999999999
Q ss_pred HccCCCC--CCHHHHHHHHHHHHHcC-CHHHHHHHHH
Q 003918 724 SQFADPR--SDTEFWNRWHEFEVNHG-NEDTFREMLR 757 (786)
Q Consensus 724 l~~~~p~--~~~~~~~~~~~~~~~~G-~~~~a~~~~~ 757 (786)
++...-+ |...+-..+-.-..+.| ..++|.+++-
T Consensus 1022 iklntynitwcqavpsrfd~e~ir~gnkpe~av~mfi 1058 (1636)
T KOG3616|consen 1022 IKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFI 1058 (1636)
T ss_pred hhcccccchhhhcccchhhHHHHHcCCChHHHHHHhh
Confidence 9862111 11111111112234456 4677776663
No 144
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.63 E-value=5.7e-07 Score=94.10 Aligned_cols=104 Identities=14% Similarity=0.152 Sum_probs=92.5
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 003918 465 CEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDL 544 (786)
Q Consensus 465 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 544 (786)
..-|......|+++.|+..|++++...| ++..+|..++.++...|++++|+..+++++.+
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P--------------------~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l 65 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLDP--------------------NNAELYADRAQANIKLGNFTEAVADANKAIEL 65 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC--------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4446666788999999999999999999 78889999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHH
Q 003918 545 RIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVT 590 (786)
Q Consensus 545 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~ 590 (786)
+|+++.+|+.+|.++...|++++|+..|++++++ +|.+..+...
T Consensus 66 ~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l--~P~~~~~~~~ 109 (356)
T PLN03088 66 DPSLAKAYLRKGTACMKLEEYQTAKAALEKGASL--APGDSRFTKL 109 (356)
T ss_pred CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 9999999999999999999999999999999997 6887776554
No 145
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=0.00077 Score=64.56 Aligned_cols=165 Identities=16% Similarity=0.121 Sum_probs=93.3
Q ss_pred CCHHHHHHHHHhh--cCCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHh----ccCCC
Q 003918 383 HNVEQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQ----VNYKT 456 (786)
Q Consensus 383 ~~~~~~~~~~~~~--~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----~~p~~ 456 (786)
+..+.....+++. +|+++.|.+-|..+++ +.. -.+.+-+.+|..+.+.++++.|.+....++. ..|.-
T Consensus 142 n~Ad~~in~gCllykegqyEaAvqkFqaAlq-vsG-----yqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPEl 215 (459)
T KOG4340|consen 142 NEADGQINLGCLLYKEGQYEAAVQKFQAALQ-VSG-----YQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPEL 215 (459)
T ss_pred CccchhccchheeeccccHHHHHHHHHHHHh-hcC-----CCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCcc
Confidence 3444555566655 3788888888888884 433 3455667777788888888888776555443 33431
Q ss_pred h----------------h-----hHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcH
Q 003918 457 V----------------D-----HLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSL 515 (786)
Q Consensus 457 ~----------------~-----~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (786)
. . .+...+...+.++.+.|+++.|++.+. ..|| |...+ -++
T Consensus 216 gIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt---DmPP-----RaE~e----------lDP 277 (459)
T KOG4340|consen 216 GIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT---DMPP-----RAEEE----------LDP 277 (459)
T ss_pred CccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh---cCCC-----ccccc----------CCc
Confidence 0 0 012344445556677777777765443 3444 11000 111
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHH
Q 003918 516 RLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVY 572 (786)
Q Consensus 516 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~ 572 (786)
.....++ +....+++-....-+.-.+.++|-.++.+-++..+|.++.-++-|-.++
T Consensus 278 vTLHN~A-l~n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvL 333 (459)
T KOG4340|consen 278 VTLHNQA-LMNMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVL 333 (459)
T ss_pred hhhhHHH-HhcccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHH
Confidence 1111111 1122345555555566667777766667777777777777666665544
No 146
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.58 E-value=1.1e-06 Score=76.56 Aligned_cols=109 Identities=13% Similarity=0.041 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccC
Q 003918 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADG 503 (786)
Q Consensus 424 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 503 (786)
..++..|..+...|++++|.+.|++++..+|+++.. ..++..++.++.+.|+++.|...|++++...|..
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--------- 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYA-PNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS--------- 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcccc-HHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC---------
Confidence 345666666666677777777777666666654211 1455556666666666666666666666554410
Q ss_pred ChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHH
Q 003918 504 NEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQ 550 (786)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 550 (786)
...+.++..++.++...|++++|...|++++...|+++.
T Consensus 73 --------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 73 --------PKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred --------CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 012345555666666666666666666666666666544
No 147
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.57 E-value=1.9e-06 Score=93.88 Aligned_cols=159 Identities=12% Similarity=0.111 Sum_probs=124.3
Q ss_pred cchHhHHHHhhCCCChHhHHHHHHHHH------cCChhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccCCCCCchhHH
Q 003918 12 DDLLYEEELLRNPFSLKLWWRYLVAKR------EAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYE 85 (786)
Q Consensus 12 ~~~~~~~~l~~~p~~~~~w~~~~~~~~------~~~~~~~~~~~~~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 85 (786)
....-++....-|.+.++|-.+++... .....+++.+|++|++.+|+....|-.++........-......+..
T Consensus 322 ~~~e~~~~~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~ 401 (517)
T PRK10153 322 PERMQERLQQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLA 401 (517)
T ss_pred cHHHHHHHhccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHH
Confidence 334445556677899999999988533 34477999999999999999998887755432221110011124567
Q ss_pred HHHHHHHHHHHh--cCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHhcCCChHHHHHHHH
Q 003918 86 TLNNTFERALVT--MHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYR 163 (786)
Q Consensus 86 ~A~~~~~~al~~--~p~~~~~w~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~w~~~~~~~~~~~~~~~~A~~~~~ 163 (786)
.+....++++.. +|.++.++..++......|+++.|...+++|+..+|. ...|..++.++...|+. ++|...|+
T Consensus 402 ~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps---~~a~~~lG~~~~~~G~~-~eA~~~~~ 477 (517)
T PRK10153 402 ALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS---WLNYVLLGKVYELKGDN-RLAADAYS 477 (517)
T ss_pred HHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHcCCH-HHHHHHHH
Confidence 788888887774 7788888888888888899999999999999999994 46788889999999999 99999999
Q ss_pred HHHccCCCCHH
Q 003918 164 RYLKYDPSHIE 174 (786)
Q Consensus 164 ~~l~~~p~~~~ 174 (786)
+++.++|.++.
T Consensus 478 ~A~~L~P~~pt 488 (517)
T PRK10153 478 TAFNLRPGENT 488 (517)
T ss_pred HHHhcCCCCch
Confidence 99999999874
No 148
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.57 E-value=2.8e-07 Score=71.11 Aligned_cols=65 Identities=17% Similarity=0.309 Sum_probs=54.3
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcc-cHHHHHHHHHHHHhh
Q 003918 514 SLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHK-YFEDAFRVYERGVKI 578 (786)
Q Consensus 514 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~ 578 (786)
++..|..+|..+...|++++|+..|+++++.+|+++.+|.++|.++...| ++++|++.+++++++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 35678888888888888888888888888888888888888888888888 688888888888886
No 149
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.55 E-value=8.2e-06 Score=81.00 Aligned_cols=280 Identities=13% Similarity=0.081 Sum_probs=176.7
Q ss_pred HHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHH
Q 003918 431 KLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMK 510 (786)
Q Consensus 431 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 510 (786)
.-+++.|+....+..|+.+++.--++...++.+|..+++.+.-.++|++|.++-..=+.+.. ..+ .+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar-----~lg--------dk 91 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLAR-----LLG--------DK 91 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHH-----Hhc--------ch
Confidence 34567888889999999999888777777788888888888888888888876432221100 000 00
Q ss_pred hhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcc------CCHHHHHHHHHHHHHccc-------------HHHHHHH
Q 003918 511 LHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRI------ATPQIIINYALLLEEHKY-------------FEDAFRV 571 (786)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~~~~~~~~~g~-------------~~~A~~~ 571 (786)
......--.+++.....|.+++|+-+..+-+.+.- ....+++++|.+|...|+ .+++.+.
T Consensus 92 -lGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~a 170 (639)
T KOG1130|consen 92 -LGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSA 170 (639)
T ss_pred -hccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHH
Confidence 01122223456777778888888877777665421 124688899999988773 2455566
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHH-----H-----HhCCCChHHHHHHHHHHHhhCCc----cCcHHHHHHHHHHHHHc
Q 003918 572 YERGVKIFKYPHVKDIWVTYLSKFV-----K-----RYGKTKLERARELFENAVETAPA----DAVKPLYLQYAKLEEDY 637 (786)
Q Consensus 572 ~~~al~~~~~p~~~~~~~~~~~~~~-----~-----~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~~~a~~~~~~ 637 (786)
++.|++.+ -.+..+-....+.+. . ++-.|++++|+...+.-+.+... ......+.+++..+...
T Consensus 171 l~~Av~fy--~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl 248 (639)
T KOG1130|consen 171 LENAVKFY--MENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL 248 (639)
T ss_pred HHHHHHHH--HHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh
Confidence 66666653 222222222222111 0 01246889998887776665321 01234778889999999
Q ss_pred CCHHHHHHHHHHHHhcCC--CCchhhHHHHHH--HHHHHhcChhHHHHHHHHHHHhc---CCChhHHHHHHHHHHHHHHc
Q 003918 638 GLAKRAMKVYDQATKAVP--NHEKLGMYEIYI--ARAAEIFGVPKTREIYEQAIESG---LPDKDVKAMCLKYAELEKSL 710 (786)
Q Consensus 638 g~~~~A~~~~~~~l~~~p--~~~~~~~~~~~~--~~~~~~~~~~~A~~~~~~al~~~---~p~~~~~~~~~~~~~~~~~~ 710 (786)
|+++.|.+.|++.+...- .+..+....+|. ..+.-..++.+|+.++.+-+.+. ........+++.+|..+...
T Consensus 249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~al 328 (639)
T KOG1130|consen 249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNAL 328 (639)
T ss_pred cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 999999999998764322 122222222222 12223457899999999987650 01111356888899999999
Q ss_pred CChHHHHHHHHHHHcc
Q 003918 711 GEIDRARGIYVFASQF 726 (786)
Q Consensus 711 g~~~~A~~~~~~al~~ 726 (786)
|..++|....+..++.
T Consensus 329 g~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 329 GEHRKALYFAELHLRS 344 (639)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 9999999888777764
No 150
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.55 E-value=9.1e-07 Score=73.24 Aligned_cols=64 Identities=20% Similarity=0.306 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 003918 515 LRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKI 578 (786)
Q Consensus 515 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 578 (786)
..++..++.++...|++++|...|++++...|.++.++..++.++...|+++.|...+.+++..
T Consensus 34 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 34 ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 3444444444444555555555555555555555555555555555555555555555555443
No 151
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.53 E-value=1.2e-06 Score=72.38 Aligned_cols=99 Identities=22% Similarity=0.294 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Q 003918 517 LWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFV 596 (786)
Q Consensus 517 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~ 596 (786)
.|..++..+...|++++|...|+++++..|.++.++..+|.++...|++++|+..+++++.. .|.+...|...+..+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHHH
Confidence 35667888888999999999999999999999999999999999999999999999999997 5777777777665444
Q ss_pred HHhCCCChHHHHHHHHHHHhhCCc
Q 003918 597 KRYGKTKLERARELFENAVETAPA 620 (786)
Q Consensus 597 ~~~~~~~~~~A~~~~~~al~~~p~ 620 (786)
..|+++.|...+.++++..|.
T Consensus 80 ---~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 80 ---KLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred ---HHHhHHHHHHHHHHHHccCCC
Confidence 337899999999999998874
No 152
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.50 E-value=8.4e-07 Score=68.42 Aligned_cols=67 Identities=16% Similarity=0.117 Sum_probs=58.6
Q ss_pred CHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCC-cHHHHHHHHHHHHhhCC
Q 003918 59 SYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQK-FITKARRTFDRALCALP 133 (786)
Q Consensus 59 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~w~~~~~~~~~~~-~~~~A~~~~~~al~~~p 133 (786)
++..|...+...+.. |++++|+..|+++++.+|+++.+|..++..+...| ++.+|...|+++++.+|
T Consensus 2 ~a~~~~~~g~~~~~~--------~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQ--------GDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHT--------THHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 567888888888876 88999999999999999999999999999988888 78999999999998887
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.49 E-value=2.4e-06 Score=74.38 Aligned_cols=100 Identities=10% Similarity=0.121 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003918 462 SIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERI 541 (786)
Q Consensus 462 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 541 (786)
..++..+..+...|++++|...|.+++...|... .....+..++.++...|+++.|...|+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 65 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKST-----------------YAPNAHYWLGEAYYAQGKYADAAKAFLAV 65 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc-----------------ccHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 3445555555555666666666666555444000 11334455555555556666666666666
Q ss_pred HhhccCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 003918 542 LDLRIAT---PQIIINYALLLEEHKYFEDAFRVYERGVKI 578 (786)
Q Consensus 542 l~~~p~~---~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 578 (786)
+...|++ +.++..+|.++...|++++|+..+++++..
T Consensus 66 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 66 VKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 6555543 345555555555556666666666665554
No 154
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.49 E-value=7e-06 Score=89.51 Aligned_cols=145 Identities=15% Similarity=0.076 Sum_probs=106.8
Q ss_pred hcHHHHHHHHHHH--HHc---CChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcc--------cHHHHHHHHHHHHhhc
Q 003918 513 KSLRLWTFYVDLE--ESL---GNLESTRAVYERILDLRIATPQIIINYALLLEEHK--------YFEDAFRVYERGVKIF 579 (786)
Q Consensus 513 ~~~~~~~~~~~~~--~~~---g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g--------~~~~A~~~~~~al~~~ 579 (786)
.+..+|..+.... ... ++...|+.+|+++++.+|++..+|..++.++.... +...+.+...+++...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~ 414 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALP 414 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcc
Confidence 4556665554432 222 34789999999999999999999888877664431 2345666666766642
Q ss_pred CCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Q 003918 580 KYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEK 659 (786)
Q Consensus 580 ~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 659 (786)
.+|.++.++..++.... ..|++++|...|++++..+|. ...|..+|.++...|+.++|...|++++..+|..+.
T Consensus 415 ~~~~~~~~~~ala~~~~---~~g~~~~A~~~l~rAl~L~ps---~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 415 ELNVLPRIYEILAVQAL---VKGKTDEAYQAINKAIDLEMS---WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred cCcCChHHHHHHHHHHH---hcCCHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 35666666665432222 358999999999999999984 578999999999999999999999999999998775
Q ss_pred hhHH
Q 003918 660 LGMY 663 (786)
Q Consensus 660 ~~~~ 663 (786)
...+
T Consensus 489 ~~~~ 492 (517)
T PRK10153 489 LYWI 492 (517)
T ss_pred HHHH
Confidence 4433
No 155
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.49 E-value=2.5e-06 Score=88.57 Aligned_cols=126 Identities=14% Similarity=0.075 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCC
Q 003918 425 LWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGN 504 (786)
Q Consensus 425 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 504 (786)
+-..+..++...++++.|+.+|++..+.+| .++..++.++...++-.+|++++.+++...|
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~p-------ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p------------ 231 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDP-------EVAVLLARVYLLMNEEVEAIRLLNEALKENP------------ 231 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCC-------cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC------------
Confidence 334556667778899999999999998887 4556688888888999999999999999888
Q ss_pred hhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 003918 505 EPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVK 577 (786)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 577 (786)
.+..++...+.++...++++.|..+.+++++..|++...|..++.+|...|+++.|+..++.+-.
T Consensus 232 --------~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 232 --------QDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred --------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 67888889999999999999999999999999999999999999999999999999988875443
No 156
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.49 E-value=5.6e-06 Score=74.72 Aligned_cols=123 Identities=10% Similarity=0.019 Sum_probs=76.4
Q ss_pred HcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhc
Q 003918 435 TYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKS 514 (786)
Q Consensus 435 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (786)
..++...+...+++....+|+++.. ....+.++..+...|++++|...|+.++...++.. -.
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya-~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~-----------------l~ 84 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYA-ALAALQLAKAAYEQGDYDEAKAALEKALANAPDPE-----------------LK 84 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHH-----------------HH
Confidence 3566666777777777777766322 24555666667777777777777777776544100 11
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 003918 515 LRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGV 576 (786)
Q Consensus 515 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al 576 (786)
..+...++.++...|++++|+..++. +...+-.+.++...|.++...|++++|+..|++++
T Consensus 85 ~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 85 PLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 34455566677777777777777755 23333445566667777777777777777777654
No 157
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.48 E-value=6.7e-06 Score=83.44 Aligned_cols=211 Identities=16% Similarity=0.146 Sum_probs=127.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcc--CCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccC
Q 003918 426 WVAFAKLYETYKDIANARVIFDKAVQVN--YKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADG 503 (786)
Q Consensus 426 ~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 503 (786)
+..-|..|...|++++|...|.++.... .++.......+...+.++.+. ++++|+.+|++++.+...
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~---------- 106 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYRE---------- 106 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHh----------
Confidence 3334456777888888988888886533 334444456667767776555 999999999999865320
Q ss_pred ChhHHHHhhhcHHHHHHHHHHHHHc-CChHHHHHHHHHHHhhcc--CC----HHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 003918 504 NEPVQMKLHKSLRLWTFYVDLEESL-GNLESTRAVYERILDLRI--AT----PQIIINYALLLEEHKYFEDAFRVYERGV 576 (786)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~A~~~~~~al~~~p--~~----~~~~~~~~~~~~~~g~~~~A~~~~~~al 576 (786)
.+...........++.++... |++++|+..|++|++... +. ..++...+.++...|++++|+++|+++.
T Consensus 107 ----~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~ 182 (282)
T PF14938_consen 107 ----AGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVA 182 (282)
T ss_dssp ----CT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ----cCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 000113456778888888888 999999999999998732 22 2467788899999999999999999988
Q ss_pred hhcC-CCC-hHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccC-c--HHHHHHHHHHHHH--cCCHHHHHHHHHH
Q 003918 577 KIFK-YPH-VKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADA-V--KPLYLQYAKLEED--YGLAKRAMKVYDQ 649 (786)
Q Consensus 577 ~~~~-~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~--~~~~~~~a~~~~~--~g~~~~A~~~~~~ 649 (786)
.... .|. ...+-..++....-++..|++..|...|++..+.+|.=. + ..+...+...+.. ...++.|+.-|.+
T Consensus 183 ~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~ 262 (282)
T PF14938_consen 183 KKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDS 262 (282)
T ss_dssp HTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTT
T ss_pred HHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcc
Confidence 7521 121 122211222222223345788888888888888776411 2 2233333333332 2345555555554
Q ss_pred HH
Q 003918 650 AT 651 (786)
Q Consensus 650 ~l 651 (786)
..
T Consensus 263 ~~ 264 (282)
T PF14938_consen 263 IS 264 (282)
T ss_dssp SS
T ss_pred cC
Confidence 43
No 158
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.47 E-value=5.9e-07 Score=68.26 Aligned_cols=64 Identities=17% Similarity=0.287 Sum_probs=49.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChH
Q 003918 520 FYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVK 585 (786)
Q Consensus 520 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~ 585 (786)
..+..+...|++++|+..|+++++..|+++.+|..+|.++...|++++|+..|+++++. +|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~--~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL--DPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCC
Confidence 34666777888888888888888888888888888888888888888888888888876 57653
No 159
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.46 E-value=7.5e-06 Score=76.40 Aligned_cols=122 Identities=12% Similarity=0.108 Sum_probs=100.4
Q ss_pred CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhh
Q 003918 420 GKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRV 499 (786)
Q Consensus 420 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 499 (786)
+.....+..+|..+...|++++|...|++++...|+... ...++..++.++.+.|++++|+..+++++...|
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------- 103 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPND-RSYILYNMGIIYASNGEHDKALEYYHQALELNP------- 103 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccch-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-------
Confidence 356778899999999999999999999999988775431 236889999999999999999999999999988
Q ss_pred hccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhc
Q 003918 500 AADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIF 579 (786)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 579 (786)
.....+..++.++...|+...+...++.++. .+++|++++++++..
T Consensus 104 -------------~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~- 149 (172)
T PRK02603 104 -------------KQPSALNNIAVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRL- 149 (172)
T ss_pred -------------ccHHHHHHHHHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhh-
Confidence 6778888889999888887777666666554 267788888888886
Q ss_pred CCCCh
Q 003918 580 KYPHV 584 (786)
Q Consensus 580 ~~p~~ 584 (786)
+|++
T Consensus 150 -~p~~ 153 (172)
T PRK02603 150 -APNN 153 (172)
T ss_pred -Cchh
Confidence 5765
No 160
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.45 E-value=0.0015 Score=65.09 Aligned_cols=286 Identities=14% Similarity=0.089 Sum_probs=184.9
Q ss_pred CCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccC
Q 003918 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKN 476 (786)
Q Consensus 397 ~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~ 476 (786)
|+-..|.++-.++-+.+.. ...+.++..-++.-.-.|+++.|++-|+.++. +|.... ..+-..|.. -.+.|.
T Consensus 98 Gda~lARkmt~~~~~llss----DqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRl--lGLRgLyle-Aqr~Ga 169 (531)
T COG3898 98 GDASLARKMTARASKLLSS----DQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRL--LGLRGLYLE-AQRLGA 169 (531)
T ss_pred CchHHHHHHHHHHHhhhhc----cchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHH--HhHHHHHHH-HHhccc
Confidence 6777788777775543332 13466667777777788999999999998886 554320 011111111 145789
Q ss_pred HHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhc---cCCH---H
Q 003918 477 FKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLR---IATP---Q 550 (786)
Q Consensus 477 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~~~---~ 550 (786)
.+.|+++-+++-..-| .-+-.|.....-....|+++.|+++.+...+.. ++-. .
T Consensus 170 reaAr~yAe~Aa~~Ap--------------------~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~r 229 (531)
T COG3898 170 REAARHYAERAAEKAP--------------------QLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSR 229 (531)
T ss_pred HHHHHHHHHHHHhhcc--------------------CCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHH
Confidence 9999999998887777 333444444444456789999999888776642 2211 1
Q ss_pred HHHHHHHH-HHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHH
Q 003918 551 IIINYALL-LEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQ 629 (786)
Q Consensus 551 ~~~~~~~~-~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 629 (786)
+-+.-+.. ..-.-+...|...-..++++ .|+....-..-...+. ..|+.-++-.+++.+-+..|. +.++..
T Consensus 230 AvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf---~d~~~rKg~~ilE~aWK~ePH---P~ia~l 301 (531)
T COG3898 230 AVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALF---RDGNLRKGSKILETAWKAEPH---PDIALL 301 (531)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHH---hccchhhhhhHHHHHHhcCCC---hHHHHH
Confidence 11111222 22234577888888888887 5776665554344443 458899999999999998885 667776
Q ss_pred HHHHHHHcCCHHHHH-HHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 003918 630 YAKLEEDYGLAKRAM-KVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEK 708 (786)
Q Consensus 630 ~a~~~~~~g~~~~A~-~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~ 708 (786)
|... +.|+....+ +-.++.-...|++.+.. ..........|++..||.--+.+... .|. ..+++.++.++.
T Consensus 302 Y~~a--r~gdta~dRlkRa~~L~slk~nnaes~--~~va~aAlda~e~~~ARa~Aeaa~r~-~pr---es~~lLlAdIee 373 (531)
T COG3898 302 YVRA--RSGDTALDRLKRAKKLESLKPNNAESS--LAVAEAALDAGEFSAARAKAEAAARE-APR---ESAYLLLADIEE 373 (531)
T ss_pred HHHh--cCCCcHHHHHHHHHHHHhcCccchHHH--HHHHHHHHhccchHHHHHHHHHHhhh-Cch---hhHHHHHHHHHh
Confidence 6543 466654433 22233334455543333 33333345678999999988888888 776 457888899877
Q ss_pred Hc-CChHHHHHHHHHHHcc
Q 003918 709 SL-GEIDRARGIYVFASQF 726 (786)
Q Consensus 709 ~~-g~~~~A~~~~~~al~~ 726 (786)
.. |+-.+++.++-+++..
T Consensus 374 AetGDqg~vR~wlAqav~A 392 (531)
T COG3898 374 AETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hccCchHHHHHHHHHHhcC
Confidence 65 9999999999999985
No 161
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.43 E-value=8.6e-05 Score=72.96 Aligned_cols=184 Identities=11% Similarity=0.028 Sum_probs=97.2
Q ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCc-HHH
Q 003918 548 TPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAV-KPL 626 (786)
Q Consensus 548 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~ 626 (786)
++..++..|......|++++|++.|++++.. .|..+.+-..........+..+++++|+..|++.++..|+++. ..+
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 4445555555556666666666666666665 3433322211111111222445666666666666666665432 223
Q ss_pred HHHHHHHHHHc------------------CCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHH
Q 003918 627 YLQYAKLEEDY------------------GLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIE 688 (786)
Q Consensus 627 ~~~~a~~~~~~------------------g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 688 (786)
++..|..+... ....+|+..|+..++..|++.-.. +|......+-.
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~----------------~A~~rl~~l~~ 172 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTT----------------DATKRLVFLKD 172 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHH----------------HHHHHHHHHHH
Confidence 34444332111 113457788888888888753221 11111111111
Q ss_pred hcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHH
Q 003918 689 SGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSD--TEFWNRWHEFEVNHGNEDTFREML 756 (786)
Q Consensus 689 ~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~~~--~~~~~~~~~~~~~~G~~~~a~~~~ 756 (786)
. -..--+..|.+|.+.|.+.-|..-++.+++. -|++. .+....++..+...|..++|.++.
T Consensus 173 ~------la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~-Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~ 235 (243)
T PRK10866 173 R------LAKYELSVAEYYTKRGAYVAVVNRVEQMLRD-YPDTQATRDALPLMENAYRQLQLNAQADKVA 235 (243)
T ss_pred H------HHHHHHHHHHHHHHcCchHHHHHHHHHHHHH-CCCCchHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 1 1112345577777778888888888888776 34432 455666667777778877777765
No 162
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.42 E-value=1.4e-06 Score=66.26 Aligned_cols=64 Identities=19% Similarity=0.325 Sum_probs=58.7
Q ss_pred HHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhc
Q 003918 466 EWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLR 545 (786)
Q Consensus 466 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 545 (786)
..|..+.+.|++++|+..|++++...| .++.+|..+|.++..+|++++|+..|+++++.+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P--------------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDP--------------------DNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCST--------------------THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCC--------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 467788899999999999999999999 889999999999999999999999999999999
Q ss_pred cCCH
Q 003918 546 IATP 549 (786)
Q Consensus 546 p~~~ 549 (786)
|++|
T Consensus 62 P~~p 65 (65)
T PF13432_consen 62 PDNP 65 (65)
T ss_dssp TT-H
T ss_pred cCCC
Confidence 9886
No 163
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.39 E-value=1.2e-05 Score=74.82 Aligned_cols=104 Identities=13% Similarity=-0.005 Sum_probs=63.5
Q ss_pred hhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHH
Q 003918 439 IANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLW 518 (786)
Q Consensus 439 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (786)
+..+...+.+.++..+.+ .....|..++..+...|++++|...|++++...+.. ...+.+|
T Consensus 15 ~~~~~~~l~~~~~~~~~~--~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~-----------------~~~~~~~ 75 (168)
T CHL00033 15 FTIVADILLRILPTTSGE--KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDP-----------------YDRSYIL 75 (168)
T ss_pred cccchhhhhHhccCCchh--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccc-----------------hhhHHHH
Confidence 344444444444333322 123566666777777777777777777776654410 0123466
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHH
Q 003918 519 TFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEE 561 (786)
Q Consensus 519 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 561 (786)
..++.++...|++++|+..|++++...|.....+..++.++..
T Consensus 76 ~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~ 118 (168)
T CHL00033 76 YNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHY 118 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 6777777777777777777777777777777777777766663
No 164
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.38 E-value=3.9e-05 Score=77.89 Aligned_cols=207 Identities=15% Similarity=0.156 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhcc--CC----HHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHH
Q 003918 516 RLWTFYVDLEESLGNLESTRAVYERILDLRI--AT----PQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWV 589 (786)
Q Consensus 516 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p--~~----~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~ 589 (786)
..+...+..+...|++++|..+|.++....- ++ ...+...+.++.+. ++++|+..|++++..+....++...-
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA 114 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAA 114 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 3444446677777888888888888876522 22 23455556665554 88899999999998754334333222
Q ss_pred HHHHHHHHHh-CC-CChHHHHHHHHHHHhhCCccC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch--hh
Q 003918 590 TYLSKFVKRY-GK-TKLERARELFENAVETAPADA----VKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEK--LG 661 (786)
Q Consensus 590 ~~~~~~~~~~-~~-~~~~~A~~~~~~al~~~p~~~----~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~ 661 (786)
.....+...+ .. |++++|++.|++|++....+. ...++...|.++.+.|++++|+++|++.....-.++. ..
T Consensus 115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~ 194 (282)
T PF14938_consen 115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS 194 (282)
T ss_dssp HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence 2221221112 33 688999999999988733221 2456778888888999999999999988876543321 11
Q ss_pred ---HHHHHHHHHHHhcChhHHHHHHHHHHHhcCC---ChhHHHHHHHHHHHHHH--cCChHHHHHHHHHHH
Q 003918 662 ---MYEIYIARAAEIFGVPKTREIYEQAIESGLP---DKDVKAMCLKYAELEKS--LGEIDRARGIYVFAS 724 (786)
Q Consensus 662 ---~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p---~~~~~~~~~~~~~~~~~--~g~~~~A~~~~~~al 724 (786)
.+...+-++...||+..|+..|++.... .| ......+...+..++.. ...+..|..-|++..
T Consensus 195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~-~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 195 AKEYFLKAILCHLAMGDYVAARKALERYCSQ-DPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT-STTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 1222223445678888888888888776 55 22234455555555543 344556666665543
No 165
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.38 E-value=1.5e-05 Score=71.98 Aligned_cols=120 Identities=16% Similarity=0.028 Sum_probs=88.5
Q ss_pred CCChHHHHHHHHHHHhhCCcc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchh-hHHHHHHHHHHHhcChhH
Q 003918 601 KTKLERARELFENAVETAPAD-AVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKL-GMYEIYIARAAEIFGVPK 678 (786)
Q Consensus 601 ~~~~~~A~~~~~~al~~~p~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~~~~~~~~~~~~~~~~~ 678 (786)
.++...+...+++.++..|+. +.....+.+|..+...|++++|...|+.++...|++.-. .....+.......|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 477888888899999998884 225577778888888999999999999999877653211 222333344457889999
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003918 679 TREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFAS 724 (786)
Q Consensus 679 A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al 724 (786)
|...++.+. . .+- .+.++...|.++...|++++|+..|++|+
T Consensus 104 Al~~L~~~~-~-~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 104 ALATLQQIP-D-EAF--KALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHhcc-C-cch--HHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 998886632 1 222 45577778999999999999999998875
No 166
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.38 E-value=5.7e-05 Score=68.73 Aligned_cols=196 Identities=16% Similarity=0.184 Sum_probs=143.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 003918 515 LRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSK 594 (786)
Q Consensus 515 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~ 594 (786)
..+....|.+|...|-..-|+--|.+++.+.|+-|.+++.+|..+...|+++.|.+.|+..++. +|....+..+-+..
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~ 142 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIA 142 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhcccee
Confidence 4566677788888888899999999999999999999999999999999999999999999998 78776655554433
Q ss_pred HHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHH-HHHHhcCCCCchhhHHHHHHHHHHHh
Q 003918 595 FVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVY-DQATKAVPNHEKLGMYEIYIARAAEI 673 (786)
Q Consensus 595 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~-~~~l~~~p~~~~~~~~~~~~~~~~~~ 673 (786)
++ -.|.+.-|.+-|.+--+.+|+++-..+|..+.. +.-++.+|..-+ +++.+.+ .+.|-|...-. -.
T Consensus 143 ~Y---Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~~d---~e~WG~~iV~~---yL 210 (297)
T COG4785 143 LY---YGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEKSD---KEQWGWNIVEF---YL 210 (297)
T ss_pred ee---ecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHhcc---HhhhhHHHHHH---HH
Confidence 33 347899999999999999999765566665543 346777777555 4444332 23444433222 12
Q ss_pred cChhHHHHHHHHHHHhcCCChh-----HHHHHHHHHHHHHHcCChHHHHHHHHHHHcc
Q 003918 674 FGVPKTREIYEQAIESGLPDKD-----VKAMCLKYAELEKSLGEIDRARGIYVFASQF 726 (786)
Q Consensus 674 ~~~~~A~~~~~~al~~~~p~~~-----~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 726 (786)
|.+. ...+++++..- ..++. -...++.+|..+...|+.++|..+|+-|+..
T Consensus 211 gkiS-~e~l~~~~~a~-a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 211 GKIS-EETLMERLKAD-ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred hhcc-HHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 3332 24455555543 22222 2567888999999999999999999999985
No 167
>PRK11906 transcriptional regulator; Provisional
Probab=98.38 E-value=2.6e-05 Score=80.55 Aligned_cols=152 Identities=13% Similarity=0.086 Sum_probs=120.8
Q ss_pred ChHHHHHHHHHHH---hhccCCHHHHHHHHHHHHHc---c------cHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHH
Q 003918 530 NLESTRAVYERIL---DLRIATPQIIINYALLLEEH---K------YFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVK 597 (786)
Q Consensus 530 ~~~~A~~~~~~al---~~~p~~~~~~~~~~~~~~~~---g------~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~ 597 (786)
..+.|..+|.+++ +.+|+...++..++.++... | ...+|.+.-++++++ +|.++.+....+ ....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--d~~Da~a~~~~g-~~~~ 349 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--TTVDGKILAIMG-LITG 349 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc--CCCCHHHHHHHH-HHHH
Confidence 4678899999999 89999998888887776543 2 346788899999998 788887665533 3222
Q ss_pred HhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChh
Q 003918 598 RYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVP 677 (786)
Q Consensus 598 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~ 677 (786)
. .++++.|...|++++..+|+ +..+|...|.+..-.|+.++|+..++++++..|......+...|++.+. ...++
T Consensus 350 ~--~~~~~~a~~~f~rA~~L~Pn--~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~-~~~~~ 424 (458)
T PRK11906 350 L--SGQAKVSHILFEQAKIHSTD--IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYV-PNPLK 424 (458)
T ss_pred h--hcchhhHHHHHHHHhhcCCc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHc-CCchh
Confidence 2 25699999999999999999 7899999999999999999999999999999998766677777775443 45778
Q ss_pred HHHHHHHHHHHh
Q 003918 678 KTREIYEQAIES 689 (786)
Q Consensus 678 ~A~~~~~~al~~ 689 (786)
+|+.+|-+-.+.
T Consensus 425 ~~~~~~~~~~~~ 436 (458)
T PRK11906 425 NNIKLYYKETES 436 (458)
T ss_pred hhHHHHhhcccc
Confidence 888888775544
No 168
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.37 E-value=1.5e-05 Score=74.47 Aligned_cols=104 Identities=20% Similarity=0.135 Sum_probs=62.0
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch-hhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChhHHHHHH
Q 003918 623 VKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEK-LGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCL 701 (786)
Q Consensus 623 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~~ 701 (786)
....+..+|..+...|++++|...|+++++..|+.+. ...+..++..+.+.|++++|+..+++++.. .|. ....+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~--~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL-NPK--QPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-Ccc--cHHHHH
Confidence 3445666666666667777777777776665554322 233444444445566777777777777766 665 344555
Q ss_pred HHHHHHHHcCC--------------hHHHHHHHHHHHccCCCC
Q 003918 702 KYAELEKSLGE--------------IDRARGIYVFASQFADPR 730 (786)
Q Consensus 702 ~~~~~~~~~g~--------------~~~A~~~~~~al~~~~p~ 730 (786)
.+|.++...|+ +++|.+++.+++.. +|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~-~p~ 152 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL-APN 152 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh-Cch
Confidence 66666665555 45666666676665 555
No 169
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=98.37 E-value=1.7e-05 Score=81.74 Aligned_cols=141 Identities=14% Similarity=0.265 Sum_probs=118.7
Q ss_pred hcHHHHHHHHHHHHHcCC------------hHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcC
Q 003918 513 KSLRLWTFYVDLEESLGN------------LESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFK 580 (786)
Q Consensus 513 ~~~~~~~~~~~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~ 580 (786)
.+...|..++.+....-. .+.-+.+|++|++.+|++..++..+.....+....+...+.+++++..
T Consensus 17 ~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~-- 94 (321)
T PF08424_consen 17 HDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK-- 94 (321)
T ss_pred ccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--
Confidence 788999999987665422 356678999999999999999999999999999999999999999997
Q ss_pred CCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCcc----------------CcHHHHHHHHHHHHHcCCHHHHH
Q 003918 581 YPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPAD----------------AVKPLYLQYAKLEEDYGLAKRAM 644 (786)
Q Consensus 581 ~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----------------~~~~~~~~~a~~~~~~g~~~~A~ 644 (786)
+|.++.+|..|++.....+..-.++..+.+|.++++..... .-..+...++.+....|..+.|+
T Consensus 95 ~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Av 174 (321)
T PF08424_consen 95 NPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAV 174 (321)
T ss_pred CCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHH
Confidence 79999999999998887665567899999999999863220 01347778889999999999999
Q ss_pred HHHHHHHhcCC
Q 003918 645 KVYDQATKAVP 655 (786)
Q Consensus 645 ~~~~~~l~~~p 655 (786)
.+++-.+..+=
T Consensus 175 a~~Qa~lE~n~ 185 (321)
T PF08424_consen 175 ALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHc
Confidence 99999998654
No 170
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.35 E-value=1.3e-06 Score=70.27 Aligned_cols=58 Identities=19% Similarity=0.200 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHH
Q 003918 516 RLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYER 574 (786)
Q Consensus 516 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 574 (786)
..|..++.++...|++++|..++++ .+.+|.++.....+|.++.+.|++++|++++++
T Consensus 26 ~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 26 AYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 3444445555555555555555555 444444444444445555555555555555544
No 171
>PRK11906 transcriptional regulator; Provisional
Probab=98.35 E-value=2.8e-05 Score=80.28 Aligned_cols=173 Identities=7% Similarity=-0.027 Sum_probs=129.6
Q ss_pred HHhhCCCCh---HhH--HHHHHHHH------cCChhhHHHHHHHHH---HhCCCCHHHHHHHHHHHHHh-ccCCCCCchh
Q 003918 19 ELLRNPFSL---KLW--WRYLVAKR------EAPFKKRFVIYERAL---KALPGSYKLWHAYLIERLSI-VKNLPITHPE 83 (786)
Q Consensus 19 ~l~~~p~~~---~~w--~~~~~~~~------~~~~~~~~~~~~~al---~~~P~~~~~w~~~~~~~~~~-~~~~~~~~~~ 83 (786)
+...-|.+. ++| -.+++... .....+|..+|++|+ ..+|.....+-.++...+.. ..........
T Consensus 240 ~~r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~ 319 (458)
T PRK11906 240 SVRLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELA 319 (458)
T ss_pred hhcCCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHH
Confidence 334448888 999 55555432 345578888999999 88888777765555544333 2222224577
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHhcCCChHHHHHHHH
Q 003918 84 YETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYR 163 (786)
Q Consensus 84 ~~~A~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~w~~~~~~~~~~~~~~~~A~~~~~ 163 (786)
..+|..+-++|++.+|.++.+....+....-.++++.|...|++|+..+|.. +..|...+-...-.|+. ++|++.++
T Consensus 320 ~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~--A~~~~~~~~~~~~~G~~-~~a~~~i~ 396 (458)
T PRK11906 320 AQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDI--ASLYYYRALVHFHNEKI-EEARICID 396 (458)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCcc--HHHHHHHHHHHHHcCCH-HHHHHHHH
Confidence 8899999999999999999998888887777778999999999999999965 88899988888788999 99999999
Q ss_pred HHHccCCCCHHHHH-HHHH---hcCCHHHHHHHHH
Q 003918 164 RYLKYDPSHIEDFI-EFLV---KSKLWQEAAERLA 194 (786)
Q Consensus 164 ~~l~~~p~~~~~~~-~~~~---~~g~~~~A~~~~~ 194 (786)
++++++|....+-+ +..+ -....++|++.|-
T Consensus 397 ~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (458)
T PRK11906 397 KSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYY 431 (458)
T ss_pred HHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHh
Confidence 99999999763322 2222 2355666666553
No 172
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.34 E-value=8.9e-05 Score=72.84 Aligned_cols=187 Identities=11% Similarity=-0.013 Sum_probs=122.3
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHH---HHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChH---HH
Q 003918 514 SLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQI---IINYALLLEEHKYFEDAFRVYERGVKIFKYPHVK---DI 587 (786)
Q Consensus 514 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~---~~ 587 (786)
++..++..+.-....|++++|+..|++++...|..+.+ .+.+|..+.+.|++++|+..+++.++.+ |+++ .+
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~--P~~~~~~~a 108 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV 108 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--cCCCchHHH
Confidence 44556666777778999999999999999999998754 4888999999999999999999999984 5544 33
Q ss_pred HHHHHHHHHHH-------h-----CCCC---hHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003918 588 WVTYLSKFVKR-------Y-----GKTK---LERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATK 652 (786)
Q Consensus 588 ~~~~~~~~~~~-------~-----~~~~---~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 652 (786)
+...+...... . ...+ ..+|...|++.++..|+ +.- .. +|...+..+-.
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~--S~y--a~------------~A~~rl~~l~~ 172 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPN--SQY--TT------------DATKRLVFLKD 172 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcC--Chh--HH------------HHHHHHHHHHH
Confidence 33322111000 0 0111 34677999999999998 321 11 11111111111
Q ss_pred cCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChh-HHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003918 653 AVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKD-VKAMCLKYAELEKSLGEIDRARGIYVFAS 724 (786)
Q Consensus 653 ~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al 724 (786)
... ...+ .....+.+.|.+..|..-|+.+++. .|+.. ..++...++..+...|..++|..+.....
T Consensus 173 ~la---~~e~--~ia~~Y~~~~~y~AA~~r~~~v~~~-Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 173 RLA---KYEL--SVAEYYTKRGAYVAVVNRVEQMLRD-YPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHH---HHHH--HHHHHHHHcCchHHHHHHHHHHHHH-CCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 000 0111 1122345677888888888888887 66533 35566777888888999998888776543
No 173
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.34 E-value=0.00011 Score=70.47 Aligned_cols=188 Identities=16% Similarity=0.203 Sum_probs=95.2
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHH-HH
Q 003918 514 SLRLWTFYVDLEESLGNLESTRAVYERILDLRIAT---PQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDI-WV 589 (786)
Q Consensus 514 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~-~~ 589 (786)
++..++..|......|++.+|+..|++++...|.+ +.+.+.+|..+...|+++.|+..+++.++.+ |.++.+ +.
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y--P~~~~~~~A 81 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY--PNSPKADYA 81 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCcchhhH
Confidence 34444455555555666666666666666655544 3455555666666666666666666666552 433321 11
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHH
Q 003918 590 TYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIAR 669 (786)
Q Consensus 590 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~ 669 (786)
.|.. +...|+..-.. . ......+...+|+..|+..++..|+++...-....+
T Consensus 82 ~Y~~-------------g~~~~~~~~~~---------~----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l-- 133 (203)
T PF13525_consen 82 LYML-------------GLSYYKQIPGI---------L----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRL-- 133 (203)
T ss_dssp HHHH-------------HHHHHHHHHHH---------H-----TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHH--
T ss_pred HHHH-------------HHHHHHhCccc---------h----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHH--
Confidence 1100 11111110000 0 112223456788889999999999865333222211
Q ss_pred HHHhcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCCC--HHHHHHHHHHHHHcC
Q 003918 670 AAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSD--TEFWNRWHEFEVNHG 747 (786)
Q Consensus 670 ~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~~~--~~~~~~~~~~~~~~G 747 (786)
..+-.. -..--+..|.++.+.|.+..|..-|+.+++. -|++. .+.+..++..+.+.|
T Consensus 134 --------------~~l~~~------la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~-yp~t~~~~~al~~l~~~y~~l~ 192 (203)
T PF13525_consen 134 --------------AELRNR------LAEHELYIARFYYKRGKYKAAIIRFQYVIEN-YPDTPAAEEALARLAEAYYKLG 192 (203)
T ss_dssp --------------HHHHHH------HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHH-STTSHHHHHHHHHHHHHHHHTT
T ss_pred --------------HHHHHH------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-CCCCchHHHHHHHHHHHHHHhC
Confidence 111111 1123345688888888888888888888887 46642 356666777788888
Q ss_pred CHHHH
Q 003918 748 NEDTF 752 (786)
Q Consensus 748 ~~~~a 752 (786)
..+.+
T Consensus 193 ~~~~a 197 (203)
T PF13525_consen 193 LKQAA 197 (203)
T ss_dssp -HHHH
T ss_pred ChHHH
Confidence 77644
No 174
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.32 E-value=3.6e-05 Score=73.77 Aligned_cols=182 Identities=11% Similarity=0.015 Sum_probs=105.0
Q ss_pred cHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhc
Q 003918 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAA 501 (786)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 501 (786)
.+..++..|......|++.+|+..|++++...|.++.. ..+.+.++..+.+.|+++.|+..+++.+...|..-
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a-~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~------ 76 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYA-PQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP------ 76 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTH-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc------
Confidence 45677888888899999999999999999988887533 36777888888899999999999999998877210
Q ss_pred cCChhHHHHhhhcHHHHHHHHHHH-----------HHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHH
Q 003918 502 DGNEPVQMKLHKSLRLWTFYVDLE-----------ESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFR 570 (786)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~ 570 (786)
..+.+++..|..+ ...+...+|...|+..+...|+++-+- +|..
T Consensus 77 -----------~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~--------------~A~~ 131 (203)
T PF13525_consen 77 -----------KADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAE--------------EAKK 131 (203)
T ss_dssp -----------THHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHH--------------HHHH
T ss_pred -----------chhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHH--------------HHHH
Confidence 1123333333332 223345678889999999988875421 1111
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCc-HHHHHHHHHHHHHcCCHHHH
Q 003918 571 VYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAV-KPLYLQYAKLEEDYGLAKRA 643 (786)
Q Consensus 571 ~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~~a~~~~~~g~~~~A 643 (786)
.+..+.... ....+. .+.++. ..|.+..|...|+.+++..|+... ...+..++..+...|..+.|
T Consensus 132 ~l~~l~~~l---a~~e~~--ia~~Y~---~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 132 RLAELRNRL---AEHELY--IARFYY---KRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHH---HHHHHH--HHHHHH---CTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHH---HHHHHH--HHHHHH---HcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 111111110 000111 122222 346666666666666666665322 34556666666666666643
No 175
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.31 E-value=0.00011 Score=70.19 Aligned_cols=218 Identities=17% Similarity=0.148 Sum_probs=157.5
Q ss_pred HhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHH
Q 003918 472 LRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQI 551 (786)
Q Consensus 472 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 551 (786)
++..+++.|++++..-.+..| .+......++.+|....++..|-.+|++.-...|...+-
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p--------------------~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qY 80 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSP--------------------RSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQY 80 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCc--------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHH
Confidence 567889999999988888888 566677778889989999999999999999999998888
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHH-HHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHH
Q 003918 552 IINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKF-VKRYGKTKLERARELFENAVETAPADAVKPLYLQY 630 (786)
Q Consensus 552 ~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 630 (786)
-+..+.-+++.+.+-.|+.+....... |. +....+..- ...+..+++..++.+.++. |.+.+.....+.
T Consensus 81 rlY~AQSLY~A~i~ADALrV~~~~~D~---~~---L~~~~lqLqaAIkYse~Dl~g~rsLveQl----p~en~Ad~~in~ 150 (459)
T KOG4340|consen 81 RLYQAQSLYKACIYADALRVAFLLLDN---PA---LHSRVLQLQAAIKYSEGDLPGSRSLVEQL----PSENEADGQINL 150 (459)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhcCC---HH---HHHHHHHHHHHHhcccccCcchHHHHHhc----cCCCccchhccc
Confidence 888899999999999999988876652 22 222211100 1123557888888887654 533356678889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHHhc---CCC--------------
Q 003918 631 AKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESG---LPD-------------- 693 (786)
Q Consensus 631 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---~p~-------------- 693 (786)
|.+.++.|+++.|++-|+.+++...-++-+-...+ +. +.+.++++.|..+...+++.| .|.
T Consensus 151 gCllykegqyEaAvqkFqaAlqvsGyqpllAYniA-La-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrs 228 (459)
T KOG4340|consen 151 GCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLA-LA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRS 228 (459)
T ss_pred hheeeccccHHHHHHHHHHHHhhcCCCchhHHHHH-HH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhc
Confidence 99999999999999999999997665443332222 22 246789999988877777642 343
Q ss_pred ---------hhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 003918 694 ---------KDVKAMCLKYAELEKSLGEIDRARGIYV 721 (786)
Q Consensus 694 ---------~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 721 (786)
+....++..-+.++.+.|+++-|++.+-
T Consensus 229 vgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 229 VGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred ccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence 1122334444667788899998887653
No 176
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.31 E-value=1.6e-05 Score=74.00 Aligned_cols=88 Identities=11% Similarity=-0.003 Sum_probs=72.4
Q ss_pred CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhh
Q 003918 421 KPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVA 500 (786)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 500 (786)
.....|..+|..+...|++++|...|++++...|++. ....+|..++.++...|++++|+..+++++...|
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~-~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~-------- 103 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPY-DRSYILYNIGLIHTSNGEHTKALEYYFQALERNP-------- 103 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccch-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--------
Confidence 3467889999999999999999999999998877543 2236899999999999999999999999999988
Q ss_pred ccCChhHHHHhhhcHHHHHHHHHHHHHcC
Q 003918 501 ADGNEPVQMKLHKSLRLWTFYVDLEESLG 529 (786)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 529 (786)
.....+..++.++...|
T Consensus 104 ------------~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 104 ------------FLPQALNNMAVICHYRG 120 (168)
T ss_pred ------------CcHHHHHHHHHHHHHhh
Confidence 55566666677666333
No 177
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.27 E-value=0.00011 Score=67.02 Aligned_cols=192 Identities=15% Similarity=0.071 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCC
Q 003918 425 LWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGN 504 (786)
Q Consensus 425 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 504 (786)
+....|.+|-..|-..-|+.-|.+++.+.|+-+ .+++.++-.+...|+++.|.+.|+..++++|
T Consensus 67 l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~----~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp------------ 130 (297)
T COG4785 67 LLFERGVLYDSLGLRALARNDFSQALAIRPDMP----EVFNYLGIYLTQAGNFDAAYEAFDSVLELDP------------ 130 (297)
T ss_pred HHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcH----HHHHHHHHHHHhcccchHHHHHhhhHhccCC------------
Confidence 334444455556666778888999999999887 8888889888999999999999999999988
Q ss_pred hhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHH--HHHHHHHHHHHcccHHHHHH-HHHHHHhhcCC
Q 003918 505 EPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQ--IIINYALLLEEHKYFEDAFR-VYERGVKIFKY 581 (786)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~~~~~~~~~g~~~~A~~-~~~~al~~~~~ 581 (786)
...-.....|....--|++.-|.+-|.+--+.+|++|- +|..+. ...=++.+|.. +.+|+.+.
T Consensus 131 --------~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~--- 196 (297)
T COG4785 131 --------TYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKS--- 196 (297)
T ss_pred --------cchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhc---
Confidence 33333333333333457888888888888888898874 444432 22234555544 44555553
Q ss_pred CChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 003918 582 PHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAV-----KPLYLQYAKLEEDYGLAKRAMKVYDQATKA 653 (786)
Q Consensus 582 p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 653 (786)
.+..-.|.. ...+. |++. ...+++++..-..++.. .+.++.+|..+...|+.++|..+|+-++..
T Consensus 197 d~e~WG~~i-V~~yL-----gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 197 DKEQWGWNI-VEFYL-----GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred cHhhhhHHH-HHHHH-----hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 222223432 22333 2232 34556666655444211 346777888888889999999999888764
No 178
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=98.27 E-value=1e-06 Score=84.01 Aligned_cols=98 Identities=19% Similarity=0.248 Sum_probs=89.7
Q ss_pred CCCcchHhHHHHhhCCCChHhHHHHHHHHH-cCChhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccCCCCCchhHHHH
Q 003918 9 PSEDDLLYEEELLRNPFSLKLWWRYLVAKR-EAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETL 87 (786)
Q Consensus 9 ~~~~~~~~~~~l~~~p~~~~~w~~~~~~~~-~~~~~~~~~~~~~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A 87 (786)
|-++-.+|.+.-.+.|.++..|..|+.+.+ .+-+..+..+|-.+|+.+|.++++|...+.+++.. .++++.+
T Consensus 89 pqk~~f~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~-------~ani~s~ 161 (435)
T COG5191 89 PQKKIFELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFE-------IANIESS 161 (435)
T ss_pred cceeeEeeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhh-------hccHHHH
Confidence 446677889999999999999999999875 67899999999999999999999999999998764 4899999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003918 88 NNTFERALVTMHKMPRIWIMYLETLT 113 (786)
Q Consensus 88 ~~~~~~al~~~p~~~~~w~~~~~~~~ 113 (786)
+..|.++|...|.+|.+|..|-++++
T Consensus 162 Ra~f~~glR~N~~~p~iw~eyfr~El 187 (435)
T COG5191 162 RAMFLKGLRMNSRSPRIWIEYFRMEL 187 (435)
T ss_pred HHHHHhhhccCCCCchHHHHHHHHHH
Confidence 99999999999999999999999876
No 179
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.26 E-value=3.6e-06 Score=67.73 Aligned_cols=83 Identities=13% Similarity=0.194 Sum_probs=60.4
Q ss_pred cCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcH
Q 003918 436 YKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSL 515 (786)
Q Consensus 436 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (786)
.|+++.|+.+|++++...|.++ -...|..+|.++.+.|++++|+.++++ ....+ .+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~--~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~--------------------~~~ 58 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNP--NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP--------------------SNP 58 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTH--HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH--------------------CHH
T ss_pred CccHHHHHHHHHHHHHHCCCCh--hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC--------------------CCH
Confidence 5778888888888888888542 125677788888888888888888887 54444 445
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHH
Q 003918 516 RLWTFYVDLEESLGNLESTRAVYERI 541 (786)
Q Consensus 516 ~~~~~~~~~~~~~g~~~~A~~~~~~a 541 (786)
.....+|.++..+|++++|+.+|+++
T Consensus 59 ~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 59 DIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 66666688888888888888888764
No 180
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.25 E-value=2.7e-05 Score=81.06 Aligned_cols=120 Identities=16% Similarity=0.141 Sum_probs=104.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHh
Q 003918 520 FYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRY 599 (786)
Q Consensus 520 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~ 599 (786)
.+..+....+.++.|+.+|++..+.+| ++...++.++...++..+|+.+++++++. .|.+..++...+.++.
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~p---ev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl--- 245 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDP---EVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLL--- 245 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCC---cHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH---
Confidence 345555667899999999999998654 57777899999999999999999999986 6988888887777666
Q ss_pred CCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003918 600 GKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQ 649 (786)
Q Consensus 600 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 649 (786)
..++++.|..+.+++++..|. +...|..++.+|...|+++.|+-.+..
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~--~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPS--EFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCch--hHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 458899999999999999999 789999999999999999999977764
No 181
>PRK15331 chaperone protein SicA; Provisional
Probab=98.22 E-value=2.4e-05 Score=69.20 Aligned_cols=92 Identities=8% Similarity=-0.108 Sum_probs=58.8
Q ss_pred HHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhc
Q 003918 466 EWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLR 545 (786)
Q Consensus 466 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 545 (786)
.++--..+.|++++|..+|+-..-.++ .+++.|..++.++..++++++|+..|..+...+
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~--------------------~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~ 101 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDF--------------------YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL 101 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCc--------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 333334456666666666666665555 455666666666666666666666666666666
Q ss_pred cCCHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 003918 546 IATPQIIINYALLLEEHKYFEDAFRVYERGVK 577 (786)
Q Consensus 546 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 577 (786)
+++|...+..|.++...|+.+.|+.+|+-++.
T Consensus 102 ~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 102 KNDYRPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred cCCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 66666666666666666666666666666666
No 182
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.19 E-value=5e-06 Score=63.80 Aligned_cols=64 Identities=16% Similarity=0.206 Sum_probs=56.7
Q ss_pred chhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHH
Q 003918 81 HPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLR 146 (786)
Q Consensus 81 ~~~~~~A~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~w~~~~~ 146 (786)
.|++++|...|++++..+|+++.++..++.+++++|++++|..++++++..+|.+ +.+|...++
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~--~~~~~l~a~ 67 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN--PEYQQLLAQ 67 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH--HHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH--HHHHHHHhc
Confidence 3899999999999999999999999999999999999999999999999999964 566655543
No 183
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.19 E-value=6.6e-06 Score=63.14 Aligned_cols=63 Identities=16% Similarity=0.174 Sum_probs=55.6
Q ss_pred HHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHH
Q 003918 526 ESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVT 590 (786)
Q Consensus 526 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~ 590 (786)
...|++++|+..|++++..+|+++.++..++.++.+.|++++|..++++++.. +|+++..+..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999997 6887766654
No 184
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.17 E-value=5.4e-05 Score=74.84 Aligned_cols=110 Identities=11% Similarity=0.013 Sum_probs=74.0
Q ss_pred HHHHHHHHHHH-HHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhc
Q 003918 423 HTLWVAFAKLY-ETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAA 501 (786)
Q Consensus 423 ~~~~~~~a~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 501 (786)
...++..|..+ .+.|++++|+..|++.+...|++... ..+++.+|.++...|++++|+..|++++...|..
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a-~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s------- 213 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQ-PNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKS------- 213 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-------
Confidence 34455555543 45677888888888888877776321 2566777777777778888887777777665510
Q ss_pred cCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHH
Q 003918 502 DGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQ 550 (786)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 550 (786)
...+.++..++.++...|+.++|+..|+++++..|++..
T Consensus 214 ----------~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 214 ----------PKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred ----------cchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 024566666677777777777777777777777776654
No 185
>PRK15331 chaperone protein SicA; Provisional
Probab=98.17 E-value=3.9e-05 Score=67.85 Aligned_cols=105 Identities=14% Similarity=0.068 Sum_probs=90.9
Q ss_pred CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhh
Q 003918 421 KPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVA 500 (786)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 500 (786)
+.....+.+|--+...|++++|..+|.-....+|.++ ..|+.+|.++...|+++.|+..|..+..+.+
T Consensus 35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~----~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-------- 102 (165)
T PRK15331 35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNP----DYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-------- 102 (165)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--------
Confidence 3455667777778899999999999999999999997 8999999999999999999999999988877
Q ss_pred ccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHH
Q 003918 501 ADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQ 550 (786)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 550 (786)
+++......|.++...|+.+.|+.+|+.++. .|.+..
T Consensus 103 ------------~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~ 139 (165)
T PRK15331 103 ------------NDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDES 139 (165)
T ss_pred ------------CCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHH
Confidence 6667777789999999999999999999998 355443
No 186
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=4e-05 Score=77.11 Aligned_cols=146 Identities=10% Similarity=0.067 Sum_probs=88.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChh
Q 003918 427 VAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEP 506 (786)
Q Consensus 427 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 506 (786)
...|..+.+.|+|..|...|++++..-.... .-+.++......
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~----------------~~~~ee~~~~~~--------------------- 254 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRR----------------SFDEEEQKKAEA--------------------- 254 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhccc----------------cCCHHHHHHHHH---------------------
Confidence 5567788999999999999999887433211 000111111000
Q ss_pred HHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHH
Q 003918 507 VQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKD 586 (786)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~ 586 (786)
.-...+..++.++.+++.+..|+....++|+.+|+++.+++..|.++...|+++.|+..|+++++. +|.|..
T Consensus 255 ------~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka 326 (397)
T KOG0543|consen 255 ------LKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKA 326 (397)
T ss_pred ------HHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHH
Confidence 011333455666667777777777777777777777777777777777777777777777777776 576666
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCC
Q 003918 587 IWVTYLSKFVKRYGKTKLERARELFENAVETAP 619 (786)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 619 (786)
+-..++ .+..+.. ...+..+++|.+++...+
T Consensus 327 ~~~el~-~l~~k~~-~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 327 ARAELI-KLKQKIR-EYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHH-HHHHHHH-HHHHHHHHHHHHHhhccc
Confidence 655543 2322211 234556777777776644
No 187
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.16 E-value=0.00022 Score=63.36 Aligned_cols=129 Identities=16% Similarity=0.127 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhh-ccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 003918 516 RLWTFYVDLEESLGNLESTRAVYERILDL-RIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSK 594 (786)
Q Consensus 516 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~ 594 (786)
.-.+.++......|++.+|+..|++++.- ...++.+...+++.....+++-.|...+++..+..+.-..++.-..++..
T Consensus 90 qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~ 169 (251)
T COG4700 90 QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFART 169 (251)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHH
Confidence 44456778888999999999999999984 66789999999999999999999999999998863221333444444544
Q ss_pred HHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003918 595 FVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQA 650 (786)
Q Consensus 595 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~ 650 (786)
+. ..|.+.+|+..|+.++...|+ ......|+.++.++|+..+|..-+...
T Consensus 170 la---a~g~~a~Aesafe~a~~~ypg---~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 170 LA---AQGKYADAESAFEVAISYYPG---PQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HH---hcCCchhHHHHHHHHHHhCCC---HHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 44 458899999999999999997 678888999999999887776555443
No 188
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.16 E-value=0.00019 Score=63.72 Aligned_cols=129 Identities=13% Similarity=0.149 Sum_probs=108.5
Q ss_pred cHHHHHHHHHHHHHcCChhHHHHHHHHHHh-ccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhh
Q 003918 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQ-VNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVA 500 (786)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 500 (786)
.+...+.+|......|++.+|+..|++++. ...+++ .+.+.+++.....+++..|...+++..+.+|.
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~----a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa------- 156 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDA----AMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA------- 156 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCH----HHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc-------
Confidence 466778999999999999999999999987 455565 78888999889999999999999999988872
Q ss_pred ccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHH
Q 003918 501 ADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYE 573 (786)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~ 573 (786)
..++.....++..+..+|.+..|+..|+.++...| .++.-..|+.++.++|+.+++..-+.
T Consensus 157 -----------~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 157 -----------FRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred -----------cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 14566677889999999999999999999999877 57888889999999997766654443
No 189
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.15 E-value=0.001 Score=65.66 Aligned_cols=203 Identities=20% Similarity=0.242 Sum_probs=135.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHh--ccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhh
Q 003918 423 HTLWVAFAKLYETYKDIANARVIFDKAVQ--VNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVA 500 (786)
Q Consensus 423 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 500 (786)
.......+..+...+.+..+...+...+. ..+... ..+...+......+++..+...+.+++...+
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 126 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLA----EALLNLGLLLEALGKYEEALELLEKALALDP-------- 126 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchH----HHHHHHHHHHHHHhhHHHHHHHHHHHHcCCC--------
Confidence 45666677777788888888888888776 344443 6777777777788888888888888887666
Q ss_pred ccCChhHHHHhhhcHHHHHHHHH-HHHHcCChHHHHHHHHHHHhhcc---CCHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 003918 501 ADGNEPVQMKLHKSLRLWTFYVD-LEESLGNLESTRAVYERILDLRI---ATPQIIINYALLLEEHKYFEDAFRVYERGV 576 (786)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~~~~~~~~~g~~~~A~~~~~~al 576 (786)
........... ++...|+++.|...|.+++...| .....+...+..+...++++.++..+.+++
T Consensus 127 ------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 127 ------------DPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred ------------CcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 22222233333 56677888888888888877655 244555555666667778888888888888
Q ss_pred hhcCCCC-hHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 003918 577 KIFKYPH-VKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVP 655 (786)
Q Consensus 577 ~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p 655 (786)
.. .|. ....+......+. ..+.+..|...+.+++...|. ....+...+..+...|..+.+...+.+.+...|
T Consensus 195 ~~--~~~~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 195 KL--NPDDDAEALLNLGLLYL---KLGKYEEALEYYEKALELDPD--NAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred hh--CcccchHHHHHhhHHHH---HcccHHHHHHHHHHHHhhCcc--cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 76 344 3444444332222 234677788888888877775 344555555555566667777777777777776
Q ss_pred C
Q 003918 656 N 656 (786)
Q Consensus 656 ~ 656 (786)
.
T Consensus 268 ~ 268 (291)
T COG0457 268 D 268 (291)
T ss_pred c
Confidence 4
No 190
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.12 E-value=0.011 Score=65.53 Aligned_cols=220 Identities=14% Similarity=0.151 Sum_probs=107.0
Q ss_pred cCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcH
Q 003918 436 YKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSL 515 (786)
Q Consensus 436 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (786)
.++|.+|.+-..+.++..|+.. .+-..-+-.+.+.|..++|..+++..-...+ ++.
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~----~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~--------------------~D~ 77 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNAL----YAKVLKALSLFRLGKGDEALKLLEALYGLKG--------------------TDD 77 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcH----HHHHHHHHHHHHhcCchhHHHHHhhhccCCC--------------------Cch
Confidence 3556666666666666666654 3333444455666666666655544444444 344
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHH----HHHHHHHHHHhhcCCCCh-HHHHHH
Q 003918 516 RLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFE----DAFRVYERGVKIFKYPHV-KDIWVT 590 (786)
Q Consensus 516 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~----~A~~~~~~al~~~~~p~~-~~~~~~ 590 (786)
.....+-.+|..+|+.++|..+|++++..+|+ ......+=..|.+-+.+. .|+++|+ . .|.+ ..+|..
T Consensus 78 ~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK----~--~pk~~yyfWsV 150 (932)
T KOG2053|consen 78 LTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYK----N--FPKRAYYFWSV 150 (932)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----h--CCcccchHHHH
Confidence 55555556666666666666666666666666 554444444444444433 3333333 2 1322 235554
Q ss_pred HHHHHHHHh-CCC------ChHHHHHHHHHHHhhC-CccCcHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhcCCCCchhh
Q 003918 591 YLSKFVKRY-GKT------KLERARELFENAVETA-PADAVKPLYLQYAKLEEDYGLAKRAMKVYDQ-ATKAVPNHEKLG 661 (786)
Q Consensus 591 ~~~~~~~~~-~~~------~~~~A~~~~~~al~~~-p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~-~l~~~p~~~~~~ 661 (786)
. ..+.... +.. -..-|...+++.++.. +-....+ ...|-.+....|.+++|..++.. .....+.. ...
T Consensus 151 ~-Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE-~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~-~~~ 227 (932)
T KOG2053|consen 151 I-SLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAE-IILYLLILELQGKYQEALEFLAITLAEKLTSA-NLY 227 (932)
T ss_pred H-HHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHH-HHHHHHHHHhcccHHHHHHHHHHHHHHhcccc-chH
Confidence 2 2222110 000 1234566666666655 2221122 22334444556777777777733 22222221 122
Q ss_pred HHHHHHHHHHHhcChhHHHHHHHHHHHh
Q 003918 662 MYEIYIARAAEIFGVPKTREIYEQAIES 689 (786)
Q Consensus 662 ~~~~~~~~~~~~~~~~~A~~~~~~al~~ 689 (786)
+-..-+++....+...+--++-.+.+..
T Consensus 228 l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 228 LENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 2222233333445555555555555555
No 191
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.09 E-value=0.026 Score=60.91 Aligned_cols=46 Identities=20% Similarity=0.268 Sum_probs=33.6
Q ss_pred CCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcHHHHHHHH
Q 003918 79 ITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTF 125 (786)
Q Consensus 79 ~~~~~~~~A~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~~~A~~~~ 125 (786)
+..|+++.|...++. ++.-|+-...|+.++.+.++.|+.--|.+.|
T Consensus 455 id~~df~ra~afles-~~~~~da~amw~~laelale~~nl~iaercf 500 (1636)
T KOG3616|consen 455 IDDGDFDRATAFLES-LEMGPDAEAMWIRLAELALEAGNLFIAERCF 500 (1636)
T ss_pred cccCchHHHHHHHHh-hccCccHHHHHHHHHHHHHHhccchHHHHHH
Confidence 356888888776654 5557888889999999998877755444444
No 192
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.07 E-value=0.01 Score=58.40 Aligned_cols=205 Identities=23% Similarity=0.270 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHh--hccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHH
Q 003918 516 RLWTFYVDLEESLGNLESTRAVYERILD--LRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLS 593 (786)
Q Consensus 516 ~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~ 593 (786)
......+..+...+.+..+...+...+. ..+.....+...+..+...+++..++..+.+++.....+.....+....
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG- 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH-
Confidence 4445556666677788888888888776 5667777778888888888888888888888887532221222222210
Q ss_pred HHHHHhCCCChHHHHHHHHHHHhhCCc-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-chhhHHHHHHHHHH
Q 003918 594 KFVKRYGKTKLERARELFENAVETAPA-DAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNH-EKLGMYEIYIARAA 671 (786)
Q Consensus 594 ~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~~~~~~~~~ 671 (786)
.+. ..|+++.|...|++++...|. ..........+..+...++.+.+...+.+++...|.. .... ......+.
T Consensus 139 ~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 213 (291)
T COG0457 139 ALY---ELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEAL--LNLGLLYL 213 (291)
T ss_pred HHH---HcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHH--HHhhHHHH
Confidence 111 347788888888888776552 1134455555555666788888888888888877762 2222 22223334
Q ss_pred HhcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCC
Q 003918 672 EIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPR 730 (786)
Q Consensus 672 ~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~ 730 (786)
..+++..|...+.+++.. .|. ....+...+..+...|..+.+...+.+++.. .|.
T Consensus 214 ~~~~~~~a~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 268 (291)
T COG0457 214 KLGKYEEALEYYEKALEL-DPD--NAEALYNLALLLLELGRYEEALEALEKALEL-DPD 268 (291)
T ss_pred HcccHHHHHHHHHHHHhh-Ccc--cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh-Ccc
Confidence 556788888888888887 665 2345555666555667788888888888876 443
No 193
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.07 E-value=0.00012 Score=62.48 Aligned_cols=62 Identities=16% Similarity=0.111 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhccC---CHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 003918 516 RLWTFYVDLEESLGNLESTRAVYERILDLRIA---TPQIIINYALLLEEHKYFEDAFRVYERGVK 577 (786)
Q Consensus 516 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 577 (786)
..+..++..+..+|++++|..++++++...|+ +..+...++..+...|+.++|++.+-.++.
T Consensus 39 ~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 39 RALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44445555555555555555555555555444 444444455555555555555555554444
No 194
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.07 E-value=6.9e-05 Score=74.10 Aligned_cols=105 Identities=10% Similarity=0.081 Sum_probs=76.0
Q ss_pred HHHHHHHHH-HHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 003918 462 SIWCEWAEM-ELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYER 540 (786)
Q Consensus 462 ~~~~~~a~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 540 (786)
..++..+.- ....|++++|+..|++.+...|... ..+.+++.+|.++...|+++.|+..|++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~-----------------~a~~A~y~LG~~y~~~g~~~~A~~~f~~ 205 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDST-----------------YQPNANYWLGQLNYNKGKKDDAAYYFAS 205 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCc-----------------chHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 333444433 3556888888888888888777100 1146677778888888888888888888
Q ss_pred HHhhccCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChH
Q 003918 541 ILDLRIAT---PQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVK 585 (786)
Q Consensus 541 al~~~p~~---~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~ 585 (786)
++...|++ +++++.+|.++...|++++|+..|+++++. .|++.
T Consensus 206 vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~--yP~s~ 251 (263)
T PRK10803 206 VVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK--YPGTD 251 (263)
T ss_pred HHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCH
Confidence 88877764 567888888888888888888888888886 46554
No 195
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=0.00011 Score=74.04 Aligned_cols=149 Identities=16% Similarity=0.151 Sum_probs=112.8
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003918 463 IWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERIL 542 (786)
Q Consensus 463 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al 542 (786)
....-++.+.+.|++..|...|++++.....+ ..-+.++.... . ++
T Consensus 210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~--------------------------------~~~~~ee~~~~-~-~~ 255 (397)
T KOG0543|consen 210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYR--------------------------------RSFDEEEQKKA-E-AL 255 (397)
T ss_pred HHHHhhhHHHhhchHHHHHHHHHHHHHHhhcc--------------------------------ccCCHHHHHHH-H-HH
Confidence 33556777889999999999999998654410 00011111111 1 11
Q ss_pred hhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccC
Q 003918 543 DLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADA 622 (786)
Q Consensus 543 ~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 622 (786)
-..++++++.++.+++.+..|+....++|.. +|.|..+.+.-+..+. ..|+++.|+..|+++++..|.
T Consensus 256 -----k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~--~~~N~KALyRrG~A~l---~~~e~~~A~~df~ka~k~~P~-- 323 (397)
T KOG0543|consen 256 -----KLACHLNLAACYLKLKEYKEAIESCNKVLEL--DPNNVKALYRRGQALL---ALGEYDLARDDFQKALKLEPS-- 323 (397)
T ss_pred -----HHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc--CCCchhHHHHHHHHHH---hhccHHHHHHHHHHHHHhCCC--
Confidence 1246889999999999999999999999997 7999998888776665 458999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCC
Q 003918 623 VKPLYLQYAKLEEDYGLA-KRAMKVYDQATKAVPNH 657 (786)
Q Consensus 623 ~~~~~~~~a~~~~~~g~~-~~A~~~~~~~l~~~p~~ 657 (786)
+..+...++.+-.+...+ ++..++|.+++...+..
T Consensus 324 Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~~ 359 (397)
T KOG0543|consen 324 NKAARAELIKLKQKIREYEEKEKKMYANMFAKLAEE 359 (397)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 578888888888886554 45689999999887743
No 196
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.04 E-value=0.0017 Score=66.61 Aligned_cols=308 Identities=13% Similarity=0.131 Sum_probs=197.1
Q ss_pred HHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHh-cCCchHHhhhhhccCChhHHH
Q 003918 431 KLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRAT-AEPSVEVRRRVAADGNEPVQM 509 (786)
Q Consensus 431 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~~ 509 (786)
.++.+..+...+..-.+.+.....+++ ......++++...|++..|.+++...- ...+.. .+.+
T Consensus 214 r~llq~~~Lk~~krevK~vmn~a~~s~----~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~-----------~~T~ 278 (696)
T KOG2471|consen 214 RFLLQTRNLKLAKREVKHVMNIAQDSS----MALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGG-----------TITP 278 (696)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhcCCCc----HHHHHHHHHHHHhcchHHHHHHHHhcccccccCc-----------cccc
Confidence 345556666667666666666666665 666778889999999999998875542 222200 0000
Q ss_pred HhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh---------cc---------CCHHHHHHHHHHHHHcccHHHHHHH
Q 003918 510 KLHKSLRLWTFYVDLEESLGNLESTRAVYERILDL---------RI---------ATPQIIINYALLLEEHKYFEDAFRV 571 (786)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---------~p---------~~~~~~~~~~~~~~~~g~~~~A~~~ 571 (786)
. -.+.-+|..+|-+..+.|.+..+...|.+|++. .| ....+.++.|..+.+.|++-.|.++
T Consensus 279 q-~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqC 357 (696)
T KOG2471|consen 279 Q-LSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQC 357 (696)
T ss_pred h-hhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHH
Confidence 0 013456788888888888999999999999861 11 2346888889999999999999999
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHHhCCC----------------------------------------------ChH
Q 003918 572 YERGVKIFKYPHVKDIWVTYLSKFVKRYGKT----------------------------------------------KLE 605 (786)
Q Consensus 572 ~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~----------------------------------------------~~~ 605 (786)
|.+++..| -.+|.+|..++..+......+ ..+
T Consensus 358 f~~av~vf--h~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~sle 435 (696)
T KOG2471|consen 358 FQKAVHVF--HRNPRLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLE 435 (696)
T ss_pred HHHHHHHH--hcCcHHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccH
Confidence 99999975 567889988766443221100 134
Q ss_pred HHHHHHHHHHhhCCccCc-------------------------------------------------------HHHHHHH
Q 003918 606 RARELFENAVETAPADAV-------------------------------------------------------KPLYLQY 630 (786)
Q Consensus 606 ~A~~~~~~al~~~p~~~~-------------------------------------------------------~~~~~~~ 630 (786)
-|+-++..++-..|.+.+ ..++...
T Consensus 436 fA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ 515 (696)
T KOG2471|consen 436 FARVCLRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANM 515 (696)
T ss_pred HHHHHHHhhhhcCchhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHH
Confidence 566666666654311000 0155566
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHH---hcChhHHHHHHHHHHHh----cC------------
Q 003918 631 AKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAE---IFGVPKTREIYEQAIES----GL------------ 691 (786)
Q Consensus 631 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~---~~~~~~A~~~~~~al~~----~~------------ 691 (786)
+.+....|+.-.|...-.+.++. |+-.....+.+.++..+. ..+..+|+..+.--+-- +.
T Consensus 516 ayV~L~Lgd~i~AL~~a~kLLq~-~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~ 594 (696)
T KOG2471|consen 516 AYVELELGDPIKALSAATKLLQL-ADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWK 594 (696)
T ss_pred HHHHHHhcChhhHHHHHHHHHhh-hhhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhc
Confidence 67777889999999999988873 444455555555543322 34444554443331100 00
Q ss_pred -------------------CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003918 692 -------------------PDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTF 752 (786)
Q Consensus 692 -------------------p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~G~~~~a 752 (786)
++.....+...+|.++.-+|++++|+.++..|........+.......+-+..+.|+...|
T Consensus 595 ~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~a 674 (696)
T KOG2471|consen 595 HTETLDPSTGRTRQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDA 674 (696)
T ss_pred cccccCCcCCCCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcch
Confidence 0111234678889999999999999999999887633222344444455567788999999
Q ss_pred HHHHH
Q 003918 753 REMLR 757 (786)
Q Consensus 753 ~~~~~ 757 (786)
...++
T Consensus 675 l~~lk 679 (696)
T KOG2471|consen 675 LARLK 679 (696)
T ss_pred HHHHH
Confidence 88884
No 197
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=0.012 Score=56.01 Aligned_cols=166 Identities=11% Similarity=0.095 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccC
Q 003918 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADG 503 (786)
Q Consensus 424 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 503 (786)
.....-|.++...|++++|.+...+...+ ++.-.-..+..+...++-|.+.++++.++....+..
T Consensus 109 i~~l~aa~i~~~~~~~deAl~~~~~~~~l---------E~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLt------ 173 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGDFDEALKALHLGENL---------EAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLT------ 173 (299)
T ss_pred HHHHHhhHHhhcCCChHHHHHHHhccchH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHH------
Confidence 33444566778889999998887763322 333344556677788888888888888877632100
Q ss_pred ChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCC
Q 003918 504 NEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPH 583 (786)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~ 583 (786)
.-...|..++ ...+.+..|.-+|+..-+..|..+.+.+..+.+...+|++++|..+++.++.. ++.
T Consensus 174 ---------QLA~awv~la---~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--d~~ 239 (299)
T KOG3081|consen 174 ---------QLAQAWVKLA---TGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK--DAK 239 (299)
T ss_pred ---------HHHHHHHHHh---ccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--cCC
Confidence 0123333332 33456888888888888888888888888888889999999999999999885 688
Q ss_pred hHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCc
Q 003918 584 VKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPA 620 (786)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 620 (786)
+++...+.+-... +.+ .+.+-..+...+.....|.
T Consensus 240 dpetL~Nliv~a~-~~G-kd~~~~~r~l~QLk~~~p~ 274 (299)
T KOG3081|consen 240 DPETLANLIVLAL-HLG-KDAEVTERNLSQLKLSHPE 274 (299)
T ss_pred CHHHHHHHHHHHH-HhC-CChHHHHHHHHHHHhcCCc
Confidence 8877776543222 222 2334445555666666676
No 198
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.03 E-value=0.00011 Score=62.59 Aligned_cols=97 Identities=20% Similarity=0.244 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhccCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCC---hHHHHH
Q 003918 516 RLWTFYVDLEESLGNLESTRAVYERILDLRIAT---PQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPH---VKDIWV 589 (786)
Q Consensus 516 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~---~~~~~~ 589 (786)
.+++..+.++...|+.++|+..|++++...... ..+++.++..+...|++++|+.++++++..+ |+ +..+..
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~ 79 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRV 79 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHH
Confidence 456677888889999999999999999976555 4688999999999999999999999999864 55 555555
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHhh
Q 003918 590 TYLSKFVKRYGKTKLERARELFENAVET 617 (786)
Q Consensus 590 ~~~~~~~~~~~~~~~~~A~~~~~~al~~ 617 (786)
.+...+. ..|..++|...+-.++..
T Consensus 80 f~Al~L~---~~gr~~eAl~~~l~~la~ 104 (120)
T PF12688_consen 80 FLALALY---NLGRPKEALEWLLEALAE 104 (120)
T ss_pred HHHHHHH---HCCCHHHHHHHHHHHHHH
Confidence 5443333 458899999999888874
No 199
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.00 E-value=3.6e-05 Score=59.99 Aligned_cols=65 Identities=23% Similarity=0.306 Sum_probs=56.4
Q ss_pred HHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHH
Q 003918 523 DLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWV 589 (786)
Q Consensus 523 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~ 589 (786)
.++...++++.|+.++++++..+|+++..|..+|.++...|++++|++.++++++. .|+++..-.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL--SPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH--CCCcHHHHH
Confidence 45678899999999999999999999999999999999999999999999999987 577665443
No 200
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.99 E-value=3.1e-05 Score=60.33 Aligned_cols=69 Identities=25% Similarity=0.316 Sum_probs=62.7
Q ss_pred HHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccC
Q 003918 468 AEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIA 547 (786)
Q Consensus 468 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 547 (786)
..++.+.++++.|++++++++...| +++..|..+|.++...|++.+|...|+++++..|+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p--------------------~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDP--------------------DDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCc--------------------ccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 3567889999999999999999999 78999999999999999999999999999999999
Q ss_pred CHHHHHHHH
Q 003918 548 TPQIIINYA 556 (786)
Q Consensus 548 ~~~~~~~~~ 556 (786)
++.+....+
T Consensus 62 ~~~~~~~~a 70 (73)
T PF13371_consen 62 DPDARALRA 70 (73)
T ss_pred cHHHHHHHH
Confidence 988755544
No 201
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=0.017 Score=55.09 Aligned_cols=259 Identities=15% Similarity=0.021 Sum_probs=131.8
Q ss_pred HHHHHHhhcCCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHH
Q 003918 388 WHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEW 467 (786)
Q Consensus 388 ~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 467 (786)
+..+-.+|.|++..++..-++.-. ....+..-.-+++.|...|++...+.-...+- .. .......+
T Consensus 13 F~iRn~fY~Gnyq~~ine~~~~~~-------~~~~~e~d~y~~raylAlg~~~~~~~eI~~~~------~~-~lqAvr~~ 78 (299)
T KOG3081|consen 13 FNIRNYFYLGNYQQCINEAEKFSS-------SKTDVELDVYMYRAYLALGQYQIVISEIKEGK------AT-PLQAVRLL 78 (299)
T ss_pred HHHHHHHHhhHHHHHHHHHHhhcc-------ccchhHHHHHHHHHHHHccccccccccccccc------CC-hHHHHHHH
Confidence 344455555766655554443221 11344555555666666666544333222111 10 11444555
Q ss_pred HHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHH-HHHHHHHHHcCChHHHHHHHHHHHhhcc
Q 003918 468 AEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLW-TFYVDLEESLGNLESTRAVYERILDLRI 546 (786)
Q Consensus 468 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~A~~~~~~al~~~p 546 (786)
+.++...++.+.-+.-+..-+..... .+..+| ..-+.++..-|++++|.....+..
T Consensus 79 a~~~~~e~~~~~~~~~l~E~~a~~~~-------------------~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~---- 135 (299)
T KOG3081|consen 79 AEYLELESNKKSILASLYELVADSTD-------------------GSNLIDLLLAAIIYMHDGDFDEALKALHLGE---- 135 (299)
T ss_pred HHHhhCcchhHHHHHHHHHHHHhhcc-------------------chhHHHHHHhhHHhhcCCChHHHHHHHhccc----
Confidence 55555555544444333333322110 122233 233456667777888777776632
Q ss_pred CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHH-hCCCChHHHHHHHHHHHhhCCccCcHH
Q 003918 547 ATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKR-YGKTKLERARELFENAVETAPADAVKP 625 (786)
Q Consensus 547 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~ 625 (786)
+.++...-..+..+..+++-|...++++..+ +. +. ...+++..+... .+.+++..|--+|+..-+..|. .+.
T Consensus 136 -~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i--de-d~-tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~--T~~ 208 (299)
T KOG3081|consen 136 -NLEAAALNVQILLKMHRFDLAEKELKKMQQI--DE-DA-TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPP--TPL 208 (299)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--ch-HH-HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCC--ChH
Confidence 3333333344555666677777777777765 21 21 111112211111 1445577777778777775555 456
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHH-HHHHHHHHHhcCCC
Q 003918 626 LYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKT-REIYEQAIESGLPD 693 (786)
Q Consensus 626 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A-~~~~~~al~~~~p~ 693 (786)
+....+.+...+|++++|..+++.+|...++.|+..... +......|....+ .+...+.... .|+
T Consensus 209 llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nl--iv~a~~~Gkd~~~~~r~l~QLk~~-~p~ 274 (299)
T KOG3081|consen 209 LLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANL--IVLALHLGKDAEVTERNLSQLKLS-HPE 274 (299)
T ss_pred HHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHH--HHHHHHhCCChHHHHHHHHHHHhc-CCc
Confidence 677777777777888888888888887777655444332 2222344554443 3333443334 555
No 202
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.86 E-value=0.084 Score=58.90 Aligned_cols=127 Identities=10% Similarity=0.092 Sum_probs=91.1
Q ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHhcCCChHHHHHH
Q 003918 82 PEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRV 161 (786)
Q Consensus 82 ~~~~~A~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~w~~~~~~~~~~~~~~~~A~~~ 161 (786)
+++.+|.+..++.++.+|+.+.+-..-+....+.|+.+.|..+++..-..-|+ +......+-.++...+.. ++|..+
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~--D~~tLq~l~~~y~d~~~~-d~~~~~ 99 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT--DDLTLQFLQNVYRDLGKL-DEAVHL 99 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC--chHHHHHHHHHHHHHhhh-hHHHHH
Confidence 78999999999999999999999888899999999999999666654433333 234344555677888999 999999
Q ss_pred HHHHHccCCCCH--HHHHHHHHhcCCHHHHHHHHHHHhcCCCccccCCCcchHHHHHH
Q 003918 162 YRRYLKYDPSHI--EDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLEL 217 (786)
Q Consensus 162 ~~~~l~~~p~~~--~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 217 (786)
|+++++.+|+.. ..++..+++-+.|.+-.+.--++-+. .++..+..|.-.
T Consensus 100 Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~------~pk~~yyfWsV~ 151 (932)
T KOG2053|consen 100 YERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN------FPKRAYYFWSVI 151 (932)
T ss_pred HHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCcccchHHHHH
Confidence 999999999932 23335566667776655443333322 134455566543
No 203
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.84 E-value=0.01 Score=56.72 Aligned_cols=67 Identities=16% Similarity=0.129 Sum_probs=41.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHccCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhhhhHH
Q 003918 701 LKYAELEKSLGEIDRARGIYVFASQFADPRSD--TEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASYSQVIY 771 (786)
Q Consensus 701 ~~~~~~~~~~g~~~~A~~~~~~al~~~~p~~~--~~~~~~~~~~~~~~G~~~~a~~~~~~~~~~~~~~~~~~~ 771 (786)
+..|++|.+.|.+.-|..-++.+++. -|+.. .+..-.+...+.+.|-.++|...- +-++..+.+.-|
T Consensus 171 m~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~---~vl~~N~p~s~~ 239 (254)
T COG4105 171 MAIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTA---KVLGANYPDSQW 239 (254)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHH---HHHHhcCCCCcc
Confidence 34466677777777777777777765 34322 345555666666677777766554 555555555544
No 204
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.79 E-value=0.00076 Score=67.47 Aligned_cols=272 Identities=10% Similarity=-0.004 Sum_probs=173.1
Q ss_pred HHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh----
Q 003918 469 EMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDL---- 544 (786)
Q Consensus 469 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---- 544 (786)
+-+.+.|++...+..|+.++++...++. .-..+|..+++.|.-+++|++|.+....=+.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~----------------tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~l 88 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLS----------------TLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLL 88 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHH----------------HHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHh
Confidence 3446789999999999999988763221 23467888888888889999998765443322
Q ss_pred --ccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCC----ChHHHHHHHHHHHHHH---hCC------C-ChHHHH
Q 003918 545 --RIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYP----HVKDIWVTYLSKFVKR---YGK------T-KLERAR 608 (786)
Q Consensus 545 --~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p----~~~~~~~~~~~~~~~~---~~~------~-~~~~A~ 608 (786)
.-.....--++|..+--.|.|++|+.+..+-+.....- ....++++++..+..+ .+. | ..++++
T Consensus 89 gdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~ 168 (639)
T KOG1130|consen 89 GDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVT 168 (639)
T ss_pred cchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHH
Confidence 11233455678888888999999999988877652111 1223455545444432 011 1 135667
Q ss_pred HHHHHHHhhCCccC-------c----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-chh---hHHHHHHHHHHHh
Q 003918 609 ELFENAVETAPADA-------V----KPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNH-EKL---GMYEIYIARAAEI 673 (786)
Q Consensus 609 ~~~~~al~~~p~~~-------~----~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~---~~~~~~~~~~~~~ 673 (786)
+.|+.+++..-.+. + -..+-+++..|+-.|+++.|+..-+.-+.+...- +.. .....+...+.-.
T Consensus 169 ~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl 248 (639)
T KOG1130|consen 169 SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL 248 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh
Confidence 77777766432210 0 1244556667777899999998877655432210 011 1122222334457
Q ss_pred cChhHHHHHHHHHHHh----cCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCC--CCC--HHHHHHHHHHHHH
Q 003918 674 FGVPKTREIYEQAIES----GLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADP--RSD--TEFWNRWHEFEVN 745 (786)
Q Consensus 674 ~~~~~A~~~~~~al~~----~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p--~~~--~~~~~~~~~~~~~ 745 (786)
|+++.|.+.|++.+.. |. .......++.+|+.|.-..++++|+.++.+-+.+... +.. ....-.++..+..
T Consensus 249 g~fe~A~ehYK~tl~LAielg~-r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~a 327 (639)
T KOG1130|consen 249 GNFELAIEHYKLTLNLAIELGN-RTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNA 327 (639)
T ss_pred cccHhHHHHHHHHHHHHHHhcc-hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 8999999999997654 22 2234678899999999999999999999998776211 111 2333345667888
Q ss_pred cCCHHHHHHHHH
Q 003918 746 HGNEDTFREMLR 757 (786)
Q Consensus 746 ~G~~~~a~~~~~ 757 (786)
.|+..+|.....
T Consensus 328 lg~h~kAl~fae 339 (639)
T KOG1130|consen 328 LGEHRKALYFAE 339 (639)
T ss_pred hhhHHHHHHHHH
Confidence 899888876654
No 205
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.77 E-value=0.0097 Score=56.91 Aligned_cols=182 Identities=15% Similarity=0.122 Sum_probs=112.4
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHH-HHH
Q 003918 514 SLRLWTFYVDLEESLGNLESTRAVYERILDLRIAT---PQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKD-IWV 589 (786)
Q Consensus 514 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~-~~~ 589 (786)
.+..|+.-|.-....|++++|...|+.+....|.+ +++.+.++..+.+.|+++.|+..+++-+..+ |.++. .|.
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly--P~~~n~dY~ 110 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY--PTHPNADYA 110 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC--CCCCChhHH
Confidence 45667777888888999999999999999987765 4788899999999999999999999999985 54443 244
Q ss_pred HHHHHHHHHhC----CCC---hHHHHHHHHHHHhhCCccC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhh
Q 003918 590 TYLSKFVKRYG----KTK---LERARELFENAVETAPADA-VKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLG 661 (786)
Q Consensus 590 ~~~~~~~~~~~----~~~---~~~A~~~~~~al~~~p~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 661 (786)
.|+..+..... ..+ ...|..-|+..++..|+.. ...+-..+. .+...+.. ..
T Consensus 111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~--------------~~~d~LA~------~E 170 (254)
T COG4105 111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIV--------------KLNDALAG------HE 170 (254)
T ss_pred HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHH--------------HHHHHHHH------HH
Confidence 45544332111 112 3467778888888888821 011111110 11111110 01
Q ss_pred HHHHHHHHHHHhcChhHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHHHcCChHHHHHHH
Q 003918 662 MYEIYIARAAEIFGVPKTREIYEQAIESGLPD-KDVKAMCLKYAELEKSLGEIDRARGIY 720 (786)
Q Consensus 662 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~-~~~~~~~~~~~~~~~~~g~~~~A~~~~ 720 (786)
......+.+.|.+-.|..-++.+++. .|+ +........+..++...|..++|...-
T Consensus 171 --m~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~ 227 (254)
T COG4105 171 --MAIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTA 227 (254)
T ss_pred --HHHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHH
Confidence 11122334556666666666666665 443 223445555666677777777666554
No 206
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.77 E-value=0.0077 Score=59.58 Aligned_cols=307 Identities=14% Similarity=0.131 Sum_probs=176.5
Q ss_pred CCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHH----HHHHHHhccCCChhhHHHHHHHHHHHHH
Q 003918 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARV----IFDKAVQVNYKTVDHLASIWCEWAEMEL 472 (786)
Q Consensus 397 ~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~----~~~~al~~~p~~~~~~~~~~~~~a~~~~ 472 (786)
.+.++++..+.+.+..++... .....+-.+.......|.++++.. ...-+.+... ..-....+..++.-..
T Consensus 20 ~~~~~al~~w~~~L~~l~~~~---~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~d--s~~~~ea~lnlar~~e 94 (518)
T KOG1941|consen 20 NQTEKALQVWTKVLEKLSDLM---GRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELED--SDFLLEAYLNLARSNE 94 (518)
T ss_pred chHHHHHHHHHHHHHHHHHHH---HHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 445666666666665433200 001111222333444555554433 3333333221 1112245555666556
Q ss_pred hccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccC--CH-
Q 003918 473 RHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIA--TP- 549 (786)
Q Consensus 473 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~~- 549 (786)
+.-++.+++.+-+-.+..+... .+ .........++.....++.++++++.|+.|+.+..+ ++
T Consensus 95 ~l~~f~kt~~y~k~~l~lpgt~----~~-----------~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~ 159 (518)
T KOG1941|consen 95 KLCEFHKTISYCKTCLGLPGTR----AG-----------QLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAM 159 (518)
T ss_pred HHHHhhhHHHHHHHHhcCCCCC----cc-----------cccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCce
Confidence 6667777777766666665511 00 011233344566777788999999999999987332 32
Q ss_pred ---HHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCC--ChHHHHHHHHHHH----HHHhCCCChHHHHHHHHHHHhhCCc
Q 003918 550 ---QIIINYALLLEEHKYFEDAFRVYERGVKIFKYP--HVKDIWVTYLSKF----VKRYGKTKLERARELFENAVETAPA 620 (786)
Q Consensus 550 ---~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p--~~~~~~~~~~~~~----~~~~~~~~~~~A~~~~~~al~~~p~ 620 (786)
+++..++.++....++++|+-...+|.++...- .+..+-..-+..+ ..+ -.|.+..|.++-+.+.+..-.
T Consensus 160 LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR-~~G~LgdA~e~C~Ea~klal~ 238 (518)
T KOG1941|consen 160 LELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALR-LLGRLGDAMECCEEAMKLALQ 238 (518)
T ss_pred eeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHH-HhcccccHHHHHHHHHHHHHH
Confidence 578999999999999999999999998873211 1211111111111 111 247788888888888776332
Q ss_pred cCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----chhhHHHHHHHHHHHh-----cChhHHHHHHHHHH
Q 003918 621 DAV----KPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNH----EKLGMYEIYIARAAEI-----FGVPKTREIYEQAI 687 (786)
Q Consensus 621 ~~~----~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~~~~~~~~~~~-----~~~~~A~~~~~~al 687 (786)
..+ ......+|++|...|+.+.|..-|+.+......- ..+....+........ +.-=.|++.-++++
T Consensus 239 ~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~l 318 (518)
T KOG1941|consen 239 HGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLL 318 (518)
T ss_pred hCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHH
Confidence 212 3455679999999999999999999988654421 1222222222211111 11134777777777
Q ss_pred HhcCC----ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHc
Q 003918 688 ESGLP----DKDVKAMCLKYAELEKSLGEIDRARGIYVFASQ 725 (786)
Q Consensus 688 ~~~~p----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 725 (786)
+. .. +.........++.+|+..|.-++=++.+.++-+
T Consensus 319 ev-A~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~ 359 (518)
T KOG1941|consen 319 EV-ASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHE 359 (518)
T ss_pred HH-HHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 65 11 111245667789999999988888877777655
No 207
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.72 E-value=7.1e-05 Score=51.26 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHH
Q 003918 516 RLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYAL 557 (786)
Q Consensus 516 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 557 (786)
.+|..++.++...|++++|+.+|+++++.+|+++.+|..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 345566666666666666666666666666666666665553
No 208
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.69 E-value=0.00038 Score=62.25 Aligned_cols=94 Identities=18% Similarity=0.073 Sum_probs=65.9
Q ss_pred hhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccCCC--CCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCC---
Q 003918 42 FKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLP--ITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQK--- 116 (786)
Q Consensus 42 ~~~~~~~~~~al~~~P~~~~~w~~~~~~~~~~~~~~~--~~~~~~~~A~~~~~~al~~~p~~~~~w~~~~~~~~~~~--- 116 (786)
++.++..++.....+|.|++.+..++..++....-.. ....-+++|+.-|+.||.++|+..++...++..+...+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 5678888899999999999999999887655421111 11246888999999999999999999888888877432
Q ss_pred --------cHHHHHHHHHHHHhhCCCC
Q 003918 117 --------FITKARRTFDRALCALPVT 135 (786)
Q Consensus 117 --------~~~~A~~~~~~al~~~p~~ 135 (786)
.+++|...|++|+..+|.+
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 2566777777777777764
No 209
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.68 E-value=8.3e-05 Score=50.92 Aligned_cols=42 Identities=19% Similarity=0.445 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHH
Q 003918 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAE 469 (786)
Q Consensus 424 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~ 469 (786)
.+|..+|..+...|++++|++.|+++++.+|+++ .+|..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~----~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDP----EAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH----HHHHHhhh
Confidence 5789999999999999999999999999999998 88888874
No 210
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.68 E-value=0.00085 Score=64.61 Aligned_cols=111 Identities=13% Similarity=0.040 Sum_probs=85.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCCh
Q 003918 426 WVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNE 505 (786)
Q Consensus 426 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 505 (786)
.+..|--+.+.|++..|...|..-++..|++... ...++.+++.+..+|+++.|..+|.++++..|..
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~-~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s----------- 211 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYT-PNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKS----------- 211 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCccc-chhHHHHHHHHHhcccchHHHHHHHHHHHhCCCC-----------
Confidence 4555556677888999999999999888887533 3677778888888899999998888888766611
Q ss_pred hHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHH
Q 003918 506 PVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIIN 554 (786)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 554 (786)
...+...+.++.+...+|+.++|+..|+++++..|+.+.+-..
T Consensus 212 ------~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 212 ------PKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred ------CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 1456778888888888888888888888888888887765443
No 211
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.68 E-value=0.029 Score=53.23 Aligned_cols=136 Identities=12% Similarity=0.108 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhc-cCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCC----hHHHHHHH
Q 003918 517 LWTFYVDLEESLGNLESTRAVYERILDLR-IATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPH----VKDIWVTY 591 (786)
Q Consensus 517 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~----~~~~~~~~ 591 (786)
..+.++.++...|.+.-...++.+.++.+ |.+|.+...++.+.++.|+.+.|...|+++-+....-+ ...+..+.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34556777777888889999999999987 66788899999999999999999998886654311011 11112221
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 003918 592 LSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNH 657 (786)
Q Consensus 592 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~ 657 (786)
. ..+.+.+++..|...|.+++..+|. ++....+-|.+..-.|+...|++.++.++...|..
T Consensus 259 a---~i~lg~nn~a~a~r~~~~i~~~D~~--~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 259 A---FLHLGQNNFAEAHRFFTEILRMDPR--NAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred h---hheecccchHHHHHHHhhccccCCC--chhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 1 1123678899999999999999998 56666777878888999999999999999999974
No 212
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.61 E-value=0.0012 Score=59.59 Aligned_cols=110 Identities=13% Similarity=0.093 Sum_probs=79.4
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhccCCChhh-HHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCCh
Q 003918 427 VAFAKLYETYKDIANARVIFDKAVQVNYKTVDH-LASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNE 505 (786)
Q Consensus 427 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 505 (786)
..-|.-++..|++++|.+-|..+|...|..+.. .+.+|..-+...++.+..+.|+.-..++|.+.|
T Consensus 99 K~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p------------- 165 (271)
T KOG4234|consen 99 KKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNP------------- 165 (271)
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc-------------
Confidence 444556778888889999998888888765432 345566666677778888888888888888887
Q ss_pred hHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHH
Q 003918 506 PVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYA 556 (786)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 556 (786)
....+....+.+|.+...++.|+.-|+++++.+|...++--..+
T Consensus 166 -------ty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~ 209 (271)
T KOG4234|consen 166 -------TYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIA 209 (271)
T ss_pred -------hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 55566666677777777888888888888888776655433333
No 213
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.60 E-value=0.011 Score=55.29 Aligned_cols=202 Identities=11% Similarity=0.108 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHH------HHHHHHHHHHHcccHHHHHHHHHHHHhhc---CCCChHH
Q 003918 516 RLWTFYVDLEESLGNLESTRAVYERILDLRIATPQ------IIINYALLLEEHKYFEDAFRVYERGVKIF---KYPHVKD 586 (786)
Q Consensus 516 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~~~~~~~~~g~~~~A~~~~~~al~~~---~~p~~~~ 586 (786)
..+..-+..+...+++++|..++.++.+...++.. .+-..+.+......+.++..+|+++...+ +.|+-..
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAA 111 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAA 111 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHH
Confidence 44555566777788999999999999976555533 33344566666778899999999998874 2344332
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHH----hcCCCCc
Q 003918 587 IWVTYLSKFVKRYGKTKLERARELFENAVETAPADA----VKPLYLQYAKLEEDYGLAKRAMKVYDQAT----KAVPNHE 658 (786)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~~a~~~~~~g~~~~A~~~~~~~l----~~~p~~~ 658 (786)
.-+.-+... ....++++|.++|++++...-.+. ....+-..+.++.+...+++|-..+.+-. +...-+.
T Consensus 112 maleKAak~---lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~ 188 (308)
T KOG1585|consen 112 MALEKAAKA---LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNS 188 (308)
T ss_pred HHHHHHHHH---hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhccc
Confidence 222222222 245689999999999988754421 13456667777777777777766554421 1111111
Q ss_pred hhhHHHHHHHHHHHhcChhHHHHHHHHHHHhc-CCChhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 003918 659 KLGMYEIYIARAAEIFGVPKTREIYEQAIESG-LPDKDVKAMCLKYAELEKSLGEIDRARGIYV 721 (786)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 721 (786)
....+.+.+..+....+|-.|...|+.+...+ .-.+.+..+.-++..+|. .|+.+++..+..
T Consensus 189 ~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 189 QCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHHHc
Confidence 22222232333334558888888888876651 112224445555555543 477777666543
No 214
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.54 E-value=0.0093 Score=56.44 Aligned_cols=137 Identities=12% Similarity=0.073 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcc-CCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccC
Q 003918 425 LWVAFAKLYETYKDIANARVIFDKAVQVN-YKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADG 503 (786)
Q Consensus 425 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 503 (786)
+-+.++.++.-.|.|.-....+.+.++.+ |.++ .+...++.+..+.|+.+.|..+|++.-+.... ..+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p----~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~k----L~~--- 247 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEP----QLLSGLGRISMQIGDIKTAEKYFQDVEKVTQK----LDG--- 247 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccH----HHHHHHHHHHHhcccHHHHHHHHHHHHHHHhh----hhc---
Confidence 44667778888899999999999999977 4455 78888999999999999999999876532220 000
Q ss_pred ChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhc
Q 003918 504 NEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIF 579 (786)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 579 (786)
...........+.++...+++..|...|.+++..+|.++.+.++.+.+..-.|+...|++..+.++.+.
T Consensus 248 -------~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 248 -------LQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred -------cchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 001223344445566677899999999999999999999999999999999999999999999999984
No 215
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.52 E-value=0.00037 Score=55.04 Aligned_cols=66 Identities=18% Similarity=0.310 Sum_probs=51.9
Q ss_pred hcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhc---c-C---CHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 003918 513 KSLRLWTFYVDLEESLGNLESTRAVYERILDLR---I-A---TPQIIINYALLLEEHKYFEDAFRVYERGVKI 578 (786)
Q Consensus 513 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p-~---~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 578 (786)
+-..++..++.++..+|++++|+..|++++++. + + ...++.++|.++...|++++|++.+++++++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345777888899999999999999999998761 1 2 2346778889999999999999999988875
No 216
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.52 E-value=9.4e-05 Score=47.05 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=30.8
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHcccHHHHH
Q 003918 537 VYERILDLRIATPQIIINYALLLEEHKYFEDAF 569 (786)
Q Consensus 537 ~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~ 569 (786)
+|+++++.+|+++.+|.++|.++...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 478999999999999999999999999999886
No 217
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.51 E-value=0.0023 Score=55.53 Aligned_cols=57 Identities=21% Similarity=0.187 Sum_probs=24.8
Q ss_pred CChHHHHHHHHHHHhhCCcc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 003918 602 TKLERARELFENAVETAPAD-AVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHE 658 (786)
Q Consensus 602 ~~~~~A~~~~~~al~~~p~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~ 658 (786)
|++.+|++.|+......|.. ....+.+.++..+++.|++++|+..+++.++++|.++
T Consensus 24 ~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 24 GNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred CCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 44444444444444444431 1233444444444444444444444444444444443
No 218
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.49 E-value=0.00046 Score=71.46 Aligned_cols=66 Identities=15% Similarity=-0.023 Sum_probs=63.1
Q ss_pred hcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHH---HHHHHHHHHHcccHHHHHHHHHHHHhh
Q 003918 513 KSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQI---IINYALLLEEHKYFEDAFRVYERGVKI 578 (786)
Q Consensus 513 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~~~~~~g~~~~A~~~~~~al~~ 578 (786)
+++..|..++..+...|++++|+..|+++++++|+++.+ |+++|.+|..+|++++|+..++++++.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 678999999999999999999999999999999999865 999999999999999999999999996
No 219
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.45 E-value=0.0024 Score=53.31 Aligned_cols=95 Identities=16% Similarity=0.115 Sum_probs=72.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHH---HHHHHHHHHHHH
Q 003918 522 VDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKD---IWVTYLSKFVKR 598 (786)
Q Consensus 522 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~---~~~~~~~~~~~~ 598 (786)
+......|+.+.|++.|.+++...|..+.+|++.+..+.-+|+.++|+.-++++++.. .|.--. .+.+-+ .++..
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa-g~~trtacqa~vQRg-~lyRl 127 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELA-GDQTRTACQAFVQRG-LLYRL 127 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc-CccchHHHHHHHHHH-HHHHH
Confidence 4455678999999999999999999999999999999999999999999999999984 343222 233322 22222
Q ss_pred hCCCChHHHHHHHHHHHhhCCc
Q 003918 599 YGKTKLERARELFENAVETAPA 620 (786)
Q Consensus 599 ~~~~~~~~A~~~~~~al~~~p~ 620 (786)
.|+.+.||.-|+.+-+....
T Consensus 128 --~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 128 --LGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred --hCchHHHHHhHHHHHHhCCH
Confidence 37788888888888777543
No 220
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.43 E-value=0.014 Score=60.85 Aligned_cols=182 Identities=18% Similarity=0.201 Sum_probs=113.2
Q ss_pred CChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHH
Q 003918 529 GNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERAR 608 (786)
Q Consensus 529 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~ 608 (786)
.+..+-+++=++||+++|+++.+|.-++. .......+|.++|+++++.. ... +. ... ... ..|..-+.
T Consensus 182 Rnp~aRIkaA~eALei~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAg--E~~---lg-~s~-~~~--~~g~~~e~- 249 (539)
T PF04184_consen 182 RNPQARIKAAKEALEINPDCADAYILLAE--EEASTIVEAEELLRQAVKAG--EAS---LG-KSQ-FLQ--HHGHFWEA- 249 (539)
T ss_pred CCHHHHHHHHHHHHHhhhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHH--HHh---hc-hhh-hhh--cccchhhh-
Confidence 34455556668999999999999888764 33445788999999999862 111 10 000 000 11111111
Q ss_pred HHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHH
Q 003918 609 ELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIE 688 (786)
Q Consensus 609 ~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 688 (786)
...| ...| ...+-..+|.+..+.|+.++|+++++..++.+|......+...++......+.+.++..++.+.=+
T Consensus 250 -~~~R--dt~~---~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 250 -WHRR--DTNV---LVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred -hhcc--ccch---hhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 0110 1111 234556788899999999999999999999998755666677777777788999999999888643
Q ss_pred hcCCChhHHHHHHHHHHHH-HHcCC---------------hHHHHHHHHHHHccCCCCC
Q 003918 689 SGLPDKDVKAMCLKYAELE-KSLGE---------------IDRARGIYVFASQFADPRS 731 (786)
Q Consensus 689 ~~~p~~~~~~~~~~~~~~~-~~~g~---------------~~~A~~~~~~al~~~~p~~ 731 (786)
...|+ +..+.+.-+-+. +..|+ ...|.+.+.||++. +|..
T Consensus 324 i~lpk--SAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvef-NPHV 379 (539)
T PF04184_consen 324 ISLPK--SATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEF-NPHV 379 (539)
T ss_pred ccCCc--hHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHh-CCCC
Confidence 32454 322222222211 11222 24678899999996 7873
No 221
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.43 E-value=0.0018 Score=58.40 Aligned_cols=105 Identities=12% Similarity=0.117 Sum_probs=85.3
Q ss_pred HHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccC
Q 003918 468 AEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIA 547 (786)
Q Consensus 468 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 547 (786)
++-+..+|++++|..-|..|+...|....+ ...-++...+-+..+++..+.|+....++++++|.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e---------------~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt 166 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTE---------------ERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT 166 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHH---------------HHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch
Confidence 444578999999999999999877721100 12245556677778899999999999999999999
Q ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHH
Q 003918 548 TPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWV 589 (786)
Q Consensus 548 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~ 589 (786)
+..++...+.+|.+...+++|++-|+++++. +|....+--
T Consensus 167 y~kAl~RRAeayek~ek~eealeDyKki~E~--dPs~~ear~ 206 (271)
T KOG4234|consen 167 YEKALERRAEAYEKMEKYEEALEDYKKILES--DPSRREARE 206 (271)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--CcchHHHHH
Confidence 9999999999999999999999999999997 787665444
No 222
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.42 E-value=0.38 Score=54.84 Aligned_cols=311 Identities=12% Similarity=0.119 Sum_probs=178.5
Q ss_pred CCCCHHHHHHHHHhhcCCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHH-HcCChhHHHHHHHHHHhccCCC--h
Q 003918 381 NPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYE-TYKDIANARVIFDKAVQVNYKT--V 457 (786)
Q Consensus 381 ~p~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~p~~--~ 457 (786)
++....-|..++. .|++.++-+++...+ .+.....+.+.+|.++. ...+++.|+.++++++.....+ .
T Consensus 26 ~~~~l~~Y~kLI~-------~ai~CL~~~~~~~~l--~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~ 96 (608)
T PF10345_consen 26 SEEQLKQYYKLIA-------TAIKCLEAVLKQFKL--SPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLT 96 (608)
T ss_pred ChhhHHHHHHHHH-------HHHHHHHHHhccCCC--CHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 4444444555544 478888887743322 12345678899999887 7899999999999998766432 2
Q ss_pred hhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHH---HH--HHHHHcCChH
Q 003918 458 DHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTF---YV--DLEESLGNLE 532 (786)
Q Consensus 458 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~g~~~ 532 (786)
+..-..-..++.++.+.+... |...+++.++.... .....|.. +. .+....+++.
T Consensus 97 d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~-------------------~~~~~w~~~frll~~~l~~~~~d~~ 156 (608)
T PF10345_consen 97 DLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET-------------------YGHSAWYYAFRLLKIQLALQHKDYN 156 (608)
T ss_pred HHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc-------------------cCchhHHHHHHHHHHHHHHhcccHH
Confidence 111122334466666666555 99999998865431 01112222 22 2222337999
Q ss_pred HHHHHHHHHHhhc--cCCHHHHHHH----HHHHHHcccHHHHHHHHHHHHhhcC--------CCChHHHHHHHHHHHHHH
Q 003918 533 STRAVYERILDLR--IATPQIIINY----ALLLEEHKYFEDAFRVYERGVKIFK--------YPHVKDIWVTYLSKFVKR 598 (786)
Q Consensus 533 ~A~~~~~~al~~~--p~~~~~~~~~----~~~~~~~g~~~~A~~~~~~al~~~~--------~p~~~~~~~~~~~~~~~~ 598 (786)
.|...++.+.... +.++.+.... +.+....+..+++++...++..... .+....+|...++....-
T Consensus 157 ~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l 236 (608)
T PF10345_consen 157 AALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSL 236 (608)
T ss_pred HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHH
Confidence 9999999998875 4565543322 4455566778888888888855422 133456777766655433
Q ss_pred hCCCChHHHHHH---HHHHHhhCCccC-------c------------------------------HHHHHHHHHHHHHcC
Q 003918 599 YGKTKLERAREL---FENAVETAPADA-------V------------------------------KPLYLQYAKLEEDYG 638 (786)
Q Consensus 599 ~~~~~~~~A~~~---~~~al~~~p~~~-------~------------------------------~~~~~~~a~~~~~~g 638 (786)
..|++..+... +++.++...+.. + ..+|+--+-.....|
T Consensus 237 -~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~ 315 (608)
T PF10345_consen 237 -QQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKG 315 (608)
T ss_pred -HcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhcc
Confidence 34555444443 444443311100 0 001111122223356
Q ss_pred CHHHHHHHHHHHHhcC-------CCCchh--------hHHHHHHHH---------HHHhcChhHHHHHHHHHHHh--cCC
Q 003918 639 LAKRAMKVYDQATKAV-------PNHEKL--------GMYEIYIAR---------AAEIFGVPKTREIYEQAIES--GLP 692 (786)
Q Consensus 639 ~~~~A~~~~~~~l~~~-------p~~~~~--------~~~~~~~~~---------~~~~~~~~~A~~~~~~al~~--~~p 692 (786)
..++|.++++++++.. |..+.. ..|...+.. ..-.++..+|....+.+... ..|
T Consensus 316 ~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~ 395 (608)
T PF10345_consen 316 SMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSP 395 (608)
T ss_pred CchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCc
Confidence 6667877777776422 111111 112111111 12357888888888877654 122
Q ss_pred ----ChhHHHHHHHHHHHHHHcCChHHHHHHHH
Q 003918 693 ----DKDVKAMCLKYAELEKSLGEIDRARGIYV 721 (786)
Q Consensus 693 ----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 721 (786)
....+..++..|-.+...|+.+.|..+|.
T Consensus 396 ~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 396 SKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred cchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 11235566777888889999999999998
No 223
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.42 E-value=0.0041 Score=54.03 Aligned_cols=71 Identities=8% Similarity=-0.117 Sum_probs=52.5
Q ss_pred CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCc
Q 003918 421 KPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPS 492 (786)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~ 492 (786)
.++..++.-|.-..+.|++++|++.|+.+....|-...+ ..+-+.++..+.+.|+++.|+..+++-+++.|
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya-~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP 78 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYA-EQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP 78 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCccc-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 455667777777778888888888888888777765422 25556666667788888888888888888877
No 224
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.38 E-value=0.0027 Score=61.18 Aligned_cols=97 Identities=15% Similarity=0.040 Sum_probs=50.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCc---hhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChh-HHHHHHHHHH
Q 003918 630 YAKLEEDYGLAKRAMKVYDQATKAVPNHE---KLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKD-VKAMCLKYAE 705 (786)
Q Consensus 630 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~-~~~~~~~~~~ 705 (786)
-|.-+.+.|++..|...|...++..|++. +...|.+-.. ...|+++.|..+|..+++. .|+.. .++..+.+|.
T Consensus 147 ~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~--y~qg~y~~Aa~~f~~~~k~-~P~s~KApdallKlg~ 223 (262)
T COG1729 147 AALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESL--YAQGDYEDAAYIFARVVKD-YPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHH--HhcccchHHHHHHHHHHHh-CCCCCCChHHHHHHHH
Confidence 33333445555555555555555555542 2233333222 2455566666666665555 44311 3456666666
Q ss_pred HHHHcCChHHHHHHHHHHHccCCCC
Q 003918 706 LEKSLGEIDRARGIYVFASQFADPR 730 (786)
Q Consensus 706 ~~~~~g~~~~A~~~~~~al~~~~p~ 730 (786)
.....|+.++|+..|+..++. -|+
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~-YP~ 247 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKR-YPG 247 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHH-CCC
Confidence 666666666666666666665 344
No 225
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.34 E-value=0.0038 Score=56.04 Aligned_cols=88 Identities=24% Similarity=0.300 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHhhccCCHHHHHHHHHHHHHccc----------HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHH--
Q 003918 531 LESTRAVYERILDLRIATPQIIINYALLLEEHKY----------FEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKR-- 598 (786)
Q Consensus 531 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~----------~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~-- 598 (786)
++.|++.++.....+|.+++.++++|..+..+.+ +++|++-|+.|+.+ +|+...+...++..+..+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I--~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI--NPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHh
Confidence 6788899999999999999999999887766543 45666667777776 577766555544443322
Q ss_pred hC------CCChHHHHHHHHHHHhhCCc
Q 003918 599 YG------KTKLERARELFENAVETAPA 620 (786)
Q Consensus 599 ~~------~~~~~~A~~~~~~al~~~p~ 620 (786)
+. ...+++|..+|++|+...|+
T Consensus 85 l~~d~~~A~~~F~kA~~~FqkAv~~~P~ 112 (186)
T PF06552_consen 85 LTPDTAEAEEYFEKATEYFQKAVDEDPN 112 (186)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred hcCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 00 01244555555555555554
No 226
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.34 E-value=0.00075 Score=53.24 Aligned_cols=69 Identities=17% Similarity=0.213 Sum_probs=56.4
Q ss_pred cHHHHHHHHHHHHHcCChhHHHHHHHHHHhc---cCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcC
Q 003918 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQV---NYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAE 490 (786)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 490 (786)
...++..+|.++...|++++|+..|++++.. .+++.......+..+|.++...|++++|++++++++++
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3567889999999999999999999999975 23333334678899999999999999999999999864
No 227
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.31 E-value=0.0012 Score=64.38 Aligned_cols=107 Identities=20% Similarity=0.121 Sum_probs=79.2
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChh
Q 003918 427 VAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEP 506 (786)
Q Consensus 427 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 506 (786)
...|.-|.++|.|++|+.+|.+++..+|.++ ..+...+..|.+.+.|..|..-...++.++.
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~Np----V~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-------------- 162 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNP----VYHINRALAYLKQKSFAQAEEDCEAAIALDK-------------- 162 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCc----cchhhHHHHHHHHHHHHHHHHhHHHHHHhhH--------------
Confidence 4556677888888888888888888888776 6777777777777788777777777777766
Q ss_pred HHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHH
Q 003918 507 VQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYAL 557 (786)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 557 (786)
....+|...+..-..+|...+|.+-++.+|++.|++-++--.++.
T Consensus 163 ------~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~ 207 (536)
T KOG4648|consen 163 ------LYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLAR 207 (536)
T ss_pred ------HHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHH
Confidence 455666666666667788888888888888888887665444443
No 228
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.29 E-value=0.075 Score=55.02 Aligned_cols=299 Identities=9% Similarity=0.001 Sum_probs=180.6
Q ss_pred CcHHHHHHHHHHHHHcCChhHHHHHHHHH-HhccCC---Chh-hHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHH
Q 003918 421 KPHTLWVAFAKLYETYKDIANARVIFDKA-VQVNYK---TVD-HLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEV 495 (786)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a-l~~~p~---~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~ 495 (786)
+++.....-++++...|++..|.+.+... +...|. .++ ....+|..++.++.+.|.+.-+..+|.+++...-..+
T Consensus 238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL 317 (696)
T KOG2471|consen 238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL 317 (696)
T ss_pred CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence 45666677788888999999999887653 223333 111 1246789999999999999999999999996211111
Q ss_pred hhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHc---c---------
Q 003918 496 RRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEH---K--------- 563 (786)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~---g--------- 563 (786)
+.++..+....-.-..+..+.+..|..+...|++-.|.++|.++....-.+|.+|..++.+.+.. |
T Consensus 318 --~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~~~l~ee~~~s~ 395 (696)
T KOG2471|consen 318 --RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQKGLLEEGNSSL 395 (696)
T ss_pred --hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhhhccCCc
Confidence 00101000000000145677888898999999999999999999999999999999998776421 1
Q ss_pred -------------------------------------cHHHHHHHHHHHHhhcCC-------------------------
Q 003918 564 -------------------------------------YFEDAFRVYERGVKIFKY------------------------- 581 (786)
Q Consensus 564 -------------------------------------~~~~A~~~~~~al~~~~~------------------------- 581 (786)
..+-|.-+++.++-..+.
T Consensus 396 s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e 475 (696)
T KOG2471|consen 396 SRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHEE 475 (696)
T ss_pred ccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCCCCcCCC
Confidence 123333444444433200
Q ss_pred ------------------C-ChHH----HHHH----HHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHH
Q 003918 582 ------------------P-HVKD----IWVT----YLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLE 634 (786)
Q Consensus 582 ------------------p-~~~~----~~~~----~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~ 634 (786)
| ..+. +-+. |+...+..+..|+.-.|...-++.++... ...++..+|.+|
T Consensus 476 ~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~~~---lS~~~kfLGHiY 552 (696)
T KOG2471|consen 476 GNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQLAD---LSKIYKFLGHIY 552 (696)
T ss_pred CCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhhhh---hhhHHHHHHHHH
Confidence 2 1111 1111 11111222356788888888888877633 345666666665
Q ss_pred H-----HcCCHHHHHHHHHHHH------h-----------------cCCC----------C---chhhHHHHHHHHHHHh
Q 003918 635 E-----DYGLAKRAMKVYDQAT------K-----------------AVPN----------H---EKLGMYEIYIARAAEI 673 (786)
Q Consensus 635 ~-----~~g~~~~A~~~~~~~l------~-----------------~~p~----------~---~~~~~~~~~~~~~~~~ 673 (786)
- ...+..+|...+.--+ . ..|. . ....++..+...+.-.
T Consensus 553 AaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq 632 (696)
T KOG2471|consen 553 AAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAAALALQ 632 (696)
T ss_pred HHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHHHHHHHHHHh
Confidence 4 3566777766553200 0 0010 0 0111222233334457
Q ss_pred cChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHc
Q 003918 674 FGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQ 725 (786)
Q Consensus 674 ~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 725 (786)
|++++|+.++..+... .+.-..+.+...-.-+..+.|+.+.|...+.++--
T Consensus 633 ~~~dqAk~ll~~aatl-~hs~v~~~A~~lavyidL~~G~~q~al~~lk~~~~ 683 (696)
T KOG2471|consen 633 GHHDQAKSLLTHAATL-LHSLVNVQATVLAVYIDLMLGRSQDALARLKQCTH 683 (696)
T ss_pred cccHHHHHHHHHHHHh-hhccccHHHHHHHHHHHHhcCCCcchHHHHHhccc
Confidence 9999999999999887 66322333444334466789999999999988754
No 229
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.28 E-value=0.0011 Score=68.83 Aligned_cols=70 Identities=16% Similarity=0.087 Sum_probs=58.2
Q ss_pred CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcC
Q 003918 420 GKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAE 490 (786)
Q Consensus 420 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 490 (786)
++++..|..+|..+...|++++|+..|++++.++|++.+. ...|+.++.++...|++++|+..++++++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA-~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEA-QAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3678889999999999999999999999999999987511 134888888888999999999999999886
No 230
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.26 E-value=0.0054 Score=51.32 Aligned_cols=94 Identities=17% Similarity=0.075 Sum_probs=58.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHH
Q 003918 631 AKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLP-DKDVKAMCLKYAELEKS 709 (786)
Q Consensus 631 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p-~~~~~~~~~~~~~~~~~ 709 (786)
+.+....|+++.|++.|.+++...|..+......+... .-.|+.++|.+-++++++...| ...-...+..-|.+++.
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~--RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQAL--RLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHH--HHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 33444567777777777777777776554444433333 3456777777777777776112 11224556666777777
Q ss_pred cCChHHHHHHHHHHHcc
Q 003918 710 LGEIDRARGIYVFASQF 726 (786)
Q Consensus 710 ~g~~~~A~~~~~~al~~ 726 (786)
.|+.+.|+.-|++|.+.
T Consensus 128 ~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQL 144 (175)
T ss_pred hCchHHHHHhHHHHHHh
Confidence 77777777777777765
No 231
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.25 E-value=0.037 Score=54.95 Aligned_cols=175 Identities=18% Similarity=0.099 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhcC-CCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCc----H
Q 003918 550 QIIINYALLLEEHKYFEDAFRVYERGVKIFK-YPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAV----K 624 (786)
Q Consensus 550 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~----~ 624 (786)
.++.++++-+.+.-++.+++.+-+-.+..-. +|.....+.. +..-..+.+.+.++++.+.|++++...-++.+ .
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~-l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LEl 162 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVS-LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLEL 162 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhh-hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeee
Confidence 5677888888888888888888777776511 2211111211 22223344677899999999999987433222 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc--hhh-HHHHH-----HHHHHHhcChhHHHHHHHHHHHh----cCC
Q 003918 625 PLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHE--KLG-MYEIY-----IARAAEIFGVPKTREIYEQAIES----GLP 692 (786)
Q Consensus 625 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~--~~~-~~~~~-----~~~~~~~~~~~~A~~~~~~al~~----~~p 692 (786)
.++..++.++.+..++++|.-+..++.+....-. +.. -+... .-.....|..-.|.+.-+.+.+. |+
T Consensus 163 qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gd- 241 (518)
T KOG1941|consen 163 QVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGD- 241 (518)
T ss_pred ehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCC-
Confidence 5888999999999999999988888876654211 110 01111 11124568888888888887664 21
Q ss_pred ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHcc
Q 003918 693 DKDVKAMCLKYAELEKSLGEIDRARGIYVFASQF 726 (786)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 726 (786)
..........+|++|+..|+.+.|..-|+.|...
T Consensus 242 ra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 242 RALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred hHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 1224567788899999999999999999999875
No 232
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.24 E-value=0.034 Score=52.22 Aligned_cols=197 Identities=14% Similarity=0.112 Sum_probs=103.3
Q ss_pred CCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhcc--CCChhhHHHHHHHHHHHHHhc
Q 003918 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVN--YKTVDHLASIWCEWAEMELRH 474 (786)
Q Consensus 397 ~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~a~~~~~~ 474 (786)
.++++|...+.++++....+.++-.....+-+.+.+......+.++...|+++.... ..+++..+.. +..+--...+
T Consensus 45 k~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAma-leKAak~len 123 (308)
T KOG1585|consen 45 KKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMA-LEKAAKALEN 123 (308)
T ss_pred ccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHH-HHHHHHHhhc
Confidence 556777777777664322111111223344444555556677778888888876543 2222222222 2233333556
Q ss_pred cCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh------ccCC
Q 003918 475 KNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDL------RIAT 548 (786)
Q Consensus 475 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~------~p~~ 548 (786)
.+++.|+++|++++.+...+ ++.+-...++...++++.+...+.+|-..|.+-... .|..
T Consensus 124 v~Pd~AlqlYqralavve~~--------------dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~ 189 (308)
T KOG1585|consen 124 VKPDDALQLYQRALAVVEED--------------DRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQ 189 (308)
T ss_pred CCHHHHHHHHHHHHHHHhcc--------------chHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccH
Confidence 78888888888887654310 000012344445555666666676666555544322 2333
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhh--cCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 003918 549 PQIIINYALLLEEHKYFEDAFRVYERGVKI--FKYPHVKDIWVTYLSKFVKRYGKTKLERARELFE 612 (786)
Q Consensus 549 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 612 (786)
...+.....++....++..|..+|+..-.+ +..|++.....+++.. +..|+.+++..+..
T Consensus 190 ~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a----yd~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 190 CKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA----YDEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH----hccCCHHHHHHHHc
Confidence 445666666666667777777777776554 1123444444433322 24566666655543
No 233
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.22 E-value=0.0025 Score=62.35 Aligned_cols=108 Identities=17% Similarity=0.109 Sum_probs=88.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHH
Q 003918 519 TFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKR 598 (786)
Q Consensus 519 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~ 598 (786)
...|+-|-++|.+++|+.+|.+++..+|.+|..+.+.+..|.+...|-.|..-.+.|+.+ +.....+|..-+. .+
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--d~~Y~KAYSRR~~---AR 175 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--DKLYVKAYSRRMQ---AR 175 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--hHHHHHHHHHHHH---HH
Confidence 345777889999999999999999999999999999999999999999999999999987 4444555554332 22
Q ss_pred hCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHH
Q 003918 599 YGKTKLERARELFENAVETAPADAVKPLYLQYAKL 633 (786)
Q Consensus 599 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~ 633 (786)
...|...+|.+-+++++++.|. +.++--.++.+
T Consensus 176 ~~Lg~~~EAKkD~E~vL~LEP~--~~ELkK~~a~i 208 (536)
T KOG4648|consen 176 ESLGNNMEAKKDCETVLALEPK--NIELKKSLARI 208 (536)
T ss_pred HHHhhHHHHHHhHHHHHhhCcc--cHHHHHHHHHh
Confidence 3457899999999999999998 55665555554
No 234
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.21 E-value=0.071 Score=54.94 Aligned_cols=28 Identities=18% Similarity=0.132 Sum_probs=20.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHccCCC
Q 003918 702 KYAELEKSLGEIDRARGIYVFASQFADP 729 (786)
Q Consensus 702 ~~~~~~~~~g~~~~A~~~~~~al~~~~p 729 (786)
.++.+..-.|++++|..+++++....+|
T Consensus 310 Tl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 310 TLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 3556666778888898888888887433
No 235
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.13 E-value=0.00047 Score=43.81 Aligned_cols=33 Identities=9% Similarity=0.006 Sum_probs=29.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHcCCcHHHHH
Q 003918 90 TFERALVTMHKMPRIWIMYLETLTSQKFITKAR 122 (786)
Q Consensus 90 ~~~~al~~~p~~~~~w~~~~~~~~~~~~~~~A~ 122 (786)
+|++|++.+|+|+.+|..++.++...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 378999999999999999999999999998885
No 236
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=97.06 E-value=0.013 Score=50.75 Aligned_cols=97 Identities=19% Similarity=0.324 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCCchh----hHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChh
Q 003918 624 KPLYLQYAKLEEDY----GLAKRAMKVYDQATKAVPNHEKL----GMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKD 695 (786)
Q Consensus 624 ~~~~~~~a~~~~~~----g~~~~A~~~~~~~l~~~p~~~~~----~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~ 695 (786)
..+|..+....... |....-..++++++....+++.+ .....|+.. ..-.+.++++|..+...+... .
T Consensus 22 L~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~y---a~~~~~~~~if~~l~~~~IG~-~ 97 (126)
T PF08311_consen 22 LDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKY---ADLSSDPREIFKFLYSKGIGT-K 97 (126)
T ss_dssp HHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHH---HTTBSHHHHHHHHHHHHTTST-T
T ss_pred hHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHH---HHHccCHHHHHHHHHHcCccH-H
Confidence 44555544444331 33344445555555555443322 222233322 113337777887777763333 2
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003918 696 VKAMCLKYAELEKSLGEIDRARGIYVFAS 724 (786)
Q Consensus 696 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al 724 (786)
.+..|..+|.++...|++++|.++|..++
T Consensus 98 ~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 98 LALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp BHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 56788888888888888888888887764
No 237
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.04 E-value=0.48 Score=50.02 Aligned_cols=141 Identities=13% Similarity=0.166 Sum_probs=95.2
Q ss_pred CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcC-CchHHh---
Q 003918 421 KPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAE-PSVEVR--- 496 (786)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~~~~~~--- 496 (786)
.....|..++....+.|.++.|...+.++...++......+.+.+..+.+....|+..+|+..++..+.. ....+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 4567889999999999999999999999887653221112377788888889999999999988888762 211000
Q ss_pred -hhhh-c-----cCC--h-hHHHHhhhcHHHHHHHHHHHHHc------CChHHHHHHHHHHHhhccCCHHHHHHHHHHHH
Q 003918 497 -RRVA-A-----DGN--E-PVQMKLHKSLRLWTFYVDLEESL------GNLESTRAVYERILDLRIATPQIIINYALLLE 560 (786)
Q Consensus 497 -~~~~-~-----~~~--~-~~~~~~~~~~~~~~~~~~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 560 (786)
.... . +.. . ...........++..+|.+.... +..+.+...|..+++.+|....+|..+|.++.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~ 303 (352)
T PF02259_consen 224 NAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFND 303 (352)
T ss_pred HHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHH
Confidence 0000 0 000 0 00001112346777778777777 78888999999999998888888888887765
Q ss_pred H
Q 003918 561 E 561 (786)
Q Consensus 561 ~ 561 (786)
.
T Consensus 304 ~ 304 (352)
T PF02259_consen 304 K 304 (352)
T ss_pred H
Confidence 4
No 238
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=97.01 E-value=0.029 Score=48.65 Aligned_cols=109 Identities=20% Similarity=0.314 Sum_probs=63.1
Q ss_pred HHHHHHHHHHhcCC-CCchhhHHHHHHHHHHHh----cChhHHHHHHHHHHHhcCCC-------hhHHHHHHHHHHHHHH
Q 003918 642 RAMKVYDQATKAVP-NHEKLGMYEIYIARAAEI----FGVPKTREIYEQAIESGLPD-------KDVKAMCLKYAELEKS 709 (786)
Q Consensus 642 ~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~----~~~~~A~~~~~~al~~~~p~-------~~~~~~~~~~~~~~~~ 709 (786)
.-+..|+..+.... .++++..|..++...... +.-..-..++++++.. ..+ .....+|+.|+....
T Consensus 3 ~~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~-f~~~~~Y~nD~RylkiWi~ya~~~~- 80 (126)
T PF08311_consen 3 QQRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRK-FKDDERYKNDERYLKIWIKYADLSS- 80 (126)
T ss_dssp HHHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHH-HTTSGGGTT-HHHHHHHHHHHTTBS-
T ss_pred HHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHH-HhhhHhhcCCHHHHHHHHHHHHHcc-
Confidence 34556666666665 555666776666654432 3445556677777665 221 113445555554322
Q ss_pred cCChHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003918 710 LGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLR 757 (786)
Q Consensus 710 ~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~G~~~~a~~~~~ 757 (786)
.+.++|..+....-+...+.+|..|+.++...|+.++|.++++
T Consensus 81 -----~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 -----DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp -----HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred -----CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6677777766654444457777777777777777777777763
No 239
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.92 E-value=0.47 Score=46.99 Aligned_cols=160 Identities=12% Similarity=0.055 Sum_probs=105.0
Q ss_pred HHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcC-CchHHhhhhhccCChhHHHH
Q 003918 432 LYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAE-PSVEVRRRVAADGNEPVQMK 510 (786)
Q Consensus 432 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~~~ 510 (786)
.....|++.+|-...++.++-.|.+. ..|..--..+.-+|+...-+..+++++.. ++.. +
T Consensus 112 i~~~~g~~h~a~~~wdklL~d~PtDl----la~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dl-----------p---- 172 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKLLDDYPTDL----LAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADL-----------P---- 172 (491)
T ss_pred HhhccccccHHHHHHHHHHHhCchhh----hhhhhhhhHHHhccchhhhhhHHHHhccccCCCC-----------c----
Confidence 34557888888888899998888875 55555555566678888888888888743 3300 0
Q ss_pred hhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCC---ChHHH
Q 003918 511 LHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYP---HVKDI 587 (786)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p---~~~~~ 587 (786)
-..-+.-.|+-.+...|-+++|.+.-+++++++|.+.-+....+.++...|++.++.+...+.-..-.+. -...-
T Consensus 173 --~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNy 250 (491)
T KOG2610|consen 173 --CYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNY 250 (491)
T ss_pred --HHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhh
Confidence 1122233444556678899999999999999988888888888888888999888888776543321100 00011
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHh
Q 003918 588 WVTYLSKFVKRYGKTKLERARELFENAVE 616 (786)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 616 (786)
|.- +-+. ...+.++.|.++|.+-+-
T Consensus 251 WH~-Al~~---iE~aeye~aleIyD~ei~ 275 (491)
T KOG2610|consen 251 WHT-ALFH---IEGAEYEKALEIYDREIW 275 (491)
T ss_pred HHH-HHhh---hcccchhHHHHHHHHHHH
Confidence 221 1111 133678889888887554
No 240
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.019 Score=53.71 Aligned_cols=102 Identities=18% Similarity=0.168 Sum_probs=83.7
Q ss_pred cCChhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcH
Q 003918 39 EAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFI 118 (786)
Q Consensus 39 ~~~~~~~~~~~~~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~ 118 (786)
.+.+..++..|-+|+..+|..+.+|..-+-..++. .+++.+..-..+|++++|+.+..-..++.+.+....+
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~--------~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKL--------KHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHh--------hhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence 35678889999999999999999999988887765 7889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh---CCCCcchhhHHHHHHHH
Q 003918 119 TKARRTFDRALCA---LPVTQHDRIWEIYLRFV 148 (786)
Q Consensus 119 ~~A~~~~~~al~~---~p~~~~~~~w~~~~~~~ 148 (786)
+.|...+.+|... .|.+...++|..+...-
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak 127 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAK 127 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Confidence 9999999998432 23333467777766543
No 241
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.80 E-value=1.4 Score=50.19 Aligned_cols=325 Identities=12% Similarity=0.125 Sum_probs=183.7
Q ss_pred CCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccC
Q 003918 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKN 476 (786)
Q Consensus 397 ~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~ 476 (786)
+-+.+-++++++.+-...+. ..+..+-..+. +-.-.-+.....++.++.-..+.. .++.+...++-
T Consensus 998 dLp~eLIELLEKIvL~~S~F---se~~nLQnLLi-LtAikad~trVm~YI~rLdnyDa~----------~ia~iai~~~L 1063 (1666)
T KOG0985|consen 998 DLPNELIELLEKIVLDNSVF---SENRNLQNLLI-LTAIKADRTRVMEYINRLDNYDAP----------DIAEIAIENQL 1063 (1666)
T ss_pred CCcHHHHHHHHHHhcCCccc---ccchhhhhhHH-HHHhhcChHHHHHHHHHhccCCch----------hHHHHHhhhhH
Confidence 55778899999987332221 12222211111 111223334455555554333322 24455556666
Q ss_pred HHHHHHHHHHHhcCCch-HH-hhhhh-ccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHH
Q 003918 477 FKGALELMRRATAEPSV-EV-RRRVA-ADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIII 553 (786)
Q Consensus 477 ~~~A~~~~~~al~~~~~-~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 553 (786)
+++|..+|++---.... .+ ...++ .+.|..-..+ -+.+.+|..++......|...+|++.|-++ ++|..|.
T Consensus 1064 yEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~-~n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~ 1137 (1666)
T KOG0985|consen 1064 YEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAER-CNEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYL 1137 (1666)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHh-hCChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHH
Confidence 77777777653211110 00 00000 1111000000 156789999999999999999999999776 8899999
Q ss_pred HHHHHHHHcccHHHHHHHHHHHHhhcCCCCh-HHHHHHHHHH-----HHHH----------------hCCCChHHHHHHH
Q 003918 554 NYALLLEEHKYFEDAFRVYERGVKIFKYPHV-KDIWVTYLSK-----FVKR----------------YGKTKLERARELF 611 (786)
Q Consensus 554 ~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~-~~~~~~~~~~-----~~~~----------------~~~~~~~~A~~~~ 611 (786)
.......+.|.+++-+..+..+.+..+.|.- ..+...|+.. +... +..+.++.|+-+|
T Consensus 1138 eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y 1217 (1666)
T KOG0985|consen 1138 EVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLY 1217 (1666)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHH
Confidence 9999999999999999999888887655542 2333333221 0000 0112233333332
Q ss_pred HHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---------cCCCCchhh--------------HHHHHHH
Q 003918 612 ENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATK---------AVPNHEKLG--------------MYEIYIA 668 (786)
Q Consensus 612 ~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~---------~~p~~~~~~--------------~~~~~~~ 668 (786)
. ++.-|..++..+...|+++.|...-+++-. .+-+..++. -...++.
T Consensus 1218 ~----------~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~ 1287 (1666)
T KOG0985|consen 1218 S----------NVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIE 1287 (1666)
T ss_pred H----------HhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHH
Confidence 2 244567777777777888877766655421 121111221 2333445
Q ss_pred HHHHhcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHccCCCCC-----CHHHHHHHHH
Q 003918 669 RAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLG--EIDRARGIYVFASQFADPRS-----DTEFWNRWHE 741 (786)
Q Consensus 669 ~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g--~~~~A~~~~~~al~~~~p~~-----~~~~~~~~~~ 741 (786)
.+...|-+++-+.+++.++.. ... ...++-.+|.+|.+-. ..-+=.++|..=+.+ |.. .+-+|..++-
T Consensus 1288 ~Yq~rGyFeElIsl~Ea~LGL-ERA--HMgmfTELaiLYskykp~km~EHl~LFwsRvNi--pKviRA~eqahlW~Elvf 1362 (1666)
T KOG0985|consen 1288 YYQDRGYFEELISLLEAGLGL-ERA--HMGMFTELAILYSKYKPEKMMEHLKLFWSRVNI--PKVIRAAEQAHLWSELVF 1362 (1666)
T ss_pred HHHhcCcHHHHHHHHHhhhch-hHH--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHHH
Confidence 555678888888888888866 222 4556777777776642 223344455443332 210 2568999999
Q ss_pred HHHHcCCHHHHHHHH
Q 003918 742 FEVNHGNEDTFREML 756 (786)
Q Consensus 742 ~~~~~G~~~~a~~~~ 756 (786)
+|.+...+++|.-+.
T Consensus 1363 LY~~y~eyDNAa~tm 1377 (1666)
T KOG0985|consen 1363 LYDKYEEYDNAALTM 1377 (1666)
T ss_pred HHHhhhhhhHHHHHH
Confidence 999999998886655
No 242
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.42 Score=45.77 Aligned_cols=184 Identities=13% Similarity=0.190 Sum_probs=97.6
Q ss_pred hhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHH-cCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHH
Q 003918 400 TKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYET-YKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFK 478 (786)
Q Consensus 400 ~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~ 478 (786)
..|..+-+.+| .++| .+-.+|.-.-.+... ..+..+=...+++++.-+|.+. ++|..--.+....|++.
T Consensus 60 ~RAl~LT~d~i-~lNp-----AnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNY----QvWHHRr~ive~l~d~s 129 (318)
T KOG0530|consen 60 PRALQLTEDAI-RLNP-----ANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNY----QVWHHRRVIVELLGDPS 129 (318)
T ss_pred HHHHHHHHHHH-HhCc-----ccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccch----hHHHHHHHHHHHhcCcc
Confidence 34555555555 3444 334444333333222 2334555666666777777776 77766666655666655
Q ss_pred -HHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHH
Q 003918 479 -GALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYAL 557 (786)
Q Consensus 479 -~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 557 (786)
.-+...++++..+. ++-.+|...--+....+.++.-+..-.+.++.+..+-.+|+..-.
T Consensus 130 ~rELef~~~~l~~Da--------------------KNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryf 189 (318)
T KOG0530|consen 130 FRELEFTKLMLDDDA--------------------KNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYF 189 (318)
T ss_pred cchHHHHHHHHhccc--------------------cchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeE
Confidence 55566666666655 556666666666666667777777777777766666566654321
Q ss_pred HHHH-cc-----cHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 003918 558 LLEE-HK-----YFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAV 615 (786)
Q Consensus 558 ~~~~-~g-----~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 615 (786)
+... .| ..+.-+....+.|.. .|.+..+|.-+.+.+....+.....+.....+..+
T Consensus 190 vi~~~~~~~~~~~le~El~yt~~~I~~--vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~ 251 (318)
T KOG0530|consen 190 VITNTKGVISKAELERELNYTKDKILL--VPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLY 251 (318)
T ss_pred EEEeccCCccHHHHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHh
Confidence 1111 11 123334445555555 47777777744333322222223344444444443
No 243
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=96.76 E-value=0.0026 Score=40.07 Aligned_cols=32 Identities=34% Similarity=0.530 Sum_probs=28.8
Q ss_pred CChhhHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003918 40 APFKKRFVIYERALKALPGSYKLWHAYLIERL 71 (786)
Q Consensus 40 ~~~~~~~~~~~~al~~~P~~~~~w~~~~~~~~ 71 (786)
++.+.++.+|++++..+|.++.+|..|+.++.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~ 32 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFEE 32 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 35678999999999999999999999999864
No 244
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.76 E-value=0.0032 Score=40.11 Aligned_cols=33 Identities=18% Similarity=0.377 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhccCCC
Q 003918 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYKT 456 (786)
Q Consensus 424 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 456 (786)
.+|..+|.++...|++++|+..|++++.++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 578889999999999999999999999998864
No 245
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.33 Score=47.62 Aligned_cols=123 Identities=8% Similarity=-0.044 Sum_probs=91.2
Q ss_pred HHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHH---HHHHHHHHhCC
Q 003918 525 EESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVT---YLSKFVKRYGK 601 (786)
Q Consensus 525 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~---~~~~~~~~~~~ 601 (786)
....|++..|...|+.++...|.+..+...++.++...|+.+.|..++...-... ....|.. .+..+...-..
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~----~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQA----QDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccc----hhhHHHHHHHHHHHHHHHhcC
Confidence 3467899999999999999999999999999999999999999999888643321 1122222 12222211112
Q ss_pred CChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 003918 602 TKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNH 657 (786)
Q Consensus 602 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~ 657 (786)
++. ..+++.+..+|+ +...-+.+|..+...|+.+.|.+.+-..++.+-..
T Consensus 220 ~~~----~~l~~~~aadPd--d~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~ 269 (304)
T COG3118 220 PEI----QDLQRRLAADPD--DVEAALALADQLHLVGRNEAALEHLLALLRRDRGF 269 (304)
T ss_pred CCH----HHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 222 345666778998 77899999999999999999999888888766543
No 246
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.73 E-value=0.3 Score=50.48 Aligned_cols=193 Identities=11% Similarity=0.026 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhh----ccCCHHHHHHHHHHHHH---cccHHHHHHHHHHHHhhcCCCChHHHH
Q 003918 516 RLWTFYVDLEESLGNLESTRAVYERILDL----RIATPQIIINYALLLEE---HKYFEDAFRVYERGVKIFKYPHVKDIW 588 (786)
Q Consensus 516 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~---~g~~~~A~~~~~~al~~~~~p~~~~~~ 588 (786)
.+...+.-.|....+++.-+.+.+..-.. -++.+.+-..+|..+.+ .|+.++|+.++..++.. ..+.+++.+
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~ 220 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTL 220 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHH
Confidence 44444555567778899888888887766 45567788899999988 89999999999997765 356667766
Q ss_pred HHHHHHHHHHh------CCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHH----HHH---HHHH-hc-
Q 003918 589 VTYLSKFVKRY------GKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAM----KVY---DQAT-KA- 653 (786)
Q Consensus 589 ~~~~~~~~~~~------~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~----~~~---~~~l-~~- 653 (786)
-..+..+-... .....++|+..|.++.+..|+-+ .=.+++-+....|...+.. ++- ...+ ++
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y---~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg 297 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYY---SGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKG 297 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcccc---chHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhc
Confidence 65443322111 12347899999999999997632 3456666666666533322 222 1111 11
Q ss_pred -CCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHcc
Q 003918 654 -VPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQF 726 (786)
Q Consensus 654 -~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 726 (786)
..+..++|....++....-.|++++|.+.+++++.. .|. .|. +. -+.+=+.++.+....
T Consensus 298 ~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l-~~~-----~W~-l~-------St~~ni~Li~~~~~~ 357 (374)
T PF13281_consen 298 SLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL-KPP-----AWE-LE-------STLENIKLIRHFRKR 357 (374)
T ss_pred cccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc-CCc-----chh-HH-------HHHHHHHHHHHHhcC
Confidence 112356777777777777789999999999999988 665 453 11 233445566666554
No 247
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.72 E-value=0.17 Score=53.14 Aligned_cols=183 Identities=11% Similarity=0.113 Sum_probs=100.8
Q ss_pred hccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHH
Q 003918 473 RHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQII 552 (786)
Q Consensus 473 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 552 (786)
+..++..-++.-++|+++.| +++.+|..++. .......+|..+|+++++.....
T Consensus 180 RERnp~aRIkaA~eALei~p--------------------dCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~---- 233 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEINP--------------------DCADAYILLAE--EEASTIVEAEELLRQAVKAGEAS---- 233 (539)
T ss_pred hcCCHHHHHHHHHHHHHhhh--------------------hhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHHh----
Confidence 44566666777788898888 66677665543 34556889999999998852221
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHH
Q 003918 553 INYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAK 632 (786)
Q Consensus 553 ~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~ 632 (786)
+.........|..- ..... .+.++..+...--..+.+ ..|..++|++.|...++..|......+..++..
T Consensus 234 lg~s~~~~~~g~~~-------e~~~~--Rdt~~~~y~KrRLAmCar-klGr~~EAIk~~rdLlke~p~~~~l~IrenLie 303 (539)
T PF04184_consen 234 LGKSQFLQHHGHFW-------EAWHR--RDTNVLVYAKRRLAMCAR-KLGRLREAIKMFRDLLKEFPNLDNLNIRENLIE 303 (539)
T ss_pred hchhhhhhcccchh-------hhhhc--cccchhhhhHHHHHHHHH-HhCChHHHHHHHHHHHhhCCccchhhHHHHHHH
Confidence 11111111112111 11110 112222222211111111 347788888888888887776445667788888
Q ss_pred HHHHcCCHHHHHHHHHHHHhc-CCCCchhhHHHHHHHHHHHhcC---------------hhHHHHHHHHHHHhcCCC
Q 003918 633 LEEDYGLAKRAMKVYDQATKA-VPNHEKLGMYEIYIARAAEIFG---------------VPKTREIYEQAIESGLPD 693 (786)
Q Consensus 633 ~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~~~~~~~~~~~~~---------------~~~A~~~~~~al~~~~p~ 693 (786)
.+...+.+.++..++.+--+. .|++. .+.+..-+......++ .-.|.+.+.+|++. +|.
T Consensus 304 ~LLelq~Yad~q~lL~kYdDi~lpkSA-ti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvef-NPH 378 (539)
T PF04184_consen 304 ALLELQAYADVQALLAKYDDISLPKSA-TICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEF-NPH 378 (539)
T ss_pred HHHhcCCHHHHHHHHHHhccccCCchH-HHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHh-CCC
Confidence 888888888888777774332 23222 2333332222222222 12367888899888 775
No 248
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.67 E-value=0.58 Score=44.02 Aligned_cols=142 Identities=15% Similarity=0.123 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHH-cCChHHHHHHHHH
Q 003918 462 SIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEES-LGNLESTRAVYER 540 (786)
Q Consensus 462 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~A~~~~~~ 540 (786)
..|...+..+ +.+++++|..++++++.+.... +++.........++.+|.. +.++++|+..|++
T Consensus 75 t~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~--------------Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~ 139 (288)
T KOG1586|consen 75 TTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDM--------------GRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQ 139 (288)
T ss_pred HHHHHHHHHh-hccChHHHHHHHHHHHHHHHhh--------------hHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHH
Confidence 4444444443 4569999999999999876621 1111233455567777654 4889999999999
Q ss_pred HHhhccCCH------HHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChH-HHHHHHH---HHHHHHhCCCChHHHHHH
Q 003918 541 ILDLRIATP------QIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVK-DIWVTYL---SKFVKRYGKTKLERAREL 610 (786)
Q Consensus 541 al~~~p~~~------~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~-~~~~~~~---~~~~~~~~~~~~~~A~~~ 610 (786)
+-+...... ..++..+.+-...|++.+|+.+|+++.... -++. .-|..-. ...+-++-..+.-.+...
T Consensus 140 Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s--~~n~LLKys~KdyflkAgLChl~~~D~v~a~~A 217 (288)
T KOG1586|consen 140 AAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSS--LDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRA 217 (288)
T ss_pred HHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccchHHHhHHHHHHHHHHHHhHhcccHHHHHHH
Confidence 987644332 345566777777888888888888887751 2221 1122111 111112223456667777
Q ss_pred HHHHHhhCCc
Q 003918 611 FENAVETAPA 620 (786)
Q Consensus 611 ~~~al~~~p~ 620 (786)
+++..+.+|.
T Consensus 218 Leky~~~dP~ 227 (288)
T KOG1586|consen 218 LEKYQELDPA 227 (288)
T ss_pred HHHHHhcCCc
Confidence 7777777776
No 249
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.67 E-value=0.0029 Score=40.32 Aligned_cols=32 Identities=13% Similarity=0.260 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhccCC
Q 003918 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYK 455 (786)
Q Consensus 424 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 455 (786)
.+|+.+|..+...|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 57889999999999999999999999999886
No 250
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=96.60 E-value=0.0043 Score=39.07 Aligned_cols=32 Identities=28% Similarity=0.475 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003918 82 PEYETLNNTFERALVTMHKMPRIWIMYLETLT 113 (786)
Q Consensus 82 ~~~~~A~~~~~~al~~~p~~~~~w~~~~~~~~ 113 (786)
|+++.|+.+|++++...|.++.+|+.|+.++.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~ 32 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFEE 32 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 35678889999999999999999999988764
No 251
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.59 E-value=0.66 Score=43.66 Aligned_cols=129 Identities=22% Similarity=0.169 Sum_probs=69.8
Q ss_pred CCChHHHHHHHHHHHhhCCccCc----HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCchhh----HHHHHHHHHH
Q 003918 601 KTKLERARELFENAVETAPADAV----KPLYLQYAKLEEDY-GLAKRAMKVYDQATKAVPNHEKLG----MYEIYIARAA 671 (786)
Q Consensus 601 ~~~~~~A~~~~~~al~~~p~~~~----~~~~~~~a~~~~~~-g~~~~A~~~~~~~l~~~p~~~~~~----~~~~~~~~~~ 671 (786)
..++++|..++++++++..+-.. ..-+..+|.++... .++++|+..|+.+-+....+.... ..........
T Consensus 86 k~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa 165 (288)
T KOG1586|consen 86 KVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAA 165 (288)
T ss_pred ccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHH
Confidence 35666777777777666443111 12344566666664 677777777777776665432221 1122222334
Q ss_pred HhcChhHHHHHHHHHHHhcCCChh----HHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCC
Q 003918 672 EIFGVPKTREIYEQAIESGLPDKD----VKAMCLKYAELEKSLGEIDRARGIYVFASQFADPR 730 (786)
Q Consensus 672 ~~~~~~~A~~~~~~al~~~~p~~~----~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~ 730 (786)
..++|.+|+.+|+++......++. ....++.-|-.+.-.++.-.+...+++-.+. +|.
T Consensus 166 ~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~-dP~ 227 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQEL-DPA 227 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhc-CCc
Confidence 567777888888777665122211 1223333333444446666666666666665 564
No 252
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.38 Score=46.04 Aligned_cols=171 Identities=15% Similarity=0.170 Sum_probs=130.5
Q ss_pred cCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhc-cCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhc
Q 003918 436 YKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRH-KNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKS 514 (786)
Q Consensus 436 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (786)
...-+.|.+.-+.++..+|.+. .+|..--.++... .+..+-.+.+..++...| ++
T Consensus 56 ~E~S~RAl~LT~d~i~lNpAnY----TVW~yRr~iL~~l~~dL~~El~~l~eI~e~np--------------------KN 111 (318)
T KOG0530|consen 56 NEKSPRALQLTEDAIRLNPANY----TVWQYRRVILRHLMSDLNKELEYLDEIIEDNP--------------------KN 111 (318)
T ss_pred cccCHHHHHHHHHHHHhCcccc----hHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCc--------------------cc
Confidence 3445678888899999999998 8887766655443 467777888999998888 78
Q ss_pred HHHHHHHHHHHHHcCChH-HHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHH
Q 003918 515 LRLWTFYVDLEESLGNLE-STRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLS 593 (786)
Q Consensus 515 ~~~~~~~~~~~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~ 593 (786)
-++|...-.+....|++. +-++..+.++..+..+-.+|...-.+...-+.++.-+..-.+.++. +-.+-.+|.+-.
T Consensus 112 YQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~--Di~NNSAWN~Ry- 188 (318)
T KOG0530|consen 112 YQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEE--DIRNNSAWNQRY- 188 (318)
T ss_pred hhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHH--hhhccchhheee-
Confidence 899988877777888888 8889999999998888899999988888888899999999999886 566667887531
Q ss_pred HHHHHhCCC-----ChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHH
Q 003918 594 KFVKRYGKT-----KLERARELFENAVETAPADAVKPLYLQYAKLEED 636 (786)
Q Consensus 594 ~~~~~~~~~-----~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~ 636 (786)
++... ..| ..+.-..+..+.|...|+ +...|..+..++..
T Consensus 189 fvi~~-~~~~~~~~~le~El~yt~~~I~~vP~--NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 189 FVITN-TKGVISKAELERELNYTKDKILLVPN--NESAWNYLKGLLEL 233 (318)
T ss_pred EEEEe-ccCCccHHHHHHHHHHHHHHHHhCCC--CccHHHHHHHHHHh
Confidence 11111 112 134455677788888999 55788888887765
No 253
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.56 E-value=0.6 Score=46.27 Aligned_cols=153 Identities=8% Similarity=-0.085 Sum_probs=87.1
Q ss_pred CCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCchhhHHHHHHHH-HHHhcChh
Q 003918 600 GKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKA-VPNHEKLGMYEIYIAR-AAEIFGVP 677 (786)
Q Consensus 600 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~~~~~~~-~~~~~~~~ 677 (786)
+.|+..+|....++.++..|. +...+..--..+...|+...-+..+++.+-. +|+-|.+....+...+ ....|-|+
T Consensus 115 ~~g~~h~a~~~wdklL~d~Pt--Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPT--DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHhCch--hhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 446677777777777777776 4444444445555567777777777776655 5544444444444333 23456677
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCC--CHHHHHHHHHHHHHcCCHHHHHHH
Q 003918 678 KTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRS--DTEFWNRWHEFEVNHGNEDTFREM 755 (786)
Q Consensus 678 ~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~~--~~~~~~~~~~~~~~~G~~~~a~~~ 755 (786)
+|.+.-+++++. +|. +.-+.-..+.++...|+..++.+...+--..=+..+ -.-.|=++..++.+.+.++.|.++
T Consensus 193 dAEk~A~ralqi-N~~--D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 193 DAEKQADRALQI-NRF--DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred hHHHHHHhhccC-CCc--chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 777777777777 555 333444556666667777777776655332100000 011222345556666777777777
Q ss_pred HH
Q 003918 756 LR 757 (786)
Q Consensus 756 ~~ 757 (786)
+.
T Consensus 270 yD 271 (491)
T KOG2610|consen 270 YD 271 (491)
T ss_pred HH
Confidence 64
No 254
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.54 E-value=0.15 Score=55.56 Aligned_cols=173 Identities=12% Similarity=0.026 Sum_probs=109.4
Q ss_pred hhhcCCCCHHHHHHHHHhh--cCCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHH----------HcCChhHHHH
Q 003918 377 LLRQNPHNVEQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYE----------TYKDIANARV 444 (786)
Q Consensus 377 ~l~~~p~~~~~~~~~~~~~--~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~----------~~~~~~~A~~ 444 (786)
++..-|... .....+. .|+.+.+++.+.++.+..+- +.+.+-..+..+|. ...+.+.|.+
T Consensus 183 ~lSlLPp~~---~kll~~vGF~gdR~~GL~~L~~~~~~~~i-----~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~ 254 (468)
T PF10300_consen 183 VLSLLPPKV---LKLLSFVGFSGDRELGLRLLWEASKSENI-----RSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEE 254 (468)
T ss_pred HHHhCCHHH---HHHHhhcCcCCcHHHHHHHHHHHhccCCc-----chHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHH
Confidence 355555543 2333333 38999999999998853221 22222222211111 2345678999
Q ss_pred HHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHH
Q 003918 445 IFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDL 524 (786)
Q Consensus 445 ~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (786)
+++......|+.. -....-|.++...|+.++|++.|++++..... ++. -....+..++.+
T Consensus 255 lL~~~~~~yP~s~----lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~---~~Q-------------l~~l~~~El~w~ 314 (468)
T PF10300_consen 255 LLEEMLKRYPNSA----LFLFFEGRLERLKGNLEEAIESFERAIESQSE---WKQ-------------LHHLCYFELAWC 314 (468)
T ss_pred HHHHHHHhCCCcH----HHHHHHHHHHHHhcCHHHHHHHHHHhccchhh---HHh-------------HHHHHHHHHHHH
Confidence 9999999999885 55566688888999999999999988853330 000 112345566777
Q ss_pred HHHcCChHHHHHHHHHHHhhccCCHHHHH-HHHHHHHHcccH-------HHHHHHHHHHHh
Q 003918 525 EESLGNLESTRAVYERILDLRIATPQIII-NYALLLEEHKYF-------EDAFRVYERGVK 577 (786)
Q Consensus 525 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~-~~~~~~~~~g~~-------~~A~~~~~~al~ 577 (786)
+..++++++|...|.+..+.+..+...|. ..|.++...|+. ++|.+.|.++-.
T Consensus 315 ~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 315 HMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 77788899999999888887665544433 335667777777 555555555544
No 255
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.49 E-value=0.0069 Score=38.53 Aligned_cols=29 Identities=17% Similarity=0.314 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 003918 550 QIIINYALLLEEHKYFEDAFRVYERGVKI 578 (786)
Q Consensus 550 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 578 (786)
.+|..+|.++...|++++|+..|++++++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 34555555555555556666666655555
No 256
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.034 Score=52.12 Aligned_cols=83 Identities=18% Similarity=0.162 Sum_probs=44.9
Q ss_pred CChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHH
Q 003918 437 KDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLR 516 (786)
Q Consensus 437 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (786)
..++.|+..|.+++.++|..+ ..|..-+..+++.++++.+..--+++++..| +.+.
T Consensus 24 k~y~~ai~~y~raI~~nP~~~----~Y~tnralchlk~~~~~~v~~dcrralql~~--------------------N~vk 79 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVA----SYYTNRALCHLKLKHWEPVEEDCRRALQLDP--------------------NLVK 79 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcc----hhhhhHHHHHHHhhhhhhhhhhHHHHHhcCh--------------------HHHH
Confidence 345555555555555555554 5555555555555555555555555555555 3444
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003918 517 LWTFYVDLEESLGNLESTRAVYERILD 543 (786)
Q Consensus 517 ~~~~~~~~~~~~g~~~~A~~~~~~al~ 543 (786)
..+.++.+......++.|+..+.++..
T Consensus 80 ~h~flg~~~l~s~~~~eaI~~Lqra~s 106 (284)
T KOG4642|consen 80 AHYFLGQWLLQSKGYDEAIKVLQRAYS 106 (284)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 445555555555555555555555533
No 257
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.43 E-value=1.3 Score=44.91 Aligned_cols=139 Identities=14% Similarity=0.102 Sum_probs=87.0
Q ss_pred HHcCChhHHHHHHHHHHh----ccCCChhhHHHHHHHHHHHHHhcc-CHHHHHHHHHHHhcCCchHHhhhhhccCChhHH
Q 003918 434 ETYKDIANARVIFDKAVQ----VNYKTVDHLASIWCEWAEMELRHK-NFKGALELMRRATAEPSVEVRRRVAADGNEPVQ 508 (786)
Q Consensus 434 ~~~~~~~~A~~~~~~al~----~~p~~~~~~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 508 (786)
.+.|+++.|..+|.|+-. .+|+....++.+++..|.-....+ +++.|...++++.+..... .+.+....
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~----~~~~~~~~-- 77 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKP----GKMDKLSP-- 77 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhh----hhccccCC--
Confidence 467899999999998755 346566667788888888888888 9999999999998763200 00000000
Q ss_pred HHhhhcHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 003918 509 MKLHKSLRLWTFYVDLEESLGN---LESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKI 578 (786)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 578 (786)
....-...+...++..+...+. .++|..+.+.+-...|+.+.++.....+..+.++.+.+.+.+.+++..
T Consensus 78 ~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 78 DGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred cHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 0000112344455555555543 344555555555566776776666666665567777777777777775
No 258
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.41 E-value=0.0081 Score=38.16 Aligned_cols=29 Identities=10% Similarity=0.244 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 003918 550 QIIINYALLLEEHKYFEDAFRVYERGVKI 578 (786)
Q Consensus 550 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 578 (786)
.+|..+|.++...|++++|++.|++++.+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34445555555555555555555555554
No 259
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.39 E-value=1.7 Score=45.91 Aligned_cols=154 Identities=15% Similarity=0.185 Sum_probs=93.7
Q ss_pred CChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc-
Q 003918 582 PHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADA--VKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHE- 658 (786)
Q Consensus 582 p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~- 658 (786)
......|..++.... ..|.++.|...+.++....+... .+.+.+..+.+....|+..+|+..++..+.......
T Consensus 143 ~~~~~~~l~~a~~aR---k~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~ 219 (352)
T PF02259_consen 143 EELAETWLKFAKLAR---KAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNI 219 (352)
T ss_pred hHHHHHHHHHHHHHH---HCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc
Confidence 345567877654433 44789999999998887653311 356778889999999999999999988887322211
Q ss_pred hhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHc------CChHHHHHHHHHHHccCCCCCC
Q 003918 659 KLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSL------GEIDRARGIYVFASQFADPRSD 732 (786)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~------g~~~~A~~~~~~al~~~~p~~~ 732 (786)
........ ..+-...........+.. ........+++.+|.+.... +..+.+...|..+++. +|. .
T Consensus 220 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~-~~~-~ 291 (352)
T PF02259_consen 220 DSISNAEL-----KSGLLESLEVISSTNLDK-ESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKL-DPS-W 291 (352)
T ss_pred ccccHHHH-----hhccccccccccccchhh-hhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHh-Chh-H
Confidence 10000000 000000000000000000 11111356778888887777 8899999999999997 677 4
Q ss_pred HHHHHHHHHHHHHc
Q 003918 733 TEFWNRWHEFEVNH 746 (786)
Q Consensus 733 ~~~~~~~~~~~~~~ 746 (786)
...|..|+.++.+.
T Consensus 292 ~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 292 EKAWHSWALFNDKL 305 (352)
T ss_pred HHHHHHHHHHHHHH
Confidence 77888888876665
No 260
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=96.39 E-value=0.0061 Score=37.18 Aligned_cols=29 Identities=31% Similarity=0.462 Sum_probs=26.7
Q ss_pred ChhhHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 003918 41 PFKKRFVIYERALKALPGSYKLWHAYLIER 70 (786)
Q Consensus 41 ~~~~~~~~~~~al~~~P~~~~~w~~~~~~~ 70 (786)
++++|+.+|+|.+...| ++..|+.|+.++
T Consensus 2 E~dRAR~IyeR~v~~hp-~~k~WikyAkFE 30 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHP-EVKNWIKYAKFE 30 (32)
T ss_pred hHHHHHHHHHHHHHhCC-CchHHHHHHHhh
Confidence 67899999999999998 699999999986
No 261
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.38 E-value=0.41 Score=52.30 Aligned_cols=146 Identities=17% Similarity=0.144 Sum_probs=73.7
Q ss_pred HHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHH---HHHH-HH-HHH-H--hc
Q 003918 403 ILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLAS---IWCE-WA-EME-L--RH 474 (786)
Q Consensus 403 ~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~---~~~~-~a-~~~-~--~~ 474 (786)
.-.|.-.+.-+|| -...+..+.-=.||=+.+.+.+.++.+...-.. .++. +++. .. .+. . ..
T Consensus 177 ~G~f~L~lSlLPp---------~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~-~la~L~LL~y~~~~~~~~~~~~~~ 246 (468)
T PF10300_consen 177 FGLFNLVLSLLPP---------KVLKLLSFVGFSGDRELGLRLLWEASKSENIRS-PLAALVLLWYHLVVPSFLGIDGED 246 (468)
T ss_pred HHHHHHHHHhCCH---------HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHHHcCCcccC
Confidence 4445555544444 123333333345777777777777765221111 1111 0000 00 011 1 23
Q ss_pred cCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHH----
Q 003918 475 KNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQ---- 550 (786)
Q Consensus 475 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~---- 550 (786)
.+.+.|.+++.......| ++.-.....|.++...|+.++|+..|++++.....-++
T Consensus 247 ~~~~~a~~lL~~~~~~yP--------------------~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l 306 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYP--------------------NSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHL 306 (468)
T ss_pred CCHHHHHHHHHHHHHhCC--------------------CcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHH
Confidence 455666666666666666 44444455566666666677777766666643222221
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 003918 551 IIINYALLLEEHKYFEDAFRVYERGVKI 578 (786)
Q Consensus 551 ~~~~~~~~~~~~g~~~~A~~~~~~al~~ 578 (786)
.+..++.++.-++++++|...|.+..+.
T Consensus 307 ~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 307 CYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 3445555566666666666666666653
No 262
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.37 E-value=0.28 Score=44.11 Aligned_cols=63 Identities=19% Similarity=0.133 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 003918 516 RLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKI 578 (786)
Q Consensus 516 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 578 (786)
.+...++..+...|+++.|...+++++..+|.+..+|..+..++...|+...|+..|+++...
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 455566777778899999999999999999999999999999999999999999999888765
No 263
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.23 E-value=5.5 Score=50.33 Aligned_cols=281 Identities=15% Similarity=0.186 Sum_probs=151.7
Q ss_pred CcHHHHHHHHHHHHHcCChhHHHHHHHHHHh---ccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhh
Q 003918 421 KPHTLWVAFAKLYETYKDIANARVIFDKAVQ---VNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRR 497 (786)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 497 (786)
.+.+.|......-....+..+-+-.+++++- .+|+........|...|++....|+++.|...+-+|.+..+
T Consensus 1627 ~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~----- 1701 (2382)
T KOG0890|consen 1627 NNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRL----- 1701 (2382)
T ss_pred ccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc-----
Confidence 3345666554443333334444555555432 23333344567888888888888888888877766665433
Q ss_pred hhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhc-cC----------C------HHHHHHHHHHHH
Q 003918 498 RVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLR-IA----------T------PQIIINYALLLE 560 (786)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~----------~------~~~~~~~~~~~~ 560 (786)
+.+....+.++...|+...|...++..++.+ |+ . ..+.+.++.+..
T Consensus 1702 -----------------~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~ 1764 (2382)
T KOG0890|consen 1702 -----------------PEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLE 1764 (2382)
T ss_pred -----------------chHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHH
Confidence 3667777888888888888888888888652 22 0 113344455555
Q ss_pred HcccH--HHHHHHHHHHHhhcCCCChHHHHH---HHHHHHHHHh------CCCChHH---HHHHHHHHHhhCCccC----
Q 003918 561 EHKYF--EDAFRVYERGVKIFKYPHVKDIWV---TYLSKFVKRY------GKTKLER---ARELFENAVETAPADA---- 622 (786)
Q Consensus 561 ~~g~~--~~A~~~~~~al~~~~~p~~~~~~~---~~~~~~~~~~------~~~~~~~---A~~~~~~al~~~p~~~---- 622 (786)
..|++ +..++.|..+++.. |....-++ .|.+.++... ..|.+.. ++-.|.+++..+-...
T Consensus 1765 es~n~~s~~ilk~Y~~~~ail--~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~yg~~~iyqsm 1842 (2382)
T KOG0890|consen 1765 ESGNFESKDILKYYHDAKAIL--PEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYYGNQHLYQSM 1842 (2382)
T ss_pred HhcchhHHHHHHHHHHHHHHc--ccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhcchhHHHhh
Confidence 66654 35677777887773 42211111 1222222211 1233333 4555567766532210
Q ss_pred --cHHHHHHHHHHHHH---c-------CCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHh-cC-hhHHHHHHHHHHH
Q 003918 623 --VKPLYLQYAKLEED---Y-------GLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEI-FG-VPKTREIYEQAIE 688 (786)
Q Consensus 623 --~~~~~~~~a~~~~~---~-------g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~-~~-~~~A~~~~~~al~ 688 (786)
-.++|+.++-.... . ++...--+..+.++...|...-+..+..++...... .+ +.--+++..+.+.
T Consensus 1843 PRllTLWLD~~t~~~~~ek~~r~ei~s~~~~~in~~i~~~~~~lp~Y~f~ta~sQLlSRicH~~~dV~~vl~~II~~l~~ 1922 (2382)
T KOG0890|consen 1843 PRLLTLWLDIGTHISSVEKAPRGEIVSKNLKLINSLIEEALEHLPTYQFYTAYSQLLSRICHPNQDVARVLKHIIAKLVL 1922 (2382)
T ss_pred hHHHHHHHhhcchhcccccCChhhhhhhhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence 34577765443322 2 233344456677777777533233333333321111 11 1223455555555
Q ss_pred hcCCChhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHccCCCC
Q 003918 689 SGLPDKDVKAMCLKYAELEKS-LGEIDRARGIYVFASQFADPR 730 (786)
Q Consensus 689 ~~~p~~~~~~~~~~~~~~~~~-~g~~~~A~~~~~~al~~~~p~ 730 (786)
. .|. ...|...+-+-.. ..+..++.+++.++... .++
T Consensus 1923 ~-YPq---q~lW~~~a~~kS~~p~R~~R~keIL~k~~~~-~~~ 1960 (2382)
T KOG0890|consen 1923 A-YPQ---QTLWQSAALSKSNVPSRVERCKEILTKSRRQ-KPD 1960 (2382)
T ss_pred h-Cch---HHHHHHHHHHhcccHHHHHHHHHHHHHHHhc-Ccc
Confidence 6 786 3477766554322 35678899999988876 455
No 264
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.21 E-value=0.47 Score=45.47 Aligned_cols=217 Identities=14% Similarity=0.197 Sum_probs=131.6
Q ss_pred cCChHHHHHHHHHHHhhccCCH----HHHHHHHHHHHHcccHHHHHHHHHHHHhhcCC----CChHHHHHHHHHHHHHHh
Q 003918 528 LGNLESTRAVYERILDLRIATP----QIIINYALLLEEHKYFEDAFRVYERGVKIFKY----PHVKDIWVTYLSKFVKRY 599 (786)
Q Consensus 528 ~g~~~~A~~~~~~al~~~p~~~----~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~----p~~~~~~~~~~~~~~~~~ 599 (786)
...+++|+..|++.++..|.-. .++-.+..+..+.|++++.+..|.+.+...+. ..+.......++...
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiS--- 116 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIS--- 116 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHh---
Confidence 3488999999999999977653 46778889999999999999988887764211 111122222232222
Q ss_pred CCCChHHHHHHHHHHHhhCCccCcHHHHH----HHHHHHHHcCCHHHHHHHHHHHHhcCCCCch----------hhHHHH
Q 003918 600 GKTKLERARELFENAVETAPADAVKPLYL----QYAKLEEDYGLAKRAMKVYDQATKAVPNHEK----------LGMYEI 665 (786)
Q Consensus 600 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~----~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~----------~~~~~~ 665 (786)
...+.+-....|+..+....+..+..+|+ .++.++...|.+.+-.+++++.-+.+..... ..++..
T Consensus 117 tS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAl 196 (440)
T KOG1464|consen 117 TSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYAL 196 (440)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhh
Confidence 12445666666766665433222344665 5888888888888888888777666553211 123333
Q ss_pred HHHHHHHhcChhHHHHHHHHHHHh--cCCChhHHHHHHHH-HHHHHHcCChHHHHHHHHHHHccCCCCCCH-----HHHH
Q 003918 666 YIARAAEIFGVPKTREIYEQAIES--GLPDKDVKAMCLKY-AELEKSLGEIDRARGIYVFASQFADPRSDT-----EFWN 737 (786)
Q Consensus 666 ~~~~~~~~~~~~~A~~~~~~al~~--~~p~~~~~~~~~~~-~~~~~~~g~~~~A~~~~~~al~~~~p~~~~-----~~~~ 737 (786)
-+.++....+-.+-..+|++++.. ..|.+....+.... |.++.+-|.+++|..-|=.|.+..+...++ .-|.
T Consensus 197 EIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYL 276 (440)
T KOG1464|consen 197 EIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYL 276 (440)
T ss_pred HhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHH
Confidence 344455556667778899999875 24443222222222 456777889998887777776652221111 2344
Q ss_pred HHHHHHHHcC
Q 003918 738 RWHEFEVNHG 747 (786)
Q Consensus 738 ~~~~~~~~~G 747 (786)
.+.++.++.|
T Consensus 277 VLANMLmkS~ 286 (440)
T KOG1464|consen 277 VLANMLMKSG 286 (440)
T ss_pred HHHHHHHHcC
Confidence 4555565554
No 265
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.19 E-value=0.07 Score=48.67 Aligned_cols=100 Identities=18% Similarity=0.169 Sum_probs=66.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCCh
Q 003918 426 WVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNE 505 (786)
Q Consensus 426 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 505 (786)
-+.+|..+...|++++|...++.++....+.. -...+-..++.+..+.|.+++|...++......=
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~-lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w------------- 157 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQTKDEN-LKALAALRLARVQLQQKKADAALKTLDTIKEESW------------- 157 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccchhHH-HHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-------------
Confidence 35667777788888888888888886433321 1224456677788888888888887765432211
Q ss_pred hHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccC
Q 003918 506 PVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIA 547 (786)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 547 (786)
.+......|+++...|+.++|+..|+++++.+++
T Consensus 158 --------~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 158 --------AAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred --------HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 1233344577888888888888888888887543
No 266
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.17 E-value=3.3 Score=47.08 Aligned_cols=319 Identities=15% Similarity=0.039 Sum_probs=171.5
Q ss_pred CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhh
Q 003918 421 KPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVA 500 (786)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 500 (786)
+...++..-+..+...|.+++|+..--++ .++.-...+....+.-....++..- +.+.+..-|.++
T Consensus 345 ~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA-----~d~~~aa~lle~~~~~L~~~~~lsl----l~~~~~~lP~~~----- 410 (894)
T COG2909 345 RLKELHRAAAEWFAEHGLPSEAIDHALAA-----GDPEMAADLLEQLEWQLFNGSELSL----LLAWLKALPAEL----- 410 (894)
T ss_pred chhHHHHHHHHHHHhCCChHHHHHHHHhC-----CCHHHHHHHHHhhhhhhhcccchHH----HHHHHHhCCHHH-----
Confidence 45677888888888899988888764332 2222222333333222233334332 233333333111
Q ss_pred ccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccC--CH-------HHHHHHHHHHHHcccHHHHHHH
Q 003918 501 ADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIA--TP-------QIIINYALLLEEHKYFEDAFRV 571 (786)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~~-------~~~~~~~~~~~~~g~~~~A~~~ 571 (786)
+..++.+...++-.....+++++|..+..++-..-|. .. +.-.-.+.+....|+++.|.+.
T Consensus 411 ----------l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~l 480 (894)
T COG2909 411 ----------LASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDL 480 (894)
T ss_pred ----------HhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 1145666666777777788999999999888776443 11 1222336667788999999999
Q ss_pred HHHHHhhcCCCChHHHHHH--HHHHHHHHhCCCChHHHHHHHHHHHhhCCcc--CcHHHHHHH--HHHHHHcCCHHHH--
Q 003918 572 YERGVKIFKYPHVKDIWVT--YLSKFVKRYGKTKLERARELFENAVETAPAD--AVKPLYLQY--AKLEEDYGLAKRA-- 643 (786)
Q Consensus 572 ~~~al~~~~~p~~~~~~~~--~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~~--a~~~~~~g~~~~A-- 643 (786)
-+.++... |.+...-.. +.......+-.|++++|+.+..++.+..... ....+|..+ +.+...+|+...+
T Consensus 481 ar~al~~L--~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~ 558 (894)
T COG2909 481 ARLALVQL--PEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQ 558 (894)
T ss_pred HHHHHHhc--ccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99999974 443211110 0001111123488999999999988873321 124455544 4555667843332
Q ss_pred HHHHHH----HHhcCCCCchhhHHHHHHHHHHH----hcChhHHHHHHHHHHHhcCCChhHHHH-HHHHHHHHHHcCChH
Q 003918 644 MKVYDQ----ATKAVPNHEKLGMYEIYIARAAE----IFGVPKTREIYEQAIESGLPDKDVKAM-CLKYAELEKSLGEID 714 (786)
Q Consensus 644 ~~~~~~----~l~~~p~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~~p~~~~~~~-~~~~~~~~~~~g~~~ 714 (786)
...|.. -+...|.+.. ........... .+.-.+++.-++-.... .|.+..... .+.++.++...|+.+
T Consensus 559 ~~~~~~~~~q~l~q~~~~~f--~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~-~~~~~~~~~~~~~LA~l~~~~Gdl~ 635 (894)
T COG2909 559 EKAFNLIREQHLEQKPRHEF--LVRIRAQLLRAWLRLDLAEAEARLGIEVGSVY-TPQPLLSRLALSMLAELEFLRGDLD 635 (894)
T ss_pred HHHHHHHHHHHhhhcccchh--HHHHHHHHHHHHHHHhhhhHHhhhcchhhhhc-ccchhHHHHHHHHHHHHHHhcCCHH
Confidence 222222 2222332211 11111111111 12233344433333333 444332222 236788999999999
Q ss_pred HHHHHHHHHHccC-CCCCCHHHHHHHH-----HHHHHcCCHHHHHHHHHHHHHHHhhhhhhHH
Q 003918 715 RARGIYVFASQFA-DPRSDTEFWNRWH-----EFEVNHGNEDTFREMLRIKRSVSASYSQVIY 771 (786)
Q Consensus 715 ~A~~~~~~al~~~-~p~~~~~~~~~~~-----~~~~~~G~~~~a~~~~~~~~~~~~~~~~~~~ 771 (786)
+|....+...... ++. ....|.... .+....||...+...+ .+..+.....-+|
T Consensus 636 ~A~~~l~~~~~l~~~~~-~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l--~~s~~~~~~~~~~ 695 (894)
T COG2909 636 KALAQLDELERLLLNGQ-YHVDYLAAAYKVKLILWLAQGDKELAAEWL--LKSGDPDKANAHF 695 (894)
T ss_pred HHHHHHHHHHHHhcCCC-CCchHHHHHHHhhHHHhcccCCHHHHHHHH--HhccCchhhhhhc
Confidence 9999888876541 222 233444432 3455679998888877 4544444444444
No 267
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.37 Score=47.26 Aligned_cols=143 Identities=16% Similarity=0.141 Sum_probs=107.2
Q ss_pred CCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhH---HHHHHHHHHHhcCh
Q 003918 600 GKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGM---YEIYIARAAEIFGV 676 (786)
Q Consensus 600 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~---~~~~~~~~~~~~~~ 676 (786)
..+++.+|...|..++...|. ...+...++.++...|+.+.|..++.. .|.+....- ....+....+..+.
T Consensus 146 ~~e~~~~a~~~~~~al~~~~~--~~~~~~~la~~~l~~g~~e~A~~iL~~----lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAAPE--NSEAKLLLAECLLAAGDVEAAQAILAA----LPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hccchhhHHHHHHHHHHhCcc--cchHHHHHHHHHHHcCChHHHHHHHHh----CcccchhhHHHHHHHHHHHHHHHhcC
Confidence 458899999999999999998 467889999999999999999888776 444332222 23355555555566
Q ss_pred hHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003918 677 PKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTF 752 (786)
Q Consensus 677 ~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~G~~~~a 752 (786)
++...+-.+ +.. .|+ +....+.++..+...|+.+.|.+.+-..+.......+...-..++.+....|..+-+
T Consensus 220 ~~~~~l~~~-~aa-dPd--d~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 220 PEIQDLQRR-LAA-DPD--DVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred CCHHHHHHH-HHh-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHH
Confidence 655544333 445 787 466899999999999999999999988888744444577888899988888855544
No 268
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.02 E-value=0.011 Score=61.22 Aligned_cols=106 Identities=16% Similarity=0.121 Sum_probs=85.4
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHH
Q 003918 429 FAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQ 508 (786)
Q Consensus 429 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 508 (786)
-+.-....+.|+.|+..|.++++++|++. .++-.-+..+.+.+++..|+.-+.++++..|
T Consensus 10 ean~~l~~~~fd~avdlysKaI~ldpnca----~~~anRa~a~lK~e~~~~Al~Da~kaie~dP---------------- 69 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIELDPNCA----IYFANRALAHLKVESFGGALHDALKAIELDP---------------- 69 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhcCCcce----eeechhhhhheeechhhhHHHHHHhhhhcCc----------------
Confidence 34455667788899999999999999886 6666677777888899999988999998888
Q ss_pred HHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHH
Q 003918 509 MKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALL 558 (786)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 558 (786)
.....|...|......+.+.+|...|+......|+++.+.-.+..+
T Consensus 70 ----~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 70 ----TYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred ----hhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 5667777778888888888999999999999999988876666544
No 269
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=95.84 E-value=0.11 Score=44.41 Aligned_cols=110 Identities=17% Similarity=0.232 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHh---------cCCCHHHHHHHHHH
Q 003918 44 KRFVIYERALKA---LPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVT---------MHKMPRIWIMYLET 111 (786)
Q Consensus 44 ~~~~~~~~al~~---~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---------~p~~~~~w~~~~~~ 111 (786)
..+..|++.+.. ..+=...|..|+.+....-+.. +.-..-..+++++++. ||.-..+|+.|++.
T Consensus 3 ~~r~~~e~~i~~~~~~dDPL~~w~~yI~W~~~~~p~g----~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~ 78 (125)
T smart00777 3 QQRQAFEQELQDLYEGDDPLDLWLRYIKWTEENYPQG----GKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADN 78 (125)
T ss_pred HHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCCCC----CchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHh
Confidence 345567777732 1222688999999876532211 2234456777787775 35556789999987
Q ss_pred HHcCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHhcCCChHHHHHHHHH
Q 003918 112 LTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRR 164 (786)
Q Consensus 112 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~w~~~~~~~~~~~~~~~~A~~~~~~ 164 (786)
. +....+|.......-....+.+|..++.++...|++ .+|..+|+.
T Consensus 79 ~------~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~-~~A~~iy~~ 124 (125)
T smart00777 79 C------DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRY-KKADEVYQL 124 (125)
T ss_pred c------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCH-HHHHHHHHc
Confidence 4 346778888877666555788888999999999999 999999874
No 270
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.79 E-value=8.5 Score=48.77 Aligned_cols=290 Identities=14% Similarity=0.177 Sum_probs=165.5
Q ss_pred HHHHHHHHhhcC--CchhHHHHHHHHHhcc--CCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHH
Q 003918 386 EQWHRRVKIFEG--NPTKQILTYTEAVRTV--DPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLA 461 (786)
Q Consensus 386 ~~~~~~~~~~~~--~~~~a~~~~~~al~~~--~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 461 (786)
+.|..+.+.... ...+-+-.+.+++... +| +........|...|++....|.++.|....-.|.+..+ +
T Consensus 1630 d~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~-~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~---- 1702 (2382)
T KOG0890|consen 1630 DNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRS-NLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRL--P---- 1702 (2382)
T ss_pred hhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccc-cccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--c----
Confidence 566666555542 2333344444444322 21 12235678999999999999999999999988887653 2
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHhcCC-chHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCC--hHHHHHHH
Q 003918 462 SIWCEWAEMELRHKNFKGALELMRRATAEP-SVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGN--LESTRAVY 538 (786)
Q Consensus 462 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~A~~~~ 538 (786)
.++...|..+.+.|+...|+.+++..++.. |+..... -+.+...-.. .-..+...++.+....|+ .......|
T Consensus 1703 ~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~--~~~p~~~n~~--i~~~~~L~~~~~~~es~n~~s~~ilk~Y 1778 (2382)
T KOG0890|consen 1703 EIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPY--TDTPQSVNLL--IFKKAKLKITKYLEESGNFESKDILKYY 1778 (2382)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCc--cccchhhhhh--hhhhHHHHHHHHHHHhcchhHHHHHHHH
Confidence 889999999999999999999999999542 2100000 0000000000 011233444455455554 45567899
Q ss_pred HHHHhhccCCHHHHHHHHHHH------------HHcccHHH---HHHHHHHHHhhcC------CCChHHHHHHHHHHHHH
Q 003918 539 ERILDLRIATPQIIINYALLL------------EEHKYFED---AFRVYERGVKIFK------YPHVKDIWVTYLSKFVK 597 (786)
Q Consensus 539 ~~al~~~p~~~~~~~~~~~~~------------~~~g~~~~---A~~~~~~al~~~~------~p~~~~~~~~~~~~~~~ 597 (786)
.++.++.|....-++.+|.+| ++.|++.. ++-.|.+++.... -|.-..+|..++.....
T Consensus 1779 ~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~yg~~~iyqsmPRllTLWLD~~t~~~~ 1858 (2382)
T KOG0890|consen 1779 HDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYYGNQHLYQSMPRLLTLWLDIGTHISS 1858 (2382)
T ss_pred HHHHHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhcchhHHHhhhHHHHHHHhhcchhcc
Confidence 999999986655555554333 23455555 4445557766421 26666788886544332
Q ss_pred --HhCCC-----ChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHH-cCCHHHHHHHHHH----HHhcCCCCchhhHHHH
Q 003918 598 --RYGKT-----KLERARELFENAVETAPADAVKPLYLQYAKLEED-YGLAKRAMKVYDQ----ATKAVPNHEKLGMYEI 665 (786)
Q Consensus 598 --~~~~~-----~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~-~g~~~~A~~~~~~----~l~~~p~~~~~~~~~~ 665 (786)
..+.+ +........+.+++..|. ...+..|..+..+ ....++...+... .+...|. -.+|..
T Consensus 1859 ~ek~~r~ei~s~~~~~in~~i~~~~~~lp~---Y~f~ta~sQLlSRicH~~~dV~~vl~~II~~l~~~YPq---q~lW~~ 1932 (2382)
T KOG0890|consen 1859 VEKAPRGEIVSKNLKLINSLIEEALEHLPT---YQFYTAYSQLLSRICHPNQDVARVLKHIIAKLVLAYPQ---QTLWQS 1932 (2382)
T ss_pred cccCChhhhhhhhHHHHHHHHHHHHHhCcc---hHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCch---HHHHHH
Confidence 11111 234455566677777786 4566678888777 3344444444444 4445553 233333
Q ss_pred HHHH-HHHhcChhHHHHHHHHHHHhcCCC
Q 003918 666 YIAR-AAEIFGVPKTREIYEQAIESGLPD 693 (786)
Q Consensus 666 ~~~~-~~~~~~~~~A~~~~~~al~~~~p~ 693 (786)
.... ...-.....+.+++.++... .++
T Consensus 1933 ~a~~kS~~p~R~~R~keIL~k~~~~-~~~ 1960 (2382)
T KOG0890|consen 1933 AALSKSNVPSRVERCKEILTKSRRQ-KPD 1960 (2382)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHhc-Ccc
Confidence 2221 00112345667777777666 554
No 271
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.78 E-value=0.018 Score=36.60 Aligned_cols=32 Identities=28% Similarity=0.464 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhccCC
Q 003918 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYK 455 (786)
Q Consensus 424 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 455 (786)
.+|..+|.++...|++++|...|+++++.+|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 47889999999999999999999999998884
No 272
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.77 E-value=0.24 Score=44.53 Aligned_cols=63 Identities=22% Similarity=0.229 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003918 462 SIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERI 541 (786)
Q Consensus 462 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 541 (786)
.+...++..+...|++++|...+++++...| .+..+|..+..++...|+...|...|++.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP--------------------~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDP--------------------YDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST--------------------T-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCC--------------------CCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 5556677778889999999999999999999 78899999999999999999999999988
Q ss_pred Hhh
Q 003918 542 LDL 544 (786)
Q Consensus 542 l~~ 544 (786)
...
T Consensus 123 ~~~ 125 (146)
T PF03704_consen 123 RRR 125 (146)
T ss_dssp HHH
T ss_pred HHH
Confidence 663
No 273
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.76 E-value=0.34 Score=50.69 Aligned_cols=163 Identities=15% Similarity=0.117 Sum_probs=87.3
Q ss_pred HhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHH---HH
Q 003918 450 VQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDL---EE 526 (786)
Q Consensus 450 l~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 526 (786)
+..+|-++ +..+.+++++.++|+.+.|.++++||+-..... +.....- -.
T Consensus 33 l~~~PyHi----dtLlqls~v~~~~gd~~~A~~lleRALf~~e~~-----------------------~~~~F~~~~~~~ 85 (360)
T PF04910_consen 33 LQKNPYHI----DTLLQLSEVYRQQGDHAQANDLLERALFAFERA-----------------------FHPSFSPFRSNL 85 (360)
T ss_pred HHHCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH-----------------------HHHHhhhhhccc
Confidence 45588887 778888999999999999999888887433300 0000000 00
Q ss_pred HcCChHHHHHHHHHHHhhccCCHH---HHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCC-hHHHHHHHHHHHHHHhCCC
Q 003918 527 SLGNLESTRAVYERILDLRIATPQ---IIINYALLLEEHKYFEDAFRVYERGVKIFKYPH-VKDIWVTYLSKFVKRYGKT 602 (786)
Q Consensus 527 ~~g~~~~A~~~~~~al~~~p~~~~---~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~-~~~~~~~~~~~~~~~~~~~ 602 (786)
..|. ++--| ..+.|-. +...+.....+.|-+..|++..+-.+.+ +|. ++-.-..+++.+..+ .+
T Consensus 86 ~~g~---~rL~~-----~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsL--dp~~DP~g~ll~ID~~ALr--s~ 153 (360)
T PF04910_consen 86 TSGN---CRLDY-----RRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSL--DPDEDPLGVLLFIDYYALR--SR 153 (360)
T ss_pred ccCc---cccCC-----ccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc--CCCCCcchhHHHHHHHHHh--cC
Confidence 0000 00000 0111222 2233444455555566666655555555 444 444333344444332 24
Q ss_pred ChHHHHHHHHHHHh--------hCCccCcHHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHhcCCC
Q 003918 603 KLERARELFENAVE--------TAPADAVKPLYLQYAKLEEDYGLA---------------KRAMKVYDQATKAVPN 656 (786)
Q Consensus 603 ~~~~A~~~~~~al~--------~~p~~~~~~~~~~~a~~~~~~g~~---------------~~A~~~~~~~l~~~p~ 656 (786)
+++--++.++.... ..|+ .-++.+-.+...++. +.|...+.+++...|.
T Consensus 154 ~y~~Li~~~~~~~~~~~~~~~~~lPn-----~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 154 QYQWLIDFSESPLAKCYRNWLSLLPN-----FAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred CHHHHHHHHHhHhhhhhhhhhhhCcc-----HHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 55555555554333 2343 445555555566666 8999999999998884
No 274
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.69 E-value=4.3 Score=44.56 Aligned_cols=167 Identities=16% Similarity=0.106 Sum_probs=95.0
Q ss_pred HHHHHcCChHHHHHHHHHHHhhcc--CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhC
Q 003918 523 DLEESLGNLESTRAVYERILDLRI--ATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYG 600 (786)
Q Consensus 523 ~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~ 600 (786)
.+..+.|++-...++++..-.-.. .-.++|.++|........+++|.+.|..+-.. .. ++..++..
T Consensus 768 elr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---e~-------~~ecly~l-- 835 (1189)
T KOG2041|consen 768 ELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---EN-------QIECLYRL-- 835 (1189)
T ss_pred HHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---Hh-------HHHHHHHH--
Confidence 344566676666666654332211 12468899999999888999999999876542 11 22223211
Q ss_pred CCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHH
Q 003918 601 KTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTR 680 (786)
Q Consensus 601 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~ 680 (786)
..++ -++.+....|+ +..+.-.+|++....|.-++|.+.|-+.- .|. . -+..+...++..+|.
T Consensus 836 -e~f~----~LE~la~~Lpe--~s~llp~~a~mf~svGMC~qAV~a~Lr~s--~pk---a-----Av~tCv~LnQW~~av 898 (1189)
T KOG2041|consen 836 -ELFG----ELEVLARTLPE--DSELLPVMADMFTSVGMCDQAVEAYLRRS--LPK---A-----AVHTCVELNQWGEAV 898 (1189)
T ss_pred -Hhhh----hHHHHHHhcCc--ccchHHHHHHHHHhhchHHHHHHHHHhcc--CcH---H-----HHHHHHHHHHHHHHH
Confidence 1232 24455566787 55788889999999999999998886632 221 1 111122344555555
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003918 681 EIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFA 723 (786)
Q Consensus 681 ~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 723 (786)
++-++.- .|. .....-..+.-+...++..+|++.+++|
T Consensus 899 elaq~~~---l~q--v~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 899 ELAQRFQ---LPQ--VQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred HHHHhcc---chh--HHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 5544421 333 1223333333344445666666666555
No 275
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=95.63 E-value=0.25 Score=42.26 Aligned_cols=45 Identities=18% Similarity=0.409 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 003918 677 PKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVF 722 (786)
Q Consensus 677 ~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 722 (786)
+..+++|......+.. ...+..|..+|..+...|++.+|.++|+.
T Consensus 80 ~dp~~if~~L~~~~IG-~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 80 DEPRELFQFLYSKGIG-TKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred CCHHHHHHHHHHCCcc-hhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 3456667766665322 23466777778888888888888888764
No 276
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=95.60 E-value=0.024 Score=34.64 Aligned_cols=29 Identities=21% Similarity=0.445 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 003918 83 EYETLNNTFERALVTMHKMPRIWIMYLETL 112 (786)
Q Consensus 83 ~~~~A~~~~~~al~~~p~~~~~w~~~~~~~ 112 (786)
.++.|+.+|+|.+..+| ++..|+.||.|+
T Consensus 2 E~dRAR~IyeR~v~~hp-~~k~WikyAkFE 30 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHP-EVKNWIKYAKFE 30 (32)
T ss_pred hHHHHHHHHHHHHHhCC-CchHHHHHHHhh
Confidence 35677888888887775 477788888775
No 277
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.54 E-value=2.1 Score=41.23 Aligned_cols=220 Identities=13% Similarity=0.145 Sum_probs=118.9
Q ss_pred hccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhc------c
Q 003918 473 RHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLR------I 546 (786)
Q Consensus 473 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~------p 546 (786)
+...+++|+.-|.+.+.+.+.. .. -.-.+....+.+...+|++++-...|.+.+..- .
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEK----ge------------WGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrN 102 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEK----GE------------WGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRN 102 (440)
T ss_pred cccCHHHHHHHHHHHHhccccc----ch------------hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcc
Confidence 3457788888888888776611 00 012334445566667788888888888777541 1
Q ss_pred CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHH----HHHHHHHhCCCChHHHHHHHH---HHHhhCC
Q 003918 547 ATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTY----LSKFVKRYGKTKLERARELFE---NAVETAP 619 (786)
Q Consensus 547 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~----~~~~~~~~~~~~~~~A~~~~~---~al~~~p 619 (786)
-+.........+-....+.+--...|+..++..++..+..+|+.- +..+. ..+++.+...++. +..+...
T Consensus 103 ySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~f---d~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 103 YSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYF---DRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred ccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhhe---eHHHHHHHHHHHHHHHHHhcccc
Confidence 122333444444444455555566676666655566666677531 11111 1133443333333 3333322
Q ss_pred ccC-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHH----HHHHHHHHHhcChhHHHHHHHHHHH
Q 003918 620 ADA-------VKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMY----EIYIARAAEIFGVPKTREIYEQAIE 688 (786)
Q Consensus 620 ~~~-------~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~----~~~~~~~~~~~~~~~A~~~~~~al~ 688 (786)
+.. -.++|..=+.+|..+.+-.+-..+|++++.....-|...+. .+-..++.+.|.+++|-.-|-.|.+
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHh
Confidence 211 13455555677777888888888899888654432222222 2222344566788888777777765
Q ss_pred h----cCCChhHHHHHHHHHHHHHHcC
Q 003918 689 S----GLPDKDVKAMCLKYAELEKSLG 711 (786)
Q Consensus 689 ~----~~p~~~~~~~~~~~~~~~~~~g 711 (786)
. |.|.....--|+-+++++.+.|
T Consensus 260 NYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 260 NYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred cccccCCcchhHHHHHHHHHHHHHHcC
Confidence 4 4444223334555667666654
No 278
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.51 E-value=1.4 Score=40.44 Aligned_cols=117 Identities=16% Similarity=0.046 Sum_probs=79.5
Q ss_pred HHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHH
Q 003918 444 VIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVD 523 (786)
Q Consensus 444 ~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (786)
...++....+|.+... ...-+.++.-+...|+++.|...++.++..+.++. -..-+-..++.
T Consensus 73 ~~~ekf~~~n~~t~Ya-~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~-----------------lk~l~~lRLAr 134 (207)
T COG2976 73 AAAEKFVQANGKTIYA-VLAALELAKAEVEANNLDKAEAQLKQALAQTKDEN-----------------LKALAALRLAR 134 (207)
T ss_pred HHHHHHHhhccccHHH-HHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHH-----------------HHHHHHHHHHH
Confidence 3334444445444211 12234456666778999999999999998776332 12234566788
Q ss_pred HHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhc
Q 003918 524 LEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIF 579 (786)
Q Consensus 524 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 579 (786)
+...+|.+++|...++..... .-.+..-...|.++...|+-++|+..|++++...
T Consensus 135 vq~q~~k~D~AL~~L~t~~~~-~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 135 VQLQQKKADAALKTLDTIKEE-SWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHhhhHHHHHHHHhccccc-cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 888999999999988765441 1122334456999999999999999999999974
No 279
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.45 E-value=6.7 Score=45.20 Aligned_cols=177 Identities=11% Similarity=0.134 Sum_probs=89.7
Q ss_pred CCHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhCCC
Q 003918 58 GSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVT---MHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPV 134 (786)
Q Consensus 58 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~w~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 134 (786)
.|+++|...+.-.- .--+.+.++++.. ...+|+--.--....+..+-..+-..++++.+- +|+
T Consensus 950 ~D~~LW~~VL~e~n-------------~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL-~~S 1015 (1666)
T KOG0985|consen 950 SDPDLWAKVLNEEN-------------PYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVL-DNS 1015 (1666)
T ss_pred cChHHHHHHHhccC-------------hHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhc-CCc
Confidence 48899988775321 1122344444432 124454444455666777777788888888764 333
Q ss_pred Cc--chhhHHHHHHHHHhcCCChHHHHHHHHHHHccCCCCHHHHHHHHHhcCCHHHHHHHHHHHhcCCCccccCCCcchH
Q 003918 135 TQ--HDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHR 212 (786)
Q Consensus 135 ~~--~~~~w~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 212 (786)
.. +..+-..++-... ..+. ...-...++. +.-+......+.+..+-+++|-.+|.+.-- +.+
T Consensus 1016 ~Fse~~nLQnLLiLtAi-kad~-trVm~YI~rL---dnyDa~~ia~iai~~~LyEEAF~ifkkf~~-----------n~~ 1079 (1666)
T KOG0985|consen 1016 VFSENRNLQNLLILTAI-KADR-TRVMEYINRL---DNYDAPDIAEIAIENQLYEEAFAIFKKFDM-----------NVS 1079 (1666)
T ss_pred ccccchhhhhhHHHHHh-hcCh-HHHHHHHHHh---ccCCchhHHHHHhhhhHHHHHHHHHHHhcc-----------cHH
Confidence 22 2232222221111 1223 2333333333 333334455666777778888877765421 011
Q ss_pred HHHHHHHHHhcccccccCCcHHHHHHhhhhccCchhHHHHHHHHHHHHhhccHHHHHHHHHHHh
Q 003918 213 LWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGM 276 (786)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 276 (786)
...-+++-.. .++..++-+- + .+ .+.+|..+|....+.|...+|+..|-++-
T Consensus 1080 A~~VLie~i~---------~ldRA~efAe-~-~n-~p~vWsqlakAQL~~~~v~dAieSyikad 1131 (1666)
T KOG0985|consen 1080 AIQVLIENIG---------SLDRAYEFAE-R-CN-EPAVWSQLAKAQLQGGLVKDAIESYIKAD 1131 (1666)
T ss_pred HHHHHHHHhh---------hHHHHHHHHH-h-hC-ChHHHHHHHHHHHhcCchHHHHHHHHhcC
Confidence 1111111110 0111111111 1 11 26789999999999999999998888765
No 280
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=95.42 E-value=6.5 Score=44.91 Aligned_cols=326 Identities=12% Similarity=0.081 Sum_probs=182.1
Q ss_pred hHHHHHHHHHHhccCCChhhHHHHHHHHHHHHH-hccCHHHHHHHHHHHhcCCch-HHhhhhhccCChhHHHHhhhcHHH
Q 003918 440 ANARVIFDKAVQVNYKTVDHLASIWCEWAEMEL-RHKNFKGALELMRRATAEPSV-EVRRRVAADGNEPVQMKLHKSLRL 517 (786)
Q Consensus 440 ~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 517 (786)
..|+++++-+++..+-.+..-..+.+.+|.++. ...+++.|...+.|++.+... .... -....
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d---------------~k~~~ 102 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTD---------------LKFRC 102 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH---------------HHHHH
Confidence 458888888885444444444578888999887 578999999999999866541 0000 01122
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhccCCH-HHHH---HHH--HHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHH-
Q 003918 518 WTFYVDLEESLGNLESTRAVYERILDLRIATP-QIII---NYA--LLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVT- 590 (786)
Q Consensus 518 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~---~~~--~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~- 590 (786)
-..++.++.+.+... |....++.++.....+ ..|. .+. .+....+++..|++.++.+......+.++.+...
T Consensus 103 ~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~ 181 (608)
T PF10345_consen 103 QFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLA 181 (608)
T ss_pred HHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHH
Confidence 234466776666655 9999999998754421 1222 222 2333347999999999999987422344444332
Q ss_pred -HHHHHHHHhCCCChHHHHHHHHHHHhhC------Ccc--CcHHHHHHHHHHHH--HcCCHHHHHHHH---HHHHhcCCC
Q 003918 591 -YLSKFVKRYGKTKLERARELFENAVETA------PAD--AVKPLYLQYAKLEE--DYGLAKRAMKVY---DQATKAVPN 656 (786)
Q Consensus 591 -~~~~~~~~~~~~~~~~A~~~~~~al~~~------p~~--~~~~~~~~~a~~~~--~~g~~~~A~~~~---~~~l~~~p~ 656 (786)
+... ..++..+..+.+.+..+++.... |.. +...+|..+.++.. ..|++..+...+ +..++....
T Consensus 182 ~l~~~-~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~ 260 (608)
T PF10345_consen 182 SLSEA-LLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKK 260 (608)
T ss_pred HHHHH-HHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhc
Confidence 1111 12234566777888887774431 111 12445555555433 367765555443 333322211
Q ss_pred Cc--------------------------hhhHH--------HHHH---HHHHHhcChhHHHHHHHHHHHh--c-C---CC
Q 003918 657 HE--------------------------KLGMY--------EIYI---ARAAEIFGVPKTREIYEQAIES--G-L---PD 693 (786)
Q Consensus 657 ~~--------------------------~~~~~--------~~~~---~~~~~~~~~~~A~~~~~~al~~--~-~---p~ 693 (786)
.+ ....| ..|. -.....+..++|.++++++++. + . |.
T Consensus 261 ~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~ 340 (608)
T PF10345_consen 261 SPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPS 340 (608)
T ss_pred CccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCC
Confidence 10 00000 0000 0112346666899999988874 0 1 10
Q ss_pred h--------hHHHHHHHH---------HHHHHHcCChHHHHHHHHHHHccCC--CC-----CCHHHHHHHHHHHHHcCCH
Q 003918 694 K--------DVKAMCLKY---------AELEKSLGEIDRARGIYVFASQFAD--PR-----SDTEFWNRWHEFEVNHGNE 749 (786)
Q Consensus 694 ~--------~~~~~~~~~---------~~~~~~~g~~~~A~~~~~~al~~~~--p~-----~~~~~~~~~~~~~~~~G~~ 749 (786)
. .....|+.. +....-.|++.+|......+.+.+. |+ ..+......+-+....|+.
T Consensus 341 ~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l 420 (608)
T PF10345_consen 341 APSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDL 420 (608)
T ss_pred CCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCH
Confidence 0 011223222 2223346899999998887776421 11 1244555566667778999
Q ss_pred HHHHHHHH-------HHHHHHhhhhhhHHHHHhhhhhhcC
Q 003918 750 DTFREMLR-------IKRSVSASYSQVIYFSFLLLLWIFL 782 (786)
Q Consensus 750 ~~a~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 782 (786)
+.|+..+. ..-.-+....++-.+++.-.+||..
T Consensus 421 ~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~ 460 (608)
T PF10345_consen 421 EAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQ 460 (608)
T ss_pred HHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhH
Confidence 99999995 2222233336666666666666653
No 281
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.39 E-value=0.036 Score=35.09 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhcc
Q 003918 517 LWTFYVDLEESLGNLESTRAVYERILDLRI 546 (786)
Q Consensus 517 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p 546 (786)
+|..+|.++...|++++|...|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 444555555555555555555555555544
No 282
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.35 E-value=0.02 Score=37.00 Aligned_cols=27 Identities=19% Similarity=0.418 Sum_probs=17.7
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhh
Q 003918 552 IINYALLLEEHKYFEDAFRVYERGVKI 578 (786)
Q Consensus 552 ~~~~~~~~~~~g~~~~A~~~~~~al~~ 578 (786)
|.++|.++.+.|++++|+++|++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 566777777777777777777775544
No 283
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.28 E-value=0.25 Score=39.75 Aligned_cols=78 Identities=17% Similarity=0.057 Sum_probs=58.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHhcCCChHHHHHHHHHHH
Q 003918 88 NNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYL 166 (786)
Q Consensus 88 ~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~w~~~~~~~~~~~~~~~~A~~~~~~~l 166 (786)
...++++++.+|+++.+...++..++..|+++.|...+-..+..+|.......-..++.+....|.- +....-|++-+
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~-~plv~~~RRkL 85 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG-DPLVSEYRRKL 85 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT--HHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC-ChHHHHHHHHH
Confidence 4678888999999999999999999999999999999999999998765556667777777777766 55555555443
No 284
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.13 E-value=1.6 Score=45.79 Aligned_cols=173 Identities=12% Similarity=0.056 Sum_probs=107.3
Q ss_pred HHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCC
Q 003918 540 RILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAP 619 (786)
Q Consensus 540 ~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 619 (786)
..+...|-+.+.++.++.++..+|+...|.++++||+-.++. .|......+......|. ++--|. .+
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~-----~~~~~F~~~~~~~~~g~---~rL~~~-----~~ 97 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFER-----AFHPSFSPFRSNLTSGN---CRLDYR-----RP 97 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-----HHHHHhhhhhcccccCc---cccCCc-----cc
Confidence 345778999999999999999999999999999999886421 12111100000001111 111111 11
Q ss_pred c-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCCh---h
Q 003918 620 A-DAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDK---D 695 (786)
Q Consensus 620 ~-~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~---~ 695 (786)
. ..-..+...++....+.|-+..|.++.+-.+..+|.++...+....=..+.+.++++=-+++++..... ...+ .
T Consensus 98 eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~-~~~~~~~~ 176 (360)
T PF04910_consen 98 ENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAK-CYRNWLSL 176 (360)
T ss_pred cchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhh-hhhhhhhh
Confidence 1 112345566778888899999999999999999998543333222222345677887777777765441 1111 0
Q ss_pred HHHHHHHHHHHHHHcCCh---------------HHHHHHHHHHHcc
Q 003918 696 VKAMCLKYAELEKSLGEI---------------DRARGIYVFASQF 726 (786)
Q Consensus 696 ~~~~~~~~~~~~~~~g~~---------------~~A~~~~~~al~~ 726 (786)
-|...+..+-++...++. ++|...+.+|+..
T Consensus 177 lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~ 222 (360)
T PF04910_consen 177 LPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILR 222 (360)
T ss_pred CccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHH
Confidence 123556666666666666 8899888888875
No 285
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=95.12 E-value=0.031 Score=58.11 Aligned_cols=119 Identities=15% Similarity=0.101 Sum_probs=97.8
Q ss_pred HHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHH
Q 003918 471 ELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQ 550 (786)
Q Consensus 471 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 550 (786)
....+.++.|+..|.++|.+.| +++.++...+..+.+.+++-.|+.-+.++++.+|....
T Consensus 14 ~l~~~~fd~avdlysKaI~ldp--------------------nca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K 73 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDP--------------------NCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIK 73 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCC--------------------cceeeechhhhhheeechhhhHHHHHHhhhhcCchhhh
Confidence 3567789999999999999999 77788888888888999999999999999999999999
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCC
Q 003918 551 IIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAP 619 (786)
Q Consensus 551 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 619 (786)
+|+..|......+.+.+|+..|+..... .|+++.+-..+ .-. +.--.+.-|++++-..+
T Consensus 74 ~Y~rrg~a~m~l~~~~~A~~~l~~~~~l--~Pnd~~~~r~~-~Ec-------~~~vs~~~fe~ai~~~~ 132 (476)
T KOG0376|consen 74 AYVRRGTAVMALGEFKKALLDLEKVKKL--APNDPDATRKI-DEC-------NKIVSEEKFEKAILTPE 132 (476)
T ss_pred eeeeccHHHHhHHHHHHHHHHHHHhhhc--CcCcHHHHHHH-HHH-------HHHHHHHhhhhcccCCc
Confidence 9999999999999999999999999997 68888765542 111 12234556777766544
No 286
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.05 E-value=0.49 Score=44.78 Aligned_cols=32 Identities=13% Similarity=0.138 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 003918 626 LYLQYAKLEEDYGLAKRAMKVYDQATKAVPNH 657 (786)
Q Consensus 626 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~ 657 (786)
++.+|+.++...|++=++.+.-...|...|++
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~~~n 263 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHHPGN 263 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcCCch
Confidence 34444444444444444444444444444443
No 287
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.01 E-value=5.6 Score=41.87 Aligned_cols=339 Identities=11% Similarity=0.063 Sum_probs=187.4
Q ss_pred CCchhHHHHHHHHHhccCCCccC-CCcHHHHHHHHHHHHHcC-ChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhc
Q 003918 397 GNPTKQILTYTEAVRTVDPMKAV-GKPHTLWVAFAKLYETYK-DIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRH 474 (786)
Q Consensus 397 ~~~~~a~~~~~~al~~~~~~~~~-~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~ 474 (786)
.|.+.|...++++.....+.... .........++++|.... .+..|+...+++++.....+.=...+...++++..-.
T Consensus 61 ~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~id 140 (629)
T KOG2300|consen 61 KNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIID 140 (629)
T ss_pred ccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhh
Confidence 66777777777776432221000 123456788888888766 8999999999999988777644557778889999889
Q ss_pred cCHHHHHHHHHHHhcC-CchHHhhhhhccCChhHHHHhhhcHHHHHH--HHHHHHH---cCChHHHHHHHHHHHhhccCC
Q 003918 475 KNFKGALELMRRATAE-PSVEVRRRVAADGNEPVQMKLHKSLRLWTF--YVDLEES---LGNLESTRAVYERILDLRIAT 548 (786)
Q Consensus 475 g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~g~~~~A~~~~~~al~~~p~~ 548 (786)
.++..|.+.+.-.... ++ +- +..-++... .+.+... ..++.++.....++.+....|
T Consensus 141 kD~~sA~elLavga~sAd~--------------~~---~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sd 203 (629)
T KOG2300|consen 141 KDFPSALELLAVGAESADH--------------IC---FPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSD 203 (629)
T ss_pred ccchhHHHHHhccccccch--------------hh---hHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCC
Confidence 9999999885433211 11 00 001111111 1222222 234444555555555543333
Q ss_pred HH-------HHHHH-HHHHHHcccHHHHHHHHH---HHHhhcCCC-------------ChHHHHHHH--HHH------HH
Q 003918 549 PQ-------IIINY-ALLLEEHKYFEDAFRVYE---RGVKIFKYP-------------HVKDIWVTY--LSK------FV 596 (786)
Q Consensus 549 ~~-------~~~~~-~~~~~~~g~~~~A~~~~~---~al~~~~~p-------------~~~~~~~~~--~~~------~~ 596 (786)
+. .+..+ ...|...|+...+....+ +.+.....| .....|..- +.. ..
T Consensus 204 k~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~ 283 (629)
T KOG2300|consen 204 KTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVI 283 (629)
T ss_pred hHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHh
Confidence 31 23322 233445576655554444 333322111 111233321 101 11
Q ss_pred HHhCCCChHHHHHHHHHHHhh---CCccC-cHH--------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhH--
Q 003918 597 KRYGKTKLERARELFENAVET---APADA-VKP--------LYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGM-- 662 (786)
Q Consensus 597 ~~~~~~~~~~A~~~~~~al~~---~p~~~-~~~--------~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~-- 662 (786)
..+..|-+++|.++-++++.. .|... ... ..-+.+.+..-.|++.+|.+-...+.+.+-..|...+
T Consensus 284 hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr 363 (629)
T KOG2300|consen 284 HSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLR 363 (629)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHH
Confidence 111235567777776666654 22211 112 2233444455589999999888777665543333111
Q ss_pred -HHHHH-----HHHHHhcChhHHHHHHHHHHHhcCCChh-HHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCC-CC--
Q 003918 663 -YEIYI-----ARAAEIFGVPKTREIYEQAIESGLPDKD-VKAMCLKYAELEKSLGEIDRARGIYVFASQFADPR-SD-- 732 (786)
Q Consensus 663 -~~~~~-----~~~~~~~~~~~A~~~~~~al~~~~p~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~-~~-- 732 (786)
....+ ......+.++.|...|..|++. ....+ ..-.-+++|..|.+.|+-+.-.++.+.. .|. .+
T Consensus 364 ~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~-t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i----~p~nt~s~ 438 (629)
T KOG2300|consen 364 AHEAQIHMLLGLYSHSVNCYENAEFHFIEATKL-TESIDLQAFCNLNLAISYLRIGDAEDLYKALDLI----GPLNTNSL 438 (629)
T ss_pred HhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHh-hhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhc----CCCCCCcc
Confidence 11111 1223457899999999999987 33211 1223356688898988877655555553 233 11
Q ss_pred ------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 003918 733 ------TEFWNRWHEFEVNHGNEDTFREMLR 757 (786)
Q Consensus 733 ------~~~~~~~~~~~~~~G~~~~a~~~~~ 757 (786)
+.+...++-+-...+++.+|+-.++
T Consensus 439 ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~ 469 (629)
T KOG2300|consen 439 SSQRLEASILYVYGLFAFKQNDLNEAKRFLR 469 (629)
T ss_pred hHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 4566667778888999999988884
No 288
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.82 E-value=0.047 Score=34.20 Aligned_cols=32 Identities=16% Similarity=0.185 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhccCCC
Q 003918 425 LWVAFAKLYETYKDIANARVIFDKAVQVNYKT 456 (786)
Q Consensus 425 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 456 (786)
+++.+|.++.+.|++++|+..|++++...|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 56788888889999999999999999988864
No 289
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=94.79 E-value=0.25 Score=48.92 Aligned_cols=102 Identities=15% Similarity=0.087 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhcc
Q 003918 423 HTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAAD 502 (786)
Q Consensus 423 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 502 (786)
...+..-|..|.+..+|..|+..|.++|+....++.-...+|..-+......|++..|+.-..+++...|
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P---------- 150 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKP---------- 150 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCc----------
Confidence 3445556778888899999999999999988777766677888888888888999999999999999888
Q ss_pred CChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 003918 503 GNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDL 544 (786)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 544 (786)
.....++.-+.+...+..++.|....+..+++
T Consensus 151 ----------~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 151 ----------THLKAYIRGAKCLLELERFAEAVNWCEEGLQI 182 (390)
T ss_pred ----------chhhhhhhhhHHHHHHHHHHHHHHHHhhhhhh
Confidence 55666666677777777888888888777765
No 290
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.44 E-value=1.2 Score=42.33 Aligned_cols=114 Identities=14% Similarity=0.074 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH--------hcCCCCchh--------hHHHHHHHHHHHhcChhHHHHHHHHHHHh
Q 003918 626 LYLQYAKLEEDYGLAKRAMKVYDQAT--------KAVPNHEKL--------GMYEIYIARAAEIFGVPKTREIYEQAIES 689 (786)
Q Consensus 626 ~~~~~a~~~~~~g~~~~A~~~~~~~l--------~~~p~~~~~--------~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 689 (786)
+...-|+=+++.|++.+|...|..++ +..|.+++- .+...|..+....|++-++.+.-..++..
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~ 259 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH 259 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 34444555556677777777776554 344544322 24555666667789999999999999999
Q ss_pred cCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCCCHHHHHHHHHHH
Q 003918 690 GLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFE 743 (786)
Q Consensus 690 ~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~ 743 (786)
.|.| ..+++.-|.+....-+.++|.+-|.++++. +|.....+-+.+-.++
T Consensus 260 -~~~n--vKA~frRakAhaa~Wn~~eA~~D~~~vL~l-dpslasvVsrElr~le 309 (329)
T KOG0545|consen 260 -HPGN--VKAYFRRAKAHAAVWNEAEAKADLQKVLEL-DPSLASVVSRELRLLE 309 (329)
T ss_pred -CCch--HHHHHHHHHHHHhhcCHHHHHHHHHHHHhc-ChhhHHHHHHHHHHHH
Confidence 8984 568999999999999999999999999997 7875444444444433
No 291
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.41 E-value=0.082 Score=33.07 Aligned_cols=31 Identities=16% Similarity=0.241 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 003918 626 LYLQYAKLEEDYGLAKRAMKVYDQATKAVPN 656 (786)
Q Consensus 626 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~ 656 (786)
+++.+|.++.+.|+.++|+.+|+++++.+|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4567778888888888888888888888875
No 292
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=94.41 E-value=0.12 Score=54.82 Aligned_cols=98 Identities=14% Similarity=0.079 Sum_probs=54.1
Q ss_pred HcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhc
Q 003918 435 TYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKS 514 (786)
Q Consensus 435 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (786)
..|+...|.+++.+++...|.... .-...++++.++.|-...|-.++.+++.+.. ..
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~---v~~v~la~~~~~~~~~~da~~~l~q~l~~~~--------------------se 675 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQD---VPLVNLANLLIHYGLHLDATKLLLQALAINS--------------------SE 675 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhc---ccHHHHHHHHHHhhhhccHHHHHHHHHhhcc--------------------cC
Confidence 346666666666666655543221 2234555555555555556666666655544 33
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHH
Q 003918 515 LRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINY 555 (786)
Q Consensus 515 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 555 (786)
+..++..|+++..+.+++.|++.|++|+..+|+++.+-..+
T Consensus 676 pl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l 716 (886)
T KOG4507|consen 676 PLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSL 716 (886)
T ss_pred chHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHH
Confidence 45555556666666666666666666666666665544333
No 293
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.35 E-value=0.054 Score=53.70 Aligned_cols=118 Identities=22% Similarity=0.240 Sum_probs=79.6
Q ss_pred CCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHH
Q 003918 600 GKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKT 679 (786)
Q Consensus 600 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A 679 (786)
..|.++.|++.|.+++.++|. +..++...+.++.+.+....|+.-+..++.++|+.....-|.++... -.|+.++|
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~--~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~r--llg~~e~a 201 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPP--LAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAER--LLGNWEEA 201 (377)
T ss_pred cCcchhhhhcccccccccCCc--hhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHH--HhhchHHH
Confidence 557788888888888888887 66777777888888888888888888888888877666777777664 46788888
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHc
Q 003918 680 REIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQ 725 (786)
Q Consensus 680 ~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 725 (786)
.+.+..+.+.+... ....|+. ...-..+.+++-+..++++.+
T Consensus 202 a~dl~~a~kld~dE--~~~a~lK--eV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 202 AHDLALACKLDYDE--ANSATLK--EVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHHHhccccH--HHHHHHH--HhccchhhhhhchhHHHHHHH
Confidence 88888888772222 2233332 233333444444444444443
No 294
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=94.34 E-value=6.1 Score=42.58 Aligned_cols=97 Identities=13% Similarity=0.037 Sum_probs=67.2
Q ss_pred HHHHHHHH-cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Q 003918 629 QYAKLEED-YGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELE 707 (786)
Q Consensus 629 ~~a~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~ 707 (786)
+.|.+|.+ .|+...|...+.+++...|....+.+.. +.....+.|-...|-.++.+++.. ... .+-.++..|+++
T Consensus 611 n~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~-la~~~~~~~~~~da~~~l~q~l~~-~~s--epl~~~~~g~~~ 686 (886)
T KOG4507|consen 611 NEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVN-LANLLIHYGLHLDATKLLLQALAI-NSS--EPLTFLSLGNAY 686 (886)
T ss_pred ecccceeeecCCcHHHHHHHHHHhccChhhhcccHHH-HHHHHHHhhhhccHHHHHHHHHhh-ccc--CchHHHhcchhH
Confidence 45555555 7888888888888888877653332221 112223455666788888888877 432 455777888888
Q ss_pred HHcCChHHHHHHHHHHHccCCCC
Q 003918 708 KSLGEIDRARGIYVFASQFADPR 730 (786)
Q Consensus 708 ~~~g~~~~A~~~~~~al~~~~p~ 730 (786)
....++++|++.|..|++. +|+
T Consensus 687 l~l~~i~~a~~~~~~a~~~-~~~ 708 (886)
T KOG4507|consen 687 LALKNISGALEAFRQALKL-TTK 708 (886)
T ss_pred HHHhhhHHHHHHHHHHHhc-CCC
Confidence 8888899999999998886 666
No 295
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.27 E-value=0.079 Score=34.12 Aligned_cols=27 Identities=15% Similarity=0.304 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHh
Q 003918 425 LWVAFAKLYETYKDIANARVIFDKAVQ 451 (786)
Q Consensus 425 ~~~~~a~~~~~~~~~~~A~~~~~~al~ 451 (786)
+|..+|.+|.+.|++++|+.+|++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 367888899999999999999999554
No 296
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=94.26 E-value=0.17 Score=49.30 Aligned_cols=64 Identities=27% Similarity=0.402 Sum_probs=58.2
Q ss_pred HHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHH
Q 003918 525 EESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVT 590 (786)
Q Consensus 525 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~ 590 (786)
..+.|+.++|..+|+.|+...|.+|+++..+|.+.+..++.-+|-.+|-+|+.+ +|.+..+...
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti--sP~nseALvn 189 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTI--SPGNSEALVN 189 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee--CCCchHHHhh
Confidence 356899999999999999999999999999999999999999999999999998 7888776543
No 297
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.02 E-value=0.063 Score=53.26 Aligned_cols=53 Identities=17% Similarity=0.150 Sum_probs=25.6
Q ss_pred cCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCc
Q 003918 436 YKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPS 492 (786)
Q Consensus 436 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~ 492 (786)
.|.++.|+..|.+++.++|... .++...+..+++.++...|++-+..++.++|
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a----~l~~kr~sv~lkl~kp~~airD~d~A~ein~ 179 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLA----ILYAKRASVFLKLKKPNAAIRDCDFAIEINP 179 (377)
T ss_pred CcchhhhhcccccccccCCchh----hhcccccceeeeccCCchhhhhhhhhhccCc
Confidence 3445555555555555544443 4444444444444445555555555555444
No 298
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=93.68 E-value=8.5 Score=42.00 Aligned_cols=83 Identities=12% Similarity=0.115 Sum_probs=47.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 003918 627 YLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAEL 706 (786)
Q Consensus 627 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~ 706 (786)
....+....+...+.-|-++|++.=+ ....+.++...++.++|-.+-++ .|+- -+++++.||++
T Consensus 750 l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~-----hPe~-~~dVy~pyaqw 813 (1081)
T KOG1538|consen 750 LLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEK-----HPEF-KDDVYMPYAQW 813 (1081)
T ss_pred HHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhh-----Cccc-cccccchHHHH
Confidence 33444444444445555555554321 12223334456777777766555 4432 13478888888
Q ss_pred HHHcCChHHHHHHHHHHHc
Q 003918 707 EKSLGEIDRARGIYVFASQ 725 (786)
Q Consensus 707 ~~~~g~~~~A~~~~~~al~ 725 (786)
+....++++|.+.|.+|-.
T Consensus 814 LAE~DrFeEAqkAfhkAGr 832 (1081)
T KOG1538|consen 814 LAENDRFEEAQKAFHKAGR 832 (1081)
T ss_pred hhhhhhHHHHHHHHHHhcc
Confidence 8777777777777776644
No 299
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.19 E-value=5.1 Score=43.15 Aligned_cols=160 Identities=17% Similarity=0.198 Sum_probs=101.3
Q ss_pred chhHHHHHHHHHHHHHhc------------CCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHhh-----CCC----C----
Q 003918 81 HPEYETLNNTFERALVTM------------HKMPRIWIMYLETLTSQKFITKARRTFDRALCA-----LPV----T---- 135 (786)
Q Consensus 81 ~~~~~~A~~~~~~al~~~------------p~~~~~w~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~----~---- 135 (786)
...|++|...|.-|+..+ |.+++..+..+.+...+|+.+.|..+.+|+|-. +|. .
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 377999999999999864 777888999999999999988888887777632 121 0
Q ss_pred ------cchhhHH---HHHHHHHhcCCChHHHHHHHHHHHccCCC-CH---HHHHHHH-HhcCCHHHHHHHHHHHhcCCC
Q 003918 136 ------QHDRIWE---IYLRFVEQEGIPIETSLRVYRRYLKYDPS-HI---EDFIEFL-VKSKLWQEAAERLASVLNDDQ 201 (786)
Q Consensus 136 ------~~~~~w~---~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~---~~~~~~~-~~~g~~~~A~~~~~~~l~~~~ 201 (786)
.+..++. .+.+.+.+.|-+ .+|.+..+-.++++|. ++ ..+|.+| ++..+|.=-++.++..-+
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~-rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~--- 406 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCW-RTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPEN--- 406 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCCh-HHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHh---
Confidence 0122222 233445567888 8888888888888888 54 2333332 233333333332222211
Q ss_pred ccccCCCcchHHHHHHHHHHhcccccccCCcHHHHHHhhhhccCchhHHHHHHHHHHHHhhcc---HHHHHHHHHHHhhc
Q 003918 202 FYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRREL---FEKARDIFEEGMMT 278 (786)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~y~~~g~---~~~A~~~~~~al~~ 278 (786)
+ ..+..+|+- ..-..+|.+|+.... -+.|+..+.+|+..
T Consensus 407 ----------------------~--------------n~l~~~PN~--~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~ 448 (665)
T KOG2422|consen 407 ----------------------M--------------NKLSQLPNF--GYSLALARFFLRKNEEDDRQSALNALLQALKH 448 (665)
T ss_pred ----------------------h--------------ccHhhcCCc--hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHh
Confidence 0 112234431 223567778877665 57899999999998
Q ss_pred cCch
Q 003918 279 VVTV 282 (786)
Q Consensus 279 ~p~~ 282 (786)
.|..
T Consensus 449 ~P~v 452 (665)
T KOG2422|consen 449 HPLV 452 (665)
T ss_pred CcHH
Confidence 8864
No 300
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=93.09 E-value=0.29 Score=47.67 Aligned_cols=67 Identities=13% Similarity=0.187 Sum_probs=61.5
Q ss_pred HhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHH
Q 003918 472 LRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQI 551 (786)
Q Consensus 472 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 551 (786)
.+.|+.++|..+|+.++.+.| +.+.+...+|.+....++.-+|-.+|-+|+.+.|.+.++
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP--------------------~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseA 186 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAP--------------------TNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEA 186 (472)
T ss_pred HhccchHHHHHHHHHHHhcCC--------------------CCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHH
Confidence 568999999999999999999 889999999999888899999999999999999999998
Q ss_pred HHHHHHH
Q 003918 552 IINYALL 558 (786)
Q Consensus 552 ~~~~~~~ 558 (786)
+.+.++.
T Consensus 187 LvnR~RT 193 (472)
T KOG3824|consen 187 LVNRART 193 (472)
T ss_pred Hhhhhcc
Confidence 8877543
No 301
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=92.99 E-value=21 Score=41.01 Aligned_cols=250 Identities=13% Similarity=0.020 Sum_probs=143.7
Q ss_pred CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCC--Ch---hhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHH
Q 003918 421 KPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYK--TV---DHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEV 495 (786)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~---~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~ 495 (786)
+++.+-+.+|-......++++|..+..++...-+. .. ......--..+.+....|+++.|.++.+.++..-|..
T Consensus 413 ~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~- 491 (894)
T COG2909 413 STPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEA- 491 (894)
T ss_pred hCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccc-
Confidence 45566666666667788899998888887654332 11 1112222233555677899999999999999765510
Q ss_pred hhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh----ccCCHHHHHHH--HHHHHHcccHH--H
Q 003918 496 RRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDL----RIATPQIIINY--ALLLEEHKYFE--D 567 (786)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~~--~~~~~~~g~~~--~ 567 (786)
............+.+..-.|++++|+.+..++.+. +...-.+|..+ +.+...+|+.. +
T Consensus 492 --------------~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~ 557 (894)
T COG2909 492 --------------AYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAE 557 (894)
T ss_pred --------------cchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 00123344556677777889999999999988886 33344555554 66777888433 3
Q ss_pred HHHHHHHHHhh--cCCCChHHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhhCCccCcH-HHHHHHHHHHHHcCCHHHH
Q 003918 568 AFRVYERGVKI--FKYPHVKDIWVTYLSKFVKRYG-KTKLERARELFENAVETAPADAVK-PLYLQYAKLEEDYGLAKRA 643 (786)
Q Consensus 568 A~~~~~~al~~--~~~p~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~-~~~~~~a~~~~~~g~~~~A 643 (786)
....|...-.. ...|.+..+...++..+...+. .+...+++.-++-.....|..... .....++.++...|++++|
T Consensus 558 ~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A 637 (894)
T COG2909 558 QEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKA 637 (894)
T ss_pred HHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHH
Confidence 33333322221 1124433232222322222211 133455666666555555552211 2234788889999999999
Q ss_pred HHHHHHHHhcCCCCchhhHHHHHHH-----HHHHhcChhHHHHHHHH
Q 003918 644 MKVYDQATKAVPNHEKLGMYEIYIA-----RAAEIFGVPKTREIYEQ 685 (786)
Q Consensus 644 ~~~~~~~l~~~p~~~~~~~~~~~~~-----~~~~~~~~~~A~~~~~~ 685 (786)
...+..+......+..-..|.+.+. .-...|+...+.....+
T Consensus 638 ~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 638 LAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 9999887765554321112222221 11235888888777666
No 302
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.75 E-value=20 Score=40.29 Aligned_cols=144 Identities=17% Similarity=0.114 Sum_probs=93.1
Q ss_pred chhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHH-----HcCChhHHHHHHHHHHhc-----cCCChhhHHHHHHHHH
Q 003918 399 PTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYE-----TYKDIANARVIFDKAVQV-----NYKTVDHLASIWCEWA 468 (786)
Q Consensus 399 ~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~-----~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~a 468 (786)
...+...|+.+.+. .++..-..++.++. ...|++.|+..|+.+... .-..+ .....++
T Consensus 228 ~~~a~~~~~~~a~~--------g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~----~a~~~lg 295 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL--------GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLP----PAQYGLG 295 (552)
T ss_pred hhHHHHHHHHHHhh--------cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCC----ccccHHH
Confidence 45688888887743 34555566666555 346889999999888761 00111 3345566
Q ss_pred HHHHhcc-----CHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHc---CChHHHHHHHHH
Q 003918 469 EMELRHK-----NFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESL---GNLESTRAVYER 540 (786)
Q Consensus 469 ~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~A~~~~~~ 540 (786)
.++.+.. +.+.|..+|.++-.... +.....++.++..- .++..|...|..
T Consensus 296 ~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~----------------------~~a~~~lg~~~~~g~~~~d~~~A~~yy~~ 353 (552)
T KOG1550|consen 296 RLYLQGLGVEKIDYEKALKLYTKAAELGN----------------------PDAQYLLGVLYETGTKERDYRRAFEYYSL 353 (552)
T ss_pred HHHhcCCCCccccHHHHHHHHHHHHhcCC----------------------chHHHHHHHHHHcCCccccHHHHHHHHHH
Confidence 6666532 67778888888876644 23333445544332 356788888888
Q ss_pred HHhhccCCHHHHHHHHHHHHHc----ccHHHHHHHHHHHHhh
Q 003918 541 ILDLRIATPQIIINYALLLEEH----KYFEDAFRVYERGVKI 578 (786)
Q Consensus 541 al~~~p~~~~~~~~~~~~~~~~----g~~~~A~~~~~~al~~ 578 (786)
|... .++.+.+.++.+|..- -+.+.|...++++...
T Consensus 354 Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~ 393 (552)
T KOG1550|consen 354 AAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEK 393 (552)
T ss_pred HHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc
Confidence 8775 6777777777777553 2677888888888886
No 303
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.68 E-value=2.6 Score=39.12 Aligned_cols=103 Identities=13% Similarity=0.015 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-chhhHHHHHHHHHHHhcChhHHHHHHHHHHHh-cCCChhHHH--H
Q 003918 624 KPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNH-EKLGMYEIYIARAAEIFGVPKTREIYEQAIES-GLPDKDVKA--M 699 (786)
Q Consensus 624 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~~p~~~~~~--~ 699 (786)
...+..+|.++.+.|+++.|.+.|.++.+.+... ..+.++...+......+++..+..+..++-.. ..+++.... +
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 4577889999999999999999999999887543 45567777777777789999999998888665 111111111 2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHcc
Q 003918 700 CLKYAELEKSLGEIDRARGIYVFASQF 726 (786)
Q Consensus 700 ~~~~~~~~~~~g~~~~A~~~~~~al~~ 726 (786)
-..-|-.....|++..|-+.|-.+...
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 222344566778999999998777653
No 304
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=92.29 E-value=0.23 Score=30.24 Aligned_cols=32 Identities=16% Similarity=0.246 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhccCC
Q 003918 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYK 455 (786)
Q Consensus 424 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 455 (786)
..|..+|..+...|+++.|...|+++++.+|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 35677777888888888888888888877664
No 305
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.20 E-value=14 Score=37.26 Aligned_cols=161 Identities=12% Similarity=0.106 Sum_probs=99.4
Q ss_pred HHcCChHHHHHHHHHHHhhc-cCCH-------HHHHHHHHHHHHcc-cHHHHHHHHHHHHhhcCC--------CChHHHH
Q 003918 526 ESLGNLESTRAVYERILDLR-IATP-------QIIINYALLLEEHK-YFEDAFRVYERGVKIFKY--------PHVKDIW 588 (786)
Q Consensus 526 ~~~g~~~~A~~~~~~al~~~-p~~~-------~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~~~--------p~~~~~~ 588 (786)
.+.|+.+.|...|.++-... ..+| ...++.|.-....+ +++.|...++++.+.+.. |+...+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 36789999999999987764 3344 35666677777778 999999999999988422 1221222
Q ss_pred HHHHHHHHH-HhCCC---ChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCchhhHH
Q 003918 589 VTYLSKFVK-RYGKT---KLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVP-NHEKLGMY 663 (786)
Q Consensus 589 ~~~~~~~~~-~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~ 663 (786)
...+..+.. .+..+ ..++|..+.+-+-...|+ .+.++.....+..+.++.+.+.+.+.+++...+ ....+...
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~--~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~ 161 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGN--KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC--CcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHH
Confidence 222222211 11222 345677777777777787 456665556666668899999999999998766 33344433
Q ss_pred HHHHHHHHHhcChhHHHHHHHHHHHh
Q 003918 664 EIYIARAAEIFGVPKTREIYEQAIES 689 (786)
Q Consensus 664 ~~~~~~~~~~~~~~~A~~~~~~al~~ 689 (786)
...+... .......|...+.+.+..
T Consensus 162 l~~i~~l-~~~~~~~a~~~ld~~l~~ 186 (278)
T PF08631_consen 162 LHHIKQL-AEKSPELAAFCLDYLLLN 186 (278)
T ss_pred HHHHHHH-HhhCcHHHHHHHHHHHHH
Confidence 3333221 223445666666666554
No 306
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=92.01 E-value=2.2 Score=42.55 Aligned_cols=103 Identities=22% Similarity=0.203 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHH
Q 003918 460 LASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYE 539 (786)
Q Consensus 460 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 539 (786)
.+.-+-.-|+.+.+.++|..|+..|.++|+....+ .. -+..+|...+-+....|++-.|+.-..
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D----------~d------lnavLY~NRAAa~~~l~NyRs~l~Dcs 143 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCAD----------PD------LNAVLYTNRAAAQLYLGNYRSALNDCS 143 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCC----------cc------HHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34556667888889999999999999999643200 00 245667777778888999999999999
Q ss_pred HHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 003918 540 RILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKI 578 (786)
Q Consensus 540 ~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 578 (786)
+++..+|.+..+++.-+.+......+..|....+..+..
T Consensus 144 ~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 144 AALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQI 182 (390)
T ss_pred HHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhh
Confidence 999999999999999999999999999998888877765
No 307
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=91.90 E-value=3.2 Score=33.42 Aligned_cols=50 Identities=14% Similarity=0.019 Sum_probs=39.4
Q ss_pred HHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 003918 607 ARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHE 658 (786)
Q Consensus 607 A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~ 658 (786)
....+++.++.+|+ +....+.+|..+...|+++.|.+.+-.+++.+++..
T Consensus 7 ~~~al~~~~a~~P~--D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~ 56 (90)
T PF14561_consen 7 DIAALEAALAANPD--DLDARYALADALLAAGDYEEALDQLLELVRRDRDYE 56 (90)
T ss_dssp HHHHHHHHHHHSTT---HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCC
T ss_pred cHHHHHHHHHcCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccc
Confidence 45667788888998 778889999999999999999999999998887653
No 308
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=91.71 E-value=3.9 Score=33.96 Aligned_cols=46 Identities=20% Similarity=0.415 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 003918 533 STRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKI 578 (786)
Q Consensus 533 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 578 (786)
.++++|.++....|..+..++.+|.-+-....|++++.--++++..
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 3556778888888877777777776655555667777777776665
No 309
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.46 E-value=4.3 Score=43.82 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003918 515 LRLWTFYVDLEESLGNLESTRAVYERI 541 (786)
Q Consensus 515 ~~~~~~~~~~~~~~g~~~~A~~~~~~a 541 (786)
+..|..+++....+|+++-|..+|+++
T Consensus 347 ~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 347 PEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 344555555444555555554444444
No 310
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=91.33 E-value=0.29 Score=45.75 Aligned_cols=58 Identities=21% Similarity=0.271 Sum_probs=40.0
Q ss_pred HHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCC
Q 003918 471 ELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIAT 548 (786)
Q Consensus 471 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 548 (786)
..+.++.+.|.++|.+++..-| .....|..++....+.|+++.|.+.|++.++++|.+
T Consensus 5 ~~~~~D~~aaaely~qal~lap--------------------~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAP--------------------EWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCc--------------------hhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 3455666777777777777766 556667777777777777777777777777776665
No 311
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.05 E-value=3.4 Score=38.32 Aligned_cols=65 Identities=14% Similarity=0.102 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhhc
Q 003918 515 LRLWTFYVDLEESLGNLESTRAVYERILDLRIAT---PQIIINYALLLEEHKYFEDAFRVYERGVKIF 579 (786)
Q Consensus 515 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 579 (786)
...+..++..+.+.|+.+.|.+.|.++...+... .++++.+.++....|++..+...+.++-...
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~ 103 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI 103 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3567777888888888888888888877754332 3466777777777778777777777777653
No 312
>PRK10941 hypothetical protein; Provisional
Probab=90.61 E-value=1.8 Score=43.10 Aligned_cols=68 Identities=13% Similarity=-0.018 Sum_probs=57.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHH
Q 003918 520 FYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWV 589 (786)
Q Consensus 520 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~ 589 (786)
.+-..+.+.++++.|..+.++.+...|++|.-+-..|.+|.+.|.+..|..-++..++. +|+++.+-.
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~--~P~dp~a~~ 253 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ--CPEDPISEM 253 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh--CCCchhHHH
Confidence 34445677889999999999999999999999999999999999999999999999987 577765443
No 313
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.56 E-value=34 Score=38.51 Aligned_cols=274 Identities=15% Similarity=0.094 Sum_probs=155.9
Q ss_pred hhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHH-----hccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhh
Q 003918 439 IANARVIFDKAVQVNYKTVDHLASIWCEWAEMEL-----RHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHK 513 (786)
Q Consensus 439 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~-----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (786)
...|.+.|+.+-+... . ..-..++.++. ...+.+.|+.+|+.+...... .+ ...
T Consensus 228 ~~~a~~~~~~~a~~g~--~----~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~----~a-----------~~~ 286 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH--S----EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKK----AA-----------TKG 286 (552)
T ss_pred hhHHHHHHHHHHhhcc--h----HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHH----HH-----------hhc
Confidence 4678888888776433 2 22233333332 345899999999988762000 00 001
Q ss_pred cHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcc---cHHHHHHHHHHHHhhcCCCChH
Q 003918 514 SLRLWTFYVDLEESLG-----NLESTRAVYERILDLRIATPQIIINYALLLEEHK---YFEDAFRVYERGVKIFKYPHVK 585 (786)
Q Consensus 514 ~~~~~~~~~~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g---~~~~A~~~~~~al~~~~~p~~~ 585 (786)
.+.....++.+|.... +...|..+|.++-.. .++.+.+.+|.++..-. +...|...|..|.... +.
T Consensus 287 ~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G----~~ 360 (552)
T KOG1550|consen 287 LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG----HI 360 (552)
T ss_pred CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC----Ch
Confidence 2234556677776532 678899999999887 56677777777776644 6789999999999852 33
Q ss_pred HHHHHHHHHHHHHhCC---CChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCchhh
Q 003918 586 DIWVTYLSKFVKRYGK---TKLERARELFENAVETAPADAVKPLYLQYAKLEED-YGLAKRAMKVYDQATKAVPNHEKLG 661 (786)
Q Consensus 586 ~~~~~~~~~~~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~ 661 (786)
.+...++ .++.. +. .+...|..+|.++.+.++. .....++.++.. .+..+.+.-.+......--..+..
T Consensus 361 ~A~~~la-~~y~~-G~gv~r~~~~A~~~~k~aA~~g~~----~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~- 433 (552)
T KOG1550|consen 361 LAIYRLA-LCYEL-GLGVERNLELAFAYYKKAAEKGNP----SAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQS- 433 (552)
T ss_pred HHHHHHH-HHHHh-CCCcCCCHHHHHHHHHHHHHccCh----hhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhh-
Confidence 3444333 22222 32 3678999999999999743 223333433332 366665554444333222111111
Q ss_pred HHHHHHHHHH----H----hcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHc----CChHHHHHHHHHHHccCCC
Q 003918 662 MYEIYIARAA----E----IFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSL----GEIDRARGIYVFASQFADP 729 (786)
Q Consensus 662 ~~~~~~~~~~----~----~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~----g~~~~A~~~~~~al~~~~p 729 (786)
...++.... . ..+...+...+.++...|. +.....++..+..- .+.+.|...|.+|...+
T Consensus 434 -~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~-----~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~-- 505 (552)
T KOG1550|consen 434 -NAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGN-----ADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG-- 505 (552)
T ss_pred -HHHHHHHhccccccccccccchhHHHHHHHHHHhccC-----HHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh--
Confidence 111111100 0 1245667777777765522 34667777765543 35889999999998863
Q ss_pred CCCHHHHHHHHHHHHHcCCH--HHHHHHH
Q 003918 730 RSDTEFWNRWHEFEVNHGNE--DTFREML 756 (786)
Q Consensus 730 ~~~~~~~~~~~~~~~~~G~~--~~a~~~~ 756 (786)
....|..---.+.-.|-. ..|+..+
T Consensus 506 --~~~~~nlg~~~e~g~g~~~~~~a~~~~ 532 (552)
T KOG1550|consen 506 --AQALFNLGYMHEHGEGIKVLHLAKRYY 532 (552)
T ss_pred --hHHHhhhhhHHhcCcCcchhHHHHHHH
Confidence 244555433334444433 4444444
No 314
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=90.45 E-value=21 Score=35.98 Aligned_cols=274 Identities=14% Similarity=0.069 Sum_probs=136.1
Q ss_pred HHHcCChhHHHHHHHHHHhc--cCC----ChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhc---CCchHHhhhhhccC
Q 003918 433 YETYKDIANARVIFDKAVQV--NYK----TVDHLASIWCEWAEMELRHKNFKGALELMRRATA---EPSVEVRRRVAADG 503 (786)
Q Consensus 433 ~~~~~~~~~A~~~~~~al~~--~p~----~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~---~~~~~~~~~~~~~~ 503 (786)
....++.++++.+|.+.+.. .|. ......+....++.++.+.|+.++-+.+....-. ..+.
T Consensus 14 ~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~K---------- 83 (411)
T KOG1463|consen 14 LVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSK---------- 83 (411)
T ss_pred hcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhh----------
Confidence 33444556677777776652 111 1222346667778888888877777666554321 1110
Q ss_pred ChhHHHHhhhcHHHHHHHHHHHH-HcCChHHHHHHHHHHHhhccCCH------HHHHHHHHHHHHcccHHHHHHHHHHHH
Q 003918 504 NEPVQMKLHKSLRLWTFYVDLEE-SLGNLESTRAVYERILDLRIATP------QIIINYALLLEEHKYFEDAFRVYERGV 576 (786)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~A~~~~~~al~~~p~~~------~~~~~~~~~~~~~g~~~~A~~~~~~al 576 (786)
+ ....+...+.+... .-+..+.-+.+...+++.....- .+-..++.+|...++|.+|+.+....+
T Consensus 84 a--------kaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~ 155 (411)
T KOG1463|consen 84 A--------KAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLL 155 (411)
T ss_pred H--------HHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 0 01111111121111 11122222333333333211111 122456888999999999998887666
Q ss_pred hhcCCCChHHHHHHHHHHHHH--HhCCCChHHHHHHHHHHHhh-----CCccCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003918 577 KIFKYPHVKDIWVTYLSKFVK--RYGKTKLERARELFENAVET-----APADAVKPLYLQYAKLEEDYGLAKRAMKVYDQ 649 (786)
Q Consensus 577 ~~~~~p~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 649 (786)
+-++.-++-.+... +..+.+ .+...+..+|+..+..|-.. .|+.....+=+.-|-++....++..|.++|-.
T Consensus 156 rElKKlDDK~lLve-v~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyE 234 (411)
T KOG1463|consen 156 RELKKLDDKILLVE-VHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYE 234 (411)
T ss_pred HHHHhcccccceee-ehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHH
Confidence 54322222211111 001110 01335688888887776654 23311111222223334445788999999998
Q ss_pred HHhcCCCC---chhhHHHHHHHHHHH-hcChhHHHHHHH--HHHHhcCCChhHHHHHHHHHHHHHH--cCChHHHHHHHH
Q 003918 650 ATKAVPNH---EKLGMYEIYIARAAE-IFGVPKTREIYE--QAIESGLPDKDVKAMCLKYAELEKS--LGEIDRARGIYV 721 (786)
Q Consensus 650 ~l~~~p~~---~~~~~~~~~~~~~~~-~~~~~~A~~~~~--~al~~~~p~~~~~~~~~~~~~~~~~--~g~~~~A~~~~~ 721 (786)
+++-+..- ........|+-.+.- .+..++.-.+.. -+++. ... ..++....+.++.+ ..+++.|..-|.
T Consensus 235 AfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y-~g~--~i~AmkavAeA~~nRSLkdF~~AL~~yk 311 (411)
T KOG1463|consen 235 AFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKY-AGR--DIDAMKAVAEAFGNRSLKDFEKALADYK 311 (411)
T ss_pred HHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhc-cCc--chHHHHHHHHHhcCCcHHHHHHHHHHhH
Confidence 88765432 233333344433222 244444433332 23333 222 46677888887765 467888888888
Q ss_pred HHHccCCC
Q 003918 722 FASQFADP 729 (786)
Q Consensus 722 ~al~~~~p 729 (786)
.-+.. ||
T Consensus 312 ~eL~~-D~ 318 (411)
T KOG1463|consen 312 KELAE-DP 318 (411)
T ss_pred HHHhc-Ch
Confidence 87774 44
No 315
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=90.07 E-value=0.42 Score=44.78 Aligned_cols=59 Identities=19% Similarity=0.232 Sum_probs=54.0
Q ss_pred HHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChH
Q 003918 525 EESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVK 585 (786)
Q Consensus 525 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~ 585 (786)
..+.++.+.|.++|.++++.-|....-|+.++....+.|+++.|...|++.+++ +|++.
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l--dp~D~ 63 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL--DPEDH 63 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC--Ccccc
Confidence 346789999999999999999999999999999999999999999999999998 67654
No 316
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=90.05 E-value=11 Score=40.88 Aligned_cols=154 Identities=12% Similarity=0.064 Sum_probs=90.9
Q ss_pred HHcCChhHHHHHHH--HHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHh
Q 003918 434 ETYKDIANARVIFD--KAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKL 511 (786)
Q Consensus 434 ~~~~~~~~A~~~~~--~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 511 (786)
...++++.+....+ +.+..-| .......+.++.+.|.++.|+++-+ +|
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i~------~~~~~~i~~fL~~~G~~e~AL~~~~-----D~------------------- 321 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNIP------KDQGQSIARFLEKKGYPELALQFVT-----DP------------------- 321 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG--------HHHHHHHHHHHHHTT-HHHHHHHSS------H-------------------
T ss_pred HHcCChhhhhhhhhhhhhcccCC------hhHHHHHHHHHHHCCCHHHHHhhcC-----Ch-------------------
Confidence 35678888777765 2232222 1567788889999999998876432 22
Q ss_pred hhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHH
Q 003918 512 HKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTY 591 (786)
Q Consensus 512 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~ 591 (786)
.. ..++..+.|+.+.|.++-+. .+++..|..+|.....+|+++-|.++|.++-.. ..+.+
T Consensus 322 ----~~---rFeLAl~lg~L~~A~~~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~------~~L~l-- 381 (443)
T PF04053_consen 322 ----DH---RFELALQLGNLDIALEIAKE-----LDDPEKWKQLGDEALRQGNIELAEECYQKAKDF------SGLLL-- 381 (443)
T ss_dssp ----HH---HHHHHHHCT-HHHHHHHCCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-H------HHHHH--
T ss_pred ----HH---HhHHHHhcCCHHHHHHHHHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCc------cccHH--
Confidence 22 23444688988888665432 357889999999999999999999999987542 22222
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003918 592 LSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQ 649 (786)
Q Consensus 592 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 649 (786)
++. ..|+.+.-.++.+.+...... .+-+.. ....|+.++...++.+
T Consensus 382 ---Ly~--~~g~~~~L~kl~~~a~~~~~~----n~af~~---~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 382 ---LYS--STGDREKLSKLAKIAEERGDI----NIAFQA---ALLLGDVEECVDLLIE 427 (443)
T ss_dssp ---HHH--HCT-HHHHHHHHHHHHHTT-H----HHHHHH---HHHHT-HHHHHHHHHH
T ss_pred ---HHH--HhCCHHHHHHHHHHHHHccCH----HHHHHH---HHHcCCHHHHHHHHHH
Confidence 222 237788888888777666433 122221 2235888887777765
No 317
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=90.03 E-value=1.9 Score=30.50 Aligned_cols=41 Identities=15% Similarity=0.100 Sum_probs=23.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHH
Q 003918 627 YLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYI 667 (786)
Q Consensus 627 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 667 (786)
.+.+|..+.+.|++++|+...+.+|+..|++.........+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 34455555667777777777777777777665554444433
No 318
>PF13041 PPR_2: PPR repeat family
Probab=90.01 E-value=0.82 Score=31.95 Aligned_cols=39 Identities=8% Similarity=0.031 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhhhhHH
Q 003918 733 TEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASYSQVIY 771 (786)
Q Consensus 733 ~~~~~~~~~~~~~~G~~~~a~~~~~~~~~~~~~~~~~~~ 771 (786)
...|..++..+.+.|+.++|.++++.|+..+-.|+..+|
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty 41 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTY 41 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 345555555555555555555555555555555555444
No 319
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=89.72 E-value=4 Score=44.31 Aligned_cols=45 Identities=20% Similarity=0.278 Sum_probs=27.7
Q ss_pred CCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003918 600 GKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQ 649 (786)
Q Consensus 600 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 649 (786)
..+++++|-.+-++-=+..| .+++-+|.++....++++|.+.|-+
T Consensus 785 e~~~W~eAFalAe~hPe~~~-----dVy~pyaqwLAE~DrFeEAqkAfhk 829 (1081)
T KOG1538|consen 785 ETQRWDEAFALAEKHPEFKD-----DVYMPYAQWLAENDRFEEAQKAFHK 829 (1081)
T ss_pred ecccchHhHhhhhhCccccc-----cccchHHHHhhhhhhHHHHHHHHHH
Confidence 44677777766655433333 3677777777666666666666644
No 320
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=89.53 E-value=0.63 Score=28.15 Aligned_cols=31 Identities=19% Similarity=0.247 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 003918 626 LYLQYAKLEEDYGLAKRAMKVYDQATKAVPN 656 (786)
Q Consensus 626 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~ 656 (786)
.|..+|.++...|+++.|...|+++++..|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 5677777777788888888888888777664
No 321
>PRK10941 hypothetical protein; Provisional
Probab=89.48 E-value=3.6 Score=40.90 Aligned_cols=68 Identities=7% Similarity=-0.135 Sum_probs=60.6
Q ss_pred HHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcc
Q 003918 467 WAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRI 546 (786)
Q Consensus 467 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p 546 (786)
+-..+.+.++++.|.++.++++...| +++.-|...|.++.++|.+..|+.-++..++.+|
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~P--------------------~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P 246 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFDP--------------------EDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP 246 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhCC--------------------CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Confidence 44456789999999999999999999 7888899999999999999999999999999999
Q ss_pred CCHHHHHH
Q 003918 547 ATPQIIIN 554 (786)
Q Consensus 547 ~~~~~~~~ 554 (786)
++|.+-.-
T Consensus 247 ~dp~a~~i 254 (269)
T PRK10941 247 EDPISEMI 254 (269)
T ss_pred CchhHHHH
Confidence 99886443
No 322
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=89.20 E-value=2.6 Score=40.42 Aligned_cols=95 Identities=19% Similarity=0.178 Sum_probs=65.9
Q ss_pred CchhHHHHHHHHHhccCCCc-cCCCcHHHHHHHHHHHHHcCC-------hhHHHHHHHHHHhccC--CChhhHHHHHHHH
Q 003918 398 NPTKQILTYTEAVRTVDPMK-AVGKPHTLWVAFAKLYETYKD-------IANARVIFDKAVQVNY--KTVDHLASIWCEW 467 (786)
Q Consensus 398 ~~~~a~~~~~~al~~~~~~~-~~~~~~~~~~~~a~~~~~~~~-------~~~A~~~~~~al~~~p--~~~~~~~~~~~~~ 467 (786)
..++|++.|.-|+....-.. ....-..+++.+|-+|...|+ +..|...|++++.... ....+-..+.+.+
T Consensus 92 t~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLi 171 (214)
T PF09986_consen 92 TLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLI 171 (214)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHH
Confidence 46778888888774311000 011235778888888888888 4567777888776443 2222234677788
Q ss_pred HHHHHhccCHHHHHHHHHHHhcCCc
Q 003918 468 AEMELRHKNFKGALELMRRATAEPS 492 (786)
Q Consensus 468 a~~~~~~g~~~~A~~~~~~al~~~~ 492 (786)
|.+..+.|++++|.+.|.+++....
T Consensus 172 geL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 172 GELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 9999999999999999999997665
No 323
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=89.13 E-value=8.8 Score=36.85 Aligned_cols=95 Identities=26% Similarity=0.298 Sum_probs=57.9
Q ss_pred ChHHHHHHHHHHHhh-----CCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChh
Q 003918 603 KLERARELFENAVET-----APADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVP 677 (786)
Q Consensus 603 ~~~~A~~~~~~al~~-----~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~ 677 (786)
.+++|++.|.-|+-. .+...-..+++.+|+++...|+.+.....+ .
T Consensus 92 t~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl-----------------------------~ 142 (214)
T PF09986_consen 92 TLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFL-----------------------------R 142 (214)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHH-----------------------------H
Confidence 456666666655543 111112457778888888777733333333 3
Q ss_pred HHHHHHHHHHHhc-CCC--hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHcc
Q 003918 678 KTREIYEQAIESG-LPD--KDVKAMCLKYAELEKSLGEIDRARGIYVFASQF 726 (786)
Q Consensus 678 ~A~~~~~~al~~~-~p~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 726 (786)
+|.+.|++++... .|. -....+.+.+|.+.++.|++++|..+|.+.+..
T Consensus 143 ~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 143 KALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 4555556665541 111 112456667788999999999999999999885
No 324
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.92 E-value=17 Score=32.67 Aligned_cols=64 Identities=11% Similarity=0.064 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCc
Q 003918 425 LWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPS 492 (786)
Q Consensus 425 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~ 492 (786)
........-...++.+.+..++..+--..|..+ .+-..-+.+++..|++.+|+.+|+.+....|
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~----e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~ 75 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFP----ELDLFDGWLHIVRGDWDDALRLLRELEERAP 75 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCch----HHHHHHHHHHHHhCCHHHHHHHHHHHhccCC
Confidence 334444444567788888888888777788876 6667777778888888888888888776666
No 325
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=88.85 E-value=2.6 Score=36.18 Aligned_cols=65 Identities=11% Similarity=0.111 Sum_probs=38.0
Q ss_pred CChHHHHHHHHHHHh-hCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHH
Q 003918 602 TKLERARELFENAVE-TAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYI 667 (786)
Q Consensus 602 ~~~~~A~~~~~~al~-~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 667 (786)
.+..+.+.+++..++ ..|.. .....+.++--+.+.|+|++++.+....++..|+++........+
T Consensus 49 ~dv~~GI~iLe~l~~~~~~~~-rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~i 114 (149)
T KOG3364|consen 49 EDVQEGIVILEDLLKSAHPER-RRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKETI 114 (149)
T ss_pred HHHHHhHHHHHHHhhhcCccc-chhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 345566667777665 33332 234444455556667777777777777777777665544443333
No 326
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=88.33 E-value=8.8 Score=31.93 Aligned_cols=49 Identities=18% Similarity=0.152 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCC
Q 003918 678 KTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADP 729 (786)
Q Consensus 678 ~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p 729 (786)
.+.+.|.+++.. .|. +....+.+|+-......++++..--++++....|
T Consensus 62 ~sve~~s~a~~L-sp~--~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~~p 110 (111)
T PF04781_consen 62 GSVECFSRAVEL-SPD--SAHSLFELASQLGSVKYYKKAVKKAKRGLSVTNP 110 (111)
T ss_pred HhHHHHHHHhcc-Chh--HHHHHHHHHHHhhhHHHHHHHHHHHHHHhcccCC
Confidence 456677777777 666 5556666666655566677777777777766444
No 327
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=88.22 E-value=3.2 Score=29.41 Aligned_cols=35 Identities=17% Similarity=0.191 Sum_probs=23.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHH
Q 003918 520 FYVDLEESLGNLESTRAVYERILDLRIATPQIIIN 554 (786)
Q Consensus 520 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 554 (786)
.++..+.+.|++++|+...+.+|+..|++.++...
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 34455567888888888888888888887765443
No 328
>PF13041 PPR_2: PPR repeat family
Probab=87.32 E-value=3.4 Score=28.74 Aligned_cols=45 Identities=9% Similarity=-0.029 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHH
Q 003918 548 TPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLS 593 (786)
Q Consensus 548 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~ 593 (786)
+...|..+...+.+.|++++|.++|++..+.. .+.+...+..++.
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g-~~P~~~Ty~~li~ 46 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRG-IKPDSYTYNILIN 46 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHH
Confidence 34567777777888888888888888877763 3444444554443
No 329
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.10 E-value=21 Score=31.59 Aligned_cols=56 Identities=11% Similarity=0.036 Sum_probs=45.6
Q ss_pred HHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCc
Q 003918 433 YETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPS 492 (786)
Q Consensus 433 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~ 492 (786)
-...++++++..++..+--..|+.+ .+-..-+.+++..|++.+|.++|+...+..+
T Consensus 20 aL~~~d~~D~e~lLdALrvLrP~~~----e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 20 ALRSADPYDAQAMLDALRVLRPNLK----ELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred HHhcCCHHHHHHHHHHHHHhCCCcc----ccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 3357888889999888877888887 6666777778889999999999999887665
No 330
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=87.04 E-value=13 Score=32.16 Aligned_cols=71 Identities=13% Similarity=0.064 Sum_probs=49.7
Q ss_pred cHHHHHHHHHHHHHc---CCHHHHHHHHHHHHh-cCCCCchh-hHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChhH
Q 003918 623 VKPLYLQYAKLEEDY---GLAKRAMKVYDQATK-AVPNHEKL-GMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDV 696 (786)
Q Consensus 623 ~~~~~~~~a~~~~~~---g~~~~A~~~~~~~l~-~~p~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~ 696 (786)
+....+++++.+... .+..+.+.+++..++ ..|....- ..+.+.. +.+.++|++++.+....++. .|+|..
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg--~yRlkeY~~s~~yvd~ll~~-e~~n~Q 106 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVG--HYRLKEYSKSLRYVDALLET-EPNNRQ 106 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHH--HHHHhhHHHHHHHHHHHHhh-CCCcHH
Confidence 466788888888764 456778899999986 44543222 2222222 24788999999999999999 888654
No 331
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=86.81 E-value=16 Score=33.32 Aligned_cols=101 Identities=16% Similarity=0.181 Sum_probs=59.9
Q ss_pred CCHHHHHHHHHHHHH-cccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHH-Hh-CCCChHHHHHHHHHHHhhCCccCc
Q 003918 547 ATPQIIINYALLLEE-HKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVK-RY-GKTKLERARELFENAVETAPADAV 623 (786)
Q Consensus 547 ~~~~~~~~~~~~~~~-~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~-~~-~~~~~~~A~~~~~~al~~~p~~~~ 623 (786)
..|+.-..++..+.. +.+|+.|.++|+.-..-...|.+ -..|+..... .- ..+++..|.+.|+.+-+.+ +
T Consensus 32 K~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~y~kS---CyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n----~ 104 (248)
T KOG4014|consen 32 KRPESCQLLGDYLEGIQKNFQAAVKVFKKNCDENSYPKS---CYKYGMYMLAGKGGDDASLSKAIRPMKIACDAN----I 104 (248)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcHH---HHHhhhhhhcccCCCccCHHHHHHHHHHHhccC----C
Confidence 456666777776655 46788888888877665444433 2333322211 10 1246778888888887643 3
Q ss_pred HHHHHHHHHHHHH-----cC--CHHHHHHHHHHHHhcC
Q 003918 624 KPLYLQYAKLEED-----YG--LAKRAMKVYDQATKAV 654 (786)
Q Consensus 624 ~~~~~~~a~~~~~-----~g--~~~~A~~~~~~~l~~~ 654 (786)
+......+.+... .+ +.++|++++.++.+..
T Consensus 105 ~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~ 142 (248)
T KOG4014|consen 105 PQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE 142 (248)
T ss_pred HHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC
Confidence 3455555555443 22 3678888888887654
No 332
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.79 E-value=15 Score=34.38 Aligned_cols=79 Identities=11% Similarity=0.128 Sum_probs=60.9
Q ss_pred HhcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCC--CCHHHHHHHHHHHHHcCCH
Q 003918 672 EIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPR--SDTEFWNRWHEFEVNHGNE 749 (786)
Q Consensus 672 ~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~--~~~~~~~~~~~~~~~~G~~ 749 (786)
...+-+.|++.|-++-. .|.-..+.+.+.+|.+|.+ .|.++|+.++.++++..+++ .++++...++..+.+.|+.
T Consensus 118 sr~~d~~A~~~fL~~E~--~~~l~t~elq~aLAtyY~k-rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 118 SRFGDQEALRRFLQLEG--TPELETAELQYALATYYTK-RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hccCcHHHHHHHHHHcC--CCCCCCHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 34456778888877654 3444467788888888885 58999999999999874443 4688999999999999999
Q ss_pred HHHH
Q 003918 750 DTFR 753 (786)
Q Consensus 750 ~~a~ 753 (786)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8874
No 333
>PF12854 PPR_1: PPR repeat
Probab=86.61 E-value=1.5 Score=27.62 Aligned_cols=27 Identities=15% Similarity=0.047 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003918 733 TEFWNRWHEFEVNHGNEDTFREMLRIK 759 (786)
Q Consensus 733 ~~~~~~~~~~~~~~G~~~~a~~~~~~~ 759 (786)
...|..++..+.+.|+.++|.++++.|
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 566666666666777777776666543
No 334
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.53 E-value=25 Score=31.91 Aligned_cols=148 Identities=11% Similarity=0.069 Sum_probs=85.1
Q ss_pred HHHHHHHHhhc-CCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHH
Q 003918 386 EQWHRRVKIFE-GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIW 464 (786)
Q Consensus 386 ~~~~~~~~~~~-~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 464 (786)
+.++....+-. +..++|...|...-++ .- -...+.+.+..+.+..+.|+...|...|..+-...|.-....-..-
T Consensus 60 d~flaAL~lA~~~k~d~Alaaf~~lekt-g~---g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~AR 135 (221)
T COG4649 60 DAFLAALKLAQENKTDDALAAFTDLEKT-GY---GSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLAR 135 (221)
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHhc-CC---CcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence 34444344433 7788888888875532 11 1133556677777888889999999999987764442210001223
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHhc-CCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003918 465 CEWAEMELRHKNFKGALELMRRATA-EPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILD 543 (786)
Q Consensus 465 ~~~a~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 543 (786)
+.-+-++..+|.|+......+-.-. .+| -....-..++-.-.+.|++..|++.|.+...
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~--------------------mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNP--------------------MRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCCh--------------------hHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 3344455678888776655544332 222 1112233444455677888888888888776
Q ss_pred hccCCHHHHHHHHHH
Q 003918 544 LRIATPQIIINYALL 558 (786)
Q Consensus 544 ~~p~~~~~~~~~~~~ 558 (786)
+...|....+.+.+
T Consensus 196 -Da~aprnirqRAq~ 209 (221)
T COG4649 196 -DAQAPRNIRQRAQI 209 (221)
T ss_pred -cccCcHHHHHHHHH
Confidence 44445544444443
No 335
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.24 E-value=16 Score=34.15 Aligned_cols=73 Identities=21% Similarity=0.238 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccC----CHHH
Q 003918 476 NFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIA----TPQI 551 (786)
Q Consensus 476 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----~~~~ 551 (786)
+-+.|++.|-++-..+.- +++.+...+|.+|. ..+.++++.++-++++..+. +|++
T Consensus 121 ~d~~A~~~fL~~E~~~~l-------------------~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~ei 180 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPEL-------------------ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEI 180 (203)
T ss_pred CcHHHHHHHHHHcCCCCC-------------------CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHH
Confidence 345667667666554441 46777777787775 55788888888888887433 4788
Q ss_pred HHHHHHHHHHcccHHHH
Q 003918 552 IINYALLLEEHKYFEDA 568 (786)
Q Consensus 552 ~~~~~~~~~~~g~~~~A 568 (786)
+..++.++.+.|+++.|
T Consensus 181 l~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 181 LKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHhcchhhh
Confidence 88888888888887766
No 336
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=86.11 E-value=40 Score=33.86 Aligned_cols=187 Identities=16% Similarity=0.175 Sum_probs=102.2
Q ss_pred CChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHH
Q 003918 529 GNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERAR 608 (786)
Q Consensus 529 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~ 608 (786)
.+..+-++.-..+++++|.+..++..++.-.. --..+|..+++++++..+ ..+.. .... .+. |...+|.
T Consensus 198 Rnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa--~Ti~~AE~l~k~ALka~e-----~~yr~-sqq~-qh~--~~~~da~ 266 (556)
T KOG3807|consen 198 RNPPARIKAAYQALEINNECATAYVLLAEEEA--TTIVDAERLFKQALKAGE-----TIYRQ-SQQC-QHQ--SPQHEAQ 266 (556)
T ss_pred cCcHHHHHHHHHHHhcCchhhhHHHhhhhhhh--hhHHHHHHHHHHHHHHHH-----HHHhh-HHHH-hhh--ccchhhh
Confidence 34445556667889999999888888775433 346788899999998621 11111 1111 111 1121121
Q ss_pred HHHHHHHhhCCccCcHHHHH--HHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHH
Q 003918 609 ELFENAVETAPADAVKPLYL--QYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQA 686 (786)
Q Consensus 609 ~~~~~al~~~p~~~~~~~~~--~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 686 (786)
...+. ++.+|. .++.+-.+.|++.+|.++++...+..|-.....+...+++......-|.+...++-+.
T Consensus 267 ------~rRDt---nvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakY 337 (556)
T KOG3807|consen 267 ------LRRDT---NVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKY 337 (556)
T ss_pred ------hhccc---chhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22222 244444 5788888899999999999999888874333334444444433444444444444433
Q ss_pred HHhcCCChhHHHHHHHHHHH-------------HHHcCC---hHHHHHHHHHHHccCCCCCCHHHHHHH
Q 003918 687 IESGLPDKDVKAMCLKYAEL-------------EKSLGE---IDRARGIYVFASQFADPRSDTEFWNRW 739 (786)
Q Consensus 687 l~~~~p~~~~~~~~~~~~~~-------------~~~~g~---~~~A~~~~~~al~~~~p~~~~~~~~~~ 739 (786)
=....|. +..+.+.-+-+ -.+.|- -..|.+...+|++- +|.. +.....+
T Consensus 338 DdislPk--SA~icYTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEF-NPHV-PkYLLE~ 402 (556)
T KOG3807|consen 338 DDISLPK--SAAICYTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEF-NPHV-PKYLLEM 402 (556)
T ss_pred ccccCcc--hHHHHHHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhc-CCCC-cHHHHHH
Confidence 2322444 22222211111 111222 24788999999996 7874 4444443
No 337
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=86.07 E-value=2.5 Score=44.07 Aligned_cols=118 Identities=10% Similarity=0.063 Sum_probs=71.7
Q ss_pred HHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHH---hcCCchHHhhhhhccCChhHHHH
Q 003918 434 ETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRA---TAEPSVEVRRRVAADGNEPVQMK 510 (786)
Q Consensus 434 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a---l~~~~~~~~~~~~~~~~~~~~~~ 510 (786)
...|+...|-.....++...|.+| ......+.+....|.++.+.+.+..+ +....
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p----~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~------------------ 357 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDP----VLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTD------------------ 357 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCc----hhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCc------------------
Confidence 356888888777778888888877 66677777888889999888877443 33222
Q ss_pred hhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 003918 511 LHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKI 578 (786)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 578 (786)
....-+..-...+|+.+.|...-+..+.....++++..--+--....|-++++.-..++.+.+
T Consensus 358 -----~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 358 -----STLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred -----hHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 111111222234556666666666666555555554443333344555666666666666665
No 338
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.31 E-value=56 Score=34.86 Aligned_cols=199 Identities=13% Similarity=0.097 Sum_probs=125.2
Q ss_pred HHHHHHHHcccHHHHHHHHHHHHhhcC-CCC-----hHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCcc-CcHHH
Q 003918 554 NYALLLEEHKYFEDAFRVYERGVKIFK-YPH-----VKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPAD-AVKPL 626 (786)
Q Consensus 554 ~~~~~~~~~g~~~~A~~~~~~al~~~~-~p~-----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~ 626 (786)
..+.+..-.|++.+|++-+..+..-+. .|. .......++..++.+ ..+.++.|..-|-.|++..-.. --..+
T Consensus 328 ~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~-sv~~~enAe~hf~~a~k~t~~~dl~a~~ 406 (629)
T KOG2300|consen 328 HIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSH-SVNCYENAEFHFIEATKLTESIDLQAFC 406 (629)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhh-hcchHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 345556667999999888877766531 233 112222233233333 3477999999999998875431 01224
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchh--------hHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChh---
Q 003918 627 YLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKL--------GMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKD--- 695 (786)
Q Consensus 627 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~--------~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~--- 695 (786)
-.++|..|.+.|+-+.-.++.+.. .|.+... .++..++.+....+++.+|+....+.++..+....
T Consensus 407 nlnlAi~YL~~~~~ed~y~~ld~i---~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL 483 (629)
T KOG2300|consen 407 NLNLAISYLRIGDAEDLYKALDLI---GPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRL 483 (629)
T ss_pred HHhHHHHHHHhccHHHHHHHHHhc---CCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHH
Confidence 456888888888777655555543 4442111 12333334445789999999999999987211100
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHcc--CCCCCCHHHHHH--HHHHHHHcCC--HHHHHHHH
Q 003918 696 VKAMCLKYAELEKSLGEIDRARGIYVFASQF--ADPRSDTEFWNR--WHEFEVNHGN--EDTFREML 756 (786)
Q Consensus 696 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~~p~~~~~~~~~--~~~~~~~~G~--~~~a~~~~ 756 (786)
..-....++.+....||..++++....+++. .-||....+|.. +-+++...|+ .+...+.+
T Consensus 484 ~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~ 550 (629)
T KOG2300|consen 484 TACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAF 550 (629)
T ss_pred HHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 1223455677888899999999988888764 357877888877 5567778887 45555554
No 339
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=84.86 E-value=71 Score=35.68 Aligned_cols=28 Identities=7% Similarity=0.138 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHh
Q 003918 249 GRLWTSLADYYIRRELFEKARDIFEEGM 276 (786)
Q Consensus 249 ~~~~~~la~~y~~~g~~~~A~~~~~~al 276 (786)
..+|..+|..+......++|.+.|...-
T Consensus 796 e~A~r~ig~~fa~~~~We~A~~yY~~~~ 823 (1189)
T KOG2041|consen 796 EDAFRNIGETFAEMMEWEEAAKYYSYCG 823 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5678889999999999999999998854
No 340
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.75 E-value=78 Score=36.01 Aligned_cols=65 Identities=11% Similarity=0.114 Sum_probs=40.3
Q ss_pred HHHHHcC--ChHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhhhhHHHHH--hhhhhh
Q 003918 705 ELEKSLG--EIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASYSQVIYFSF--LLLLWI 780 (786)
Q Consensus 705 ~~~~~~g--~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~G~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 780 (786)
-++++.. ++++|+++..+ ..++...+-++.+.||..+|..++ .+++...-..+.|+.. +.=+|.
T Consensus 627 PFLr~s~~Y~lekA~eiC~q----------~~~~~E~VYlLgrmGn~k~AL~lI--I~el~die~AIefvKeq~D~eLWe 694 (846)
T KOG2066|consen 627 PFLRKSQNYNLEKALEICSQ----------KNFYEELVYLLGRMGNAKEALKLI--INELRDIEKAIEFVKEQDDSELWE 694 (846)
T ss_pred HHHHhcCCCCHHHHHHHHHh----------hCcHHHHHHHHHhhcchHHHHHHH--HHHhhCHHHHHHHHHhcCCHHHHH
Confidence 3444544 34566666431 227777888888888888888877 6666666666666643 234554
Q ss_pred c
Q 003918 781 F 781 (786)
Q Consensus 781 ~ 781 (786)
+
T Consensus 695 ~ 695 (846)
T KOG2066|consen 695 D 695 (846)
T ss_pred H
Confidence 4
No 341
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.69 E-value=2.2 Score=28.12 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 003918 550 QIIINYALLLEEHKYFEDAFRVYERGVKI 578 (786)
Q Consensus 550 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 578 (786)
.++.++|.++...|++++|+.++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45677888888888888888888888876
No 342
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.86 E-value=34 Score=31.12 Aligned_cols=122 Identities=13% Similarity=0.094 Sum_probs=84.8
Q ss_pred CCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchh----hHHHHHHHHHHHhcCh
Q 003918 601 KTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKL----GMYEIYIARAAEIFGV 676 (786)
Q Consensus 601 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~----~~~~~~~~~~~~~~~~ 676 (786)
.+..++|...|...-..+-..+-+...+..+.+..+.|+...|+..|..+-.-.|..... .+..+|+. ...|.|
T Consensus 71 ~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lL--vD~gsy 148 (221)
T COG4649 71 ENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLL--VDNGSY 148 (221)
T ss_pred cCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHH--hccccH
Confidence 367888999998887776665445566777888888999999999999987766532111 23333333 357888
Q ss_pred hHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHcc
Q 003918 677 PKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQF 726 (786)
Q Consensus 677 ~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 726 (786)
+......+-...-+.|-. ...--.++-.-++.|++.+|+.+|......
T Consensus 149 ~dV~srvepLa~d~n~mR--~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMR--HSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHhhhccCCCChhH--HHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 887766665433234432 234455677778999999999999998763
No 343
>PF12854 PPR_1: PPR repeat
Probab=83.32 E-value=2.6 Score=26.56 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHH
Q 003918 249 GRLWTSLADYYIRRELFEKARDIFEEG 275 (786)
Q Consensus 249 ~~~~~~la~~y~~~g~~~~A~~~~~~a 275 (786)
...|..+.+.|.+.|+.++|.++|++.
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 568999999999999999999999863
No 344
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=82.13 E-value=6.3 Score=39.17 Aligned_cols=64 Identities=8% Similarity=0.018 Sum_probs=58.3
Q ss_pred cHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhc
Q 003918 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATA 489 (786)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 489 (786)
...++..++..+...|+++.+...+++.+..+|-+- .+|..+...+.+.|+...|+..|+++-.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E----~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDE----PAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccch----HHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 456778899999999999999999999999999886 9999999999999999999999988754
No 345
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=81.92 E-value=9.2 Score=31.08 Aligned_cols=57 Identities=14% Similarity=0.102 Sum_probs=39.0
Q ss_pred HHhcChhHHHHHHHHHHHhc---CCCh---hHHHHHHHHHHHHHHcCChHHHHHHHHHHHccC
Q 003918 671 AEIFGVPKTREIYEQAIESG---LPDK---DVKAMCLKYAELEKSLGEIDRARGIYVFASQFA 727 (786)
Q Consensus 671 ~~~~~~~~A~~~~~~al~~~---~p~~---~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 727 (786)
.+.|++..|.+.+.+..... .... ......+.++.+....|++++|...++.|++..
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 45677777766666655430 1111 124466778888889999999999999998863
No 346
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=81.42 E-value=41 Score=30.33 Aligned_cols=66 Identities=17% Similarity=0.180 Sum_probs=54.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChH
Q 003918 518 WTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVK 585 (786)
Q Consensus 518 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~ 585 (786)
....+.+-...++.+.+..++.-..-..|..+.+-..-|.+++..|++.+|+.+++.+... .|..+
T Consensus 13 Lie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p 78 (160)
T PF09613_consen 13 LIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFP 78 (160)
T ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCh
Confidence 3444445556789999999999999999999999999999999999999999999998774 35444
No 347
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=81.31 E-value=3.1 Score=27.31 Aligned_cols=28 Identities=14% Similarity=0.258 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 003918 425 LWVAFAKLYETYKDIANARVIFDKAVQV 452 (786)
Q Consensus 425 ~~~~~a~~~~~~~~~~~A~~~~~~al~~ 452 (786)
.+..+|.++...|++++|..++++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 4567777777778888888887777753
No 348
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=81.20 E-value=56 Score=34.18 Aligned_cols=137 Identities=10% Similarity=0.044 Sum_probs=94.4
Q ss_pred CHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhhccCCHHHHH
Q 003918 476 NFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLG--NLESTRAVYERILDLRIATPQIII 553 (786)
Q Consensus 476 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~ 553 (786)
-.++-+.+...++.+.| ++..+|.....+..+.+ ++..-+++.+++++.+|.+-..|.
T Consensus 90 ~ld~eL~~~~~~L~~np--------------------ksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~ 149 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNP--------------------KSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWH 149 (421)
T ss_pred hhHHHHHHHHHHHHhCc--------------------hhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchH
Confidence 45556677788888888 78899999988887765 468889999999999999999998
Q ss_pred HHHHHHHHc----ccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHh---CCCC---h---HHHHHHHHHHHhhCCc
Q 003918 554 NYALLLEEH----KYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRY---GKTK---L---ERARELFENAVETAPA 620 (786)
Q Consensus 554 ~~~~~~~~~----g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~---~~~~---~---~~A~~~~~~al~~~p~ 620 (786)
..=.+.... ....+-++...+++.. ++.+..+|..-...+-... ..|+ . ..-.+.-..|+=.+|+
T Consensus 150 YRRfV~~~~~~~~~~~~~El~ftt~~I~~--nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~ 227 (421)
T KOG0529|consen 150 YRRFVVEQAERSRNLEKEELEFTTKLIND--NFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPE 227 (421)
T ss_pred HHHHHHHHHhcccccchhHHHHHHHHHhc--cchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCcc
Confidence 764444332 2245667778888885 7999999986543332221 1231 2 2334455556667898
Q ss_pred cCcHHHHHHHHHHHHH
Q 003918 621 DAVKPLYLQYAKLEED 636 (786)
Q Consensus 621 ~~~~~~~~~~a~~~~~ 636 (786)
+...|+.+-+++.+
T Consensus 228 --DqS~WfY~rWLl~~ 241 (421)
T KOG0529|consen 228 --DQSCWFYHRWLLGR 241 (421)
T ss_pred --ccceeeehHHhhcc
Confidence 56788876666544
No 349
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=80.97 E-value=13 Score=30.29 Aligned_cols=57 Identities=14% Similarity=0.222 Sum_probs=39.1
Q ss_pred CCCChHHHHHHHHHHHhhCCccC-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 003918 600 GKTKLERARELFENAVETAPADA-------VKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPN 656 (786)
Q Consensus 600 ~~~~~~~A~~~~~~al~~~p~~~-------~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~ 656 (786)
+.|++..|.+.+.+......... ......+++.+....|++++|...++++++....
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 45778888777777766533321 1235566777888888888888888888876543
No 350
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.93 E-value=7.8 Score=42.28 Aligned_cols=101 Identities=14% Similarity=0.163 Sum_probs=74.4
Q ss_pred HHHHHHHHhhc-CCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHH
Q 003918 386 EQWHRRVKIFE-GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIW 464 (786)
Q Consensus 386 ~~~~~~~~~~~-~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 464 (786)
..|......++ .++..+++.|...++.++.+........+.-.++-+|....+.|.|.+++++|-+.+|.++ -.-
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~----l~q 431 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSP----LCQ 431 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccH----HHH
Confidence 45666666665 7899999999999976554333334466677788889999999999999999999999886 222
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHhcC
Q 003918 465 CEWAEMELRHKNFKGALELMRRATAE 490 (786)
Q Consensus 465 ~~~a~~~~~~g~~~~A~~~~~~al~~ 490 (786)
..........|+-++|..+.......
T Consensus 432 ~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 432 LLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 33333445678889999888776643
No 351
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=80.85 E-value=7.7 Score=38.58 Aligned_cols=62 Identities=15% Similarity=0.101 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 003918 516 RLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVK 577 (786)
Q Consensus 516 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 577 (786)
.++..++..+...|+++.+...+++.+..+|-+..+|..+...|...|+...|+..|++.-.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 45566777777888899999999999999999999999999999999999999998887766
No 352
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=80.75 E-value=33 Score=28.92 Aligned_cols=105 Identities=15% Similarity=0.144 Sum_probs=59.5
Q ss_pred HHHHHHHHH--HHhccCHHHHHHHHHHHhc----CCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHH
Q 003918 462 SIWCEWAEM--ELRHKNFKGALELMRRATA----EPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTR 535 (786)
Q Consensus 462 ~~~~~~a~~--~~~~g~~~~A~~~~~~al~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 535 (786)
..|..++.- .++.|-+++|..-+++++. +|+.+...+.+ -+...+..++..+..+|++++++
T Consensus 8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~G------------FDA~chA~Ls~A~~~Lgry~e~L 75 (144)
T PF12968_consen 8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDG------------FDAFCHAGLSGALAGLGRYDECL 75 (144)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHH------------HHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhccccc------------HHHHHHHHHHHHHHhhccHHHHH
Confidence 444444443 3557889999999988874 44422211111 23344555666777888888887
Q ss_pred HHHHHHHhh-------ccCCHHHHH----HHHHHHHHcccHHHHHHHHHHHHhh
Q 003918 536 AVYERILDL-------RIATPQIII----NYALLLEEHKYFEDAFRVYERGVKI 578 (786)
Q Consensus 536 ~~~~~al~~-------~p~~~~~~~----~~~~~~~~~g~~~~A~~~~~~al~~ 578 (786)
..-+++|.. ..+.-..|+ ..+..+...|..++|+..|+.+.+.
T Consensus 76 ~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 76 QSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 777777654 333344444 3455666677777777777766553
No 353
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=80.53 E-value=10 Score=39.78 Aligned_cols=124 Identities=13% Similarity=0.121 Sum_probs=87.3
Q ss_pred HcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHH
Q 003918 527 SLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLER 606 (786)
Q Consensus 527 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 606 (786)
..|+.-.|-.-...++...|.+|......+.+..+.|.++.+...+.-+-++...- +.. ....+..+ .+.+.+++
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~-~~~-~~~~~r~~---~~l~r~~~ 375 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTT-DST-LRCRLRSL---HGLARWRE 375 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCC-chH-HHHHHHhh---hchhhHHH
Confidence 46788888888888899999999999999999999999999988887665543222 221 11112222 25677888
Q ss_pred HHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 003918 607 ARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNH 657 (786)
Q Consensus 607 A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~ 657 (786)
|...-+-.+...-. +.++..-.+.--...|-++++.-.+++.+..+|+.
T Consensus 376 a~s~a~~~l~~eie--~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 376 ALSTAEMMLSNEIE--DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHHhccccC--ChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 88887777765444 34444444444455788899999999999888864
No 354
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=79.00 E-value=1e+02 Score=33.36 Aligned_cols=172 Identities=11% Similarity=0.052 Sum_probs=99.4
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 003918 465 CEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDL 544 (786)
Q Consensus 465 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 544 (786)
..+..+..++....-...+..+++.... +...+..++.+|... ..++-..++++.++.
T Consensus 70 ~~~~~~f~~n~k~~~veh~c~~~l~~~e---------------------~kmal~el~q~y~en-~n~~l~~lWer~ve~ 127 (711)
T COG1747 70 VTLLTIFGDNHKNQIVEHLCTRVLEYGE---------------------SKMALLELLQCYKEN-GNEQLYSLWERLVEY 127 (711)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhcc---------------------hHHHHHHHHHHHHhc-CchhhHHHHHHHHHh
Confidence 3344444444444455556666665544 345566677777665 556677778888888
Q ss_pred ccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCC-----hHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCC
Q 003918 545 RIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPH-----VKDIWVTYLSKFVKRYGKTKLERARELFENAVETAP 619 (786)
Q Consensus 545 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~-----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 619 (786)
+-++...--.++..|++ ++.+.+...|.+++..+ -|. --++|..... +. ..+.+....+..+.-....
T Consensus 128 dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrf-I~~~q~~~i~evWeKL~~-~i----~dD~D~fl~l~~kiqt~lg 200 (711)
T COG1747 128 DFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRF-IPRRQNAAIKEVWEKLPE-LI----GDDKDFFLRLQKKIQTKLG 200 (711)
T ss_pred cchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHh-cchhhhhhHHHHHHHHHH-hc----cccHHHHHHHHHHHHHhhc
Confidence 77777777777777777 67777888888887764 231 2235655332 11 1344444444444433332
Q ss_pred ccCcHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHH
Q 003918 620 ADAVKPLYLQYA-KLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIA 668 (786)
Q Consensus 620 ~~~~~~~~~~~a-~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~ 668 (786)
.. -..+.+... .-|....++++|+.+....++.+.. +.+.....+.
T Consensus 201 ~~-~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k--~~~ar~~~i~ 247 (711)
T COG1747 201 EG-RGSVLMQDVYKKYSENENWTEAIRILKHILEHDEK--DVWARKEIIE 247 (711)
T ss_pred cc-hHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcch--hhhHHHHHHH
Confidence 21 123333333 3344578899999999998876544 4444444443
No 355
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=78.88 E-value=2.8 Score=24.44 Aligned_cols=24 Identities=13% Similarity=0.113 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHH
Q 003918 251 LWTSLADYYIRRELFEKARDIFEE 274 (786)
Q Consensus 251 ~~~~la~~y~~~g~~~~A~~~~~~ 274 (786)
....+|..+...|++++|+..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhC
Confidence 467889999999999999998763
No 356
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=78.78 E-value=1e+02 Score=33.31 Aligned_cols=188 Identities=12% Similarity=0.107 Sum_probs=116.0
Q ss_pred hhcCCCCHHHHHHHHHhhcCCchh--HHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCC
Q 003918 378 LRQNPHNVEQWHRRVKIFEGNPTK--QILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYK 455 (786)
Q Consensus 378 l~~~p~~~~~~~~~~~~~~~~~~~--a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 455 (786)
+...|.+-........++..+..- ...+..+.+. . +.+--.+..++++|... ..++-..+.++.++.+-+
T Consensus 59 ~s~~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~-~------~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn 130 (711)
T COG1747 59 LSKQLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLE-Y------GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN 130 (711)
T ss_pred hhhccccchHHHHHHHHhccchHHHHHHHHHHHHHH-h------cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch
Confidence 345666666667777776654433 3455666663 2 25677889999999887 557788999999999988
Q ss_pred ChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcC-CchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHH
Q 003918 456 TVDHLASIWCEWAEMELRHKNFKGALELMRRATAE-PSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLEST 534 (786)
Q Consensus 456 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 534 (786)
++ ..-..++..+.+ ++.+.+...|.+++.. -| +++. ..-..+|..+..+ --.+.+.-
T Consensus 131 Dv----v~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~----~~q~-----------~~i~evWeKL~~~--i~dD~D~f 188 (711)
T COG1747 131 DV----VIGRELADKYEK-IKKSKAAEFFGKALYRFIP----RRQN-----------AAIKEVWEKLPEL--IGDDKDFF 188 (711)
T ss_pred hH----HHHHHHHHHHHH-hchhhHHHHHHHHHHHhcc----hhhh-----------hhHHHHHHHHHHh--ccccHHHH
Confidence 87 777888888776 8889999999999843 23 0100 0122455554432 12244444
Q ss_pred HHHHHHHHhhccC-CHHHHHHHH-HHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHH
Q 003918 535 RAVYERILDLRIA-TPQIIINYA-LLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVK 597 (786)
Q Consensus 535 ~~~~~~al~~~p~-~~~~~~~~~-~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~ 597 (786)
..+..+.-+.... -..+.+... .-|....++.+|+.+..-.++. +..+.-+--..+..+..
T Consensus 189 l~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~--d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 189 LRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEH--DEKDVWARKEIIENLRD 251 (711)
T ss_pred HHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhh--cchhhhHHHHHHHHHHH
Confidence 4444444332221 223333333 4456677899999999988885 55554444444444433
No 357
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=77.64 E-value=6.9 Score=25.09 Aligned_cols=31 Identities=6% Similarity=-0.014 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHH--HHHHHhccC
Q 003918 424 TLWVAFAKLYETYKDIANARVI--FDKAVQVNY 454 (786)
Q Consensus 424 ~~~~~~a~~~~~~~~~~~A~~~--~~~al~~~p 454 (786)
+.|+.+|-.+...|++++|+.+ |+-+...++
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 4567777777888888888888 435555554
No 358
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.58 E-value=1.4e+02 Score=34.18 Aligned_cols=68 Identities=12% Similarity=0.187 Sum_probs=46.2
Q ss_pred hhHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHhcCCC
Q 003918 82 PEYETLNNTFERALVTMHK--MPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIP 154 (786)
Q Consensus 82 ~~~~~A~~~~~~al~~~p~--~~~~w~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~w~~~~~~~~~~~~~ 154 (786)
+.|++|...-+.....-|. --.+|..|...++..++++.|.+..-+.+.. ....|..-.......++.
T Consensus 370 k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn-----~~~eWe~~V~~f~e~~~l 439 (846)
T KOG2066|consen 370 KKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN-----NAAEWELWVFKFAELDQL 439 (846)
T ss_pred hHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc-----hHHHHHHHHHHhcccccc
Confidence 6788887776555444343 3357999999999999999988887776652 245677766555444443
No 359
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=76.19 E-value=4.3 Score=27.43 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=22.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHcc
Q 003918 701 LKYAELEKSLGEIDRARGIYVFASQF 726 (786)
Q Consensus 701 ~~~~~~~~~~g~~~~A~~~~~~al~~ 726 (786)
+.+|.+|...|+.+.|+++++..+..
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 56788999999999999999999864
No 360
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=75.50 E-value=9.8 Score=37.43 Aligned_cols=55 Identities=16% Similarity=0.146 Sum_probs=36.2
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHccCCCCHH---HHHHHHHhcCCHHHHHHHHHHHh
Q 003918 142 EIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIE---DFIEFLVKSKLWQEAAERLASVL 197 (786)
Q Consensus 142 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~~~~~~~~g~~~~A~~~~~~~l 197 (786)
...+..+...|.+ .+|.++.+++++.+|.+.+ .++..+...|+--.|++.|++.-
T Consensus 283 gkva~~yle~g~~-neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKP-NEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCCh-HHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 4445556666777 7777777777777776653 34466667777777776666654
No 361
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=75.42 E-value=3.8 Score=23.91 Aligned_cols=23 Identities=17% Similarity=0.057 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHcccHHHHHHHHH
Q 003918 551 IIINYALLLEEHKYFEDAFRVYE 573 (786)
Q Consensus 551 ~~~~~~~~~~~~g~~~~A~~~~~ 573 (786)
+...++..+...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34555666666666666655543
No 362
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=74.79 E-value=99 Score=31.16 Aligned_cols=158 Identities=11% Similarity=0.070 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHH-HHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 003918 516 RLWTFYVDLEESLGNLESTRAVYERILDLRIATPQII-INYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSK 594 (786)
Q Consensus 516 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~ 594 (786)
.+...-.++..+.+..+-+...++..-.. .+-|.+. -....+..+....++...-.-++++ +|+-.. .
T Consensus 36 eLle~k~~ll~~TNMiDy~md~~k~l~~s-ed~p~a~~ekr~~Vla~lkeLe~ev~piv~~le---~Pd~~~---~---- 104 (432)
T KOG2758|consen 36 ELLEAKLQLLNKTNMIDYVMDTYKNLHTS-EDMPNALVEKRTEVLAELKELEEEVAPIVKVLE---NPDLIA---A---- 104 (432)
T ss_pred HHHHHHHHHHcccchHHHHHHHHhccccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CHHHHH---H----
Confidence 33333344455556666666666655321 2223332 2334555555666666665555555 454321 1
Q ss_pred HHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHH--HHH
Q 003918 595 FVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIAR--AAE 672 (786)
Q Consensus 595 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~ 672 (786)
+. ..++-..-.+.+++--...|+ .....+.||.+.+.+|++..|-.++-......++...-.+...|+.. +.-
T Consensus 105 ~~---~~k~~~~~l~~L~e~ynf~~e--~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL 179 (432)
T KOG2758|consen 105 LR---SDKDRVQNLQHLQEHYNFTPE--RIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEIL 179 (432)
T ss_pred HH---hhhhHHHHHHHHHHhcCCCHH--HHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHH
Confidence 11 001111222222222334566 67889999999999999999988776555555543332333344433 334
Q ss_pred hcChhHHHHHHHHHHHh
Q 003918 673 IFGVPKTREIYEQAIES 689 (786)
Q Consensus 673 ~~~~~~A~~~~~~al~~ 689 (786)
..+.+.|++-+.+.-+.
T Consensus 180 ~qnWd~A~edL~rLre~ 196 (432)
T KOG2758|consen 180 TQNWDGALEDLTRLREY 196 (432)
T ss_pred HhhHHHHHHHHHHHHHH
Confidence 57888888877776554
No 363
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=74.58 E-value=1.2e+02 Score=31.93 Aligned_cols=134 Identities=11% Similarity=0.115 Sum_probs=97.8
Q ss_pred ChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcc--cHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhC--CCChH
Q 003918 530 NLESTRAVYERILDLRIATPQIIINYALLLEEHK--YFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYG--KTKLE 605 (786)
Q Consensus 530 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g--~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~--~~~~~ 605 (786)
-.+.-+.....++..+|++-.+|+....++.+.+ ++..-+++.+++++. +|.+...|.. =.+...... .....
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~--D~RNfh~W~Y-RRfV~~~~~~~~~~~~ 166 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQ--DPRNFHAWHY-RRFVVEQAERSRNLEK 166 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc--CcccccchHH-HHHHHHHHhcccccch
Confidence 4566778888999999999999999999999876 467889999999997 8999988873 333333211 11255
Q ss_pred HHHHHHHHHHhhCCccCcHHHHHHHHHHHHH------cCC------HHHHHHHHHHHHhcCCCCchhhHHHHHHH
Q 003918 606 RARELFENAVETAPADAVKPLYLQYAKLEED------YGL------AKRAMKVYDQATKAVPNHEKLGMYEIYIA 668 (786)
Q Consensus 606 ~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~------~g~------~~~A~~~~~~~l~~~p~~~~~~~~~~~~~ 668 (786)
+=.++-.+++..++. +...|.....+... .|+ +..-......++-.+|.+...|.+..|+.
T Consensus 167 ~El~ftt~~I~~nfS--NYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl 239 (421)
T KOG0529|consen 167 EELEFTTKLINDNFS--NYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLL 239 (421)
T ss_pred hHHHHHHHHHhccch--hhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhh
Confidence 667788889988888 45678776666653 342 33455666778888998877777666554
No 364
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=74.31 E-value=1e+02 Score=31.18 Aligned_cols=131 Identities=17% Similarity=0.081 Sum_probs=74.2
Q ss_pred CCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHH----cCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHH
Q 003918 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYET----YKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMEL 472 (786)
Q Consensus 397 ~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~ 472 (786)
.+..+|...|..+... ..+.....+|.++.. ..+..+|...|+++........ ......++.++.
T Consensus 91 ~~~~~A~~~~~~~a~~--------g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a---~~~~~~l~~~~~ 159 (292)
T COG0790 91 RDKTKAADWYRCAAAD--------GLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA---ALAMYRLGLAYL 159 (292)
T ss_pred ccHHHHHHHHHHHhhc--------ccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH---HHHHHHHHHHHH
Confidence 3567788888876643 345677778888875 4478889999998887543220 012344444443
Q ss_pred hcc-------CHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHH----cCChHHHHHHHHHH
Q 003918 473 RHK-------NFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEES----LGNLESTRAVYERI 541 (786)
Q Consensus 473 ~~g-------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~a 541 (786)
..+ +...|...|.++-.... +.....++.++.. ..++.+|...|.++
T Consensus 160 ~g~~~~~~~~~~~~A~~~~~~aa~~~~----------------------~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~A 217 (292)
T COG0790 160 SGLQALAVAYDDKKALYLYRKAAELGN----------------------PDAQLLLGRMYEKGLGVPRDLKKAFRWYKKA 217 (292)
T ss_pred cChhhhcccHHHHhHHHHHHHHHHhcC----------------------HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHH
Confidence 321 22356666666554332 2333334444422 23667777777777
Q ss_pred HhhccCCHHHHHHHHHHHHHcc
Q 003918 542 LDLRIATPQIIINYALLLEEHK 563 (786)
Q Consensus 542 l~~~p~~~~~~~~~~~~~~~~g 563 (786)
-+... +.....++ ++...|
T Consensus 218 a~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 218 AEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred HHCCC--HHHHHHHH-HHHhcC
Confidence 77543 55555566 444444
No 365
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=73.49 E-value=66 Score=28.56 Aligned_cols=56 Identities=13% Similarity=0.093 Sum_probs=48.4
Q ss_pred HHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 003918 523 DLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKI 578 (786)
Q Consensus 523 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 578 (786)
..-...++.+.+..+++-..-..|+.+.+-.--+.+++..|++.+|+.+++.....
T Consensus 18 ~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 18 MYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 33345788999999999888889999999888999999999999999999988874
No 366
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=73.35 E-value=61 Score=35.56 Aligned_cols=126 Identities=11% Similarity=0.059 Sum_probs=80.3
Q ss_pred CChHHHHHHHHHHHhhccCCHHHHHHH--HHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHH
Q 003918 529 GNLESTRAVYERILDLRIATPQIIINY--ALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLER 606 (786)
Q Consensus 529 g~~~~A~~~~~~al~~~p~~~~~~~~~--~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 606 (786)
|...-+...+...+.++|.++.+.... ...+...+....+.-.+..++.. +|++......++..+.. ..+...-
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~L~~ale~--~~~~~~~ 120 (620)
T COG3914 45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSV--NPENCPAVQNLAAALEL--DGLQFLA 120 (620)
T ss_pred CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhc--CcccchHHHHHHHHHHH--hhhHHHH
Confidence 344446667777777778888775544 44455567776777777777775 68777777776655443 2233445
Q ss_pred HHHHHHHHHhhCCccCcHHHHHH------HHHHHHHcCCHHHHHHHHHHHHhcCCCCchh
Q 003918 607 ARELFENAVETAPADAVKPLYLQ------YAKLEEDYGLAKRAMKVYDQATKAVPNHEKL 660 (786)
Q Consensus 607 A~~~~~~al~~~p~~~~~~~~~~------~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 660 (786)
+...-+.+....|. +...... ++......|+..++....+++.+..|.++.+
T Consensus 121 ~~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~ 178 (620)
T COG3914 121 LADISEIAEWLSPD--NAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRV 178 (620)
T ss_pred HHHHHHHHHhcCcc--hHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhh
Confidence 55555557777776 3333333 3566666778888888888888888876433
No 367
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=71.33 E-value=1e+02 Score=34.01 Aligned_cols=133 Identities=16% Similarity=0.061 Sum_probs=84.3
Q ss_pred HHHHHHHHHhccCCCccCCCcHHHHHHH--HHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHH
Q 003918 402 QILTYTEAVRTVDPMKAVGKPHTLWVAF--AKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKG 479 (786)
Q Consensus 402 a~~~~~~al~~~~~~~~~~~~~~~~~~~--a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~ 479 (786)
++..+...+ .+++ .++.+.... .-.+...++...+...+..++..+|.+. .....++......|....
T Consensus 50 ~~~a~~~~~-~~~~-----~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~L~~ale~~~~~~~ 119 (620)
T COG3914 50 AIYALLLGI-AIND-----VNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENC----PAVQNLAAALELDGLQFL 119 (620)
T ss_pred HHHHHHccC-ccCC-----CCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccc----hHHHHHHHHHHHhhhHHH
Confidence 444444444 2444 345554333 5455567888888999999999999987 666777666555665555
Q ss_pred HHHHH-HHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHH
Q 003918 480 ALELM-RRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALL 558 (786)
Q Consensus 480 A~~~~-~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 558 (786)
+...+ ..+....|... .. +..-...+. .+.....+|+..++....+++....|.++.+...+...
T Consensus 120 ~~~~~~~~a~~~~~~~~----------~~---~~~~~~~~~-~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 120 ALADISEIAEWLSPDNA----------EF---LGHLIRFYQ-LGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHHHHHHHHHhcCcchH----------HH---HhhHHHHHH-HHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 55444 44665555110 00 001122333 57777788999999999999999999988776665544
No 368
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=70.95 E-value=86 Score=28.82 Aligned_cols=96 Identities=9% Similarity=0.002 Sum_probs=63.8
Q ss_pred CHHHHHHHHHhhc---CCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHH-----HcCChhHHHHHHHHHHhccCC
Q 003918 384 NVEQWHRRVKIFE---GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYE-----TYKDIANARVIFDKAVQVNYK 455 (786)
Q Consensus 384 ~~~~~~~~~~~~~---~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~-----~~~~~~~A~~~~~~al~~~p~ 455 (786)
.++.-..++..++ .+++.|.++|..-... + ..+...+.|+.++. ..+++..|+..|..+-.. +
T Consensus 33 ~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCde-n------~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~--n 103 (248)
T KOG4014|consen 33 RPESCQLLGDYLEGIQKNFQAAVKVFKKNCDE-N------SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA--N 103 (248)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhcccc-c------CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc--C
Confidence 3444455555554 6899999999885532 1 35677788887665 346788999999988764 3
Q ss_pred ChhhHHHHHHHHHHHHHh-----cc--CHHHHHHHHHHHhcCCc
Q 003918 456 TVDHLASIWCEWAEMELR-----HK--NFKGALELMRRATAEPS 492 (786)
Q Consensus 456 ~~~~~~~~~~~~a~~~~~-----~g--~~~~A~~~~~~al~~~~ 492 (786)
++ ......+.++.. .+ +...|++++.|+.....
T Consensus 104 ~~----~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~~ 143 (248)
T KOG4014|consen 104 IP----QACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLED 143 (248)
T ss_pred CH----HHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCCC
Confidence 34 444444444321 22 47899999999987765
No 369
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=69.71 E-value=7.9 Score=23.87 Aligned_cols=26 Identities=12% Similarity=0.100 Sum_probs=14.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003918 736 WNRWHEFEVNHGNEDTFREMLRIKRS 761 (786)
Q Consensus 736 ~~~~~~~~~~~G~~~~a~~~~~~~~~ 761 (786)
|..++..+.+.|+.++|.+++..++.
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55555555666666666666554443
No 370
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=69.36 E-value=7.3 Score=23.36 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHhh
Q 003918 251 LWTSLADYYIRRELFEKARDIFEEGMM 277 (786)
Q Consensus 251 ~~~~la~~y~~~g~~~~A~~~~~~al~ 277 (786)
.|..+.+.|.+.|++++|.++|++..+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 477888899999999999999998764
No 371
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=67.72 E-value=7.9 Score=23.19 Aligned_cols=24 Identities=13% Similarity=0.015 Sum_probs=12.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 003918 736 WNRWHEFEVNHGNEDTFREMLRIK 759 (786)
Q Consensus 736 ~~~~~~~~~~~G~~~~a~~~~~~~ 759 (786)
|..+++.+.+.|+.++|.++++.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M 26 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEM 26 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHH
Confidence 445555555555555555555433
No 372
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=66.85 E-value=1.4e+02 Score=29.71 Aligned_cols=34 Identities=15% Similarity=0.105 Sum_probs=20.5
Q ss_pred ccCCHHHHHHHHHH-HHHcccHHHHHHHHHHHHhh
Q 003918 545 RIATPQIIINYALL-LEEHKYFEDAFRVYERGVKI 578 (786)
Q Consensus 545 ~p~~~~~~~~~~~~-~~~~g~~~~A~~~~~~al~~ 578 (786)
.|..++.+...+-+ |...|+...|...+..-++.
T Consensus 136 ~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 136 YPSEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp SS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 45555666665544 56678888887777655544
No 373
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.78 E-value=2e+02 Score=31.44 Aligned_cols=70 Identities=13% Similarity=0.088 Sum_probs=45.3
Q ss_pred CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCc
Q 003918 421 KPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPS 492 (786)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~ 492 (786)
.++......+..+...|+.+.|+..|+.++...-... ....+...+-...-..++.+|...+....+...
T Consensus 265 ~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~--~~l~~fE~aw~~v~~~~~~~aad~~~~L~desd 334 (546)
T KOG3783|consen 265 KGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQV--KSLMVFERAWLSVGQHQYSRAADSFDLLRDESD 334 (546)
T ss_pred CCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhh
Confidence 3455557778888888888888888888876111111 113344455555556678888888888776655
No 374
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=66.76 E-value=21 Score=22.87 Aligned_cols=30 Identities=13% Similarity=-0.048 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHH--HHHHHhcCC
Q 003918 626 LYLQYAKLEEDYGLAKRAMKV--YDQATKAVP 655 (786)
Q Consensus 626 ~~~~~a~~~~~~g~~~~A~~~--~~~~l~~~p 655 (786)
.|..+|-.....|++++|+.+ |+-+....|
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 455566666667777777777 335444443
No 375
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=66.27 E-value=13 Score=24.19 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 003918 550 QIIINYALLLEEHKYFEDAFRVYERGVKI 578 (786)
Q Consensus 550 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 578 (786)
+++..+|.+-...++|++|+.-|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35667777777888888888888888775
No 376
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.20 E-value=2.1e+02 Score=31.53 Aligned_cols=158 Identities=13% Similarity=0.117 Sum_probs=94.5
Q ss_pred CChHHHHHHHHHHHhh------------ccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcC----------------
Q 003918 529 GNLESTRAVYERILDL------------RIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFK---------------- 580 (786)
Q Consensus 529 g~~~~A~~~~~~al~~------------~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~---------------- 580 (786)
..+++|...|.-+... .|-+.+.+++++.+...+|+.+-|-.+++|++=.+.
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL 331 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL 331 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence 3455666666666554 355678899999999999988877777776664321
Q ss_pred ---CCChHHHHHH---HHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHH-HHcCCHHHHHHHHHHH---
Q 003918 581 ---YPHVKDIWVT---YLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLE-EDYGLAKRAMKVYDQA--- 650 (786)
Q Consensus 581 ---~p~~~~~~~~---~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~-~~~g~~~~A~~~~~~~--- 650 (786)
.|.+-.++.. |+..+. ..|.+.-|-+.-+-.++.+|.+ ++.....+++.+ .+..+|+=-+.+++..
T Consensus 332 ~y~~~eNR~FyL~l~r~m~~l~---~RGC~rTA~E~cKlllsLdp~e-DPl~~l~~ID~~ALrareYqwiI~~~~~~e~~ 407 (665)
T KOG2422|consen 332 PYIYPENRQFYLALFRYMQSLA---QRGCWRTALEWCKLLLSLDPSE-DPLGILYLIDIYALRAREYQWIIELSNEPENM 407 (665)
T ss_pred cccchhhHHHHHHHHHHHHHHH---hcCChHHHHHHHHHHhhcCCcC-CchhHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 1333333332 233333 3477899999999999999974 234444444443 3456666656555544
Q ss_pred --HhcCCCCchhhHHHHHHHHHHHhc--ChhHHHHHHHHHHHhcCCC
Q 003918 651 --TKAVPNHEKLGMYEIYIARAAEIF--GVPKTREIYEQAIESGLPD 693 (786)
Q Consensus 651 --l~~~p~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~~p~ 693 (786)
+...|+- .+.+..++.... +.. +...|+..+.+|+.. .|.
T Consensus 408 n~l~~~PN~-~yS~AlA~f~l~-~~~~~~rqsa~~~l~qAl~~-~P~ 451 (665)
T KOG2422|consen 408 NKLSQLPNF-GYSLALARFFLR-KNEEDDRQSALNALLQALKH-HPL 451 (665)
T ss_pred ccHhhcCCc-hHHHHHHHHHHh-cCChhhHHHHHHHHHHHHHh-CcH
Confidence 3344431 233333333321 222 256788899999988 773
No 377
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.80 E-value=85 Score=34.82 Aligned_cols=103 Identities=8% Similarity=0.088 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003918 462 SIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERI 541 (786)
Q Consensus 462 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 541 (786)
.+|...+.. .+..+|..+++.|...+.-.|.+...+ .-..+...++-+|..+.+.++|.++++.|
T Consensus 356 iLWn~A~~~-F~~~~Y~~s~~~y~~Sl~~i~~D~~~~--------------~FaK~qR~l~~CYL~L~QLD~A~E~~~EA 420 (872)
T KOG4814|consen 356 LLWNTAKKL-FKMEKYVVSIRFYKLSLKDIISDNYSD--------------RFAKIQRALQVCYLKLEQLDNAVEVYQEA 420 (872)
T ss_pred HHHHhhHHH-HHHHHHHHHHHHHHHHHHhccchhhhh--------------HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 455555443 567789999999988887555221000 12355666777888888999999999999
Q ss_pred HhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhc
Q 003918 542 LDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIF 579 (786)
Q Consensus 542 l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 579 (786)
-+.+|.++-.-.........-|+-++|+.+..+....+
T Consensus 421 E~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 421 EEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence 99999998777777777777888899998887776654
No 378
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=64.91 E-value=27 Score=34.37 Aligned_cols=62 Identities=21% Similarity=0.099 Sum_probs=54.0
Q ss_pred HHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHH
Q 003918 524 LEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDI 587 (786)
Q Consensus 524 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~ 587 (786)
.+...++++.|..+-++.+..+|.+|.-+-..|.+|.+.|-+..|++-++..++. +|+.+..
T Consensus 190 ~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~--~P~~~~a 251 (269)
T COG2912 190 ALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH--CPDDPIA 251 (269)
T ss_pred HHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh--CCCchHH
Confidence 4456778999999999999999999999999999999999999999999998887 5776553
No 379
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=64.91 E-value=3.2e+02 Score=33.12 Aligned_cols=78 Identities=17% Similarity=0.283 Sum_probs=42.4
Q ss_pred ChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHH
Q 003918 603 KLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREI 682 (786)
Q Consensus 603 ~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~ 682 (786)
.++.-.+-|++|+.....- ....|-..-++-.++|.+++|..+|.-..+. .-.++.+|+.+....+.+++|--.
T Consensus 888 ~ID~~L~ry~~AL~hLs~~-~~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~-----~k~i~~~ya~hL~~~~~~~~Aal~ 961 (1265)
T KOG1920|consen 888 KIDDYLKRYEDALSHLSEC-GETYFPECKNYIKKHGLYDEALALYKPDSEK-----QKVIYEAYADHLREELMSDEAALM 961 (1265)
T ss_pred eHHHHHHHHHHHHHHHHHc-CccccHHHHHHHHhcccchhhhheeccCHHH-----HHHHHHHHHHHHHHhccccHHHHH
Confidence 4666677777777652210 0123444445555678777777766543322 234555566555555566666655
Q ss_pred HHHH
Q 003918 683 YEQA 686 (786)
Q Consensus 683 ~~~a 686 (786)
|+++
T Consensus 962 Ye~~ 965 (1265)
T KOG1920|consen 962 YERC 965 (1265)
T ss_pred HHHh
Confidence 5554
No 380
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=63.85 E-value=14 Score=24.94 Aligned_cols=25 Identities=20% Similarity=0.505 Sum_probs=21.4
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHh
Q 003918 427 VAFAKLYETYKDIANARVIFDKAVQ 451 (786)
Q Consensus 427 ~~~a~~~~~~~~~~~A~~~~~~al~ 451 (786)
+.+|..|...|+.+.|+.+++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5678888999999999999998885
No 381
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=63.41 E-value=69 Score=24.90 Aligned_cols=51 Identities=4% Similarity=-0.001 Sum_probs=35.2
Q ss_pred HcCChHHHHHHHHHHHhhccCCHHHHHHHH---HHHHHcccHHHHHHHHHHHHh
Q 003918 527 SLGNLESTRAVYERILDLRIATPQIIINYA---LLLEEHKYFEDAFRVYERGVK 577 (786)
Q Consensus 527 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~---~~~~~~g~~~~A~~~~~~al~ 577 (786)
...+..+|+..++++++..++.+.-|..+| ..+...|+++++++.--+-+.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888888888888777776665554 456667777776665444433
No 382
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=63.22 E-value=18 Score=22.17 Aligned_cols=26 Identities=12% Similarity=0.073 Sum_probs=14.1
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHh
Q 003918 552 IINYALLLEEHKYFEDAFRVYERGVK 577 (786)
Q Consensus 552 ~~~~~~~~~~~g~~~~A~~~~~~al~ 577 (786)
|..+...+.+.|++++|.++|.+...
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44445555555555555555555544
No 383
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=63.13 E-value=1.8e+02 Score=29.49 Aligned_cols=96 Identities=16% Similarity=0.187 Sum_probs=47.8
Q ss_pred ChHHHHHHHHHHHhhccCCHHH---HHHHHHHHHHcc-------cHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHh
Q 003918 530 NLESTRAVYERILDLRIATPQI---IINYALLLEEHK-------YFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRY 599 (786)
Q Consensus 530 ~~~~A~~~~~~al~~~p~~~~~---~~~~~~~~~~~g-------~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~ 599 (786)
+..+|...|.++.+. .++.. ...++.++..-+ +...|+..|.++-... ++......+ .++..
T Consensus 128 d~~~A~~~~~~Aa~~--g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~----~~~a~~~lg-~~y~~- 199 (292)
T COG0790 128 DLVKALKYYEKAAKL--GNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG----NPDAQLLLG-RMYEK- 199 (292)
T ss_pred CHHHHHHHHHHHHHc--CChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc----CHHHHHHHH-HHHHc-
Confidence 556666666666664 22222 444454444321 2236677777766642 222333222 22221
Q ss_pred C---CCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcC
Q 003918 600 G---KTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYG 638 (786)
Q Consensus 600 ~---~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g 638 (786)
+ ..++.+|...|+++.+... ......++ +....|
T Consensus 200 G~Gv~~d~~~A~~wy~~Aa~~g~----~~a~~~~~-~~~~~g 236 (292)
T COG0790 200 GLGVPRDLKKAFRWYKKAAEQGD----GAACYNLG-LMYLNG 236 (292)
T ss_pred CCCCCcCHHHHHHHHHHHHHCCC----HHHHHHHH-HHHhcC
Confidence 2 2356777777777776654 23445555 444444
No 384
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=63.10 E-value=15 Score=22.55 Aligned_cols=27 Identities=11% Similarity=0.148 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003918 735 FWNRWHEFEVNHGNEDTFREMLRIKRS 761 (786)
Q Consensus 735 ~~~~~~~~~~~~G~~~~a~~~~~~~~~ 761 (786)
.|..++..+.+.|+.+.|.+++..|+.
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455555555555555555555554443
No 385
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=62.12 E-value=2e+02 Score=30.61 Aligned_cols=60 Identities=15% Similarity=0.130 Sum_probs=35.7
Q ss_pred HHHHHHHcccHHHHHHHHHHHHhhcCCCChHH--HHHHHHHHHHHHhCCCChHHHHHHHHHHHhh
Q 003918 555 YALLLEEHKYFEDAFRVYERGVKIFKYPHVKD--IWVTYLSKFVKRYGKTKLERARELFENAVET 617 (786)
Q Consensus 555 ~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 617 (786)
.+.-....++|..|.++++.+... -|.... .+..++. .+..=..-++.+|.+.+++.+..
T Consensus 137 ~a~~l~n~~~y~aA~~~l~~l~~r--l~~~~~~~~~~~l~~-~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 137 RAKELFNRYDYGAAARILEELLRR--LPGREEYQRYKDLCE-GYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh--CCchhhHHHHHHHHH-HHHHHHccCHHHHHHHHHHHHHH
Confidence 355566778888888888888874 244333 2222111 12211345678888888887655
No 386
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=61.71 E-value=3.5e+02 Score=32.53 Aligned_cols=103 Identities=11% Similarity=0.021 Sum_probs=68.0
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHH-HHHHHHHHH--hcc---CHHHHHHHHHHHhcCCchHHhhhhh
Q 003918 427 VAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASI-WCEWAEMEL--RHK---NFKGALELMRRATAEPSVEVRRRVA 500 (786)
Q Consensus 427 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~-~~~~a~~~~--~~g---~~~~A~~~~~~al~~~~~~~~~~~~ 500 (786)
...-+.+.....+++|...|+++-...|...+..... -..+.-++. ..| .+++|+.-|++....+.
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 550 (932)
T PRK13184 479 LAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVG-------- 550 (932)
T ss_pred ccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCC--------
Confidence 3344456666778899999999988888765443222 222222221 122 46777777777665444
Q ss_pred ccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHH
Q 003918 501 ADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQ 550 (786)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 550 (786)
.+-=|..-+.+|..+|++++-+++|.-|++..|++|.
T Consensus 551 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (932)
T PRK13184 551 -------------APLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPE 587 (932)
T ss_pred -------------CchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCc
Confidence 3344566677888889999999999999988888764
No 387
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=61.69 E-value=43 Score=36.07 Aligned_cols=90 Identities=12% Similarity=-0.034 Sum_probs=75.6
Q ss_pred chhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcC---CcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHhcCCChHH
Q 003918 81 HPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQ---KFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIET 157 (786)
Q Consensus 81 ~~~~~~A~~~~~~al~~~p~~~~~w~~~~~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~w~~~~~~~~~~~~~~~~ 157 (786)
.+....++..|.+++...|....++..++..+++. ++.-.|.+-...|++.+|.. ...|..+..++...+.+ .+
T Consensus 387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~--~kah~~la~aL~el~r~-~e 463 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSI--QKAHFRLARALNELTRY-LE 463 (758)
T ss_pred hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHH--HHHHHHHHHHHHHHhhH-HH
Confidence 36678899999999999999999999999998864 46667788888999999954 78889889988888999 99
Q ss_pred HHHHHHHHHccCCCCH
Q 003918 158 SLRVYRRYLKYDPSHI 173 (786)
Q Consensus 158 A~~~~~~~l~~~p~~~ 173 (786)
|+.....+....|.+.
T Consensus 464 al~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 464 ALSCHWALQMSFPTDV 479 (758)
T ss_pred hhhhHHHHhhcCchhh
Confidence 9988887777788654
No 388
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=61.62 E-value=39 Score=33.48 Aligned_cols=59 Identities=17% Similarity=0.007 Sum_probs=43.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 003918 519 TFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVK 577 (786)
Q Consensus 519 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 577 (786)
..-+..+...|.+.+|.++.++++..+|-+.+.|..+-..+...|+--++.+.|++.-+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 33455667778888888888888888888888888888888888876666666665544
No 389
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=61.57 E-value=1.1e+02 Score=37.27 Aligned_cols=166 Identities=18% Similarity=0.116 Sum_probs=100.5
Q ss_pred cCCchhHHH------HHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhcc----CCChhhHHHHHH
Q 003918 396 EGNPTKQIL------TYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVN----YKTVDHLASIWC 465 (786)
Q Consensus 396 ~~~~~~a~~------~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~~~~ 465 (786)
++.+.++.+ ++......+.| .....+..++..+...|+.++|+..-.++.-.. ..+.......+.
T Consensus 945 e~~~~~~~~~~~slnl~~~v~~~~h~-----~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~ 1019 (1236)
T KOG1839|consen 945 EDGFSEAYELPESLNLLNNVMGVLHP-----EVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYG 1019 (1236)
T ss_pred ccchhhhhhhhhhhhHHHHhhhhcch-----hHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhh
Confidence 455555555 55544433444 567788999999999999999998877765422 112222236667
Q ss_pred HHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhc
Q 003918 466 EWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLR 545 (786)
Q Consensus 466 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 545 (786)
.++.++...++...|...+.++...-.-.. .+ ..+....+......++...++++.|....+.|+...
T Consensus 1020 nlal~~f~~~~~~~al~~~~ra~~l~~Ls~-----ge-------~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1020 NLALYEFAVKNLSGALKSLNRALKLKLLSS-----GE-------DHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred HHHHHHHhccCccchhhhHHHHHHhhcccc-----CC-------CCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 777777888888888888888764311000 00 000122333444555556678899999999998852
Q ss_pred -----cC---CHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 003918 546 -----IA---TPQIIINYALLLEEHKYFEDAFRVYERGVKI 578 (786)
Q Consensus 546 -----p~---~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 578 (786)
|. ....+..++++....|++..|+...+....+
T Consensus 1088 ~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1088 KKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred hhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 11 2234555566666666666666555544443
No 390
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.38 E-value=2.5e+02 Score=31.25 Aligned_cols=50 Identities=12% Similarity=-0.009 Sum_probs=38.0
Q ss_pred HHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 003918 524 LEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKI 578 (786)
Q Consensus 524 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 578 (786)
+..+.|+++.|.++-.++ +++.=|-.+|.+....|++..|.++|.++...
T Consensus 646 lal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred hhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 335677777776654443 67778999999999999999999999888663
No 391
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=60.34 E-value=2.3e+02 Score=29.84 Aligned_cols=139 Identities=14% Similarity=0.144 Sum_probs=76.6
Q ss_pred HHHHHHH--HHHHHHcccHHHHHHHHHHHHhhcCC--CChH-----HHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCC
Q 003918 549 PQIIINY--ALLLEEHKYFEDAFRVYERGVKIFKY--PHVK-----DIWVTYLSKFVKRYGKTKLERARELFENAVETAP 619 (786)
Q Consensus 549 ~~~~~~~--~~~~~~~g~~~~A~~~~~~al~~~~~--p~~~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 619 (786)
..+|..+ ..+.....++.+|.++-+..+..... -... .+|.. +...++ ..++....+..+..-+....
T Consensus 124 i~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy-~~l~~E--~~~~l~~~rs~l~~~lrtAt 200 (493)
T KOG2581|consen 124 IEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFY-LYLSYE--LEGRLADIRSFLHALLRTAT 200 (493)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHH-HHHHHH--hhcchHHHHHHHHHHHHHhh
Confidence 3444444 34456678888888888877764211 1111 22332 211222 33566777777776666421
Q ss_pred ---ccCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHH----HHhcChhHHHHHHHHHHHhcC
Q 003918 620 ---ADAV-KPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARA----AEIFGVPKTREIYEQAIESGL 691 (786)
Q Consensus 620 ---~~~~-~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~----~~~~~~~~A~~~~~~al~~~~ 691 (786)
++.. ..+...+-..+.-.+.++.|-....+.. .|....-..|..|.... .-.++|..|.++|-.|+.. .
T Consensus 201 Lrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~--~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rk-a 277 (493)
T KOG2581|consen 201 LRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV--YPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRK-A 277 (493)
T ss_pred hcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc--CccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHh-C
Confidence 1111 2233345556666778888877776654 34433223444444322 1257888888888888888 7
Q ss_pred CC
Q 003918 692 PD 693 (786)
Q Consensus 692 p~ 693 (786)
|.
T Consensus 278 pq 279 (493)
T KOG2581|consen 278 PQ 279 (493)
T ss_pred cc
Confidence 76
No 392
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=60.04 E-value=17 Score=23.61 Aligned_cols=28 Identities=11% Similarity=0.258 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 003918 425 LWVAFAKLYETYKDIANARVIFDKAVQV 452 (786)
Q Consensus 425 ~~~~~a~~~~~~~~~~~A~~~~~~al~~ 452 (786)
++..+|.+-...++|++|..=|++++.+
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4566666666777777777777776653
No 393
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.71 E-value=1.7e+02 Score=30.65 Aligned_cols=158 Identities=13% Similarity=0.062 Sum_probs=73.3
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 003918 465 CEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDL 544 (786)
Q Consensus 465 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 544 (786)
..++..+..-|+++.|++.|-|+-.-..+.. .....|.....+-.-.|++......-.++.+.
T Consensus 154 ~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~k-----------------hvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 154 EDLGDHYLDCGQLDNALRCYSRARDYCTSAK-----------------HVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHhccHHHHHhhhhhhhhhhcchH-----------------HHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 3444445555666666666666443332100 23445555555544455554444444443332
Q ss_pred ----------ccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcC------CCChHHHHHHHHHHHHHHhCCCChH---
Q 003918 545 ----------RIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFK------YPHVKDIWVTYLSKFVKRYGKTKLE--- 605 (786)
Q Consensus 545 ----------~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~------~p~~~~~~~~~~~~~~~~~~~~~~~--- 605 (786)
-|. .+...-|......+++..|...|-.+..-.. .|.+..++-... .+. .+...++.
T Consensus 217 ~~~~~~~~q~v~~--kl~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLc-ALA-tfdr~~Lk~~v 292 (466)
T KOG0686|consen 217 PDANENLAQEVPA--KLKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLC-ALA-TFDRQDLKLNV 292 (466)
T ss_pred chhhhhHHHhcCc--chHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhH-hhc-cCCHHHHHHHH
Confidence 111 2222333333444467777666654433211 255555444321 111 11101111
Q ss_pred HHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003918 606 RARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQA 650 (786)
Q Consensus 606 ~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~ 650 (786)
..-..|...++..|. ++..++.++ .+++....+++.+.
T Consensus 293 i~n~~Fk~flel~Pq-----lr~il~~fy--~sky~~cl~~L~~~ 330 (466)
T KOG0686|consen 293 IKNESFKLFLELEPQ-----LREILFKFY--SSKYASCLELLREI 330 (466)
T ss_pred HcchhhhhHHhcChH-----HHHHHHHHh--hhhHHHHHHHHHHh
Confidence 223456666666665 666666665 46777777766653
No 394
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.34 E-value=1.3e+02 Score=33.22 Aligned_cols=95 Identities=20% Similarity=0.179 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccC
Q 003918 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADG 503 (786)
Q Consensus 424 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 503 (786)
......+.++.++|-.++| |.+.++.. - .-++..+.|+++.|.++..++
T Consensus 615 ~~rt~va~Fle~~g~~e~A-------L~~s~D~d-----~---rFelal~lgrl~iA~~la~e~---------------- 663 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQA-------LELSTDPD-----Q---RFELALKLGRLDIAFDLAVEA---------------- 663 (794)
T ss_pred hhhhhHHhHhhhccchHhh-------hhcCCChh-----h---hhhhhhhcCcHHHHHHHHHhh----------------
Confidence 3456677777777655544 44444331 1 122235678888887766554
Q ss_pred ChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHH
Q 003918 504 NEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFE 566 (786)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~ 566 (786)
++..-|..++++....|++..|.++|.++.. |..+..++...|+-+
T Consensus 664 ---------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d--------~~~LlLl~t~~g~~~ 709 (794)
T KOG0276|consen 664 ---------NSEVKWRQLGDAALSAGELPLASECFLRARD--------LGSLLLLYTSSGNAE 709 (794)
T ss_pred ---------cchHHHHHHHHHHhhcccchhHHHHHHhhcc--------hhhhhhhhhhcCChh
Confidence 4567799999999999999999999999865 333444445555544
No 395
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=58.13 E-value=2.2e+02 Score=28.93 Aligned_cols=99 Identities=12% Similarity=0.038 Sum_probs=59.9
Q ss_pred hhhhhcCCCCHHHHHHHHHhhcCCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccC
Q 003918 375 SVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNY 454 (786)
Q Consensus 375 ~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 454 (786)
..++++||....++..++.-......+|.++|+++++..+ ..+.-.+.....|...+| ..+.+-
T Consensus 208 ~~ALeIN~eCA~AyvLLAEEEa~Ti~~AE~l~k~ALka~e----------~~yr~sqq~qh~~~~~da------~~rRDt 271 (556)
T KOG3807|consen 208 YQALEINNECATAYVLLAEEEATTIVDAERLFKQALKAGE----------TIYRQSQQCQHQSPQHEA------QLRRDT 271 (556)
T ss_pred HHHHhcCchhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHH----------HHHhhHHHHhhhccchhh------hhhccc
Confidence 3468899999998888887666677889999999986422 112211222222222222 122222
Q ss_pred CChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCc
Q 003918 455 KTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPS 492 (786)
Q Consensus 455 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~ 492 (786)
++ +.-+-..++.+-.+.|+..+|.+.|+...+..|
T Consensus 272 -nv--l~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 272 -NV--LVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred -ch--hhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 22 012334466677788999999999988887766
No 396
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=58.07 E-value=1.2e+02 Score=25.83 Aligned_cols=100 Identities=15% Similarity=0.100 Sum_probs=57.9
Q ss_pred HHHHHHH--HHHHcCChhHHHHHHHHHHhccCC----Chhh---H-HHHHHHHHHHHHhccCHHHHHHHHHHHh------
Q 003918 425 LWVAFAK--LYETYKDIANARVIFDKAVQVNYK----TVDH---L-ASIWCEWAEMELRHKNFKGALELMRRAT------ 488 (786)
Q Consensus 425 ~~~~~a~--~~~~~~~~~~A~~~~~~al~~~p~----~~~~---~-~~~~~~~a~~~~~~g~~~~A~~~~~~al------ 488 (786)
.|..+.+ -...-|-+++|-.-++++....-. ...+ + .-.+-.++......|++++++..-++++
T Consensus 9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR 88 (144)
T PF12968_consen 9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR 88 (144)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc
Confidence 3444433 344568889998888888764322 1111 1 1233334555567788877666555554
Q ss_pred -cCCchHHhhhhhccCChhHHHHhhhcHHHHHH----HHHHHHHcCChHHHHHHHHHHHhh
Q 003918 489 -AEPSVEVRRRVAADGNEPVQMKLHKSLRLWTF----YVDLEESLGNLESTRAVYERILDL 544 (786)
Q Consensus 489 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~g~~~~A~~~~~~al~~ 544 (786)
++.. +....|+. .+......|..++|...|+++-+.
T Consensus 89 GEL~q--------------------deGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 89 GELHQ--------------------DEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp --TTS--------------------THHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ccccc--------------------ccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 4444 44566654 344566789999999999998774
No 397
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=57.06 E-value=1.3e+02 Score=26.20 Aligned_cols=52 Identities=17% Similarity=0.092 Sum_probs=34.9
Q ss_pred HhcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHcc
Q 003918 672 EIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQF 726 (786)
Q Consensus 672 ~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 726 (786)
..|.-++-.+++....+.+.+ .+.+.+.++.+|.+.|+..+|.+++.+|.+.
T Consensus 98 ~~~kkDqLdki~~~l~kn~~~---~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 98 KQGKKDQLDKIYNELKKNEEI---NPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HTT-HHHHHHHHHHH-----S----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HhccHHHHHHHHHHHhhccCC---CHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 456666666666665533133 3678899999999999999999999998875
No 398
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=56.24 E-value=26 Score=23.30 Aligned_cols=31 Identities=13% Similarity=0.140 Sum_probs=22.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHcCCcHHH
Q 003918 90 TFERALVTMHKMPRIWIMYLETLTSQKFITK 120 (786)
Q Consensus 90 ~~~~al~~~p~~~~~w~~~~~~~~~~~~~~~ 120 (786)
.|.+|+-.+|.+.+.++-|+.++.++|+...
T Consensus 4 all~AI~~~P~ddt~RLvYADWL~e~gdp~r 34 (42)
T TIGR02996 4 ALLRAILAHPDDDTPRLVYADWLDEHGDPAR 34 (42)
T ss_pred HHHHHHHhCCCCcchHHHHHHHHHHcCCHHH
Confidence 4566777777777777778877777776643
No 399
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=56.15 E-value=53 Score=35.40 Aligned_cols=86 Identities=14% Similarity=0.086 Sum_probs=49.9
Q ss_pred ChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcc---cHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHH
Q 003918 530 NLESTRAVYERILDLRIATPQIIINYALLLEEHK---YFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLER 606 (786)
Q Consensus 530 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g---~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 606 (786)
....++..|.+++...|....++.+++.++.+.+ +.-.|+.--..++.+ +|....+|..+...+.. .+.+.+
T Consensus 389 ~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl--n~s~~kah~~la~aL~e---l~r~~e 463 (758)
T KOG1310|consen 389 IVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRL--NPSIQKAHFRLARALNE---LTRYLE 463 (758)
T ss_pred HHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC--ChHHHHHHHHHHHHHHH---HhhHHH
Confidence 3456667777777777777677777776666653 333444444455554 56666666654444432 245666
Q ss_pred HHHHHHHHHhhCCc
Q 003918 607 ARELFENAVETAPA 620 (786)
Q Consensus 607 A~~~~~~al~~~p~ 620 (786)
|.+....+....|.
T Consensus 464 al~~~~alq~~~Pt 477 (758)
T KOG1310|consen 464 ALSCHWALQMSFPT 477 (758)
T ss_pred hhhhHHHHhhcCch
Confidence 66666655555664
No 400
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=55.50 E-value=4.4e+02 Score=31.73 Aligned_cols=301 Identities=13% Similarity=0.041 Sum_probs=142.6
Q ss_pred chhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHH--HHHHHHHHHhccC
Q 003918 399 PTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASI--WCEWAEMELRHKN 476 (786)
Q Consensus 399 ~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~--~~~~a~~~~~~g~ 476 (786)
+++|+.-|++.-. .| ..|--|.+-|..|...|++++=++.|.-|++..|++|.-. -+ .+.+-..+....+
T Consensus 535 ~~~~~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 606 (932)
T PRK13184 535 FTQALSEFSYLHG--GV-----GAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEIS-RLRDHLVYRLHESLYKH 606 (932)
T ss_pred HHHHHHHHHHhcC--CC-----CCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccH-HHHHHHHHHHHHHHHHH
Confidence 4667777777432 22 4567788999999999999999999999999999887321 10 0111111122233
Q ss_pred HHHHHHHHHHHhcCCchHH------------hhhhh------ccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHH
Q 003918 477 FKGALELMRRATAEPSVEV------------RRRVA------ADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVY 538 (786)
Q Consensus 477 ~~~A~~~~~~al~~~~~~~------------~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 538 (786)
...|....--++.+-|..+ .++++ .+. .++. ..+..+-..++- =.|..---..+|
T Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~---~~~~~~~~~~~~ 679 (932)
T PRK13184 607 RREALVFMLLALWIAPEKISSREEEKFLEILYHKQQATLFCQLDK-TPLQ---FRSSKMELFLSF---WSGFTPFLPELF 679 (932)
T ss_pred HHHHHHHHHHHHHhCcccccchHHHHHHHHHHhhccCCceeeccC-chhh---hhhhhHHHHHHH---HhcCchhhHHHH
Confidence 4445444455555544321 01111 000 0000 011111111111 124444555677
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHH---HHHHhhcCCCChHH--HHHHHHHH---HHHHhCCCChHHHHHH
Q 003918 539 ERILDLRIATPQIIINYALLLEEHKYFEDAFRVY---ERGVKIFKYPHVKD--IWVTYLSK---FVKRYGKTKLERAREL 610 (786)
Q Consensus 539 ~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~---~~al~~~~~p~~~~--~~~~~~~~---~~~~~~~~~~~~A~~~ 610 (786)
+++....| -.+..+.--+....|+++-+.+.. ..-+.....|.+.. .|..++.+ +..- .+.+..++.
T Consensus 680 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 754 (932)
T PRK13184 680 QRAWDLRD--YRALADIFYVACDLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEAL---SNKEDYEKA 754 (932)
T ss_pred HHHhhccc--HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHH---HccccHHHH
Confidence 78777633 355555555556778776544433 32222222344432 22221111 1111 112233444
Q ss_pred HHHHHhhCCccCcHHHHH--HHHHHHHHcCCHHHHHHHHHHHHhcCCCCc---hhhHHHHHHHHHHHhcChhHHHHHHHH
Q 003918 611 FENAVETAPADAVKPLYL--QYAKLEEDYGLAKRAMKVYDQATKAVPNHE---KLGMYEIYIARAAEIFGVPKTREIYEQ 685 (786)
Q Consensus 611 ~~~al~~~p~~~~~~~~~--~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~ 685 (786)
|+-.-...|. ..++. .++.-..-.++.+.-....+..-+..+... .+.....+.. .-..+..+|-+++..
T Consensus 755 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 829 (932)
T PRK13184 755 FKHLDNTDPT---LILYAFDLFAIQALLDEEGESIIQLLQLIYDYVSEEERHDHLLVYEIQAH--LWNRDLKKAYKLLNR 829 (932)
T ss_pred HhhhhhCCHH---HHHHHHHHHHHHHHHhccchHHHHHHHHHHhccCChhhhhhhhHHHHHHH--HHhccHHHHHHHHHh
Confidence 4322222222 11111 111111112333333333333333222221 1222333333 335588888888755
Q ss_pred HHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHc
Q 003918 686 AIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQ 725 (786)
Q Consensus 686 al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 725 (786)
.-.. .-......++..||-.+.-.++.+-|...|..+.+
T Consensus 830 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (932)
T PRK13184 830 YPLD-LLLDEYSEAFVLYGCYLALTEDREAAKAHFSGCRE 868 (932)
T ss_pred CChh-hhccccchHHHHHHHHHHhcCchhHHHHHHhhccc
Confidence 3221 11112456888899999999999999999998883
No 401
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=55.46 E-value=2.3e+02 Score=30.06 Aligned_cols=121 Identities=16% Similarity=0.099 Sum_probs=68.9
Q ss_pred hCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHH--HcCCHHHHHHHHHHHHhcCCC-CchhhHHHHHHHHHHHhcC
Q 003918 599 YGKTKLERARELFENAVETAPADAVKPLYLQYAKLEE--DYGLAKRAMKVYDQATKAVPN-HEKLGMYEIYIARAAEIFG 675 (786)
Q Consensus 599 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~--~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~ 675 (786)
+..+++..|..+|+.+....|++.....+..++..|. ...++.+|.+.++..+...-. ......+... ..
T Consensus 142 ~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~-------~~ 214 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKEL-------VE 214 (379)
T ss_pred HhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHH-------HH
Confidence 3668999999999999997555322344555555444 478999999999998765221 0001111111 11
Q ss_pred hhHHHHHHHHHHHhcCCCh---hHHHHHHHHHHHHHH--cCChHHHHHHHHHHHcc
Q 003918 676 VPKTREIYEQAIESGLPDK---DVKAMCLKYAELEKS--LGEIDRARGIYVFASQF 726 (786)
Q Consensus 676 ~~~A~~~~~~al~~~~p~~---~~~~~~~~~~~~~~~--~g~~~~A~~~~~~al~~ 726 (786)
.-++..-+........+.. ....+.-.+.+++++ .|+++.|...+-|+++.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl 270 (379)
T PF09670_consen 215 VLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALEL 270 (379)
T ss_pred HHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 1122222222222101110 123344445556553 69999999999999986
No 402
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=54.30 E-value=1.5e+02 Score=25.92 Aligned_cols=49 Identities=12% Similarity=0.195 Sum_probs=29.4
Q ss_pred HHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHH
Q 003918 432 LYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMR 485 (786)
Q Consensus 432 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~ 485 (786)
.+...+.+.....+++.++..++.++ .+...++.++.+. +.......++
T Consensus 16 ~~~~~~~~~~l~~yLe~~~~~~~~~~----~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 16 LFEKRNLLEELIPYLESALKLNSENP----ALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred HHHhCCcHHHHHHHHHHHHccCccch----hHHHHHHHHHHHH-CHHHHHHHHH
Confidence 34455667777777777777665544 6666666666543 3344444444
No 403
>PRK12798 chemotaxis protein; Reviewed
Probab=53.28 E-value=3.1e+02 Score=29.18 Aligned_cols=223 Identities=13% Similarity=0.051 Sum_probs=135.3
Q ss_pred HcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHH
Q 003918 527 SLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLER 606 (786)
Q Consensus 527 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 606 (786)
.-|++.-.+.+..+-.. .+.+.-+..|..-+-.|+.+++.+.+..+-... .|.....+..++.... +...++.+
T Consensus 93 SGGnP~vlr~L~~~d~~---~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~-l~~~lg~~laLv~a~l--~~~~dP~~ 166 (421)
T PRK12798 93 SGGNPATLRKLLARDKL---GNFDQRLADGALAYLSGRGREARKLLAGVAPEY-LPAELGAYLALVQGNL--MVATDPAT 166 (421)
T ss_pred cCCCHHHHHHHHHcCCC---ChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhh-cCchhhhHHHHHHHHH--hcccCHHH
Confidence 44666555444433221 244555556666777899999998888766543 3555445554433222 23468999
Q ss_pred HHHHHHHHHhhCCccCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHH-HHHHHHHhcChhHHHHHHH
Q 003918 607 ARELFENAVETAPADAVKP-LYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEI-YIARAAEIFGVPKTREIYE 684 (786)
Q Consensus 607 A~~~~~~al~~~p~~~~~~-~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~-~~~~~~~~~~~~~A~~~~~ 684 (786)
|...|..+--..|+....+ ....-..+-.+.|+.+++..+-.+-+..+..++....+.. +.....+..+-. -.+.+.
T Consensus 167 Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~-~~~~l~ 245 (421)
T PRK12798 167 ALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEI-RDARLV 245 (421)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccc-cHHHHH
Confidence 9999999999999832122 2222233445689999999888888888887665543333 222222332222 123356
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHH
Q 003918 685 QAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDT--EFWNRWHEFEVNHGNEDTFREMLR 757 (786)
Q Consensus 685 ~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~~~~--~~~~~~~~~~~~~G~~~~a~~~~~ 757 (786)
..+.. .+......+|+.+++.-.-.|+.+-|+..-++|+...++++.. ..-.+.+-...-..+..++...+.
T Consensus 246 ~~ls~-~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~ 319 (421)
T PRK12798 246 EILSF-MDPERQRELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELS 319 (421)
T ss_pred HHHHh-cCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHh
Confidence 66665 4544467899999999999999999999999999885444211 111111112222355677766664
No 404
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=52.84 E-value=97 Score=30.67 Aligned_cols=64 Identities=13% Similarity=-0.028 Sum_probs=55.6
Q ss_pred HHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHH
Q 003918 471 ELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQ 550 (786)
Q Consensus 471 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 550 (786)
+.+.++++.|..+.++.+...| .++.-+...|-+|.++|.+.-|+.-+...++..|+++.
T Consensus 191 ~~~e~~~~~al~~~~r~l~l~P--------------------~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~ 250 (269)
T COG2912 191 LLRELQWELALRVAERLLDLNP--------------------EDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPI 250 (269)
T ss_pred HHHhhchHHHHHHHHHHHhhCC--------------------CChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence 4567899999999999999988 67777778899999999999999999999999999987
Q ss_pred HHHH
Q 003918 551 IIIN 554 (786)
Q Consensus 551 ~~~~ 554 (786)
+-.-
T Consensus 251 a~~i 254 (269)
T COG2912 251 AEMI 254 (269)
T ss_pred HHHH
Confidence 5443
No 405
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=52.84 E-value=1.5e+02 Score=25.58 Aligned_cols=92 Identities=14% Similarity=0.216 Sum_probs=61.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhccC----------------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChH
Q 003918 522 VDLEESLGNLESTRAVYERILDLRIA----------------TPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVK 585 (786)
Q Consensus 522 ~~~~~~~g~~~~A~~~~~~al~~~p~----------------~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~ 585 (786)
.......|+.+....+.++.-.++++ +..++...+..+...|++..|+++.+.....++-|-..
T Consensus 9 i~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~ 88 (126)
T PF12921_consen 9 IYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPK 88 (126)
T ss_pred HHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCH
Confidence 33344567777777777666544311 24678888888999999999999999999987767778
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 003918 586 DIWVTYLSKFVKRYGKTKLERARELFENA 614 (786)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 614 (786)
.+|..++...... .....+.+...+.++
T Consensus 89 ~~W~~Ll~W~~v~-s~~~~~~~~~~~~~~ 116 (126)
T PF12921_consen 89 EFWRRLLEWAYVL-SSKREDRAARYFLKC 116 (126)
T ss_pred HHHHHHHHHHHHh-cCCcccccHHHHhhh
Confidence 8998877655433 222344444444444
No 406
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=50.83 E-value=55 Score=30.82 Aligned_cols=49 Identities=24% Similarity=0.260 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 003918 604 LERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVP 655 (786)
Q Consensus 604 ~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p 655 (786)
.+..++..++.+...|+ +.++.+++.++...|+.++|....+++....|
T Consensus 127 l~~~~~~a~~~l~~~P~---~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRPD---PNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 45566777777888885 67899999999999999999999999999999
No 407
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=48.02 E-value=1.1e+02 Score=30.24 Aligned_cols=65 Identities=15% Similarity=0.096 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCCh--hhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 003918 423 HTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTV--DHLASIWCEWAEMELRHKNFKGALELMRRA 487 (786)
Q Consensus 423 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 487 (786)
..+-..+|..|...|++++|.+.|+.+....-... .-+..+...+..+..+.|+.+..+.+.-++
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 45667889999999999999999999965433221 112345555566667778877776654443
No 408
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=47.80 E-value=52 Score=20.00 Aligned_cols=25 Identities=4% Similarity=-0.052 Sum_probs=11.1
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHH
Q 003918 552 IINYALLLEEHKYFEDAFRVYERGV 576 (786)
Q Consensus 552 ~~~~~~~~~~~g~~~~A~~~~~~al 576 (786)
|..+...+.+.|+++.|..+|+...
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~ 28 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMK 28 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3334444444444444444444443
No 409
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=46.33 E-value=3.2e+02 Score=27.34 Aligned_cols=109 Identities=17% Similarity=0.236 Sum_probs=74.0
Q ss_pred hhHHHHHHHHHHHHHhcCCCH----------HH----HHHHHHHHHcCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHH
Q 003918 82 PEYETLNNTFERALVTMHKMP----------RI----WIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRF 147 (786)
Q Consensus 82 ~~~~~A~~~~~~al~~~p~~~----------~~----w~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~w~~~~~~ 147 (786)
.++..|..+.+++++....+. ++ .+-=+....+.++..++....-+-.+ .|....+.+-.+-+-.
T Consensus 49 rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq-~pEklPpkIleLCILL 127 (309)
T PF07163_consen 49 RDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQ-VPEKLPPKILELCILL 127 (309)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhc-CcccCCHHHHHHHHHH
Confidence 789999999999998652211 11 11112333355666666655554444 4554457777888888
Q ss_pred HHhcCCChHHHHHHHHHHHccCCCCH-----HHHH-----HHHHhcCCHHHHHHHH
Q 003918 148 VEQEGIPIETSLRVYRRYLKYDPSHI-----EDFI-----EFLVKSKLWQEAAERL 193 (786)
Q Consensus 148 ~~~~~~~~~~A~~~~~~~l~~~p~~~-----~~~~-----~~~~~~g~~~~A~~~~ 193 (786)
+.+.+.+ .....+-..-++ +|+|. ..++ +.++-.|.+++|.+..
T Consensus 128 ysKv~Ep-~amlev~~~WL~-~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 128 YSKVQEP-AAMLEVASAWLQ-DPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhcCH-HHHHHHHHHHHh-CcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 8899999 888888888887 88885 2222 5566789999999976
No 410
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=46.23 E-value=87 Score=33.13 Aligned_cols=49 Identities=8% Similarity=-0.029 Sum_probs=42.9
Q ss_pred CchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 003918 80 THPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRA 128 (786)
Q Consensus 80 ~~~~~~~A~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~~~A~~~~~~a 128 (786)
.....-+|..+++.++...|.|..+-+.+++++...|..+.|...|...
T Consensus 195 ~~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 195 DSEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred CHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 3466778899999999999999999999999999999999999998753
No 411
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=46.06 E-value=79 Score=24.59 Aligned_cols=32 Identities=9% Similarity=0.059 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003918 82 PEYETLNNTFERALVTMHKMPRIWIMYLETLT 113 (786)
Q Consensus 82 ~~~~~A~~~~~~al~~~p~~~~~w~~~~~~~~ 113 (786)
++.++|+..+.++|+..+++++-|..++-...
T Consensus 20 ~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~q 51 (80)
T PF10579_consen 20 NETQQALQKWRKALEKITDREDRFRVLGYLIQ 51 (80)
T ss_pred chHHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Confidence 56677888888888888887777766555433
No 412
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.51 E-value=5.6e+02 Score=29.94 Aligned_cols=59 Identities=15% Similarity=0.282 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhC
Q 003918 550 QIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETA 618 (786)
Q Consensus 550 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 618 (786)
.+...||..++..|++++|...|-+++... +|. .+-..|++ ...+.+-..+++...+..
T Consensus 369 ~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~s--~Vi~kfLd-------aq~IknLt~YLe~L~~~g 427 (933)
T KOG2114|consen 369 EIHRKYGDYLYGKGDFDEATDQYIETIGFL-EPS--EVIKKFLD-------AQRIKNLTSYLEALHKKG 427 (933)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHcccC-ChH--HHHHHhcC-------HHHHHHHHHHHHHHHHcc
Confidence 466778899999999999999999998864 342 22222222 123445555666655553
No 413
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.73 E-value=1.4e+02 Score=31.21 Aligned_cols=62 Identities=15% Similarity=0.131 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCH---HHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 003918 516 RLWTFYVDLEESLGNLESTRAVYERILDLRIATP---QIIINYALLLEEHKYFEDAFRVYERGVK 577 (786)
Q Consensus 516 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~g~~~~A~~~~~~al~ 577 (786)
.+...+++.|...|+++.|.+.|-++...+-... ..|.++..+-...|+|........++..
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 5666777777777888888888877666544332 3455555555566666655555555544
No 414
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=44.70 E-value=80 Score=32.37 Aligned_cols=56 Identities=14% Similarity=0.370 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChh
Q 003918 400 TKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVD 458 (786)
Q Consensus 400 ~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~ 458 (786)
+++...+...++.++. ....+..|+.+|.++...|.++..+.+|++|+.....-.+
T Consensus 120 eei~~~L~~li~~IP~---A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPie 175 (353)
T PF15297_consen 120 EEILATLSDLIKNIPD---AKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIE 175 (353)
T ss_pred HHHHHHHHHHHhcCch---HHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHH
Confidence 5677778877765543 2356789999999999999999999999999987665443
No 415
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=44.62 E-value=3.1e+02 Score=26.80 Aligned_cols=30 Identities=17% Similarity=0.207 Sum_probs=24.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhccCC
Q 003918 426 WVAFAKLYETYKDIANARVIFDKAVQVNYK 455 (786)
Q Consensus 426 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 455 (786)
...+|++..+.|++++....+++++..+|.
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~e 33 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPE 33 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS-
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCC
Confidence 356788888889999999999999887664
No 416
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=44.00 E-value=65 Score=21.47 Aligned_cols=32 Identities=25% Similarity=0.254 Sum_probs=21.8
Q ss_pred HHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHH
Q 003918 610 LFENAVETAPADAVKPLYLQYAKLEEDYGLAKRA 643 (786)
Q Consensus 610 ~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A 643 (786)
.|.++|-..|+ +-..+.-||..+...|+..+|
T Consensus 4 all~AI~~~P~--ddt~RLvYADWL~e~gdp~ra 35 (42)
T TIGR02996 4 ALLRAILAHPD--DDTPRLVYADWLDEHGDPARA 35 (42)
T ss_pred HHHHHHHhCCC--CcchHHHHHHHHHHcCCHHHH
Confidence 45666677777 446677777777777777554
No 417
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=43.57 E-value=62 Score=32.46 Aligned_cols=62 Identities=23% Similarity=0.166 Sum_probs=41.9
Q ss_pred HHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHH
Q 003918 480 ALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLL 559 (786)
Q Consensus 480 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 559 (786)
|+.+|.+|+.+.| .+...|..+|.+....|+.-.|+-.|-|++-.....+.+..++..+.
T Consensus 1 A~~~Y~~A~~l~P--------------------~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf 60 (278)
T PF10373_consen 1 AERYYRKAIRLLP--------------------SNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLF 60 (278)
T ss_dssp HHHHHHHHHHH-T--------------------TBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHH
T ss_pred CHHHHHHHHHhCC--------------------CCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 5667777777777 66777777777777777777777777777766555566667776666
Q ss_pred HH
Q 003918 560 EE 561 (786)
Q Consensus 560 ~~ 561 (786)
.+
T Consensus 61 ~~ 62 (278)
T PF10373_consen 61 EK 62 (278)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 418
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=43.23 E-value=43 Score=25.79 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=9.8
Q ss_pred cCChHHHHHHHHHHHcc
Q 003918 710 LGEIDRARGIYVFASQF 726 (786)
Q Consensus 710 ~g~~~~A~~~~~~al~~ 726 (786)
.|++++|..+|..|++.
T Consensus 19 ~gny~eA~~lY~~ale~ 35 (75)
T cd02680 19 KGNAEEAIELYTEAVEL 35 (75)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 35566666666666554
No 419
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=43.06 E-value=4.6e+02 Score=28.28 Aligned_cols=41 Identities=15% Similarity=0.018 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHH
Q 003918 425 LWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEM 470 (786)
Q Consensus 425 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~ 470 (786)
..-.+|++....++++.|..+|+.+.+-..++ ..|..+|..
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~D-----kaw~~~A~~ 250 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKND-----KAWKYLAGA 250 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhc-----hhHHHHHhH
Confidence 33557788888888888888888877644433 555555443
No 420
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=42.47 E-value=88 Score=30.91 Aligned_cols=104 Identities=13% Similarity=0.149 Sum_probs=57.8
Q ss_pred CCCCCCCcchHhHHHHhhCCCChHhHHHHHHHHH---cCChhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccCCCCCc
Q 003918 5 KELYPSEDDLLYEEELLRNPFSLKLWWRYLVAKR---EAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITH 81 (786)
Q Consensus 5 ~~~~~~~~~~~~~~~l~~~p~~~~~w~~~~~~~~---~~~~~~~~~~~~~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~ 81 (786)
|+.++++--.-.+.++.-||.++.-|.-.---.. ....++=..+-++.|..+|.+...|.-.--++.. . ....+.
T Consensus 86 k~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~-i-e~~~N~ 163 (328)
T COG5536 86 KEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRT-I-EDLFNF 163 (328)
T ss_pred chhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeec-c-hhhccc
Confidence 4556666555567777788888888876633222 2334444455578888888888888422111100 0 000111
Q ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 003918 82 PEYETLNNTFERALVTMHKMPRIWIMYLE 110 (786)
Q Consensus 82 ~~~~~A~~~~~~al~~~p~~~~~w~~~~~ 110 (786)
..+..-...=..++..++.|+++|.....
T Consensus 164 S~~k~e~eytt~~I~tdi~N~SaW~~r~~ 192 (328)
T COG5536 164 SDLKHELEYTTSLIETDIYNNSAWHHRYI 192 (328)
T ss_pred hhHHHHHHhHHHHHhhCCCChHHHHHHHH
Confidence 33333344444555667888888866533
No 421
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=42.46 E-value=1e+02 Score=30.79 Aligned_cols=46 Identities=15% Similarity=0.060 Sum_probs=34.2
Q ss_pred HHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCC
Q 003918 442 ARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEP 491 (786)
Q Consensus 442 A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 491 (786)
|+..|.+|..+.|++. ..|.++|.+....|+.=.|+-.|-|++...
T Consensus 1 A~~~Y~~A~~l~P~~G----~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~ 46 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNG----NPYNQLAVLASYQGDDLDAVYYYIRSLAVR 46 (278)
T ss_dssp HHHHHHHHHHH-TTBS----HHHHHHHHHHHHTT-HHHHHHHHHHHHSSS
T ss_pred CHHHHHHHHHhCCCCC----CcccchhhhhccccchHHHHHHHHHHHhcC
Confidence 5677888888888876 788888888888888888887777777543
No 422
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=42.33 E-value=4.4e+02 Score=27.81 Aligned_cols=40 Identities=20% Similarity=0.040 Sum_probs=20.7
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHH
Q 003918 534 TRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYE 573 (786)
Q Consensus 534 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~ 573 (786)
|..+++.++...|.++.+-+.+..+|...|-.+.|...|.
T Consensus 202 Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~ 241 (365)
T PF09797_consen 202 AIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYE 241 (365)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3444455555555555555555555555555555555553
No 423
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=40.80 E-value=4.2e+02 Score=27.23 Aligned_cols=95 Identities=7% Similarity=0.028 Sum_probs=58.1
Q ss_pred CCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHh---ccCCChh-hHHHHHHHHHHHHH
Q 003918 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQ---VNYKTVD-HLASIWCEWAEMEL 472 (786)
Q Consensus 397 ~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~---~~p~~~~-~~~~~~~~~a~~~~ 472 (786)
++.++|++..++.+..+...+.+..-.......|.++...|+.+++++..+..-+ .-+.-+. -...+|..-..++.
T Consensus 89 ~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqYyk 168 (380)
T KOG2908|consen 89 SDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQYYK 168 (380)
T ss_pred ccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHHHHH
Confidence 5778899998888765443222222345557778888899999999998877654 1111111 11244444566677
Q ss_pred hccCHHHHHHHHHHHhcCC
Q 003918 473 RHKNFKGALELMRRATAEP 491 (786)
Q Consensus 473 ~~g~~~~A~~~~~~al~~~ 491 (786)
..|++....+..-+-+.+.
T Consensus 169 ~~~d~a~yYr~~L~YL~~~ 187 (380)
T KOG2908|consen 169 KIGDFASYYRHALLYLGCS 187 (380)
T ss_pred HHHhHHHHHHHHHHHhccc
Confidence 7788876655554444443
No 424
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=39.83 E-value=41 Score=25.89 Aligned_cols=17 Identities=29% Similarity=0.497 Sum_probs=10.4
Q ss_pred cCCHHHHHHHHHHHHhc
Q 003918 637 YGLAKRAMKVYDQATKA 653 (786)
Q Consensus 637 ~g~~~~A~~~~~~~l~~ 653 (786)
.|++++|+.+|..+++.
T Consensus 19 ~gny~eA~~lY~~ale~ 35 (75)
T cd02680 19 KGNAEEAIELYTEAVEL 35 (75)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 36666666666666654
No 425
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=38.89 E-value=3.2e+02 Score=31.20 Aligned_cols=16 Identities=25% Similarity=0.416 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHhcCC
Q 003918 640 AKRAMKVYDQATKAVP 655 (786)
Q Consensus 640 ~~~A~~~~~~~l~~~p 655 (786)
.+.|.+-|+++.+..|
T Consensus 303 ~~~a~~WyrkaFeveP 318 (1226)
T KOG4279|consen 303 LNHAIEWYRKAFEVEP 318 (1226)
T ss_pred HHHHHHHHHHHhccCc
Confidence 4444555555554444
No 426
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=38.00 E-value=2.7e+02 Score=24.22 Aligned_cols=100 Identities=18% Similarity=0.182 Sum_probs=54.3
Q ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHhcCCChHHHHHH
Q 003918 82 PEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRV 161 (786)
Q Consensus 82 ~~~~~A~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~w~~~~~~~~~~~~~~~~A~~~ 161 (786)
+.+......++.++...+.++.+...++..+.+.+ -.+....+.. .... .+ ....+..+.+.+-+ +++.-+
T Consensus 21 ~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~----yd-~~~~~~~c~~~~l~-~~~~~l 91 (140)
T smart00299 21 NLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN--KSNH----YD-IEKVGKLCEKAKLY-EEAVEL 91 (140)
T ss_pred CcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh--cccc----CC-HHHHHHHHHHcCcH-HHHHHH
Confidence 45677778888888877777778777777776542 2233333332 1111 11 23344555555555 666666
Q ss_pred HHHHHccCCCCHHHHHHHHHhc-CCHHHHHHHHHH
Q 003918 162 YRRYLKYDPSHIEDFIEFLVKS-KLWQEAAERLAS 195 (786)
Q Consensus 162 ~~~~l~~~p~~~~~~~~~~~~~-g~~~~A~~~~~~ 195 (786)
|.+. .....-+..++.. ++.+.|++++.+
T Consensus 92 ~~k~-----~~~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 92 YKKD-----GNFKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred HHhh-----cCHHHHHHHHHHcccCHHHHHHHHHh
Confidence 6543 1122223334433 667777776554
No 427
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=37.16 E-value=1.8e+02 Score=29.99 Aligned_cols=66 Identities=18% Similarity=0.194 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHhcCCCh-hHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCCCHHHHHHHHHHHH
Q 003918 677 PKTREIYEQAIESGLPDK-DVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEV 744 (786)
Q Consensus 677 ~~A~~~~~~al~~~~p~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~ 744 (786)
++...++...+.. .|+- ....+|..+|.++...|.++..+.+|+.|+.. ....-.++-..++++..
T Consensus 120 eei~~~L~~li~~-IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~a-gAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKN-IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILA-GAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc-CCChHHHHHHHHHHHHH
Confidence 3556666666666 6642 14568888888888888888888888888875 23212344444444433
No 428
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=36.72 E-value=6.5e+02 Score=28.21 Aligned_cols=86 Identities=21% Similarity=0.271 Sum_probs=42.2
Q ss_pred HHHHHHcC--ChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHH---HhhcCCCChHHHHHHHHHHHH
Q 003918 522 VDLEESLG--NLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERG---VKIFKYPHVKDIWVTYLSKFV 596 (786)
Q Consensus 522 ~~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a---l~~~~~p~~~~~~~~~~~~~~ 596 (786)
+.+....+ ....-..+|+.+++.+|........+..++.. ...+.++.+-+ +.. .| ...+|..+...+.
T Consensus 349 ~~lle~~d~~~~~~l~~~~e~~~~~~P~~~~~le~l~~~~~~---~~~~~~Lle~i~~~l~~--~~-s~~iwle~~~~~l 422 (547)
T PF14929_consen 349 AHLLEYFDQNNSSVLSSCLEDCLKKDPTMSYSLERLILLHQK---DYSAEQLLEMIALHLDL--VP-SHPIWLEFVSCFL 422 (547)
T ss_pred HHHHHHhCcccHHHHHHHHHHHhcCCCcHHHHHHHHHhhhhh---HHHHHHHHHHHHHHhhc--CC-CchHHHHHHHHHH
Confidence 44444444 45566678888888777665555444444433 23333333311 222 22 3456777665544
Q ss_pred HHhCCCChHHHHHHHHHHH
Q 003918 597 KRYGKTKLERARELFENAV 615 (786)
Q Consensus 597 ~~~~~~~~~~A~~~~~~al 615 (786)
.. .++++.-.+-.+.++
T Consensus 423 ~~--~~~~~~~~e~~~~~l 439 (547)
T PF14929_consen 423 KN--PSRFEDKEEDHKSAL 439 (547)
T ss_pred hc--cccccccHHHHHHHH
Confidence 32 133433344444443
No 429
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=35.87 E-value=3.4 Score=36.82 Aligned_cols=23 Identities=13% Similarity=0.296 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHhccCHHHHHHHH
Q 003918 462 SIWCEWAEMELRHKNFKGALELM 484 (786)
Q Consensus 462 ~~~~~~a~~~~~~g~~~~A~~~~ 484 (786)
.+...++.++.+.+..+...+.+
T Consensus 43 ~~~~~L~~ly~~~~~~~~l~~~L 65 (143)
T PF00637_consen 43 DLHTLLLELYIKYDPYEKLLEFL 65 (143)
T ss_dssp HHHHHHHHHHHCTTTCCHHHHTT
T ss_pred HHHHHHHHHHHhcCCchHHHHHc
Confidence 44444444444444334443333
No 430
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=34.92 E-value=4.8e+02 Score=26.12 Aligned_cols=203 Identities=15% Similarity=0.121 Sum_probs=117.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhcc--------CCHHHHHHHHHHHHHcccHHHHHHH---HHHHHhhcCCCChHHHH
Q 003918 520 FYVDLEESLGNLESTRAVYERILDLRI--------ATPQIIINYALLLEEHKYFEDAFRV---YERGVKIFKYPHVKDIW 588 (786)
Q Consensus 520 ~~~~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~~~~~~~~~g~~~~A~~~---~~~al~~~~~p~~~~~~ 588 (786)
..++-..+.+++++|+..|.+.+...- ........++.+|...|++..-.+. .+.+...+..|....+.
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kii 87 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKII 87 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHH
Confidence 445555677899999999999987521 1234678899999999976544333 33344434345554444
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CC---c
Q 003918 589 VTYLSKFVKRYGKTKLERARELFENAVETAPADA----VKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVP---NH---E 658 (786)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p---~~---~ 658 (786)
..++..+- .....++.-+.+...+++-...+. ...+-..++.++++.|.+..|+....-.+.... +. .
T Consensus 88 rtLiekf~--~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li 165 (421)
T COG5159 88 RTLIEKFP--YSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLI 165 (421)
T ss_pred HHHHHhcC--CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCcccee
Confidence 43333222 123456677777777776432211 123556678889999999999988876653322 21 1
Q ss_pred hhhHHHHHHHHHHHhcChhHHHHHHHHHHHh----cCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHcc
Q 003918 659 KLGMYEIYIARAAEIFGVPKTREIYEQAIES----GLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQF 726 (786)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 726 (786)
.+.++..-+.+.. .+..+++.-+..|-.. .+|.......=+.-|.....-.++..|..+|-.|.+-
T Consensus 166 ~vhllESKvyh~i--rnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Eg 235 (421)
T COG5159 166 TVHLLESKVYHEI--RNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEG 235 (421)
T ss_pred ehhhhhHHHHHHH--HhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhc
Confidence 2233433334333 3555555555444322 2454222222222244555567888999999888874
No 431
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=34.19 E-value=4.3e+02 Score=32.51 Aligned_cols=124 Identities=11% Similarity=0.057 Sum_probs=72.8
Q ss_pred HcCChHHHHH------HHH-HHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhc------CCCChHHHHHHHHH
Q 003918 527 SLGNLESTRA------VYE-RILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIF------KYPHVKDIWVTYLS 593 (786)
Q Consensus 527 ~~g~~~~A~~------~~~-~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~------~~p~~~~~~~~~~~ 593 (786)
..|.+..|.. .+. ......|..+..+..++.++.+.|+.++|+..-.++.-+. ..|+....+...
T Consensus 944 ~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nl-- 1021 (1236)
T KOG1839|consen 944 LEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNL-- 1021 (1236)
T ss_pred cccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHH--
Confidence 3455555555 555 3333467777888999999999999999988766655431 113333333332
Q ss_pred HHHHHhCCCChHHHHHHHHHHHhh-----CCccC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 003918 594 KFVKRYGKTKLERARELFENAVET-----APADA-VKPLYLQYAKLEEDYGLAKRAMKVYDQATKA 653 (786)
Q Consensus 594 ~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 653 (786)
....++.++...|...+.++... .|+.+ ...+..++..++...+.++.|.++.+.+++.
T Consensus 1022 -al~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~ 1086 (1236)
T KOG1839|consen 1022 -ALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAK 1086 (1236)
T ss_pred -HHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 12122445666677777766664 22211 2334455666666667777788777777764
No 432
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=33.92 E-value=3.3e+02 Score=25.31 Aligned_cols=27 Identities=11% Similarity=0.249 Sum_probs=16.0
Q ss_pred HHHHHcCChHHHHHHHHHHHhhccCCHH
Q 003918 523 DLEESLGNLESTRAVYERILDLRIATPQ 550 (786)
Q Consensus 523 ~~~~~~g~~~~A~~~~~~al~~~p~~~~ 550 (786)
-++.+.|.+++|.+++++..+ +|++..
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~-d~~~~~ 145 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS-DPESQK 145 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc-CCCchh
Confidence 345566666666666666666 555443
No 433
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=33.46 E-value=4.3e+02 Score=28.03 Aligned_cols=30 Identities=20% Similarity=0.064 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHhcCCc
Q 003918 463 IWCEWAEMELRHKNFKGALELMRRATAEPS 492 (786)
Q Consensus 463 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~ 492 (786)
+-..+..+|++.++++-|+..-.+.|..+|
T Consensus 230 Ietklv~CYL~~rkpdlALnh~hrsI~lnP 259 (569)
T PF15015_consen 230 IETKLVTCYLRMRKPDLALNHSHRSINLNP 259 (569)
T ss_pred HHHHHHHhhhhcCCCchHHHHHhhhhhcCc
Confidence 345567788999999999999999998888
No 434
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=33.39 E-value=6.1e+02 Score=26.88 Aligned_cols=112 Identities=12% Similarity=0.083 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhcc--CCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhh
Q 003918 423 HTLWVAFAKLYETYKDIANARVIFDKAVQVN--YKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVA 500 (786)
Q Consensus 423 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 500 (786)
..+|+-+...+...|+...-+..+...+... -++.+.-+.+.+.+...++.++.+++|.++..+..--.. .+.
T Consensus 169 ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~-~sn---- 243 (493)
T KOG2581|consen 169 AKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEA-ASN---- 243 (493)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccc-ccc----
Confidence 3566667777778888888777777665522 112233346677778888889999999887776542111 000
Q ss_pred ccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHH
Q 003918 501 ADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQ 550 (786)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 550 (786)
..-.+..+..|.+-.-++++..|.+.|-+|+...|++..
T Consensus 244 -----------ne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~a 282 (493)
T KOG2581|consen 244 -----------NEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAA 282 (493)
T ss_pred -----------HHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhh
Confidence 012344444566667789999999999999999997543
No 435
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=33.25 E-value=4.7e+02 Score=25.56 Aligned_cols=29 Identities=10% Similarity=0.177 Sum_probs=24.9
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHhcCCc
Q 003918 464 WCEWAEMELRHKNFKGALELMRRATAEPS 492 (786)
Q Consensus 464 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~ 492 (786)
...++.+..+.|+++++...+++++...+
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~ 32 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNP 32 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCC
Confidence 35678888899999999999999998766
No 436
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=32.54 E-value=2.7e+02 Score=31.21 Aligned_cols=80 Identities=15% Similarity=0.145 Sum_probs=59.7
Q ss_pred HhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHH
Q 003918 472 LRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQI 551 (786)
Q Consensus 472 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 551 (786)
.+....+.++...+.-+.... .+......-+.+....+..++|-.+|++.+..+|+ ..
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 76 (578)
T PRK15490 19 KQEKKLAQAVALIDSELPTEA--------------------LTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EA 76 (578)
T ss_pred HHHhhHHHHHHHHHHhCCccc--------------------hhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--ch
Confidence 445567777777776654444 23333444466666778889999999999998887 78
Q ss_pred HHHHHHHHHHcccHHHHHHHHH
Q 003918 552 IINYALLLEEHKYFEDAFRVYE 573 (786)
Q Consensus 552 ~~~~~~~~~~~g~~~~A~~~~~ 573 (786)
++.++.-+.+.|-...|..++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 77 RYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred HHHHHHHHHhhhhhhHHHHHHH
Confidence 8899999999998888888887
No 437
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=31.94 E-value=1.2e+02 Score=28.41 Aligned_cols=33 Identities=21% Similarity=0.172 Sum_probs=20.0
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcc
Q 003918 514 SLRLWTFYVDLEESLGNLESTRAVYERILDLRI 546 (786)
Q Consensus 514 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p 546 (786)
++.++..++.++...|+.++|....+++....|
T Consensus 143 ~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 143 DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 455555566666666666666666666666555
No 438
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=31.81 E-value=1e+02 Score=23.12 Aligned_cols=16 Identities=25% Similarity=0.322 Sum_probs=7.9
Q ss_pred cCChHHHHHHHHHHHc
Q 003918 710 LGEIDRARGIYVFASQ 725 (786)
Q Consensus 710 ~g~~~~A~~~~~~al~ 725 (786)
.|++++|...|..|+.
T Consensus 18 ~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 18 AGNYEEALELYKEAIE 33 (69)
T ss_dssp TTSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4455555555544444
No 439
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=31.73 E-value=5.9e+02 Score=26.23 Aligned_cols=175 Identities=17% Similarity=0.170 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHH
Q 003918 532 ESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELF 611 (786)
Q Consensus 532 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 611 (786)
++|+.+=.-.....|..|++.-..+.++.+......=...=-..+-+ ...+...|..- -++++....
T Consensus 213 ~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL--~dQDr~lW~r~-----------lI~eg~all 279 (415)
T COG4941 213 DEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLL--EDQDRSLWDRA-----------LIDEGLALL 279 (415)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeec--cccchhhhhHH-----------HHHHHHHHH
Confidence 45555556666778888887666655544322110000000000000 12344556541 155566666
Q ss_pred HHHHhh-CCccCcHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHH
Q 003918 612 ENAVET-APADAVKPLYLQYAKLEED-----YGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQ 685 (786)
Q Consensus 612 ~~al~~-~p~~~~~~~~~~~a~~~~~-----~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 685 (786)
.+++.. .|+. ..+.-.++.++-. .-+...-..+|.-..+..| +|.+.+....... ...+...+....+.
T Consensus 280 ~rA~~~~~pGP--YqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~ap-SPvV~LNRAVAla--~~~Gp~agLa~ve~ 354 (415)
T COG4941 280 DRALASRRPGP--YQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAP-SPVVTLNRAVALA--MREGPAAGLAMVEA 354 (415)
T ss_pred HHHHHcCCCCh--HHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCC-CCeEeehHHHHHH--HhhhHHhHHHHHHH
Confidence 666665 2332 3344444444433 2244555556666555555 4455555444432 33455666666665
Q ss_pred HHHhcCCC-hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHcc
Q 003918 686 AIESGLPD-KDVKAMCLKYAELEKSLGEIDRARGIYVFASQF 726 (786)
Q Consensus 686 al~~~~p~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 726 (786)
.... |. +..-..+-.-+.++.+.|..++|++.|++|+..
T Consensus 355 L~~~--~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~L 394 (415)
T COG4941 355 LLAR--PRLDGYHLYHAARADLLARLGRVEEARAAYDRAIAL 394 (415)
T ss_pred hhcc--cccccccccHHHHHHHHHHhCChHHHHHHHHHHHHh
Confidence 5543 21 112234444577888888888888888888886
No 440
>PF08771 Rapamycin_bind: Rapamycin binding domain; InterPro: IPR009076 Rapamycin and FK506 are potent immunosuppressive agents that bind to the FK506-binding protein (FKBP12), inhibiting its peptidyl-prolyl isomerase activity. The rapamycin-FKBP12 complex can then bind to and inhibit the FKBP12-rapamycin-associated protein (FRAP) in humans and RAFT1 in rats, causing cell-cycle arrest []. The FK506-FKBP12 complex cannot bind FRAP, but can bind to and inhibit calcineurin. Rapamycin is able to bind to two proteins, FKBP12 and FRAP, by simultaneously occupying two hydrophobic binding pockets, thereby linking these two proteins together to form a dimer []. The structure of the FKBP12-rapamycin-binding domain of FRAP consists of a core bundle of four helices arranged up-and-down in a left-handed twist. FRAP has been shown to interact in vitro with CLIP-170, a protein involved in microtubule organisation and function []. FRAP is thought to act as a kinase to phosphorylate CLIP-170, thereby regulating its binding to microtubules. FRAP is also thought to cooperate with p85/p110 phosphatidylinositol 3-kinase (PI3K) to induce the activation of the serine/threonine kinase p70 S6 kinase (p70S6K), which in turn phosphorylates the 40S ribosomal protein S6, thereby altering the translation of ribosomal proteins and translation elongation factors [].; GO: 0016772 transferase activity, transferring phosphorus-containing groups; PDB: 2NPU_A 2RSE_B 4FAP_B 1AUE_A 2GAQ_A 1FAP_B 2FAP_B 3FAP_B 1NSG_B.
Probab=31.55 E-value=1.1e+02 Score=25.13 Aligned_cols=88 Identities=17% Similarity=0.169 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhCCCCcchhh
Q 003918 61 KLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRI 140 (786)
Q Consensus 61 ~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 140 (786)
+.|..-+.-.... +...++++....+++...+....-|+--....=...-..++..|...+++-....-......+
T Consensus 11 E~W~~~Le~As~~----y~~~~n~~~m~~~L~pLh~~l~k~PeT~~E~~F~~~fg~~L~~A~~~~~~y~~t~~~~~l~~a 86 (100)
T PF08771_consen 11 ELWYEALEEASRL----YFGENNVEKMFKILEPLHEMLEKGPETLREVSFAQAFGRDLQEAREWLKRYERTGDETDLNQA 86 (100)
T ss_dssp HHHHHHHHHHHHH----HHTTT-HHHHHHHHHHHHHHHHHS-SSHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHH----HHhhcCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhCCHhhHHHH
Confidence 4555555543321 112356666666666665544222221111111111234677888888887665443335688
Q ss_pred HHHHHHHHHhcC
Q 003918 141 WEIYLRFVEQEG 152 (786)
Q Consensus 141 w~~~~~~~~~~~ 152 (786)
|..|-.++.+..
T Consensus 87 W~~y~~v~~~i~ 98 (100)
T PF08771_consen 87 WDIYYQVYRRIK 98 (100)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 888887776543
No 441
>TIGR01987 HI0074 nucleotidyltransferase substrate binding protein, HI0074 family. The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins. It forms a complex with HI0073, encoded by the adjacent gene and containing a nucleotidyltransferase nucleotide binding domain (pfam01909).
Probab=31.09 E-value=2.8e+02 Score=23.89 Aligned_cols=23 Identities=13% Similarity=0.322 Sum_probs=11.1
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHH
Q 003918 569 FRVYERGVKIFKYPHVKDIWVTYL 592 (786)
Q Consensus 569 ~~~~~~al~~~~~p~~~~~~~~~~ 592 (786)
..+++.|.+. +--.+...|..++
T Consensus 63 r~~ir~A~~~-glI~d~~~W~~ml 85 (123)
T TIGR01987 63 KDVLKEAFRA-GLIGDESLWIAML 85 (123)
T ss_pred HHHHHHHHHc-CCcCCHHHHHHHH
Confidence 4445555443 2234555666543
No 442
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=30.94 E-value=8.6e+02 Score=29.50 Aligned_cols=74 Identities=11% Similarity=0.202 Sum_probs=53.9
Q ss_pred hcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHcc-CCCCCCHHHHHHHHHHHHHcCCH
Q 003918 673 IFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQF-ADPRSDTEFWNRWHEFEVNHGNE 749 (786)
Q Consensus 673 ~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-~~p~~~~~~~~~~~~~~~~~G~~ 749 (786)
...+.+++.+|..+-..|.. ......|-.|+..+.+.+.+.+|.++|..+++. +.|- ..+-..+..|..+.|..
T Consensus 91 ~e~~~d~~d~f~~m~~kgIg-~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP~--~rL~~~~~~F~~r~~r~ 165 (974)
T KOG1166|consen 91 REELQDAEDFFSYLENKGIG-TTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEPL--ERLLRQYSNFQQRLMRQ 165 (974)
T ss_pred HHHHhhHHHHHHHHHhcccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH--HHHHHHHHHHHHHHhhh
Confidence 34678899999988776332 224668888899999999999999999999986 2332 45666666666666554
No 443
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=30.75 E-value=1.3e+02 Score=23.16 Aligned_cols=16 Identities=31% Similarity=0.476 Sum_probs=7.1
Q ss_pred HHHHHHHHHhcCCCCc
Q 003918 643 AMKVYDQATKAVPNHE 658 (786)
Q Consensus 643 A~~~~~~~l~~~p~~~ 658 (786)
|++.+.++++..|+++
T Consensus 32 aIe~L~q~~~~~pD~~ 47 (75)
T cd02682 32 AIEVLSQIVKNYPDSP 47 (75)
T ss_pred HHHHHHHHHHhCCChH
Confidence 3333444444555443
No 444
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.31 E-value=6.6e+02 Score=29.58 Aligned_cols=129 Identities=17% Similarity=0.172 Sum_probs=83.3
Q ss_pred HhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHH
Q 003918 472 LRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQI 551 (786)
Q Consensus 472 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 551 (786)
+.-|+.+.|.+.-.+. +++..|..++.....+|+.+-|..+|++.-.
T Consensus 654 Le~gnle~ale~akkl-------------------------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn-------- 700 (1202)
T KOG0292|consen 654 LECGNLEVALEAAKKL-------------------------DDKDVWERLGEEALRQGNHQIAEMCYQRTKN-------- 700 (1202)
T ss_pred hhcCCHHHHHHHHHhc-------------------------CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh--------
Confidence 4567787777655543 5678999999998999999999999987754
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHH
Q 003918 552 IINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYA 631 (786)
Q Consensus 552 ~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a 631 (786)
|..+..+|.-.|+.++-.++-+.|-.. ++....+ ...++ .|+.++-+.+++.+=.. ...|..-+
T Consensus 701 fekLsfLYliTgn~eKL~Km~~iae~r----~D~~~~~--qnalY----l~dv~ervkIl~n~g~~------~laylta~ 764 (1202)
T KOG0292|consen 701 FEKLSFLYLITGNLEKLSKMMKIAEIR----NDATGQF--QNALY----LGDVKERVKILENGGQL------PLAYLTAA 764 (1202)
T ss_pred hhheeEEEEEeCCHHHHHHHHHHHHhh----hhhHHHH--HHHHH----hccHHHHHHHHHhcCcc------cHHHHHHh
Confidence 555666777788888776666655442 2222222 22232 36788877777755221 12333221
Q ss_pred HHHHHcCCHHHHHHHHHHHHhc
Q 003918 632 KLEEDYGLAKRAMKVYDQATKA 653 (786)
Q Consensus 632 ~~~~~~g~~~~A~~~~~~~l~~ 653 (786)
.+|.-++|.++.+.+-..
T Consensus 765 ----~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 765 ----AHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred ----hcCcHHHHHHHHHhhccc
Confidence 268778888888776653
No 445
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=30.02 E-value=1.3e+02 Score=22.50 Aligned_cols=19 Identities=21% Similarity=0.606 Sum_probs=10.2
Q ss_pred HHcccHHHHHHHHHHHHhh
Q 003918 560 EEHKYFEDAFRVYERGVKI 578 (786)
Q Consensus 560 ~~~g~~~~A~~~~~~al~~ 578 (786)
...|++++|+..|.+++..
T Consensus 16 D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 16 DEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHTTSHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 3355555555555555553
No 446
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=29.99 E-value=3.8e+02 Score=23.48 Aligned_cols=138 Identities=13% Similarity=0.094 Sum_probs=71.6
Q ss_pred HHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCc---hHHhhhhhccCChh
Q 003918 430 AKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPS---VEVRRRVAADGNEP 506 (786)
Q Consensus 430 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~~~~~~~ 506 (786)
|.-..-.|..++..++..+.....+-+. .-|.- .-....-+.+-..++++..=+.+. ..-.+++= .
T Consensus 9 AK~~ildG~V~qGveii~k~v~Ssni~E----~NWvI--CNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi-----~ 77 (161)
T PF09205_consen 9 AKERILDGDVKQGVEIIEKTVNSSNIKE----YNWVI--CNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVI-----E 77 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHS-HHH----HTHHH--HHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHH-----H
T ss_pred HHHHHHhchHHHHHHHHHHHcCcCCccc----cceee--eecchhhchhHHHHHHHHHhhhcCchhhcchHHHH-----H
Confidence 3344556888888888888886555332 22211 111223344444555555443332 11011100 0
Q ss_pred HHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 003918 507 VQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKI 578 (786)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 578 (786)
.-..........-...+....+|.-++-.+++....+....+|.++..++..|.+.|+..++-+++.+|.+.
T Consensus 78 C~~~~n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 78 CYAKRNKLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHTT---HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHhcchHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 000000112222223345567888888888888888666678999999999999999999999999998874
No 447
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=29.78 E-value=5.5e+02 Score=25.26 Aligned_cols=50 Identities=18% Similarity=0.212 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHhh-----CCccC-cHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhc
Q 003918 604 LERARELFENAVET-----APADA-VKPLYLQYAKLEED-YGLAKRAMKVYDQATKA 653 (786)
Q Consensus 604 ~~~A~~~~~~al~~-----~p~~~-~~~~~~~~a~~~~~-~g~~~~A~~~~~~~l~~ 653 (786)
.+.|.+.|+.|++. .|.++ ...+.++++.|++. .++.++|..+.+++++.
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~ 200 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 200 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45778888887764 23321 23456667777666 68888888777776653
No 448
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=29.70 E-value=1.7e+02 Score=32.18 Aligned_cols=65 Identities=12% Similarity=0.230 Sum_probs=41.7
Q ss_pred hhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHc--CChHHHHHHHHHHHc
Q 003918 659 KLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSL--GEIDRARGIYVFASQ 725 (786)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~--g~~~~A~~~~~~al~ 725 (786)
.+..|.+|.....+.+++..||+-|+++++. |....+++...+.+.-..- .++...+++|+...+
T Consensus 586 ~f~aW~AWGlA~Lk~e~~aaAR~KFkqafkl--kgedipdvi~diin~ieGgpp~dVq~Vrem~dhlak 652 (1141)
T KOG1811|consen 586 TFGAWHAWGLACLKAENLAAAREKFKQAFKL--KGEDIPDVIFDIINLIEGGPPRDVQDVREMLDHLAK 652 (1141)
T ss_pred cccHHHHHHHHHHHhhhHHHHHHHHHHHhCC--CCCccchHHHHHHHhhcCCCcchHHHHHHHHHHhcc
Confidence 4456777777777788888888888888765 2222455666655543332 456667777776655
No 449
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=28.99 E-value=5e+02 Score=24.55 Aligned_cols=66 Identities=17% Similarity=0.162 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCc
Q 003918 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPS 492 (786)
Q Consensus 424 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~ 492 (786)
.....+.......|+++.|.++|--.+...+-++. .+|..=++++.+.+......+.++......+
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR---~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~ 107 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIR---SLWGIGAEILMRRGEQNSELEFLEWLISFYP 107 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChH---hcchHHHHHHHcCCCcchHHHHHHHHHHHHH
Confidence 34456666677889999999999999987766653 5787778888877766666577776665544
No 450
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.87 E-value=6.4e+02 Score=25.75 Aligned_cols=106 Identities=19% Similarity=0.210 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHH
Q 003918 458 DHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAV 537 (786)
Q Consensus 458 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 537 (786)
+....+...++.+|.+.+++..|.+++.-.-.... .-.....--...+...+++|...++..+|...
T Consensus 100 Eqv~~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg-------------~~~~d~~~kl~l~iriarlyLe~~d~veae~~ 166 (399)
T KOG1497|consen 100 EQVASIRLHLASIYEKEQNWRDAAQVLVGIPLDTG-------------QKAYDVEQKLLLCIRIARLYLEDDDKVEAEAY 166 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhccCcccc-------------hhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHH
Q ss_pred HHHH--HhhccCCHHHHHHH----HHHHHHcccHHHHHHHHHHHH
Q 003918 538 YERI--LDLRIATPQIIINY----ALLLEEHKYFEDAFRVYERGV 576 (786)
Q Consensus 538 ~~~a--l~~~p~~~~~~~~~----~~~~~~~g~~~~A~~~~~~al 576 (786)
..++ +..+..++++...+ +++.-..++|-+|-..|.+..
T Consensus 167 inRaSil~a~~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels 211 (399)
T KOG1497|consen 167 INRASILQAESSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELS 211 (399)
T ss_pred HHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 451
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=28.56 E-value=3.9e+02 Score=23.10 Aligned_cols=27 Identities=4% Similarity=-0.228 Sum_probs=13.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 003918 628 LQYAKLEEDYGLAKRAMKVYDQATKAV 654 (786)
Q Consensus 628 ~~~a~~~~~~g~~~~A~~~~~~~l~~~ 654 (786)
..+.....+.|+.+....+.++.-...
T Consensus 6 ~~ii~al~r~g~~~~i~~~i~~~WgI~ 32 (126)
T PF12921_consen 6 CNIIYALGRSGQLDSIKSYIKSVWGID 32 (126)
T ss_pred HHHHHHHhhcCCHHHHHHHHHHhcCCC
Confidence 333444444566666666665554333
No 452
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=28.43 E-value=1.1e+02 Score=23.64 Aligned_cols=13 Identities=23% Similarity=0.437 Sum_probs=6.5
Q ss_pred hHHHHHHHHHHHh
Q 003918 677 PKTREIYEQAIES 689 (786)
Q Consensus 677 ~~A~~~~~~al~~ 689 (786)
..|.+++.+|++.
T Consensus 4 ~~a~~l~~~Ave~ 16 (77)
T cd02683 4 LAAKEVLKRAVEL 16 (77)
T ss_pred HHHHHHHHHHHHH
Confidence 3455555555544
No 453
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=26.80 E-value=8.1e+02 Score=26.23 Aligned_cols=30 Identities=10% Similarity=0.045 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 003918 515 LRLWTFYVDLEESLGNLESTRAVYERILDL 544 (786)
Q Consensus 515 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 544 (786)
..+++..|-.|..++++..|+.+|..++..
T Consensus 164 is~~YyvGFaylMlrRY~DAir~f~~iL~y 193 (404)
T PF10255_consen 164 ISTYYYVGFAYLMLRRYADAIRTFSQILLY 193 (404)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777788889999999999888763
No 454
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=26.51 E-value=9.3e+02 Score=26.85 Aligned_cols=69 Identities=16% Similarity=0.261 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHhhCC
Q 003918 547 ATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGK--TKLERARELFENAVETAP 619 (786)
Q Consensus 547 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~A~~~~~~al~~~p 619 (786)
+...+|..+|....+.+++..|..-|+++.+. +-.+.+++....+.... +. .+....+++++...+-.|
T Consensus 585 D~f~aW~AWGlA~Lk~e~~aaAR~KFkqafkl-kgedipdvi~diin~ie---Ggpp~dVq~Vrem~dhlak~ap 655 (1141)
T KOG1811|consen 585 DTFGAWHAWGLACLKAENLAAAREKFKQAFKL-KGEDIPDVIFDIINLIE---GGPPRDVQDVREMLDHLAKPAP 655 (1141)
T ss_pred CcccHHHHHHHHHHHhhhHHHHHHHHHHHhCC-CCCccchHHHHHHHhhc---CCCcchHHHHHHHHHHhccCCc
Confidence 34457777777777777777777777777775 22234444444332221 11 134556666666655444
No 455
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=25.81 E-value=3e+02 Score=31.44 Aligned_cols=176 Identities=13% Similarity=0.127 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChh--hHHHHHHHHHHHHH---hccCHHHHHHHHHHHhcCCchHHhh
Q 003918 423 HTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVD--HLASIWCEWAEMEL---RHKNFKGALELMRRATAEPSVEVRR 497 (786)
Q Consensus 423 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~~~~~~a~~~~---~~g~~~~A~~~~~~al~~~~~~~~~ 497 (786)
++.-..+...|....+++.-++..+..-. -|+..+ +...+.+.|+-.+. +.|+.+.|+...-.+++....
T Consensus 201 ~d~V~nlmlSyRDvQdY~amirLVe~Lk~-iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~---- 275 (1226)
T KOG4279|consen 201 PDTVSNLMLSYRDVQDYDAMIRLVEDLKR-IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGP---- 275 (1226)
T ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHh-CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCC----
Confidence 44555555567777788777777665433 343210 00122233333332 357888888887777753320
Q ss_pred hhhccCChhHHHHhhhcHHHHHHHHHHHH---------HcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHccc-HHH
Q 003918 498 RVAADGNEPVQMKLHKSLRLWTFYVDLEE---------SLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKY-FED 567 (786)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~-~~~ 567 (786)
-.+..+...|.+|. ..+..+.|..+|+++++..|.. ..-.+++.++...|. |+.
T Consensus 276 ---------------vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~-~sGIN~atLL~aaG~~Fen 339 (1226)
T KOG4279|consen 276 ---------------VAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLE-YSGINLATLLRAAGEHFEN 339 (1226)
T ss_pred ---------------CCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchh-hccccHHHHHHHhhhhccc
Confidence 12233333333332 2356788999999999987743 445566666666553 444
Q ss_pred HHHHHHHHHhhc---CCCCh----HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCc
Q 003918 568 AFRVYERGVKIF---KYPHV----KDIWVTYLSKFVKRYGKTKLERARELFENAVETAPA 620 (786)
Q Consensus 568 A~~~~~~al~~~---~~p~~----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 620 (786)
..++-.-++++. ..... ..-|-- +.++....-.+++.+|+..-+.+.++.|.
T Consensus 340 s~Elq~IgmkLn~LlgrKG~leklq~YWdV-~~y~~asVLAnd~~kaiqAae~mfKLk~P 398 (1226)
T KOG4279|consen 340 SLELQQIGMKLNSLLGRKGALEKLQEYWDV-ATYFEASVLANDYQKAIQAAEMMFKLKPP 398 (1226)
T ss_pred hHHHHHHHHHHHHHhhccchHHHHHHHHhH-HHhhhhhhhccCHHHHHHHHHHHhccCCc
Confidence 444333333220 00111 122321 11121111236788888888888888776
No 456
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=25.70 E-value=1.1e+03 Score=27.19 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=14.1
Q ss_pred HHHHHHHHhccCHHHHHHHHHH
Q 003918 465 CEWAEMELRHKNFKGALELMRR 486 (786)
Q Consensus 465 ~~~a~~~~~~g~~~~A~~~~~~ 486 (786)
..|-.++.-.|+|+.|++.+-+
T Consensus 262 ~~Yf~~LlLtgqFE~AI~~L~~ 283 (613)
T PF04097_consen 262 LLYFQVLLLTGQFEAAIEFLYR 283 (613)
T ss_dssp --HHHHHHHTT-HHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHHh
Confidence 3345556678888888888776
No 457
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=25.48 E-value=9.9e+02 Score=26.82 Aligned_cols=145 Identities=10% Similarity=0.077 Sum_probs=75.5
Q ss_pred hHHHHHHHHHHHhhccCCH-----HHHHHHHHHHHHc------------ccHHHHHHHHHHHHhhcCCCChHHHHHHHHH
Q 003918 531 LESTRAVYERILDLRIATP-----QIIINYALLLEEH------------KYFEDAFRVYERGVKIFKYPHVKDIWVTYLS 593 (786)
Q Consensus 531 ~~~A~~~~~~al~~~p~~~-----~~~~~~~~~~~~~------------g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~ 593 (786)
.+.+.......-+..|++| ++|.....++... |+.++|+...++.... .+....+- ...
T Consensus 274 qee~~~~~s~~~ek~~s~p~~~~fn~yk~a~KYLR~al~s~p~vlLl~~~~l~eal~~~e~~c~~--~~~~lpi~--~~~ 349 (547)
T PF14929_consen 274 QEEYRESLSNYAEKFPSNPGRSIFNAYKYAVKYLRLALQSNPPVLLLIGGRLKEALNELEKFCIS--STCALPIR--LRA 349 (547)
T ss_pred HHHHHHHHhhccccccCccccchhHHHHHHHHHHHHHhcCCCCeEEeccccHHHHHHHHHHhccC--CCccchHH--HHH
Confidence 3444444433335666666 6676666666321 5677777666664432 12222222 223
Q ss_pred HHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHH---HHhcCCCCchhhHHHHHHHHH
Q 003918 594 KFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQ---ATKAVPNHEKLGMYEIYIARA 670 (786)
Q Consensus 594 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~---~l~~~p~~~~~~~~~~~~~~~ 670 (786)
.+.++++..+......+|+.+.+.+|. +......+..++.. ...+.++.+- -+...| ...+|.-++...
T Consensus 350 ~lle~~d~~~~~~l~~~~e~~~~~~P~--~~~~le~l~~~~~~---~~~~~~Lle~i~~~l~~~~---s~~iwle~~~~~ 421 (547)
T PF14929_consen 350 HLLEYFDQNNSSVLSSCLEDCLKKDPT--MSYSLERLILLHQK---DYSAEQLLEMIALHLDLVP---SHPIWLEFVSCF 421 (547)
T ss_pred HHHHHhCcccHHHHHHHHHHHhcCCCc--HHHHHHHHHhhhhh---HHHHHHHHHHHHHHhhcCC---CchHHHHHHHHH
Confidence 344444545677788888888888887 44444444444322 4444445542 233333 445666666655
Q ss_pred HH-hcChhHHHHHHHHHH
Q 003918 671 AE-IFGVPKTREIYEQAI 687 (786)
Q Consensus 671 ~~-~~~~~~A~~~~~~al 687 (786)
.+ .++++.-.+....++
T Consensus 422 l~~~~~~~~~~e~~~~~l 439 (547)
T PF14929_consen 422 LKNPSRFEDKEEDHKSAL 439 (547)
T ss_pred HhccccccccHHHHHHHH
Confidence 55 344544444444444
No 458
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=25.35 E-value=6.2e+02 Score=24.64 Aligned_cols=97 Identities=15% Similarity=0.053 Sum_probs=0.0
Q ss_pred HHHHcCChhHHHHHHHHHHhccCCChhhH--------HHHHHHHHHHHHhccC-----HHHHHHHHHHHhcCCchHHhhh
Q 003918 432 LYETYKDIANARVIFDKAVQVNYKTVDHL--------ASIWCEWAEMELRHKN-----FKGALELMRRATAEPSVEVRRR 498 (786)
Q Consensus 432 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~--------~~~~~~~a~~~~~~g~-----~~~A~~~~~~al~~~~~~~~~~ 498 (786)
+....|+++.|..+.+-++..+-..|+.+ .+-...++.-....|+ +.....-+..-...+.
T Consensus 92 W~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd------ 165 (230)
T PHA02537 92 WRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPD------ 165 (230)
T ss_pred eeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCCh------
Q ss_pred hhccCChhHHHHhhhcHHHHHHHHHHH---------HHcCChHHHHHHHHHHHhhccC
Q 003918 499 VAADGNEPVQMKLHKSLRLWTFYVDLE---------ESLGNLESTRAVYERILDLRIA 547 (786)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~g~~~~A~~~~~~al~~~p~ 547 (786)
.-...++...|..+ ...++...|...+++|++.+|+
T Consensus 166 -------------~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 166 -------------EVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred -------------HHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC
No 459
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=25.10 E-value=5.9e+02 Score=25.01 Aligned_cols=56 Identities=11% Similarity=-0.007 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhccC------CHHHHHHHHHHHHHcccHHHHHHH
Q 003918 516 RLWTFYVDLEESLGNLESTRAVYERILDLRIA------TPQIIINYALLLEEHKYFEDAFRV 571 (786)
Q Consensus 516 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~g~~~~A~~~ 571 (786)
.+-..+|..+...|++++|...|+.+....-. ...+...+..++...|+.+..+.+
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 34445666777777888888777777543211 112333444455555554444433
No 460
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=24.74 E-value=7.2e+02 Score=24.92 Aligned_cols=132 Identities=14% Similarity=0.190 Sum_probs=73.1
Q ss_pred HHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHc--CChHHHHHHHHHHHhhccCCHHHHHHH
Q 003918 478 KGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESL--GNLESTRAVYERILDLRIATPQIIINY 555 (786)
Q Consensus 478 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~~ 555 (786)
+.-.+....++...| .+-.+|...-.+.... .++..-..+-++.++.+|.+-..|...
T Consensus 91 dneld~~~~~lk~~P--------------------K~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR 150 (328)
T COG5536 91 DNELDFLDEALKDNP--------------------KNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYR 150 (328)
T ss_pred hcHHHHHHHHHhcCC--------------------chhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeE
Confidence 333445666677777 5667777766655543 457777788888888888887777654
Q ss_pred HHHH---HHcccHHHHHHHHH---HHHhhcCCCChHHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHhhCCccCc
Q 003918 556 ALLL---EEHKYFEDAFRVYE---RGVKIFKYPHVKDIWVTYLSKFVKRYGKTK------LERARELFENAVETAPADAV 623 (786)
Q Consensus 556 ~~~~---~~~g~~~~A~~~~~---~al~~~~~p~~~~~~~~~~~~~~~~~~~~~------~~~A~~~~~~al~~~p~~~~ 623 (786)
-.+. ...+++......++ .++. .++.+..+|.............|+ +.+-.++...++-.+|+ +
T Consensus 151 ~~vl~~ie~~~N~S~~k~e~eytt~~I~--tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~--~ 226 (328)
T COG5536 151 RWVLRTIEDLFNFSDLKHELEYTTSLIE--TDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPD--N 226 (328)
T ss_pred eeeeecchhhccchhHHHHHHhHHHHHh--hCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCcc--c
Confidence 3222 22333333333333 3333 478888888765333322222232 23334444455556777 4
Q ss_pred HHHHHHHHHH
Q 003918 624 KPLYLQYAKL 633 (786)
Q Consensus 624 ~~~~~~~a~~ 633 (786)
..+|.-...+
T Consensus 227 ~S~w~y~r~~ 236 (328)
T COG5536 227 QSVWGYLRGV 236 (328)
T ss_pred cchhhHHHHH
Confidence 4556544433
No 461
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=24.53 E-value=3.4e+02 Score=25.20 Aligned_cols=28 Identities=14% Similarity=0.135 Sum_probs=17.0
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHhhCCCC
Q 003918 107 MYLETLTSQKFITKARRTFDRALCALPVT 135 (786)
Q Consensus 107 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 135 (786)
....+++++|.+++|.+++++... +|.+
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~ 143 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFS-DPES 143 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhc-CCCc
Confidence 334456666666666666666666 5543
No 462
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=24.46 E-value=6.5e+02 Score=24.29 Aligned_cols=59 Identities=17% Similarity=0.132 Sum_probs=45.4
Q ss_pred HHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCH
Q 003918 471 ELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATP 549 (786)
Q Consensus 471 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 549 (786)
+++.+...+|+...+.-++..| .+...-..+..++.-.|++++|..-++-+-+..|++.
T Consensus 11 LL~~~sL~dai~~a~~qVkakP--------------------tda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 11 LLDDNSLQDAIGLARDQVKAKP--------------------TDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHhccHHHHHHHHHHHHhcCC--------------------ccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 3567788888888888887777 4555555667777788999999988888888888764
No 463
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=24.45 E-value=1.4e+03 Score=28.17 Aligned_cols=20 Identities=30% Similarity=0.491 Sum_probs=10.4
Q ss_pred HHHHHHcCCHHHHHHHHHHH
Q 003918 631 AKLEEDYGLAKRAMKVYDQA 650 (786)
Q Consensus 631 a~~~~~~g~~~~A~~~~~~~ 650 (786)
|-+|.+.|+.++|.+.|+.+
T Consensus 959 al~Ye~~GklekAl~a~~~~ 978 (1265)
T KOG1920|consen 959 ALMYERCGKLEKALKAYKEC 978 (1265)
T ss_pred HHHHHHhccHHHHHHHHHHh
Confidence 34444555555555555543
No 464
>PF08771 Rapamycin_bind: Rapamycin binding domain; InterPro: IPR009076 Rapamycin and FK506 are potent immunosuppressive agents that bind to the FK506-binding protein (FKBP12), inhibiting its peptidyl-prolyl isomerase activity. The rapamycin-FKBP12 complex can then bind to and inhibit the FKBP12-rapamycin-associated protein (FRAP) in humans and RAFT1 in rats, causing cell-cycle arrest []. The FK506-FKBP12 complex cannot bind FRAP, but can bind to and inhibit calcineurin. Rapamycin is able to bind to two proteins, FKBP12 and FRAP, by simultaneously occupying two hydrophobic binding pockets, thereby linking these two proteins together to form a dimer []. The structure of the FKBP12-rapamycin-binding domain of FRAP consists of a core bundle of four helices arranged up-and-down in a left-handed twist. FRAP has been shown to interact in vitro with CLIP-170, a protein involved in microtubule organisation and function []. FRAP is thought to act as a kinase to phosphorylate CLIP-170, thereby regulating its binding to microtubules. FRAP is also thought to cooperate with p85/p110 phosphatidylinositol 3-kinase (PI3K) to induce the activation of the serine/threonine kinase p70 S6 kinase (p70S6K), which in turn phosphorylates the 40S ribosomal protein S6, thereby altering the translation of ribosomal proteins and translation elongation factors [].; GO: 0016772 transferase activity, transferring phosphorus-containing groups; PDB: 2NPU_A 2RSE_B 4FAP_B 1AUE_A 2GAQ_A 1FAP_B 2FAP_B 3FAP_B 1NSG_B.
Probab=24.03 E-value=4.1e+02 Score=21.85 Aligned_cols=34 Identities=12% Similarity=0.155 Sum_probs=18.5
Q ss_pred ChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Q 003918 675 GVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKS 709 (786)
Q Consensus 675 ~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~ 709 (786)
++..|++.+++.... .....-..+|-.|-.++.+
T Consensus 63 ~L~~A~~~~~~y~~t-~~~~~l~~aW~~y~~v~~~ 96 (100)
T PF08771_consen 63 DLQEAREWLKRYERT-GDETDLNQAWDIYYQVYRR 96 (100)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh-CCHhhHHHHHHHHHHHHHH
Confidence 556677777766655 2222234566666555554
No 465
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=23.86 E-value=1.5e+02 Score=22.82 Aligned_cols=13 Identities=23% Similarity=0.263 Sum_probs=6.2
Q ss_pred hHHHHHHHHHHHh
Q 003918 677 PKTREIYEQAIES 689 (786)
Q Consensus 677 ~~A~~~~~~al~~ 689 (786)
++|+.++.+|++.
T Consensus 4 ~~Ai~lv~~Av~~ 16 (75)
T cd02684 4 EKAIALVVQAVKK 16 (75)
T ss_pred HHHHHHHHHHHHH
Confidence 3445555555443
No 466
>PRK15338 type III secretion system regulator InvE; Provisional
Probab=23.01 E-value=8.9e+02 Score=25.41 Aligned_cols=165 Identities=13% Similarity=0.046 Sum_probs=0.0
Q ss_pred HHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHH
Q 003918 446 FDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLE 525 (786)
Q Consensus 446 ~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (786)
++++++-+.+. .+......+ +.+.....+++..+.+..| +...+|..+..+.
T Consensus 82 ~erILed~aDe-----Kl~~l~~~L---k~~~~~~~~ll~~arq~Fp--------------------D~SDl~~aLreLl 133 (372)
T PRK15338 82 FERVLEDEALP-----KAKQILKLI---SVHGGALEEFLRQARKLFP--------------------DPSDLVLVLRELL 133 (372)
T ss_pred HHHHhccchHH-----HHHHHHHHH---HhcCCCHHHHHHHHHHhCC--------------------CHHHHHHHHHHHH
Q ss_pred HHcCChHHHHHHHHHHHhh-----ccCCHHHHHHH---HHHHHHcccH--HHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q 003918 526 ESLGNLESTRAVYERILDL-----RIATPQIIINY---ALLLEEHKYF--EDAFRVYERGVKIFKYPHVKDIWVTYLSKF 595 (786)
Q Consensus 526 ~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~---~~~~~~~g~~--~~A~~~~~~al~~~~~p~~~~~~~~~~~~~ 595 (786)
.+..-.+.-+...+.+++. +|....+-.+. +......++. ..-..+|...+.. +-.-..+|..++..+
T Consensus 134 ~r~kL~~~~~~~le~al~~Le~e~~~K~ikAGINvAL~Ak~Fs~~~~lsa~~LR~lYR~Fl~~--d~~~~~iY~~Wieey 211 (372)
T PRK15338 134 RRKQLEEIVRKKLESLLKHVEEETDPKTLKAGINCALKARLFGKALSLKPGLLRASYRQFLQS--ESHEVEIYSDWIASY 211 (372)
T ss_pred hCccCCHHHHHHHHHHHHHHHhhcCcHHHHhcCcHHHHHHHHHhhcCCCHHHHHHHHHHHHhc--cCcHHHHHHHHHHHh
Q ss_pred HHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHH
Q 003918 596 VKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKV 646 (786)
Q Consensus 596 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~ 646 (786)
+..+.+.+.....+++..+-+ +...-++...+-.-.+++.+.+.+
T Consensus 212 ----g~~~R~~il~Fl~~AL~~Dlq--S~~Ps~~~~EFG~l~~~l~~LR~L 256 (372)
T PRK15338 212 ----GYQRRLVVLDFIEGSLLTDID--ANDASCSRLEFGQLLRRLTQLKML 256 (372)
T ss_pred ----CccHHHHHHHHHHHHHHhHHh--cCCCCCCHHHHHHHHHHHHHHHHH
No 467
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=22.95 E-value=1.7e+02 Score=22.69 Aligned_cols=15 Identities=33% Similarity=0.226 Sum_probs=6.6
Q ss_pred CChHHHHHHHHHHHc
Q 003918 711 GEIDRARGIYVFASQ 725 (786)
Q Consensus 711 g~~~~A~~~~~~al~ 725 (786)
|++++|..+|..+++
T Consensus 20 g~y~eA~~~Y~~aie 34 (76)
T cd02681 20 GRYSEAVFYYKEAAQ 34 (76)
T ss_pred cCHHHHHHHHHHHHH
Confidence 444444444444433
No 468
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.87 E-value=1.3e+03 Score=27.20 Aligned_cols=56 Identities=13% Similarity=0.017 Sum_probs=34.8
Q ss_pred HHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhc-CCch
Q 003918 434 ETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATA-EPSV 493 (786)
Q Consensus 434 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-~~~~ 493 (786)
.+..-++-|+.+-+. ...+.+....+...||..+.+.|++++|...|-+.+. +.|+
T Consensus 345 ~kK~ly~~Ai~LAk~----~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s 401 (933)
T KOG2114|consen 345 FKKNLYKVAINLAKS----QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPS 401 (933)
T ss_pred HHhhhHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChH
Confidence 344445555554332 1223344567888888888888888888888888775 3443
No 469
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=22.87 E-value=7.2e+02 Score=26.58 Aligned_cols=64 Identities=11% Similarity=0.038 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhccCC-----ChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhc
Q 003918 425 LWVAFAKLYETYKDIANARVIFDKAVQVNYK-----TVDHLASIWCEWAEMELRHKNFKGALELMRRATA 489 (786)
Q Consensus 425 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 489 (786)
...++.+++.-.|++..|.++.+-+-- +.. -+...-.+++..|-.+...+++.+|+++|...+-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl-~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDL-NKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCc-ccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335556667777888888777654311 111 0111125566677777788888888888887763
No 470
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=22.65 E-value=1.5e+02 Score=23.17 Aligned_cols=16 Identities=31% Similarity=0.391 Sum_probs=11.3
Q ss_pred cCChHHHHHHHHHHHh
Q 003918 528 LGNLESTRAVYERILD 543 (786)
Q Consensus 528 ~g~~~~A~~~~~~al~ 543 (786)
.|+.+.|+..|++++.
T Consensus 21 ~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 21 WGDKEQALAHYRKGLR 36 (79)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4677777777777765
No 471
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=22.42 E-value=2.4e+03 Score=30.12 Aligned_cols=504 Identities=13% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhccCCCCC----chhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH--------cCCcH
Q 003918 51 RALKALPGSYKLWHAYLIERLSIVKNLPIT----HPEYETLNNTFERALVTMHKMPRIWIMYLETLT--------SQKFI 118 (786)
Q Consensus 51 ~al~~~P~~~~~w~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~w~~~~~~~~--------~~~~~ 118 (786)
..++-.-+..+.|..-+........+.... +..-.++.....+-+.-..--..+|..-+.+-. +.|..
T Consensus 2419 ~Li~yl~kt~~~wh~~I~lLE~~~~~~~~~~~~~~~~~~dsl~elY~~L~E~Dm~~Glwrrr~~~~eT~~a~s~eQ~G~~ 2498 (3550)
T KOG0889|consen 2419 HLIKYLGKTYNLWHTSIRLLEDHQSNKEMENTKGDESCLDSLAELYRSLNEEDMFYGLWRRRAKFPETMVALSYEQLGFW 2498 (3550)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhccHHHHHHHHHHHhhhH
Q ss_pred HHHHHHHHHHHhhCCCCc------chhhHHH-HHHHHHhcCCChHHHHHHHHHHHccCCCCHHHHHHHHHhcCCHHHHHH
Q 003918 119 TKARRTFDRALCALPVTQ------HDRIWEI-YLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAE 191 (786)
Q Consensus 119 ~~A~~~~~~al~~~p~~~------~~~~w~~-~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~g~~~~A~~ 191 (786)
++|..+|++|-...-... -..+|.. .+.+..+..++ +-..++- ..-.+...+++..-+..+|..-..
T Consensus 2499 e~AQ~lyekaq~Ka~~~~~~~~~~Ey~lWed~WI~Ca~eL~QW-dvl~e~~-----k~~~~~~llle~aWrlsdw~~~~~ 2572 (3550)
T KOG0889|consen 2499 EEAQSLYEKAQVKAREGAIPYSESEYKLWEDHWIRCASELQQW-DVLTEFG-----KHEGNYELLLECAWRLSDWNDQKD 2572 (3550)
T ss_pred HHHhhHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHH-----hccCCceeeeehhccCCcchhHHH
Q ss_pred HHHHHhcCCCccccCCCcchHHHHHHHHHHhcccccccCCcHHHHHHhhhh---ccCchhHHHHHHHHHHHHhhccHHHH
Q 003918 192 RLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIR---KFTDEVGRLWTSLADYYIRRELFEKA 268 (786)
Q Consensus 192 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~p~~~~~~~~~la~~y~~~g~~~~A 268 (786)
.++.......-.......-.+.+..+.....+ +.......+.+.++..+. ..|.-.......+-+....--+..+|
T Consensus 2573 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~i~e~~~l~i~~w~~lP~~v~~~h~~lL~~~QqivEl~Ea 2651 (3550)
T KOG0889|consen 2573 ALEQKAKSLSDVPGFRKELYDAFLALQKKNSN-GVGEFERLIGEAIQLAIREWRQLPERVNHGHVPLLQAFQQIVELQEA 2651 (3550)
T ss_pred HHHHhhhccCCCCcHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhccCchhcHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhHhcccc
Q 003918 269 RDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFW 348 (786)
Q Consensus 269 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (786)
..+|......+-...+
T Consensus 2652 ~~I~s~l~~~n~~n~~---------------------------------------------------------------- 2667 (3550)
T KOG0889|consen 2652 AQIYSDLNDGNVQNLD---------------------------------------------------------------- 2667 (3550)
T ss_pred HHHHHhcccccccccc----------------------------------------------------------------
Q ss_pred cCccchHHHHHHHHHhhhhhchhhhhhhhhhcCCCCHHHHHHHHHhhcCCchhHHHHHHH-------------HHhccCC
Q 003918 349 LHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTE-------------AVRTVDP 415 (786)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~-------------al~~~~~ 415 (786)
....+....+.....- +-...++...|..+..+-..-+.-....|+. ..+-...
T Consensus 2668 -~~~~d~Ksil~~Wr~R------------lP~~~Dd~~~Wsdl~~WRq~~y~~I~~~~~~~~~~~~~~~ns~~~~~Gyhe 2734 (3550)
T KOG0889|consen 2668 -NKAQDIKSILQTWRDR------------LPNVWDDMNQWSDLITWRQHAYSMINKAYLPLVPYKQNASNSNNLYRGYHE 2734 (3550)
T ss_pred -hhHHHHHHHHHHHhhc------------CCCcchhHHHHHHHHHHHHHHHHHHHHHhcccchhhhccCCcchHHHhHHH
Q ss_pred CccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcc-CHHHHHHHHHHHhcCCchH
Q 003918 416 MKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHK-NFKGALELMRRATAEPSVE 494 (786)
Q Consensus 416 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~~~~ 494 (786)
...+-...|+...+.|-++-+.....+.....--.+.+.-.=...=+..+.++. ....+.++.+..=-..=..
T Consensus 2735 ------~A~~in~fakvArkh~l~~vcl~~L~~iytlp~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~ 2808 (3550)
T KOG0889|consen 2735 ------LAWAINRFAKVARKHGLPDVCLNQLAKIYTLPNVEIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSD 2808 (3550)
T ss_pred ------HHHHHHHHHHHHHhcCChHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhh
Q ss_pred HhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHc--ccHH------
Q 003918 495 VRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEH--KYFE------ 566 (786)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~--g~~~------ 566 (786)
- ....++..-|.+..+.|+.++|-+.|..|++++...+.+|..+|...... +...
T Consensus 2809 ~-----------------q~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~ 2871 (3550)
T KOG0889|consen 2809 R-----------------QKAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFAC 2871 (3550)
T ss_pred H-----------------HHHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHH
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHH---cCCHHHH
Q 003918 567 DAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEED---YGLAKRA 643 (786)
Q Consensus 567 ~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~---~g~~~~A 643 (786)
.|+.+|-+|......-..-......+..+. ++.|-...-++++..-.+-..-.|..+.--... .++-+-+
T Consensus 2872 ~avsCyLqA~~~~~~skaRk~iakvLwLls-------~dda~~~l~~~~~k~l~~ip~~~wl~~IPQLl~sLs~~e~~~~ 2944 (3550)
T KOG0889|consen 2872 NAVSCYLQAARLYNSSKARKLIAKVLWLLS-------FDDSLGTLGDVFDKFLGEIPVWNWLYFIPQLLTSLSKKEAKLV 2944 (3550)
T ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHH-------hccccchHHHHHHHhhccCCchhhhhhhHHHHhhccccchhHH
Q ss_pred HHHHHHHHhcCCCCchhhHHHHHHH
Q 003918 644 MKVYDQATKAVPNHEKLGMYEIYIA 668 (786)
Q Consensus 644 ~~~~~~~l~~~p~~~~~~~~~~~~~ 668 (786)
.-++.+.-+..|-.-...+..++..
T Consensus 2945 ~~iL~kia~~yPQal~f~lRta~~~ 2969 (3550)
T KOG0889|consen 2945 RLILIKIAKSYPQALYFPLRTARED 2969 (3550)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHH
No 472
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=22.32 E-value=3.8e+02 Score=20.79 Aligned_cols=17 Identities=24% Similarity=0.649 Sum_probs=8.7
Q ss_pred HcccHHHHHHHHHHHHh
Q 003918 561 EHKYFEDAFRVYERGVK 577 (786)
Q Consensus 561 ~~g~~~~A~~~~~~al~ 577 (786)
+.|++++|+.+|..++.
T Consensus 18 ~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 18 QEGRFQEALVCYQEGID 34 (77)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 34555555555555544
No 473
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=22.24 E-value=1.3e+02 Score=31.46 Aligned_cols=32 Identities=9% Similarity=0.132 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHhhccCCHHHHHHHHHHHHHccc
Q 003918 531 LESTRAVYERILDLRIATPQIIINYALLLEEHKY 564 (786)
Q Consensus 531 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~ 564 (786)
+..|+..+++|.. .++|+.|...|.+++..|+
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGN 365 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGN 365 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhc
Confidence 3456666666655 5788999999999998886
No 474
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=22.11 E-value=1e+03 Score=25.67 Aligned_cols=181 Identities=17% Similarity=0.078 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q 003918 516 RLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKF 595 (786)
Q Consensus 516 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~ 595 (786)
.....++++.-..|+++-|...|+.+..-. .+..+|..+|..++-.+ +.++-..... + ...-...+..
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df-~~Dkaw~~~A~~~Em~a-----lsl~~~~~~~---~--~k~~~~~~~~- 276 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDF-KNDKAWKYLAGAQEMAA-----LSLLMQGQSI---S--AKIRKDEIEP- 276 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHH-hhchhHHHHHhHHHHHH-----HHHHhcCCCC---c--cccccccHHH-
Confidence 345567888888888888888888877632 23466777665543322 2222111110 0 0000000000
Q ss_pred HHHhCCCChHHHHHHHHHHHh---hCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCchhhHHHHHHHHH
Q 003918 596 VKRYGKTKLERARELFENAVE---TAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAV--PNHEKLGMYEIYIARA 670 (786)
Q Consensus 596 ~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~ 670 (786)
-++.|...|.++-. ..|. ......+..+.+....|.+.+|...+-+..... .+...+. .+.+.
T Consensus 277 -------~le~A~~~Y~~~~~~~~~~~~-~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~--~alll-- 344 (414)
T PF12739_consen 277 -------YLENAYYTYLKSALPRCSLPY-YALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFG--SALLL-- 344 (414)
T ss_pred -------HHHHHHHHHHhhhcccccccc-chHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHh--hHHHH--
Confidence 13334444554211 1111 123444555666666788777776666655442 1111000 11111
Q ss_pred HHhcChhHHHHHHHHHHHhcCC--C---hhHHHHHHHH-HHHHHHcCChHHHHHHHHHHHccC
Q 003918 671 AEIFGVPKTREIYEQAIESGLP--D---KDVKAMCLKY-AELEKSLGEIDRARGIYVFASQFA 727 (786)
Q Consensus 671 ~~~~~~~~A~~~~~~al~~~~p--~---~~~~~~~~~~-~~~~~~~g~~~~A~~~~~~al~~~ 727 (786)
+.+--.| ..+....| . -.-...|+-+ |..+.+.|....|..+|.+|+...
T Consensus 345 ------E~~a~~~-~~~~~~~~~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY 400 (414)
T PF12739_consen 345 ------EQAAYCY-ASLRSNRPSPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVY 400 (414)
T ss_pred ------HHHHHhh-cccccCCCCccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 1111111 00111011 1 0112344444 557889999999999999999863
No 475
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.02 E-value=1.4e+03 Score=27.35 Aligned_cols=28 Identities=18% Similarity=0.349 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHhhc
Q 003918 251 LWTSLADYYIRRELFEKARDIFEEGMMT 278 (786)
Q Consensus 251 ~~~~la~~y~~~g~~~~A~~~~~~al~~ 278 (786)
-+..|+.+|...|+.++|++.+.+....
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 4678899999999999999999998864
No 476
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=21.83 E-value=1.5e+03 Score=27.57 Aligned_cols=104 Identities=14% Similarity=0.192 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHhCCC-C-hHHHHHHHHHHHhhCCccC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 003918 585 KDIWVTYLSKFVKRYGKT-K-LERARELFENAVETAPADA----VKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHE 658 (786)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~-~-~~~A~~~~~~al~~~p~~~----~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~ 658 (786)
...|..|+..+...+..| . ....+.+.++++...++.. +..+...+.. +.....+.++..+|..+...--...
T Consensus 34 l~~w~ryi~wv~~~~~~~~~~~~~l~~~lerc~~~~~~lk~Y~nD~Rfl~~~~~-~~~~e~~~d~~d~f~~m~~kgIg~~ 112 (974)
T KOG1166|consen 34 LDKWLRYIEWVLEVYPEGKENQSLLRNLLERCLEELEDLKRYRNDPRFLILWCS-LELREELQDAEDFFSYLENKGIGTT 112 (974)
T ss_pred hhhhHhHhhhhhhccccCCchhhhHHHHHHHHHHhccchhhccccHHHHHHHHh-HHHHHHHhhHHHHHHHHHhccccch
Confidence 345666666554433222 2 4556666666666543310 1221111111 2234556667777776665444333
Q ss_pred hhhHHHHHHHHHHHhcChhHHHHHHHHHHHh
Q 003918 659 KLGMYEIYIARAAEIFGVPKTREIYEQAIES 689 (786)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 689 (786)
...++..|...+.+.+.+.+|..+|..+++.
T Consensus 113 lalfYe~~a~~lE~k~~~keA~~v~q~Giq~ 143 (974)
T KOG1166|consen 113 LALFYEAYAKHLERKEYFKEAKEVFQLGIQN 143 (974)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555556666777777777777765
No 477
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=20.22 E-value=2.4e+02 Score=24.15 Aligned_cols=37 Identities=14% Similarity=0.271 Sum_probs=28.2
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHhhccCchhcHHHHH
Q 003918 253 TSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIF 289 (786)
Q Consensus 253 ~~la~~y~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 289 (786)
..+|..+...|++++|...|-+|+...|++.++..++
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL~i~ 103 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQPAELLQIY 103 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 4567777888999999999999999988876543333
No 478
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=20.19 E-value=3.1e+02 Score=23.76 Aligned_cols=33 Identities=18% Similarity=0.122 Sum_probs=25.7
Q ss_pred cCChhhHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 003918 39 EAPFKKRFVIYERALKALPGSYKLWHAYLIERL 71 (786)
Q Consensus 39 ~~~~~~~~~~~~~al~~~P~~~~~w~~~~~~~~ 71 (786)
+-+.+.+..+|+..++.+|+...+.+.++.-.-
T Consensus 89 Kle~e~Ae~vY~el~~~~P~HLpaHla~i~~lD 121 (139)
T PF12583_consen 89 KLEPENAEQVYEELLEAHPDHLPAHLAMIQNLD 121 (139)
T ss_dssp TS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHH
T ss_pred hhCHHHHHHHHHHHHHHCcchHHHHHHHHHccC
Confidence 456688999999999999999999888887654
Done!