Query 003918
Match_columns 786
No_of_seqs 290 out of 3600
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 08:15:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003918.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003918hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ooe_A Cleavage stimulation fa 100.0 7.7E-35 2.6E-39 326.4 44.5 147 15-172 1-162 (530)
2 2xpi_A Anaphase-promoting comp 100.0 1.6E-34 5.6E-39 329.6 46.8 481 58-743 82-594 (597)
3 4e6h_A MRNA 3'-END-processing 100.0 5.4E-34 1.9E-38 319.7 46.8 493 8-663 47-580 (679)
4 2ooe_A Cleavage stimulation fa 100.0 2.3E-33 7.8E-38 314.5 49.1 452 48-693 1-495 (530)
5 1w3b_A UDP-N-acetylglucosamine 100.0 1.9E-32 6.4E-37 294.5 48.7 205 397-638 183-387 (388)
6 2xpi_A Anaphase-promoting comp 100.0 1E-32 3.6E-37 314.7 48.7 496 100-769 82-586 (597)
7 1w3b_A UDP-N-acetylglucosamine 100.0 2.4E-32 8.4E-37 293.7 47.0 327 378-748 60-388 (388)
8 4e6h_A MRNA 3'-END-processing 100.0 3.1E-31 1.1E-35 297.3 48.1 482 42-696 48-576 (679)
9 3fp2_A TPR repeat-containing p 100.0 2.2E-30 7.4E-35 291.3 33.4 452 59-660 24-498 (537)
10 2gw1_A Mitochondrial precursor 100.0 5.4E-29 1.9E-33 278.2 40.1 447 59-664 5-489 (514)
11 3fp2_A TPR repeat-containing p 100.0 3.2E-29 1.1E-33 281.7 37.5 444 100-730 23-494 (537)
12 2gw1_A Mitochondrial precursor 100.0 7.7E-28 2.6E-32 268.8 45.0 286 421-739 184-489 (514)
13 2y4t_A DNAJ homolog subfamily 100.0 3.9E-27 1.3E-31 258.4 42.3 349 45-636 11-375 (450)
14 2y4t_A DNAJ homolog subfamily 100.0 2.3E-27 7.8E-32 260.3 39.2 324 377-742 18-372 (450)
15 3ieg_A DNAJ homolog subfamily 100.0 6.3E-26 2.1E-30 240.3 43.1 333 384-746 2-353 (359)
16 3ieg_A DNAJ homolog subfamily 100.0 1.8E-25 6.1E-30 236.8 40.5 311 422-766 2-339 (359)
17 4g1t_A Interferon-induced prot 99.9 5.6E-25 1.9E-29 242.8 31.5 283 397-730 152-462 (472)
18 3hym_B Cell division cycle pro 99.9 1E-24 3.4E-29 228.2 31.6 295 421-751 20-323 (330)
19 2uy1_A Cleavage stimulation fa 99.9 3E-24 1E-28 234.9 31.9 247 401-684 197-447 (493)
20 3hym_B Cell division cycle pro 99.9 5.9E-24 2E-28 222.3 30.7 295 378-714 15-322 (330)
21 4g1t_A Interferon-induced prot 99.9 1.1E-22 3.7E-27 224.5 37.8 253 378-694 202-463 (472)
22 1fch_A Peroxisomal targeting s 99.9 7E-24 2.4E-28 225.6 26.6 294 433-757 35-354 (368)
23 1fch_A Peroxisomal targeting s 99.9 9.3E-24 3.2E-28 224.7 25.2 293 397-726 39-359 (368)
24 2uy1_A Cleavage stimulation fa 99.9 6.5E-22 2.2E-26 216.4 36.3 309 402-760 67-411 (493)
25 4eqf_A PEX5-related protein; a 99.9 4.6E-23 1.6E-27 219.2 26.1 269 423-725 65-355 (365)
26 4eqf_A PEX5-related protein; a 99.9 5.8E-23 2E-27 218.4 26.5 283 443-756 47-350 (365)
27 2ond_A Cleavage stimulation fa 99.9 3.8E-22 1.3E-26 206.3 27.6 239 384-657 7-274 (308)
28 2ond_A Cleavage stimulation fa 99.9 5.9E-22 2E-26 204.8 29.1 243 421-694 6-274 (308)
29 3cv0_A Peroxisome targeting si 99.9 7.8E-22 2.7E-26 205.8 26.9 269 424-726 22-315 (327)
30 2h6f_A Protein farnesyltransfe 99.9 6.6E-22 2.2E-26 208.6 26.2 253 421-709 95-365 (382)
31 2h6f_A Protein farnesyltransfe 99.9 5.9E-22 2E-26 208.9 23.9 252 378-665 90-360 (382)
32 2xm6_A Protein corresponding t 99.9 2.4E-19 8.1E-24 198.4 45.5 213 397-655 201-434 (490)
33 2xm6_A Protein corresponding t 99.9 3.4E-19 1.2E-23 197.2 46.7 278 397-726 165-471 (490)
34 3cv0_A Peroxisome targeting si 99.9 6E-21 2E-25 199.1 27.1 263 462-757 22-310 (327)
35 2pl2_A Hypothetical conserved 99.9 1.2E-20 4.2E-25 183.9 22.7 199 421-651 3-212 (217)
36 3u4t_A TPR repeat-containing p 99.9 1.7E-20 5.7E-25 190.2 23.9 263 423-746 3-268 (272)
37 3u4t_A TPR repeat-containing p 99.9 4.9E-20 1.7E-24 186.7 23.8 244 515-770 3-256 (272)
38 2pl2_A Hypothetical conserved 99.8 8E-20 2.7E-24 178.0 22.3 198 382-615 2-212 (217)
39 3uq3_A Heat shock protein STI1 99.8 4.5E-19 1.5E-23 177.8 27.7 234 422-691 4-237 (258)
40 3mkr_A Coatomer subunit epsilo 99.8 1.2E-18 4.1E-23 177.6 29.2 255 393-695 9-269 (291)
41 3mkr_A Coatomer subunit epsilo 99.8 1.4E-18 4.9E-23 177.1 28.2 273 432-753 8-285 (291)
42 1xi4_A Clathrin heavy chain; a 99.8 1E-15 3.5E-20 176.2 54.0 402 82-648 999-1440(1630)
43 3sf4_A G-protein-signaling mod 99.8 4.8E-19 1.6E-23 190.8 25.4 311 421-749 7-363 (406)
44 3uq3_A Heat shock protein STI1 99.8 2.1E-18 7.3E-23 172.8 27.3 237 461-740 5-254 (258)
45 4a1s_A PINS, partner of inscut 99.8 6.2E-19 2.1E-23 190.5 23.6 287 422-726 47-372 (411)
46 1xi4_A Clathrin heavy chain; a 99.8 7.8E-16 2.7E-20 177.2 49.1 306 382-757 1102-1440(1630)
47 3ro2_A PINS homolog, G-protein 99.8 1.4E-18 4.7E-23 181.6 24.5 286 423-726 5-332 (338)
48 2q7f_A YRRB protein; TPR, prot 99.8 1.2E-18 4.1E-23 173.0 21.4 209 422-661 22-230 (243)
49 1xnf_A Lipoprotein NLPI; TPR, 99.8 2.9E-18 9.8E-23 173.9 23.4 252 472-756 16-269 (275)
50 2ho1_A Type 4 fimbrial biogene 99.8 8.4E-18 2.9E-22 168.1 26.0 205 423-658 37-243 (252)
51 3vtx_A MAMA; tetratricopeptide 99.8 3.9E-18 1.3E-22 161.4 21.6 171 421-620 3-173 (184)
52 1xnf_A Lipoprotein NLPI; TPR, 99.8 2.7E-18 9.2E-23 174.1 21.8 228 397-657 19-248 (275)
53 2vq2_A PILW, putative fimbrial 99.8 1.7E-17 5.9E-22 162.3 26.7 208 421-659 6-217 (225)
54 3sf4_A G-protein-signaling mod 99.8 4.3E-18 1.5E-22 183.2 22.3 312 384-715 8-365 (406)
55 2q7f_A YRRB protein; TPR, prot 99.8 7.4E-18 2.5E-22 167.3 22.2 221 513-747 21-241 (243)
56 3vtx_A MAMA; tetratricopeptide 99.8 1.1E-17 3.6E-22 158.4 20.7 168 462-656 6-173 (184)
57 2ho1_A Type 4 fimbrial biogene 99.8 5.4E-17 1.9E-21 162.1 26.8 212 379-627 30-246 (252)
58 2vq2_A PILW, putative fimbrial 99.8 3.1E-16 1.1E-20 153.3 29.4 211 513-737 6-220 (225)
59 4a1s_A PINS, partner of inscut 99.8 1.3E-17 4.5E-22 180.0 20.9 285 385-693 48-375 (411)
60 4abn_A Tetratricopeptide repea 99.8 1.8E-17 6.1E-22 181.6 22.1 213 399-649 84-317 (474)
61 3ro2_A PINS homolog, G-protein 99.7 3.3E-17 1.1E-21 171.0 20.3 286 388-693 8-335 (338)
62 1ouv_A Conserved hypothetical 99.7 1.7E-15 5.9E-20 153.3 32.2 230 421-693 4-254 (273)
63 3e4b_A ALGK; tetratricopeptide 99.7 1.9E-16 6.6E-21 172.3 26.8 319 384-759 68-418 (452)
64 1ouv_A Conserved hypothetical 99.7 5.5E-16 1.9E-20 156.9 28.3 231 381-657 2-255 (273)
65 4i17_A Hypothetical protein; T 99.7 4.8E-16 1.6E-20 152.7 26.5 202 421-660 5-216 (228)
66 4abn_A Tetratricopeptide repea 99.7 6.8E-17 2.3E-21 177.0 21.0 215 475-722 82-317 (474)
67 3e4b_A ALGK; tetratricopeptide 99.7 4.1E-15 1.4E-19 161.8 31.7 79 82-168 17-103 (452)
68 4gyw_A UDP-N-acetylglucosamine 99.7 1.4E-16 4.7E-21 181.2 19.4 173 419-620 5-177 (723)
69 3ulq_A Response regulator aspa 99.7 5.4E-15 1.9E-19 157.8 28.8 245 391-655 109-370 (383)
70 3nf1_A KLC 1, kinesin light ch 99.7 2.5E-16 8.6E-21 162.5 17.5 237 462-726 28-307 (311)
71 4i17_A Hypothetical protein; T 99.7 3E-15 1E-19 146.9 24.3 210 382-634 4-224 (228)
72 4gyw_A UDP-N-acetylglucosamine 99.7 4.1E-16 1.4E-20 177.3 18.6 173 453-656 5-177 (723)
73 3ulq_A Response regulator aspa 99.7 3.9E-15 1.3E-19 158.8 24.9 306 396-726 25-368 (383)
74 3nf1_A KLC 1, kinesin light ch 99.7 2.4E-16 8.1E-21 162.7 14.5 263 379-656 21-310 (311)
75 3dra_A Protein farnesyltransfe 99.7 1.2E-14 4.1E-19 146.8 26.1 230 399-664 49-299 (306)
76 3dra_A Protein farnesyltransfe 99.7 1.1E-14 3.9E-19 146.9 25.5 235 475-741 47-301 (306)
77 3q15_A PSP28, response regulat 99.7 4.5E-14 1.5E-18 150.3 31.5 247 387-653 103-365 (378)
78 3as5_A MAMA; tetratricopeptide 99.6 1.6E-14 5.4E-19 136.1 21.2 171 461-658 8-178 (186)
79 1hz4_A MALT regulatory protein 99.6 1.7E-13 5.8E-18 145.5 30.5 285 424-726 15-322 (373)
80 3q15_A PSP28, response regulat 99.6 2.2E-13 7.4E-18 145.0 30.4 307 396-726 25-365 (378)
81 3urz_A Uncharacterized protein 99.6 9.3E-15 3.2E-19 141.0 17.8 187 422-656 3-189 (208)
82 3as5_A MAMA; tetratricopeptide 99.6 1.8E-14 6.2E-19 135.7 19.2 171 422-621 7-177 (186)
83 3urz_A Uncharacterized protein 99.6 1.4E-14 4.9E-19 139.6 18.6 185 462-695 5-191 (208)
84 2pzi_A Probable serine/threoni 99.6 1.2E-14 4E-19 166.6 20.9 182 379-593 388-576 (681)
85 4ga2_A E3 SUMO-protein ligase 99.6 4.8E-15 1.6E-19 134.5 14.2 146 467-639 3-149 (150)
86 3qky_A Outer membrane assembly 99.6 1.9E-14 6.3E-19 144.5 19.3 200 421-660 13-231 (261)
87 1b89_A Protein (clathrin heavy 99.6 2E-14 7E-19 149.3 19.5 219 516-758 178-413 (449)
88 1b89_A Protein (clathrin heavy 99.6 6.1E-16 2.1E-20 160.7 7.9 282 397-756 17-305 (449)
89 4ga2_A E3 SUMO-protein ligase 99.6 2E-15 6.8E-20 137.1 10.4 138 429-592 3-141 (150)
90 1qqe_A Vesicular transport pro 99.6 2.9E-14 1E-18 145.6 20.3 210 524-739 46-280 (292)
91 3qky_A Outer membrane assembly 99.6 8.7E-14 3E-18 139.6 22.4 217 451-716 9-251 (261)
92 1qqe_A Vesicular transport pro 99.6 2.5E-14 8.7E-19 146.0 18.6 257 401-705 3-282 (292)
93 1hz4_A MALT regulatory protein 99.6 4.9E-13 1.7E-17 142.0 29.2 319 395-739 26-359 (373)
94 2pzi_A Probable serine/threoni 99.6 1.1E-14 3.6E-19 166.9 17.3 188 412-639 388-583 (681)
95 3edt_B KLC 2, kinesin light ch 99.6 1.8E-14 6.3E-19 146.0 16.6 233 397-653 15-281 (283)
96 3dss_A Geranylgeranyl transfer 99.6 2E-12 6.9E-17 131.0 29.7 247 435-741 41-317 (331)
97 3edt_B KLC 2, kinesin light ch 99.6 4.7E-14 1.6E-18 143.0 17.8 206 513-726 41-281 (283)
98 3dss_A Geranylgeranyl transfer 99.5 1.8E-12 6.3E-17 131.3 26.5 240 473-766 41-308 (331)
99 3q7a_A Farnesyltransferase alp 99.5 7.4E-13 2.5E-17 134.7 23.4 234 397-663 68-342 (349)
100 3q7a_A Farnesyltransferase alp 99.5 9.7E-13 3.3E-17 133.8 24.2 240 473-742 66-346 (349)
101 2r5s_A Uncharacterized protein 99.5 2.1E-13 7.2E-18 127.6 17.3 167 516-689 7-173 (176)
102 3qou_A Protein YBBN; thioredox 99.5 7.2E-13 2.5E-17 134.7 20.1 168 421-617 115-284 (287)
103 3qou_A Protein YBBN; thioredox 99.5 1.6E-12 5.4E-17 132.1 22.3 170 513-689 115-284 (287)
104 2yhc_A BAMD, UPF0169 lipoprote 99.5 7.6E-13 2.6E-17 129.3 19.2 194 422-658 3-218 (225)
105 2yhc_A BAMD, UPF0169 lipoprote 99.5 1.7E-12 5.9E-17 126.8 20.8 190 462-693 5-216 (225)
106 2r5s_A Uncharacterized protein 99.5 1.9E-13 6.5E-18 127.9 13.2 167 422-616 5-172 (176)
107 4gco_A Protein STI-1; structur 99.5 3.7E-13 1.3E-17 117.7 13.8 114 421-558 11-124 (126)
108 3gyz_A Chaperone protein IPGC; 99.5 9.2E-14 3.1E-18 125.3 8.2 115 444-584 23-137 (151)
109 4gco_A Protein STI-1; structur 99.5 5.9E-13 2E-17 116.4 13.2 106 462-589 14-119 (126)
110 2vsy_A XCC0866; transferase, g 99.4 1.4E-12 4.7E-17 146.9 18.0 158 437-620 3-160 (568)
111 2ifu_A Gamma-SNAP; membrane fu 99.4 8.6E-12 2.9E-16 128.2 22.4 54 602-655 129-186 (307)
112 2vsy_A XCC0866; transferase, g 99.4 1.9E-12 6.7E-17 145.6 18.2 161 397-589 3-166 (568)
113 3gyz_A Chaperone protein IPGC; 99.4 2.7E-13 9.3E-18 122.1 8.7 116 536-658 23-138 (151)
114 2fo7_A Synthetic consensus TPR 99.4 7E-12 2.4E-16 110.7 17.3 130 425-578 3-132 (136)
115 2c2l_A CHIP, carboxy terminus 99.4 2.9E-12 9.8E-17 129.7 14.3 198 421-654 2-200 (281)
116 2fo7_A Synthetic consensus TPR 99.4 3.2E-11 1.1E-15 106.4 19.3 134 516-656 2-135 (136)
117 2vgx_A Chaperone SYCD; alterna 99.4 3.1E-12 1.1E-16 115.4 12.0 122 534-662 6-127 (148)
118 4f3v_A ESX-1 secretion system 99.4 6.8E-12 2.3E-16 123.3 14.0 212 435-656 18-240 (282)
119 2vgx_A Chaperone SYCD; alterna 99.3 4.4E-12 1.5E-16 114.4 11.6 112 443-578 7-118 (148)
120 2ifu_A Gamma-SNAP; membrane fu 99.3 3.8E-11 1.3E-15 123.3 19.4 211 397-659 5-229 (307)
121 2c2l_A CHIP, carboxy terminus 99.3 3.8E-12 1.3E-16 128.8 11.3 188 462-688 5-198 (281)
122 4f3v_A ESX-1 secretion system 99.3 1.1E-11 3.8E-16 121.8 14.2 201 527-741 18-249 (282)
123 3rjv_A Putative SEL1 repeat pr 99.3 1E-10 3.6E-15 112.7 20.8 178 401-620 4-200 (212)
124 1a17_A Serine/threonine protei 99.3 6.4E-11 2.2E-15 109.0 17.3 133 422-578 12-146 (166)
125 2e2e_A Formate-dependent nitri 99.3 2.4E-11 8.2E-16 113.5 14.2 127 434-586 21-150 (177)
126 2xcb_A PCRH, regulatory protei 99.3 1.1E-11 3.8E-16 111.1 11.4 105 422-550 17-121 (142)
127 2e2e_A Formate-dependent nitri 99.3 3.7E-11 1.3E-15 112.2 15.2 128 527-660 22-151 (177)
128 1p5q_A FKBP52, FK506-binding p 99.3 5.6E-12 1.9E-16 131.1 10.3 156 397-578 127-294 (336)
129 3rjv_A Putative SEL1 repeat pr 99.3 2.1E-10 7E-15 110.6 20.6 167 514-689 17-197 (212)
130 2xcb_A PCRH, regulatory protei 99.3 1.8E-11 6.1E-16 109.7 11.8 121 536-663 5-125 (142)
131 2lni_A Stress-induced-phosphop 99.3 9.1E-11 3.1E-15 103.3 14.9 121 420-564 13-133 (133)
132 1p5q_A FKBP52, FK506-binding p 99.3 9.2E-12 3.1E-16 129.5 9.6 134 513-653 145-294 (336)
133 3upv_A Heat shock protein STI1 99.3 8.3E-11 2.8E-15 102.8 14.4 112 423-558 4-121 (126)
134 2vyi_A SGTA protein; chaperone 99.2 1.8E-10 6E-15 101.0 14.9 121 421-565 10-130 (131)
135 1a17_A Serine/threonine protei 99.2 4.5E-10 1.5E-14 103.3 17.2 134 513-653 11-146 (166)
136 1dce_A Protein (RAB geranylger 99.2 5.5E-10 1.9E-14 123.9 20.5 176 439-642 45-244 (567)
137 1dce_A Protein (RAB geranylger 99.2 1.3E-10 4.5E-15 128.8 15.5 196 526-730 39-270 (567)
138 3upv_A Heat shock protein STI1 99.2 2.4E-10 8.1E-15 99.8 14.1 97 462-578 5-101 (126)
139 1hh8_A P67PHOX, NCF-2, neutrop 99.2 3.4E-10 1.2E-14 109.1 16.4 126 426-578 9-150 (213)
140 1na0_A Designed protein CTPR3; 99.2 5.7E-10 2E-14 96.7 15.7 118 422-563 8-125 (125)
141 3sz7_A HSC70 cochaperone (SGT) 99.2 2E-10 6.9E-15 105.7 13.4 113 421-557 9-121 (164)
142 1elw_A TPR1-domain of HOP; HOP 99.2 5.3E-10 1.8E-14 95.8 14.9 112 423-558 4-115 (118)
143 1hh8_A P67PHOX, NCF-2, neutrop 99.2 1E-09 3.6E-14 105.7 18.2 134 516-657 7-154 (213)
144 1hxi_A PEX5, peroxisome target 99.2 2.1E-10 7.3E-15 99.2 11.9 99 464-584 20-118 (121)
145 3mv2_B Coatomer subunit epsilo 99.1 3.9E-09 1.3E-13 105.1 21.5 168 516-693 101-285 (310)
146 2vyi_A SGTA protein; chaperone 99.1 1E-09 3.5E-14 96.0 15.5 121 513-640 10-130 (131)
147 3q49_B STIP1 homology and U bo 99.1 6.7E-10 2.3E-14 98.4 14.3 116 421-560 7-127 (137)
148 2lni_A Stress-induced-phosphop 99.1 7.5E-10 2.6E-14 97.3 14.4 120 513-639 14-133 (133)
149 3mv2_B Coatomer subunit epsilo 99.1 3.5E-08 1.2E-12 98.3 27.6 181 534-730 85-285 (310)
150 1hxi_A PEX5, peroxisome target 99.1 2.5E-10 8.7E-15 98.7 10.7 102 425-550 19-120 (121)
151 2fbn_A 70 kDa peptidylprolyl i 99.1 1.1E-10 3.7E-15 111.3 9.0 150 433-593 14-164 (198)
152 3sz7_A HSC70 cochaperone (SGT) 99.1 7.1E-10 2.4E-14 101.9 14.2 101 515-620 11-111 (164)
153 2fbn_A 70 kDa peptidylprolyl i 99.1 1.5E-10 5.1E-15 110.3 9.6 124 514-644 37-176 (198)
154 4gcn_A Protein STI-1; structur 99.1 1.1E-09 3.8E-14 95.6 14.2 115 421-553 6-120 (127)
155 2qfc_A PLCR protein; TPR, HTH, 99.1 1.6E-09 5.5E-14 110.3 17.0 182 382-579 72-267 (293)
156 2qfc_A PLCR protein; TPR, HTH, 99.1 8.3E-09 2.8E-13 105.0 22.2 179 422-617 74-266 (293)
157 1elw_A TPR1-domain of HOP; HOP 99.1 3.2E-09 1.1E-13 90.8 15.6 114 514-634 3-116 (118)
158 4gcn_A Protein STI-1; structur 99.1 1.3E-09 4.6E-14 95.0 13.0 97 462-578 9-112 (127)
159 2dba_A Smooth muscle cell asso 99.1 1.6E-09 5.6E-14 97.2 13.9 118 421-559 26-143 (148)
160 1na0_A Designed protein CTPR3; 99.1 5.2E-09 1.8E-13 90.5 16.5 117 515-638 9-125 (125)
161 3q49_B STIP1 homology and U bo 99.1 1.6E-09 5.5E-14 95.9 13.3 97 462-578 10-106 (137)
162 1kt0_A FKBP51, 51 kDa FK506-bi 99.1 1.8E-10 6.1E-15 125.1 8.3 147 397-569 248-405 (457)
163 2hr2_A Hypothetical protein; a 99.1 1.2E-09 3.9E-14 96.9 11.8 111 423-553 11-140 (159)
164 2hr2_A Hypothetical protein; a 99.1 6.7E-10 2.3E-14 98.5 10.2 115 461-585 11-136 (159)
165 3rkv_A Putative peptidylprolyl 99.0 1.2E-09 4.2E-14 100.1 12.2 114 422-585 10-131 (162)
166 2dba_A Smooth muscle cell asso 99.0 7E-09 2.4E-13 93.0 16.6 109 462-592 29-140 (148)
167 1elr_A TPR2A-domain of HOP; HO 99.0 2.3E-09 8E-14 93.7 13.0 117 422-563 3-126 (131)
168 3u3w_A Transcriptional activat 99.0 5.8E-09 2E-13 106.1 17.7 138 427-578 79-225 (293)
169 4h7y_A Dual specificity protei 99.0 2.4E-09 8.1E-14 90.9 11.8 110 378-492 6-125 (161)
170 3u3w_A Transcriptional activat 99.0 5.6E-09 1.9E-13 106.3 17.3 170 396-579 88-267 (293)
171 4h7y_A Dual specificity protei 99.0 6.7E-09 2.3E-13 88.1 14.1 115 21-146 7-136 (161)
172 3rkv_A Putative peptidylprolyl 99.0 5.8E-09 2E-13 95.5 14.5 136 461-639 11-147 (162)
173 1kt0_A FKBP51, 51 kDa FK506-bi 99.0 4.1E-10 1.4E-14 122.3 7.8 133 513-652 266-414 (457)
174 2kck_A TPR repeat; tetratricop 99.0 2.1E-09 7.1E-14 91.1 10.7 62 516-577 41-105 (112)
175 3gw4_A Uncharacterized protein 99.0 1.7E-08 5.9E-13 96.0 17.8 161 472-655 3-178 (203)
176 1wao_1 Serine/threonine protei 99.0 2.5E-10 8.7E-15 124.4 5.0 126 424-573 7-134 (477)
177 2xev_A YBGF; tetratricopeptide 99.0 1.5E-08 5E-13 88.6 15.4 106 427-553 6-114 (129)
178 2kck_A TPR repeat; tetratricop 99.0 4.4E-09 1.5E-13 89.0 11.6 109 55-172 1-110 (112)
179 3gw4_A Uncharacterized protein 98.9 1.7E-08 5.8E-13 96.1 15.9 158 435-619 4-178 (203)
180 1zu2_A Mitochondrial import re 98.9 2.8E-09 9.5E-14 94.2 9.1 95 472-588 13-128 (158)
181 1ihg_A Cyclophilin 40; ppiase 98.9 9.8E-09 3.3E-13 107.7 15.0 126 423-568 223-360 (370)
182 2if4_A ATFKBP42; FKBP-like, al 98.9 1.1E-09 3.7E-14 113.8 7.5 155 422-621 178-332 (338)
183 3k9i_A BH0479 protein; putativ 98.9 2.4E-09 8.4E-14 91.9 8.3 93 474-588 3-98 (117)
184 2xev_A YBGF; tetratricopeptide 98.9 2.2E-08 7.4E-13 87.4 14.6 98 518-620 5-108 (129)
185 2if4_A ATFKBP42; FKBP-like, al 98.9 1.8E-09 6.1E-14 112.1 8.9 155 513-693 177-331 (338)
186 3k9i_A BH0479 protein; putativ 98.9 3.5E-09 1.2E-13 90.9 8.8 100 527-633 2-104 (117)
187 3ro3_A PINS homolog, G-protein 98.9 2.8E-08 9.7E-13 90.3 15.2 143 423-579 9-159 (164)
188 1wao_1 Serine/threonine protei 98.9 1E-09 3.4E-14 119.7 5.4 136 515-657 6-154 (477)
189 1zu2_A Mitochondrial import re 98.9 5.4E-09 1.9E-13 92.4 8.6 92 435-550 14-126 (158)
190 1elr_A TPR2A-domain of HOP; HO 98.9 4.1E-08 1.4E-12 85.6 14.2 97 462-578 5-108 (131)
191 4g26_A Pentatricopeptide repea 98.8 3.6E-07 1.2E-11 99.6 24.1 185 552-744 29-221 (501)
192 4b4t_Q 26S proteasome regulato 98.8 2.1E-07 7.2E-12 100.4 22.1 204 521-726 10-245 (434)
193 4b4t_Q 26S proteasome regulato 98.8 9.9E-08 3.4E-12 103.1 18.1 214 425-655 6-247 (434)
194 1ihg_A Cyclophilin 40; ppiase 98.8 4.9E-08 1.7E-12 102.4 15.1 124 514-644 222-361 (370)
195 2kat_A Uncharacterized protein 98.7 6.9E-08 2.3E-12 82.3 9.8 85 43-135 2-86 (115)
196 3ro3_A PINS homolog, G-protein 98.7 2.7E-07 9.4E-12 83.6 14.3 146 461-655 9-160 (164)
197 4g26_A Pentatricopeptide repea 98.7 1.9E-06 6.4E-11 93.9 23.2 168 600-772 38-214 (501)
198 2kat_A Uncharacterized protein 98.7 1.6E-07 5.4E-12 80.0 11.7 47 442-492 4-50 (115)
199 2l6j_A TPR repeat-containing p 98.5 6.3E-08 2.2E-12 81.7 5.3 66 423-492 4-69 (111)
200 3ly7_A Transcriptional activat 98.5 1.5E-06 5.1E-11 88.0 15.5 157 13-173 180-344 (372)
201 1na3_A Designed protein CTPR2; 98.5 7.9E-07 2.7E-11 71.7 11.3 78 514-593 8-85 (91)
202 2l6j_A TPR repeat-containing p 98.5 8.7E-08 3E-12 80.9 5.5 63 516-578 5-67 (111)
203 3u64_A Protein TP_0956; tetrat 98.5 4.1E-06 1.4E-10 81.1 17.3 97 564-664 178-281 (301)
204 3ma5_A Tetratricopeptide repea 98.5 4.1E-07 1.4E-11 75.2 9.0 73 55-135 2-74 (100)
205 1na3_A Designed protein CTPR2; 98.5 9.6E-07 3.3E-11 71.1 10.2 85 421-529 7-91 (91)
206 3ma5_A Tetratricopeptide repea 98.4 8.4E-07 2.9E-11 73.2 8.9 66 513-578 5-70 (100)
207 3u64_A Protein TP_0956; tetrat 98.4 1.8E-05 6.2E-10 76.6 18.7 180 532-730 49-272 (301)
208 2kc7_A BFR218_protein; tetratr 98.4 5.4E-07 1.8E-11 74.2 7.2 89 520-621 5-94 (99)
209 2kc7_A BFR218_protein; tetratr 98.3 9.6E-07 3.3E-11 72.6 6.7 86 465-578 4-90 (99)
210 3ly7_A Transcriptional activat 98.2 1.5E-05 5.3E-10 80.7 15.1 122 530-657 214-343 (372)
211 3bee_A Putative YFRE protein; 98.2 1.9E-05 6.5E-10 63.6 12.3 77 581-659 2-78 (93)
212 3bee_A Putative YFRE protein; 98.2 7.5E-06 2.6E-10 66.0 9.7 74 56-134 2-75 (93)
213 3n71_A Histone lysine methyltr 98.2 1.7E-05 5.7E-10 85.6 15.4 138 428-578 314-464 (490)
214 1klx_A Cysteine rich protein B 98.2 3.1E-05 1.1E-09 68.0 13.8 109 438-578 10-126 (138)
215 1klx_A Cysteine rich protein B 98.2 2.7E-05 9.2E-10 68.4 13.2 120 397-556 9-136 (138)
216 3n71_A Histone lysine methyltr 98.1 1.8E-05 6.2E-10 85.3 13.8 128 522-652 316-463 (490)
217 1pc2_A Mitochondria fission pr 97.7 0.00039 1.3E-08 60.5 12.2 94 439-555 14-111 (152)
218 1pc2_A Mitochondria fission pr 97.7 0.00023 7.9E-09 62.0 10.4 87 604-695 14-105 (152)
219 2v5f_A Prolyl 4-hydroxylase su 97.5 0.00074 2.5E-08 55.6 10.3 75 514-590 4-85 (104)
220 2v5f_A Prolyl 4-hydroxylase su 97.4 0.0015 5E-08 53.8 11.3 82 462-556 6-87 (104)
221 3qww_A SET and MYND domain-con 97.4 0.0018 6.2E-08 68.5 14.7 105 434-551 309-423 (433)
222 3qww_A SET and MYND domain-con 97.4 0.00051 1.7E-08 72.8 9.9 94 473-578 310-411 (433)
223 3qwp_A SET and MYND domain-con 97.1 0.0079 2.7E-07 63.7 16.1 106 433-551 297-412 (429)
224 3qwp_A SET and MYND domain-con 97.1 0.0013 4.4E-08 69.8 10.0 95 472-578 298-400 (429)
225 3esl_A Checkpoint serine/threo 97.1 0.043 1.5E-06 49.8 18.0 121 531-655 8-146 (202)
226 4a1g_A Mitotic checkpoint seri 96.9 0.02 6.7E-07 49.6 13.2 47 679-726 84-130 (152)
227 1nzn_A CGI-135 protein, fissio 96.8 0.0099 3.4E-07 49.7 10.1 89 604-697 17-110 (126)
228 1nzn_A CGI-135 protein, fissio 96.7 0.035 1.2E-06 46.4 13.2 96 438-556 16-115 (126)
229 3esl_A Checkpoint serine/threo 96.5 0.15 5E-06 46.3 16.6 138 604-745 8-162 (202)
230 4a1g_A Mitotic checkpoint seri 96.4 0.11 3.6E-06 45.1 14.1 120 566-689 7-130 (152)
231 2wvi_A Mitotic checkpoint seri 96.3 0.082 2.8E-06 46.5 13.3 66 679-746 79-144 (164)
232 3spa_A Mtrpol, DNA-directed RN 96.1 0.09 3.1E-06 60.1 15.7 112 624-739 127-242 (1134)
233 2wvi_A Mitotic checkpoint seri 95.9 0.28 9.7E-06 43.0 14.8 117 570-693 4-128 (164)
234 4aez_C MAD3, mitotic spindle c 95.9 0.17 5.8E-06 46.8 13.8 34 585-618 72-107 (223)
235 3txn_A 26S proteasome regulato 95.8 0.63 2.2E-05 47.9 19.3 100 627-726 102-210 (394)
236 4aez_C MAD3, mitotic spindle c 95.8 0.27 9.1E-06 45.5 14.6 134 604-744 51-196 (223)
237 1y8m_A FIS1; mitochondria, unk 94.9 0.45 1.5E-05 40.4 12.1 55 605-660 59-113 (144)
238 3spa_A Mtrpol, DNA-directed RN 94.8 0.078 2.7E-06 60.6 9.6 104 583-693 125-234 (1134)
239 3o48_A Mitochondria fission 1 94.7 0.23 7.9E-06 41.6 9.8 72 623-697 39-114 (134)
240 3o48_A Mitochondria fission 1 94.6 0.15 5.2E-06 42.6 8.3 83 585-668 40-122 (134)
241 1y8m_A FIS1; mitochondria, unk 94.4 0.3 1E-05 41.5 10.0 76 623-701 38-117 (144)
242 3ffl_A Anaphase-promoting comp 94.3 0.35 1.2E-05 42.3 10.4 63 427-489 24-91 (167)
243 4gns_B Protein CSD3, chitin bi 94.3 0.33 1.1E-05 54.5 13.0 134 427-575 252-397 (754)
244 3ffl_A Anaphase-promoting comp 94.2 0.31 1.1E-05 42.6 9.8 69 465-544 24-92 (167)
245 3txn_A 26S proteasome regulato 93.4 8 0.00027 39.7 26.7 180 462-656 20-213 (394)
246 4b4t_P 26S proteasome regulato 92.5 4.8 0.00017 42.4 18.0 175 461-655 137-326 (445)
247 3mkq_B Coatomer subunit alpha; 92.5 2.3 7.7E-05 37.9 12.8 102 524-650 14-115 (177)
248 4gns_B Protein CSD3, chitin bi 92.3 0.93 3.2E-05 50.8 12.6 57 664-723 341-397 (754)
249 3mkq_A Coatomer beta'-subunit; 91.7 5 0.00017 46.2 18.8 75 427-541 633-707 (814)
250 3mkq_B Coatomer subunit alpha; 91.2 5.1 0.00018 35.6 13.7 126 472-650 16-141 (177)
251 3mkq_A Coatomer beta'-subunit; 91.1 7.7 0.00026 44.6 19.6 97 82-196 666-762 (814)
252 1zbp_A Hypothetical protein VP 90.0 3.5 0.00012 39.3 12.2 58 472-549 8-65 (273)
253 2ff4_A Probable regulatory pro 89.4 11 0.00037 38.9 16.7 88 517-620 173-260 (388)
254 4b4t_P 26S proteasome regulato 89.3 23 0.0008 37.1 20.7 194 529-726 30-247 (445)
255 1zbp_A Hypothetical protein VP 86.5 15 0.00051 35.0 13.9 120 526-657 8-133 (273)
256 4b4t_R RPN7, 26S proteasome re 86.1 6.2 0.00021 41.4 12.6 101 626-726 133-237 (429)
257 4fhn_B Nucleoporin NUP120; pro 82.8 33 0.0011 41.1 18.5 53 522-578 819-871 (1139)
258 2ff4_A Probable regulatory pro 82.4 13 0.00043 38.4 12.9 63 462-544 172-234 (388)
259 4b4t_S RPN3, 26S proteasome re 80.7 16 0.00056 38.6 12.8 127 527-658 148-304 (523)
260 4b4t_R RPN7, 26S proteasome re 80.5 17 0.00058 38.0 13.2 105 516-620 132-240 (429)
261 1ya0_A SMG-7 transcript varian 76.4 12 0.0004 39.9 10.4 76 516-593 153-228 (497)
262 1ya0_A SMG-7 transcript varian 76.2 12 0.0004 39.9 10.3 80 462-561 153-232 (497)
263 3kae_A CDC27, possible protein 74.8 43 0.0015 29.2 20.5 179 519-730 37-240 (242)
264 4fhn_B Nucleoporin NUP120; pro 74.3 27 0.00091 41.9 14.0 106 421-541 840-964 (1139)
265 4b4t_S RPN3, 26S proteasome re 72.5 21 0.00073 37.7 10.9 62 662-726 233-299 (523)
266 2wpv_A GET4, UPF0363 protein Y 65.6 1.1E+02 0.0036 30.1 14.4 26 513-538 132-157 (312)
267 1wy6_A Hypothetical protein ST 59.2 80 0.0027 26.6 10.9 81 436-544 74-154 (172)
268 1qsa_A Protein (soluble lytic 59.1 2.1E+02 0.0071 31.3 29.5 71 378-458 62-137 (618)
269 1wy6_A Hypothetical protein ST 54.6 97 0.0033 26.1 15.2 138 430-578 14-154 (172)
270 4ady_A RPN2, 26S proteasome re 50.6 3.4E+02 0.012 31.2 24.2 266 389-688 380-657 (963)
271 3lpz_A GET4 (YOR164C homolog); 39.8 2.9E+02 0.0099 27.3 22.8 236 332-635 12-293 (336)
272 3ax2_A Mitochondrial import re 38.7 59 0.002 23.9 5.1 37 253-289 21-57 (73)
273 4ady_A RPN2, 26S proteasome re 37.6 5.3E+02 0.018 29.7 23.7 26 252-277 233-258 (963)
274 2ijq_A Hypothetical protein; s 36.3 1.6E+02 0.0054 25.6 8.3 59 430-489 39-103 (161)
275 3kae_A CDC27, possible protein 34.5 2.4E+02 0.008 24.7 21.3 28 551-578 116-143 (242)
276 2w2u_A Hypothetical P60 katani 32.6 61 0.0021 24.5 4.6 17 709-725 31-47 (83)
277 4gq2_M Nucleoporin NUP120; bet 32.4 3.3E+02 0.011 31.6 13.1 122 602-747 824-950 (950)
278 4gq2_M Nucleoporin NUP120; bet 31.2 3.7E+02 0.013 31.2 13.2 113 521-656 816-929 (950)
279 2v6y_A AAA family ATPase, P60 31.0 66 0.0023 24.2 4.6 17 709-725 23-39 (83)
280 3lvg_A Clathrin heavy chain 1; 30.2 49 0.0017 34.8 4.7 283 420-756 196-519 (624)
281 3ax2_A Mitochondrial import re 27.9 1.3E+02 0.0044 22.0 5.4 31 427-457 21-51 (73)
282 1om2_A Protein (mitochondrial 27.6 89 0.003 24.3 4.7 34 253-286 24-57 (95)
283 2w2u_A Hypothetical P60 katani 27.1 2E+02 0.0068 21.6 7.6 19 560-578 30-48 (83)
284 1qsa_A Protein (soluble lytic 26.5 6.5E+02 0.022 27.3 39.1 206 397-648 228-437 (618)
285 2cqq_A RSGI RUH-037, DNAJ homo 24.7 1.6E+02 0.0055 21.4 5.5 41 88-130 16-57 (72)
286 2v6y_A AAA family ATPase, P60 24.4 2.2E+02 0.0077 21.3 7.6 19 560-578 22-40 (83)
287 3mv2_A Coatomer subunit alpha; 23.3 5.1E+02 0.018 25.3 10.3 28 629-656 212-239 (325)
288 4b4t_O 26S proteasome regulato 22.6 2.7E+02 0.0091 28.3 8.9 58 698-755 128-191 (393)
289 2rpa_A Katanin P60 ATPase-cont 22.2 74 0.0025 23.7 3.2 25 253-277 16-40 (78)
290 2wpv_A GET4, UPF0363 protein Y 22.1 5.5E+02 0.019 25.0 19.2 62 696-758 133-213 (312)
291 3bu8_A Telomeric repeat-bindin 22.1 3.7E+02 0.013 24.5 8.2 109 39-150 32-160 (235)
292 2ijq_A Hypothetical protein; s 21.6 3.9E+02 0.013 23.0 8.3 57 633-689 41-104 (161)
293 1wfd_A Hypothetical protein 15 20.2 1.3E+02 0.0046 23.1 4.6 13 677-689 13-25 (93)
No 1
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=100.00 E-value=7.7e-35 Score=326.45 Aligned_cols=147 Identities=23% Similarity=0.479 Sum_probs=123.1
Q ss_pred HhHHHHhhCCCChHhHHHHHHHHHcCChhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHH
Q 003918 15 LYEEELLRNPFSLKLWWRYLVAKREAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERA 94 (786)
Q Consensus 15 ~~~~~l~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 94 (786)
.|+++|..||.+.++|..++.....+++++++.+|+++++.+|.+..+|..|+.++... |++++|+.+|++|
T Consensus 1 ~le~al~~~P~~~~~w~~l~~~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~--------~~~~~a~~~~~ra 72 (530)
T 2ooe_A 1 MAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKA--------KNYDKVEKLFQRC 72 (530)
T ss_dssp CHHHHHHHCTTCHHHHHHHHHHHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT--------TCHHHHHHHHHHH
T ss_pred ChhhHhhhCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHH
Confidence 37899999999999999999987788999999999999999999999999999999876 8999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHc-CCcHHHHH----HHHHHHHhhCCCC-cchhhHHHHHHHHHh---------cCCChHHHH
Q 003918 95 LVTMHKMPRIWIMYLETLTS-QKFITKAR----RTFDRALCALPVT-QHDRIWEIYLRFVEQ---------EGIPIETSL 159 (786)
Q Consensus 95 l~~~p~~~~~w~~~~~~~~~-~~~~~~A~----~~~~~al~~~p~~-~~~~~w~~~~~~~~~---------~~~~~~~A~ 159 (786)
+..+| ++.+|..|+.+... .++++.|+ .+|++++...+.+ .+..+|..++.++.. .|+. +.|+
T Consensus 73 l~~~p-~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~-~~a~ 150 (530)
T 2ooe_A 73 LMKVL-HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRI-TAVR 150 (530)
T ss_dssp TTTCC-CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHH-HHHH
T ss_pred HhcCC-ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHH-HHHH
Confidence 99999 78999999987764 46666555 4899998865432 247899999998865 4556 7777
Q ss_pred HHHHHHHccCCCC
Q 003918 160 RVYRRYLKYDPSH 172 (786)
Q Consensus 160 ~~~~~~l~~~p~~ 172 (786)
.+|+++++ .|.+
T Consensus 151 ~~y~~al~-~P~~ 162 (530)
T 2ooe_A 151 RVYQRGCV-NPMI 162 (530)
T ss_dssp HHHHHHTT-SCCT
T ss_pred HHHHHHHh-chhh
Confidence 77777777 5653
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.6e-34 Score=329.60 Aligned_cols=481 Identities=8% Similarity=-0.038 Sum_probs=361.3
Q ss_pred CCHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhCCCCcc
Q 003918 58 GSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQH 137 (786)
Q Consensus 58 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 137 (786)
.++..|...+...... |++++|..+|++++...|+ +..|..++..+...|+++.|...|++++.. |. +
T Consensus 82 ~~~~~~~~~~~~~~~~--------g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~--~ 149 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQ--------QQYKCAAFVGEKVLDITGN-PNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NR--S 149 (597)
T ss_dssp CHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GT--C
T ss_pred HHHHHHHHHHHHHHHc--------cCchHHHHHHHHHHhhCCC-chHHHHHHHHHHHcCcHHHHHHHHHHHhcc-cc--c
Confidence 3566777777766654 7777777777777777773 356677777777777777777777777654 32 2
Q ss_pred hhhHHHHHHHHHhcCCChHHHHHHHHHHHccCCCC-------------------H---HHHHHHHHhcCCHHHHHHHHHH
Q 003918 138 DRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSH-------------------I---EDFIEFLVKSKLWQEAAERLAS 195 (786)
Q Consensus 138 ~~~w~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~-------------------~---~~~~~~~~~~g~~~~A~~~~~~ 195 (786)
...|..++.++.+.|++ ++|+.+|++. .|.. . ..++..+.+.|++++|++.|++
T Consensus 150 ~~~~~~l~~~~~~~g~~-~~A~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 225 (597)
T 2xpi_A 150 SACRYLAAFCLVKLYDW-QGALNLLGET---NPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKE 225 (597)
T ss_dssp HHHHHHHHHHHHHTTCH-HHHHHHHCSS---CTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhH-HHHHHHHhcc---CCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 56677777777777777 7777777753 3333 2 3344667778888888888887
Q ss_pred HhcCCCccccCCCcchHHHHHHHHHHhcccccccCCcHHHHHHhhhhccCchhHHHHHHHHHHHHhhccHHHH--HHH-H
Q 003918 196 VLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKA--RDI-F 272 (786)
Q Consensus 196 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~y~~~g~~~~A--~~~-~ 272 (786)
++.. .|.....|..+....... +..+.+ ..+ +
T Consensus 226 ~~~~-------~p~~~~~~~~l~~~~~~~--------------------------------------~~~~~~~~~~l~~ 260 (597)
T 2xpi_A 226 ALMV-------DAKCYEAFDQLVSNHLLT--------------------------------------ADEEWDLVLKLNY 260 (597)
T ss_dssp HHHH-------CTTCHHHHHHHHHTTCSC--------------------------------------HHHHHHHHHHSCT
T ss_pred HHHh-------CchhhHHHHHHHHhhccc--------------------------------------chhHHHHHHhcCC
Confidence 7742 233333444333222111 111000 001 2
Q ss_pred HHHhhccCchhcHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhHhcccccCcc
Q 003918 273 EEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDV 352 (786)
Q Consensus 273 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (786)
.+.....+... ..+
T Consensus 261 ~~~~~~~~~~~--~~~---------------------------------------------------------------- 274 (597)
T 2xpi_A 261 STYSKEDAAFL--RSL---------------------------------------------------------------- 274 (597)
T ss_dssp HHHHGGGHHHH--HHH----------------------------------------------------------------
T ss_pred cccccchHHHH--HHH----------------------------------------------------------------
Confidence 22221111000 000
Q ss_pred chHHHHHHHHHhhhhhchhhhhhhhhhcCCCCHHHHHHHHHhh--cCCchhHHHHHHHHHhccCCCccCCCcHHHHHHHH
Q 003918 353 KDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFA 430 (786)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~--~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a 430 (786)
|..++..+ .|++++|+.+|++++.. | .++..|..++
T Consensus 275 -----------------------------------~~~~~~~~~~~g~~~~A~~~~~~~~~~--~-----~~~~~~~~l~ 312 (597)
T 2xpi_A 275 -----------------------------------YMLKLNKTSHEDELRRAEDYLSSINGL--E-----KSSDLLLCKA 312 (597)
T ss_dssp -----------------------------------HHTTSCTTTTHHHHHHHHHHHHTSTTG--G-----GCHHHHHHHH
T ss_pred -----------------------------------HHHHHHHHcCcchHHHHHHHHHHhhcC--C-----chHHHHHHHH
Confidence 00000011 14567788888887742 2 4688999999
Q ss_pred HHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHH
Q 003918 431 KLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMK 510 (786)
Q Consensus 431 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 510 (786)
..+.+.|++++|+.+|++++..+|++. ..|..++.++.+.|++++|..++++++...|
T Consensus 313 ~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------------------ 370 (597)
T 2xpi_A 313 DTLFVRSRFIDVLAITTKILEIDPYNL----DVYPLHLASLHESGEKNKLYLISNDLVDRHP------------------ 370 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCC----TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT------------------
T ss_pred HHHHHhcCHHHHHHHHHHHHHcCcccH----HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc------------------
Confidence 999999999999999999999999887 7888999999999999999999999998888
Q ss_pred hhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHH
Q 003918 511 LHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVT 590 (786)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~ 590 (786)
++...|..++.++...|++++|+..|+++++..|.++.+|..++.++...|++++|++.|++++.. .|.+..+|..
T Consensus 371 --~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~ 446 (597)
T 2xpi_A 371 --EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL--FQGTHLPYLF 446 (597)
T ss_dssp --TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TTTCSHHHHH
T ss_pred --ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHH
Confidence 678899999999999999999999999999999999999999999999999999999999999987 6888888888
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---Cch--hhHHHH
Q 003918 591 YLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPN---HEK--LGMYEI 665 (786)
Q Consensus 591 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~---~~~--~~~~~~ 665 (786)
++..+.. .|++++|+.+|+++++..|. +..+|..++.++.+.|++++|..+|+++++..|. ++. ...+..
T Consensus 447 l~~~~~~---~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~ 521 (597)
T 2xpi_A 447 LGMQHMQ---LGNILLANEYLQSSYALFQY--DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWAN 521 (597)
T ss_dssp HHHHHHH---HTCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHH
T ss_pred HHHHHHH---cCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHH
Confidence 6655543 37899999999999999998 6789999999999999999999999999988432 333 566777
Q ss_pred HHHHHHHhcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCCCHHHHHHHHHHH
Q 003918 666 YIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFE 743 (786)
Q Consensus 666 ~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~ 743 (786)
++..+.+.|++++|+.+|+++++. .|+ .+.+|..++.++...|++++|..+|+++++. +|+ +...|..+...+
T Consensus 522 l~~~~~~~g~~~~A~~~~~~~~~~-~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~p~-~~~~~~~l~~~~ 594 (597)
T 2xpi_A 522 LGHAYRKLKMYDAAIDALNQGLLL-STN--DANVHTAIALVYLHKKIPGLAITHLHESLAI-SPN-EIMASDLLKRAL 594 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-SSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT-CHHHHHHHHHTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHh-CCC--ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-CCC-ChHHHHHHHHHH
Confidence 777778899999999999999999 787 4679999999999999999999999999997 788 577887776654
No 3
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=100.00 E-value=5.4e-34 Score=319.67 Aligned_cols=493 Identities=13% Similarity=0.201 Sum_probs=354.0
Q ss_pred CCCCcchHhHHHHhhCCCChHhHHHHHHHHH-cCChhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccCCCCCchh---
Q 003918 8 YPSEDDLLYEEELLRNPFSLKLWWRYLVAKR-EAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPE--- 83 (786)
Q Consensus 8 ~~~~~~~~~~~~l~~~p~~~~~w~~~~~~~~-~~~~~~~~~~~~~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~--- 83 (786)
.++++...|++.|..||.|++.|..|++++. .+.++.++.+|+++|..+|.+..+|..|+.++++. ++
T Consensus 47 ~~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~--------~~~~~ 118 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDK--------MEELD 118 (679)
T ss_dssp CCSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC----------CCC
T ss_pred CCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhh--------CCcch
Confidence 4566777899999999999999999999875 67899999999999999999999999999999865 66
Q ss_pred HHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHcCCcH--------HHHHHHHHHHHhhCCC-C-cchhhHHHHHHHHHhc
Q 003918 84 YETLNNTFERALVTMH--KMPRIWIMYLETLTSQKFI--------TKARRTFDRALCALPV-T-QHDRIWEIYLRFVEQE 151 (786)
Q Consensus 84 ~~~A~~~~~~al~~~p--~~~~~w~~~~~~~~~~~~~--------~~A~~~~~~al~~~p~-~-~~~~~w~~~~~~~~~~ 151 (786)
++.++.+|++|+...| .++.+|..|+.+....+++ +..+++|++|+...+. + .+..+|..|+.++...
T Consensus 119 ~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~ 198 (679)
T 4e6h_A 119 AAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHW 198 (679)
T ss_dssp HHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhc
Confidence 9999999999999994 7999999999998865443 4567999999987654 2 2478999999987642
Q ss_pred ---------CCChHHHHHHHHHHHccCCCCHHHHHHHHHhcCCHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHh
Q 003918 152 ---------GIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLT 222 (786)
Q Consensus 152 ---------~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (786)
++. +.++++|+++|. .|... ...+|..+..++.
T Consensus 199 ~~~~~~eeq~~~-~~~R~iy~raL~-iP~~~------------------------------------~~~~w~~Y~~fe~ 240 (679)
T 4e6h_A 199 KPVNKFEEQQRV-QYIRKLYKTLLC-QPMDC------------------------------------LESMWQRYTQWEQ 240 (679)
T ss_dssp CCCSHHHHHHHH-HHHHHHHHHHTT-SCCSS------------------------------------HHHHHHHHHHHHH
T ss_pred cccCcHHHHhHH-HHHHHHHHHHHh-CccHH------------------------------------HHHHHHHHHHHHH
Confidence 234 667777777775 45432 2235666655554
Q ss_pred cccccccCCcHHHHHHhhhhccCchhHHHHHHHHHHHHhhccHHHHHHHHHHHhhccCchhcHHHHHHHHHHHHHHHHHH
Q 003918 223 THATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSA 302 (786)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 302 (786)
..+.. .+...+. ....+|+.|+..|.+.-.....
T Consensus 241 ~~~~~----~a~~~~~---------------------e~~~~y~~Ar~~~~e~~~~~~~--------------------- 274 (679)
T 4e6h_A 241 DVNQL----TARRHIG---------------------ELSAQYMNARSLYQDWLNITKG--------------------- 274 (679)
T ss_dssp HHCTT----THHHHHH---------------------HHHHHHHHHHHHHHHHHHHTTT---------------------
T ss_pred hcCcc----hHHHHHH---------------------HhhHHHHHHHHHHHHHHHHHHh---------------------
Confidence 32110 1111110 1122444555554331110000
Q ss_pred HhcC-CCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhHhcccccCccchHHHHHHHHHhhhhhchhhhhhhhhhcC
Q 003918 303 KMAK-PDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQN 381 (786)
Q Consensus 303 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 381 (786)
+.. +....... .. ..++... ...
T Consensus 275 -l~r~~p~~~~~~-------------~~-----------------~~~p~~~-------------------------~~~ 298 (679)
T 4e6h_A 275 -LKRNLPITLNQA-------------TE-----------------SNLPKPN-------------------------EYD 298 (679)
T ss_dssp -CCCCCCSSSTTC-------------CT-----------------TTSCCTT-------------------------CCC
T ss_pred -Hhhccccccccc-------------hh-----------------ccCCCCc-------------------------hhH
Confidence 000 00000000 00 0000000 000
Q ss_pred CCCHHHHHHHHHhhcCCc---------hhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHH-HHHHHHHh
Q 003918 382 PHNVEQWHRRVKIFEGNP---------TKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANAR-VIFDKAVQ 451 (786)
Q Consensus 382 p~~~~~~~~~~~~~~~~~---------~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~-~~~~~al~ 451 (786)
......|..++.+...+. +.+..+|+++|.. .| .++.+|+.+|.++...|+.++|+ ++|++++.
T Consensus 299 ~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p-----~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~ 372 (679)
T 4e6h_A 299 VQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VC-----FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQ 372 (679)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TT-----TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cC-----CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 011345666666655332 3456789999954 44 68999999999999999999997 99999999
Q ss_pred ccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhh-ccCC-hhHHHHhhhcHHHHHHHHHHHHHcC
Q 003918 452 VNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVA-ADGN-EPVQMKLHKSLRLWTFYVDLEESLG 529 (786)
Q Consensus 452 ~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g 529 (786)
.+|.+. .+|+.++.++.+.|++++|+.+|++++...+..+..... .... ..+.........+|..++.++.+.|
T Consensus 373 ~~P~s~----~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~ 448 (679)
T 4e6h_A 373 CIPNSA----VLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQ 448 (679)
T ss_dssp HCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcC
Confidence 999887 899999999999999999999999999753211100000 0000 0000001124568999999999999
Q ss_pred ChHHHHHHHHHHHhh-ccCCHHHHHHHHHHHHHccc-HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHH
Q 003918 530 NLESTRAVYERILDL-RIATPQIIINYALLLEEHKY-FEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERA 607 (786)
Q Consensus 530 ~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A 607 (786)
+.+.|+.+|.+|++. .+....+|...+.++.+.|+ ++.|.++|+++++. .|+++.+|..|+.+.... |+.+.|
T Consensus 449 ~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~---~~~~~A 523 (679)
T 4e6h_A 449 GLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYV---NEESQV 523 (679)
T ss_dssp CHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHH---TCHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhC---CCHHHH
Confidence 999999999999998 55567899999999888765 89999999999998 588999999999866533 789999
Q ss_pred HHHHHHHHhhCCc-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHH
Q 003918 608 RELFENAVETAPA-DAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMY 663 (786)
Q Consensus 608 ~~~~~~al~~~p~-~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 663 (786)
|.+|++++...|+ +....+|..+..++.+.|+.+.+.++++++.+.+|+++.+.++
T Consensus 524 R~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~f 580 (679)
T 4e6h_A 524 KSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEF 580 (679)
T ss_dssp HHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 9999999999883 1257899999999999999999999999999999988766555
No 4
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=100.00 E-value=2.3e-33 Score=314.47 Aligned_cols=452 Identities=15% Similarity=0.263 Sum_probs=345.2
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 003918 48 IYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDR 127 (786)
Q Consensus 48 ~~~~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~~~A~~~~~~ 127 (786)
+|+++++.+|.+..+|..++.. ... |++++|+.+|+++++.+|.++.+|..++.++.+.|+++.|+.+|++
T Consensus 1 ~le~al~~~P~~~~~w~~l~~~-~~~--------~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~r 71 (530)
T 2ooe_A 1 MAEKKLEENPYDLDAWSILIRE-AQN--------QPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQR 71 (530)
T ss_dssp CHHHHHHHCTTCHHHHHHHHHH-HHS--------SCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ChhhHhhhCCCCHHHHHHHHHH-HHh--------CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3789999999999999999996 433 8999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCcchhhHHHHHHHHH-hcCCChHHHHH----HHHHHHccCCCCHHHHHHHHHhcCCHHHHHHHHHHHhcCCCc
Q 003918 128 ALCALPVTQHDRIWEIYLRFVE-QEGIPIETSLR----VYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQF 202 (786)
Q Consensus 128 al~~~p~~~~~~~w~~~~~~~~-~~~~~~~~A~~----~~~~~l~~~p~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~ 202 (786)
|+..+|. ..+|..++.+.. ..|+. +.|++ +|++++...+.
T Consensus 72 al~~~p~---~~lw~~~~~~~~~~~~~~-~~a~~~~~~~~~~al~~~g~------------------------------- 116 (530)
T 2ooe_A 72 CLMKVLH---IDLWKCYLSYVRETKGKL-PSYKEKMAQAYDFALDKIGM------------------------------- 116 (530)
T ss_dssp HTTTCCC---HHHHHHHHHHHHHHTTTS-TTHHHHHHHHHHHHHHHTTT-------------------------------
T ss_pred HHhcCCC---hHHHHHHHHHHHHHccch-hhHHHHHHHHHHHHHHHCCC-------------------------------
Confidence 9999993 579999997664 45777 77665 66665553222
Q ss_pred cccCCCcchHHHHHHHHHHhcccccccCCcHHHHHHhhhhccCchhHHHHHHHHHHHHhhccHHHHHHHHHHHhhccCch
Q 003918 203 YSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTV 282 (786)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~p~~ 282 (786)
.+.+..+|..++.++...+.. . . +...|++++|+.+|++++. .|..
T Consensus 117 ----~~~~~~~w~~~~~~~~~~~~~---------------------~-~-------~~~~~~~~~a~~~y~~al~-~P~~ 162 (530)
T 2ooe_A 117 ----EIMSYQIWVDYINFLKGVEAV---------------------G-S-------YAENQRITAVRRVYQRGCV-NPMI 162 (530)
T ss_dssp ----STTCHHHHHHHHHHHHHSCCC---------------------S-S-------TTHHHHHHHHHHHHHHHTT-SCCT
T ss_pred ----CcccHHHHHHHHHHHhcCCCc---------------------c-c-------HHHHhHHHHHHHHHHHHHh-chhh
Confidence 123445777766665432210 0 0 1246789999999999998 5643
Q ss_pred hcHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhHhcccccCccchHHHHHHHH
Q 003918 283 RDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARL 362 (786)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (786)
....+|..|..++..+.... ....
T Consensus 163 -~~~~~~~~~~~~e~~~~~~~------------------------------------------------------~~~~- 186 (530)
T 2ooe_A 163 -NIEQLWRDYNKYEEGINIHL------------------------------------------------------AKKM- 186 (530)
T ss_dssp -THHHHHHHHHHHHHHHCHHH------------------------------------------------------HHHH-
T ss_pred -hHHHHHHHHHHHHHhhchhH------------------------------------------------------HHHH-
Confidence 33568888877765321000 0000
Q ss_pred HhhhhhchhhhhhhhhhcCCCCHHHHHHHHHhhcCCchhHHHHHHH------HHhc----cCCCccC--CCcHHHHHHHH
Q 003918 363 EHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTE------AVRT----VDPMKAV--GKPHTLWVAFA 430 (786)
Q Consensus 363 ~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~------al~~----~~~~~~~--~~~~~~~~~~a 430 (786)
+.. ..+++..|...|.. +++. ++|.... .....+|..+.
T Consensus 187 ---------------l~~--------------~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~ 237 (530)
T 2ooe_A 187 ---------------IED--------------RSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYI 237 (530)
T ss_dssp ---------------HHT--------------THHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHH
T ss_pred ---------------HHH--------------hhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHH
Confidence 000 00112233333332 3321 2331000 01257888888
Q ss_pred HHHHHc----CCh----hHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHh-------ccCHH-------HHHHHHHHHh
Q 003918 431 KLYETY----KDI----ANARVIFDKAVQVNYKTVDHLASIWCEWAEMELR-------HKNFK-------GALELMRRAT 488 (786)
Q Consensus 431 ~~~~~~----~~~----~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~-------~g~~~-------~A~~~~~~al 488 (786)
.+.... ++. ..|+..|++++..+|.++ .+|..++.++.+ .|+++ +|+.+|++++
T Consensus 238 ~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~----~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al 313 (530)
T 2ooe_A 238 QWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHP----DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAI 313 (530)
T ss_dssp HHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHH
Confidence 776543 233 478899999999999998 999999999886 68876 9999999999
Q ss_pred c-CCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCH-HHHHHHHHHHHHcccHH
Q 003918 489 A-EPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATP-QIIINYALLLEEHKYFE 566 (786)
Q Consensus 489 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~g~~~ 566 (786)
. ..| ++..+|..++.++...|++++|+.+|+++++..|.++ .+|..++.++.+.|+++
T Consensus 314 ~~~~p--------------------~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 373 (530)
T 2ooe_A 314 STLLK--------------------KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIK 373 (530)
T ss_dssp TTTCS--------------------SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCc--------------------ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHH
Confidence 7 788 7899999999999999999999999999999999986 69999999999999999
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHH
Q 003918 567 DAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKV 646 (786)
Q Consensus 567 ~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~ 646 (786)
+|+++|+++++. .|.....|...+..... ..|++++|+.+|+++++..|+ +..+|..++.++...|+.++|+.+
T Consensus 374 ~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~--~~~~~~~A~~~~e~al~~~p~--~~~~~~~~~~~~~~~g~~~~Ar~~ 447 (530)
T 2ooe_A 374 SGRMIFKKARED--ARTRHHVYVTAALMEYY--CSKDKSVAFKIFELGLKKYGD--IPEYVLAYIDYLSHLNEDNNTRVL 447 (530)
T ss_dssp HHHHHHHHHHTC--TTCCTHHHHHHHHHHHH--HTCCHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHTTTTCHHHHHHH
T ss_pred HHHHHHHHHHhc--cCCchHHHHHHHHHHHH--HcCChhHHHHHHHHHHHHCCC--CHHHHHHHHHHHHhCCCHhhHHHH
Confidence 999999999996 46555555543322111 248899999999999999998 789999999999999999999999
Q ss_pred HHHHHhcCCCCch--hhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCC
Q 003918 647 YDQATKAVPNHEK--LGMYEIYIARAAEIFGVPKTREIYEQAIESGLPD 693 (786)
Q Consensus 647 ~~~~l~~~p~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~ 693 (786)
|++++...|.++. ..+|..|+.++...|+.+.+..++.++++. .|+
T Consensus 448 ~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~-~p~ 495 (530)
T 2ooe_A 448 FERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA-FRE 495 (530)
T ss_dssp HHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH-THH
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-Cch
Confidence 9999998876543 568888888888889999999999999998 774
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.9e-32 Score=294.53 Aligned_cols=205 Identities=16% Similarity=0.231 Sum_probs=147.1
Q ss_pred CCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccC
Q 003918 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKN 476 (786)
Q Consensus 397 ~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~ 476 (786)
|++++|+..|++++. .+| .++.+|..+|..+...|++++|+..|++++..+|+++ .+|..++.++...|+
T Consensus 183 g~~~~A~~~~~~al~-~~p-----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~g~ 252 (388)
T 1w3b_A 183 GEIWLAIHHFEKAVT-LDP-----NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA----VVHGNLACVYYEQGL 252 (388)
T ss_dssp TCHHHHHHHHHHHHH-HCT-----TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHh-cCC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCH----HHHHHHHHHHHHcCC
Confidence 556666666666663 455 4566777777777777777777777777777777776 677777777777777
Q ss_pred HHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHH
Q 003918 477 FKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYA 556 (786)
Q Consensus 477 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 556 (786)
+++|+..|++++...| +++.+|..++.++...|++++|+..|+++++..|+++.+|..++
T Consensus 253 ~~~A~~~~~~al~~~p--------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 312 (388)
T 1w3b_A 253 IDLAIDTYRRAIELQP--------------------HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLA 312 (388)
T ss_dssp HHHHHHHHHHHHHTCS--------------------SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCC--------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHH
Confidence 7777777777777777 56667777777777777777777777777777777777777777
Q ss_pred HHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHH
Q 003918 557 LLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEED 636 (786)
Q Consensus 557 ~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~ 636 (786)
.++...|++++|+..|+++++. +|++..+|..++..+. ..|++++|+..|+++++..|+ ...++..++.++..
T Consensus 313 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~a~~~~p~--~~~a~~~lg~~~~~ 385 (388)
T 1w3b_A 313 NIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQ---QQGKLQEALMHYKEAIRISPT--FADAYSNMGNTLKE 385 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHH---TTTCCHHHHHHHHHHHTTCTT--CHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhhCCC--CHHHHHhHHHHHHH
Confidence 7777777777777777777775 5777777766554443 456777777777777777776 56677777776665
Q ss_pred cC
Q 003918 637 YG 638 (786)
Q Consensus 637 ~g 638 (786)
.|
T Consensus 386 ~~ 387 (388)
T 1w3b_A 386 MQ 387 (388)
T ss_dssp TC
T ss_pred cc
Confidence 54
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1e-32 Score=314.67 Aligned_cols=496 Identities=10% Similarity=0.020 Sum_probs=387.5
Q ss_pred CCHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHhcCCChHHHHHHHHHHHccCCCCH---HHH
Q 003918 100 KMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHI---EDF 176 (786)
Q Consensus 100 ~~~~~w~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~w~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~ 176 (786)
.++..|...+..+.+.|+++.|..+|++++...|. ...|..++..+...|++ ++|+.+|++++.. |.+. ..+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~-~~~~~~~~~l 156 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGN---PNDAFWLAQVYCCTGDY-ARAKCLLTKEDLY-NRSSACRYLA 156 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHTTCH-HHHHHHHHHTCGG-GTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCC---chHHHHHHHHHHHcCcH-HHHHHHHHHHhcc-ccchhHHHHH
Confidence 56788999999999999999999999999998884 36678889999999999 9999999999764 4444 445
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHhcccccccCCcHHHHHHhhhhccCchhHHHHHHHH
Q 003918 177 IEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLA 256 (786)
Q Consensus 177 ~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la 256 (786)
+..+.+.|++++|++.|+++.... ...... . ..... ....|.+ ...|+.+|
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~~~~----------~~~~~~---~--~~~~~-------------~~~~~~~-~~~~~~l~ 207 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETNPFR----------KDEKNA---N--KLLMQ-------------DGGIKLE-ASMCYLRG 207 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSCTTC-------------------------CC-------------CSSCCHH-HHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHhccCCcc----------cccccc---c--ccccc-------------ccccchh-HHHHHHHH
Confidence 588999999999999998643210 000000 0 00000 0112333 77899999
Q ss_pred HHHHhhccHHHHHHHHHHHhhccCchhcHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhH
Q 003918 257 DYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSM 336 (786)
Q Consensus 257 ~~y~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (786)
..|.+.|++++|+..|++++...|+... .+....... ..
T Consensus 208 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~----------~~---------------------------- 246 (597)
T 2xpi_A 208 QVYTNLSNFDRAKECYKEALMVDAKCYE---AFDQLVSNH----------LL---------------------------- 246 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHH---HHHHHHHTT----------CS----------------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCchhhH---HHHHHHHhh----------cc----------------------------
Confidence 9999999999999999999987765421 111111000 00
Q ss_pred HHHHHhHhcccccCccchHHHHHHHHHhhhhhchhhhhhhhhhcCCCCHHHHHHHHHhhcCCchhHHHH-HHHHHhccCC
Q 003918 337 AEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILT-YTEAVRTVDP 415 (786)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~-~~~al~~~~~ 415 (786)
. .... ...+..+ +..... .++
T Consensus 247 --------------~-~~~~------------------------------------------~~~~~~l~~~~~~~-~~~ 268 (597)
T 2xpi_A 247 --------------T-ADEE------------------------------------------WDLVLKLNYSTYSK-EDA 268 (597)
T ss_dssp --------------C-HHHH------------------------------------------HHHHHHSCTHHHHG-GGH
T ss_pred --------------c-chhH------------------------------------------HHHHHhcCCccccc-chH
Confidence 0 0000 0000000 111111 011
Q ss_pred CccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHH
Q 003918 416 MKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEV 495 (786)
Q Consensus 416 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~ 495 (786)
.....+|..++..+.+.|++++|+.+|++++.. |.++ ..|..++..+.+.|++++|+.+|++++...|
T Consensus 269 ----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--- 336 (597)
T 2xpi_A 269 ----AFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSS----DLLLCKADTLFVRSRFIDVLAITTKILEIDP--- 336 (597)
T ss_dssp ----HHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---
T ss_pred ----HHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchH----HHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc---
Confidence 012234455567778889999999999999987 5565 8999999999999999999999999998888
Q ss_pred hhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 003918 496 RRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERG 575 (786)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 575 (786)
.+...|..++.++...|++++|..+|++++...|+++.+|..++.++.+.|++++|++.|+++
T Consensus 337 -----------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 399 (597)
T 2xpi_A 337 -----------------YNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKS 399 (597)
T ss_dssp -----------------TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----------------ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 677889999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 003918 576 VKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVP 655 (786)
Q Consensus 576 l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p 655 (786)
++. +|.+...|..++..+... |++++|..+|+++++..|+ +..+|..++.++...|++++|..+|+++++..|
T Consensus 400 ~~~--~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 472 (597)
T 2xpi_A 400 STM--DPQFGPAWIGFAHSFAIE---GEHDQAISAYTTAARLFQG--THLPYLFLGMQHMQLGNILLANEYLQSSYALFQ 472 (597)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHTTTT--CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred HHh--CCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCcc--chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 997 699999999877666543 8899999999999999998 568999999999999999999999999999999
Q ss_pred CCchhhHHHHHHHHHHHhcChhHHHHHHHHHHHh----c-CCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCC
Q 003918 656 NHEKLGMYEIYIARAAEIFGVPKTREIYEQAIES----G-LPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPR 730 (786)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~-~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~ 730 (786)
.++. .+..++..+.+.|++++|+++|+++++. + .|.+ ...+|..++.++.+.|++++|..+|+++++. +|+
T Consensus 473 ~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~ 548 (597)
T 2xpi_A 473 YDPL--LLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP-WAATWANLGHAYRKLKMYDAAIDALNQGLLL-STN 548 (597)
T ss_dssp CCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGG-GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-SSC
T ss_pred CChH--HHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhh-HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCC
Confidence 8554 4555666667899999999999999987 1 2221 2679999999999999999999999999997 687
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhhhh
Q 003918 731 SDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASYSQV 769 (786)
Q Consensus 731 ~~~~~~~~~~~~~~~~G~~~~a~~~~~~~~~~~~~~~~~ 769 (786)
+...|..++..+...|+.++|.+.++....+.+.....
T Consensus 549 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 586 (597)
T 2xpi_A 549 -DANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMA 586 (597)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred -ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHH
Confidence 69999999999999999999999996554444433333
No 7
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=2.4e-32 Score=293.65 Aligned_cols=327 Identities=17% Similarity=0.220 Sum_probs=289.4
Q ss_pred hhcCCCCHHHHHHHHHhhc--CCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCC
Q 003918 378 LRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYK 455 (786)
Q Consensus 378 l~~~p~~~~~~~~~~~~~~--~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 455 (786)
++.+|.+..+|..++..+. |++++|+..|++++. .+| +++..|..+|..+...|++++|+..|++++..+|+
T Consensus 60 ~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 133 (388)
T 1w3b_A 60 IKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALR-LKP-----DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD 133 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HCT-----TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT
T ss_pred HhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH-cCc-----chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 4556777777777777764 899999999999994 666 67889999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHH
Q 003918 456 TVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTR 535 (786)
Q Consensus 456 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 535 (786)
+. .++..++.++...|++++|...|++++...| ++...|..++.++...|++++|+
T Consensus 134 ~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--------------------~~~~~~~~l~~~~~~~g~~~~A~ 189 (388)
T 1w3b_A 134 LY----CVRSDLGNLLKALGRLEEAKACYLKAIETQP--------------------NFAVAWSNLGCVFNAQGEIWLAI 189 (388)
T ss_dssp CT----HHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT--------------------TCHHHHHHHHHHHHTTTCHHHHH
T ss_pred cH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--------------------CCHHHHHHHHHHHHHcCCHHHHH
Confidence 88 8899999999999999999999999999988 78899999999999999999999
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 003918 536 AVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAV 615 (786)
Q Consensus 536 ~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 615 (786)
..|+++++.+|+++.+|..+|.++...|++++|+..|++++.. +|++..+|..++..+. ..|++++|+..|++++
T Consensus 190 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~al 264 (388)
T 1w3b_A 190 HHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVHGNLACVYY---EQGLIDLAIDTYRRAI 264 (388)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999997 6988888887665444 3488999999999999
Q ss_pred hhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChh
Q 003918 616 ETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKD 695 (786)
Q Consensus 616 ~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~ 695 (786)
+..|+ +..++..++.++...|++++|+..|+++++..|+++.... .++..+...|++++|+..|+++++. .|+
T Consensus 265 ~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~--~l~~~~~~~g~~~~A~~~~~~al~~-~p~-- 337 (388)
T 1w3b_A 265 ELQPH--FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLN--NLANIKREQGNIEEAVRLYRKALEV-FPE-- 337 (388)
T ss_dssp HTCSS--CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHH--HHHHHHHTTTCHHHHHHHHHHHTTS-CTT--
T ss_pred hhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHH--HHHHHHHHcCCHHHHHHHHHHHHhc-CCC--
Confidence 99998 6789999999999999999999999999999998655444 4444556889999999999999998 887
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHcCC
Q 003918 696 VKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGN 748 (786)
Q Consensus 696 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~G~ 748 (786)
....+..++.++.+.|++++|...|+++++. +|+ ....|..++..+...|+
T Consensus 338 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~p~-~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 338 FAAAHSNLASVLQQQGKLQEALMHYKEAIRI-SPT-FADAYSNMGNTLKEMQD 388 (388)
T ss_dssp CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT-CTT-CHHHHHHHHHHHHHTCC
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCC-CHHHHHhHHHHHHHccC
Confidence 4668999999999999999999999999997 788 68888888888777664
No 8
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=100.00 E-value=3.1e-31 Score=297.31 Aligned_cols=482 Identities=10% Similarity=0.117 Sum_probs=348.4
Q ss_pred hhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCc---H
Q 003918 42 FKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKF---I 118 (786)
Q Consensus 42 ~~~~~~~~~~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~w~~~~~~~~~~~~---~ 118 (786)
..+.+..|++++..+|.|.+.|..|+.++.+. +.++.++.+|++++..+|.++.+|..|+.++...++ +
T Consensus 48 ~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~--------~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~ 119 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSL--------KQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDA 119 (679)
T ss_dssp CSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCH
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhc--------CcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchH
Confidence 45566688999999999999999999998875 789999999999999999999999999999999998 9
Q ss_pred HHHHHHHHHHHhhCCCCcchhhHHHHHHHHHhcCCCh-------HHHHHHHHHHHccCCCCHHHHHHHHHhcCCHHHHHH
Q 003918 119 TKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPI-------ETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAE 191 (786)
Q Consensus 119 ~~A~~~~~~al~~~p~~~~~~~w~~~~~~~~~~~~~~-------~~A~~~~~~~l~~~p~~~~~~~~~~~~~g~~~~A~~ 191 (786)
+.+..+|++|+...|.+.+..+|..|+.+....++.. +..+++|++++.....
T Consensus 120 ~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~-------------------- 179 (679)
T 4e6h_A 120 AVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAI-------------------- 179 (679)
T ss_dssp HHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTT--------------------
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCc--------------------
Confidence 9999999999999942224789999999887766541 2234566666543221
Q ss_pred HHHHHhcCCCccccCCCcchHHHHHHHHHHhcccccccCCcHHHHHHhhhhccCchhHHHHHHHHHHHHhhccHHHHHHH
Q 003918 192 RLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDI 271 (786)
Q Consensus 192 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~y~~~g~~~~A~~~ 271 (786)
..+.+..+|..++.++...+.. . - +..+++++.++++
T Consensus 180 --------------~d~~s~~iW~~Yi~f~~~~~~~---------------------~-~-------~eeq~~~~~~R~i 216 (679)
T 4e6h_A 180 --------------FEPKSIQFWNEYLHFLEHWKPV---------------------N-K-------FEEQQRVQYIRKL 216 (679)
T ss_dssp --------------TCSSCHHHHHHHHHHHHTCCCC---------------------S-H-------HHHHHHHHHHHHH
T ss_pred --------------ccccchHHHHHHHHHHHhcccc---------------------C-c-------HHHHhHHHHHHHH
Confidence 0123445888888777643211 0 0 1134567899999
Q ss_pred HHHHhhccCchhcHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhHhcccccCc
Q 003918 272 FEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHD 351 (786)
Q Consensus 272 ~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (786)
|++++. .|.. +...+|..|..++..+. ... +. .
T Consensus 217 y~raL~-iP~~-~~~~~w~~Y~~fe~~~~-----~~~------------------------a~--~-------------- 249 (679)
T 4e6h_A 217 YKTLLC-QPMD-CLESMWQRYTQWEQDVN-----QLT------------------------AR--R-------------- 249 (679)
T ss_dssp HHHHTT-SCCS-SHHHHHHHHHHHHHHHC-----TTT------------------------HH--H--------------
T ss_pred HHHHHh-CccH-HHHHHHHHHHHHHHhcC-----cch------------------------HH--H--------------
Confidence 999996 4543 35679999999886420 000 00 0
Q ss_pred cchHHHHHHHHHhhhhhchhhhhhhhhhcCCCCHHHHHHHHHhhcCCchhHHHHHHHH-----HhccCCCc-cCCCcHHH
Q 003918 352 VKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEA-----VRTVDPMK-AVGKPHTL 425 (786)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~a-----l~~~~~~~-~~~~~~~~ 425 (786)
........|..+ + .++....-..+..+.. +... ...+++.+ .......+
T Consensus 250 --~~~e~~~~y~~A---r-----------------~~~~e~~~~~~~l~r~---~p~~~~~~~~~~~p~~~~~~~~ql~l 304 (679)
T 4e6h_A 250 --HIGELSAQYMNA---R-----------------SLYQDWLNITKGLKRN---LPITLNQATESNLPKPNEYDVQQLLI 304 (679)
T ss_dssp --HHHHHHHHHHHH---H-----------------HHHHHHHHHTTTCCCC---CCSSSTTCCTTTSCCTTCCCHHHHHH
T ss_pred --HHHHhhHHHHHH---H-----------------HHHHHHHHHHHhHhhc---cccccccchhccCCCCchhHHHHHHH
Confidence 000000000000 0 0000000000000000 0000 00011100 00123589
Q ss_pred HHHHHHHHHHcC-------ChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHH-HHHHHHhcCCchHHhh
Q 003918 426 WVAFAKLYETYK-------DIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGAL-ELMRRATAEPSVEVRR 497 (786)
Q Consensus 426 ~~~~a~~~~~~~-------~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~-~~~~~al~~~~~~~~~ 497 (786)
|..++.+....+ ..+..+.+|++|+...|.++ .+|+.|+.++...|+.++|+ .+|++++...|
T Consensus 305 W~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~----~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P----- 375 (679)
T 4e6h_A 305 WLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAP----EIWFNMANYQGEKNTDSTVITKYLKLGQQCIP----- 375 (679)
T ss_dssp HHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCH----HHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCT-----
T ss_pred HHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCH----HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCC-----
Confidence 999998877643 13456789999999999987 99999999999999999997 99999999888
Q ss_pred hhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhc-----------cC-----------CHHHHHHH
Q 003918 498 RVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLR-----------IA-----------TPQIIINY 555 (786)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-----------p~-----------~~~~~~~~ 555 (786)
.+..+|..++.++...|++++|+.+|++++... |. .+.+|..+
T Consensus 376 ---------------~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y 440 (679)
T 4e6h_A 376 ---------------NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVY 440 (679)
T ss_dssp ---------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred ---------------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHH
Confidence 788999999999999999999999999999852 42 34589999
Q ss_pred HHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHH
Q 003918 556 ALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEE 635 (786)
Q Consensus 556 ~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~ 635 (786)
+.++.+.|+.+.|.++|.+|++.. .+....+|..++ .+..+ ..++++.|+.+|+++++..|+ +..+|..|+.++.
T Consensus 441 ~~~erR~~~l~~AR~vf~~A~~~~-~~~~~~lyi~~A-~lE~~-~~~d~e~Ar~ife~~Lk~~p~--~~~~w~~y~~fe~ 515 (679)
T 4e6h_A 441 MNTMKRIQGLAASRKIFGKCRRLK-KLVTPDIYLENA-YIEYH-ISKDTKTACKVLELGLKYFAT--DGEYINKYLDFLI 515 (679)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHTG-GGSCTHHHHHHH-HHHHT-TTSCCHHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhc-CCCChHHHHHHH-HHHHH-hCCCHHHHHHHHHHHHHHCCC--chHHHHHHHHHHH
Confidence 999999999999999999999852 123456676544 23322 235589999999999999998 7889999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCC-CchhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChhH
Q 003918 636 DYGLAKRAMKVYDQATKAVPN-HEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDV 696 (786)
Q Consensus 636 ~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~ 696 (786)
..|+.+.|+.+|++++...|+ .....+|..|+.++.+.|+.+.++.+.+++++. .|++..
T Consensus 516 ~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~-~P~~~~ 576 (679)
T 4e6h_A 516 YVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK-FPEVNK 576 (679)
T ss_dssp HHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH-STTCCH
T ss_pred hCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCcH
Confidence 999999999999999998884 345688999999999999999999999999999 887543
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.98 E-value=2.2e-30 Score=291.33 Aligned_cols=452 Identities=13% Similarity=0.102 Sum_probs=330.2
Q ss_pred CHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhCCCCcch
Q 003918 59 SYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHD 138 (786)
Q Consensus 59 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 138 (786)
....|...+...... |++++|...|+++++.+|+++.+|..++..+...|++++|...|++++..+|.+ .
T Consensus 24 ~a~~~~~~g~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~ 93 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTA--------KNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDH--S 93 (537)
T ss_dssp HHHHHHHHHHHHHHT--------TCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--H
T ss_pred HHHHHHHHHHHHHHh--------ccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCch--H
Confidence 467788888888876 999999999999999999999999999999999999999999999999999975 7
Q ss_pred hhHHHHHHHHHhcCCChHHHHHHHHHHHccCCCCHHHHHHHHHhcCCHHHHHHHHHHHhcCCCccccCCCcchHHHHHHH
Q 003918 139 RIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELC 218 (786)
Q Consensus 139 ~~w~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 218 (786)
..|..++.++...|++ ++|+..|+ ++..+|+.....+..+...+...+|+..+++++...+...............+.
T Consensus 94 ~~~~~la~~~~~~g~~-~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 171 (537)
T 3fp2_A 94 KALLRRASANESLGNF-TDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFF 171 (537)
T ss_dssp HHHHHHHHHHHHHTCH-HHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCH-HHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHH
Confidence 8899999999999999 99999996 899999988777777777888899999999998653211111111111111111
Q ss_pred HHHhcccccccCCcHHHHHHhhhhccCchhHHHHHHHHHHHH--------hhccHHHHHHHHHHHhhccCchhcHHHHHH
Q 003918 219 DLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYI--------RRELFEKARDIFEEGMMTVVTVRDFSVIFD 290 (786)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~y~--------~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 290 (786)
. ..... .....+.......+.. ..++..++.++. ..|++++|+..|++++...|+... ++.
T Consensus 172 ~---~~~~~----~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~---~~~ 240 (537)
T 3fp2_A 172 G---IFDSH----LEVSSVNTSSNYDTAY-ALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDP---LRE 240 (537)
T ss_dssp H---TSCHH----HHHHTSCCCCSSCSSH-HHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHH---HHH
T ss_pred H---hcChH----HHHHHHhhccccccHH-HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcch---hhH
Confidence 1 10000 0000011111111111 223344443332 335777777777777776665421 100
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhHhcccccCccchHHHHHHHHHhhhhhch
Q 003918 291 SYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRP 370 (786)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (786)
..
T Consensus 241 ~~------------------------------------------------------------------------------ 242 (537)
T 3fp2_A 241 NA------------------------------------------------------------------------------ 242 (537)
T ss_dssp HH------------------------------------------------------------------------------
T ss_pred HH------------------------------------------------------------------------------
Confidence 00
Q ss_pred hhhhhhhhhcCCCCHHHHHHHHHhh--cCCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHH
Q 003918 371 ELANSVLLRQNPHNVEQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDK 448 (786)
Q Consensus 371 ~~~~~~~l~~~p~~~~~~~~~~~~~--~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 448 (786)
..++..++..+ .|++++|+..|++++. .+| . +..|..+|..+...|++++|+..|++
T Consensus 243 --------------~~~~~~~g~~~~~~~~~~~A~~~~~~~~~-~~~-----~-~~~~~~l~~~~~~~~~~~~A~~~~~~ 301 (537)
T 3fp2_A 243 --------------ALALCYTGIFHFLKNNLLDAQVLLQESIN-LHP-----T-PNSYIFLALTLADKENSQEFFKFFQK 301 (537)
T ss_dssp --------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCC-----C-HHHHHHHHHHTCCSSCCHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHhcccHHHHHHHHHHHHh-cCC-----C-chHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 01122233333 3888999999999995 666 4 78999999999999999999999999
Q ss_pred HHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHc
Q 003918 449 AVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESL 528 (786)
Q Consensus 449 al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (786)
++..+|+++ .+|..++.++...|++++|+..|++++...| .+..+|..++.++...
T Consensus 302 ~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--------------------~~~~~~~~la~~~~~~ 357 (537)
T 3fp2_A 302 AVDLNPEYP----PTYYHRGQMYFILQDYKNAKEDFQKAQSLNP--------------------ENVYPYIQLACLLYKQ 357 (537)
T ss_dssp HHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------TCSHHHHHHHHHHHHT
T ss_pred HhccCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--------------------CCHHHHHHHHHHHHHc
Confidence 999999987 8999999999999999999999999999888 6778899999999999
Q ss_pred CChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHH------HHHHHHHHHHh---
Q 003918 529 GNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIW------VTYLSKFVKRY--- 599 (786)
Q Consensus 529 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~------~~~~~~~~~~~--- 599 (786)
|++++|...|+++++..|+++.++..+|.++...|++++|+..|++++... |.+...| ...+..+....
T Consensus 358 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~a~~~~~~~~~~ 435 (537)
T 3fp2_A 358 GKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE--EVQEKIHVGIGPLIGKATILARQSSQD 435 (537)
T ss_dssp TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHCSSCSSTTHHHHHHHHHHHHHHTC-
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CcchhhHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999999873 4333222 22122222110
Q ss_pred ----CCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchh
Q 003918 600 ----GKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKL 660 (786)
Q Consensus 600 ----~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 660 (786)
..|++++|+..|+++++..|+ +..++..+|.++...|++++|+..|+++++..|..+..
T Consensus 436 ~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 498 (537)
T 3fp2_A 436 PTQLDEEKFNAAIKLLTKACELDPR--SEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEK 498 (537)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHH
T ss_pred chhhhHhHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 117899999999999999998 67899999999999999999999999999999986544
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.4e-29 Score=278.17 Aligned_cols=447 Identities=11% Similarity=0.074 Sum_probs=332.3
Q ss_pred CHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhCCCCcch
Q 003918 59 SYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHD 138 (786)
Q Consensus 59 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 138 (786)
..+.|...+...... |++++|...|+++++.+| ++.+|..++..+...|++++|...|++++..+|.+ .
T Consensus 5 ~a~~~~~~g~~~~~~--------g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~ 73 (514)
T 2gw1_A 5 YALALKDKGNQFFRN--------KKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDY--S 73 (514)
T ss_dssp HHHHHHHHHHHHHHT--------SCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCC--H
T ss_pred hHHHHHHHHHHHHHh--------ccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHH--H
Confidence 356788888888775 999999999999999999 69999999999999999999999999999999975 7
Q ss_pred hhHHHHHHHHHhcCCChHHHHHHHHHHHccCCCCHHH---HHHHHHhcCCHHHHHHHH---HHHhcCCCc----------
Q 003918 139 RIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIED---FIEFLVKSKLWQEAAERL---ASVLNDDQF---------- 202 (786)
Q Consensus 139 ~~w~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~---~~~~~~~~g~~~~A~~~~---~~~l~~~~~---------- 202 (786)
..|..++.++...|++ ++|+..|+++++.+|.+... .+..+........+.+.+ +.....+..
T Consensus 74 ~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 152 (514)
T 2gw1_A 74 KVLLRRASANEGLGKF-ADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERK 152 (514)
T ss_dssp HHHHHHHHHHHHTTCH-HHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-----------------------
T ss_pred HHHHHHHHHHHHHhhH-HHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHH
Confidence 8899999999999999 99999999999999876532 222222211111111111 111100000
Q ss_pred -cccCCCcchHHHHHHHHHHhcccccccCCcHHHHHHhhhhccCchhHHHHHHHHHHHHh---hccHHHHHHHHHHHhhc
Q 003918 203 -YSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIR---RELFEKARDIFEEGMMT 278 (786)
Q Consensus 203 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~y~~---~g~~~~A~~~~~~al~~ 278 (786)
..+..|... ....+ ......... . ..+ ..|.+ +..+...|..+.. .|++++|+..|++++..
T Consensus 153 ~~~~~~~~~~-~~~~~---~~~~~~~~~-~-------~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 218 (514)
T 2gw1_A 153 DKQENLPSVT-SMASF---FGIFKPELT-F-------ANY-DESNE-ADKELMNGLSNLYKRSPESYDKADESFTKAARL 218 (514)
T ss_dssp ----CCCCHH-HHHHH---HTTSCCCCC-C-------SSC-CSSCH-HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHH
T ss_pred hhccCCchhH-HHHHH---HhhcCHHHH-H-------HHh-cCCcH-HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHH
Confidence 000000000 00000 000000000 0 000 11443 7788888888876 89999999999999862
Q ss_pred -------cCchhcHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhHhcccccCc
Q 003918 279 -------VVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHD 351 (786)
Q Consensus 279 -------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (786)
.|+..
T Consensus 219 ~~~~~~~~~~~~-------------------------------------------------------------------- 230 (514)
T 2gw1_A 219 FEEQLDKNNEDE-------------------------------------------------------------------- 230 (514)
T ss_dssp HHHHTTTSTTCH--------------------------------------------------------------------
T ss_pred hhhhhccCcccc--------------------------------------------------------------------
Confidence 22110
Q ss_pred cchHHHHHHHHHhhhhhchhhhhhhhhhcCCCCHHHHHHHHHhhc--CCchhHHHHHHHHHhccCCCccCCCcHHHHHHH
Q 003918 352 VKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAF 429 (786)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~ 429 (786)
..+|.+...|..++..+. |++++|+..|++++. .+| . +.+|..+
T Consensus 231 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~-~~~-----~-~~~~~~l 276 (514)
T 2gw1_A 231 ---------------------------KLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE-LFP-----R-VNSYIYM 276 (514)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH-HCC-----C-HHHHHHH
T ss_pred ---------------------------ccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-hCc-----c-HHHHHHH
Confidence 012333445555555553 888999999999884 555 4 8888999
Q ss_pred HHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHH
Q 003918 430 AKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQM 509 (786)
Q Consensus 430 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 509 (786)
|.++...|++++|+..|++++..+|.++ .+|..++.++...|++++|+..|++++...|
T Consensus 277 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----------------- 335 (514)
T 2gw1_A 277 ALIMADRNDSTEYYNYFDKALKLDSNNS----SVYYHRGQMNFILQNYDQAGKDFDKAKELDP----------------- 335 (514)
T ss_dssp HHHHHTSSCCTTGGGHHHHHHTTCTTCT----HHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS-----------------
T ss_pred HHHHHHCCCHHHHHHHHHHHhhcCcCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh-----------------
Confidence 9999999999999999999999998887 8888899999999999999999999998888
Q ss_pred HhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHH---
Q 003918 510 KLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKD--- 586 (786)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~--- 586 (786)
.+..++..++.++...|++++|+..|+++++..|+++.++..+|.++...|++++|+..|++++.. .|.++.
T Consensus 336 ---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~ 410 (514)
T 2gw1_A 336 ---ENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL--ENKLDGIYV 410 (514)
T ss_dssp ---SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHTSSSCSS
T ss_pred ---hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--hhccchHHH
Confidence 667888888988889999999999999999999999999999999999999999999999999887 355533
Q ss_pred ---HHHHHHHHHHHHhC---CCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchh
Q 003918 587 ---IWVTYLSKFVKRYG---KTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKL 660 (786)
Q Consensus 587 ---~~~~~~~~~~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 660 (786)
+|...+..+. . .|++++|+..|+++++..|+ +..++..+|.++...|++++|...|+++++..|+++..
T Consensus 411 ~~~~~~~l~~~~~---~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 485 (514)
T 2gw1_A 411 GIAPLVGKATLLT---RNPTVENFIEATNLLEKASKLDPR--SEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEK 485 (514)
T ss_dssp CSHHHHHHHHHHH---TSCCTTHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHHHh---hhhhcCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHH
Confidence 6666554443 4 68899999999999999888 67888999999999999999999999999999876555
Q ss_pred hHHH
Q 003918 661 GMYE 664 (786)
Q Consensus 661 ~~~~ 664 (786)
....
T Consensus 486 ~~~~ 489 (514)
T 2gw1_A 486 LQAI 489 (514)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.97 E-value=3.2e-29 Score=281.75 Aligned_cols=444 Identities=13% Similarity=0.091 Sum_probs=330.7
Q ss_pred CCHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHhcCCChHHHHHHHHHHHccCCCCHHHHH--
Q 003918 100 KMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFI-- 177 (786)
Q Consensus 100 ~~~~~w~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~w~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~-- 177 (786)
..+..|...+..+...|++++|...|++++..+|.+ ...|..++.++...|++ ++|+..|+++++.+|++...+.
T Consensus 23 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~l 99 (537)
T 3fp2_A 23 AYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNE--PVFYSNISACYISTGDL-EKVIEFTTKALEIKPDHSKALLRR 99 (537)
T ss_dssp HHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCC--cHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCchHHHHHHH
Confidence 356789999999999999999999999999999975 88899999999999999 9999999999999999986554
Q ss_pred -HHHHhcCCHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHhcccccccCCcHHHHHHhhhhccCchhHHHHHHHH
Q 003918 178 -EFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLA 256 (786)
Q Consensus 178 -~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la 256 (786)
..+...|++++|+..|+ .+... | +. ... ..
T Consensus 100 a~~~~~~g~~~~A~~~~~-~~~~~-------~-----------------~~---------------------~~~---~~ 130 (537)
T 3fp2_A 100 ASANESLGNFTDAMFDLS-VLSLN-------G-----------------DF---------------------DGA---SI 130 (537)
T ss_dssp HHHHHHHTCHHHHHHHHH-HHC----------------------------------------------------------
T ss_pred HHHHHHcCCHHHHHHHHH-HHhcC-------C-----------------CC---------------------ChH---HH
Confidence 67778999999999986 54211 0 00 000 01
Q ss_pred HHHHhhccHHHHHHHHHHHhhccCchhcHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhH
Q 003918 257 DYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSM 336 (786)
Q Consensus 257 ~~y~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (786)
..+...+...+|...+++++...|.....
T Consensus 131 ~~~~~~~~~~~a~~~~~~~l~~~~~~~~~--------------------------------------------------- 159 (537)
T 3fp2_A 131 EPMLERNLNKQAMKVLNENLSKDEGRGSQ--------------------------------------------------- 159 (537)
T ss_dssp -CHHHHHHHHHHHHHHHHHCC-------C---------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccccc---------------------------------------------------
Confidence 12233445567888888888765532100
Q ss_pred HHHHHhHhcccccCccchHHHHHHHHHhhhhhchhhhhhhhhhcCCCCHHHHHHHHHhhcCCchhHHHHHHHHHhccCCC
Q 003918 337 AEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPM 416 (786)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~ 416 (786)
..+...... ..+. ..+...+...+.+.. ..++
T Consensus 160 -----------~~~~~~~~~---~~~~--------------------------------~~~~~~~~~~~~~~~-~~~~- 191 (537)
T 3fp2_A 160 -----------VLPSNTSLA---SFFG--------------------------------IFDSHLEVSSVNTSS-NYDT- 191 (537)
T ss_dssp -----------CCCCHHHHH---HHHH--------------------------------TSCHHHHHHTSCCCC-SSCS-
T ss_pred -----------ccchHhHHH---HHHH--------------------------------hcChHHHHHHHhhcc-cccc-
Confidence 000000000 0000 000011111111100 0000
Q ss_pred ccCCCcHHHHHHH--------HHHHHHcCChhHHHHHHHHHHhccCCChhh---HHHHHHHHHHHHHhccCHHHHHHHHH
Q 003918 417 KAVGKPHTLWVAF--------AKLYETYKDIANARVIFDKAVQVNYKTVDH---LASIWCEWAEMELRHKNFKGALELMR 485 (786)
Q Consensus 417 ~~~~~~~~~~~~~--------a~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~~~~~~a~~~~~~g~~~~A~~~~~ 485 (786)
....++..+ +.+....|++++|+..|++++..+|+++.. ...++..++.++...|++++|+..|+
T Consensus 192 ----~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~ 267 (537)
T 3fp2_A 192 ----AYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQ 267 (537)
T ss_dssp ----SHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 111122222 223334568999999999999999998632 23467778888899999999999999
Q ss_pred HHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccH
Q 003918 486 RATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYF 565 (786)
Q Consensus 486 ~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~ 565 (786)
+++...| . ...|..++.++...|++++|+..|+++++.+|+++.+|..+|.++...|++
T Consensus 268 ~~~~~~~--------------------~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 326 (537)
T 3fp2_A 268 ESINLHP--------------------T-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDY 326 (537)
T ss_dssp HHHHHCC--------------------C-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHhcCC--------------------C-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCH
Confidence 9999999 5 788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHH
Q 003918 566 EDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMK 645 (786)
Q Consensus 566 ~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~ 645 (786)
++|+..|++++.. +|.+..+|..++..+. ..|++++|...|+++++..|+ +..++..+|.++...|++++|..
T Consensus 327 ~~A~~~~~~a~~~--~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~ 399 (537)
T 3fp2_A 327 KNAKEDFQKAQSL--NPENVYPYIQLACLLY---KQGKFTESEAFFNETKLKFPT--LPEVPTFFAEILTDRGDFDTAIK 399 (537)
T ss_dssp HHHHHHHHHHHHH--CTTCSHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCTT--CTHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHhCCHHHHHH
Confidence 9999999999998 6888888888665544 348999999999999999998 67899999999999999999999
Q ss_pred HHHHHHhcCCCCchhhH----HHHHHHHHHHh----------cChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcC
Q 003918 646 VYDQATKAVPNHEKLGM----YEIYIARAAEI----------FGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLG 711 (786)
Q Consensus 646 ~~~~~l~~~p~~~~~~~----~~~~~~~~~~~----------~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g 711 (786)
.|+++++..|.++.... +......+... |++++|+..|+++++. .|+ .+.++..+|.++...|
T Consensus 400 ~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~p~--~~~~~~~l~~~~~~~g 476 (537)
T 3fp2_A 400 QYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL-DPR--SEQAKIGLAQLKLQME 476 (537)
T ss_dssp HHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH-CTT--CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh-CCC--CHHHHHHHHHHHHHhc
Confidence 99999999886654432 22222333456 9999999999999999 888 4679999999999999
Q ss_pred ChHHHHHHHHHHHccCCCC
Q 003918 712 EIDRARGIYVFASQFADPR 730 (786)
Q Consensus 712 ~~~~A~~~~~~al~~~~p~ 730 (786)
++++|..+|+++++. .|+
T Consensus 477 ~~~~A~~~~~~al~~-~~~ 494 (537)
T 3fp2_A 477 KIDEAIELFEDSAIL-ART 494 (537)
T ss_dssp CHHHHHHHHHHHHHH-C--
T ss_pred cHHHHHHHHHHHHHh-CCC
Confidence 999999999999998 676
No 12
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.7e-28 Score=268.83 Aligned_cols=286 Identities=12% Similarity=0.103 Sum_probs=252.8
Q ss_pred CcHHHHHHHHHHHHH---cCChhHHHHHHHHHHh-----c--cCCCh---hhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 003918 421 KPHTLWVAFAKLYET---YKDIANARVIFDKAVQ-----V--NYKTV---DHLASIWCEWAEMELRHKNFKGALELMRRA 487 (786)
Q Consensus 421 ~~~~~~~~~a~~~~~---~~~~~~A~~~~~~al~-----~--~p~~~---~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 487 (786)
.+...+...+..+.. .|++++|+..|++++. . +|++. .....+|..++.++...|++++|+..|+++
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 263 (514)
T 2gw1_A 184 NEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKA 263 (514)
T ss_dssp CHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 568888888887776 8999999999999999 5 66553 334588999999999999999999999999
Q ss_pred hcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHH
Q 003918 488 TAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFED 567 (786)
Q Consensus 488 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~ 567 (786)
+...| . ..+|..++.++...|++++|+..|++++..+|.++.++..+|.++...|++++
T Consensus 264 l~~~~--------------------~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 264 IELFP--------------------R-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHCC--------------------C-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTH
T ss_pred HhhCc--------------------c-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHH
Confidence 99999 6 78899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 003918 568 AFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVY 647 (786)
Q Consensus 568 A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~ 647 (786)
|+..|++++.. +|.+..+|..++..+. ..|++++|...|+++++..|+ +..++..+|.++...|++++|...|
T Consensus 323 A~~~~~~~~~~--~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 323 AGKDFDKAKEL--DPENIFPYIQLACLAY---RENKFDDCETLFSEAKRKFPE--APEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp HHHHHHHHHHT--CSSCSHHHHHHHHHTT---TTTCHHHHHHHHHHHHHHSTT--CSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHh--ChhhHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHccc--CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999997 6888888887655443 568999999999999999998 5689999999999999999999999
Q ss_pred HHHHhcCCCCch----hhHHHHHHHHHHH---hcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHH
Q 003918 648 DQATKAVPNHEK----LGMYEIYIARAAE---IFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIY 720 (786)
Q Consensus 648 ~~~l~~~p~~~~----~~~~~~~~~~~~~---~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 720 (786)
+++++..|.++. ...+...+..+.. .|++++|+..|++++.. .|+ .+.++..++.++...|++++|...|
T Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~--~~~~~~~la~~~~~~g~~~~A~~~~ 472 (514)
T 2gw1_A 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL-DPR--SEQAKIGLAQMKLQQEDIDEAITLF 472 (514)
T ss_dssp HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH-CTT--CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh-Ccc--cHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 999999998755 2355555556667 89999999999999999 887 4679999999999999999999999
Q ss_pred HHHHccCCCCCCHHHHHHH
Q 003918 721 VFASQFADPRSDTEFWNRW 739 (786)
Q Consensus 721 ~~al~~~~p~~~~~~~~~~ 739 (786)
+++++. +|+ +...|..+
T Consensus 473 ~~a~~~-~~~-~~~~~~~~ 489 (514)
T 2gw1_A 473 EESADL-ART-MEEKLQAI 489 (514)
T ss_dssp HHHHHH-CSS-HHHHHHHH
T ss_pred HHHHHh-ccc-cHHHHHHH
Confidence 999998 787 57777655
No 13
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.97 E-value=3.9e-27 Score=258.41 Aligned_cols=349 Identities=10% Similarity=-0.006 Sum_probs=221.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcHHHHHHH
Q 003918 45 RFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRT 124 (786)
Q Consensus 45 ~~~~~~~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~~~A~~~ 124 (786)
+...+.+++..+|.++..|...+...... |++++|...|+++++.+|.++.+|..++..+...|+++.|...
T Consensus 11 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~--------g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 82 (450)
T 2y4t_A 11 VDLGTENLYFQSMADVEKHLELGKKLLAA--------GQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPD 82 (450)
T ss_dssp ------------CHHHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccccccccccccHHHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34455666777777777777777766654 6777777777777777777777777777777777777777777
Q ss_pred HHHHHhhCCCCcchhhHHHHHHHHHhcCCChHHHHHHHHHHHccCCCCHHHHHHHHHhcCCHHHHHHHHHHHhcCCCccc
Q 003918 125 FDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYS 204 (786)
Q Consensus 125 ~~~al~~~p~~~~~~~w~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 204 (786)
|++++..+|.+ ...|..++.++...|++ ++|+..|+++++.+|.+...
T Consensus 83 ~~~al~~~p~~--~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~----------------------------- 130 (450)
T 2y4t_A 83 LTKVIQLKMDF--TAARLQRGHLLLKQGKL-DEAEDDFKKVLKSNPSENEE----------------------------- 130 (450)
T ss_dssp HHHHHHHCTTC--HHHHHHHHHHHHHTTCH-HHHHHHHHHHHTSCCCHHHH-----------------------------
T ss_pred HHHHHhcCCCc--HHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCChhh-----------------------------
Confidence 77777777754 56666667666667777 77777777777666653300
Q ss_pred cCCCcchHHHHHHHHHHhcccccccCCcHHHHHHhhhhccCchhHHHHHHHHHHHHhhccHHHHHHHHHHHhhccCchhc
Q 003918 205 IKGKTKHRLWLELCDLLTTHATEISGLNVDAIIRGGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRD 284 (786)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~p~~~~ 284 (786)
...|..+..... ...+..+|..+...|++++|+..|++++...|
T Consensus 131 ------~~~~~~l~~~~~--------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---- 174 (450)
T 2y4t_A 131 ------KEAQSQLIKSDE--------------------------MQRLRSQALNAFGSGDYTAAIAFLDKILEVCV---- 174 (450)
T ss_dssp ------HHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT----
T ss_pred ------HHHHHHHHHHHH--------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----
Confidence 012222221110 12344455666666777777766666654322
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCcchhhhHhhhhhhHHHHHHhHhcccccCccchHHHHHHHHHh
Q 003918 285 FSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDEEHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEH 364 (786)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (786)
T Consensus 175 -------------------------------------------------------------------------------- 174 (450)
T 2y4t_A 175 -------------------------------------------------------------------------------- 174 (450)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhchhhhhhhhhhcCCCCHHHHHHHHHhhcCCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHH
Q 003918 365 LMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARV 444 (786)
Q Consensus 365 ~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 444 (786)
.++.++..+|.++...|++++|+.
T Consensus 175 --------------------------------------------------------~~~~~~~~l~~~~~~~g~~~~A~~ 198 (450)
T 2y4t_A 175 --------------------------------------------------------WDAELRELRAECFIKEGEPRKAIS 198 (450)
T ss_dssp --------------------------------------------------------TCHHHHHHHHHHHHHTTCGGGGHH
T ss_pred --------------------------------------------------------CChHHHHHHHHHHHHCCCHHHHHH
Confidence 223334444444444444444444
Q ss_pred HHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHH------
Q 003918 445 IFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLW------ 518 (786)
Q Consensus 445 ~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 518 (786)
.|++++..+|.++ .+|..++.++...|++++|+..|++++...| ++...+
T Consensus 199 ~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p--------------------~~~~~~~~~~~~ 254 (450)
T 2y4t_A 199 DLKAASKLKNDNT----EAFYKISTLYYQLGDHELSLSEVRECLKLDQ--------------------DHKRCFAHYKQV 254 (450)
T ss_dssp HHHHHHHHHCSCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------TCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------------------ChHHHHHHHHHH
Confidence 4444444444443 4444444444444444444444444444444 222222
Q ss_pred ------HHHHHHHHHcCChHHHHHHHHHHHhhccCCHH----HHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHH
Q 003918 519 ------TFYVDLEESLGNLESTRAVYERILDLRIATPQ----IIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIW 588 (786)
Q Consensus 519 ------~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~ 588 (786)
...+.++...|++++|+..|+++++..|+++. ++..+|.++...|++++|+..+++++.. +|.+..+|
T Consensus 255 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~ 332 (450)
T 2y4t_A 255 KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNAL 332 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHH
Confidence 33477888899999999999999999998854 7788899999999999999999999987 68888888
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHH
Q 003918 589 VTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEED 636 (786)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~ 636 (786)
..++..+. ..|++++|+..|+++++..|+ +..++..++.+...
T Consensus 333 ~~l~~~~~---~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~ 375 (450)
T 2y4t_A 333 KDRAEAYL---IEEMYDEAIQDYETAQEHNEN--DQQIREGLEKAQRL 375 (450)
T ss_dssp HHHHHHHH---HTTCHHHHHHHHHHHHTTSSS--CHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HhcCHHHHHHHHHHHHHhCcc--hHHHHHHHHHHHHH
Confidence 88765554 348899999999999999998 67788887765443
No 14
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.97 E-value=2.3e-27 Score=260.26 Aligned_cols=324 Identities=13% Similarity=0.064 Sum_probs=283.1
Q ss_pred hhhcCCCCHHHHHHHHHhhc--CCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccC
Q 003918 377 LLRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNY 454 (786)
Q Consensus 377 ~l~~~p~~~~~~~~~~~~~~--~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 454 (786)
++..+|.+...|+.++..+. |++++|+..|++++. .+| .++.+|..+|..+...|++++|+..|+++++.+|
T Consensus 18 ~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~-~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 91 (450)
T 2y4t_A 18 LYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVD-GDP-----DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM 91 (450)
T ss_dssp -----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred cccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCC-----ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 36779999999999988874 999999999999995 566 6799999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcH---HHHHH-----------
Q 003918 455 KTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSL---RLWTF----------- 520 (786)
Q Consensus 455 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----------- 520 (786)
+++ .+|..++.++...|++++|+.+|++++...| ++. ..|..
T Consensus 92 ~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------------------~~~~~~~~~~~l~~~~~~~~~~ 147 (450)
T 2y4t_A 92 DFT----AARLQRGHLLLKQGKLDEAEDDFKKVLKSNP--------------------SENEEKEAQSQLIKSDEMQRLR 147 (450)
T ss_dssp TCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHTSCC--------------------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--------------------CChhhHHHHHHHHHHHHHHHHH
Confidence 987 8999999999999999999999999999988 333 44433
Q ss_pred -HHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHh
Q 003918 521 -YVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRY 599 (786)
Q Consensus 521 -~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~ 599 (786)
.+..+...|++++|+..|+++++..|.++.++..+|.++...|++++|+..|++++.. +|.++.+|..++..+.
T Consensus 148 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~--- 222 (450)
T 2y4t_A 148 SQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL--KNDNTEAFYKISTLYY--- 222 (450)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH--HCSCHHHHHHHHHHHH---
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH---
Confidence 3666888999999999999999999999999999999999999999999999999997 6889999998765554
Q ss_pred CCCChHHHHHHHHHHHhhCCccCcHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhcCCCCch--hhHHHH
Q 003918 600 GKTKLERARELFENAVETAPADAVKPLYLQY------------AKLEEDYGLAKRAMKVYDQATKAVPNHEK--LGMYEI 665 (786)
Q Consensus 600 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~------------a~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~~~~ 665 (786)
..|++++|...|+++++..|+ +...+..+ +..+...|++++|+..|+++++..|.++. ...+..
T Consensus 223 ~~g~~~~A~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 300 (450)
T 2y4t_A 223 QLGDHELSLSEVRECLKLDQD--HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKER 300 (450)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCC--hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 348999999999999999998 56666655 88999999999999999999999998655 235555
Q ss_pred HHHHHHHhcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCCCHHHHHHHHHH
Q 003918 666 YIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEF 742 (786)
Q Consensus 666 ~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~ 742 (786)
.+..+.+.|++++|+..+++++.. .|+ .+.+|..+|.++...|++++|...|+++++. +|+ +...|..+...
T Consensus 301 l~~~~~~~g~~~~A~~~~~~a~~~-~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~p~-~~~~~~~l~~~ 372 (450)
T 2y4t_A 301 ICHCFSKDEKPVEAIRVCSEVLQM-EPD--NVNALKDRAEAYLIEEMYDEAIQDYETAQEH-NEN-DQQIREGLEKA 372 (450)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHH-CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-SSS-CHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh-Ccc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-Ccc-hHHHHHHHHHH
Confidence 566667899999999999999999 887 4679999999999999999999999999997 788 68888888843
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.96 E-value=6.3e-26 Score=240.26 Aligned_cols=333 Identities=12% Similarity=0.044 Sum_probs=277.9
Q ss_pred CHHHHHHHHHhhc--CCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHH
Q 003918 384 NVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLA 461 (786)
Q Consensus 384 ~~~~~~~~~~~~~--~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 461 (786)
+++.|+..|..+. |++++|+..|++++. .+| .++.+|..+|.++...|++++|+..|++++..+|+++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~-~~p-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---- 71 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVD-GDP-----DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFT---- 71 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCT-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCc-----ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcc----
Confidence 3456777776663 999999999999995 566 6789999999999999999999999999999999987
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHhcCCc---hHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHH
Q 003918 462 SIWCEWAEMELRHKNFKGALELMRRATAEPS---VEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVY 538 (786)
Q Consensus 462 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 538 (786)
.+|..++.++...|++++|+..|++++...| ........ ... ......+...+.++...|++++|+..|
T Consensus 72 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~-------l~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~ 143 (359)
T 3ieg_A 72 AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQ-------LVK-ADEMQRLRSQALDAFDGADYTAAITFL 143 (359)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHH-------HHH-HHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHH-------HHH-HHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 8999999999999999999999999999887 32100000 000 001122334478888999999999999
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhC
Q 003918 539 ERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETA 618 (786)
Q Consensus 539 ~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 618 (786)
+++++..|+++.++..+|.++...|++++|+..+++++.. .|.++.+|..++..+.. .|++++|...|+++++..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~a~~~~ 218 (359)
T 3ieg_A 144 DKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL--KSDNTEAFYKISTLYYQ---LGDHELSLSEVRECLKLD 218 (359)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CSCCHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999997 69999999987765553 378999999999999999
Q ss_pred CccCcHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhh--HHHHHHHHHHHhcChhHHHHHHH
Q 003918 619 PADAVKPLYL------------QYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLG--MYEIYIARAAEIFGVPKTREIYE 684 (786)
Q Consensus 619 p~~~~~~~~~------------~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~--~~~~~~~~~~~~~~~~~A~~~~~ 684 (786)
|+ +...+. ..|.++...|++++|...|+++++..|.++... .+......+...|++++|...|+
T Consensus 219 ~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 296 (359)
T 3ieg_A 219 QD--HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICS 296 (359)
T ss_dssp TT--CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cc--chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 98 455444 337788999999999999999999999865442 23344555678999999999999
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHc
Q 003918 685 QAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNH 746 (786)
Q Consensus 685 ~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~ 746 (786)
++++. .|+ .+.+|..+|.++...|++++|...|+++++. +|+ +...+..+.......
T Consensus 297 ~~~~~-~~~--~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~p~-~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 297 EVLQM-EPD--NVNALKDRAEAYLIEEMYDEAIQDYEAAQEH-NEN-DQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHH-CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CTT-CHHHHHHHHHHHHHH
T ss_pred HHHHh-Ccc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCC-ChHHHHHHHHHHHHH
Confidence 99999 887 4679999999999999999999999999997 788 588888777665543
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.96 E-value=1.8e-25 Score=236.77 Aligned_cols=311 Identities=11% Similarity=0.011 Sum_probs=275.8
Q ss_pred cHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhc
Q 003918 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAA 501 (786)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 501 (786)
++..|..+|..+...|++++|+..|++++..+|+++ .+|..++.++...|++++|+..|++++...|
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--------- 68 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNY----IAYYRRATVFLAMGKSKAALPDLTKVIALKM--------- 68 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---------
Confidence 467899999999999999999999999999999997 8999999999999999999999999999988
Q ss_pred cCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcc---CCHHHHHHH------------HHHHHHcccHH
Q 003918 502 DGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRI---ATPQIIINY------------ALLLEEHKYFE 566 (786)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~~------------~~~~~~~g~~~ 566 (786)
++..+|..++.++...|++++|+..|+++++..| +++.++..+ +.++...|+++
T Consensus 69 -----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 69 -----------DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYT 137 (359)
T ss_dssp -----------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred -----------CcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHH
Confidence 7889999999999999999999999999999999 888888877 68899999999
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHH
Q 003918 567 DAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKV 646 (786)
Q Consensus 567 ~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~ 646 (786)
+|+..+++++.. .|.++.+|...+..+. ..|++++|...|+++++..|. +..++..+|.++...|++++|...
T Consensus 138 ~A~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~ 210 (359)
T 3ieg_A 138 AAITFLDKILEV--CVWDAELRELRAECFI---KEGEPRKAISDLKAASKLKSD--NTEAFYKISTLYYQLGDHELSLSE 210 (359)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHTTCSC--CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCchHHHHHHHHHHH---HCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999997 6899998888665544 348999999999999999998 789999999999999999999999
Q ss_pred HHHHHhcCCCCchhhHHH----------HHHHHHHHhcChhHHHHHHHHHHHhcCCChhHH--HHHHHHHHHHHHcCChH
Q 003918 647 YDQATKAVPNHEKLGMYE----------IYIARAAEIFGVPKTREIYEQAIESGLPDKDVK--AMCLKYAELEKSLGEID 714 (786)
Q Consensus 647 ~~~~l~~~p~~~~~~~~~----------~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~--~~~~~~~~~~~~~g~~~ 714 (786)
|+++++..|+++....+. ..+..+...|++++|...|++++.. .|++... .++..+|.++...|+++
T Consensus 211 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~ 289 (359)
T 3ieg_A 211 VRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT-EPSVAEYTVRSKERICHCFSKDEKPV 289 (359)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHHHHHccCHH
Confidence 999999999876544322 1133456789999999999999999 8875432 45667899999999999
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh
Q 003918 715 RARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKRSVSASY 766 (786)
Q Consensus 715 ~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~G~~~~a~~~~~~~~~~~~~~ 766 (786)
+|..+|+++++. +|+ +...|..++..+...|+.++|.+.++....+.+..
T Consensus 290 ~A~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~ 339 (359)
T 3ieg_A 290 EAIRICSEVLQM-EPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEND 339 (359)
T ss_dssp HHHHHHHHHHHH-CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHHHh-Ccc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 999999999997 788 69999999999999999999999996555444433
No 17
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.94 E-value=5.6e-25 Score=242.84 Aligned_cols=283 Identities=10% Similarity=0.039 Sum_probs=210.6
Q ss_pred CCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHH---HcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHH----
Q 003918 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYE---TYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAE---- 469 (786)
Q Consensus 397 ~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~---~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~---- 469 (786)
+++++|+..|++++ .++| +++.++..++..+. ..++.++|+..|+++++.+|+++ .++..++.
T Consensus 152 ~~y~~A~~~~~kal-~~~p-----~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~----~~~~~l~~~~~~ 221 (472)
T 4g1t_A 152 NQNERAKVCFEKAL-EKKP-----KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ----YLKVLLALKLHK 221 (472)
T ss_dssp THHHHHHHHHHHHH-HHST-----TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH----HHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH-HhCC-----CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch----HHHHHHHHHHHH
Confidence 56889999999999 4677 68888888887754 45778899999999999999987 55555544
Q ss_pred HHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCH
Q 003918 470 MELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATP 549 (786)
Q Consensus 470 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 549 (786)
+....|++++|.+++++++...| ....++..++.++...|++++|+..|+++++..|+++
T Consensus 222 ~~~~~~~~~~a~~~~~~al~~~~--------------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 281 (472)
T 4g1t_A 222 MREEGEEEGEGEKLVEEALEKAP--------------------GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNA 281 (472)
T ss_dssp CC------CHHHHHHHHHHHHCS--------------------SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHhhhhHHHHHHHHHHHHHHhCc--------------------cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChH
Confidence 34456788999999999999888 7888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHc-------------------ccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHH
Q 003918 550 QIIINYALLLEEH-------------------KYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERAREL 610 (786)
Q Consensus 550 ~~~~~~~~~~~~~-------------------g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 610 (786)
.++..+|.+|... +.++.|+..+++++.. +|.+...|...+..+. ..|++++|+..
T Consensus 282 ~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~lg~~~~---~~~~~~~A~~~ 356 (472)
T 4g1t_A 282 YLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVCSILASLHA---LADQYEEAEYY 356 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCHHHHHHHHH---HTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhhhhHHHHHH---HhccHHHHHHH
Confidence 9999999887643 3467889999999987 6887777877554443 34889999999
Q ss_pred HHHHHhhCCccCc-HHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHH
Q 003918 611 FENAVETAPADAV-KPLYLQYAKLE-EDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIE 688 (786)
Q Consensus 611 ~~~al~~~p~~~~-~~~~~~~a~~~-~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 688 (786)
|+++++..|++.. ..++..++.+. ...|++++|+..|+++++..|.+.. ..+....+..++++++.
T Consensus 357 ~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~------------~~~~~~~l~~~~~~~l~ 424 (472)
T 4g1t_A 357 FQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSRE------------KEKMKDKLQKIAKMRLS 424 (472)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHH------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHH------------HHHHHHHHHHHHHHHHH
Confidence 9999998876321 23566777654 4578999999999999999987421 12234556778888998
Q ss_pred hcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCC
Q 003918 689 SGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPR 730 (786)
Q Consensus 689 ~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~ 730 (786)
. .|. .+.+|..+|.++...|++++|+++|++|++. +|.
T Consensus 425 ~-~p~--~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~-~~~ 462 (472)
T 4g1t_A 425 K-NGA--DSEALHVLAFLQELNEKMQQADEDSERGLES-GSL 462 (472)
T ss_dssp H-CC---CTTHHHHHHHHHHHHHHCC----------------
T ss_pred h-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCC
Confidence 8 887 4568999999999999999999999999986 454
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.94 E-value=1e-24 Score=228.17 Aligned_cols=295 Identities=11% Similarity=0.022 Sum_probs=246.7
Q ss_pred CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhh
Q 003918 421 KPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVA 500 (786)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 500 (786)
.++..+...|..+...|++++|+.+|++++..+|.+. ..+..++.++...|++++|..++++++...|
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-------- 87 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHA----SCLPVHIGTLVELNKANELFYLSHKLVDLYP-------- 87 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT----TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--------
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCh----hhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc--------
Confidence 4566778888889999999999999999999999887 6777788888889999999999999998888
Q ss_pred ccCChhHHHHhhhcHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhc
Q 003918 501 ADGNEPVQMKLHKSLRLWTFYVDLEESLG-NLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIF 579 (786)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 579 (786)
.++.+|..++.++...| ++++|+..|+++++.+|.++.+|..+|.++...|++++|+..|++++..
T Consensus 88 ------------~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~- 154 (330)
T 3hym_B 88 ------------SNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL- 154 (330)
T ss_dssp ------------TSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-
T ss_pred ------------CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-
Confidence 67888999999999999 8999999999999999999999999999999999999999999999997
Q ss_pred CCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---
Q 003918 580 KYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPN--- 656 (786)
Q Consensus 580 ~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~--- 656 (786)
.|.+...|..++..+. ..|++++|...|+++++..|. +..++..+|.++...|++++|...++++++..|.
T Consensus 155 -~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~al~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 228 (330)
T 3hym_B 155 -MKGCHLPMLYIGLEYG---LTNNSKLAERFFSQALSIAPE--DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGN 228 (330)
T ss_dssp -TTTCSHHHHHHHHHHH---HTTCHHHHHHHHHHHHTTCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSC
T ss_pred -ccccHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccc
Confidence 5777777776554433 347899999999999999998 6788999999999999999999999999987632
Q ss_pred ----CchhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCCC
Q 003918 657 ----HEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSD 732 (786)
Q Consensus 657 ----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~~~ 732 (786)
......+..++..+...|++++|+..|+++++. .|+ .+.+|..+|.++...|++++|..+|+++++. +|+ +
T Consensus 229 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~-~ 303 (330)
T 3hym_B 229 EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL-IPQ--NASTYSAIGYIHSLMGNFENAVDYFHTALGL-RRD-D 303 (330)
T ss_dssp SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STT--CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT-CSC-C
T ss_pred cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh-Ccc--chHHHHHHHHHHHHhccHHHHHHHHHHHHcc-CCC-c
Confidence 112334455555566889999999999999998 787 4568999999999999999999999999997 787 5
Q ss_pred HHHHHHHHHHH-HHcCCHHH
Q 003918 733 TEFWNRWHEFE-VNHGNEDT 751 (786)
Q Consensus 733 ~~~~~~~~~~~-~~~G~~~~ 751 (786)
...|..++..+ ...|+.+.
T Consensus 304 ~~~~~~l~~~~~~~~g~~~a 323 (330)
T 3hym_B 304 TFSVTMLGHCIEMYIGDSEA 323 (330)
T ss_dssp HHHHHHHHHHHHTTTTC---
T ss_pred hHHHHHHHHHHHHHhCchhc
Confidence 88888888865 56677544
No 19
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.93 E-value=3e-24 Score=234.92 Aligned_cols=247 Identities=11% Similarity=0.082 Sum_probs=166.1
Q ss_pred hHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHH
Q 003918 401 KQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGA 480 (786)
Q Consensus 401 ~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A 480 (786)
.+..+|++++.. .| ..+.+|+.++.++...|+++.|+.+|++++.. |.+. .+|..++.+.....-++
T Consensus 197 Rv~~~ye~al~~-~p-----~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~----~l~~~y~~~~e~~~~~~-- 263 (493)
T 2uy1_A 197 RMHFIHNYILDS-FY-----YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGM----FLSLYYGLVMDEEAVYG-- 263 (493)
T ss_dssp HHHHHHHHHHHH-TT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSS----HHHHHHHHHTTCTHHHH--
T ss_pred HHHHHHHHHHHc-CC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcH----HHHHHHHhhcchhHHHH--
Confidence 456789999853 34 57999999999999999999999999999999 9887 88988877631110011
Q ss_pred HHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHH
Q 003918 481 LELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLE 560 (786)
Q Consensus 481 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 560 (786)
.++++.+ ..... ....+ .......+|..|+.++...++.+.|+.+|+++ ...+....+|...+.++.
T Consensus 264 -~l~~~~~-~~~~~--------~~~~~--~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~ 330 (493)
T 2uy1_A 264 -DLKRKYS-MGEAE--------SAEKV--FSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEY 330 (493)
T ss_dssp -HHHHHTC---------------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHH
T ss_pred -HHHHHHH-hhccc--------hhhhh--cccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHH
Confidence 1111111 00000 00000 00134578889998888888889999999998 433346678888888887
Q ss_pred Hcc-cHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCC
Q 003918 561 EHK-YFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGL 639 (786)
Q Consensus 561 ~~g-~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~ 639 (786)
..| +++.|.++|+++++. .|+.+..|..|++.... .|+.+.||.+|+++ +. +..+|..+..++...|+
T Consensus 331 ~~~~d~~~ar~ife~al~~--~~~~~~~~~~yid~e~~---~~~~~~aR~l~er~----~k--~~~lw~~~~~fE~~~G~ 399 (493)
T 2uy1_A 331 YATGSRATPYNIFSSGLLK--HPDSTLLKEEFFLFLLR---IGDEENARALFKRL----EK--TSRMWDSMIEYEFMVGS 399 (493)
T ss_dssp HHHCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH---HTCHHHHHHHHHHS----CC--BHHHHHHHHHHHHHHSC
T ss_pred HHCCChHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHH----HH--HHHHHHHHHHHHHHCCC
Confidence 776 588899999999887 47778888888775443 26788889998887 23 57888888888888898
Q ss_pred HHHHHHHHHHHHhcCCC---CchhhHHHHHHHHHHHhcChhHHHHHHH
Q 003918 640 AKRAMKVYDQATKAVPN---HEKLGMYEIYIARAAEIFGVPKTREIYE 684 (786)
Q Consensus 640 ~~~A~~~~~~~l~~~p~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 684 (786)
.+.++++++++++.... +....+...|+.++...|.+.....-|+
T Consensus 400 ~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~fe~~~g~l~~~~~~~~ 447 (493)
T 2uy1_A 400 MELFRELVDQKMDAIKADAILPPLPPREHNVQMEGILGRYHCFLDSFN 447 (493)
T ss_dssp HHHHHHHHHHHHHHHHTTCCBCCCCCC--CCCCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcccccCCcccccccHHHHHHHhhhHHHHHHHhh
Confidence 88888888888753321 1122233444444334455555444443
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.93 E-value=5.9e-24 Score=222.32 Aligned_cols=295 Identities=11% Similarity=0.003 Sum_probs=255.1
Q ss_pred hhcCCCCHHHHHHHHHhhc--CCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCC
Q 003918 378 LRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYK 455 (786)
Q Consensus 378 l~~~p~~~~~~~~~~~~~~--~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 455 (786)
+...|.+...++..+..+. |++++|+..|++++. .+| .++..+..++..+...|++++|...|++++..+|+
T Consensus 15 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~-~~p-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 88 (330)
T 3hym_B 15 VDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVME-KDP-----FHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS 88 (330)
T ss_dssp -----CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHH-HCT-----TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCC-----CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC
Confidence 4556777777777777664 999999999999995 566 56778888899999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhcc-CHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHH
Q 003918 456 TVDHLASIWCEWAEMELRHK-NFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLEST 534 (786)
Q Consensus 456 ~~~~~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 534 (786)
++ .+|..++.++...| ++++|+..|++++...| .++..|..++.++...|++++|
T Consensus 89 ~~----~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~--------------------~~~~~~~~l~~~~~~~~~~~~A 144 (330)
T 3hym_B 89 NP----VSWFAVGCYYLMVGHKNEHARRYLSKATTLEK--------------------TYGPAWIAYGHSFAVESEHDQA 144 (330)
T ss_dssp ST----HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCT--------------------TCTHHHHHHHHHHHHHTCHHHH
T ss_pred CH----HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC--------------------ccHHHHHHHHHHHHHccCHHHH
Confidence 98 89999999999999 99999999999999999 7788999999999999999999
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 003918 535 RAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENA 614 (786)
Q Consensus 535 ~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 614 (786)
+..|+++++..|+++.++..+|.++...|++++|+..+++++.. +|.++.+|..++..+. ..|++++|...|+++
T Consensus 145 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~a 219 (330)
T 3hym_B 145 MAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI--APEDPFVMHEVGVVAF---QNGEWKTAEKWFLDA 219 (330)
T ss_dssp HHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CCCChHHHHHHHHHHH---HcccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999997 6999999988765554 348999999999999
Q ss_pred HhhC---------CccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHH
Q 003918 615 VETA---------PADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQ 685 (786)
Q Consensus 615 l~~~---------p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 685 (786)
++.. |. ...++..+|.++...|++++|...|+++++..|.++......+ ..+...|++++|...|++
T Consensus 220 ~~~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la--~~~~~~g~~~~A~~~~~~ 295 (330)
T 3hym_B 220 LEKIKAIGNEVTVDK--WEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIG--YIHSLMGNFENAVDYFHT 295 (330)
T ss_dssp HHHHTTTSCSCTTTT--CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHH--HHHHHHTCHHHHHHHHHT
T ss_pred HHHhhhccccccccH--HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHH--HHHHHhccHHHHHHHHHH
Confidence 9986 33 4579999999999999999999999999999998665554444 444688999999999999
Q ss_pred HHHhcCCChhHHHHHHHHHHHH-HHcCChH
Q 003918 686 AIESGLPDKDVKAMCLKYAELE-KSLGEID 714 (786)
Q Consensus 686 al~~~~p~~~~~~~~~~~~~~~-~~~g~~~ 714 (786)
+++. .|+ .+.++..++..+ ...|+.+
T Consensus 296 al~~-~p~--~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 296 ALGL-RRD--DTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp TTTT-CSC--CHHHHHHHHHHHHTTTTC--
T ss_pred HHcc-CCC--chHHHHHHHHHHHHHhCchh
Confidence 9999 888 466888888876 5566654
No 21
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.92 E-value=1.1e-22 Score=224.50 Aligned_cols=253 Identities=12% Similarity=0.015 Sum_probs=149.6
Q ss_pred hhcCCCCHHHHHHHHHhhc------CCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 003918 378 LRQNPHNVEQWHRRVKIFE------GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQ 451 (786)
Q Consensus 378 l~~~p~~~~~~~~~~~~~~------~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 451 (786)
++.+|.+..++..++..+. +++++|...|++++. .+| ..+.++..+|.++...|++++|+..|+++++
T Consensus 202 l~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~-~~~-----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 275 (472)
T 4g1t_A 202 IRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALE-KAP-----GVTDVLRSAAKFYRRKDEPDKAIELLKKALE 275 (472)
T ss_dssp HHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHH-HCS-----SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH-hCc-----cHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 4556666655555544432 234556666666553 344 4555666666666666666666666666666
Q ss_pred ccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCCh
Q 003918 452 VNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNL 531 (786)
Q Consensus 452 ~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 531 (786)
.+|++. .++..++.++...+....+. .. ...+......+.+
T Consensus 276 ~~p~~~----~~~~~lg~~y~~~~~~~~~~---------~~--------------------------~~~~~~~~~~~~~ 316 (472)
T 4g1t_A 276 YIPNNA----YLHCQIGCCYRAKVFQVMNL---------RE--------------------------NGMYGKRKLLELI 316 (472)
T ss_dssp HSTTCH----HHHHHHHHHHHHHHHHHHHC-----------------------------------------CHHHHHHHH
T ss_pred hCCChH----HHHHHHHHHHHHHHHHhhhH---------HH--------------------------HHHHHHHHHHhhH
Confidence 666554 55555554443221110000 00 0001111123356
Q ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHH---HHHHHHHHHHHHhCCCChHHHH
Q 003918 532 ESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKD---IWVTYLSKFVKRYGKTKLERAR 608 (786)
Q Consensus 532 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~---~~~~~~~~~~~~~~~~~~~~A~ 608 (786)
+.|...|+++++.+|.++.++..+|.++...|++++|+..|++++.. +|.+.. ++..++.... ...|++++|+
T Consensus 317 ~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~Ai 392 (472)
T 4g1t_A 317 GHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK--ELTPVAKQLLHLRYGNFQL--YQMKCEDKAI 392 (472)
T ss_dssp HHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHH--HTSSCHHHHH
T ss_pred HHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHHH--HHCCCHHHHH
Confidence 88999999999999999999999999999999999999999999997 455443 3344443332 2568899999
Q ss_pred HHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHH
Q 003918 609 ELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIE 688 (786)
Q Consensus 609 ~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 688 (786)
..|+++++..|+ +... .+....+..++++++..+|.++......+.+. ...|++++|++.|++|++
T Consensus 393 ~~y~kal~i~~~--~~~~----------~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~--~~~g~~~~A~~~y~kALe 458 (472)
T 4g1t_A 393 HHFIEGVKINQK--SREK----------EKMKDKLQKIAKMRLSKNGADSEALHVLAFLQ--ELNEKMQQADEDSERGLE 458 (472)
T ss_dssp HHHHHHHHSCCC--CHHH----------HHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHH--HHHHHCC-----------
T ss_pred HHHHHHHhcCcc--cHHH----------HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHh
Confidence 999999999998 3322 12334566788999999998776665555554 578999999999999999
Q ss_pred hcCCCh
Q 003918 689 SGLPDK 694 (786)
Q Consensus 689 ~~~p~~ 694 (786)
. .|.+
T Consensus 459 ~-~~~~ 463 (472)
T 4g1t_A 459 S-GSLI 463 (472)
T ss_dssp ------
T ss_pred c-CCCC
Confidence 8 6663
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.92 E-value=7e-24 Score=225.64 Aligned_cols=294 Identities=15% Similarity=0.138 Sum_probs=239.0
Q ss_pred HHHcCChhHHHH-HHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHh
Q 003918 433 YETYKDIANARV-IFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKL 511 (786)
Q Consensus 433 ~~~~~~~~~A~~-~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 511 (786)
+...|++++|+. .|++++...|+++......|...+..+...|++++|+..|++++...|
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p------------------- 95 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP------------------- 95 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-------------------
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-------------------
Confidence 334578888988 999888888877533235678888888999999999999999998888
Q ss_pred hhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHH
Q 003918 512 HKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTY 591 (786)
Q Consensus 512 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~ 591 (786)
.++.+|..++.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++.. .|.+...+...
T Consensus 96 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~ 172 (368)
T 1fch_A 96 -KHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY--TPAYAHLVTPA 172 (368)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STTTGGGCC--
T ss_pred -CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHH
Confidence 678888889999999999999999999999999999999999999999999999999999999987 57666555321
Q ss_pred ---------------HHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 003918 592 ---------------LSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPN 656 (786)
Q Consensus 592 ---------------~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~ 656 (786)
+..+. ..|++++|+..|+++++..|...+..++..+|.++...|++++|+..|+++++..|.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 249 (368)
T 1fch_A 173 EEGAGGAGLGPSKRILGSLL---SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN 249 (368)
T ss_dssp -------------CTTHHHH---HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHhhhhcccHHHHHHHHHh---hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 22333 237899999999999999998544789999999999999999999999999999998
Q ss_pred CchhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCC-----
Q 003918 657 HEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRS----- 731 (786)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~~----- 731 (786)
++... ..++..+...|++++|+..|++++.. .|. .+.++..+|.++...|++++|..+|+++++. .|+.
T Consensus 250 ~~~~~--~~l~~~~~~~g~~~~A~~~~~~al~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~ 323 (368)
T 1fch_A 250 DYLLW--NKLGATLANGNQSEEAVAAYRRALEL-QPG--YIRSRYNLGISCINLGAHREAVEHFLEALNM-QRKSRGPRG 323 (368)
T ss_dssp CHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHH-CTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HHTC-----
T ss_pred CHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHh-CCC--cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCCCccc
Confidence 65444 44444556889999999999999999 887 4679999999999999999999999999987 5652
Q ss_pred -----CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003918 732 -----DTEFWNRWHEFEVNHGNEDTFREMLR 757 (786)
Q Consensus 732 -----~~~~~~~~~~~~~~~G~~~~a~~~~~ 757 (786)
....|..++..+...|+.++|..+.+
T Consensus 324 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 324 EGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp -CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred cccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 17899999999999999999998884
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.92 E-value=9.3e-24 Score=224.70 Aligned_cols=293 Identities=13% Similarity=0.075 Sum_probs=247.0
Q ss_pred CCchhHHH-HHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcc
Q 003918 397 GNPTKQIL-TYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHK 475 (786)
Q Consensus 397 ~~~~~a~~-~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g 475 (786)
|++++|+. .|.+++ .+.|.. +......|+.+|..+...|++++|+..|++++..+|+++ .+|..++.++...|
T Consensus 39 ~~~~~a~~~~~~~a~-~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~g 112 (368)
T 1fch_A 39 SDYDDLTSATYDKGY-QFEEEN-PLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHM----EAWQYLGTTQAENE 112 (368)
T ss_dssp -------CHHHHCCC-CCCSSC-TTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH----HHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhhHHH-hcCCCC-cccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCc
Confidence 67888888 899888 455521 111245788999999999999999999999999999987 89999999999999
Q ss_pred CHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHH--
Q 003918 476 NFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIII-- 553 (786)
Q Consensus 476 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-- 553 (786)
++++|+..|++++...| ++..+|..++.++...|++++|+..|++++...|+++..+.
T Consensus 113 ~~~~A~~~~~~al~~~~--------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 172 (368)
T 1fch_A 113 QELLAISALRRCLELKP--------------------DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPA 172 (368)
T ss_dssp CHHHHHHHHHHHHHHCT--------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC--
T ss_pred CHHHHHHHHHHHHhcCC--------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 99999999999999999 78899999999999999999999999999999999887765
Q ss_pred --------------HHHHHHHHcccHHHHHHHHHHHHhhcCCCC--hHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhh
Q 003918 554 --------------NYALLLEEHKYFEDAFRVYERGVKIFKYPH--VKDIWVTYLSKFVKRYGKTKLERARELFENAVET 617 (786)
Q Consensus 554 --------------~~~~~~~~~g~~~~A~~~~~~al~~~~~p~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 617 (786)
.++.++ ..|++++|+..|++++.. +|. +..+|..++..+. ..|++++|+..|+++++.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~ 246 (368)
T 1fch_A 173 EEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFN---LSGEYDKAVDCFTAALSV 246 (368)
T ss_dssp -------------CTTHHHH-HHHHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH
T ss_pred HHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh
Confidence 455665 899999999999999998 577 7888887665444 348999999999999999
Q ss_pred CCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChh--
Q 003918 618 APADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKD-- 695 (786)
Q Consensus 618 ~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~-- 695 (786)
.|+ +..++..+|.++...|++++|+..|+++++..|.++... ..++..+...|++++|+..|++++.. .|++.
T Consensus 247 ~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~al~~-~~~~~~~ 321 (368)
T 1fch_A 247 RPN--DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSR--YNLGISCINLGAHREAVEHFLEALNM-QRKSRGP 321 (368)
T ss_dssp CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH--HHHHHHHHHHTCHHHHHHHHHHHHHH-HHTC---
T ss_pred CcC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH--HHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCCCc
Confidence 998 688999999999999999999999999999999865444 44444556899999999999999998 66631
Q ss_pred -------HHHHHHHHHHHHHHcCChHHHHHHHHHHHcc
Q 003918 696 -------VKAMCLKYAELEKSLGEIDRARGIYVFASQF 726 (786)
Q Consensus 696 -------~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 726 (786)
...+|..++.++...|++++|..++.++++.
T Consensus 322 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 322 RGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp ---CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred cccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 1579999999999999999999999887764
No 24
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.91 E-value=6.5e-22 Score=216.37 Aligned_cols=309 Identities=14% Similarity=0.151 Sum_probs=221.3
Q ss_pred HHHHHHHHHhccCCCccCCCcHHHHHHHHHHHH----HcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcc--
Q 003918 402 QILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYE----TYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHK-- 475 (786)
Q Consensus 402 a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g-- 475 (786)
....|+.++..+.+ ...+..+|..++.++. .+|+.+.++.+|++++...+.+. ..+|..|..++...+
T Consensus 67 i~~~fe~al~~vg~---d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~---~~lw~~Y~~fE~~~~~~ 140 (493)
T 2uy1_A 67 LYEVYEFTLGQFEN---YWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSL---SELWKDFENFELELNKI 140 (493)
T ss_dssp THHHHHHHHHHSTT---CTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTH---HHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHcCC---CcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhH---HHHHHHHHHHHHHhccc
Confidence 45566666654332 1145677777777654 34567777888888877533322 467777777664422
Q ss_pred -----------CHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcC--C-----hHHHHHH
Q 003918 476 -----------NFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLG--N-----LESTRAV 537 (786)
Q Consensus 476 -----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~-----~~~A~~~ 537 (786)
.+..|+.+++.+....+ ..+...|..|+.++...+ - ..++..+
T Consensus 141 ~~~~~~~~~~~~y~~ar~~y~~~~~~~~-------------------~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ 201 (493)
T 2uy1_A 141 TGKKIVGDTLPIFQSSFQRYQQIQPLIR-------------------GWSVKNAARLIDLEMENGMKLGGRPHESRMHFI 201 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------TCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHhHHHHHHHHHHHHHHHHHh-------------------hccHHHHHHHHHHHhcCCccCcchhhHHHHHHH
Confidence 23333444444332211 024568999999986532 1 3567889
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhh
Q 003918 538 YERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVET 617 (786)
Q Consensus 538 ~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 617 (786)
|++++...|.++.+|..++.++...|+.+.|..+|++|+.. |.+..+|..|+... . .++. +++..+.
T Consensus 202 ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~y~~~~----e---~~~~---~~~l~~~ 268 (493)
T 2uy1_A 202 HNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLYYGLVM----D---EEAV---YGDLKRK 268 (493)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHT----T---CTHH---HHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHHHHhhc----c---hhHH---HHHHHHH
Confidence 99999999999999999999999999999999999999996 88888898765431 1 1111 2222221
Q ss_pred -----------CCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhc-ChhHHHHHHHH
Q 003918 618 -----------APADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIF-GVPKTREIYEQ 685 (786)
Q Consensus 618 -----------~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~ 685 (786)
.+......+|..|+.++.+.|+.++|+.+|+++ + .|. ....+|..++.++...+ +.+.|+.+|+.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~-~~~~v~i~~A~lE~~~~~d~~~ar~ife~ 345 (493)
T 2uy1_A 269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NEG-VGPHVFIYCAFIEYYATGSRATPYNIFSS 345 (493)
T ss_dssp TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSC-CCHHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCC-CChHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 011113578999999999999999999999999 3 453 23445555555544555 69999999999
Q ss_pred HHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003918 686 AIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREMLRIKR 760 (786)
Q Consensus 686 al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~G~~~~a~~~~~~~~ 760 (786)
+++. .|+ .+..|..|++++.+.|+.++|+.+|+++.+ ...+|..|..++...|+.+.++++++.+.
T Consensus 346 al~~-~~~--~~~~~~~yid~e~~~~~~~~aR~l~er~~k------~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 346 GLLK-HPD--STLLKEEFFLFLLRIGDEENARALFKRLEK------TSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHH-CTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHSCC------BHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHH-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9998 887 467899999999999999999999999832 48899999999999999999999887443
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.91 E-value=4.6e-23 Score=219.19 Aligned_cols=269 Identities=9% Similarity=0.018 Sum_probs=182.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhcc
Q 003918 423 HTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAAD 502 (786)
Q Consensus 423 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 502 (786)
...|+.+|..+...|++++|+..|++++..+|++. .+|..++.++...|++++|+..|++++...|
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---------- 130 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDA----EAWQFLGITQAENENEQAAIVALQRCLELQP---------- 130 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC----------
Confidence 34577777778888888888888888888777776 7777778877778888888888888877777
Q ss_pred CChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHH----------HHHHHHcccHHHHHHHH
Q 003918 503 GNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINY----------ALLLEEHKYFEDAFRVY 572 (786)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~----------~~~~~~~g~~~~A~~~~ 572 (786)
++..+|..++.++...|++++|+..|+++++..|+++.++..+ +.++...|++++|+..|
T Consensus 131 ----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 200 (365)
T 4eqf_A 131 ----------NNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELY 200 (365)
T ss_dssp ----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHH
T ss_pred ----------CCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHH
Confidence 5677777777777778888888888888887777666555444 66777777777777777
Q ss_pred HHHHhhcCCCC--hHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003918 573 ERGVKIFKYPH--VKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQA 650 (786)
Q Consensus 573 ~~al~~~~~p~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~ 650 (786)
++++.. +|. ++.+|..++..+.. .|++++|+..|+++++..|+ +..+|..+|.++...|++++|+..|+++
T Consensus 201 ~~al~~--~p~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~a 273 (365)
T 4eqf_A 201 LEAAHQ--NGDMIDPDLQTGLGVLFHL---SGEFNRAIDAFNAALTVRPE--DYSLWNRLGATLANGDRSEEAVEAYTRA 273 (365)
T ss_dssp HHHHHH--SCSSCCHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHh--CcCccCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777776 465 66666665544332 26677777777777777776 5667777777777777777777777777
Q ss_pred HhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChh----------HHHHHHHHHHHHHHcCChHHHHHHH
Q 003918 651 TKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKD----------VKAMCLKYAELEKSLGEIDRARGIY 720 (786)
Q Consensus 651 l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~----------~~~~~~~~~~~~~~~g~~~~A~~~~ 720 (786)
++..|+++.... .++..+...|++++|+..|+++++. .|+.. ...+|..++.++...|+.+.|..+.
T Consensus 274 l~~~p~~~~~~~--~l~~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 350 (365)
T 4eqf_A 274 LEIQPGFIRSRY--NLGISCINLGAYREAVSNFLTALSL-QRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAAN 350 (365)
T ss_dssp HHHCTTCHHHHH--HHHHHHHHHTCCHHHHHHHHHHHHH-HHCC------------CHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HhcCCCchHHHH--HHHHHHHHCCCHHHHHHHHHHHHHh-CcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 777776543333 3333344667777777777777776 44321 1346777777777777777777666
Q ss_pred HHHHc
Q 003918 721 VFASQ 725 (786)
Q Consensus 721 ~~al~ 725 (786)
.+.+.
T Consensus 351 ~~~l~ 355 (365)
T 4eqf_A 351 LGDLD 355 (365)
T ss_dssp TTCCG
T ss_pred HhhHH
Confidence 65444
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.91 E-value=5.8e-23 Score=218.37 Aligned_cols=283 Identities=16% Similarity=0.094 Sum_probs=237.1
Q ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHH
Q 003918 443 RVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYV 522 (786)
Q Consensus 443 ~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (786)
...+.+++...+.++......|+..+..+.+.|++++|+.+|++++...| ++..+|..++
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p--------------------~~~~~~~~lg 106 (365)
T 4eqf_A 47 VSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP--------------------GDAEAWQFLG 106 (365)
T ss_dssp ------CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--------------------TCHHHHHHHH
T ss_pred hHHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--------------------CCHHHHHHHH
Confidence 34455555555555422225689999999999999999999999999999 7889999999
Q ss_pred HHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHH----------H
Q 003918 523 DLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTY----------L 592 (786)
Q Consensus 523 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~----------~ 592 (786)
.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++. .|.+...|... +
T Consensus 107 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~ 184 (365)
T 4eqf_A 107 ITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMS 184 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHCC---------------
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998 57776666543 2
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHH
Q 003918 593 SKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAE 672 (786)
Q Consensus 593 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~ 672 (786)
..+ ...|++++|+..|+++++..|...+..++..+|.++...|++++|+..|+++++..|.++..+ ..++..+..
T Consensus 185 ~~~---~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--~~l~~~~~~ 259 (365)
T 4eqf_A 185 KSP---VDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLW--NRLGATLAN 259 (365)
T ss_dssp -------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH--HHHHHHHHH
T ss_pred HHH---hhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHH
Confidence 222 256889999999999999999854578999999999999999999999999999999865544 445555568
Q ss_pred hcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCC-----------CHHHHHHHHH
Q 003918 673 IFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRS-----------DTEFWNRWHE 741 (786)
Q Consensus 673 ~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~~-----------~~~~~~~~~~ 741 (786)
.|++++|+..|+++++. .|+ .+.++..+|.++...|++++|...|+++++. .|+. ....|..++.
T Consensus 260 ~g~~~~A~~~~~~al~~-~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~~~~~l~~ 335 (365)
T 4eqf_A 260 GDRSEEAVEAYTRALEI-QPG--FIRSRYNLGISCINLGAYREAVSNFLTALSL-QRKSRNQQQVPHPAISGNIWAALRI 335 (365)
T ss_dssp TTCHHHHHHHHHHHHHH-CTT--CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH-HHCC------------CHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhc-CCC--chHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcccCCCcccchhhhHHHHHHHHHH
Confidence 99999999999999999 888 4679999999999999999999999999997 4431 2588999999
Q ss_pred HHHHcCCHHHHHHHH
Q 003918 742 FEVNHGNEDTFREML 756 (786)
Q Consensus 742 ~~~~~G~~~~a~~~~ 756 (786)
.+...|+.+.+..+.
T Consensus 336 ~~~~~g~~~~a~~~~ 350 (365)
T 4eqf_A 336 ALSLMDQPELFQAAN 350 (365)
T ss_dssp HHHHHTCHHHHHHHH
T ss_pred HHHHcCcHHHHHHHH
Confidence 999999999998877
No 27
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.90 E-value=3.8e-22 Score=206.27 Aligned_cols=239 Identities=17% Similarity=0.327 Sum_probs=132.8
Q ss_pred CHHHHHHHHHhhcCC------c----hhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHH-------cCCh-------
Q 003918 384 NVEQWHRRVKIFEGN------P----TKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYET-------YKDI------- 439 (786)
Q Consensus 384 ~~~~~~~~~~~~~~~------~----~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~-------~~~~------- 439 (786)
....|..++.+...+ . ++|+..|++++. .+| .++.+|..+|.++.. .|++
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~-~~p-----~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~ 80 (308)
T 2ond_A 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLL-VLG-----HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFS 80 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHH-HHT-----TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHH-HcC-----CCHHHHHHHHHHHHHhchhhhhccchhhcccch
Confidence 344555555554322 1 345556666663 333 456666666665542 3554
Q ss_pred hHHHHHHHHHHh-ccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHH-H
Q 003918 440 ANARVIFDKAVQ-VNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLR-L 517 (786)
Q Consensus 440 ~~A~~~~~~al~-~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 517 (786)
++|+.+|++++. .+|++. .+|..++.++.+.|++++|+.+|+++++.+| .++. +
T Consensus 81 ~~A~~~~~rAl~~~~p~~~----~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--------------------~~~~~~ 136 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNM----LLYFAYADYEESRMKYEKVHSIYNRLLAIED--------------------IDPTLV 136 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHTSSS--------------------SCTHHH
T ss_pred HHHHHHHHHHHHHhCcccH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhccc--------------------cCccHH
Confidence 566666666665 455554 5666666666666666666666666666555 3333 5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHH-cccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Q 003918 518 WTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEE-HKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFV 596 (786)
Q Consensus 518 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~ 596 (786)
|..++.++...|++++|+.+|+++++..|.+..+|...+.+... .|++++|+.+|+++++. +|.++.+|..++..+.
T Consensus 137 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~ 214 (308)
T 2ond_A 137 YIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLS 214 (308)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHH
Confidence 66666666556666666666666666655555555555555433 45666666666666655 3555566655554332
Q ss_pred HHhCCCChHHHHHHHHHHHhhC--CccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 003918 597 KRYGKTKLERARELFENAVETA--PADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNH 657 (786)
Q Consensus 597 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~ 657 (786)
..|++++|+.+|+++++.. |.+....+|..++.++...|+.+.|..+++++++.+|++
T Consensus 215 ---~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 215 ---HLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp ---TTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred ---HCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccc
Confidence 3355666666666666541 211134556666666666666666666666666666653
No 28
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.90 E-value=5.9e-22 Score=204.83 Aligned_cols=243 Identities=14% Similarity=0.233 Sum_probs=211.8
Q ss_pred CcHHHHHHHHHHHHHc----CCh----hHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHh-------ccCH-------H
Q 003918 421 KPHTLWVAFAKLYETY----KDI----ANARVIFDKAVQVNYKTVDHLASIWCEWAEMELR-------HKNF-------K 478 (786)
Q Consensus 421 ~~~~~~~~~a~~~~~~----~~~----~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~-------~g~~-------~ 478 (786)
.....|..++.+..+. ++. ++|+.+|++++..+|+++ .+|..++.++.. .|++ +
T Consensus 6 ~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~----~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 81 (308)
T 2ond_A 6 QQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHP----DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSD 81 (308)
T ss_dssp HHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCH----HHHHHHHHHHHHhchhhhhccchhhcccchH
Confidence 4578999999987764 343 789999999999999998 999999999864 4775 9
Q ss_pred HHHHHHHHHhc-CCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHH-HHHHHH
Q 003918 479 GALELMRRATA-EPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQ-IIINYA 556 (786)
Q Consensus 479 ~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~~~ 556 (786)
+|+.+|++++. ++| ++..+|..++.++...|++++|+.+|+++++..|.++. +|..++
T Consensus 82 ~A~~~~~rAl~~~~p--------------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 141 (308)
T 2ond_A 82 EAANIYERAISTLLK--------------------KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYM 141 (308)
T ss_dssp HHHHHHHHHHTTTTT--------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCc--------------------ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHH
Confidence 99999999999 688 78899999999999999999999999999999999987 999999
Q ss_pred HHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHH
Q 003918 557 LLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEED 636 (786)
Q Consensus 557 ~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~ 636 (786)
.++.+.|++++|+.+|+++++. .|.+..+|...+.... . ..|++++|+.+|+++++..|+ +..+|..++.++..
T Consensus 142 ~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~-~-~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~ 215 (308)
T 2ond_A 142 KFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEY-Y-CSKDKSVAFKIFELGLKKYGD--IPEYVLAYIDYLSH 215 (308)
T ss_dssp HHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHH-H-TSCCHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHT
T ss_pred HHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH-H-HcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHH
Confidence 9999999999999999999997 5777788876442211 1 358899999999999999998 78999999999999
Q ss_pred cCCHHHHHHHHHHHHhcC--CCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCCh
Q 003918 637 YGLAKRAMKVYDQATKAV--PNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDK 694 (786)
Q Consensus 637 ~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~ 694 (786)
.|++++|+.+|++++..+ |++....+|..++..+...|+.+.|+.+++++++. .|++
T Consensus 216 ~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~-~p~~ 274 (308)
T 2ond_A 216 LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA-FREE 274 (308)
T ss_dssp TCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-TTTT
T ss_pred CCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-cccc
Confidence 999999999999999964 32235677888888888899999999999999999 8863
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.90 E-value=7.8e-22 Score=205.82 Aligned_cols=269 Identities=11% Similarity=0.047 Sum_probs=175.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccC
Q 003918 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADG 503 (786)
Q Consensus 424 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 503 (786)
..|+..|..+...|++++|+..|++++..+|+++ .+|..++.++...|++++|...|++++...|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~----------- 86 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPERE----EAWRSLGLTQAENEKDGLAIIALNHARMLDP----------- 86 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-----------
Confidence 4566777777777777777777777777777776 6777777777777777777777777777777
Q ss_pred ChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHH--------------HH-HHHHcccHHHH
Q 003918 504 NEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINY--------------AL-LLEEHKYFEDA 568 (786)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~--------------~~-~~~~~g~~~~A 568 (786)
.+...|..++.++...|++++|+..|++++...|.+...+..+ +. ++...|++++|
T Consensus 87 ---------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 157 (327)
T 3cv0_A 87 ---------KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYREC 157 (327)
T ss_dssp ---------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHH
T ss_pred ---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHH
Confidence 5667777777777777777777777777777777776666555 44 45556666666
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003918 569 FRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYD 648 (786)
Q Consensus 569 ~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~ 648 (786)
+..+++++.. .|.+..+|..++..+. ..|++++|...|+++++..|+ +..++..+|.++...|++++|...|+
T Consensus 158 ~~~~~~~~~~--~~~~~~~~~~la~~~~---~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~ 230 (327)
T 3cv0_A 158 RTLLHAALEM--NPNDAQLHASLGVLYN---LSNNYDSAAANLRRAVELRPD--DAQLWNKLGATLANGNRPQEALDAYN 230 (327)
T ss_dssp HHHHHHHHHH--STTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhh--CCCCHHHHHHHHHHHH---HhccHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6666666665 4656666655443332 235666666666666666666 45666666666666666666666666
Q ss_pred HHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCCh----------hHHHHHHHHHHHHHHcCChHHHHH
Q 003918 649 QATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDK----------DVKAMCLKYAELEKSLGEIDRARG 718 (786)
Q Consensus 649 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~----------~~~~~~~~~~~~~~~~g~~~~A~~ 718 (786)
++++..|.++.... ..+..+...|++++|+..|++++.. .|.. ....+|..++.++...|++++|..
T Consensus 231 ~a~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 307 (327)
T 3cv0_A 231 RALDINPGYVRVMY--NMAVSYSNMSQYDLAAKQLVRAIYM-QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVEL 307 (327)
T ss_dssp HHHHHCTTCHHHHH--HHHHHHHHTTCHHHHHHHHHHHHHH-HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHcCCCCHHHHH--HHHHHHHHhccHHHHHHHHHHHHHh-CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHH
Confidence 66666665433332 2333334566666666666666666 4441 024567777777777777777777
Q ss_pred HHHHHHcc
Q 003918 719 IYVFASQF 726 (786)
Q Consensus 719 ~~~~al~~ 726 (786)
+++++++.
T Consensus 308 ~~~~~l~~ 315 (327)
T 3cv0_A 308 TYAQNVEP 315 (327)
T ss_dssp HTTCCSHH
T ss_pred HHHHHHHh
Confidence 77766553
No 30
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.90 E-value=6.6e-22 Score=208.59 Aligned_cols=253 Identities=12% Similarity=0.120 Sum_probs=205.1
Q ss_pred CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccC-HHHHHHHHHHHhcCCchHHhhhh
Q 003918 421 KPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKN-FKGALELMRRATAEPSVEVRRRV 499 (786)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~ 499 (786)
.+..+|..++.++...|++++|+..|++++..+|++. .+|..++.++...|+ +++|+..|++++.+.|
T Consensus 95 ~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~----~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P------- 163 (382)
T 2h6f_A 95 KFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANY----TVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP------- 163 (382)
T ss_dssp HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-------
T ss_pred hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCH----HHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-------
Confidence 5778888999999999999999999999999999987 899999999999996 9999999999999988
Q ss_pred hccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhc
Q 003918 500 AADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIF 579 (786)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 579 (786)
++..+|..++.++..+|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|++++++
T Consensus 164 -------------~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l- 229 (382)
T 2h6f_A 164 -------------KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE- 229 (382)
T ss_dssp -------------TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH-
T ss_pred -------------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-
Confidence 788999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCChHHHHHHHHHHHHHHhCCCChHHH-----HHHHHHHHhhCCccCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHh
Q 003918 580 KYPHVKDIWVTYLSKFVKRYGKTKLERA-----RELFENAVETAPADAVKPLYLQYAKLEEDYG--LAKRAMKVYDQATK 652 (786)
Q Consensus 580 ~~p~~~~~~~~~~~~~~~~~~~~~~~~A-----~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g--~~~~A~~~~~~~l~ 652 (786)
+|.+..+|...+..+. .+ .|..++| +..|++++..+|+ +..+|..++.++...| ++++|++.+.++ +
T Consensus 230 -~P~~~~a~~~lg~~l~-~l-~~~~~eA~~~~el~~~~~Al~l~P~--~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~ 303 (382)
T 2h6f_A 230 -DVRNNSVWNQRYFVIS-NT-TGYNDRAVLEREVQYTLEMIKLVPH--NESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q 303 (382)
T ss_dssp -CTTCHHHHHHHHHHHH-HT-TCSCSHHHHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T
T ss_pred -CCCCHHHHHHHHHHHH-Hh-cCcchHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHccCccchHHHHHHHHHh-c
Confidence 7999999988664443 21 2444666 5889999999998 6788999998888877 578888888777 6
Q ss_pred cCCCCchhhHHHHHHHHHHHhc--------C-hhHHHHHHHHH-HHhcCCChhHHHHHHHHHHHHHH
Q 003918 653 AVPNHEKLGMYEIYIARAAEIF--------G-VPKTREIYEQA-IESGLPDKDVKAMCLKYAELEKS 709 (786)
Q Consensus 653 ~~p~~~~~~~~~~~~~~~~~~~--------~-~~~A~~~~~~a-l~~~~p~~~~~~~~~~~~~~~~~ 709 (786)
..|+++......+.+. .+.| + +++|+.+|+++ ++. .|. ....|..++..+..
T Consensus 304 ~~p~~~~al~~La~~~--~~~~~~~~~~~~~~~~~A~~~~~~l~~~~-DP~--r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 304 PSHSSPYLIAFLVDIY--EDMLENQCDNKEDILNKALELCEILAKEK-DTI--RKEYWRYIGRSLQS 365 (382)
T ss_dssp TTCCCHHHHHHHHHHH--HHHHHTTCSSHHHHHHHHHHHHHHHHHTT-CGG--GHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH--HHHhcccccchHHHHHHHHHHHHHHHHHh-Cch--hHHHHHHHHHHHHH
Confidence 6776544444433333 3332 2 47788888888 777 776 45677777765554
No 31
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.89 E-value=5.9e-22 Score=208.95 Aligned_cols=252 Identities=10% Similarity=0.127 Sum_probs=224.4
Q ss_pred hhcCCCCHHHHHHHHHhhc--CCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCC-hhHHHHHHHHHHhccC
Q 003918 378 LRQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKD-IANARVIFDKAVQVNY 454 (786)
Q Consensus 378 l~~~p~~~~~~~~~~~~~~--~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~p 454 (786)
+..+|.+..+|..++.++. |++++|+..|+++| .++| .+..+|..+|.++...|+ +++|+..|++++..+|
T Consensus 90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al-~l~P-----~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P 163 (382)
T 2h6f_A 90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAI-ELNA-----ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP 163 (382)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHH-HHCT-----TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHH-HhCc-----cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC
Confidence 6788999999999888885 89999999999999 4777 789999999999999997 9999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHH
Q 003918 455 KTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLEST 534 (786)
Q Consensus 455 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 534 (786)
++. .+|..++.++...|++++|+..|++++.+.| ++..+|..++.++...|++++|
T Consensus 164 ~~~----~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP--------------------~~~~a~~~lg~~~~~~g~~~eA 219 (382)
T 2h6f_A 164 KNY----QVWHHRRVLVEWLRDPSQELEFIADILNQDA--------------------KNYHAWQHRQWVIQEFKLWDNE 219 (382)
T ss_dssp TCH----HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT--------------------TCHHHHHHHHHHHHHHTCCTTH
T ss_pred CCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCc--------------------cCHHHHHHHHHHHHHcCChHHH
Confidence 998 9999999999999999999999999999999 8999999999999999999999
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHH-cccHHHH-----HHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHH
Q 003918 535 RAVYERILDLRIATPQIIINYALLLEE-HKYFEDA-----FRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERAR 608 (786)
Q Consensus 535 ~~~~~~al~~~p~~~~~~~~~~~~~~~-~g~~~~A-----~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~ 608 (786)
+..|+++++.+|+++.+|+.+|.++.. .|..++| +..|++++.+ +|++..+|..++..+. ..+.+++++|.
T Consensus 220 l~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~-~~g~~~~~~a~ 296 (382)
T 2h6f_A 220 LQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQ-DRGLSKYPNLL 296 (382)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHT-TTCGGGCHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHH-ccCccchHHHH
Confidence 999999999999999999999999999 5665777 5999999998 7999999998654443 22222689999
Q ss_pred HHHHHHHhhCCccCcHHHHHHHHHHHHHcC--------C-HHHHHHHHHHH-HhcCCCCchhhHHHH
Q 003918 609 ELFENAVETAPADAVKPLYLQYAKLEEDYG--------L-AKRAMKVYDQA-TKAVPNHEKLGMYEI 665 (786)
Q Consensus 609 ~~~~~al~~~p~~~~~~~~~~~a~~~~~~g--------~-~~~A~~~~~~~-l~~~p~~~~~~~~~~ 665 (786)
+.++++ +..|+ +..++..++.++...| + +++|+.+|+++ ++.+|....+|.+.+
T Consensus 297 ~~~~~~-~~~p~--~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~ 360 (382)
T 2h6f_A 297 NQLLDL-QPSHS--SPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIG 360 (382)
T ss_dssp HHHHHH-TTTCC--CHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHh-ccCCC--CHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 999998 88888 7889999999998874 2 59999999999 999998666555444
No 32
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.89 E-value=2.4e-19 Score=198.43 Aligned_cols=213 Identities=14% Similarity=0.090 Sum_probs=110.1
Q ss_pred CCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHH----cCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHH
Q 003918 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYET----YKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMEL 472 (786)
Q Consensus 397 ~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~ 472 (786)
+++++|+..|++++.. .++.++..+|.++.. .+++++|+..|++++... ++ ..+..++.++.
T Consensus 201 ~~~~~A~~~~~~a~~~--------~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~----~a~~~lg~~y~ 266 (490)
T 2xm6_A 201 RNDAISAQWYRKSATS--------GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG--NS----IAQFRLGYILE 266 (490)
T ss_dssp CCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT--CH----HHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CH----HHHHHHHHHHH
Confidence 3445555555555532 234455555555554 555555555555555432 22 44455555555
Q ss_pred h----ccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHc-----CChHHHHHHHHHHHh
Q 003918 473 R----HKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESL-----GNLESTRAVYERILD 543 (786)
Q Consensus 473 ~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~~~~A~~~~~~al~ 543 (786)
. .+++++|+.+|+++.+... +..+..++.++... +++++|+..|+++++
T Consensus 267 ~g~~~~~d~~~A~~~~~~a~~~~~----------------------~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~ 324 (490)
T 2xm6_A 267 QGLAGAKEPLKALEWYRKSAEQGN----------------------SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE 324 (490)
T ss_dssp HTTTSSCCHHHHHHHHHHHHTTTC----------------------HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCC----------------------HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh
Confidence 4 5555666666655554322 23444555555544 556666666666555
Q ss_pred hccCCHHHHHHHHHHHHHcc---cHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhhCC
Q 003918 544 LRIATPQIIINYALLLEEHK---YFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYG-KTKLERARELFENAVETAP 619 (786)
Q Consensus 544 ~~p~~~~~~~~~~~~~~~~g---~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~p 619 (786)
. .++.++..+|.++...| ++++|+..|+++++. .++.++..++..+..-.+ .+++++|...|+++++..
T Consensus 325 ~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~- 397 (490)
T 2xm6_A 325 Q--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG- 397 (490)
T ss_dssp T--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred c--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC-
Confidence 3 44555555665555544 555666666666553 234445544333221000 245566666666665542
Q ss_pred ccCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCC
Q 003918 620 ADAVKPLYLQYAKLEED----YGLAKRAMKVYDQATKAVP 655 (786)
Q Consensus 620 ~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~~l~~~p 655 (786)
+...+..++.++.. .+++++|...|+++++..|
T Consensus 398 ---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 398 ---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred ---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 23455556666555 5566666666666665553
No 33
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.89 E-value=3.4e-19 Score=197.19 Aligned_cols=278 Identities=10% Similarity=-0.032 Sum_probs=207.6
Q ss_pred CCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHH----cCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHH
Q 003918 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYET----YKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMEL 472 (786)
Q Consensus 397 ~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~ 472 (786)
+++++|+..|++++.. .++.++..+|.++.. .+++++|...|+++.... ++ ..+..++.++.
T Consensus 165 ~d~~~A~~~~~~a~~~--------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~----~a~~~lg~~y~ 230 (490)
T 2xm6_A 165 RDYVMAREWYSKAAEQ--------GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG--DE----LGQLHLADMYY 230 (490)
T ss_dssp CCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CH----HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC--CH----HHHHHHHHHHH
Confidence 5677888888888853 357788888888887 889999999999988653 34 67778888887
Q ss_pred h----ccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHH----cCChHHHHHHHHHHHhh
Q 003918 473 R----HKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEES----LGNLESTRAVYERILDL 544 (786)
Q Consensus 473 ~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~al~~ 544 (786)
. .+++++|+.+|++++...+ +..+..++.++.. .+++++|+..|+++.+.
T Consensus 231 ~g~g~~~~~~~A~~~~~~a~~~~~----------------------~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~ 288 (490)
T 2xm6_A 231 FGIGVTQDYTQSRVLFSQSAEQGN----------------------SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ 288 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHTTTC----------------------HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT
T ss_pred cCCCCCCCHHHHHHHHHHHHHCCC----------------------HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc
Confidence 6 7889999999999887644 4566677777777 78999999999998875
Q ss_pred ccCCHHHHHHHHHHHHHc-----ccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhhC
Q 003918 545 RIATPQIIINYALLLEEH-----KYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYG-KTKLERARELFENAVETA 618 (786)
Q Consensus 545 ~p~~~~~~~~~~~~~~~~-----g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~ 618 (786)
.++.++..++.++... +++++|+..|+++++. .++.++..++..+. ..+ .+++++|+..|+++++.
T Consensus 289 --~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~-~~g~~~~~~~A~~~~~~a~~~- 360 (490)
T 2xm6_A 289 --GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGAIYF-RLGSEEEHKKAVEWFRKAAAK- 360 (490)
T ss_dssp --TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHH-HSCCHHHHHHHHHHHHHHHHT-
T ss_pred --CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHH-hCCCcccHHHHHHHHHHHHHC-
Confidence 6788888999998887 8899999999999884 34556666544333 211 12688899999999887
Q ss_pred CccCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHH----hcChhHHHHHHHHHHHhc
Q 003918 619 PADAVKPLYLQYAKLEED----YGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAE----IFGVPKTREIYEQAIESG 690 (786)
Q Consensus 619 p~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~ 690 (786)
+ +...+..++.++.. .+++++|...|+++++.. ++......+.+. .. .+++++|+..|+++++.
T Consensus 361 -~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y--~~g~g~~~d~~~A~~~~~~A~~~- 432 (490)
T 2xm6_A 361 -G--EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIY--YYGLGVERDYVQAWAWFDTASTN- 432 (490)
T ss_dssp -T--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHH--HHTSSSCCCHHHHHHHHHHHHHH-
T ss_pred -C--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHH--HcCCCCCCCHHHHHHHHHHHHHC-
Confidence 2 46788889999888 789999999999988864 334444444443 34 67899999999999988
Q ss_pred CCC-hhHHHHHHHHHHHHHHcCC--hHHHHHHHHHHHcc
Q 003918 691 LPD-KDVKAMCLKYAELEKSLGE--IDRARGIYVFASQF 726 (786)
Q Consensus 691 ~p~-~~~~~~~~~~~~~~~~~g~--~~~A~~~~~~al~~ 726 (786)
.|+ +.++.+...++.++..... .+.|+.+|+++...
T Consensus 433 ~~~~~~~~~a~~~l~~~~~~~~~~a~~~a~~~~~~~~~~ 471 (490)
T 2xm6_A 433 DMNLFGTENRNITEKKLTAKQLQQAELLSQQYIEKYAPE 471 (490)
T ss_dssp HCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHCHH
T ss_pred CCCCcCCHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHH
Confidence 533 2245577777776555433 34588888887653
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.88 E-value=6e-21 Score=199.08 Aligned_cols=263 Identities=13% Similarity=0.028 Sum_probs=230.6
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003918 462 SIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERI 541 (786)
Q Consensus 462 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 541 (786)
..|+..+..+...|++++|+.+|++++...| ++..+|..++.++...|++++|...|+++
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 81 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAP--------------------EREEAWRSLGLTQAENEKDGLAIIALNHA 81 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5678889999999999999999999999988 78899999999999999999999999999
Q ss_pred HhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHH--------------HH-HHHHHhCCCChHH
Q 003918 542 LDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTY--------------LS-KFVKRYGKTKLER 606 (786)
Q Consensus 542 l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~--------------~~-~~~~~~~~~~~~~ 606 (786)
++.+|+++.++..+|.++...|++++|+..+++++.. +|.+...+... +. .+ ...|++++
T Consensus 82 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 156 (327)
T 3cv0_A 82 RMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLS--QPQYEQLGSVNLQADVDIDDLNVQSEDFFF---AAPNEYRE 156 (327)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STTTTTC--------------------CCT---TSHHHHHH
T ss_pred HhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHHHHHHHHHHHHHhHHH---HHcccHHH
Confidence 9999999999999999999999999999999999997 57776666543 11 11 13478999
Q ss_pred HHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHH
Q 003918 607 ARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQA 686 (786)
Q Consensus 607 A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 686 (786)
|+..|+++++..|. +..++..+|.++...|++++|...++++++..|.++.... ..+..+...|++++|+..|+++
T Consensus 157 A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 157 CRTLLHAALEMNPN--DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWN--KLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH--HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCC--CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH--HHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999998 6889999999999999999999999999999998654444 4444456789999999999999
Q ss_pred HHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCC-----------CHHHHHHHHHHHHHcCCHHHHHHH
Q 003918 687 IESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRS-----------DTEFWNRWHEFEVNHGNEDTFREM 755 (786)
Q Consensus 687 l~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~~-----------~~~~~~~~~~~~~~~G~~~~a~~~ 755 (786)
+.. .|. ...++..++.++...|++++|..+|++++.. .|+. ....|..++..+...|+.++|..+
T Consensus 233 ~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 308 (327)
T 3cv0_A 233 LDI-NPG--YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM-QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELT 308 (327)
T ss_dssp HHH-CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHc-CCC--CHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 999 887 4668999999999999999999999999997 5662 478999999999999999999999
Q ss_pred HH
Q 003918 756 LR 757 (786)
Q Consensus 756 ~~ 757 (786)
++
T Consensus 309 ~~ 310 (327)
T 3cv0_A 309 YA 310 (327)
T ss_dssp TT
T ss_pred HH
Confidence 84
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.87 E-value=1.2e-20 Score=183.87 Aligned_cols=199 Identities=16% Similarity=0.123 Sum_probs=170.7
Q ss_pred CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhh
Q 003918 421 KPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVA 500 (786)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 500 (786)
.++.+|..+|..+...|++++|+..|+++++.+|+++ .+|..++.++.+.|++++|+..|+++++..|
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-------- 70 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDP----EALYWLARTQLKLGLVNPALENGKTLVARTP-------- 70 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------
Confidence 4678999999999999999999999999999999998 9999999999999999999999999999999
Q ss_pred ccCChhHHHHhhhcHHHHHHHHHHHHHc-----------CChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHH
Q 003918 501 ADGNEPVQMKLHKSLRLWTFYVDLEESL-----------GNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAF 569 (786)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~ 569 (786)
+++..|..++.++... |++++|+..|+++++.+|+++.+|..+|.++...|++++|+
T Consensus 71 ------------~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~ 138 (217)
T 2pl2_A 71 ------------RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAE 138 (217)
T ss_dssp ------------TCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ------------CcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHH
Confidence 7889999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003918 570 RVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQ 649 (786)
Q Consensus 570 ~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 649 (786)
..|+++++. + +++.+|..++..+.. .|++++|+..|+++++..|+ +..++..++.++...|++++|+..|++
T Consensus 139 ~~~~~al~~--~-~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~P~--~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 139 ASLKQALAL--E-DTPEIRSALAELYLS---MGRLDEALAQYAKALEQAPK--DLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHH--C-CCHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHhc--c-cchHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999998 5 788888887655543 38899999999999999999 788999999999999999999999987
Q ss_pred HH
Q 003918 650 AT 651 (786)
Q Consensus 650 ~l 651 (786)
+-
T Consensus 211 ~~ 212 (217)
T 2pl2_A 211 EH 212 (217)
T ss_dssp --
T ss_pred Hh
Confidence 64
No 36
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.87 E-value=1.7e-20 Score=190.19 Aligned_cols=263 Identities=11% Similarity=0.076 Sum_probs=194.5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhcc
Q 003918 423 HTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAAD 502 (786)
Q Consensus 423 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 502 (786)
+..++.+|..+...|++++|+..|+++++.+|+++ .+|..++.++...|++++|+..|++++..++..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------- 70 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSP----YIYNRRAVCYYELAKYDLAQKDIETYFSKVNAT-------- 70 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCS----TTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTT--------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhccCch--------
Confidence 45678899999999999999999999999999987 788999999999999999999999999844310
Q ss_pred CChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCC
Q 003918 503 GNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYP 582 (786)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p 582 (786)
......|..+|.++...|++++|+..|+++++.+|.++.+|..+|.++...|++++|+..|+++++. +|
T Consensus 71 ---------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~ 139 (272)
T 3u4t_A 71 ---------KAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TT 139 (272)
T ss_dssp ---------TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SC
T ss_pred ---------hHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CC
Confidence 0124568888999999999999999999999999999999999999999999999999999999997 68
Q ss_pred ChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCch
Q 003918 583 HVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGL---AKRAMKVYDQATKAVPNHEK 659 (786)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~---~~~A~~~~~~~l~~~p~~~~ 659 (786)
.++.+|..++...+. .+++++|+..|+++++..|+ +...+..++.++...|+ +++|...|+++++.....+.
T Consensus 140 ~~~~~~~~l~~~~~~---~~~~~~A~~~~~~a~~~~p~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 214 (272)
T 3u4t_A 140 TDPKVFYELGQAYYY---NKEYVKADSSFVKVLELKPN--IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGA 214 (272)
T ss_dssp CCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGG
T ss_pred CcHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhCcc--chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccc
Confidence 888888876523332 25889999999999999888 56777778877776666 66666666666654421111
Q ss_pred hhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCCCHHHHHHH
Q 003918 660 LGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRW 739 (786)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~ 739 (786)
.. ......++..+|.++...|++++|..+|+++++. +|+ +...+..+
T Consensus 215 ~~-------------------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~p~-~~~a~~~l 261 (272)
T 3u4t_A 215 KY-------------------------------KDELIEANEYIAYYYTINRDKVKADAAWKNILAL-DPT-NKKAIDGL 261 (272)
T ss_dssp GG-------------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT-CHHHHHHH
T ss_pred cc-------------------------------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-Ccc-HHHHHHHh
Confidence 00 0001235555666666666666666666666665 566 46666655
Q ss_pred HHHHHHc
Q 003918 740 HEFEVNH 746 (786)
Q Consensus 740 ~~~~~~~ 746 (786)
.......
T Consensus 262 ~~~~~~~ 268 (272)
T 3u4t_A 262 KMKLEHH 268 (272)
T ss_dssp C------
T ss_pred hhhhccc
Confidence 5544433
No 37
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.85 E-value=4.9e-20 Score=186.71 Aligned_cols=244 Identities=11% Similarity=0.000 Sum_probs=193.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCCh-HHHHHHHHH
Q 003918 515 LRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHV-KDIWVTYLS 593 (786)
Q Consensus 515 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~-~~~~~~~~~ 593 (786)
+..+..++.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++....+|.. ..+|..++.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 3556778888889999999999999999999999999999999999999999999999999984222322 344666554
Q ss_pred HHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHh
Q 003918 594 KFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEI 673 (786)
Q Consensus 594 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~ 673 (786)
.+. ..|++++|+..|+++++..|. +..+|..+|.++...|++++|+..|+++++..|.++......+... ...
T Consensus 83 ~~~---~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~--~~~ 155 (272)
T 3u4t_A 83 ILM---KKGQDSLAIQQYQAAVDRDTT--RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAY--YYN 155 (272)
T ss_dssp HHH---HTTCHHHHHHHHHHHHHHSTT--CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHH--HHT
T ss_pred HHH---HcccHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHH--HHH
Confidence 443 348899999999999999998 5688999999999999999999999999999888665555554222 235
Q ss_pred cChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHccC--CCCC----CHHHHHHHHHHHH
Q 003918 674 FGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGE---IDRARGIYVFASQFA--DPRS----DTEFWNRWHEFEV 744 (786)
Q Consensus 674 ~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~---~~~A~~~~~~al~~~--~p~~----~~~~~~~~~~~~~ 744 (786)
+++++|+..|+++++. .|+ ....+..++.++...|+ +++|...|+++++.. .|+. ....|..++.++.
T Consensus 156 ~~~~~A~~~~~~a~~~-~p~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 232 (272)
T 3u4t_A 156 KEYVKADSSFVKVLEL-KPN--IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYT 232 (272)
T ss_dssp TCHHHHHHHHHHHHHH-STT--CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-Ccc--chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 6999999999999999 888 46688889999998888 888999999999862 1321 1368888999999
Q ss_pred HcCCHHHHHHHHHHHHHHHhhhhhhH
Q 003918 745 NHGNEDTFREMLRIKRSVSASYSQVI 770 (786)
Q Consensus 745 ~~G~~~~a~~~~~~~~~~~~~~~~~~ 770 (786)
..|+.++|.+.++ +.+...|++..
T Consensus 233 ~~~~~~~A~~~~~--~al~~~p~~~~ 256 (272)
T 3u4t_A 233 INRDKVKADAAWK--NILALDPTNKK 256 (272)
T ss_dssp HTTCHHHHHHHHH--HHHHHCTTCHH
T ss_pred HcCCHHHHHHHHH--HHHhcCccHHH
Confidence 9999999999995 44444554443
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.85 E-value=8e-20 Score=178.04 Aligned_cols=198 Identities=17% Similarity=0.104 Sum_probs=168.9
Q ss_pred CCCHHHHHHHHHhhc--CCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhh
Q 003918 382 PHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDH 459 (786)
Q Consensus 382 p~~~~~~~~~~~~~~--~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 459 (786)
|.++..|..++..+. |++++|+..|++++ ..+| .++.+|..+|.++...|++++|+..|+++++.+|+++
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p-----~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~-- 73 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERAL-KENP-----QDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYL-- 73 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHH-TTSS-----SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--
Confidence 677788888887774 99999999999999 5777 7899999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHhc-----------cCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHc
Q 003918 460 LASIWCEWAEMELRH-----------KNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESL 528 (786)
Q Consensus 460 ~~~~~~~~a~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (786)
..|..++.++... |++++|+..|+++++..| +++.+|..++.++...
T Consensus 74 --~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P--------------------~~~~~~~~lg~~~~~~ 131 (217)
T 2pl2_A 74 --GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP--------------------RYAPLHLQRGLVYALL 131 (217)
T ss_dssp --HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT--------------------TCHHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc--------------------ccHHHHHHHHHHHHHc
Confidence 8999999999999 999999999999999999 7889999999999999
Q ss_pred CChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHH
Q 003918 529 GNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERAR 608 (786)
Q Consensus 529 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~ 608 (786)
|++++|+..|+++++.+ +++.++..+|.++...|++++|+..|+++++. +|+++.++..++..+. ..|++++|+
T Consensus 132 g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~---~~g~~~~A~ 205 (217)
T 2pl2_A 132 GERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALL---LKGKAEEAA 205 (217)
T ss_dssp TCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHT---C--------
T ss_pred CChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHH---HccCHHHHH
Confidence 99999999999999999 99999999999999999999999999999998 7999999988665443 568999999
Q ss_pred HHHHHHH
Q 003918 609 ELFENAV 615 (786)
Q Consensus 609 ~~~~~al 615 (786)
..|+++-
T Consensus 206 ~~~~~~~ 212 (217)
T 2pl2_A 206 RAAALEH 212 (217)
T ss_dssp -------
T ss_pred HHHHHHh
Confidence 9998763
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.84 E-value=4.5e-19 Score=177.81 Aligned_cols=234 Identities=14% Similarity=0.099 Sum_probs=178.6
Q ss_pred cHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhc
Q 003918 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAA 501 (786)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 501 (786)
....|..+|..+...|++++|+..|++++..+ .++ .+|..++.++...|++++|+..|++++...|...
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~----~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~------ 72 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDI----TYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR------ 72 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCT----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccH----HHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc------
Confidence 46788999999999999999999999999998 666 8999999999999999999999999998777100
Q ss_pred cCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCC
Q 003918 502 DGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKY 581 (786)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~ 581 (786)
......+.+|..++.++...|++++|+..|++++...|. +.++...|++++|+..+++++.. +
T Consensus 73 -------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~--~ 135 (258)
T 3uq3_A 73 -------ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYV--N 135 (258)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHC--C
T ss_pred -------cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHc--C
Confidence 000011577888888888888888888888888888775 34566667778888888888875 5
Q ss_pred CChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhh
Q 003918 582 PHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLG 661 (786)
Q Consensus 582 p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 661 (786)
|.+..+|..++..+. ..|++++|...|+++++..|. +..++..+|.++...|++++|...++++++..|+++...
T Consensus 136 ~~~~~~~~~~~~~~~---~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 210 (258)
T 3uq3_A 136 PEKAEEARLEGKEYF---TKSDWPNAVKAYTEMIKRAPE--DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAY 210 (258)
T ss_dssp HHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cchHHHHHHHHHHHH---HhcCHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHH
Confidence 777777776554443 346788888888888888777 567777788888778888888888888887777654443
Q ss_pred HHHHHHHHHHHhcChhHHHHHHHHHHHhcC
Q 003918 662 MYEIYIARAAEIFGVPKTREIYEQAIESGL 691 (786)
Q Consensus 662 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 691 (786)
...+ ..+...|++++|+..|+++++. .
T Consensus 211 ~~l~--~~~~~~g~~~~A~~~~~~a~~~-~ 237 (258)
T 3uq3_A 211 IRKA--TAQIAVKEYASALETLDAARTK-D 237 (258)
T ss_dssp HHHH--HHHHHTTCHHHHHHHHHHHHHH-H
T ss_pred HHHH--HHHHHHhhHHHHHHHHHHHHHh-C
Confidence 3333 3334677777777777777777 5
No 40
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.84 E-value=1.2e-18 Score=177.64 Aligned_cols=255 Identities=11% Similarity=0.036 Sum_probs=207.7
Q ss_pred HhhcCCchhHHHHHHHHHhccCCCccCCCc-HHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHH
Q 003918 393 KIFEGNPTKQILTYTEAVRTVDPMKAVGKP-HTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEME 471 (786)
Q Consensus 393 ~~~~~~~~~a~~~~~~al~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~ 471 (786)
.++.|++..|+..+++.. ..+| ++ ......++..+...|+++.|+..++.. +|.+. ..+..++.++
T Consensus 9 ~~~~g~y~~ai~~~~~~~-~~~p-----~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~~~~----~a~~~la~~~ 75 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVK-PSSP-----ERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAPEL----QAVRMFAEYL 75 (291)
T ss_dssp HHHTTCHHHHHHHHHHSC-CCSH-----HHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SCHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc-cCCc-----hhhHHHHHHHHHHHHHCCCHHHHHHHhccc---CChhH----HHHHHHHHHH
Confidence 455699999999988755 3444 23 457778899999999999999877652 33222 6778888999
Q ss_pred HhccCHHHHHHHHHHHhcC--CchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCH
Q 003918 472 LRHKNFKGALELMRRATAE--PSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATP 549 (786)
Q Consensus 472 ~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 549 (786)
...|+.++|++.+++++.. .| +++.++..+|.++...|++++|+..|++ |+++
T Consensus 76 ~~~~~~~~A~~~l~~ll~~~~~P--------------------~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~ 130 (291)
T 3mkr_A 76 ASHSRRDAIVAELDREMSRSVDV--------------------TNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSL 130 (291)
T ss_dssp HCSTTHHHHHHHHHHHHHSCCCC--------------------SCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSH
T ss_pred cCCCcHHHHHHHHHHHHhcccCC--------------------CCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCH
Confidence 9999999999999998864 57 6788999999999999999999999998 8999
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHH--HHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHH
Q 003918 550 QIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVT--YLSKFVKRYGKTKLERARELFENAVETAPADAVKPLY 627 (786)
Q Consensus 550 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~--~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 627 (786)
.++..++.++...|++++|++.|+++++. +|++...... ++... .+.|++++|..+|+++++..|+ +..++
T Consensus 131 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~l~~a~~~l~---~~~~~~~eA~~~~~~~l~~~p~--~~~~~ 203 (291)
T 3mkr_A 131 ECMAMTVQILLKLDRLDLARKELKKMQDQ--DEDATLTQLATAWVSLA---AGGEKLQDAYYIFQEMADKCSP--TLLLL 203 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHSCC--CHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHH---hCchHHHHHHHHHHHHHHhCCC--cHHHH
Confidence 99999999999999999999999999997 5776533221 11111 2568899999999999999998 78899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhH-HHHHHHHHHHhcCCChh
Q 003918 628 LQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPK-TREIYEQAIESGLPDKD 695 (786)
Q Consensus 628 ~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~-A~~~~~~al~~~~p~~~ 695 (786)
..+|.++...|++++|...|+++++..|+++......+.+. ...|+.++ +.++++++++. .|++.
T Consensus 204 ~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~--~~~g~~~eaa~~~~~~~~~~-~P~~~ 269 (291)
T 3mkr_A 204 NGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLS--QHLGKPPEVTNRYLSQLKDA-HRSHP 269 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH--HHTTCCHHHHHHHHHHHHHH-CTTCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--HHcCCCHHHHHHHHHHHHHh-CCCCh
Confidence 99999999999999999999999999998777665555444 46788865 67899999999 88843
No 41
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.83 E-value=1.4e-18 Score=177.07 Aligned_cols=273 Identities=8% Similarity=0.032 Sum_probs=217.4
Q ss_pred HHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHh
Q 003918 432 LYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKL 511 (786)
Q Consensus 432 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 511 (786)
-....|++..|+..+++....+|++. ......++..+...|+++.|+..++.. .|
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~---~e~~~~l~r~yi~~g~~~~al~~~~~~---~~------------------- 62 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERD---VERDVFLYRAYLAQRKYGVVLDEIKPS---SA------------------- 62 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHH---HHHHHHHHHHHHHTTCHHHHHHHSCTT---SC-------------------
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhh---HHHHHHHHHHHHHCCCHHHHHHHhccc---CC-------------------
Confidence 34568999999999998877666542 256677788999999999999877652 44
Q ss_pred hhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHH
Q 003918 512 HKSLRLWTFYVDLEESLGNLESTRAVYERILDL--RIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWV 589 (786)
Q Consensus 512 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~ 589 (786)
.....+..++.++...|+.++|++.|++++.. +|+++.+++.+|.++...|++++|++.+++ |.++.++.
T Consensus 63 -~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~ 134 (291)
T 3mkr_A 63 -PELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMA 134 (291)
T ss_dssp -HHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHH
T ss_pred -hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHH
Confidence 35677778888888999999999999999976 599999999999999999999999999986 67788888
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHH--HHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHH
Q 003918 590 TYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYL--QYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYI 667 (786)
Q Consensus 590 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~--~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 667 (786)
..+..+. ..|++++|+..|+++++..|+ +..... .+..+....|++++|..+|+++++.+|+++. .+...+
T Consensus 135 ~l~~~~~---~~g~~~~A~~~l~~~~~~~p~--~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~--~~~~la 207 (291)
T 3mkr_A 135 MTVQILL---KLDRLDLARKELKKMQDQDED--ATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLL--LLNGQA 207 (291)
T ss_dssp HHHHHHH---HTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHH--HHHHHH
T ss_pred HHHHHHH---HCCCHHHHHHHHHHHHhhCcC--cHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHH--HHHHHH
Confidence 7665444 358999999999999999998 433333 2334555568999999999999999998544 444445
Q ss_pred HHHHHhcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHH-HHHHHHHHHccCCCCCCHHHHHHHHHHHHHc
Q 003918 668 ARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDR-ARGIYVFASQFADPRSDTEFWNRWHEFEVNH 746 (786)
Q Consensus 668 ~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~-A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~ 746 (786)
..+.+.|++++|...|++++.. .|+ ++.++..++.++...|+..+ +..+++++++. +|+ ++.+.. +..+.
T Consensus 208 ~~~~~~g~~~eA~~~l~~al~~-~p~--~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~-~P~-~~~~~d----~~~~~ 278 (291)
T 3mkr_A 208 ACHMAQGRWEAAEGVLQEALDK-DSG--HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA-HRS-HPFIKE----YRAKE 278 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-CTT--CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-CTT-CHHHHH----HHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh-CCC--CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-CCC-ChHHHH----HHHHH
Confidence 5556899999999999999999 898 56799999999999999976 67899999997 788 455433 34444
Q ss_pred CCHHHHH
Q 003918 747 GNEDTFR 753 (786)
Q Consensus 747 G~~~~a~ 753 (786)
+.++++.
T Consensus 279 ~~fd~~~ 285 (291)
T 3mkr_A 279 NDFDRLV 285 (291)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4454443
No 42
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.83 E-value=1e-15 Score=176.25 Aligned_cols=402 Identities=12% Similarity=0.078 Sum_probs=252.6
Q ss_pred hhHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHhcCCChHHH
Q 003918 82 PEYETLNNTFERALVTMH---KMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETS 158 (786)
Q Consensus 82 ~~~~~A~~~~~~al~~~p---~~~~~w~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~w~~~~~~~~~~~~~~~~A 158 (786)
|.+.+|..+|++++-... +|..+...++....+. +..+...+..+.=..+ ....+..+...|.+ ++|
T Consensus 999 glp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d--------~~eIA~Iai~lgly-EEA 1068 (1630)
T 1xi4_A 999 DLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD--------APDIANIAISNELF-EEA 1068 (1630)
T ss_pred CCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc--------HHHHHHHHHhCCCH-HHH
Confidence 566666666666663211 2444444444444433 2222222222211100 12234455556666 777
Q ss_pred HHHHHHHHccCCCCHHHHHHHHHhcCCHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHhcccccccCCcHHHHHH
Q 003918 159 LRVYRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLTTHATEISGLNVDAIIR 238 (786)
Q Consensus 159 ~~~~~~~l~~~p~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (786)
..+|+++- .+..+.-.++...|++++|.++++++- .+.+|..++......+...+ +...+.
T Consensus 1069 f~IYkKa~----~~~~A~~VLie~i~nldrAiE~Aervn------------~p~vWsqLAKAql~~G~~kE---AIdsYi 1129 (1630)
T 1xi4_A 1069 FAIFRKFD----VNTSAVQVLIEHIGNLDRAYEFAERCN------------EPAVWSQLAKAQLQKGMVKE---AIDSYI 1129 (1630)
T ss_pred HHHHHHcC----CHHHHHHHHHHHHhhHHHHHHHHHhcC------------CHHHHHHHHHHHHhCCCHHH---HHHHHH
Confidence 77777752 111222233336677777777766552 24467777666665544321 111222
Q ss_pred hhhhccCchhHHHHHHHHHHHHhhccHHHHHHHHHHHhhccCchhcHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccc
Q 003918 239 GGIRKFTDEVGRLWTSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIFDSYSQFEEIMVSAKMAKPDLSVEEEEDDE 318 (786)
Q Consensus 239 ~~~~~~p~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (786)
++ ++ +..|..+|..+.+.|++++|.+.|..+.+..+.+.-...+..+|....
T Consensus 1130 KA-----dD-~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~---------------------- 1181 (1630)
T 1xi4_A 1130 KA-----DD-PSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTN---------------------- 1181 (1630)
T ss_pred hc-----CC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhc----------------------
Confidence 21 22 556777777777777777777777776665433211111111111110
Q ss_pred ccCCcchhhhHhhhhhhHHHHHHhHhcccccCccchHHHHHHHHHhhhhhchhhhhhhhhhcCCCCHHHHHHHHHhhc--
Q 003918 319 EHGSAEDEDIRLDVNLSMAEFVKKVLNGFWLHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFE-- 396 (786)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~-- 396 (786)
++..++. .+ ...+...|...|..+.
T Consensus 1182 ---------------------------------------rleele~------------fI--~~~n~ad~~~iGd~le~e 1208 (1630)
T 1xi4_A 1182 ---------------------------------------RLAELEE------------FI--NGPNNAHIQQVGDRCYDE 1208 (1630)
T ss_pred ---------------------------------------CHHHHHH------------HH--hCCCHHHHHHHHHHHHhc
Confidence 0001111 01 2334456777777775
Q ss_pred CCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccC
Q 003918 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKN 476 (786)
Q Consensus 397 ~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~ 476 (786)
|++++|...|..+ ..|..++..+.+.|++++|++.++++ .++ ..|...+..+...|+
T Consensus 1209 g~YeeA~~~Y~kA--------------~ny~rLA~tLvkLge~q~AIEaarKA-----~n~----~aWkev~~acve~~E 1265 (1630)
T 1xi4_A 1209 KMYDAAKLLYNNV--------------SNFGRLASTLVHLGEYQAAVDGARKA-----NST----RTWKEVCFACVDGKE 1265 (1630)
T ss_pred CCHHHHHHHHHhh--------------hHHHHHHHHHHHhCCHHHHHHHHHHh-----CCH----HHHHHHHHHHhhhhH
Confidence 8899999999984 26889999999999999999999998 233 889999999999999
Q ss_pred HHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHH
Q 003918 477 FKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYA 556 (786)
Q Consensus 477 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 556 (786)
+..|..+... +...| .....++..|...|.+++|+.+|++++..+|.+..+|..++
T Consensus 1266 f~LA~~cgl~-Iiv~~-----------------------deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELa 1321 (1630)
T 1xi4_A 1266 FRLAQMCGLH-IVVHA-----------------------DELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELA 1321 (1630)
T ss_pred HHHHHHHHHh-hhcCH-----------------------HHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHH
Confidence 9999987774 44444 44447788899999999999999999999999999999998
Q ss_pred HHHHHc--ccHHHHHHHHHHHHhhcCCC-----ChHHHHHHHHHHHHHHhCCCChHHHHHHHH-------------HHHh
Q 003918 557 LLLEEH--KYFEDAFRVYERGVKIFKYP-----HVKDIWVTYLSKFVKRYGKTKLERARELFE-------------NAVE 616 (786)
Q Consensus 557 ~~~~~~--g~~~~A~~~~~~al~~~~~p-----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~-------------~al~ 616 (786)
.++.+- ++..++++.|...+.+ .| .+..+|.... .++.+ .++++.|....- ..+.
T Consensus 1322 iLyaKy~peklmEhlk~f~~rini--~k~~r~~e~~~lW~elv-~LY~~--~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~ 1396 (1630)
T 1xi4_A 1322 ILYSKFKPQKMREHLELFWSRVNI--PKVLRAAEQAHLWAELV-FLYDK--YEEYDNAIITMMNHPTDAWKEGQFKDIIT 1396 (1630)
T ss_pred HHHHhCCHHHHHHHHHHHHHhccc--chHhHHHHHHHHHHHHH-HHHHh--cccHHHHHHHHHhccHhhhhhHHHHHHhc
Confidence 888764 6788999999988876 23 5677898854 45544 378998884333 2222
Q ss_pred hCCccCcHHHHHHHHHHHHHcC---------------CHHHHHHHHH
Q 003918 617 TAPADAVKPLYLQYAKLEEDYG---------------LAKRAMKVYD 648 (786)
Q Consensus 617 ~~p~~~~~~~~~~~a~~~~~~g---------------~~~~A~~~~~ 648 (786)
. +. +++++...+.++...+ ++++++.+|.
T Consensus 1397 k-v~--n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1397 K-VA--NVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred c-cc--cHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 2 33 5789999999998777 7777777776
No 43
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.83 E-value=4.8e-19 Score=190.77 Aligned_cols=311 Identities=11% Similarity=0.050 Sum_probs=244.1
Q ss_pred CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhh
Q 003918 421 KPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVA 500 (786)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 500 (786)
.....+...|..+...|++++|+..|++++...|.++.....+|..++.++...|++++|+..|++++......
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------ 80 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI------ 80 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc------
Confidence 45677889999999999999999999999999999876666889999999999999999999999998653200
Q ss_pred ccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCC------HHHHHHHHHHHHHccc----------
Q 003918 501 ADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIAT------PQIIINYALLLEEHKY---------- 564 (786)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~g~---------- 564 (786)
........++..++.++...|++++|...|+++++..|.. +.++..+|.++...|+
T Consensus 81 --------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~ 152 (406)
T 3sf4_A 81 --------GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDV 152 (406)
T ss_dssp --------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------
T ss_pred --------cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchh
Confidence 0000346788889999999999999999999999986643 4589999999999999
Q ss_pred ----------HHHHHHHHHHHHhhcCC----CChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCc----HHH
Q 003918 565 ----------FEDAFRVYERGVKIFKY----PHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAV----KPL 626 (786)
Q Consensus 565 ----------~~~A~~~~~~al~~~~~----p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~ 626 (786)
+++|+..+++++..... |....++...+..+. ..|++++|...|+++++..|...+ ..+
T Consensus 153 ~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 229 (406)
T 3sf4_A 153 GEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHY---LLGNFRDAVIAHEQRLLIAKEFGDKAAERRA 229 (406)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---HHTBHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHH---HccCHHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 99999999999886321 222345555443333 338899999999999998655222 348
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch----hhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCC----hhHHH
Q 003918 627 YLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEK----LGMYEIYIARAAEIFGVPKTREIYEQAIESGLPD----KDVKA 698 (786)
Q Consensus 627 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~----~~~~~ 698 (786)
+..+|.++...|++++|...++++++..|.... ...+...+..+...|++++|..+|++++.. .+. .....
T Consensus 230 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~ 308 (406)
T 3sf4_A 230 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI-AQELNDRIGEGR 308 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH-HHhcCCcHHHHH
Confidence 889999999999999999999999987765322 234445555667889999999999999986 332 11356
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHccCC----CCCCHHHHHHHHHHHHHcCCH
Q 003918 699 MCLKYAELEKSLGEIDRARGIYVFASQFAD----PRSDTEFWNRWHEFEVNHGNE 749 (786)
Q Consensus 699 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~~----p~~~~~~~~~~~~~~~~~G~~ 749 (786)
++..+|.++...|++++|..+|+++++... +......+..++..+...|+.
T Consensus 309 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 309 ACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 888999999999999999999999998621 111256677788888888865
No 44
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.83 E-value=2.1e-18 Score=172.80 Aligned_cols=237 Identities=14% Similarity=0.067 Sum_probs=202.4
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 003918 461 ASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYER 540 (786)
Q Consensus 461 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 540 (786)
...|..+|..+...|++++|+.+|++++.... ++.+|..++.++...|++++|+..|++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~---------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~ 63 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHK---------------------DITYLNNRAAAEYEKGEYETAISTLND 63 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC---------------------CTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhc---------------------cHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 47889999999999999999999999986554 457888999999999999999999999
Q ss_pred HHhhccCC-------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 003918 541 ILDLRIAT-------PQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFEN 613 (786)
Q Consensus 541 al~~~p~~-------~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 613 (786)
+++..|++ +.++..+|.++...|++++|+..|++++.. .|. ...+.. .|++++|...+++
T Consensus 64 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~-~~~~~~----------~~~~~~a~~~~~~ 130 (258)
T 3uq3_A 64 AVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRT-ADILTK----------LRNAEKELKKAEA 130 (258)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCC-HHHHHH----------HHHHHHHHHHHHH
T ss_pred HHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cch-hHHHHH----------HhHHHHHHHHHHH
Confidence 99998877 789999999999999999999999999997 454 222211 2568999999999
Q ss_pred HHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCC
Q 003918 614 AVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPD 693 (786)
Q Consensus 614 al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~ 693 (786)
++...|. +..++..+|.++...|++++|+..|+++++..|.++..... .+..+...|++++|+..|++++.. .|+
T Consensus 131 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~--l~~~~~~~~~~~~A~~~~~~al~~-~~~ 205 (258)
T 3uq3_A 131 EAYVNPE--KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSN--RAAALAKLMSFPEAIADCNKAIEK-DPN 205 (258)
T ss_dssp HHHCCHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH--HHHHHHHTTCHHHHHHHHHHHHHH-CTT
T ss_pred HHHcCcc--hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHH--HHHHHHHhCCHHHHHHHHHHHHHh-CHH
Confidence 9999998 78899999999999999999999999999999986544444 444456889999999999999999 887
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCC------CCCCHHHHHHHH
Q 003918 694 KDVKAMCLKYAELEKSLGEIDRARGIYVFASQFAD------PRSDTEFWNRWH 740 (786)
Q Consensus 694 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~------p~~~~~~~~~~~ 740 (786)
.+.+|..+|.++...|++++|...|+++++. + |+ +...+..+.
T Consensus 206 --~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~p~-~~~~~~~l~ 254 (258)
T 3uq3_A 206 --FVRAYIRKATAQIAVKEYASALETLDAARTK-DAEVNNGSS-AREIDQLYY 254 (258)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHHHTTTT-HHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-ChhhcCCCc-hHHHHHHHH
Confidence 4678999999999999999999999999997 5 65 455555443
No 45
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.82 E-value=6.2e-19 Score=190.45 Aligned_cols=287 Identities=10% Similarity=0.059 Sum_probs=229.6
Q ss_pred cHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhc
Q 003918 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAA 501 (786)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 501 (786)
....+...|..+...|++++|+..|++++...|+++.....+|..++.++...|++++|+..|++++......
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------- 119 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM------- 119 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-------
Confidence 3456678889999999999999999999999999876666789999999999999999999999998762100
Q ss_pred cCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh------ccCCHHHHHHHHHHHHHccc-----------
Q 003918 502 DGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDL------RIATPQIIINYALLLEEHKY----------- 564 (786)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~~~~~~~~g~----------- 564 (786)
........++..++.++...|++++|...|+++++. .|....++..+|.++...|+
T Consensus 120 -------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~ 192 (411)
T 4a1s_A 120 -------NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFG 192 (411)
T ss_dssp -------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred -------cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhh
Confidence 000045678899999999999999999999999998 55566789999999999999
Q ss_pred ------HHHHHHHHHHHHhhcCC----CChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCc----HHHHHHH
Q 003918 565 ------FEDAFRVYERGVKIFKY----PHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAV----KPLYLQY 630 (786)
Q Consensus 565 ------~~~A~~~~~~al~~~~~----p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~~~~ 630 (786)
+++|+..+++++...+. |....++..++..+. ..|++++|...|+++++..|...+ ..++..+
T Consensus 193 ~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 269 (411)
T 4a1s_A 193 DDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYY---LLGDFQAAIEHHQERLRIAREFGDRAAERRANSNL 269 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---HcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 99999999999886311 222335555443333 358999999999999998765222 2378889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCch----hhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCCh----hHHHHHHH
Q 003918 631 AKLEEDYGLAKRAMKVYDQATKAVPNHEK----LGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDK----DVKAMCLK 702 (786)
Q Consensus 631 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~----~~~~~~~~ 702 (786)
|.++...|++++|...|+++++..|.... ...+..+...+...|++++|+.+|++++.. .+.. ....++..
T Consensus 270 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~ 348 (411)
T 4a1s_A 270 GNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI-AQELGDRIGEARACWS 348 (411)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHHTCHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHCCChHHHHHHHHH
Confidence 99999999999999999999988774311 344455555667889999999999999987 3321 13558888
Q ss_pred HHHHHHHcCChHHHHHHHHHHHcc
Q 003918 703 YAELEKSLGEIDRARGIYVFASQF 726 (786)
Q Consensus 703 ~~~~~~~~g~~~~A~~~~~~al~~ 726 (786)
++.++...|++++|..+|+++++.
T Consensus 349 la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 349 LGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHH
Confidence 999999999999999999999997
No 46
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.82 E-value=7.8e-16 Score=177.22 Aligned_cols=306 Identities=10% Similarity=0.030 Sum_probs=230.0
Q ss_pred CCCHHHHHHHHHhhc--CCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhh
Q 003918 382 PHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDH 459 (786)
Q Consensus 382 p~~~~~~~~~~~~~~--~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 459 (786)
.+.+.+|..+|..+. |++++|+..|.++ +++..|...|.++.+.|++++|++.|..+.+..++.
T Consensus 1102 vn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~--- 1167 (1630)
T 1xi4_A 1102 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--- 1167 (1630)
T ss_pred cCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc---
Confidence 466889988888885 8899999999874 357788999999999999999999999999877553
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHH
Q 003918 460 LASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYE 539 (786)
Q Consensus 460 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 539 (786)
.+-..++..+.+.+++++ .+.| +. .+ +..-|...|..+...|++++|...|.
T Consensus 1168 --~Idt~LafaYAKl~rlee-le~f---I~-~~---------------------n~ad~~~iGd~le~eg~YeeA~~~Y~ 1219 (1630)
T 1xi4_A 1168 --YVETELIFALAKTNRLAE-LEEF---IN-GP---------------------NNAHIQQVGDRCYDEKMYDAAKLLYN 1219 (1630)
T ss_pred --cccHHHHHHHHhhcCHHH-HHHH---Hh-CC---------------------CHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 222346666667788875 3333 22 22 23456678999999999999999999
Q ss_pred HHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCC
Q 003918 540 RILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAP 619 (786)
Q Consensus 540 ~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 619 (786)
++ ..|..++.++.+.|++++|++.++++.. ..+|......+. ..|++..|+.+... +..+|
T Consensus 1220 kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n-------~~aWkev~~acv---e~~Ef~LA~~cgl~-Iiv~~ 1280 (1630)
T 1xi4_A 1220 NV--------SNFGRLASTLVHLGEYQAAVDGARKANS-------TRTWKEVCFACV---DGKEFRLAQMCGLH-IVVHA 1280 (1630)
T ss_pred hh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCC-------HHHHHHHHHHHh---hhhHHHHHHHHHHh-hhcCH
Confidence 86 4799999999999999999999998833 468887654444 44789999988774 55555
Q ss_pred ccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCC---ChhH
Q 003918 620 ADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLP---DKDV 696 (786)
Q Consensus 620 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p---~~~~ 696 (786)
+ .+..++.+|...|.+++|+.+++.++...|.+..+.--.+.+..-.+-+++-++.++|...+.. .| .-..
T Consensus 1281 d-----eLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini-~k~~r~~e~ 1354 (1630)
T 1xi4_A 1281 D-----ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNI-PKVLRAAEQ 1354 (1630)
T ss_pred H-----HHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhccc-chHhHHHHH
Confidence 5 4558889999999999999999999999877544442233333223456777788888887765 33 0014
Q ss_pred HHHHHHHHHHHHHcCChHHHHHH-------------HHHHHccCCCCCCHHHHHHHHHHHHHcC---------------C
Q 003918 697 KAMCLKYAELEKSLGEIDRARGI-------------YVFASQFADPRSDTEFWNRWHEFEVNHG---------------N 748 (786)
Q Consensus 697 ~~~~~~~~~~~~~~g~~~~A~~~-------------~~~al~~~~p~~~~~~~~~~~~~~~~~G---------------~ 748 (786)
...|..+.-+|.+-|++++|... |...+. .+. +.+++...+.|+...+ +
T Consensus 1355 ~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~-n~elyykai~Fyl~~~P~~lndLl~~l~~rlD 1431 (1630)
T 1xi4_A 1355 AHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVA-NVELYYRAIQFYLEFKPLLLNDLLMVLSPRLD 1431 (1630)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--ccc-cHHHHHHHHHHHHhhChHHHHHHHHHhhhcCC
Confidence 67899999999999999999832 333333 234 5889999999999888 7
Q ss_pred HHHHHHHHH
Q 003918 749 EDTFREMLR 757 (786)
Q Consensus 749 ~~~a~~~~~ 757 (786)
.+++..+++
T Consensus 1432 ~~R~V~l~~ 1440 (1630)
T 1xi4_A 1432 HTRAVNYFS 1440 (1630)
T ss_pred hHHHHHHHH
Confidence 777777764
No 47
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.82 E-value=1.4e-18 Score=181.57 Aligned_cols=286 Identities=12% Similarity=0.054 Sum_probs=222.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhcc
Q 003918 423 HTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAAD 502 (786)
Q Consensus 423 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 502 (786)
...+...|..+...|++++|+..|++++...|+++.....++..++.++...|++++|+..+++++......
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-------- 76 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI-------- 76 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc--------
Confidence 456778899999999999999999999999999876666889999999999999999999999998653200
Q ss_pred CChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCC------HHHHHHHHHHHHHccc------------
Q 003918 503 GNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIAT------PQIIINYALLLEEHKY------------ 564 (786)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~g~------------ 564 (786)
........++..++.++...|++++|...|+++++..|.. ..++..+|.++...|+
T Consensus 77 ------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 150 (338)
T 3ro2_A 77 ------GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGE 150 (338)
T ss_dssp ------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----
T ss_pred ------cccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhh
Confidence 0000346788889999999999999999999999986644 3488899999999999
Q ss_pred --------HHHHHHHHHHHHhhcCC----CChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCc----HHHHH
Q 003918 565 --------FEDAFRVYERGVKIFKY----PHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAV----KPLYL 628 (786)
Q Consensus 565 --------~~~A~~~~~~al~~~~~----p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~~ 628 (786)
+++|+..+++++...+. |....++...+..+. ..|++++|...|+++++..|...+ ..++.
T Consensus 151 ~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 227 (338)
T 3ro2_A 151 FPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHY---LLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYS 227 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---HhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 99999999998876311 222334554443333 237899999999999987554211 33788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCch----hhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCCh----hHHHHH
Q 003918 629 QYAKLEEDYGLAKRAMKVYDQATKAVPNHEK----LGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDK----DVKAMC 700 (786)
Q Consensus 629 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~----~~~~~~ 700 (786)
.+|.++...|++++|...++++++..|.... ...+......+...|++++|+.++++++.. .|.. ....++
T Consensus 228 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~ 306 (338)
T 3ro2_A 228 NLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI-AQELKDRIGEGRAC 306 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHHTCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-HHhcCCcHHHHHHH
Confidence 8999999999999999999999987664322 233444445566789999999999999876 3321 125578
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHcc
Q 003918 701 LKYAELEKSLGEIDRARGIYVFASQF 726 (786)
Q Consensus 701 ~~~~~~~~~~g~~~~A~~~~~~al~~ 726 (786)
..++.++...|++++|..+|+++++.
T Consensus 307 ~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 307 WSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 88899999999999999999999986
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.81 E-value=1.2e-18 Score=173.01 Aligned_cols=209 Identities=13% Similarity=0.110 Sum_probs=156.0
Q ss_pred cHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhc
Q 003918 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAA 501 (786)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 501 (786)
.+..|..+|..+...|++++|+..|++++..+|.++ .++..++.++...|++++|+..|++++...|
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--------- 88 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDA----IPYINFANLLSSVNELERALAFYDKALELDS--------- 88 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---------
Confidence 456777888888888888888888888888888876 7888888888888888888888888888877
Q ss_pred cCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCC
Q 003918 502 DGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKY 581 (786)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~ 581 (786)
.+..++..++.++...|++++|+..|+++++..|.++.++..+|.++...|++++|+..+++++.. .
T Consensus 89 -----------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~ 155 (243)
T 2q7f_A 89 -----------SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--N 155 (243)
T ss_dssp -----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--C
T ss_pred -----------cchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--C
Confidence 677888888888888888888888888888888888888888888888888888888888888887 5
Q ss_pred CChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhh
Q 003918 582 PHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLG 661 (786)
Q Consensus 582 p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 661 (786)
|.+..+|..++..+.. .|++++|+..|+++++..|+ +..++..++.++...|++++|...|+++++..|+++...
T Consensus 156 ~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 230 (243)
T 2q7f_A 156 ENDTEARFQFGMCLAN---EGMLDEALSQFAAVTEQDPG--HADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLAL 230 (243)
T ss_dssp TTCHHHHHHHHHHHHH---HTCCHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred CccHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHH
Confidence 7777777776654443 37788888888888888887 677888888888888888888888888888888765444
No 49
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.80 E-value=2.9e-18 Score=173.86 Aligned_cols=252 Identities=13% Similarity=0.053 Sum_probs=202.1
Q ss_pred HhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHH
Q 003918 472 LRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQI 551 (786)
Q Consensus 472 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 551 (786)
...|++++|+..|++++...+.. ....+.+|..++.++...|++++|+..|+++++.+|+++.+
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 79 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALT----------------DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEV 79 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCC----------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHH
T ss_pred CccchHHHHHHHHHHHHhccccc----------------CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHH
Confidence 45688999999999999863200 00567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHH
Q 003918 552 IINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYA 631 (786)
Q Consensus 552 ~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a 631 (786)
|..+|.++...|++++|+..|++++.. +|.+..+|..++..+. ..|++++|+..|+++++..|+ +.......+
T Consensus 80 ~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~a~~~~~~--~~~~~~~~~ 152 (275)
T 1xnf_A 80 FNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALY---YGGRDKLAQDDLLAFYQDDPN--DPFRSLWLY 152 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCTT--CHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhc--CccccHHHHHHHHHHH---HhccHHHHHHHHHHHHHhCCC--ChHHHHHHH
Confidence 999999999999999999999999998 6888888988765554 358999999999999999998 443333333
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCCh--hHHHHHHHHHHHHHH
Q 003918 632 KLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDK--DVKAMCLKYAELEKS 709 (786)
Q Consensus 632 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~--~~~~~~~~~~~~~~~ 709 (786)
+....|++++|...+++++...|++..... .+......++.++|...+++++.. .|.. ....++..+|.++..
T Consensus 153 -~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~la~~~~~ 227 (275)
T 1xnf_A 153 -LAEQKLDEKQAKEVLKQHFEKSDKEQWGWN---IVEFYLGNISEQTLMERLKADATD-NTSLAEHLSETNFYLGKYYLS 227 (275)
T ss_dssp -HHHHHHCHHHHHHHHHHHHHHSCCCSTHHH---HHHHHTTSSCHHHHHHHHHHHCCS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHhcCHHHHHHHHHHHHhcCCcchHHHH---HHHHHHHhcCHHHHHHHHHHHhcc-cccccccccHHHHHHHHHHHH
Confidence 446679999999999999999987643322 333345678889999999999877 4432 125789999999999
Q ss_pred cCChHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003918 710 LGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREML 756 (786)
Q Consensus 710 ~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~G~~~~a~~~~ 756 (786)
.|++++|...|++++.. +|+. |..++..+...|+.++|.+.+
T Consensus 228 ~g~~~~A~~~~~~al~~-~p~~----~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 228 LGDLDSATALFKLAVAN-NVHN----FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TTCHHHHHHHHHHHHTT-CCTT----CHHHHHHHHHHHHHHHC----
T ss_pred cCCHHHHHHHHHHHHhC-Cchh----HHHHHHHHHHHHHHHhhHHHH
Confidence 99999999999999997 6762 344466677778888887664
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.80 E-value=8.4e-18 Score=168.07 Aligned_cols=205 Identities=14% Similarity=0.093 Sum_probs=144.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhcc
Q 003918 423 HTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAAD 502 (786)
Q Consensus 423 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 502 (786)
+.+|..+|..+...|++++|+..|++++..+|.+. .+|..++.++...|++++|+..|++++...|
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~---------- 102 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSA----DAHAALAVVFQTEMEPKLADEEYRKALASDS---------- 102 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc----------
Confidence 56677777777777777777777777777777665 6677777777777777777777777776666
Q ss_pred CChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcC
Q 003918 503 GNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILD--LRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFK 580 (786)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~ 580 (786)
.+..+|..++.++...|++++|+..|++++. ..|.++.++..+|.++...|++++|+..+++++..
T Consensus 103 ----------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-- 170 (252)
T 2ho1_A 103 ----------RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL-- 170 (252)
T ss_dssp ----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred ----------CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Confidence 5566677777777777777777777777777 66666677777777777777777777777777775
Q ss_pred CCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 003918 581 YPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHE 658 (786)
Q Consensus 581 ~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~ 658 (786)
.|.+..+|..++..+. ..|++++|...|+++++..|. +...+..++.++...|++++|..+++++++..|+++
T Consensus 171 ~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 243 (252)
T 2ho1_A 171 NRNQPSVALEMADLLY---KEREYVPARQYYDLFAQGGGQ--NARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSL 243 (252)
T ss_dssp CSCCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSH
T ss_pred CcccHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCcC--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCH
Confidence 4666666665544333 236677777777777777776 556667777777777777777777777777777654
No 51
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.80 E-value=3.9e-18 Score=161.43 Aligned_cols=171 Identities=13% Similarity=0.183 Sum_probs=136.9
Q ss_pred CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhh
Q 003918 421 KPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVA 500 (786)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 500 (786)
+++.+|..+|..+...|++++|+..|+++++.+|+++ .+|..++.++.+.|++++|+..+.+++...|
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-------- 70 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNV----ETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-------- 70 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--------
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc--------
Confidence 4677888888888888888888888888888888887 7888888888888888888888888887777
Q ss_pred ccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcC
Q 003918 501 ADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFK 580 (786)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~ 580 (786)
.....+..++.++...++++.|...+.+++...|.++.++..+|.++...|++++|++.|+++++.
T Consensus 71 ------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~-- 136 (184)
T 3vtx_A 71 ------------TSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI-- 136 (184)
T ss_dssp ------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred ------------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh--
Confidence 667777778888888888888888888888888888888888888888888888888888888886
Q ss_pred CCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCc
Q 003918 581 YPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPA 620 (786)
Q Consensus 581 ~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 620 (786)
+|.++.+|..++..+. ..|++++|+..|+++++.+|+
T Consensus 137 ~p~~~~~~~~lg~~~~---~~g~~~~A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 137 KPGFIRAYQSIGLAYE---GKGLRDEAVKYFKKALEKEEK 173 (184)
T ss_dssp CTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHTTHH
T ss_pred cchhhhHHHHHHHHHH---HCCCHHHHHHHHHHHHhCCcc
Confidence 6777777777554443 347788888888888888776
No 52
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.80 E-value=2.7e-18 Score=174.07 Aligned_cols=228 Identities=11% Similarity=-0.002 Sum_probs=137.5
Q ss_pred CCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccC
Q 003918 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKN 476 (786)
Q Consensus 397 ~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~ 476 (786)
+++++|+..|+++++. .+. ..+..+.+|..+|..+...|++++|+..|++++..+|+++ .+|..++.++...|+
T Consensus 19 ~~~~~A~~~~~~~~~~-~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~~~ 92 (275)
T 1xnf_A 19 LQQEVILARMEQILAS-RAL-TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMP----EVFNYLGIYLTQAGN 92 (275)
T ss_dssp HHHHHHHHHHHHHHTS-SCC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHhc-ccc-cCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHccC
Confidence 5566677777776642 221 1123456666666666667777777777777776666665 666666666666677
Q ss_pred HHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHH
Q 003918 477 FKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYA 556 (786)
Q Consensus 477 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 556 (786)
+++|+..|++++...| .+..+|..++.++...|++++|+..|+++++..|+++......+
T Consensus 93 ~~~A~~~~~~al~~~~--------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 152 (275)
T 1xnf_A 93 FDAAYEAFDSVLELDP--------------------TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY 152 (275)
T ss_dssp HHHHHHHHHHHHHHCT--------------------TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCc--------------------cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 7777777776666666 45566666666666666777777777777666666664444333
Q ss_pred HHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCcc--CcHHHHHHHHHHH
Q 003918 557 LLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPAD--AVKPLYLQYAKLE 634 (786)
Q Consensus 557 ~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~~a~~~ 634 (786)
+....|++++|+..+++++.. .|.+...|.. +..+ ++.++.++|...+++++...|.. .+..++..+|.++
T Consensus 153 -~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~-~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 225 (275)
T 1xnf_A 153 -LAEQKLDEKQAKEVLKQHFEK--SDKEQWGWNI-VEFY---LGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYY 225 (275)
T ss_dssp -HHHHHHCHHHHHHHHHHHHHH--SCCCSTHHHH-HHHH---TTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHhcCHHHHHHHHHHHHhc--CCcchHHHHH-HHHH---HHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHH
Confidence 224456666666666666665 3444333332 2222 24455666666666666655431 0145666666666
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCC
Q 003918 635 EDYGLAKRAMKVYDQATKAVPNH 657 (786)
Q Consensus 635 ~~~g~~~~A~~~~~~~l~~~p~~ 657 (786)
...|++++|...|+++++..|.+
T Consensus 226 ~~~g~~~~A~~~~~~al~~~p~~ 248 (275)
T 1xnf_A 226 LSLGDLDSATALFKLAVANNVHN 248 (275)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCTT
T ss_pred HHcCCHHHHHHHHHHHHhCCchh
Confidence 66666666666666666666643
No 53
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.80 E-value=1.7e-17 Score=162.32 Aligned_cols=208 Identities=16% Similarity=0.086 Sum_probs=135.5
Q ss_pred CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhh
Q 003918 421 KPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVA 500 (786)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 500 (786)
..+.+|..+|..+...|++++|+..|++++..+|+++ .+|..++.++...|++++|+.+|++++...|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-------- 73 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNE----LAWLVRAEIYQYLKVNDKAQESFRQALSIKP-------- 73 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccch----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--------
Confidence 4566666777777777777777777777777666665 6666666666667777777777777766666
Q ss_pred ccCChhHHHHhhhcHHHHHHHHHHHHHc-CChHHHHHHHHHHHh--hccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 003918 501 ADGNEPVQMKLHKSLRLWTFYVDLEESL-GNLESTRAVYERILD--LRIATPQIIINYALLLEEHKYFEDAFRVYERGVK 577 (786)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 577 (786)
.+...+..++.++... |++++|+..|+++++ ..|.++.++..+|.++...|++++|+..++++++
T Consensus 74 ------------~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 141 (225)
T 2vq2_A 74 ------------DSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA 141 (225)
T ss_dssp ------------TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------CChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4556666666666666 677777777777766 4455556666666666666777777777776666
Q ss_pred hcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCC-ccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 003918 578 IFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAP-ADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPN 656 (786)
Q Consensus 578 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~ 656 (786)
. .|.+..+|..++..+.. .|++++|...|+++++..| . +...+...+.++...|+.+.|..+++.+++..|+
T Consensus 142 ~--~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 214 (225)
T 2vq2_A 142 A--QPQFPPAFKELARTKML---AGQLGDADYYFKKYQSRVEVL--QADDLLLGWKIAKALGNAQAAYEYEAQLQANFPY 214 (225)
T ss_dssp H--STTCHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred h--CCCCchHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC
Confidence 5 46666666654443332 2566667777776666666 5 4555566666666666666666666666666665
Q ss_pred Cch
Q 003918 657 HEK 659 (786)
Q Consensus 657 ~~~ 659 (786)
++.
T Consensus 215 ~~~ 217 (225)
T 2vq2_A 215 SEE 217 (225)
T ss_dssp CHH
T ss_pred CHH
Confidence 543
No 54
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.79 E-value=4.3e-18 Score=183.23 Aligned_cols=312 Identities=13% Similarity=0.023 Sum_probs=235.2
Q ss_pred CHHHHHHHHHhh--cCCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccC--CChhh
Q 003918 384 NVEQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNY--KTVDH 459 (786)
Q Consensus 384 ~~~~~~~~~~~~--~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~~~~~ 459 (786)
....|...|..+ .|++++|+..|++++. ..|.. ......+|..+|..+...|++++|+..|++++...+ .+...
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~-~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQ-VGTED-LKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCCSC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHh-cCccc-HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 344555566655 3999999999999995 45510 001146889999999999999999999999987632 22233
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCC---------
Q 003918 460 LASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGN--------- 530 (786)
Q Consensus 460 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--------- 530 (786)
...++..++.++...|++++|+..+++++...+... .......++..++.++...|+
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------------~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~ 151 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN--------------DKVGEARALYNLGNVYHAKGKSFGCPGPQD 151 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--------------CHHHHHHHHHHHHHHHHHHHHTCC------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc--------------cccchHHHHHHHHHHHHHcCCcccccccch
Confidence 457889999999999999999999999997765100 000235688888999999999
Q ss_pred -----------hHHHHHHHHHHHhh------ccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCC-CChH---HHHH
Q 003918 531 -----------LESTRAVYERILDL------RIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKY-PHVK---DIWV 589 (786)
Q Consensus 531 -----------~~~A~~~~~~al~~------~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~-p~~~---~~~~ 589 (786)
+++|...|++++.. .|....++..+|.++...|++++|+..+++++...+. +... .++.
T Consensus 152 ~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 231 (406)
T 3sf4_A 152 VGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYS 231 (406)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 99999999999987 3334568999999999999999999999999987422 2211 2455
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch----hh
Q 003918 590 TYLSKFVKRYGKTKLERARELFENAVETAPADAV----KPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEK----LG 661 (786)
Q Consensus 590 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~~ 661 (786)
.++..+. ..|++++|...|+++++..|...+ ..++..+|.++...|++++|...|+++++..+.... ..
T Consensus 232 ~la~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 308 (406)
T 3sf4_A 232 NLGNAYI---FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGR 308 (406)
T ss_dssp HHHHHHH---HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHH---HcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 4443332 458999999999999998665211 568889999999999999999999999987664322 33
Q ss_pred HHHHHHHHHHHhcChhHHHHHHHHHHHhcCCC----hhHHHHHHHHHHHHHHcCChHH
Q 003918 662 MYEIYIARAAEIFGVPKTREIYEQAIESGLPD----KDVKAMCLKYAELEKSLGEIDR 715 (786)
Q Consensus 662 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~----~~~~~~~~~~~~~~~~~g~~~~ 715 (786)
.+..+...+...|++++|+.+|+++++. .+. .....++..++.++...|+...
T Consensus 309 ~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 309 ACWSLGNAYTALGNHDQAMHFAEKHLEI-SREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 4455555667889999999999999986 221 2235678888999888887743
No 55
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.79 E-value=7.4e-18 Score=167.29 Aligned_cols=221 Identities=13% Similarity=0.098 Sum_probs=173.0
Q ss_pred hcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHH
Q 003918 513 KSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYL 592 (786)
Q Consensus 513 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~ 592 (786)
..+..|...+..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++.. +|.+..+|..++
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL--DSSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCcchHHHHHHH
Confidence 355778888999999999999999999999999999999999999999999999999999999998 688888888766
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHH
Q 003918 593 SKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAE 672 (786)
Q Consensus 593 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~ 672 (786)
..+. ..|++++|...|+++++..|. +..++..+|.++...|++++|...++++++..|.++... ..++..+..
T Consensus 99 ~~~~---~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~l~~~~~~ 171 (243)
T 2q7f_A 99 NVYV---VKEMYKEAKDMFEKALRAGME--NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEAR--FQFGMCLAN 171 (243)
T ss_dssp HHHH---HTTCHHHHHHHHHHHHHHTCC--SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHH--HHHHHHHHH
T ss_pred HHHH---HhccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHH--HHHHHHHHH
Confidence 5544 348999999999999999998 678999999999999999999999999999999865544 444445568
Q ss_pred hcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHcC
Q 003918 673 IFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHG 747 (786)
Q Consensus 673 ~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~G 747 (786)
.|++++|+..|++++.. .|. .+.++..++.++...|++++|..+|+++++. +|+ +...|..+..+....|
T Consensus 172 ~~~~~~A~~~~~~~~~~-~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~p~-~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 172 EGMLDEALSQFAAVTEQ-DPG--HADAFYNAGVTYAYKENREKALEMLDKAIDI-QPD-HMLALHAKKLLGHHHH 241 (243)
T ss_dssp HTCCHHHHHHHHHHHHH-CTT--CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH-CTT-CHHHHHHHTC------
T ss_pred cCCHHHHHHHHHHHHHh-Ccc--cHHHHHHHHHHHHHccCHHHHHHHHHHHHcc-Ccc-hHHHHHHHHHHHhhcc
Confidence 89999999999999999 887 4668999999999999999999999999997 788 5777777766655444
No 56
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.78 E-value=1.1e-17 Score=158.44 Aligned_cols=168 Identities=12% Similarity=0.146 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003918 462 SIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERI 541 (786)
Q Consensus 462 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 541 (786)
.+|..+|.++...|++++|+..|+++++..| +++.+|..++.++...|++++|+..+.++
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p--------------------~~~~~~~~la~~~~~~~~~~~a~~~~~~~ 65 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKADP--------------------NNVETLLKLGKTYMDIGLPNDAIESLKKF 65 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4555555555555555555555555555555 44555555555555555555555555555
Q ss_pred HhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCcc
Q 003918 542 LDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPAD 621 (786)
Q Consensus 542 l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 621 (786)
+...|+++.++..+|.++...++++.|...+.+++.. +|.+..+|..++..+. ..|++++|+..|+++++.+|.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~---~~g~~~~A~~~~~~~l~~~p~- 139 (184)
T 3vtx_A 66 VVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYD---SMGEHDKAIEAYEKTISIKPG- 139 (184)
T ss_dssp HHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCTT-
T ss_pred HhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHH---HhCCchhHHHHHHHHHHhcch-
Confidence 5555555555555555555555555555555555554 3555555554333222 224555555555555555555
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 003918 622 AVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPN 656 (786)
Q Consensus 622 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~ 656 (786)
+..+|..+|.++...|++++|+..|+++++.+|+
T Consensus 140 -~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 140 -FIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEK 173 (184)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHH
T ss_pred -hhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCcc
Confidence 4455555555555555555555555555555553
No 57
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.78 E-value=5.4e-17 Score=162.12 Aligned_cols=212 Identities=12% Similarity=0.110 Sum_probs=188.0
Q ss_pred hcCCCC-HHHHHHHHHhhc--CCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCC
Q 003918 379 RQNPHN-VEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYK 455 (786)
Q Consensus 379 ~~~p~~-~~~~~~~~~~~~--~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 455 (786)
..+|.+ +..|..++..+. |++++|+..|++++. .+| ..+.+|..+|.++...|++++|+..|++++..+|.
T Consensus 30 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-~~~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 103 (252)
T 2ho1_A 30 DKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALE-IDP-----SSADAHAALAVVFQTEMEPKLADEEYRKALASDSR 103 (252)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHH-HCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHh-cCC-----ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 456665 778888887774 999999999999995 555 57899999999999999999999999999999998
Q ss_pred ChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhc--CCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHH
Q 003918 456 TVDHLASIWCEWAEMELRHKNFKGALELMRRATA--EPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLES 533 (786)
Q Consensus 456 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 533 (786)
+. .+|..++.++...|++++|+.+|++++. ..| ....++..++.++...|++++
T Consensus 104 ~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--------------------~~~~~~~~la~~~~~~g~~~~ 159 (252)
T 2ho1_A 104 NA----RVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYP--------------------ERSRVFENLGLVSLQMKKPAQ 159 (252)
T ss_dssp CH----HHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCT--------------------THHHHHHHHHHHHHHTTCHHH
T ss_pred cH----HHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCc--------------------ccHHHHHHHHHHHHHcCCHHH
Confidence 87 8999999999999999999999999999 667 677889999999999999999
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 003918 534 TRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFEN 613 (786)
Q Consensus 534 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 613 (786)
|...|+++++..|.++.++..++.++...|++++|+..+++++.. .|.+...+...+..+. ..|++++|...+++
T Consensus 160 A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~g~~~~A~~~~~~ 234 (252)
T 2ho1_A 160 AKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQG--GGQNARSLLLGIRLAK---VFEDRDTAASYGLQ 234 (252)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SCCCHHHHHHHHHHHH---HTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHH---HccCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999997 6888888876554443 34899999999999
Q ss_pred HHhhCCccCcHHHH
Q 003918 614 AVETAPADAVKPLY 627 (786)
Q Consensus 614 al~~~p~~~~~~~~ 627 (786)
+++..|+ +...+
T Consensus 235 ~~~~~p~--~~~~~ 246 (252)
T 2ho1_A 235 LKRLYPG--SLEYQ 246 (252)
T ss_dssp HHHHCTT--SHHHH
T ss_pred HHHHCCC--CHHHH
Confidence 9999998 44443
No 58
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.77 E-value=3.1e-16 Score=153.25 Aligned_cols=211 Identities=13% Similarity=0.036 Sum_probs=180.7
Q ss_pred hcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHH
Q 003918 513 KSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYL 592 (786)
Q Consensus 513 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~ 592 (786)
.++.+|..++.++...|++++|+..|+++++..|+++.++..+|.++...|++++|+..+++++.. +|.+..+|..++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~ 83 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI--KPDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCChHHHHHHH
Confidence 567889999999999999999999999999999999999999999999999999999999999997 688888888766
Q ss_pred HHHHHHhCC-CChHHHHHHHHHHHh--hCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHH
Q 003918 593 SKFVKRYGK-TKLERARELFENAVE--TAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIAR 669 (786)
Q Consensus 593 ~~~~~~~~~-~~~~~A~~~~~~al~--~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~ 669 (786)
..+. .. |++++|...|+++++ ..|. +..++..+|.++...|++++|+..++++++..|.++.. +..++..
T Consensus 84 ~~~~---~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~la~~ 156 (225)
T 2vq2_A 84 WFLC---GRLNRPAESMAYFDKALADPTYPT--PYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPA--FKELART 156 (225)
T ss_dssp HHHH---TTTCCHHHHHHHHHHHHTSTTCSC--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH--HHHHHHH
T ss_pred HHHH---HhcCcHHHHHHHHHHHHcCcCCcc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchH--HHHHHHH
Confidence 5443 67 899999999999999 5555 57889999999999999999999999999999986444 4444445
Q ss_pred HHHhcChhHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCCCHHHHH
Q 003918 670 AAEIFGVPKTREIYEQAIESGLP-DKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWN 737 (786)
Q Consensus 670 ~~~~~~~~~A~~~~~~al~~~~p-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~ 737 (786)
+...|++++|..+|++++.. .| . ....+...+.++...|+.+.|..+++.+++. .|+ +...+.
T Consensus 157 ~~~~~~~~~A~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~p~-~~~~~~ 220 (225)
T 2vq2_A 157 KMLAGQLGDADYYFKKYQSR-VEVL--QADDLLLGWKIAKALGNAQAAYEYEAQLQAN-FPY-SEELQT 220 (225)
T ss_dssp HHHHTCHHHHHHHHHHHHHH-HCSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTT-CHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh-CCCC--CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCC-CHHHHH
Confidence 56889999999999999998 77 6 3557777888899999999999999999876 677 455443
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.77 E-value=1.3e-17 Score=180.00 Aligned_cols=285 Identities=10% Similarity=-0.020 Sum_probs=219.2
Q ss_pred HHHHHHHHHhh--cCCchhHHHHHHHHHhccCCCccCCCcH----HHHHHHHHHHHHcCChhHHHHHHHHHHhcc--CCC
Q 003918 385 VEQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPH----TLWVAFAKLYETYKDIANARVIFDKAVQVN--YKT 456 (786)
Q Consensus 385 ~~~~~~~~~~~--~~~~~~a~~~~~~al~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~ 456 (786)
...+...+..+ .|++++|+..|++++. ..| .++ .+|..+|.++...|++++|+..|++++... ..+
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~-~~~-----~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 121 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQ-AGT-----EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND 121 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCC-----SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHH-hcc-----cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccC
Confidence 34444555554 3999999999999995 455 333 588999999999999999999999999862 112
Q ss_pred hhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCC------
Q 003918 457 VDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGN------ 530 (786)
Q Consensus 457 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~------ 530 (786)
......++..++.++...|++++|...|++++...+.. ........++..++.++...|+
T Consensus 122 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------------~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 187 (411)
T 4a1s_A 122 RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL--------------GDRLSEGRALYNLGNVYHAKGKHLGQRN 187 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--------------TCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh--------------hchHHHHHHHHHHHHHHHHcCccccccc
Confidence 22334889999999999999999999999999763300 0001456788889999999999
Q ss_pred -----------hHHHHHHHHHHHhhc------cCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCCh----HHHHH
Q 003918 531 -----------LESTRAVYERILDLR------IATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHV----KDIWV 589 (786)
Q Consensus 531 -----------~~~A~~~~~~al~~~------p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~----~~~~~ 589 (786)
+++|+..|+++++.. +....++..+|.++...|++++|+..++++++..+...+ ..++.
T Consensus 188 ~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 267 (411)
T 4a1s_A 188 PGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANS 267 (411)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 999999999998863 233458899999999999999999999999997421111 11444
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHhhCCccC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch----hh
Q 003918 590 TYLSKFVKRYGKTKLERARELFENAVETAPADA----VKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEK----LG 661 (786)
Q Consensus 590 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~~ 661 (786)
.++..+. ..|++++|+..|+++++..|... ...++..+|.++...|++++|...+++++...+.... ..
T Consensus 268 ~la~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 344 (411)
T 4a1s_A 268 NLGNSHI---FLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEAR 344 (411)
T ss_dssp HHHHHHH---TTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHH---HCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHH
Confidence 4443332 56899999999999999876421 2568889999999999999999999999987664321 23
Q ss_pred HHHHHHHHHHHhcChhHHHHHHHHHHHhcCCC
Q 003918 662 MYEIYIARAAEIFGVPKTREIYEQAIESGLPD 693 (786)
Q Consensus 662 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~ 693 (786)
.+..+...+...|++++|+.+|++++.. .+.
T Consensus 345 ~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~ 375 (411)
T 4a1s_A 345 ACWSLGNAHSAIGGHERALKYAEQHLQL-AXX 375 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH-Hhh
Confidence 4445555667899999999999999998 654
No 60
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.76 E-value=1.8e-17 Score=181.65 Aligned_cols=213 Identities=13% Similarity=0.071 Sum_probs=192.4
Q ss_pred chhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCCh-hHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCH
Q 003918 399 PTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDI-ANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNF 477 (786)
Q Consensus 399 ~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~ 477 (786)
.++++..++... ..+| ....+|..+|..+...|++ ++|+..|+++++.+|++. .+|..++.++...|++
T Consensus 84 ~~~al~~l~~~~-~~~~-----~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~----~a~~~lg~~~~~~g~~ 153 (474)
T 4abn_A 84 MEKTLQQMEEVL-GSAQ-----VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELV----EAWNQLGEVYWKKGDV 153 (474)
T ss_dssp HHHHHHHHHHHH-TTCC-----CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHh-ccCc-----hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCH
Confidence 456777787766 3444 6789999999999999999 999999999999999997 9999999999999999
Q ss_pred HHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHc---------CChHHHHHHHHHHHhhccCC
Q 003918 478 KGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESL---------GNLESTRAVYERILDLRIAT 548 (786)
Q Consensus 478 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------g~~~~A~~~~~~al~~~p~~ 548 (786)
++|+..|++++...| + ..++..++.++... |++++|+..|+++++.+|++
T Consensus 154 ~~A~~~~~~al~~~p--------------------~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 212 (474)
T 4abn_A 154 TSAHTCFSGALTHCK--------------------N-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD 212 (474)
T ss_dssp HHHHHHHHHHHTTCC--------------------C-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHhhCC--------------------C-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC
Confidence 999999999999999 5 68899999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHHc--------ccHHHHHHHHHHHHhhcCCC---ChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhh
Q 003918 549 PQIIINYALLLEEH--------KYFEDAFRVYERGVKIFKYP---HVKDIWVTYLSKFVKRYGKTKLERARELFENAVET 617 (786)
Q Consensus 549 ~~~~~~~~~~~~~~--------g~~~~A~~~~~~al~~~~~p---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 617 (786)
+.+|..+|.++... |++++|+..|+++++. +| .++.+|..++..+. ..|++++|...|+++++.
T Consensus 213 ~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~---~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 213 GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--DRKASSNPDLHLNRATLHK---YEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHh
Confidence 99999999999999 9999999999999998 68 89999998765544 348899999999999999
Q ss_pred CCccCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003918 618 APADAVKPLYLQYAKLEEDYGLAKRAMKVYDQ 649 (786)
Q Consensus 618 ~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 649 (786)
.|+ +...+..++.++...|++++|+..+.+
T Consensus 288 ~p~--~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 288 DPA--WPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp CTT--CHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCC--CHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999 678999999999999999998876644
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.75 E-value=3.3e-17 Score=170.96 Aligned_cols=286 Identities=13% Similarity=0.015 Sum_probs=213.8
Q ss_pred HHHHHHhh--cCCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccC--CChhhHHHH
Q 003918 388 WHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNY--KTVDHLASI 463 (786)
Q Consensus 388 ~~~~~~~~--~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~ 463 (786)
+...+..+ .|++++|+..|++++. .+|.. ......++..+|..+...|++++|+..|++++...+ .+......+
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~-~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQ-VGTED-LKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH-HCCSC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHh-hCccc-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 33444444 4999999999999995 45510 001147888999999999999999999999987632 122233478
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCC-------------
Q 003918 464 WCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGN------------- 530 (786)
Q Consensus 464 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~------------- 530 (786)
+..++.++...|++++|...+++++...+... .......++..++.++...|+
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 151 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELN--------------DKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEF 151 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--------------CHHHHHHHHHHHHHHHHHHHHTSSSSSCC----C
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc--------------CchHHHHHHHHHHHHHHHcCcccccchhhhhhhh
Confidence 89999999999999999999999987654100 000234578888999999999
Q ss_pred -------hHHHHHHHHHHHhh------ccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCCh----HHHHHHHHH
Q 003918 531 -------LESTRAVYERILDL------RIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHV----KDIWVTYLS 593 (786)
Q Consensus 531 -------~~~A~~~~~~al~~------~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~----~~~~~~~~~ 593 (786)
+++|...|++++.. .+....++..+|.++...|++++|+..+++++...+...+ ..++..++.
T Consensus 152 ~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 231 (338)
T 3ro2_A 152 PEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGN 231 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 99999999999876 2333568899999999999999999999999987321111 225555443
Q ss_pred HHHHHhCCCChHHHHHHHHHHHhhCCccCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch----hhHHHH
Q 003918 594 KFVKRYGKTKLERARELFENAVETAPADAV----KPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEK----LGMYEI 665 (786)
Q Consensus 594 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~~~~~~ 665 (786)
.+. ..|++++|...|+++++..|...+ ..++..+|.++...|++++|...++++++..|.... ...+..
T Consensus 232 ~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 308 (338)
T 3ro2_A 232 AYI---FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWS 308 (338)
T ss_dssp HHH---HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHH---HcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 333 238899999999999998665211 567888999999999999999999999987664322 234455
Q ss_pred HHHHHHHhcChhHHHHHHHHHHHhcCCC
Q 003918 666 YIARAAEIFGVPKTREIYEQAIESGLPD 693 (786)
Q Consensus 666 ~~~~~~~~~~~~~A~~~~~~al~~~~p~ 693 (786)
+...+...|++++|..+|++++.. .+.
T Consensus 309 la~~~~~~g~~~~A~~~~~~a~~~-~~~ 335 (338)
T 3ro2_A 309 LGNAYTALGNHDQAMHFAEKHLEI-SRE 335 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred HHHHHHHcCChHHHHHHHHHHHHH-HHh
Confidence 556667899999999999999988 543
No 62
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.75 E-value=1.7e-15 Score=153.29 Aligned_cols=230 Identities=15% Similarity=0.084 Sum_probs=168.7
Q ss_pred CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHh----ccCHHHHHHHHHHHhcCCchHHh
Q 003918 421 KPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELR----HKNFKGALELMRRATAEPSVEVR 496 (786)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~~~~~~ 496 (786)
.++.++..+|..+...|++++|+..|+++++ |+++ ..+..++.++.. .+++++|+..|++++....
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~----~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---- 73 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKEN----SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY---- 73 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCH----HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC----
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCH----HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCC----
Confidence 4677888888888888888888888888887 5555 777888888888 8888888888888876543
Q ss_pred hhhhccCChhHHHHhhhcHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHH----cccHHHH
Q 003918 497 RRVAADGNEPVQMKLHKSLRLWTFYVDLEES----LGNLESTRAVYERILDLRIATPQIIINYALLLEE----HKYFEDA 568 (786)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~g~~~~A 568 (786)
+..+..++.++.. .+++++|+..|+++++. +++.++..+|.++.. .|++++|
T Consensus 74 ------------------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A 133 (273)
T 1ouv_A 74 ------------------SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKA 133 (273)
T ss_dssp ------------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred ------------------HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHH
Confidence 4677778888888 88888888888888876 578888888888888 8888888
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHH----cCCHHHH
Q 003918 569 FRVYERGVKIFKYPHVKDIWVTYLSKFVKRY-GKTKLERARELFENAVETAPADAVKPLYLQYAKLEED----YGLAKRA 643 (786)
Q Consensus 569 ~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~----~g~~~~A 643 (786)
+..|+++++. . +..++..++..+.... ..+++++|+..|+++++..+ ...+..++.++.. .|++++|
T Consensus 134 ~~~~~~a~~~--~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~----~~a~~~lg~~~~~g~~~~~~~~~A 205 (273)
T 1ouv_A 134 VEYFTKACDL--N--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKD----SPGCFNAGNMYHHGEGATKNFKEA 205 (273)
T ss_dssp HHHHHHHHHT--T--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHTCSSCCCHHHH
T ss_pred HHHHHHHHhc--C--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC----HHHHHHHHHHHHcCCCCCccHHHH
Confidence 8888888885 2 3455655443333100 14678888888888887743 4677788888888 7888888
Q ss_pred HHHHHHHHhcCCCCchhhHHHHHHHHHHH----hcChhHHHHHHHHHHHhcCCC
Q 003918 644 MKVYDQATKAVPNHEKLGMYEIYIARAAE----IFGVPKTREIYEQAIESGLPD 693 (786)
Q Consensus 644 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~~p~ 693 (786)
+..|+++++..| +...... ...+.. .+++++|+..|+++++. .|.
T Consensus 206 ~~~~~~a~~~~~--~~a~~~l--~~~~~~g~~~~~~~~~A~~~~~~a~~~-~~~ 254 (273)
T 1ouv_A 206 LARYSKACELEN--GGGCFNL--GAMQYNGEGVTRNEKQAIENFKKGCKL-GAK 254 (273)
T ss_dssp HHHHHHHHHTTC--HHHHHHH--HHHHHTTSSSSCCSTTHHHHHHHHHHH-TCH
T ss_pred HHHHHHHHhCCC--HHHHHHH--HHHHHcCCCcccCHHHHHHHHHHHHHc-CCH
Confidence 888888887654 2222222 233345 67778888888888877 554
No 63
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.75 E-value=1.9e-16 Score=172.30 Aligned_cols=319 Identities=13% Similarity=0.018 Sum_probs=232.3
Q ss_pred CHHHHHHHHHh-hc-C-----CchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhH---HHHHHHHHHhcc
Q 003918 384 NVEQWHRRVKI-FE-G-----NPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIAN---ARVIFDKAVQVN 453 (786)
Q Consensus 384 ~~~~~~~~~~~-~~-~-----~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~---A~~~~~~al~~~ 453 (786)
++.++..++.+ +. + ++++|+..|++++.. .++.++..+|.+|...+..+. +...+.++...
T Consensus 68 ~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~--------g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~- 138 (452)
T 3e4b_A 68 SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFAN--------GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA- 138 (452)
T ss_dssp ---CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT--------TCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC-
Confidence 55667777773 33 2 568999999999963 234488899999987765544 44455554432
Q ss_pred CCChhhHHHHHHHHHHHHHhcc----CHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcC
Q 003918 454 YKTVDHLASIWCEWAEMELRHK----NFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLG 529 (786)
Q Consensus 454 p~~~~~~~~~~~~~a~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 529 (786)
.++ ..+..++.++...+ ..+.+..+++.+....| ..+..++.++...|
T Consensus 139 -g~~----~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~-----------------------~a~~~Lg~~~~~~g 190 (452)
T 3e4b_A 139 -GYP----EAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTD-----------------------ICYVELATVYQKKQ 190 (452)
T ss_dssp -TCT----THHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCT-----------------------THHHHHHHHHHHTT
T ss_pred -CCH----HHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCH-----------------------HHHHHHHHHHHHcC
Confidence 333 67788888888877 45666666777766666 47888899999999
Q ss_pred ---ChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHc----ccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCC
Q 003918 530 ---NLESTRAVYERILDLRIATPQIIINYALLLEEH----KYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKT 602 (786)
Q Consensus 530 ---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~----g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~ 602 (786)
++++|+..|+++.+..|.....++.+|.+|... +++++|+..|+++. |.++.++..++..++...+.+
T Consensus 191 ~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-----~g~~~a~~~Lg~~~~~~~~~~ 265 (452)
T 3e4b_A 191 QPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-----PGYPASWVSLAQLLYDFPELG 265 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-----GGSTHHHHHHHHHHHHSGGGC
T ss_pred CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-----CCCHHHHHHHHHHHHhCCCCC
Confidence 999999999999999999999999999999765 68999999999997 455667777665434222468
Q ss_pred ChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHH--HhcC
Q 003918 603 KLERARELFENAVETAPADAVKPLYLQYAKLEEDYG-----LAKRAMKVYDQATKAVPNHEKLGMYEIYIARAA--EIFG 675 (786)
Q Consensus 603 ~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g-----~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~--~~~~ 675 (786)
++++|...|+++.+.. +...+..+|.++. .| ++++|+..|+++. |.++......+.+.... ...+
T Consensus 266 d~~~A~~~~~~Aa~~g----~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d 337 (452)
T 3e4b_A 266 DVEQMMKYLDNGRAAD----QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVY 337 (452)
T ss_dssp CHHHHHHHHHHHHHTT----CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCC
T ss_pred CHHHHHHHHHHHHHCC----CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcC
Confidence 9999999999999764 4678999999988 56 9999999999998 66666666666554210 0238
Q ss_pred hhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH----cCChHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003918 676 VPKTREIYEQAIESGLPDKDVKAMCLKYAELEKS----LGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNEDT 751 (786)
Q Consensus 676 ~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~G~~~~ 751 (786)
+++|+..|+++.+.|.|. ....+|.++.. ..+.++|..+|.+|.+..+++ +......+......++..+
T Consensus 338 ~~~A~~~~~~Aa~~g~~~-----A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~~~~~~~~ 410 (452)
T 3e4b_A 338 PQKALDHLLTAARNGQNS-----ADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQLEAPLTPAQRAE 410 (452)
T ss_dssp HHHHHHHHHHHHTTTCTT-----HHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHhhChHH-----HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCHHHHHH
Confidence 999999999999874443 77888988875 468999999999999874332 3333333322233345666
Q ss_pred HHHHHHHH
Q 003918 752 FREMLRIK 759 (786)
Q Consensus 752 a~~~~~~~ 759 (786)
|..+.+..
T Consensus 411 a~~~~~~~ 418 (452)
T 3e4b_A 411 GQRLVQQE 418 (452)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76666533
No 64
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.75 E-value=5.5e-16 Score=156.93 Aligned_cols=231 Identities=11% Similarity=0.071 Sum_probs=197.3
Q ss_pred CCCCHHHHHHHHHhhc--CCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHH----cCChhHHHHHHHHHHhccC
Q 003918 381 NPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYET----YKDIANARVIFDKAVQVNY 454 (786)
Q Consensus 381 ~p~~~~~~~~~~~~~~--~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p 454 (786)
+|.++.+++.++..+. |++++|+..|+++++ | .++.++..+|.++.. .+++++|+..|+++++.+
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~-----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~- 72 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD---L-----KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN- 72 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---T-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH---C-----CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-
Confidence 5778888888888774 899999999999995 2 467899999999999 999999999999999875
Q ss_pred CChhhHHHHHHHHHHHHHh----ccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHH---
Q 003918 455 KTVDHLASIWCEWAEMELR----HKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEES--- 527 (786)
Q Consensus 455 ~~~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 527 (786)
++ ..+..++.++.. .+++++|+..|++++.... +..+..++.++..
T Consensus 73 -~~----~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~----------------------~~a~~~lg~~~~~~~~ 125 (273)
T 1ouv_A 73 -YS----NGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKY----------------------AEGCASLGGIYHDGKV 125 (273)
T ss_dssp -CH----HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC----------------------HHHHHHHHHHHHHCSS
T ss_pred -CH----HHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCC----------------------ccHHHHHHHHHHcCCC
Confidence 45 889999999999 9999999999999997643 5788889999999
Q ss_pred -cCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHH----cccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHh-CC
Q 003918 528 -LGNLESTRAVYERILDLRIATPQIIINYALLLEE----HKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRY-GK 601 (786)
Q Consensus 528 -~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~-~~ 601 (786)
.+++++|+..|+++++. +++.++..+|.++.. .+++++|+..|+++++. .++.++..++..+..-. ..
T Consensus 126 ~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 126 VTRDFKKAVEYFTKACDL--NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp SCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSC
T ss_pred cccCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCC
Confidence 99999999999999997 478999999999999 99999999999999985 34566666554443200 15
Q ss_pred CChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCC
Q 003918 602 TKLERARELFENAVETAPADAVKPLYLQYAKLEED----YGLAKRAMKVYDQATKAVPNH 657 (786)
Q Consensus 602 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~~l~~~p~~ 657 (786)
+++++|+..|+++++..| ...+..++.++.. .|++++|...|+++++..|++
T Consensus 200 ~~~~~A~~~~~~a~~~~~----~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 200 KNFKEALARYSKACELEN----GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp CCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred ccHHHHHHHHHHHHhCCC----HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 789999999999999866 4688999999999 999999999999999998853
No 65
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.74 E-value=4.8e-16 Score=152.70 Aligned_cols=202 Identities=11% Similarity=0.050 Sum_probs=166.8
Q ss_pred CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccC-CChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhh
Q 003918 421 KPHTLWVAFAKLYETYKDIANARVIFDKAVQVNY-KTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRV 499 (786)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 499 (786)
.++..|...|..+...|++++|+..|++++..+| .+. .++..++.++...|++++|+..|++++...|
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p------- 73 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDS----VTAYNCGVCADNIKKYKEAADYFDIAIKKNY------- 73 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-------
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCc----HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-------
Confidence 3568999999999999999999999999999998 676 7788899999999999999999999999999
Q ss_pred hccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCH-------HHHHHHHHHHHHcccHHHHHHHH
Q 003918 500 AADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATP-------QIIINYALLLEEHKYFEDAFRVY 572 (786)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~~~~~~~~~g~~~~A~~~~ 572 (786)
++..+|..+|.++...|++++|+..|+++++.+|+++ .+|..+|.++...|++++|+..|
T Consensus 74 -------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~ 140 (228)
T 4i17_A 74 -------------NLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENY 140 (228)
T ss_dssp -------------SHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -------------chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHH
Confidence 7889999999999999999999999999999999999 66888999999999999999999
Q ss_pred HHHHhhcCCCC--hHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003918 573 ERGVKIFKYPH--VKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQA 650 (786)
Q Consensus 573 ~~al~~~~~p~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~ 650 (786)
+++++. +|. +..+|..++..+ ...+...++++....+. ....+ .+......|.+++|+..|+++
T Consensus 141 ~~al~~--~p~~~~~~~~~~l~~~~--------~~~~~~~~~~a~~~~~~--~~~~~--~~~~~~~~~~~~~A~~~~~~a 206 (228)
T 4i17_A 141 KHATDV--TSKKWKTDALYSLGVLF--------YNNGADVLRKATPLASS--NKEKY--ASEKAKADAAFKKAVDYLGEA 206 (228)
T ss_dssp HHHTTS--SCHHHHHHHHHHHHHHH--------HHHHHHHHHHHGGGTTT--CHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhc--CCCcccHHHHHHHHHHH--------HHHHHHHHHHHHhcccC--CHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 999997 688 778888755433 34466677888777665 32322 233344466778888888888
Q ss_pred HhcCCCCchh
Q 003918 651 TKAVPNHEKL 660 (786)
Q Consensus 651 l~~~p~~~~~ 660 (786)
++..|+++..
T Consensus 207 ~~l~p~~~~~ 216 (228)
T 4i17_A 207 VTLSPNRTEI 216 (228)
T ss_dssp HHHCTTCHHH
T ss_pred hhcCCCCHHH
Confidence 8888776544
No 66
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.74 E-value=6.8e-17 Score=177.02 Aligned_cols=215 Identities=9% Similarity=-0.017 Sum_probs=174.1
Q ss_pred cCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhhccCCHHHHH
Q 003918 475 KNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNL-ESTRAVYERILDLRIATPQIII 553 (786)
Q Consensus 475 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~ 553 (786)
+.+++++..+++.....| .+..+|..+|.++...|++ ++|+..|+++++.+|+++.+|.
T Consensus 82 ~~~~~al~~l~~~~~~~~--------------------~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~ 141 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQ--------------------VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWN 141 (474)
T ss_dssp HHHHHHHHHHHHHHTTCC--------------------CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccCc--------------------hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHH
Confidence 446778888888888888 7889999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCC---------CChHHHHHHHHHHHhhCCccCcH
Q 003918 554 NYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGK---------TKLERARELFENAVETAPADAVK 624 (786)
Q Consensus 554 ~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~ 624 (786)
.+|.++...|++++|+..|+++++. +|+ ..+|..++..+. .. |++++|+..|+++++..|+ +.
T Consensus 142 ~lg~~~~~~g~~~~A~~~~~~al~~--~p~-~~~~~~lg~~~~---~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~~ 213 (474)
T 4abn_A 142 QLGEVYWKKGDVTSAHTCFSGALTH--CKN-KVSLQNLSMVLR---QLQTDSGDEHSRHVMDSVRQAKLAVQMDVL--DG 213 (474)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTT--CCC-HHHHHHHHHHHT---TCCCSCHHHHHHHHHHHHHHHHHHHHHCTT--CH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CCC-HHHHHHHHHHHH---HhccCChhhhhhhHHHHHHHHHHHHHhCCC--CH
Confidence 9999999999999999999999997 577 577776554433 56 7889999999999999998 67
Q ss_pred HHHHHHHHHHHHc--------CCHHHHHHHHHHHHhcCC---CCchhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCC
Q 003918 625 PLYLQYAKLEEDY--------GLAKRAMKVYDQATKAVP---NHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPD 693 (786)
Q Consensus 625 ~~~~~~a~~~~~~--------g~~~~A~~~~~~~l~~~p---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~ 693 (786)
.+|..+|.++... |++++|+..|+++++..| .++..+.. +...+...|++++|+..|+++++. .|+
T Consensus 214 ~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~--lg~~~~~~g~~~~A~~~~~~al~l-~p~ 290 (474)
T 4abn_A 214 RSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLN--RATLHKYEESYGEALEGFSQAAAL-DPA 290 (474)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHH--HHHHHHHTTCHHHHHHHHHHHHHH-CTT
T ss_pred HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHh-CCC
Confidence 8999999999888 778888888888888877 54444333 333445677888888888888887 777
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 003918 694 KDVKAMCLKYAELEKSLGEIDRARGIYVF 722 (786)
Q Consensus 694 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 722 (786)
.+..+..++.++...|++++|.+.+.+
T Consensus 291 --~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 291 --WPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 355777777777777777777765543
No 67
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.72 E-value=4.1e-15 Score=161.80 Aligned_cols=79 Identities=9% Similarity=0.048 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcH---HHHHHHHHHHHhhCCCCcchhhHHHHHHHHHhcC-----C
Q 003918 82 PEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFI---TKARRTFDRALCALPVTQHDRIWEIYLRFVEQEG-----I 153 (786)
Q Consensus 82 ~~~~~A~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~---~~A~~~~~~al~~~p~~~~~~~w~~~~~~~~~~~-----~ 153 (786)
|++++|...|+++.+. .++.++..++.++...|+. ++|...|++++..+| ..+..++.++...+ +
T Consensus 17 g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~-----~A~~~Lg~~~~~~~~~~~~~ 89 (452)
T 3e4b_A 17 GDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSP-----RAQARLGRLLAAKPGATEAE 89 (452)
T ss_dssp HHHHHHHHHHHHHHHH--TCCTGGGTCC---------------------------------CHHHHHHHHHTC--CCHHH
T ss_pred CCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCH-----HHHHHHHHHHHhCCCCCCcC
Confidence 7888888888888664 5677777777777776666 788888888876533 34555555333333 3
Q ss_pred ChHHHHHHHHHHHcc
Q 003918 154 PIETSLRVYRRYLKY 168 (786)
Q Consensus 154 ~~~~A~~~~~~~l~~ 168 (786)
+ ++|...|+++++.
T Consensus 90 ~-~~A~~~~~~Aa~~ 103 (452)
T 3e4b_A 90 H-HEAESLLKKAFAN 103 (452)
T ss_dssp H-HHHHHHHHHHHHT
T ss_pred H-HHHHHHHHHHHHC
Confidence 4 5666666666654
No 68
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.71 E-value=1.4e-16 Score=181.19 Aligned_cols=173 Identities=13% Similarity=0.135 Sum_probs=147.3
Q ss_pred CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhh
Q 003918 419 VGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRR 498 (786)
Q Consensus 419 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 498 (786)
+++++.++..+|.++.++|++++|+..|+++++.+|++. .+|..+|.++.+.|++++|+..|++++++.|
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~----~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P------ 74 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFA----AAHSNLASVLQQQGKLQEALMHYKEAIRISP------ 74 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------
Confidence 346788888899999999999999999999999888887 8888888888888999999999999988888
Q ss_pred hhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 003918 499 VAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKI 578 (786)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 578 (786)
++..+|..+|.++..+|++++|+..|+++++++|+++.+|.++|.++...|++++|++.|++++++
T Consensus 75 --------------~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l 140 (723)
T 4gyw_A 75 --------------TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL 140 (723)
T ss_dssp --------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 778888888888888899999999999999999988899999999999999999999999999887
Q ss_pred cCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCc
Q 003918 579 FKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPA 620 (786)
Q Consensus 579 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 620 (786)
+|++..+|..++..+. ..|++++|.+.|+++++..|+
T Consensus 141 --~P~~~~a~~~L~~~l~---~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 141 --KPDFPDAYCNLAHCLQ---IVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp --CSCCHHHHHHHHHHHH---HTTCCTTHHHHHHHHHHHHHH
T ss_pred --CCCChHHHhhhhhHHH---hcccHHHHHHHHHHHHHhChh
Confidence 6888888887665444 347788888888888887654
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.70 E-value=5.4e-15 Score=157.76 Aligned_cols=245 Identities=11% Similarity=0.030 Sum_probs=183.4
Q ss_pred HHHhh--cCCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCCh---hhHHHHHH
Q 003918 391 RVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTV---DHLASIWC 465 (786)
Q Consensus 391 ~~~~~--~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~~ 465 (786)
.|..+ .|++++|+..|++++..............++..+|.++...|++++|+..|++++...+... .....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 55544 49999999999999953211101123467899999999999999999999999998765542 23456888
Q ss_pred HHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHh--
Q 003918 466 EWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILD-- 543 (786)
Q Consensus 466 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~-- 543 (786)
.+|.++...|++++|...|++++...+..- .......++..+|.++...|++++|+..|+++++
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--------------~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 254 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEK--------------QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVF 254 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcC--------------ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 899999999999999999999997644100 0002346788899999999999999999999999
Q ss_pred ---hc-cCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcC---CCChHHHHHHHHHHHHHHhCCCC---hHHHHHHHHH
Q 003918 544 ---LR-IATPQIIINYALLLEEHKYFEDAFRVYERGVKIFK---YPHVKDIWVTYLSKFVKRYGKTK---LERARELFEN 613 (786)
Q Consensus 544 ---~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~---~p~~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~ 613 (786)
.+ |..+.++..+|.++...|++++|+..+++++...+ +|.....+.. +..++ ...|+ +.+|..++++
T Consensus 255 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-l~~~~--~~~~~~~~~~~al~~~~~ 331 (383)
T 3ulq_A 255 EESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEF-LKSLY--LSGPDEEAIQGFFDFLES 331 (383)
T ss_dssp HHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH-HHHHH--TSSCCHHHHHHHHHHHHH
T ss_pred HhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHH--hCCCcHHHHHHHHHHHHH
Confidence 45 77788999999999999999999999999998742 2222222222 22222 24566 7778888777
Q ss_pred HHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 003918 614 AVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVP 655 (786)
Q Consensus 614 al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p 655 (786)
. ...|. ...++..+|.++...|++++|...|+++++...
T Consensus 332 ~-~~~~~--~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 332 K-MLYAD--LEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp T-TCHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred C-cCHHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 6 22222 456788899999999999999999999987654
No 70
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.70 E-value=2.5e-16 Score=162.54 Aligned_cols=237 Identities=14% Similarity=0.128 Sum_probs=174.3
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHhcC--------CchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHH
Q 003918 462 SIWCEWAEMELRHKNFKGALELMRRATAE--------PSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLES 533 (786)
Q Consensus 462 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 533 (786)
.++..++..+...|++++|+.+|++++.. .+ ....++..++.++...|++++
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~--------------------~~~~~~~~la~~~~~~g~~~~ 87 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHP--------------------DVATMLNILALVYRDQNKYKD 87 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSH--------------------HHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCH--------------------HHHHHHHHHHHHHHHCCCHHH
Confidence 66666777777777777777777777653 33 456788899999999999999
Q ss_pred HHHHHHHHHhhc--------cCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhc------CCCChHHHHHHHHHHHHHHh
Q 003918 534 TRAVYERILDLR--------IATPQIIINYALLLEEHKYFEDAFRVYERGVKIF------KYPHVKDIWVTYLSKFVKRY 599 (786)
Q Consensus 534 A~~~~~~al~~~--------p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~------~~p~~~~~~~~~~~~~~~~~ 599 (786)
|...|++++... |....++..+|.++...|++++|+..+++++... ..|....++..++..+.
T Consensus 88 A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~--- 164 (311)
T 3nf1_A 88 AANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQ--- 164 (311)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH---
Confidence 999999999873 5556789999999999999999999999999873 12445556666554433
Q ss_pred CCCChHHHHHHHHHHHhh--------CCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---------CchhhH
Q 003918 600 GKTKLERARELFENAVET--------APADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPN---------HEKLGM 662 (786)
Q Consensus 600 ~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~---------~~~~~~ 662 (786)
..|++++|+.+|+++++. .|. ...++..+|.++...|++++|...|+++++..|. ....+.
T Consensus 165 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 242 (311)
T 3nf1_A 165 NQGKYEEVEYYYQRALEIYQTKLGPDDPN--VAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM 242 (311)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHTSCTTCHH--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH
Confidence 568999999999999998 454 5678999999999999999999999999975432 112221
Q ss_pred HHHHH----HHHHHhcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHcc
Q 003918 663 YEIYI----ARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQF 726 (786)
Q Consensus 663 ~~~~~----~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 726 (786)
..... ......+.+.+|...+++++.. .|. ...++..+|.++...|++++|..+|+++++.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 243 HAEEREECKGKQKDGTSFGEYGGWYKACKVD-SPT--VTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp HHHHHHHC-------CCSCCCC----------CHH--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCchhhHHHHHHHHHHHhhcCCC-Cch--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 11111 1122346677888888888877 665 5778999999999999999999999999986
No 71
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.69 E-value=3e-15 Score=146.93 Aligned_cols=210 Identities=12% Similarity=0.123 Sum_probs=173.7
Q ss_pred CCCHHHHHHHHHhhc--CCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhh
Q 003918 382 PHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDH 459 (786)
Q Consensus 382 p~~~~~~~~~~~~~~--~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 459 (786)
|.++..|+..|..+. |++++|+..|++++...++ .+..++..+|.++...|++++|+..|++++..+|+++
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-- 76 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNN-----QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLA-- 76 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHH--
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCC-----CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchH--
Confidence 456678888887774 9999999999999964331 3567888899999999999999999999999999987
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcH-------HHHHHHHHHHHHcCChH
Q 003918 460 LASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSL-------RLWTFYVDLEESLGNLE 532 (786)
Q Consensus 460 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~ 532 (786)
.+|..++.++...|++++|+..|++++...| +++ .+|..+|.++...|+++
T Consensus 77 --~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~ 134 (228)
T 4i17_A 77 --NAYIGKSAAYRDMKNNQEYIATLTEGIKAVP--------------------GNATIEKLYAIYYLKEGQKFQQAGNIE 134 (228)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--------------------TCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred --HHHHHHHHHHHHcccHHHHHHHHHHHHHHCC--------------------CcHHHHHHHHHHHHHHhHHHHHhccHH
Confidence 8999999999999999999999999999988 455 66888999999999999
Q ss_pred HHHHHHHHHHhhccC--CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHH
Q 003918 533 STRAVYERILDLRIA--TPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERAREL 610 (786)
Q Consensus 533 ~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 610 (786)
+|+..|+++++.+|+ ++.+|..+|.++...|+ ..++++... .+.+...+....... .+.+++|+..
T Consensus 135 ~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~-----~~~~~a~~~--~~~~~~~~~~~~~~~-----~~~~~~A~~~ 202 (228)
T 4i17_A 135 KAEENYKHATDVTSKKWKTDALYSLGVLFYNNGA-----DVLRKATPL--ASSNKEKYASEKAKA-----DAAFKKAVDY 202 (228)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH-----HHHHHHGGG--TTTCHHHHHHHHHHH-----HHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHH-----HHHHHHHhc--ccCCHHHHHHHHHHH-----HHHHHHHHHH
Confidence 999999999999999 99999999999987664 456677776 244444443322211 2568999999
Q ss_pred HHHHHhhCCccCcHHHHHHHHHHH
Q 003918 611 FENAVETAPADAVKPLYLQYAKLE 634 (786)
Q Consensus 611 ~~~al~~~p~~~~~~~~~~~a~~~ 634 (786)
|+++++..|+ +..+...++.+.
T Consensus 203 ~~~a~~l~p~--~~~~~~~l~~i~ 224 (228)
T 4i17_A 203 LGEAVTLSPN--RTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHCTT--CHHHHHHHHHHH
T ss_pred HHHHhhcCCC--CHHHHHHHHHHH
Confidence 9999999999 667777666654
No 72
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.68 E-value=4.1e-16 Score=177.28 Aligned_cols=173 Identities=14% Similarity=0.138 Sum_probs=158.1
Q ss_pred cCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChH
Q 003918 453 NYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLE 532 (786)
Q Consensus 453 ~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 532 (786)
.|++. .++..+|.++.+.|++++|+..|++++++.| ++..+|..+|.++..+|+++
T Consensus 5 ~P~~a----~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P--------------------~~~~a~~nLg~~l~~~g~~~ 60 (723)
T 4gyw_A 5 CPTHA----DSLNNLANIKREQGNIEEAVRLYRKALEVFP--------------------EFAAAHSNLASVLQQQGKLQ 60 (723)
T ss_dssp -CHHH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--------------------CCHHHHHHHHHHHHHTTCHH
T ss_pred CCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------------------CCHHHHHHHHHHHHHcCCHH
Confidence 45554 8999999999999999999999999999999 78899999999999999999
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 003918 533 STRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFE 612 (786)
Q Consensus 533 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 612 (786)
+|+..|+++++++|+++.+|.++|.++...|++++|++.|++++++ +|++..+|..++..+. ..|++++|+..|+
T Consensus 61 eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~---~~g~~~eAi~~~~ 135 (723)
T 4gyw_A 61 EALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHK---DSGNIPEAIASYR 135 (723)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH---HTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH---HcCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998 7999999998765554 3488999999999
Q ss_pred HHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 003918 613 NAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPN 656 (786)
Q Consensus 613 ~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~ 656 (786)
++++.+|+ +..++.+++.++...|++++|.+.++++++..|+
T Consensus 136 ~Al~l~P~--~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 136 TALKLKPD--FPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHCSC--CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhCCC--ChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence 99999999 7899999999999999999999999999887653
No 73
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.68 E-value=3.9e-15 Score=158.85 Aligned_cols=306 Identities=9% Similarity=0.070 Sum_probs=213.6
Q ss_pred cCCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHH--HHHHcCChhHHH-----------HHHHHHHhccCCChhhH--
Q 003918 396 EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAK--LYETYKDIANAR-----------VIFDKAVQVNYKTVDHL-- 460 (786)
Q Consensus 396 ~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~--~~~~~~~~~~A~-----------~~~~~al~~~p~~~~~~-- 460 (786)
.+++++|..+++++.+.++... ...+..+++.+.. .....++++.+. ..++++-. .|.+....
T Consensus 25 ~~~~~~A~~l~~~i~~~~~~~~-~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~-~~~~~~~~l~ 102 (383)
T 3ulq_A 25 RFSIPDAEYLRREIKQELDQME-EDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDK-KQARLTGLLE 102 (383)
T ss_dssp TTCHHHHHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHH-HTHHHHHHHH
T ss_pred HcCHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHh-cCCCchhHHH
Confidence 4788999999888765432210 0122333333322 222345555555 66666533 33332111
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 003918 461 ASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYER 540 (786)
Q Consensus 461 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 540 (786)
...+...|.++...|++++|+..|++++...... ........++..+|.++...|+++.|+..|++
T Consensus 103 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--------------~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~ 168 (383)
T 3ulq_A 103 YYFNFFRGMYELDQREYLSAIKFFKKAESKLIFV--------------KDRIEKAEFFFKMSESYYYMKQTYFSMDYARQ 168 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhC--------------CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1244457888899999999999999999862200 00003567889999999999999999999999
Q ss_pred HHhhccCC-------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCCh----HHHHHHHHHHHHHHhCCCChHHHHH
Q 003918 541 ILDLRIAT-------PQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHV----KDIWVTYLSKFVKRYGKTKLERARE 609 (786)
Q Consensus 541 al~~~p~~-------~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~----~~~~~~~~~~~~~~~~~~~~~~A~~ 609 (786)
+++..+.. ..++..+|.++...|++++|+..|++++...+...+ ..++..++..+. ..|++++|+.
T Consensus 169 al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~---~~g~~~~A~~ 245 (383)
T 3ulq_A 169 AYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKN---SQSQYEDAIP 245 (383)
T ss_dssp HHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---HTTCHHHHHH
T ss_pred HHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH---HCCCHHHHHH
Confidence 99985543 358899999999999999999999999987422221 134555443332 4589999999
Q ss_pred HHHHHHh-----hC-CccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc--hh-hHHHHHHHHHHHhcC---hh
Q 003918 610 LFENAVE-----TA-PADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHE--KL-GMYEIYIARAAEIFG---VP 677 (786)
Q Consensus 610 ~~~~al~-----~~-p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~--~~-~~~~~~~~~~~~~~~---~~ 677 (786)
.|+++++ .. |. ...++..+|.++...|++++|...++++++..+... .. ..+..+...+...|+ +.
T Consensus 246 ~~~~al~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 323 (383)
T 3ulq_A 246 YFKRAIAVFEESNILPS--LPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQ 323 (383)
T ss_dssp HHHHHHHHHHHTTCGGG--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHH
T ss_pred HHHHHHHHHHhhccchh--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHH
Confidence 9999999 45 55 578899999999999999999999999998765321 11 112233344445677 77
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHcc
Q 003918 678 KTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQF 726 (786)
Q Consensus 678 ~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 726 (786)
+|..++++.- . .|. ...++..+|.++...|++++|..+|+++++.
T Consensus 324 ~al~~~~~~~-~-~~~--~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 324 GFFDFLESKM-L-YAD--LEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHTT-C-HHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCc-C-HHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 7777777751 1 222 4568888999999999999999999999976
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.68 E-value=2.4e-16 Score=162.72 Aligned_cols=263 Identities=15% Similarity=0.148 Sum_probs=190.2
Q ss_pred hcCCCCHHHHHHHHHhhc--CCchhHHHHHHHHHhccCCCc--cCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhcc-
Q 003918 379 RQNPHNVEQWHRRVKIFE--GNPTKQILTYTEAVRTVDPMK--AVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVN- 453 (786)
Q Consensus 379 ~~~p~~~~~~~~~~~~~~--~~~~~a~~~~~~al~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~- 453 (786)
..+|.....|..++..+. |++++|+..|++++....... ..+....++..+|.++...|++++|+..|++++...
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 21 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 100 (311)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 456777888888887774 999999999999995210000 012567889999999999999999999999999864
Q ss_pred ----CCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcC
Q 003918 454 ----YKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLG 529 (786)
Q Consensus 454 ----p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 529 (786)
++++ ....++..++.++...|++++|..+|++++....... + ........++..++.++...|
T Consensus 101 ~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~----~--------~~~~~~~~~~~~la~~~~~~~ 167 (311)
T 3nf1_A 101 KTLGKDHP-AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL----G--------KDHPDVAKQLNNLALLCQNQG 167 (311)
T ss_dssp HHHCTTCH-HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH----C--------TTCHHHHHHHHHHHHHHHTTT
T ss_pred HHhCCCCh-HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhc----C--------CCChHHHHHHHHHHHHHHHcC
Confidence 3222 2347889999999999999999999999997631000 0 000045678889999999999
Q ss_pred ChHHHHHHHHHHHhh--------ccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcC-------CCChHHHHHHHHHH
Q 003918 530 NLESTRAVYERILDL--------RIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFK-------YPHVKDIWVTYLSK 594 (786)
Q Consensus 530 ~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~-------~p~~~~~~~~~~~~ 594 (786)
++++|+..|++++.. .|..+.++..+|.++...|++++|+..+++++...+ .|.....|......
T Consensus 168 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (311)
T 3nf1_A 168 KYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEER 247 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHH
Confidence 999999999999998 666677899999999999999999999999998521 12222333332111
Q ss_pred HH---HHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 003918 595 FV---KRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPN 656 (786)
Q Consensus 595 ~~---~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~ 656 (786)
.. .....+.+.++...+++++...|. ...++..+|.++...|++++|..+|+++++..|.
T Consensus 248 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 248 EECKGKQKDGTSFGEYGGWYKACKVDSPT--VTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHC-------CCSCCCC---------CHH--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHhcCchhhHHHHHHHHHHHhhcCCCCch--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 11 001235567788889999888887 6789999999999999999999999999987764
No 75
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.67 E-value=1.2e-14 Score=146.77 Aligned_cols=230 Identities=11% Similarity=0.147 Sum_probs=200.3
Q ss_pred chhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcC--ChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHH----H
Q 003918 399 PTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYK--DIANARVIFDKAVQVNYKTVDHLASIWCEWAEME----L 472 (786)
Q Consensus 399 ~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~----~ 472 (786)
.++|+..++++| .++| .+..+|...+.+....| +++++...+++++..+|.+. .+|...+.+. .
T Consensus 49 s~~aL~~t~~~L-~~nP-----~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y----~aW~~R~~iL~~~~~ 118 (306)
T 3dra_A 49 SERALHITELGI-NELA-----SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNY----QIWNYRQLIIGQIME 118 (306)
T ss_dssp SHHHHHHHHHHH-HHCT-----TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCC----HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH-HHCc-----HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccH----HHHHHHHHHHHHHHH
Confidence 468999999999 5787 78999999999999999 99999999999999999998 9999998888 5
Q ss_pred hc---cCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChH--HHHHHHHHHHhhccC
Q 003918 473 RH---KNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLE--STRAVYERILDLRIA 547 (786)
Q Consensus 473 ~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~A~~~~~~al~~~p~ 547 (786)
.. +++++++.++++++...| .+..+|...+.+....|.++ ++++.++++++.+|.
T Consensus 119 ~l~~~~~~~~EL~~~~~~l~~~p--------------------kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~ 178 (306)
T 3dra_A 119 LNNNDFDPYREFDILEAMLSSDP--------------------KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK 178 (306)
T ss_dssp HTTTCCCTHHHHHHHHHHHHHCT--------------------TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT
T ss_pred hccccCCHHHHHHHHHHHHHhCC--------------------CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC
Confidence 55 789999999999999999 89999999999999999988 999999999999999
Q ss_pred CHHHHHHHHHHHHHccc------HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhC---
Q 003918 548 TPQIIINYALLLEEHKY------FEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETA--- 618 (786)
Q Consensus 548 ~~~~~~~~~~~~~~~g~------~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--- 618 (786)
+..+|...+.+....|. ++++++.+++++.. +|.+..+|... ..++...+ ...+.+....+++++..
T Consensus 179 N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--~p~n~SaW~y~-~~ll~~~~-~~~~~~~~~~~~~~~~~~~~ 254 (306)
T 3dra_A 179 NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--CPQNPSTWNYL-LGIHERFD-RSITQLEEFSLQFVDLEKDQ 254 (306)
T ss_dssp CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--CSSCHHHHHHH-HHHHHHTT-CCGGGGHHHHHTTEEGGGTE
T ss_pred CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--CCCCccHHHHH-HHHHHhcC-CChHHHHHHHHHHHhccCCC
Confidence 99999999999998887 89999999999997 79999999864 45555533 34666778888888765
Q ss_pred CccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCCchhhHHH
Q 003918 619 PADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATK-AVPNHEKLGMYE 664 (786)
Q Consensus 619 p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~-~~p~~~~~~~~~ 664 (786)
|. +..++..++.++.+.|+.++|+++|+.+.+ .+|....++.+.
T Consensus 255 ~~--s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~ 299 (306)
T 3dra_A 255 VT--SSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQ 299 (306)
T ss_dssp ES--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred CC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHH
Confidence 55 678899999999999999999999999986 688765555443
No 76
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.67 E-value=1.1e-14 Score=146.88 Aligned_cols=235 Identities=13% Similarity=0.128 Sum_probs=189.7
Q ss_pred cCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhhccCCHHHH
Q 003918 475 KNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLG--NLESTRAVYERILDLRIATPQII 552 (786)
Q Consensus 475 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~ 552 (786)
...++|+.++.+++.+.| ....+|...+.+....| .+++++.+++.++..+|.+..+|
T Consensus 47 e~s~~aL~~t~~~L~~nP--------------------~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW 106 (306)
T 3dra_A 47 EYSERALHITELGINELA--------------------SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIW 106 (306)
T ss_dssp CCSHHHHHHHHHHHHHCT--------------------TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHH
T ss_pred CCCHHHHHHHHHHHHHCc--------------------HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHH
Confidence 344688889999999888 78888998888888888 89999999999999999999999
Q ss_pred HHHHHHH----HHc---ccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChH--HHHHHHHHHHhhCCccCc
Q 003918 553 INYALLL----EEH---KYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLE--RARELFENAVETAPADAV 623 (786)
Q Consensus 553 ~~~~~~~----~~~---g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~--~A~~~~~~al~~~p~~~~ 623 (786)
...+.++ ... +++++++.+++++++. +|.+..+|..-. .+...+ |.++ ++.+.++++++.+|. +
T Consensus 107 ~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~--~pkny~aW~~R~-~vl~~l--~~~~~~~EL~~~~~~i~~d~~--N 179 (306)
T 3dra_A 107 NYRQLIIGQIMELNNNDFDPYREFDILEAMLSS--DPKNHHVWSYRK-WLVDTF--DLHNDAKELSFVDKVIDTDLK--N 179 (306)
T ss_dssp HHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH--CTTCHHHHHHHH-HHHHHT--TCTTCHHHHHHHHHHHHHCTT--C
T ss_pred HHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh--CCCCHHHHHHHH-HHHHHh--cccChHHHHHHHHHHHHhCCC--C
Confidence 9988888 666 6788999999999987 799999998654 444443 4566 889999999999998 6
Q ss_pred HHHHHHHHHHHHHcCC------HHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcC-hhHHHHHHHHHHHhc--CCCh
Q 003918 624 KPLYLQYAKLEEDYGL------AKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFG-VPKTREIYEQAIESG--LPDK 694 (786)
Q Consensus 624 ~~~~~~~a~~~~~~g~------~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~--~p~~ 694 (786)
..+|...+.+....|. ++++++.+.+++..+|.+...+.+...+.. +.|. .+.+.+..++++..+ .|.
T Consensus 180 ~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~--~~~~~~~~~~~~~~~~~~~~~~~~~- 256 (306)
T 3dra_A 180 NSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHE--RFDRSITQLEEFSLQFVDLEKDQVT- 256 (306)
T ss_dssp HHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH--HTTCCGGGGHHHHHTTEEGGGTEES-
T ss_pred HHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHH--hcCCChHHHHHHHHHHHhccCCCCC-
Confidence 7888888888887776 889999999999999988777777776653 4444 455677777777652 144
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCCCHHHHHHHHH
Q 003918 695 DVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHE 741 (786)
Q Consensus 695 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~ 741 (786)
++.++..++.++.+.|+.++|.++|+++.+..+|- ....|...+.
T Consensus 257 -s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpi-r~~yW~~~~~ 301 (306)
T 3dra_A 257 -SSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPI-RSNFWDYQIS 301 (306)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGG-GHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChH-HHHHHHHHHh
Confidence 56788888999999999999999999998744787 6899987654
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.67 E-value=4.5e-14 Score=150.29 Aligned_cols=247 Identities=13% Similarity=0.046 Sum_probs=185.7
Q ss_pred HHHHHHHhh--cCCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCCh---hhHH
Q 003918 387 QWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTV---DHLA 461 (786)
Q Consensus 387 ~~~~~~~~~--~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~ 461 (786)
.++..|..+ .|++++|+..|++++.........+....++..+|.++...|+++.|+..|++++...+... ....
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 344445544 49999999999999953221111123567889999999999999999999999998765432 2345
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003918 462 SIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERI 541 (786)
Q Consensus 462 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 541 (786)
.++..+|.++...|++++|...|++++...+.. +.......++..+|.++...|++++|+..|+++
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~--------------~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~a 248 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDI--------------QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA 248 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--------------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 788899999999999999999999999753300 000023467888999999999999999999999
Q ss_pred Hh-----hccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcC---CCChHHHHHHHHHHHHHHhCCCC---hHHHHHH
Q 003918 542 LD-----LRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFK---YPHVKDIWVTYLSKFVKRYGKTK---LERAREL 610 (786)
Q Consensus 542 l~-----~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~---~p~~~~~~~~~~~~~~~~~~~~~---~~~A~~~ 610 (786)
++ .+|..+.++..+|.++...|++++|+..+++++...+ +|.....+.. +..++ ...++ +.+|...
T Consensus 249 l~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-l~~ly--~~~~~~~~~~~al~~ 325 (378)
T 3q15_A 249 AKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLF-LQAVY--KETVDERKIHDLLSY 325 (378)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHH-HHHHH--SSSCCHHHHHHHHHH
T ss_pred HHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHH--hCCCcHHHHHHHHHH
Confidence 99 7788889999999999999999999999999999853 2333332222 22222 13455 7777777
Q ss_pred HHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 003918 611 FENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKA 653 (786)
Q Consensus 611 ~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 653 (786)
+++. ...|. ...++..+|.++...|++++|...|+++++.
T Consensus 326 ~~~~-~~~~~--~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 326 FEKK-NLHAY--IEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHT-TCHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhC-CChhH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 7762 12222 3567788999999999999999999998864
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.64 E-value=1.6e-14 Score=136.13 Aligned_cols=171 Identities=11% Similarity=0.061 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 003918 461 ASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYER 540 (786)
Q Consensus 461 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 540 (786)
...+...+..+...|++++|+..|++++...| .+..++..++.++...|++++|...|++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 67 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADA--------------------FDVDVALHLGIAYVKTGAVDRGTELLER 67 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS--------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc--------------------cChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 35666777777777777788777777777777 5667777777777777888888888888
Q ss_pred HHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCc
Q 003918 541 ILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPA 620 (786)
Q Consensus 541 al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 620 (786)
+++..|.++.++..+|.++...|++++|+..+++++.. .|.+..+|..++..+. ..|++++|...|+++++..|.
T Consensus 68 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~---~~~~~~~A~~~~~~~~~~~~~ 142 (186)
T 3as5_A 68 SLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALD---NLGRFDEAIDSFKIALGLRPN 142 (186)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCTT
T ss_pred HHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHH---HcCcHHHHHHHHHHHHhcCcc
Confidence 88777777777888888888888888888888888776 5777777766554433 346788888888888887777
Q ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 003918 621 DAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHE 658 (786)
Q Consensus 621 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~ 658 (786)
+..++..+|.++...|++++|...++++++..|+++
T Consensus 143 --~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 143 --EGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGAS 178 (186)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred --chHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Confidence 567777788888888888888888888887777653
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.63 E-value=1.7e-13 Score=145.53 Aligned_cols=285 Identities=12% Similarity=0.026 Sum_probs=208.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhccCCCh-hhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhcc
Q 003918 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYKTV-DHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAAD 502 (786)
Q Consensus 424 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 502 (786)
.++...|.++...|++++|+..+++++...|.+. .....++..++.++...|++++|...+++++...+..-
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~------- 87 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD------- 87 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcC-------
Confidence 4556777888899999999999999999877553 12234667788888999999999999999987654100
Q ss_pred CChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcc--------CCHHHHHHHHHHHHHcccHHHHHHHHHH
Q 003918 503 GNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRI--------ATPQIIINYALLLEEHKYFEDAFRVYER 574 (786)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 574 (786)
........+..++.++...|++++|+..|++++...+ ....++..+|.++...|++++|...+++
T Consensus 88 -------~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 160 (373)
T 1hz4_A 88 -------VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARS 160 (373)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -------cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 0001234456778889999999999999999998753 2345677899999999999999999999
Q ss_pred HHhhcCCC---ChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHH-----HHHHHHHHcCCHHHHHHH
Q 003918 575 GVKIFKYP---HVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYL-----QYAKLEEDYGLAKRAMKV 646 (786)
Q Consensus 575 al~~~~~p---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~-----~~a~~~~~~g~~~~A~~~ 646 (786)
++...+.. .....+...+.... ..|++++|...+++++...+.......+. ..+.++...|++++|...
T Consensus 161 al~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 237 (373)
T 1hz4_A 161 GIEVLSSYQPQQQLQCLAMLIQCSL---ARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANW 237 (373)
T ss_dssp HHHHTTTSCGGGGHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhhccCcHHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99874321 12334444333333 34889999999999998743311111222 234557789999999999
Q ss_pred HHHHHhcCCCCchh--hHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCC---h-hHHHHHHHHHHHHHHcCChHHHHHHH
Q 003918 647 YDQATKAVPNHEKL--GMYEIYIARAAEIFGVPKTREIYEQAIESGLPD---K-DVKAMCLKYAELEKSLGEIDRARGIY 720 (786)
Q Consensus 647 ~~~~l~~~p~~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~---~-~~~~~~~~~~~~~~~~g~~~~A~~~~ 720 (786)
+++++...|..+.. ..+..+...+...|++++|...+++++.. .+. . ....++..++.++...|+.++|...|
T Consensus 238 ~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~-~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l 316 (373)
T 1hz4_A 238 LRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN-ARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVL 316 (373)
T ss_dssp HHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999877653222 12344445556789999999999999876 221 1 12347788899999999999999999
Q ss_pred HHHHcc
Q 003918 721 VFASQF 726 (786)
Q Consensus 721 ~~al~~ 726 (786)
.+++..
T Consensus 317 ~~al~~ 322 (373)
T 1hz4_A 317 LDALKL 322 (373)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999986
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.62 E-value=2.2e-13 Score=144.98 Aligned_cols=307 Identities=10% Similarity=0.047 Sum_probs=209.8
Q ss_pred cCCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHH--HHHcCChhHHH---------HHHHHHHhcc-CCChhhHHHH
Q 003918 396 EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKL--YETYKDIANAR---------VIFDKAVQVN-YKTVDHLASI 463 (786)
Q Consensus 396 ~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~--~~~~~~~~~A~---------~~~~~al~~~-p~~~~~~~~~ 463 (786)
.+++++|..+++++.+.++.... ...+.+++.+..+ ....+.+..+. ..++++-... +.+.......
T Consensus 25 ~~~~~~A~~l~~~i~~~~~~~~~-~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~~ 103 (378)
T 3q15_A 25 QFSVPDAEILKAEVEQDIQQMEE-DQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYS 103 (378)
T ss_dssp TTCHHHHHHHHHHHHHHGGGBCC-CHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHHHHHHH
T ss_pred HcCHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccHHHHHH
Confidence 47889999999886654332111 1223333433332 12233333344 6666543321 1111111235
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003918 464 WCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILD 543 (786)
Q Consensus 464 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 543 (786)
+...|..+...|++++|+..|++++...+..- .......++..+|.++...|+++.|...|+++++
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~--------------~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~ 169 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVS--------------DDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALD 169 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCC--------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCC--------------ChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 66678888999999999999999997643100 0013467888999999999999999999999999
Q ss_pred hccCC-------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCC----hHHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 003918 544 LRIAT-------PQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPH----VKDIWVTYLSKFVKRYGKTKLERARELFE 612 (786)
Q Consensus 544 ~~p~~-------~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 612 (786)
..+.. ..++..+|.++...|++++|++.|++++...+... ...++..++..+. ..|++++|+..|+
T Consensus 170 ~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~---~~~~~~~A~~~~~ 246 (378)
T 3q15_A 170 IYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYD---RSGDDQMAVEHFQ 246 (378)
T ss_dssp HHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---HHTCHHHHHHHHH
T ss_pred HHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---HCCCHHHHHHHHH
Confidence 86532 35788999999999999999999999998742111 1234444443333 2388999999999
Q ss_pred HHHh-----hCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch--hh-HHHHHHHHHHHhcC---hhHHHH
Q 003918 613 NAVE-----TAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEK--LG-MYEIYIARAAEIFG---VPKTRE 681 (786)
Q Consensus 613 ~al~-----~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~-~~~~~~~~~~~~~~---~~~A~~ 681 (786)
++++ ..|. ...++..+|.++...|++++|...++++++..+.... .. ....+...+...++ +.+|..
T Consensus 247 ~al~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~ 324 (378)
T 3q15_A 247 KAAKVSREKVPDL--LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLS 324 (378)
T ss_dssp HHHHHHHHHCGGG--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHhhCChh--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 9999 6666 5788999999999999999999999999998775322 21 22222223334455 677777
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHcc
Q 003918 682 IYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQF 726 (786)
Q Consensus 682 ~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 726 (786)
++++. ........++..+|.++...|++++|..+|+++++.
T Consensus 325 ~~~~~----~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 325 YFEKK----NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhC----CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 77762 112224567888999999999999999999999875
No 81
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.62 E-value=9.3e-15 Score=140.97 Aligned_cols=187 Identities=10% Similarity=0.005 Sum_probs=122.4
Q ss_pred cHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhc
Q 003918 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAA 501 (786)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 501 (786)
++..++..|..+...|++++|+..|++++..+|+++ .+|...+ +.....
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~~~-------------------~~~~~~-------- 51 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRT----EMYYWTN-------------------VDKNSE-------- 51 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHH----HHHHHHH-------------------SCTTSH--------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh----HHHHHhh-------------------hcchhh--------
Confidence 566778889999999999999999999999999876 5555411 000110
Q ss_pred cCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCC
Q 003918 502 DGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKY 581 (786)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~ 581 (786)
..+.+...+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++. +
T Consensus 52 -----------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~ 118 (208)
T 3urz_A 52 -----------ISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--E 118 (208)
T ss_dssp -----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--C
T ss_pred -----------hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--C
Confidence 123445556677777777777777777777777777777777777777777777777777777776 5
Q ss_pred CChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 003918 582 PHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPN 656 (786)
Q Consensus 582 p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~ 656 (786)
|+++.+|..++..+... +.+....+...|++++...|. ...+...|..+...|++++|+..|+++++..|+
T Consensus 119 P~~~~a~~~lg~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 119 ADNLAANIFLGNYYYLT-AEQEKKKLETDYKKLSSPTKM---QYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp TTCHHHHHHHHHHHHHH-HHHHHHHHHHHHC---CCCHH---HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred CCCHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHhCCCch---hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 77777776655443322 112345566666666543332 234555666666677777777777777777775
No 82
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.62 E-value=1.8e-14 Score=135.72 Aligned_cols=171 Identities=9% Similarity=0.106 Sum_probs=149.0
Q ss_pred cHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhc
Q 003918 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAA 501 (786)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 501 (786)
....+..+|..+...|++++|+..|++++..+|.+. .++..++.++...|++++|..++++++...|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--------- 73 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDV----DVALHLGIAYVKTGAVDRGTELLERSLADAP--------- 73 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---------
Confidence 456788888899999999999999999999888886 8888899999999999999999999998888
Q ss_pred cCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCC
Q 003918 502 DGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKY 581 (786)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~ 581 (786)
.+..+|..++.++...|++++|...|++++...|.++.++..+|.++...|++++|+..+++++.. .
T Consensus 74 -----------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~ 140 (186)
T 3as5_A 74 -----------DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL--R 140 (186)
T ss_dssp -----------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred -----------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--C
Confidence 677888888999999999999999999999999999999999999999999999999999999987 6
Q ss_pred CChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCcc
Q 003918 582 PHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPAD 621 (786)
Q Consensus 582 p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 621 (786)
|.++.+|..++..+. ..|++++|...++++++..|++
T Consensus 141 ~~~~~~~~~la~~~~---~~~~~~~A~~~~~~~~~~~~~~ 177 (186)
T 3as5_A 141 PNEGKVHRAIAFSYE---QMGRHEEALPHFKKANELDEGA 177 (186)
T ss_dssp TTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHCC
T ss_pred ccchHHHHHHHHHHH---HcCCHHHHHHHHHHHHHcCCCc
Confidence 888888887665444 3478999999999999887763
No 83
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.62 E-value=1.4e-14 Score=139.62 Aligned_cols=185 Identities=10% Similarity=0.082 Sum_probs=140.3
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003918 462 SIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERI 541 (786)
Q Consensus 462 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 541 (786)
..++..+..+...|++++|+..|++++...| +++.+|...+ .....
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--------------------~~~~~~~~~~-----~~~~~--------- 50 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNI--------------------DRTEMYYWTN-----VDKNS--------- 50 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCH--------------------HHHHHHHHHH-----SCTTS---------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--------------------CChHHHHHhh-----hcchh---------
Confidence 5667788888899999999999999999999 5666655422 11110
Q ss_pred HhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCcc
Q 003918 542 LDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPAD 621 (786)
Q Consensus 542 l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 621 (786)
...+.+...+|.++...|++++|+..|+++++. +|+++.+|..++..+.. .|++++|+..|+++++.+|+
T Consensus 51 ----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~P~- 120 (208)
T 3urz_A 51 ----EISSKLATELALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVC---RGQEKDALRMYEKILQLEAD- 120 (208)
T ss_dssp ----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHCTT-
T ss_pred ----hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCC-
Confidence 112455678999999999999999999999998 79999999987766553 38899999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChh
Q 003918 622 AVKPLYLQYAKLEEDYGL--AKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKD 695 (786)
Q Consensus 622 ~~~~~~~~~a~~~~~~g~--~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~ 695 (786)
+..+|..+|.++...|. ...+...|++++...|. .......+... ...|++++|+..|+++++. .|+..
T Consensus 121 -~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~g~~~--~~~~~~~~A~~~~~~al~l-~P~~~ 191 (208)
T 3urz_A 121 -NLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYRDGLSK--LFTTRYEKARNSLQKVILR-FPSTE 191 (208)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHHHHHHH--HHHHTHHHHHHHHHHHTTT-SCCHH
T ss_pred -CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHHHHHHH--HHccCHHHHHHHHHHHHHh-CCCHH
Confidence 78999999999877654 45667778777643221 11222233333 4678999999999999999 99844
No 84
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.62 E-value=1.2e-14 Score=166.59 Aligned_cols=182 Identities=13% Similarity=0.019 Sum_probs=117.7
Q ss_pred hcCCCCHHHHHHHHHhhcCCchhHHHHHHHHHh-------ccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 003918 379 RQNPHNVEQWHRRVKIFEGNPTKQILTYTEAVR-------TVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQ 451 (786)
Q Consensus 379 ~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~al~-------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 451 (786)
..+|.++..++..+ ...|++++|+..|++++. ..+| .+..+|..+|..+...|++++|+..|+++++
T Consensus 388 ~~~p~~~~a~~~~a-~~~~~~~~A~~~~~~al~~~~~~~~~~~p-----~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 461 (681)
T 2pzi_A 388 LVDPTDVAASVLQA-TVLSQPVQTLDSLRAARHGALDADGVDFS-----ESVELPLMEVRALLDLGDVAKATRKLDDLAE 461 (681)
T ss_dssp CCCTTSTTHHHHHH-TTTCCHHHHHHHHHHHHTC-------CCT-----TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCCCCCcchHHhhc-ccccCHHHHHHHHHHhhhhcccccccccc-----cchhHHHHHHHHHHhcCCHHHHHHHHHHHhc
Confidence 34566666555544 334666666666666661 1233 4566666666666666666666666666666
Q ss_pred ccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCCh
Q 003918 452 VNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNL 531 (786)
Q Consensus 452 ~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 531 (786)
.+|++. .+|..++.++...|++++|+..|+++++..| ++...|..++.++...|++
T Consensus 462 ~~p~~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P--------------------~~~~~~~~lg~~~~~~g~~ 517 (681)
T 2pzi_A 462 RVGWRW----RLVWYRAVAELLTGDYDSATKHFTEVLDTFP--------------------GELAPKLALAATAELAGNT 517 (681)
T ss_dssp HHCCCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHST--------------------TCSHHHHHHHHHHHHHTCC
T ss_pred cCcchH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------------------CChHHHHHHHHHHHHcCCh
Confidence 666665 6666666666666666666666666666666 5566666666666666666
Q ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHH
Q 003918 532 ESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLS 593 (786)
Q Consensus 532 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~ 593 (786)
++ +..|+++++.+|+++.+|+++|.++...|++++|+..|+++++. +|.+..+|...+.
T Consensus 518 ~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~~~~ 576 (681)
T 2pzi_A 518 DE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPT--SRHFTTARLTSAV 576 (681)
T ss_dssp CT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT--STTHHHHHHHHHH
T ss_pred HH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhccc--CcccHHHHHHHHH
Confidence 66 66666666666666666666666666666666666666666665 5666666665443
No 85
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.62 E-value=4.8e-15 Score=134.48 Aligned_cols=146 Identities=15% Similarity=0.193 Sum_probs=122.5
Q ss_pred HHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhcc
Q 003918 467 WAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRI 546 (786)
Q Consensus 467 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p 546 (786)
+|.++...|++++|+..+++++..+| ..+..++.+|.++...|++++|+..|+++++.+|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p--------------------~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p 62 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPR--------------------QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE 62 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHH--------------------HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCc--------------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 45666778899999999999999888 6778888899999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHH-HHHHHHhhCCccCcHH
Q 003918 547 ATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARE-LFENAVETAPADAVKP 625 (786)
Q Consensus 547 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~-~~~~al~~~p~~~~~~ 625 (786)
+++.+|..+|.++...|++++|+..|++++++ +|+++.+|..++..+... |++++|.. .++++++.+|+ ++.
T Consensus 63 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~---~~~~~aa~~~~~~al~l~P~--~~~ 135 (150)
T 4ga2_A 63 RDPKAHRFLGLLYELEENTDKAVECYRRSVEL--NPTQKDLVLKIAELLCKN---DVTDGRAKYWVERAAKLFPG--SPA 135 (150)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH---CSSSSHHHHHHHHHHHHSTT--CHH
T ss_pred CCHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc---CChHHHHHHHHHHHHHhCcC--CHH
Confidence 99999999999999999999999999999998 799999998876555433 66766555 46999999998 678
Q ss_pred HHHHHHHHHHHcCC
Q 003918 626 LYLQYAKLEEDYGL 639 (786)
Q Consensus 626 ~~~~~a~~~~~~g~ 639 (786)
++...+.++...|+
T Consensus 136 ~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 136 VYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCc
Confidence 88888888877774
No 86
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.61 E-value=1.9e-14 Score=144.55 Aligned_cols=200 Identities=10% Similarity=-0.010 Sum_probs=135.5
Q ss_pred CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhh
Q 003918 421 KPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVA 500 (786)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 500 (786)
.++..++..|..+...|++++|+..|++++..+|+++. ...++..+|.++.+.|++++|+..|++++...|..
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~------ 85 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEW-AADAQFYLARAYYQNKEYLLAASEYERFIQIYQID------ 85 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTT-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcc-hHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC------
Confidence 57889999999999999999999999999999998821 12889999999999999999999999999886611
Q ss_pred ccCChhHHHHhhhcHHHHHHHHHHHHH--------cCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHH
Q 003918 501 ADGNEPVQMKLHKSLRLWTFYVDLEES--------LGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVY 572 (786)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~ 572 (786)
...+.++..++.++.. .|++++|+..|+++++..|+++.++..+..+....+..
T Consensus 86 -----------~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~------- 147 (261)
T 3qky_A 86 -----------PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKL------- 147 (261)
T ss_dssp -----------TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHH-------
T ss_pred -----------chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHH-------
Confidence 0235778888999988 99999999999999999999877663332221111100
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccC-cHHHHHHHHHHHHHc----------CCHH
Q 003918 573 ERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADA-VKPLYLQYAKLEEDY----------GLAK 641 (786)
Q Consensus 573 ~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~a~~~~~~----------g~~~ 641 (786)
...+...+..+. ..|++++|+..|+++++..|+.. ....+..+|.++... |+++
T Consensus 148 ------------~~~~~~la~~~~---~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~ 212 (261)
T 3qky_A 148 ------------ARKQYEAARLYE---RRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYR 212 (261)
T ss_dssp ------------HHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHH
T ss_pred ------------HHHHHHHHHHHH---HccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHH
Confidence 111222222222 22455555555555555555422 244555555555543 5555
Q ss_pred HHHHHHHHHHhcCCCCchh
Q 003918 642 RAMKVYDQATKAVPNHEKL 660 (786)
Q Consensus 642 ~A~~~~~~~l~~~p~~~~~ 660 (786)
+|+..|+++++..|+++..
T Consensus 213 ~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 213 RAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHHHHCCCChHH
Confidence 6666666666655555433
No 87
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.61 E-value=2e-14 Score=149.28 Aligned_cols=219 Identities=9% Similarity=0.073 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q 003918 516 RLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKF 595 (786)
Q Consensus 516 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~ 595 (786)
..|...+..+...|+++.|..+... +.. +|+-...++.+|.+.|.+++|+.++++++.. ++.+..+|..+ ..+
T Consensus 178 ~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~---~ad~l~~lv~~Yek~G~~eEai~lLe~aL~l--e~ah~~~ftel-~il 250 (449)
T 1b89_A 178 RTWKEVCFACVDGKEFRLAQMCGLH-IVV---HADELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTEL-AIL 250 (449)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHTTTT-TTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--TTCCHHHHHHH-HHH
T ss_pred hhHHHHHHHHHHcCcHHHHHHHHHH-HHh---CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCC--cHHHHHHHHHH-HHH
Confidence 4444444444445555554433332 111 2222333444555555555555555555554 34455555543 233
Q ss_pred HHHhCCCChHHHHHHHHHHHhhCC-----ccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------------CCCCc
Q 003918 596 VKRYGKTKLERARELFENAVETAP-----ADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKA------------VPNHE 658 (786)
Q Consensus 596 ~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~------------~p~~~ 658 (786)
+..+..++..+..+.|...+...| . ...+|..+..++...++++.|..++-..... .+.
T Consensus 251 ~~ky~p~k~~ehl~~~~~~ini~k~~~~~~--~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~-- 326 (449)
T 1b89_A 251 YSKFKPQKMREHLELFWSRVNIPKVLRAAE--QAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVA-- 326 (449)
T ss_dssp HHTTCHHHHHHHHHHHSTTSCHHHHHHHHH--TTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCS--
T ss_pred HHhcCHHHHHHHHHHHHHHhcCcHHHHHHH--HHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchh--
Confidence 333333334444444444443333 2 2345666666666666666665544331111 111
Q ss_pred hhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCCCHHHHHH
Q 003918 659 KLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNR 738 (786)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~ 738 (786)
...++-..+.++. +..+.+...+..++.. .-+ . -....+..+.|++.-.+.++..+... ++..+-..
T Consensus 327 n~elyYkai~fyl--~~~p~~l~~ll~~l~~-~ld--~----~r~v~~~~~~~~l~l~~~yl~~v~~~----n~~~vnea 393 (449)
T 1b89_A 327 NVELYYRAIQFYL--EFKPLLLNDLLMVLSP-RLD--H----TRAVNYFSKVKQLPLVKPYLRSVQNH----NNKSVNES 393 (449)
T ss_dssp STHHHHHHHHHHH--HHCGGGHHHHHHHHGG-GCC--H----HHHHHHHHHTTCTTTTHHHHHHHHTT----CCHHHHHH
T ss_pred HHHHHHHHHHHHH--hcCHHHHHHHHHHHHh-ccC--c----HHHHHHHHHcCCcHHHHHHHHHHHHh----hHHHHHHH
Confidence 1222222333322 3445556666666622 111 1 22345667888888888888555432 35778888
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 003918 739 WHEFEVNHGNEDTFREMLRI 758 (786)
Q Consensus 739 ~~~~~~~~G~~~~a~~~~~~ 758 (786)
+.+++...+|++.-+..+..
T Consensus 394 ln~l~ieeed~~~lr~si~~ 413 (449)
T 1b89_A 394 LNNLFITEEDYQALRTSIDA 413 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHH
Confidence 88888888888888777643
No 88
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.61 E-value=6.1e-16 Score=160.70 Aligned_cols=282 Identities=12% Similarity=0.009 Sum_probs=129.0
Q ss_pred CCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccC
Q 003918 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKN 476 (786)
Q Consensus 397 ~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~ 476 (786)
|+.++|.+++++. + .+.+|..+|..+.+.|++++|++.|.++ .++ ..|...+......|+
T Consensus 17 ~~ld~A~~fae~~----~-------~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~----~~y~~V~~~ae~~g~ 76 (449)
T 1b89_A 17 GNLDRAYEFAERC----N-------EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDP----SSYMEVVQAANTSGN 76 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhC----C-------ChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCH----HHHHHHHHHHHhCCC
Confidence 5677888888874 1 2459999999999999999999999774 233 566777777778899
Q ss_pred HHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHH
Q 003918 477 FKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYA 556 (786)
Q Consensus 477 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 556 (786)
+++|+.+++.+.+..+ ++.+...++.++.++|++.++.+.|+. | +...|..+|
T Consensus 77 ~EeAi~yl~~ark~~~---------------------~~~i~~~Li~~Y~Klg~l~e~e~f~~~-----p-n~~a~~~IG 129 (449)
T 1b89_A 77 WEELVKYLQMARKKAR---------------------ESYVETELIFALAKTNRLAELEEFING-----P-NNAHIQQVG 129 (449)
T ss_dssp -----------------------------------------------------CHHHHTTTTTC-----C----------
T ss_pred HHHHHHHHHHHHHhCc---------------------cchhHHHHHHHHHHhCCHHHHHHHHcC-----C-cHHHHHHHH
Confidence 9999998888877544 355666777788888888888877752 4 345888899
Q ss_pred HHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHH
Q 003918 557 LLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEED 636 (786)
Q Consensus 557 ~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~ 636 (786)
..+...|.+++|...|.++ + .|..++..+. ..|++++|.+.|+++ + ++.+|...+.....
T Consensus 130 d~~~~~g~yeeA~~~Y~~a------~----n~~~LA~~L~---~Lg~yq~AVea~~KA-----~--~~~~Wk~v~~aCv~ 189 (449)
T 1b89_A 130 DRCYDEKMYDAAKLLYNNV------S----NFGRLASTLV---HLGEYQAAVDGARKA-----N--STRTWKEVCFACVD 189 (449)
T ss_dssp -------CTTTHHHHHHHT------T----CHHHHHHHHH---TTTCHHHHHHHHHHH-----T--CHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHh------h----hHHHHHHHHH---HhccHHHHHHHHHHc-----C--CchhHHHHHHHHHH
Confidence 9999999999999988866 1 2555554444 558899999999988 2 46788888888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH--cCChH
Q 003918 637 YGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKS--LGEID 714 (786)
Q Consensus 637 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~--~g~~~ 714 (786)
.|+++.|...... +..+|++ ....+..+.+.|.+++|+.++++++.. .+. ...+|..++.++.+ .|+..
T Consensus 190 ~~ef~lA~~~~l~-L~~~ad~-----l~~lv~~Yek~G~~eEai~lLe~aL~l-e~a--h~~~ftel~il~~ky~p~k~~ 260 (449)
T 1b89_A 190 GKEFRLAQMCGLH-IVVHADE-----LEELINYYQDRGYFEELITMLEAALGL-ERA--HMGMFTELAILYSKFKPQKMR 260 (449)
T ss_dssp TTCHHHHHHTTTT-TTTCHHH-----HHHHHHHHHHTTCHHHHHHHHHHHTTS-TTC--CHHHHHHHHHHHHTTCHHHHH
T ss_pred cCcHHHHHHHHHH-HHhCHhh-----HHHHHHHHHHCCCHHHHHHHHHHHhCC-cHH--HHHHHHHHHHHHHhcCHHHHH
Confidence 8999998666654 3344432 223555667888999999999999887 655 45678777777664 57788
Q ss_pred HHHHHHHHHHccCCC-----CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003918 715 RARGIYVFASQFADP-----RSDTEFWNRWHEFEVNHGNEDTFREML 756 (786)
Q Consensus 715 ~A~~~~~~al~~~~p-----~~~~~~~~~~~~~~~~~G~~~~a~~~~ 756 (786)
+..+.|.+.+.+ +| . +..+|..++-++.+.|++++|..+.
T Consensus 261 ehl~~~~~~ini-~k~~~~~~-~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 261 EHLELFWSRVNI-PKVLRAAE-QAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHHHSTTSCH-HHHHHHHH-TTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcC-cHHHHHHH-HHHHHHHHHHHHHhhchHHHHHHHH
Confidence 888888888776 44 3 4678999999999999999887776
No 89
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.61 E-value=2e-15 Score=137.05 Aligned_cols=138 Identities=13% Similarity=0.145 Sum_probs=102.6
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHH
Q 003918 429 FAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQ 508 (786)
Q Consensus 429 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 508 (786)
+|.++...|++++|+..|++++..+|+++ ..++.+|.++.+.|++++|+..|++++++.|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~----~~~~~la~~y~~~~~~~~A~~~~~~al~~~p---------------- 62 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKS----IKGFYFAKLYYEAKEYDLAKKYICTYINVQE---------------- 62 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHH----TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------------
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----------------
Confidence 45566677777888888888877777665 6677778888888888888888888887777
Q ss_pred HHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHH-HHHHHhhcCCCChHHH
Q 003918 509 MKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRV-YERGVKIFKYPHVKDI 587 (786)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~-~~~al~~~~~p~~~~~ 587 (786)
+++.+|..+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|... +++++++ +|.++.+
T Consensus 63 ----~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~ 136 (150)
T 4ga2_A 63 ----RDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAV 136 (150)
T ss_dssp ----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHH
T ss_pred ----CCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHH
Confidence 67777888888888888888888888888888888888888888888888877766554 4778876 6777777
Q ss_pred HHHHH
Q 003918 588 WVTYL 592 (786)
Q Consensus 588 ~~~~~ 592 (786)
|....
T Consensus 137 ~~l~~ 141 (150)
T 4ga2_A 137 YKLKE 141 (150)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.60 E-value=2.9e-14 Score=145.56 Aligned_cols=210 Identities=10% Similarity=0.035 Sum_probs=126.6
Q ss_pred HHHHcCChHHHHHHHHHHHhhccC------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCCh----HHHHHHHHH
Q 003918 524 LEESLGNLESTRAVYERILDLRIA------TPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHV----KDIWVTYLS 593 (786)
Q Consensus 524 ~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~----~~~~~~~~~ 593 (786)
++...|++++|...|++++++.+. ...++.++|.++...|++++|+..|++++.+.+...+ ...+...+.
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344566677777777777665321 1346666777777777777777777777766311111 223444332
Q ss_pred HHHHHhCC-CChHHHHHHHHHHHhhCCccCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhh-----HH
Q 003918 594 KFVKRYGK-TKLERARELFENAVETAPADAV----KPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLG-----MY 663 (786)
Q Consensus 594 ~~~~~~~~-~~~~~A~~~~~~al~~~p~~~~----~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~-----~~ 663 (786)
.+. .. |++++|+..|+++++..|...+ ..++..+|.++...|++++|+..|+++++..|.++... .+
T Consensus 126 ~~~---~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 202 (292)
T 1qqe_A 126 ILE---NDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (292)
T ss_dssp HHH---HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHH---HhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 222 22 6777777777777777664211 34677788888888888888888888888877654421 23
Q ss_pred HHHHHHHHHhcChhHHHHHHHHHHHhcCCChhH---HHHHHHHHHHHH--HcCChHHHHHHHHHHHccCCCCCCHHHHHH
Q 003918 664 EIYIARAAEIFGVPKTREIYEQAIESGLPDKDV---KAMCLKYAELEK--SLGEIDRARGIYVFASQFADPRSDTEFWNR 738 (786)
Q Consensus 664 ~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~---~~~~~~~~~~~~--~~g~~~~A~~~~~~al~~~~p~~~~~~~~~ 738 (786)
...+..+...|++++|+..|++++.. .|.... ...+..++..+. ..+++++|...|++++.. +|. ...++..
T Consensus 203 ~~lg~~~~~~g~~~~A~~~~~~al~l-~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l-~~~-~~~~~~~ 279 (292)
T 1qqe_A 203 LKKGLCQLAATDAVAAARTLQEGQSE-DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL-DKW-KITILNK 279 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC-CHH-HHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc-HHH-HHHHHHH
Confidence 33444455678888888888888877 665321 113344455444 456788888888888775 555 2344443
Q ss_pred H
Q 003918 739 W 739 (786)
Q Consensus 739 ~ 739 (786)
.
T Consensus 280 ~ 280 (292)
T 1qqe_A 280 I 280 (292)
T ss_dssp H
T ss_pred H
Confidence 3
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.59 E-value=8.7e-14 Score=139.62 Aligned_cols=217 Identities=14% Similarity=0.119 Sum_probs=161.9
Q ss_pred hccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhc---HHHHHHHHHHHHH
Q 003918 451 QVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKS---LRLWTFYVDLEES 527 (786)
Q Consensus 451 ~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 527 (786)
..+|.++ ..++..|..+.+.|++++|+..|++++...| .+ +.++..+|.++..
T Consensus 9 ~~~~~~~----~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p--------------------~~~~~~~a~~~lg~~~~~ 64 (261)
T 3qky_A 9 RLRHSSP----QEAFERAMEFYNQGKYDRAIEYFKAVFTYGR--------------------THEWAADAQFYLARAYYQ 64 (261)
T ss_dssp --CCSSH----HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS--------------------CSTTHHHHHHHHHHHHHH
T ss_pred CCCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC--------------------CCcchHHHHHHHHHHHHH
Confidence 3456665 7888888888999999999999999998877 45 7888888999999
Q ss_pred cCChHHHHHHHHHHHhhccCC---HHHHHHHHHHHHH--------cccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Q 003918 528 LGNLESTRAVYERILDLRIAT---PQIIINYALLLEE--------HKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFV 596 (786)
Q Consensus 528 ~g~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~--------~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~ 596 (786)
.|++++|+..|+++++..|++ +.+++.+|.++.. .|++++|+..|++++.. +|++..++..... +
T Consensus 65 ~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~-~- 140 (261)
T 3qky_A 65 NKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQK-I- 140 (261)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHH-H-
T ss_pred hCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHH-H-
Confidence 999999999999999987754 5678888999988 89999999999999987 5766544433211 1
Q ss_pred HHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchh-hHHHHHHHHHHHh--
Q 003918 597 KRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKL-GMYEIYIARAAEI-- 673 (786)
Q Consensus 597 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~~~~~~~~~~~~-- 673 (786)
..... . ....++.+|.++...|++++|+..|+++++..|+++.. ..+...+..+...
T Consensus 141 --------~~~~~----------~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~ 200 (261)
T 3qky_A 141 --------RELRA----------K--LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAE 200 (261)
T ss_dssp --------HHHHH----------H--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred --------HHHHH----------H--HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcc
Confidence 00111 1 12347889999999999999999999999999986432 2233333333333
Q ss_pred --------cChhHHHHHHHHHHHhcCCChhH-HHHHHHHHHHHHHcCChHHH
Q 003918 674 --------FGVPKTREIYEQAIESGLPDKDV-KAMCLKYAELEKSLGEIDRA 716 (786)
Q Consensus 674 --------~~~~~A~~~~~~al~~~~p~~~~-~~~~~~~~~~~~~~g~~~~A 716 (786)
|++++|+..|+++++. .|++.. ..+...++.++...|+++.+
T Consensus 201 ~~~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 201 QSVRARQPERYRRAVELYERLLQI-FPDSPLLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp TSCGGGHHHHHHHHHHHHHHHHHH-CTTCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cchhhcccchHHHHHHHHHHHHHH-CCCChHHHHHHHHHHHHHHHHHHhhhh
Confidence 8999999999999999 887543 34555567777777766554
No 92
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.59 E-value=2.5e-14 Score=146.03 Aligned_cols=257 Identities=11% Similarity=0.076 Sum_probs=174.6
Q ss_pred hHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHH--cCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHH
Q 003918 401 KQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYET--YKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFK 478 (786)
Q Consensus 401 ~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~ 478 (786)
+|.+++.++-+.+.+ +...| . ++.. .+++++|...|+++ +.++...|+++
T Consensus 3 ~a~~~~~~a~k~~~~------~~~~~-~---~~~~~~~~~~~~A~~~~~~a------------------~~~~~~~g~~~ 54 (292)
T 1qqe_A 3 DPVELLKRAEKKGVP------SSGFM-K---LFSGSDSYKFEEAADLCVQA------------------ATIYRLRKELN 54 (292)
T ss_dssp CHHHHHHHHHHHSSC------CCTHH-H---HHSCCSHHHHHHHHHHHHHH------------------HHHHHHTTCTH
T ss_pred cHHHHHHHHHHHhCc------CCCcc-h---hcCCCCCccHHHHHHHHHHH------------------HHHHHHcCCHH
Confidence 466777777765443 11222 1 2221 22488888888877 23456789999
Q ss_pred HHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCC------HHHH
Q 003918 479 GALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIAT------PQII 552 (786)
Q Consensus 479 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~ 552 (786)
+|+..|.+++.+.+.. + ........|..++.++...|++++|+..|++++++.|.. ..++
T Consensus 55 ~A~~~~~~al~~~~~~-----~---------~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~ 120 (292)
T 1qqe_A 55 LAGDSFLKAADYQKKA-----G---------NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFK 120 (292)
T ss_dssp HHHHHHHHHHHHHHHT-----T---------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-----C---------CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999998764300 0 000235788889999999999999999999999987653 4578
Q ss_pred HHHHHHHHHc-ccHHHHHHHHHHHHhhcCCCCh----HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcH---
Q 003918 553 INYALLLEEH-KYFEDAFRVYERGVKIFKYPHV----KDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVK--- 624 (786)
Q Consensus 553 ~~~~~~~~~~-g~~~~A~~~~~~al~~~~~p~~----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~--- 624 (786)
.++|.++... |++++|+..|++++++.+...+ ..++..++..+. ..|++++|+..|+++++..|+....
T Consensus 121 ~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~ 197 (292)
T 1qqe_A 121 FELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKA---LDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (292)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH---HhCCHHHHHHHHHHHHHHHhcCCcccHH
Confidence 8999999996 9999999999999998421111 345555554443 4588999999999999998874321
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhh---HHHHHHHHHH--HhcChhHHHHHHHHHHHhcCCChhHH
Q 003918 625 --PLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLG---MYEIYIARAA--EIFGVPKTREIYEQAIESGLPDKDVK 697 (786)
Q Consensus 625 --~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~---~~~~~~~~~~--~~~~~~~A~~~~~~al~~~~p~~~~~ 697 (786)
..+..+|.++...|++++|+..|+++++..|...... .....+..+. ..+++.+|...|++++.. .|. ..
T Consensus 198 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l-~~~--~~ 274 (292)
T 1qqe_A 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL-DKW--KI 274 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC-CHH--HH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc-HHH--HH
Confidence 2678899999999999999999999999999754432 2222222222 246688899999988877 665 34
Q ss_pred HHHHHHHH
Q 003918 698 AMCLKYAE 705 (786)
Q Consensus 698 ~~~~~~~~ 705 (786)
.+++.+-.
T Consensus 275 ~~~~~~k~ 282 (292)
T 1qqe_A 275 TILNKIKE 282 (292)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45554433
No 93
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.59 E-value=4.9e-13 Score=141.97 Aligned_cols=319 Identities=9% Similarity=0.003 Sum_probs=223.2
Q ss_pred hcCCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChh--hHHHHHHHHHHHHH
Q 003918 395 FEGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVD--HLASIWCEWAEMEL 472 (786)
Q Consensus 395 ~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~~~~~~a~~~~ 472 (786)
..|++++|...+++++...++ ........++..+|..+...|++++|+..+++++...+.... .....+..++.++.
T Consensus 26 ~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 104 (373)
T 1hz4_A 26 NDGNPDEAERLAKLALEELPP-GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF 104 (373)
T ss_dssp HTTCHHHHHHHHHHHHHTCCT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHcCCC-CchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 359999999999999964432 100011236778889999999999999999999987654432 12344677888999
Q ss_pred hccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccC-----
Q 003918 473 RHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIA----- 547 (786)
Q Consensus 473 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~----- 547 (786)
..|++++|...+++++...+.. +.. ........+..++.++...|++++|...+++++...+.
T Consensus 105 ~~G~~~~A~~~~~~al~~~~~~-----~~~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 172 (373)
T 1hz4_A 105 AQGFLQTAWETQEKAFQLINEQ-----HLE-------QLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ 172 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHT-----TCT-------TSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred HCCCHHHHHHHHHHHHHHHHHh-----ccc-------cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH
Confidence 9999999999999998754200 000 00023456677889999999999999999999998664
Q ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHH--HHHHHHhCCCChHHHHHHHHHHHhhCCccC--c
Q 003918 548 TPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYL--SKFVKRYGKTKLERARELFENAVETAPADA--V 623 (786)
Q Consensus 548 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~--~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~ 623 (786)
...++..++.++...|++++|...+++++...+.+..+..|.... .........|++++|...+++++...|... .
T Consensus 173 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 252 (373)
T 1hz4_A 173 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL 252 (373)
T ss_dssp GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGG
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhh
Confidence 246788999999999999999999999998743333322333221 111111245899999999999998766421 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc----hhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChhHHHH
Q 003918 624 KPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHE----KLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAM 699 (786)
Q Consensus 624 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~ 699 (786)
...+..++.++...|++++|...+++++...+... ...........+...|+.++|+..+++++.. .+..
T Consensus 253 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~-~~~~----- 326 (373)
T 1hz4_A 253 QGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL-ANRT----- 326 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HHHH-----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-hccc-----
Confidence 33567889999999999999999999987655321 1123333344456789999999999999987 3321
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHccCCCCCCHHHHHHH
Q 003918 700 CLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRW 739 (786)
Q Consensus 700 ~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~ 739 (786)
.+..++...| +....++.+.+.. .|- ...|..-
T Consensus 327 --g~~~~~~~~g--~~~~~ll~~~~~~-~~~--~~~~~~~ 359 (373)
T 1hz4_A 327 --GFISHFVIEG--EAMAQQLRQLIQL-NTL--PELEQHR 359 (373)
T ss_dssp --CCCHHHHTTH--HHHHHHHHHHHHT-TCS--CHHHHHH
T ss_pred --cHHHHHHHcc--HHHHHHHHHHHhC-CCC--chHHHHH
Confidence 1223333444 6677788888876 342 3455543
No 94
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.59 E-value=1.1e-14 Score=166.92 Aligned_cols=188 Identities=13% Similarity=-0.030 Sum_probs=167.8
Q ss_pred ccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHH--------hccCCChhhHHHHHHHHHHHHHhccCHHHHHHH
Q 003918 412 TVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAV--------QVNYKTVDHLASIWCEWAEMELRHKNFKGALEL 483 (786)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al--------~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~ 483 (786)
.++| .++..+...+ ...|++++|+..|++++ ..+|++. .+|..++..+...|++++|+..
T Consensus 388 ~~~p-----~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~----~~~~~~a~~~~~~g~~~~A~~~ 455 (681)
T 2pzi_A 388 LVDP-----TDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESV----ELPLMEVRALLDLGDVAKATRK 455 (681)
T ss_dssp CCCT-----TSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCS----HHHHHHHHHHHHHTCHHHHHHH
T ss_pred cCCC-----CCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccch----hHHHHHHHHHHhcCCHHHHHHH
Confidence 4666 4455666565 78999999999999999 9999998 8999999999999999999999
Q ss_pred HHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcc
Q 003918 484 MRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHK 563 (786)
Q Consensus 484 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 563 (786)
|+++++..| ++..+|..+|.++...|++++|+..|+++++.+|+++.+|.++|.++...|
T Consensus 456 ~~~al~~~p--------------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g 515 (681)
T 2pzi_A 456 LDDLAERVG--------------------WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAG 515 (681)
T ss_dssp HHHHHHHHC--------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHT
T ss_pred HHHHhccCc--------------------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Confidence 999999999 789999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCC
Q 003918 564 YFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGL 639 (786)
Q Consensus 564 ~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~ 639 (786)
++++ +..|+++++. +|.+..+|..++..+. ..|++++|+..|+++++.+|+ +..++.+++.++...|.
T Consensus 516 ~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~---~~g~~~~A~~~~~~al~l~P~--~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 516 NTDE-HKFYQTVWST--NDGVISAAFGLARARS---AEGDRVGAVRTLDEVPPTSRH--FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp CCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHH---HTTCHHHHHHHHHTSCTTSTT--HHHHHHHHHHHTC----
T ss_pred ChHH-HHHHHHHHHh--CCchHHHHHHHHHHHH---HcCCHHHHHHHHHhhcccCcc--cHHHHHHHHHHHHccCC
Confidence 9999 9999999998 7999999998765554 458999999999999999999 78999999999877665
No 95
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.59 E-value=1.8e-14 Score=146.01 Aligned_cols=233 Identities=15% Similarity=0.134 Sum_probs=173.7
Q ss_pred CCchhHHHHHHHHHhccCCC--ccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhcc-----CCChhhHHHHHHHHHH
Q 003918 397 GNPTKQILTYTEAVRTVDPM--KAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVN-----YKTVDHLASIWCEWAE 469 (786)
Q Consensus 397 ~~~~~a~~~~~~al~~~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~a~ 469 (786)
|++++|+..|++++...... ...+..+.++..+|.++...|++++|+..|++++... ++++ ....++..++.
T Consensus 15 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~l~~ 93 (283)
T 3edt_B 15 VPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHP-AVAATLNNLAV 93 (283)
T ss_dssp SCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCH-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcch-HHHHHHHHHHH
Confidence 77888888888888532100 0012567899999999999999999999999999874 3332 33478999999
Q ss_pred HHHhccCHHHHHHHHHHHhcCC--------chHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003918 470 MELRHKNFKGALELMRRATAEP--------SVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERI 541 (786)
Q Consensus 470 ~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 541 (786)
++...|++++|+.+|++++... | ....++..++.++...|++++|...|+++
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~a 153 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHP--------------------DVAKQLNNLALLCQNQGKAEEVEYYYRRA 153 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH--------------------HHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCCh--------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999999762 3 45688899999999999999999999999
Q ss_pred Hhh--------ccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhc-------CCCChHHHHHHHHHHHHHHh----CCC
Q 003918 542 LDL--------RIATPQIIINYALLLEEHKYFEDAFRVYERGVKIF-------KYPHVKDIWVTYLSKFVKRY----GKT 602 (786)
Q Consensus 542 l~~--------~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------~~p~~~~~~~~~~~~~~~~~----~~~ 602 (786)
+.. .|....++..+|.++...|++++|+..+++++... ..|.....|..... ..... ...
T Consensus 154 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 232 (283)
T 3edt_B 154 LEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEE-REESKDKRRDSA 232 (283)
T ss_dssp HHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHH-HHHTTCCCCC--
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHH-HHhcCCchhHHH
Confidence 998 66667889999999999999999999999999862 12344445655332 22110 011
Q ss_pred ChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 003918 603 KLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKA 653 (786)
Q Consensus 603 ~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 653 (786)
.+..+...++......|. ...++..+|.++...|++++|..+|+++++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 233 PYGEYGSWYKACKVDSPT--VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp ----------CCCCCCHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCCHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 234444444444334444 5678899999999999999999999999875
No 96
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.57 E-value=2e-12 Score=131.02 Aligned_cols=247 Identities=13% Similarity=0.085 Sum_probs=176.8
Q ss_pred HcCChh-HHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccC----------HHHHHHHHHHHhcCCchHHhhhhhccC
Q 003918 435 TYKDIA-NARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKN----------FKGALELMRRATAEPSVEVRRRVAADG 503 (786)
Q Consensus 435 ~~~~~~-~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~~~~ 503 (786)
+.|+++ +|...+++++..+|++. .+|..-..+....+. +++++..++.++...|
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~y----taWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P----------- 105 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFA----TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP----------- 105 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCH----HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-----------
T ss_pred HcCCCCHHHHHHHHHHHHHCchhH----HHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC-----------
Confidence 456655 79999999999999998 999998888776654 6788889999998888
Q ss_pred ChhHHHHhhhcHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhhccCCHHHHHHHHHHHHHccc-HHHHHHHHHHHHhhcC
Q 003918 504 NEPVQMKLHKSLRLWTFYVDLEESLGN--LESTRAVYERILDLRIATPQIIINYALLLEEHKY-FEDAFRVYERGVKIFK 580 (786)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~~ 580 (786)
.+..+|...+.+....|. +++++.++.++++.+|.+..+|...+.+....|. ++++++.+.++++.
T Consensus 106 ---------Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~-- 174 (331)
T 3dss_A 106 ---------KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-- 174 (331)
T ss_dssp ---------TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--
T ss_pred ---------CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--
Confidence 788999999988888884 7899999999999999999999999999888888 58999999999997
Q ss_pred CCChHHHHHHHHHHHHHHhCC------------CChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHc-CCHHHHHHHH
Q 003918 581 YPHVKDIWVTYLSKFVKRYGK------------TKLERARELFENAVETAPADAVKPLYLQYAKLEEDY-GLAKRAMKVY 647 (786)
Q Consensus 581 ~p~~~~~~~~~~~~~~~~~~~------------~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~-g~~~~A~~~~ 647 (786)
+|.+..+|..... +...+.. +.++++.+.+.+++..+|+ +..+|..+..+.... |.
T Consensus 175 ~p~N~SAW~~R~~-ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~--d~SaW~Y~r~ll~~~~~~-------- 243 (331)
T 3dss_A 175 NFSNYSSWHYRSC-LLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN--DQSAWFYHRWLLGAGSGR-------- 243 (331)
T ss_dssp CSCCHHHHHHHHH-HHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHSSSCG--------
T ss_pred CCCCHHHHHHHHH-HHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhccCc--------
Confidence 7999999987543 3333311 2367888888888888888 677887665555443 20
Q ss_pred HHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHH---HcCChHHHHHHHHHHH
Q 003918 648 DQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEK---SLGEIDRARGIYVFAS 724 (786)
Q Consensus 648 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~---~~g~~~~A~~~~~~al 724 (786)
+... . ...+-++++++.+.++++. .|++ .-.+..++.+.. ..|..++++.++.+.+
T Consensus 244 ----------~~~~--~------~~~~~l~~el~~~~elle~-~pd~--~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~ 302 (331)
T 3dss_A 244 ----------CELS--V------EKSTVLQSELESCKELQEL-EPEN--KWCLLTIILLMRALDPLLYEKETLQYFSTLK 302 (331)
T ss_dssp ----------GGCC--H------HHHHHHHHHHHHHHHHHHH-CTTC--HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHH
T ss_pred ----------cccc--h------HHHHHHHHHHHHHHHHHhh-Cccc--chHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 0000 0 1123455666666666666 6653 222222222221 2456667777777777
Q ss_pred ccCCCCCCHHHHHHHHH
Q 003918 725 QFADPRSDTEFWNRWHE 741 (786)
Q Consensus 725 ~~~~p~~~~~~~~~~~~ 741 (786)
+. ||. ....|..+..
T Consensus 303 ~~-Dp~-r~~~y~d~~~ 317 (331)
T 3dss_A 303 AV-DPM-RAAYLDDLRS 317 (331)
T ss_dssp HH-CGG-GHHHHHHHHH
T ss_pred Hh-Ccc-hhhHHHHHHH
Confidence 76 666 4666666544
No 97
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.57 E-value=4.7e-14 Score=143.00 Aligned_cols=206 Identities=15% Similarity=0.126 Sum_probs=152.5
Q ss_pred hcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhc--------cCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhc-----
Q 003918 513 KSLRLWTFYVDLEESLGNLESTRAVYERILDLR--------IATPQIIINYALLLEEHKYFEDAFRVYERGVKIF----- 579 (786)
Q Consensus 513 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~----- 579 (786)
....++..++.++...|++++|+..|+++++.. |..+.++..+|.++...|++++|+..|++++...
T Consensus 41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 120 (283)
T 3edt_B 41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 120 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcC
Confidence 467889999999999999999999999999874 5556789999999999999999999999999873
Q ss_pred -CCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhh--------CCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003918 580 -KYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVET--------APADAVKPLYLQYAKLEEDYGLAKRAMKVYDQA 650 (786)
Q Consensus 580 -~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~ 650 (786)
.+|....++..++..+. ..|++++|..+|+++++. .|. ...++..+|.++...|++++|..+++++
T Consensus 121 ~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~ 195 (283)
T 3edt_B 121 KFHPDVAKQLNNLALLCQ---NQGKAEEVEYYYRRALEIYATRLGPDDPN--VAKTKNNLASCYLKQGKYQDAETLYKEI 195 (283)
T ss_dssp TTCHHHHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHHHHHHSCTTCHH--HHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 12555666666554443 568999999999999998 555 5678999999999999999999999999
Q ss_pred HhcCCC-------CchhhHHHHHHHHHHHhcC------hhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHH
Q 003918 651 TKAVPN-------HEKLGMYEIYIARAAEIFG------VPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRAR 717 (786)
Q Consensus 651 l~~~p~-------~~~~~~~~~~~~~~~~~~~------~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~ 717 (786)
++..|. ......+..........+. +..+...++..... .| ....++..+|.++...|++++|.
T Consensus 196 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~la~~~~~~g~~~~A~ 272 (283)
T 3edt_B 196 LTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SP--TVNTTLRSLGALYRRQGKLEAAH 272 (283)
T ss_dssp HHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CH--HHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CH--HHHHHHHHHHHHHHHcCCHHHHH
Confidence 986332 1112233332222222222 22333333332212 23 35678899999999999999999
Q ss_pred HHHHHHHcc
Q 003918 718 GIYVFASQF 726 (786)
Q Consensus 718 ~~~~~al~~ 726 (786)
.+|+++++.
T Consensus 273 ~~~~~al~~ 281 (283)
T 3edt_B 273 TLEDCASRN 281 (283)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHh
Confidence 999999875
No 98
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.54 E-value=1.8e-12 Score=131.28 Aligned_cols=240 Identities=9% Similarity=-0.002 Sum_probs=170.5
Q ss_pred hccCH-HHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCC----------hHHHHHHHHHH
Q 003918 473 RHKNF-KGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGN----------LESTRAVYERI 541 (786)
Q Consensus 473 ~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----------~~~A~~~~~~a 541 (786)
+.|.+ ++|+.++.+++..+| .+..+|.....+....|. +++++.+++.+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP--------------------~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~ 100 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANP--------------------DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESC 100 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCT--------------------TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCc--------------------hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHH
Confidence 34554 589999999999999 788999999888876665 68899999999
Q ss_pred HhhccCCHHHHHHHHHHHHHccc--HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHhhC
Q 003918 542 LDLRIATPQIIINYALLLEEHKY--FEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTK-LERARELFENAVETA 618 (786)
Q Consensus 542 l~~~p~~~~~~~~~~~~~~~~g~--~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~ 618 (786)
+..+|.+..+|...+.++...|. +++++.++.++++. +|.+..+|..-. .+...+ |. ++++.+.++++++.+
T Consensus 101 L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~-~vl~~l--~~~~~eel~~~~~~I~~~ 175 (331)
T 3dss_A 101 LRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--DERNFHCWDYRR-FVAAQA--AVAPAEELAFTDSLITRN 175 (331)
T ss_dssp HHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHH-HHHHHT--TCCHHHHHHHHHHHHHHC
T ss_pred HHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--CCCCHHHHHHHH-HHHHHh--CcCHHHHHHHHHHHHHHC
Confidence 99999999999999999999884 89999999999997 899999998644 444443 44 589999999999999
Q ss_pred CccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChhHHH
Q 003918 619 PADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKA 698 (786)
Q Consensus 619 p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~ 698 (786)
|. +..+|...+.+....+....+ +.... ...+.++++.+++.+++.. .|++.+
T Consensus 176 p~--N~SAW~~R~~ll~~l~~~~~~-----------~~~~~-----------~~~~~~~eEle~~~~ai~~-~P~d~S-- 228 (331)
T 3dss_A 176 FS--NYSSWHYRSCLLPQLHPQPDS-----------GPQGR-----------LPENVLLKELELVQNAFFT-DPNDQS-- 228 (331)
T ss_dssp SC--CHHHHHHHHHHHHHHSCCC-----------------C-----------CCHHHHHHHHHHHHHHHHH-STTCHH--
T ss_pred CC--CHHHHHHHHHHHHHhhhcccc-----------ccccc-----------cchHHHHHHHHHHHHHHHh-CCCCHH--
Confidence 99 678999988887665221000 00000 0012345556666666666 555332
Q ss_pred HHHHHHHHHHHc-----------CChHHHHHHHHHHHccCCCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHh
Q 003918 699 MCLKYAELEKSL-----------GEIDRARGIYVFASQFADPRSDTEFWNRWHEFEV---NHGNEDTFREMLRIKRSVSA 764 (786)
Q Consensus 699 ~~~~~~~~~~~~-----------g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~---~~G~~~~a~~~~~~~~~~~~ 764 (786)
+|..+..++... +.++++++.++.+++. .|++ .=.+...+.+.. ..|..++....+..-..+++
T Consensus 229 aW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~-~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 229 AWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL-EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp HHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH-CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh-Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCc
Confidence 554443333332 4589999999999998 7984 322333333322 35788888888866666655
Q ss_pred hh
Q 003918 765 SY 766 (786)
Q Consensus 765 ~~ 766 (786)
..
T Consensus 307 ~r 308 (331)
T 3dss_A 307 MR 308 (331)
T ss_dssp GG
T ss_pred ch
Confidence 43
No 99
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.54 E-value=7.4e-13 Score=134.65 Aligned_cols=234 Identities=13% Similarity=0.131 Sum_probs=185.2
Q ss_pred CCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcC-ChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhc-
Q 003918 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYK-DIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRH- 474 (786)
Q Consensus 397 ~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~- 474 (786)
+..++|+..++++| .++| .+..+|...+.+....| .++++...+++++..+|.+. .+|...+.+....
T Consensus 68 e~se~AL~lt~~~L-~~nP-----~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny----~aW~hR~wlL~~l~ 137 (349)
T 3q7a_A 68 EKSERALELTEIIV-RMNP-----AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSY----QVWHHRLLLLDRIS 137 (349)
T ss_dssp CCSHHHHHHHHHHH-HHCT-----TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCH----HHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHH-HhCc-----hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHhc
Confidence 34568999999999 5777 78999999999999999 59999999999999999998 9999999988877
Q ss_pred c-CHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChH--------HHHHHHHHHHhhc
Q 003918 475 K-NFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLE--------STRAVYERILDLR 545 (786)
Q Consensus 475 g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--------~A~~~~~~al~~~ 545 (786)
+ ++++++.++.+++...| .+..+|...+.+....|.++ ++++.++++++.+
T Consensus 138 ~~~~~~EL~~~~k~L~~dp--------------------kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d 197 (349)
T 3q7a_A 138 PQDPVSEIEYIHGSLLPDP--------------------KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD 197 (349)
T ss_dssp CSCCHHHHHHHHHHTSSCT--------------------TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC
T ss_pred CCChHHHHHHHHHHHHhCC--------------------CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC
Confidence 7 89999999999999999 88999999998888888777 9999999999999
Q ss_pred cCCHHHHHHHHHHHHHccc-------HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCC---------------
Q 003918 546 IATPQIIINYALLLEEHKY-------FEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTK--------------- 603 (786)
Q Consensus 546 p~~~~~~~~~~~~~~~~g~-------~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~--------------- 603 (786)
|.+..+|...+.+....|. ++++++.+++++.. +|.+..+|.. ...++...+.+.
T Consensus 198 p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Y-lr~Ll~~~~~~~~~~~~~~~~~~~~~~ 274 (349)
T 3q7a_A 198 GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--IPHNVSAWNY-LRGFLKHFSLPLVPILPAILPYTASKL 274 (349)
T ss_dssp TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHH-HHHHHHHTTCCSGGGHHHHGGGTC---
T ss_pred CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHH-HHHHHHhcCCCcccccccccccccccc
Confidence 9999999999999988886 78999999999997 7999999985 445555433331
Q ss_pred ---hHHHHHHHHHHHhhC----CccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcCCCCchhhHH
Q 003918 604 ---LERARELFENAVETA----PADAVKPLYLQYAKLEEDYGLAKRAMKVYDQAT-KAVPNHEKLGMY 663 (786)
Q Consensus 604 ---~~~A~~~~~~al~~~----p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l-~~~p~~~~~~~~ 663 (786)
.....+.....+... +.-.+..++..+++++...|+.++|.++++... +.+|-...+|.+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~ 342 (349)
T 3q7a_A 275 NPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEF 342 (349)
T ss_dssp -----------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred cccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHH
Confidence 122222222222221 001266778888888888888888888888876 445554444433
No 100
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.54 E-value=9.7e-13 Score=133.79 Aligned_cols=240 Identities=11% Similarity=0.058 Sum_probs=149.5
Q ss_pred hccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhhccCCHHH
Q 003918 473 RHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLG-NLESTRAVYERILDLRIATPQI 551 (786)
Q Consensus 473 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~ 551 (786)
..+..++|++++++++..+| .+..+|...+.+....| .+++++..+++++..+|.+..+
T Consensus 66 ~~e~se~AL~lt~~~L~~nP--------------------~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~a 125 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNP--------------------AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQV 125 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCT--------------------TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHH
T ss_pred hCCCCHHHHHHHHHHHHhCc--------------------hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHH
Confidence 33444566677777777766 56667777666666666 4677777777777777777777
Q ss_pred HHHHHHHHHHc-c-cHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChH--------HHHHHHHHHHhhCCcc
Q 003918 552 IINYALLLEEH-K-YFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLE--------RARELFENAVETAPAD 621 (786)
Q Consensus 552 ~~~~~~~~~~~-g-~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~--------~A~~~~~~al~~~p~~ 621 (786)
|...+.+.... + +++++++.+++++.. +|.+..+|.... .+...+ +.++ ++.+.++++++.+|.
T Consensus 126 W~hR~wlL~~l~~~~~~~EL~~~~k~L~~--dpkNy~AW~~R~-wvl~~l--~~~~~~~~~~~~eELe~~~k~I~~dp~- 199 (349)
T 3q7a_A 126 WHHRLLLLDRISPQDPVSEIEYIHGSLLP--DPKNYHTWAYLH-WLYSHF--STLGRISEAQWGSELDWCNEMLRVDGR- 199 (349)
T ss_dssp HHHHHHHHHHHCCSCCHHHHHHHHHHTSS--CTTCHHHHHHHH-HHHHHH--HHTTCCCHHHHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHh--CCCCHHHHHHHH-HHHHHh--ccccccchhhHHHHHHHHHHHHHhCCC-
Confidence 77777666665 5 666777777777765 577777776433 232222 2233 677777777777776
Q ss_pred CcHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChh-----------------
Q 003918 622 AVKPLYLQYAKLEEDYGL-------AKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVP----------------- 677 (786)
Q Consensus 622 ~~~~~~~~~a~~~~~~g~-------~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~----------------- 677 (786)
+..+|...+.+....|. ++++++.+.+++..+|.+...+.+...+.. +.|...
T Consensus 200 -N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~--~~~~~~~~~~~~~~~~~~~~~~~ 276 (349)
T 3q7a_A 200 -NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLK--HFSLPLVPILPAILPYTASKLNP 276 (349)
T ss_dssp -CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH--HTTCCSGGGHHHHGGGTC-----
T ss_pred -CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--hcCCCcccccccccccccccccc
Confidence 45667776666666554 567777777777777766666655444432 222110
Q ss_pred HHHHHHHHHHHh-c-C----CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCCCHHHHHHHHHH
Q 003918 678 KTREIYEQAIES-G-L----PDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEF 742 (786)
Q Consensus 678 ~A~~~~~~al~~-~-~----p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~ 742 (786)
.--.+-+.++.. + . +...++.++.-++.++...|+.++|.++|+...+..||- ....|......
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpi-r~~yw~~~~~~ 346 (349)
T 3q7a_A 277 DIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQM-RAGYWEFRRRE 346 (349)
T ss_dssp ---------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGG-GHHHHHHHHHH
T ss_pred cchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChH-HHHHHHHHHHh
Confidence 001222222222 0 1 012256788888999999999999999999988666776 68899887653
No 101
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.53 E-value=2.1e-13 Score=127.56 Aligned_cols=167 Identities=13% Similarity=0.007 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q 003918 516 RLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKF 595 (786)
Q Consensus 516 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~ 595 (786)
..+...+..+...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..+++++.. +| ++..+.......
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p-~~~~~~~~~~~~ 83 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQ-DNSYKSLIAKLE 83 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cC-ChHHHHHHHHHH
Confidence 456677888899999999999999999999999999999999999999999999999999997 57 665544322221
Q ss_pred HHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcC
Q 003918 596 VKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFG 675 (786)
Q Consensus 596 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 675 (786)
... .+....|+..|+++++..|+ +..++..+|.++...|++++|+..|+++++..|+......+..++..+...|+
T Consensus 84 ~~~--~~~~~~a~~~~~~al~~~P~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 159 (176)
T 2r5s_A 84 LHQ--QAAESPELKRLEQELAANPD--NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQ 159 (176)
T ss_dssp HHH--HHTSCHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCS
T ss_pred HHh--hcccchHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCC
Confidence 111 12234589999999999999 78999999999999999999999999999999976554555566666678899
Q ss_pred hhHHHHHHHHHHHh
Q 003918 676 VPKTREIYEQAIES 689 (786)
Q Consensus 676 ~~~A~~~~~~al~~ 689 (786)
.++|...|++++..
T Consensus 160 ~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 160 GNAIASKYRRQLYS 173 (176)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHH
Confidence 99999999998754
No 102
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.51 E-value=7.2e-13 Score=134.68 Aligned_cols=168 Identities=9% Similarity=-0.030 Sum_probs=144.0
Q ss_pred CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhh
Q 003918 421 KPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVA 500 (786)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 500 (786)
.....+..+|..+...|++++|+..|++++..+|+++ .++..++.++.+.|++++|+..|++++...|
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~----~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p-------- 182 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNG----EIGLLLAETLIALNRSEDAEAVLXTIPLQDQ-------- 182 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCH----HHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC--------
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcch----hHHHHHHHHHHHCCCHHHHHHHHHhCchhhc--------
Confidence 5778899999999999999999999999999999998 8999999999999999999999999998888
Q ss_pred ccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcC
Q 003918 501 ADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFK 580 (786)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~ 580 (786)
+....+...+..+...++.+.|+..|++++..+|+++.+++.+|.++...|++++|+..|.++++.
T Consensus 183 ------------~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~-- 248 (287)
T 3qou_A 183 ------------DTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRX-- 248 (287)
T ss_dssp ------------SHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred ------------chHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--
Confidence 444444454555667788888999999999999999999999999999999999999999999997
Q ss_pred CCCh--HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhh
Q 003918 581 YPHV--KDIWVTYLSKFVKRYGKTKLERARELFENAVET 617 (786)
Q Consensus 581 ~p~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 617 (786)
+|.+ ..++..++..+.. .|+.++|...|++++..
T Consensus 249 ~p~~~~~~a~~~l~~~~~~---~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 249 DLTAADGQTRXTFQEILAA---LGTGDALASXYRRQLYA 284 (287)
T ss_dssp CTTGGGGHHHHHHHHHHHH---HCTTCHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHH---cCCCCcHHHHHHHHHHH
Confidence 6776 7788876655543 27788899999888753
No 103
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.50 E-value=1.6e-12 Score=132.13 Aligned_cols=170 Identities=11% Similarity=-0.036 Sum_probs=144.9
Q ss_pred hcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHH
Q 003918 513 KSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYL 592 (786)
Q Consensus 513 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~ 592 (786)
.+...+...+..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++.. +|+....+....
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~ 192 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQ 192 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHH
Confidence 456778888999999999999999999999999999999999999999999999999999999997 576554444322
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHH
Q 003918 593 SKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAE 672 (786)
Q Consensus 593 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~ 672 (786)
..+. ..+..+.|+..|++++...|+ +..+++.+|.++...|++++|+..|.++++..|++.+...+..++..+..
T Consensus 193 ~~l~---~~~~~~~a~~~l~~al~~~P~--~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 193 IELL---XQAADTPEIQQLQQQVAENPE--DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHH---HHHTSCHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHH
T ss_pred HHHH---hhcccCccHHHHHHHHhcCCc--cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHH
Confidence 2222 225678899999999999999 78999999999999999999999999999999987556666666776677
Q ss_pred hcChhHHHHHHHHHHHh
Q 003918 673 IFGVPKTREIYEQAIES 689 (786)
Q Consensus 673 ~~~~~~A~~~~~~al~~ 689 (786)
.|+.+.|...|++++..
T Consensus 268 ~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 268 LGTGDALASXYRRQLYA 284 (287)
T ss_dssp HCTTCHHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHHH
Confidence 88999999999988754
No 104
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.50 E-value=7.6e-13 Score=129.30 Aligned_cols=194 Identities=7% Similarity=-0.086 Sum_probs=133.4
Q ss_pred cHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhc
Q 003918 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAA 501 (786)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 501 (786)
++..++..|..+...|++++|+..|++++...|.++. ...++..++.++.+.|++++|+..|+++++..|
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P--------- 72 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPY-SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP--------- 72 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTT-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc---------
Confidence 4566777788888888888888888888887776532 125677778888888888888888888887776
Q ss_pred cCChhHHHHhhhcH---HHHHHHHHHHHH------------------cCChHHHHHHHHHHHhhccCCHHHHHHHHHHHH
Q 003918 502 DGNEPVQMKLHKSL---RLWTFYVDLEES------------------LGNLESTRAVYERILDLRIATPQIIINYALLLE 560 (786)
Q Consensus 502 ~~~~~~~~~~~~~~---~~~~~~~~~~~~------------------~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 560 (786)
+++ .++..++.++.. .|++++|+..|+++++..|+++.++..+..+..
T Consensus 73 -----------~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~ 141 (225)
T 2yhc_A 73 -----------THPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVF 141 (225)
T ss_dssp -----------TCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHH
T ss_pred -----------CCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHH
Confidence 222 245555555443 456777777777777777777655443322211
Q ss_pred HcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccC-cHHHHHHHHHHHHHcCC
Q 003918 561 EHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADA-VKPLYLQYAKLEEDYGL 639 (786)
Q Consensus 561 ~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~a~~~~~~g~ 639 (786)
-.+. +. ......+..+.. .|++++|+..|+++++..|++. ...++..++.++.+.|+
T Consensus 142 ~~~~-----------~~--------~~~~~~a~~~~~---~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~ 199 (225)
T 2yhc_A 142 LKDR-----------LA--------KYEYSVAEYYTE---RGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQM 199 (225)
T ss_dssp HHHH-----------HH--------HHHHHHHHHHHH---HTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTC
T ss_pred HHHH-----------HH--------HHHHHHHHHHHH---cCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCC
Confidence 1110 00 111222333332 3789999999999999999832 23799999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCc
Q 003918 640 AKRAMKVYDQATKAVPNHE 658 (786)
Q Consensus 640 ~~~A~~~~~~~l~~~p~~~ 658 (786)
+++|+..++++....|++.
T Consensus 200 ~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 200 NAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHHHHHCCSCCC
T ss_pred cHHHHHHHHHHHhhCCCch
Confidence 9999999999999888753
No 105
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.49 E-value=1.7e-12 Score=126.76 Aligned_cols=190 Identities=11% Similarity=0.079 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003918 462 SIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERI 541 (786)
Q Consensus 462 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 541 (786)
..++..|..+...|++++|+..|++++...|.. .....++..+|.++...|++++|+..|+++
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~-----------------~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~ 67 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFG-----------------PYSQQVQLDLIYAYYKNADLPLAQAAIDRF 67 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS-----------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----------------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 667778888888899999999999998876610 012467888888888999999999999999
Q ss_pred HhhccCCHH---HHHHHHHHHHH------------------cccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhC
Q 003918 542 LDLRIATPQ---IIINYALLLEE------------------HKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYG 600 (786)
Q Consensus 542 l~~~p~~~~---~~~~~~~~~~~------------------~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~ 600 (786)
++..|+++. +++.+|.++.. .|++++|+..|+++++. +|++..++........
T Consensus 68 l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~---- 141 (225)
T 2yhc_A 68 IRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVF---- 141 (225)
T ss_dssp HHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHH----
T ss_pred HHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHH----
Confidence 999888764 67777877765 45667777777777765 4655544432211000
Q ss_pred CCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchh-hHHHHHHHHHHHhcChhHH
Q 003918 601 KTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKL-GMYEIYIARAAEIFGVPKT 679 (786)
Q Consensus 601 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-~~~~~~~~~~~~~~~~~~A 679 (786)
.. . . .......+|.++.+.|++++|+..|+++++..|+++.. ..+...+..+.+.|++++|
T Consensus 142 ---~~------~-------~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A 203 (225)
T 2yhc_A 142 ---LK------D-------R--LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQA 203 (225)
T ss_dssp ---HH------H-------H--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ---HH------H-------H--HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHH
Confidence 00 0 0 01234678999999999999999999999999987533 3445555566789999999
Q ss_pred HHHHHHHHHhcCCC
Q 003918 680 REIYEQAIESGLPD 693 (786)
Q Consensus 680 ~~~~~~al~~~~p~ 693 (786)
+..++++... .|+
T Consensus 204 ~~~~~~l~~~-~~~ 216 (225)
T 2yhc_A 204 EKVAKIIAAN-SSN 216 (225)
T ss_dssp HHHHHHHHHC-CSC
T ss_pred HHHHHHHHhh-CCC
Confidence 9999999887 665
No 106
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.49 E-value=1.9e-13 Score=127.87 Aligned_cols=167 Identities=12% Similarity=0.024 Sum_probs=110.6
Q ss_pred cHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhc
Q 003918 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAA 501 (786)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 501 (786)
....+...|..+...|++++|+..|++++..+|+++ .+|..++.++...|++++|+..|++++...|
T Consensus 5 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~----~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--------- 71 (176)
T 2r5s_A 5 PDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRG----DVKLAKADCLLETKQFELAQELLATIPLEYQ--------- 71 (176)
T ss_dssp -CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSH----HHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC---------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH----HHHHHHHHHHHHCCCHHHHHHHHHHhhhccC---------
Confidence 345667777777788888888888888888888776 7777888888888888888888877776655
Q ss_pred cCChhHHHHhhhcHHHHHHHHHHH-HHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcC
Q 003918 502 DGNEPVQMKLHKSLRLWTFYVDLE-ESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFK 580 (786)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~ 580 (786)
++..+...+.+. ...+....|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++..+
T Consensus 72 ------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 139 (176)
T 2r5s_A 72 ------------DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNL 139 (176)
T ss_dssp ------------CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred ------------ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCc
Confidence 122222223221 1222334567777777777777777777777777777777777777777777622
Q ss_pred CCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Q 003918 581 YPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVE 616 (786)
Q Consensus 581 ~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 616 (786)
.+.+..+|..++..+.. .|+.++|...|++++.
T Consensus 140 ~~~~~~a~~~l~~~~~~---~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 140 GAQDGEVKKTFMDILSA---LGQGNAIASKYRRQLY 172 (176)
T ss_dssp TTTTTHHHHHHHHHHHH---HCSSCHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHH---hCCCCcHHHHHHHHHH
Confidence 22234466665543332 2667777777777764
No 107
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.48 E-value=3.7e-13 Score=117.66 Aligned_cols=114 Identities=12% Similarity=0.049 Sum_probs=73.4
Q ss_pred CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhh
Q 003918 421 KPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVA 500 (786)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 500 (786)
+....+...|..+.+.|++++|+..|+++++.+|.++ .+|..+|.++.+.|++++|+..|++++.+.|
T Consensus 11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-------- 78 (126)
T 4gco_A 11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENA----ILYSNRAACLTKLMEFQRALDDCDTCIRLDS-------- 78 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHhhHHHhhccHHHHHHHHHHHHHhhh--------
Confidence 4555666666666666666666666666666666665 6666666666666666666666666666666
Q ss_pred ccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHH
Q 003918 501 ADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALL 558 (786)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 558 (786)
+++.+|..+|.++..+|++++|+..|+++++++|+++.++..++.+
T Consensus 79 ------------~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 79 ------------KFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp ------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ------------hhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 5556666666666666666666666666666666666666555543
No 108
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.46 E-value=9.2e-14 Score=125.25 Aligned_cols=115 Identities=7% Similarity=-0.069 Sum_probs=86.2
Q ss_pred HHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHH
Q 003918 444 VIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVD 523 (786)
Q Consensus 444 ~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (786)
..|++++..+|+++ ..|..+|..+.+.|++++|+..|++++...| .++.+|..+|.
T Consensus 23 ~~l~~al~l~p~~~----~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P--------------------~~~~~~~~lg~ 78 (151)
T 3gyz_A 23 ATLKDINAIPDDMM----DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF--------------------YNVDYIMGLAA 78 (151)
T ss_dssp CCTGGGCCSCHHHH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------TCHHHHHHHHH
T ss_pred CCHHHHhCCCHHHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------------------CCHHHHHHHHH
Confidence 34555666677665 6777777777777777777777777777777 67777777777
Q ss_pred HHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCCh
Q 003918 524 LEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHV 584 (786)
Q Consensus 524 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~ 584 (786)
++...|++++|+..|+++++.+|+++.+|+++|.++...|++++|+..|+++++. .|+.
T Consensus 79 ~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l--~~~~ 137 (151)
T 3gyz_A 79 IYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH--SNDE 137 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH
T ss_pred HHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCH
Confidence 7777777777777777777777777777777777777777777777777777776 3544
No 109
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.46 E-value=5.9e-13 Score=116.39 Aligned_cols=106 Identities=12% Similarity=0.088 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003918 462 SIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERI 541 (786)
Q Consensus 462 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 541 (786)
..+...|..+.+.|++++|+..|+++++..| .++.+|..+|.++..+|++++|+..|+++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p--------------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 73 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP--------------------ENAILYSNRAACLTKLMEFQRALDDCDTC 73 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------------------CCHHHHHHHhhHHHhhccHHHHHHHHHHH
Confidence 4444445555555555555555555555444 44445555555555555555555555555
Q ss_pred HhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHH
Q 003918 542 LDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWV 589 (786)
Q Consensus 542 l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~ 589 (786)
++++|+++.+|..+|.++...|++++|+..|++++++ +|++..++.
T Consensus 74 l~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l--~P~~~~a~~ 119 (126)
T 4gco_A 74 IRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV--DPSNEEARE 119 (126)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcCCHHHHH
Confidence 5555555555555555555555555555555555554 444444443
No 110
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.44 E-value=1.4e-12 Score=146.92 Aligned_cols=158 Identities=15% Similarity=0.080 Sum_probs=75.4
Q ss_pred CChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHH
Q 003918 437 KDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLR 516 (786)
Q Consensus 437 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (786)
|++++|+..|+++++.+|++. .+|..++..+...|++++|+..|+++++..| ++..
T Consensus 3 g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--------------------~~~~ 58 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDF----VAWLMLADAELGMGDTTAGEMAVQRGLALHP--------------------GHPE 58 (568)
T ss_dssp ------------------CCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHTTST--------------------TCHH
T ss_pred ccHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------------------CCHH
Confidence 445555555555555555554 5555555555555555555555555555555 4455
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Q 003918 517 LWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFV 596 (786)
Q Consensus 517 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~ 596 (786)
+|..++.++...|++++|...|+++++.+|+++.++..+|.++...|++++|++.|+++++. +|.+..++..++..+.
T Consensus 59 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~ 136 (568)
T 2vsy_A 59 AVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRR 136 (568)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555554 4555555554333222
Q ss_pred HHhCCCChHHHHHHHHHHHhhCCc
Q 003918 597 KRYGKTKLERARELFENAVETAPA 620 (786)
Q Consensus 597 ~~~~~~~~~~A~~~~~~al~~~p~ 620 (786)
....-|++++|...|+++++.+|.
T Consensus 137 ~~~~~g~~~~A~~~~~~al~~~p~ 160 (568)
T 2vsy_A 137 RLCDWRALDVLSAQVRAAVAQGVG 160 (568)
T ss_dssp HTTCCTTHHHHHHHHHHHHHHTCC
T ss_pred HhhccccHHHHHHHHHHHHhcCCc
Confidence 100014555555555555555555
No 111
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.44 E-value=8.6e-12 Score=128.19 Aligned_cols=54 Identities=13% Similarity=0.095 Sum_probs=25.5
Q ss_pred CChHHHHHHHHHHHhhCCccC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 003918 602 TKLERARELFENAVETAPADA----VKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVP 655 (786)
Q Consensus 602 ~~~~~A~~~~~~al~~~p~~~----~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p 655 (786)
|++++|+..|+++++..|... ...++.++|.++...|++++|+..|+++++..|
T Consensus 129 g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 186 (307)
T 2ifu_A 129 LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYK 186 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 445555555555544433211 123444555555555555555555555554443
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.43 E-value=1.9e-12 Score=145.65 Aligned_cols=161 Identities=12% Similarity=0.141 Sum_probs=134.9
Q ss_pred CCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccC
Q 003918 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKN 476 (786)
Q Consensus 397 ~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~ 476 (786)
|++++|+..|++++ ..+| .+..+|..+|..+...|++++|+..|+++++.+|++. .+|..++.++...|+
T Consensus 3 g~~~~A~~~~~~al-~~~p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~ 72 (568)
T 2vsy_A 3 ADGPRELLQLRAAV-RHRP-----QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHP----EAVARLGRVRWTQQR 72 (568)
T ss_dssp ------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCH----HHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHH-HhCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCC
Confidence 67889999999999 4666 6789999999999999999999999999999999997 899999999999999
Q ss_pred HHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHH
Q 003918 477 FKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYA 556 (786)
Q Consensus 477 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 556 (786)
+++|...|+++++..| ++...|..++.++...|++++|+..|+++++.+|+++.++..++
T Consensus 73 ~~~A~~~~~~al~~~p--------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 132 (568)
T 2vsy_A 73 HAEAAVLLQQASDAAP--------------------EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLL 132 (568)
T ss_dssp HHHHHHHHHHHHHHCT--------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC--------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 9999999999999999 78899999999999999999999999999999999999999999
Q ss_pred HHHHHc---ccHHHHHHHHHHHHhhcCCCChHHHHH
Q 003918 557 LLLEEH---KYFEDAFRVYERGVKIFKYPHVKDIWV 589 (786)
Q Consensus 557 ~~~~~~---g~~~~A~~~~~~al~~~~~p~~~~~~~ 589 (786)
.++... |++++|++.++++++. +|.+...+.
T Consensus 133 ~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~ 166 (568)
T 2vsy_A 133 NWRRRLCDWRALDVLSAQVRAAVAQ--GVGAVEPFA 166 (568)
T ss_dssp HHHHHTTCCTTHHHHHHHHHHHHHH--TCCCSCHHH
T ss_pred HHHHHhhccccHHHHHHHHHHHHhc--CCcccChHH
Confidence 999999 9999999999999998 576655444
No 113
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.42 E-value=2.7e-13 Score=122.15 Aligned_cols=116 Identities=11% Similarity=0.041 Sum_probs=105.0
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 003918 536 AVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAV 615 (786)
Q Consensus 536 ~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 615 (786)
..|++++..+|+++.+|+.+|..+...|++++|+..|++++.. +|.++.+|..++..+. ..|++++|+..|++++
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~---~~g~~~~Ai~~~~~al 97 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQ---IKEQFQQAADLYAVAF 97 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHH
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH---HHccHHHHHHHHHHHH
Confidence 4678888999999999999999999999999999999999998 7999999998765554 3488999999999999
Q ss_pred hhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 003918 616 ETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHE 658 (786)
Q Consensus 616 ~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~ 658 (786)
+.+|+ ++.+|+++|.++...|++++|+..|+++++..|+++
T Consensus 98 ~l~P~--~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 98 ALGKN--DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHSSS--CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred hhCCC--CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999 678999999999999999999999999999998743
No 114
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.41 E-value=7e-12 Score=110.69 Aligned_cols=130 Identities=15% Similarity=0.331 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCC
Q 003918 425 LWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGN 504 (786)
Q Consensus 425 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 504 (786)
+|..+|..+...|++++|...|++++..+|.+. ..|..++.++...|++++|..++++++...|
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~------------ 66 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA----EAWYNLGNAYYKQGDYDEAIEYYQKALELDP------------ 66 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcch----hHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC------------
Confidence 567777777788888888888888887777765 6777777777778888888888888877766
Q ss_pred hhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 003918 505 EPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKI 578 (786)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 578 (786)
.+...|..++.++...|++++|...|++++...|.++.++..++.++...|++++|+..+++++..
T Consensus 67 --------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 67 --------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp --------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred --------CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 566777777777777888888888888888877777777888888888888888888888877775
No 115
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.38 E-value=2.9e-12 Score=129.70 Aligned_cols=198 Identities=12% Similarity=0.009 Sum_probs=143.2
Q ss_pred CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhh
Q 003918 421 KPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVA 500 (786)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 500 (786)
.....+..+|..+...|++++|+..|++++..+|++. .+|..++.++...|++++|+..+++++...|
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-------- 69 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA----VYYTNRALCYLKMQQPEQALADCRRALELDG-------- 69 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT--------
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccH----HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--------
Confidence 3567888889999999999999999999999999887 8889999999999999999999999999988
Q ss_pred ccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcC
Q 003918 501 ADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFK 580 (786)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~ 580 (786)
++..++..+|.++...|++++|+..|+++++.+|+++..+...+......+ .+..........
T Consensus 70 ------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-- 132 (281)
T 2c2l_A 70 ------------QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA---KKKRWNSIEERR-- 132 (281)
T ss_dssp ------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHH---HHHHHHHHHHTC--
T ss_pred ------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHH---HHHHHHHHHHHH--
Confidence 778888899999999999999999999999988876432222222111111 111222222222
Q ss_pred CCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcC
Q 003918 581 YPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDY-GLAKRAMKVYDQATKAV 654 (786)
Q Consensus 581 ~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~-g~~~~A~~~~~~~l~~~ 654 (786)
.|.+..+...+...+ .|++++|++.++++++..|+ +..+...+..++.+. +.+++|..+|.++.+..
T Consensus 133 ~~~~~~i~~~l~~l~-----~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 133 IHQESELHSYLTRLI-----AAERERELEECQRNHEGHED--DGHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp CCCCCHHHHHHHHHH-----HHHHHHHHTTTSGGGTTTSC--HHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HhhhHHHHHHHHHHH-----HHHHHHHHHHHHhhhccccc--hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 355555554433322 15688888888888888887 556666666666664 67788888888776543
No 116
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.38 E-value=3.2e-11 Score=106.39 Aligned_cols=134 Identities=15% Similarity=0.298 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q 003918 516 RLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKF 595 (786)
Q Consensus 516 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~ 595 (786)
..|..++.++...|++++|...|+++++..|.++.++..++.++...|++++|+..+++++.. .|.+...|..++..+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 356778888889999999999999999999999999999999999999999999999999987 588888887765544
Q ss_pred HHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 003918 596 VKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPN 656 (786)
Q Consensus 596 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~ 656 (786)
. ..|++++|...|+++++..|. +..++..++.++...|++++|...++++++..|.
T Consensus 80 ~---~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 Y---KQGDYDEAIEYYQKALELDPR--SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp H---TTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred H---HhcCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 3 568899999999999999988 6788999999999999999999999999998875
No 117
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.37 E-value=3.1e-12 Score=115.39 Aligned_cols=122 Identities=10% Similarity=0.002 Sum_probs=108.4
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 003918 534 TRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFEN 613 (786)
Q Consensus 534 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 613 (786)
+...|++++..+|+++..++.+|..+...|++++|+..|++++.. +|.++.+|..++..+. ..|++++|+..|++
T Consensus 6 ~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~---~~g~~~~A~~~~~~ 80 (148)
T 2vgx_A 6 GGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQ---AMGQYDLAIHSYSY 80 (148)
T ss_dssp CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH---HTTCHHHHHHHHHH
T ss_pred hhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHH---HHhhHHHHHHHHHH
Confidence 345789999999999999999999999999999999999999997 7999999988665444 35889999999999
Q ss_pred HHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhH
Q 003918 614 AVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGM 662 (786)
Q Consensus 614 al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 662 (786)
+++.+|+ +..+++.+|.++...|++++|+..|+++++..|+++....
T Consensus 81 al~l~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 81 GAVMDIX--EPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp HHHHSTT--CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHhcCCC--CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 9999998 6789999999999999999999999999999998766543
No 118
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.35 E-value=6.8e-12 Score=123.29 Aligned_cols=212 Identities=11% Similarity=0.056 Sum_probs=165.9
Q ss_pred HcCChhHHHHHHHHHHhccCCChhhHHHHHHHH-------HHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCCh-h
Q 003918 435 TYKDIANARVIFDKAVQVNYKTVDHLASIWCEW-------AEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNE-P 506 (786)
Q Consensus 435 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-------a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-~ 506 (786)
..++...|+..|.+++..+|+.+ +.|+.+ +..+...+...+++..+.+.+.+.|..+.-+....... .
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~----Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESAC----DAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCC
T ss_pred cCCCHHHHHHHHHHHHHhChhhh----HHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccc
Confidence 47999999999999999999998 999999 78888888889999999999999885431111000000 0
Q ss_pred HHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCCh-H
Q 003918 507 VQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHV-K 585 (786)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~-~ 585 (786)
+.-.+.....++..|+.++...|++++|...|+.++...|.++ ..+.++.++.+.|++++|+..|+++... ++|.. .
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~d~~~~~ 171 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKW-PDKFLAG 171 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGC-SCHHHHH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhcc-CCcccHH
Confidence 0000013357888999999999999999999999999999888 9999999999999999999999988774 12221 2
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhC--CccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 003918 586 DIWVTYLSKFVKRYGKTKLERARELFENAVETA--PADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPN 656 (786)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~ 656 (786)
.+++..+. .+. ..|++++|...|++++... |.. ....++.+|.++...|+.++|+..|++++...|.
T Consensus 172 ~a~~~LG~-al~--~LG~~~eAl~~l~~a~~g~~~P~~-~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 172 AAGVAHGV-AAA--NLALFTEAERRLTEANDSPAGEAC-ARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHH-HHH--HTTCHHHHHHHHHHHHTSTTTTTT-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHH-HHH--HCCCHHHHHHHHHHHhcCCCCccc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 35655443 343 3488999999999998654 431 3568899999999999999999999999999996
No 119
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.35 E-value=4.4e-12 Score=114.38 Aligned_cols=112 Identities=10% Similarity=0.031 Sum_probs=86.8
Q ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHH
Q 003918 443 RVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYV 522 (786)
Q Consensus 443 ~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (786)
...|++++..+|++. ..+..++..+...|++++|+..|++++...| .++.+|..++
T Consensus 7 ~~~~~~al~~~p~~~----~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--------------------~~~~~~~~lg 62 (148)
T 2vgx_A 7 GGTIAMLNEISSDTL----EQLYSLAFNQYQSGXYEDAHXVFQALCVLDH--------------------YDSRFFLGLG 62 (148)
T ss_dssp CCSHHHHTTCCHHHH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------TCHHHHHHHH
T ss_pred hhhHHHHHcCCHhhH----HHHHHHHHHHHHcCChHHHHHHHHHHHHcCc--------------------ccHHHHHHHH
Confidence 345677777777665 6777777777777888888888888877777 6777777777
Q ss_pred HHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 003918 523 DLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKI 578 (786)
Q Consensus 523 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 578 (786)
.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|+++++.
T Consensus 63 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 63 ACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777888888888888888888888888888888888888888888888888776
No 120
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.33 E-value=3.8e-11 Score=123.29 Aligned_cols=211 Identities=11% Similarity=0.073 Sum_probs=153.7
Q ss_pred CCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccC
Q 003918 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKN 476 (786)
Q Consensus 397 ~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~ 476 (786)
|++++|.++++++.+.... . ++...++++.|...|.++ +.++...|+
T Consensus 5 ~~~~eA~~~~~~a~k~~~~------~---------~~~~~~~~~~A~~~~~~a------------------~~~~~~~g~ 51 (307)
T 2ifu_A 5 QKISEAHEHIAKAEKYLKT------S---------FMKWKPDYDSAASEYAKA------------------AVAFKNAKQ 51 (307)
T ss_dssp HHHHHHHHHHHHHHHHHCC------C---------SSSCSCCHHHHHHHHHHH------------------HHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHccc------c---------ccCCCCCHHHHHHHHHHH------------------HHHHHHcCC
Confidence 4556777888877754321 1 011146777777777665 345567899
Q ss_pred HHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccC--C----HH
Q 003918 477 FKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIA--T----PQ 550 (786)
Q Consensus 477 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~----~~ 550 (786)
+++|...|.+++.+.+.. .........+..++.++...|++++|+..|++++++.+. + ..
T Consensus 52 ~~~A~~~~~~al~~~~~~--------------~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 52 LEQAKDAYLQEAEAHANN--------------RSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHHHHHHHHHHHT--------------TCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999998765410 000123567888899999999999999999999998543 2 35
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCCh----HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCc---
Q 003918 551 IIINYALLLEEHKYFEDAFRVYERGVKIFKYPHV----KDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAV--- 623 (786)
Q Consensus 551 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~--- 623 (786)
++.++|.++.. |++++|+..|++++.+.+...+ ..++..++..+. ..|++++|+..|+++++..|....
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~ 193 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLV---RQQKFDEAAASLQKEKSMYKEMENYPT 193 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHHcCChhH
Confidence 78899999988 9999999999999998532211 345555444333 458999999999999998665321
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Q 003918 624 -KPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEK 659 (786)
Q Consensus 624 -~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 659 (786)
...+...+.++...|++++|+..|++++ ..|....
T Consensus 194 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~ 229 (307)
T 2ifu_A 194 CYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSG 229 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCC
Confidence 3477788888988999999999999999 8886543
No 121
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.33 E-value=3.8e-12 Score=128.82 Aligned_cols=188 Identities=12% Similarity=0.034 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003918 462 SIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERI 541 (786)
Q Consensus 462 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 541 (786)
..+...|..+...|++++|+..|++++...| ++..+|..++.++...|++++|+..|+++
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~a 64 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNP--------------------LVAVYYTNRALCYLKMQQPEQALADCRRA 64 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------------------ccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 6677777777888888888888888887777 67777888888888888888888888888
Q ss_pred HhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCCh-----HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Q 003918 542 LDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHV-----KDIWVTYLSKFVKRYGKTKLERARELFENAVE 616 (786)
Q Consensus 542 l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~-----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 616 (786)
++.+|+++.++..+|.++...|++++|+..|+++++. +|++ ..+|..+ . ..++.........
T Consensus 65 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~-~----------~~~~~~~~~~~~~ 131 (281)
T 2c2l_A 65 LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL--AKEQRLNFGDDIPSAL-R----------IAKKKRWNSIEER 131 (281)
T ss_dssp TTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHTTCCCCSHHHHHH-H----------HHHHHHHHHHHHT
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHH-H----------HHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888876 3433 1223221 0 1222333333334
Q ss_pred hCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHh-cChhHHHHHHHHHHH
Q 003918 617 TAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEI-FGVPKTREIYEQAIE 688 (786)
Q Consensus 617 ~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~ 688 (786)
..|. +..+...++.+. .|++++|++.++++++..|++... .........+. +.+++|.++|.++.+
T Consensus 132 ~~~~--~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~~~--~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 132 RIHQ--ESELHSYLTRLI--AAERERELEECQRNHEGHEDDGHI--RAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp CCCC--CCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHHHH--THHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHhh--hHHHHHHHHHHH--HHHHHHHHHHHHhhhccccchhhh--hhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4555 334555555554 577788888888888777754322 22222222222 556777777777765
No 122
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.33 E-value=1.1e-11 Score=121.77 Aligned_cols=201 Identities=13% Similarity=0.031 Sum_probs=158.5
Q ss_pred HcCChHHHHHHHHHHHhhccCCHHHHHHH-------HHHHHHcccHHHHHHHHHHHHhhcCCCCh---------------
Q 003918 527 SLGNLESTRAVYERILDLRIATPQIIINY-------ALLLEEHKYFEDAFRVYERGVKIFKYPHV--------------- 584 (786)
Q Consensus 527 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~-------~~~~~~~g~~~~A~~~~~~al~~~~~p~~--------------- 584 (786)
..++...|+..|.++++.+|..+++|+.+ +.++...+...+++..+.+.+.+ .|..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCcccccc
Confidence 47899999999999999999999999999 89999999999999999999995 2332
Q ss_pred ------HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-
Q 003918 585 ------KDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNH- 657 (786)
Q Consensus 585 ------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~- 657 (786)
..++..|+..+.. .|++++|++.|+.++...|+ .. ..+..+.++.+.|++++|+..|+.+....++.
T Consensus 96 ~~v~~r~dl~LayA~~L~~---~g~y~eA~~~l~~~~~~~p~--~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~ 169 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAA---QGNYADAMEALEAAPVAGSE--HL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFL 169 (282)
T ss_dssp EECSSHHHHHHHHHHHHHH---HTCHHHHHHHHTSSCCTTCH--HH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHH
T ss_pred cccCCHhHHHHHHHHHHHH---CCCHHHHHHHHHHHHhcCCc--hH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCccc
Confidence 3455556655553 37899999999999988887 55 88889999999999999999998776632111
Q ss_pred -chhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcC-CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCCCHHH
Q 003918 658 -EKLGMYEIYIARAAEIFGVPKTREIYEQAIESGL-PDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEF 735 (786)
Q Consensus 658 -~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~ 735 (786)
..+.++.+. .+...|++++|+..|++++.... |. ....+++..|.++.++|+.++|+.+|++++.. +|+ ...
T Consensus 170 ~~~a~~~LG~--al~~LG~~~eAl~~l~~a~~g~~~P~-~~~da~~~~glaL~~lGr~deA~~~l~~a~a~-~P~--~~~ 243 (282)
T 4f3v_A 170 AGAAGVAHGV--AAANLALFTEAERRLTEANDSPAGEA-CARAIAWYLAMARRSQGNESAAVALLEWLQTT-HPE--PKV 243 (282)
T ss_dssp HHHHHHHHHH--HHHHTTCHHHHHHHHHHHHTSTTTTT-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-SCC--HHH
T ss_pred HHHHHHHHHH--HHHHCCCHHHHHHHHHHHhcCCCCcc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCc--HHH
Confidence 123344443 34678999999999999985411 33 14568899999999999999999999999997 787 666
Q ss_pred HHHHHH
Q 003918 736 WNRWHE 741 (786)
Q Consensus 736 ~~~~~~ 741 (786)
+..+.+
T Consensus 244 ~~aL~~ 249 (282)
T 4f3v_A 244 AAALKD 249 (282)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 666544
No 123
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.33 E-value=1e-10 Score=112.70 Aligned_cols=178 Identities=10% Similarity=0.018 Sum_probs=129.0
Q ss_pred hHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcc----C
Q 003918 401 KQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHK----N 476 (786)
Q Consensus 401 ~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g----~ 476 (786)
+|+..|+++.+. .++.++..+|.++...+++++|+..|+++.+. .++ ..+..++.++.. + +
T Consensus 4 eA~~~~~~aa~~--------g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~----~a~~~lg~~y~~-~g~~~~ 68 (212)
T 3rjv_A 4 EPGSQYQQQAEA--------GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDG----DALALLAQLKIR-NPQQAD 68 (212)
T ss_dssp CTTHHHHHHHHT--------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCH----HHHHHHHHHTTS-STTSCC
T ss_pred hHHHHHHHHHHC--------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCH----HHHHHHHHHHHc-CCCCCC
Confidence 467778887753 45778888888888888888888888888764 444 777778887776 5 7
Q ss_pred HHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhcc--CCHH
Q 003918 477 FKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEES----LGNLESTRAVYERILDLRI--ATPQ 550 (786)
Q Consensus 477 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~al~~~p--~~~~ 550 (786)
+++|+.+|+++... .++..+..++.++.. .+++++|+..|+++.+..| .++.
T Consensus 69 ~~~A~~~~~~A~~~----------------------g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~ 126 (212)
T 3rjv_A 69 YPQARQLAEKAVEA----------------------GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVD 126 (212)
T ss_dssp HHHHHHHHHHHHHT----------------------TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHH
T ss_pred HHHHHHHHHHHHHC----------------------CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHH
Confidence 88888888888643 235667777777765 6788888888888888766 3478
Q ss_pred HHHHHHHHHHH----cccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHhhCCc
Q 003918 551 IIINYALLLEE----HKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKT-----KLERARELFENAVETAPA 620 (786)
Q Consensus 551 ~~~~~~~~~~~----~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~-----~~~~A~~~~~~al~~~p~ 620 (786)
++..+|.+|.. .+++++|+..|+++++. |.++.++..++. ++.. +.| ++++|+..|+++++....
T Consensus 127 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~a~~~Lg~-~y~~-g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 127 AQMLLGLIYASGVHGPEDDVKASEYFKGSSSL---SRTGYAEYWAGM-MFQQ-GEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT---SCTTHHHHHHHH-HHHH-CBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc---CCCHHHHHHHHH-HHHc-CCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 88888888877 67788888888888875 444455555443 3322 323 678888888888877543
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.31 E-value=6.4e-11 Score=109.00 Aligned_cols=133 Identities=19% Similarity=0.176 Sum_probs=114.1
Q ss_pred cHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhc
Q 003918 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAA 501 (786)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 501 (786)
.+..|..+|..+...|++++|+..|++++..+|.+. .+|..++.++...|++++|+..|++++...|
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~--------- 78 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA----IYYGNRSLAYLRTECYGYALGDATRAIELDK--------- 78 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---------
Confidence 456788888889999999999999999999988887 8888899999999999999999999998888
Q ss_pred cCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHH--HHHHHHcccHHHHHHHHHHHHhh
Q 003918 502 DGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINY--ALLLEEHKYFEDAFRVYERGVKI 578 (786)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~--~~~~~~~g~~~~A~~~~~~al~~ 578 (786)
.++.+|..++.++...|++++|+..|+++++.+|.++.++..+ +..+...|++++|++.+.++...
T Consensus 79 -----------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 79 -----------KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp -----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 6778888899999999999999999999999999988888554 44477788888888888877664
No 125
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.30 E-value=2.4e-11 Score=113.52 Aligned_cols=127 Identities=12% Similarity=0.162 Sum_probs=101.8
Q ss_pred HHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhh
Q 003918 434 ETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHK 513 (786)
Q Consensus 434 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (786)
...|++++|+..|++++..+|+++ .+|..++.++...|++++|+..|++++...| .
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--------------------~ 76 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNS----EQWALLGEYYLWQNDYSNSLLAYRQALQLRG--------------------E 76 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC--------------------S
T ss_pred hhccCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--------------------C
Confidence 346778888888888888888876 7888888888888888888888888888877 6
Q ss_pred cHHHHHHHHHH-HHHcCCh--HHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHH
Q 003918 514 SLRLWTFYVDL-EESLGNL--ESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKD 586 (786)
Q Consensus 514 ~~~~~~~~~~~-~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~ 586 (786)
++.+|..++.+ +...|++ ++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++.. +|.+..
T Consensus 77 ~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~ 150 (177)
T 2e2e_A 77 NAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL--NSPRIN 150 (177)
T ss_dssp CHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CCTTSC
T ss_pred CHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh--CCCCcc
Confidence 77788888888 6778887 88888888888888888888888888888888888888888888887 566544
No 126
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.30 E-value=1.1e-11 Score=111.05 Aligned_cols=105 Identities=12% Similarity=0.062 Sum_probs=55.9
Q ss_pred cHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhc
Q 003918 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAA 501 (786)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 501 (786)
+...++.+|..+...|++++|+..|++++..+|+++ .+|..++.++...|++++|+..|++++...|
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--------- 83 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDA----RYFLGLGACRQSLGLYEQALQSYSYGALMDI--------- 83 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC---------
Confidence 444555555555555555555555555555555554 5555555555555555555555555555555
Q ss_pred cCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHH
Q 003918 502 DGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQ 550 (786)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 550 (786)
+++.+|..++.++...|++++|+..|+++++..|+++.
T Consensus 84 -----------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 121 (142)
T 2xcb_A 84 -----------NEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPA 121 (142)
T ss_dssp -----------TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGG
T ss_pred -----------CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Confidence 44455555555555555555555555555555554443
No 127
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.30 E-value=3.7e-11 Score=112.21 Aligned_cols=128 Identities=6% Similarity=0.053 Sum_probs=112.0
Q ss_pred HcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCCh--
Q 003918 527 SLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKL-- 604 (786)
Q Consensus 527 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~-- 604 (786)
..|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|++++.. +|.++.+|..++..++. ..|++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~--~~~~~~~ 97 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYY--QASQHMT 97 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHH--HTTTCCC
T ss_pred hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH--hcCCcch
Confidence 4678999999999999999999999999999999999999999999999998 68899999887665233 23777
Q ss_pred HHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchh
Q 003918 605 ERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKL 660 (786)
Q Consensus 605 ~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 660 (786)
++|+..|+++++..|+ +..++..+|.++...|++++|...|+++++..|+++..
T Consensus 98 ~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 151 (177)
T 2e2e_A 98 AQTRAMIDKALALDSN--EITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINR 151 (177)
T ss_dssp HHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH
T ss_pred HHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccH
Confidence 9999999999999998 78899999999999999999999999999999987543
No 128
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.29 E-value=5.6e-12 Score=131.12 Aligned_cols=156 Identities=13% Similarity=0.057 Sum_probs=119.5
Q ss_pred CCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChh-----------hHHHHHH
Q 003918 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVD-----------HLASIWC 465 (786)
Q Consensus 397 ~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-----------~~~~~~~ 465 (786)
+++++|+..|+.++. .+| .....|..+|..+...|++++|+..|++++..+|.+.. ....+|.
T Consensus 127 ~~~~~A~~~~~~a~~-~~p-----~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~ 200 (336)
T 1p5q_A 127 KSFEKAKESWEMNSE-EKL-----EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHL 200 (336)
T ss_dssp EEEECCCCGGGCCHH-HHH-----HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHH-HHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHH
Confidence 445666666666663 333 56789999999999999999999999999999998720 0126777
Q ss_pred HHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhc
Q 003918 466 EWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLR 545 (786)
Q Consensus 466 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 545 (786)
.++.++.+.|++++|+..|++++.+.| +++.+|..++.++...|++++|+..|+++++.+
T Consensus 201 nla~~~~~~g~~~~A~~~~~~al~~~p--------------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 260 (336)
T 1p5q_A 201 NLAMCHLKLQAFSAAIESCNKALELDS--------------------NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 260 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC--------------------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 778888888888888888888887777 677777778888888888888888888888888
Q ss_pred cCCHHHHHHHHHHHHHcccHHHH-HHHHHHHHhh
Q 003918 546 IATPQIIINYALLLEEHKYFEDA-FRVYERGVKI 578 (786)
Q Consensus 546 p~~~~~~~~~~~~~~~~g~~~~A-~~~~~~al~~ 578 (786)
|+++.++..++.++...|++++| ...|++++..
T Consensus 261 P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 261 PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888877777777 4466666553
No 129
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.29 E-value=2.1e-10 Score=110.61 Aligned_cols=167 Identities=13% Similarity=0.069 Sum_probs=97.1
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcc----cHHHHHHHHHHHHhhcCCCChHHHHH
Q 003918 514 SLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHK----YFEDAFRVYERGVKIFKYPHVKDIWV 589 (786)
Q Consensus 514 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g----~~~~A~~~~~~al~~~~~p~~~~~~~ 589 (786)
++..+..++.++...+++++|+..|+++.+. .++.+++.+|.+|.. | ++++|+..|+++.+ +.++.++.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~----~g~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE----AGSKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH----TTCHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH----CCCHHHHH
Confidence 3466666666666677777777777777653 566777777777666 5 67777777777755 44555555
Q ss_pred HHHHHHHHHh-CCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCchhhHHH
Q 003918 590 TYLSKFVKRY-GKTKLERARELFENAVETAPADAVKPLYLQYAKLEED----YGLAKRAMKVYDQATKAVPNHEKLGMYE 664 (786)
Q Consensus 590 ~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~~ 664 (786)
.++..+..-. ..+++++|+..|+++++..|.+.....+..++.++.. .+++++|+..|+++++. |.++......
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~L 168 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWA 168 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHH
Confidence 5443322100 0356677777777777666521124566667776666 55666666666666665 3333333333
Q ss_pred HHHHHHHHhc-----ChhHHHHHHHHHHHh
Q 003918 665 IYIARAAEIF-----GVPKTREIYEQAIES 689 (786)
Q Consensus 665 ~~~~~~~~~~-----~~~~A~~~~~~al~~ 689 (786)
+.+.. ...| ++++|+..|+++++.
T Consensus 169 g~~y~-~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 169 GMMFQ-QGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHH-HCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHH-cCCCCCCCCCHHHHHHHHHHHHHc
Confidence 33322 1112 566666666666665
No 130
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.28 E-value=1.8e-11 Score=109.66 Aligned_cols=121 Identities=8% Similarity=-0.022 Sum_probs=102.3
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 003918 536 AVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAV 615 (786)
Q Consensus 536 ~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 615 (786)
..|++++..+|+++..++.+|..+...|++++|+..|++++.. +|.++.+|..++..+. ..|++++|+..|++++
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~---~~g~~~~A~~~~~~al 79 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQ---SLGLYEQALQSYSYGA 79 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHH
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHH---HHhhHHHHHHHHHHHH
Confidence 4678888889999999999999999999999999999999997 7999999988665444 3488999999999999
Q ss_pred hhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHH
Q 003918 616 ETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMY 663 (786)
Q Consensus 616 ~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 663 (786)
..+|+ +..++..+|.++...|++++|+..|+++++..|.++.....
T Consensus 80 ~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 125 (142)
T 2xcb_A 80 LMDIN--EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEAL 125 (142)
T ss_dssp HHCTT--CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHH
T ss_pred hcCCC--CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHH
Confidence 99998 66889999999999999999999999999999977655433
No 131
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.26 E-value=9.1e-11 Score=103.32 Aligned_cols=121 Identities=14% Similarity=0.092 Sum_probs=105.5
Q ss_pred CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhh
Q 003918 420 GKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRV 499 (786)
Q Consensus 420 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 499 (786)
+..+..|..+|..+...|++++|+..|++++..+|.+. .+|..++.++...|++++|+..|++++...|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~------- 81 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDA----KLYSNRAACYTKLLEFQLALKDCEECIQLEP------- 81 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCH----HHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-------
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-------
Confidence 46788889999999999999999999999999888886 8888889888889999999999999998888
Q ss_pred hccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHccc
Q 003918 500 AADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKY 564 (786)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~ 564 (786)
.+..+|..++.++...|++++|+..|+++++.+|.++.++..++.++...|+
T Consensus 82 -------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 82 -------------TFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp -------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred -------------CchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 6778888888888889999999999999999888888888888888877653
No 132
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.26 E-value=9.2e-12 Score=129.48 Aligned_cols=134 Identities=13% Similarity=0.073 Sum_probs=111.5
Q ss_pred hcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCC---------------HHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 003918 513 KSLRLWTFYVDLEESLGNLESTRAVYERILDLRIAT---------------PQIIINYALLLEEHKYFEDAFRVYERGVK 577 (786)
Q Consensus 513 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 577 (786)
.....|..++.++...|++++|+..|+++++..|++ ..+|.++|.++...|++++|+..|++++.
T Consensus 145 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 145 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 567888888999999999999999999999999988 58888899999999999999999999988
Q ss_pred hcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhc
Q 003918 578 IFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRA-MKVYDQATKA 653 (786)
Q Consensus 578 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A-~~~~~~~l~~ 653 (786)
. +|.+..+|..++..+. ..|++++|+..|+++++..|+ +..++..++.++...|++++| ..+|++++..
T Consensus 225 ~--~p~~~~a~~~lg~~~~---~~g~~~~A~~~~~~al~l~P~--~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 225 L--DSNNEKGLSRRGEAHL---AVNDFELARADFQKVLQLYPN--NKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp H--CTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCSS--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h--CCCcHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7 6888888887665444 347889999999999998888 677888888888888888887 5677776654
No 133
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.26 E-value=8.3e-11 Score=102.76 Aligned_cols=112 Identities=13% Similarity=0.026 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhcc
Q 003918 423 HTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAAD 502 (786)
Q Consensus 423 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 502 (786)
...|...|..+...|++++|+..|++++..+|+++ .+|..++.++...|++++|+..|++++...|
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p---------- 69 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA----RGYSNRAAALAKLMSFPEAIADCNKAIEKDP---------- 69 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC----------
Confidence 34555555555556666666666666665555554 5555555555555555555555555555555
Q ss_pred CChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhc------cCCHHHHHHHHHH
Q 003918 503 GNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLR------IATPQIIINYALL 558 (786)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~~~~~ 558 (786)
+++..|..++.++...|++++|+..|+++++.+ |+++.++..+..+
T Consensus 70 ----------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 70 ----------NFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp ----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred ----------CcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 445555555555555555555555555555555 4444444444433
No 134
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.23 E-value=1.8e-10 Score=100.95 Aligned_cols=121 Identities=15% Similarity=0.099 Sum_probs=101.0
Q ss_pred CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhh
Q 003918 421 KPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVA 500 (786)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 500 (786)
..+..+..+|..+...|++++|+..|++++..+|+++ .+|..++.++...|++++|+..+++++...|
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-------- 77 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANA----VYFCNRAAAYSKLGNYAGAVQDCERAICIDP-------- 77 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHhhchHHHHHHHHHHHhcCc--------
Confidence 4567788888888888888888888888888888776 7888888888888888888888888888777
Q ss_pred ccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccH
Q 003918 501 ADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYF 565 (786)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~ 565 (786)
+++.+|..++.++...|++++|...|+++++..|+++.++..++.++...|++
T Consensus 78 ------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 78 ------------AYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp ------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred ------------cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 66778888888888888888888888888888888888888888888777754
No 135
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.21 E-value=4.5e-10 Score=103.26 Aligned_cols=134 Identities=13% Similarity=0.043 Sum_probs=108.4
Q ss_pred hcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHH
Q 003918 513 KSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYL 592 (786)
Q Consensus 513 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~ 592 (786)
.....|...|..+...|++++|...|++++...|.++.+|..+|.++...|++++|+..+++++.. +|.++.+|..++
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a 88 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHH
Confidence 356778888888889999999999999999999999999999999999999999999999999987 688888888765
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhc
Q 003918 593 SKFVKRYGKTKLERARELFENAVETAPADAVKPLY--LQYAKLEEDYGLAKRAMKVYDQATKA 653 (786)
Q Consensus 593 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--~~~a~~~~~~g~~~~A~~~~~~~l~~ 653 (786)
..+. ..|++++|+..|+++++..|. +..++ ...+..+...|++++|+..+.+....
T Consensus 89 ~~~~---~~~~~~~A~~~~~~a~~~~p~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 89 ASNM---ALGKFRAALRDYETVVKVKPH--DKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHH---HTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH---HhccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 5443 347899999999999999888 45555 44444466778888888888776543
No 136
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.20 E-value=5.5e-10 Score=123.85 Aligned_cols=176 Identities=13% Similarity=0.050 Sum_probs=156.7
Q ss_pred hhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccC----------HHHHHHHHHHHhcCCchHHhhhhhccCChhHH
Q 003918 439 IANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKN----------FKGALELMRRATAEPSVEVRRRVAADGNEPVQ 508 (786)
Q Consensus 439 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 508 (786)
.++|...+++++..+|++. .+|...+.+....|+ +++++..+++++...|
T Consensus 45 ~eeal~~~~~~l~~nP~~~----taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p---------------- 104 (567)
T 1dce_A 45 DESVLELTSQILGANPDFA----TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP---------------- 104 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT----------------
T ss_pred CHHHHHHHHHHHHHCchhH----HHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC----------------
Confidence 4678999999999999998 999999999988888 9999999999999999
Q ss_pred HHhhhcHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcc-cHHHHHHHHHHHHhhcCCCChH
Q 003918 509 MKLHKSLRLWTFYVDLEESLG--NLESTRAVYERILDLRIATPQIIINYALLLEEHK-YFEDAFRVYERGVKIFKYPHVK 585 (786)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~~~p~~~ 585 (786)
++..+|...+.+....| ++++++..++++++.+|++..+|...+.+....| .++++++.++++++. +|.+.
T Consensus 105 ----K~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~--~p~n~ 178 (567)
T 1dce_A 105 ----KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNY 178 (567)
T ss_dssp ----TCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--TCCCH
T ss_pred ----CCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH--CCCCc
Confidence 89999999999999999 6699999999999999999999999999999999 899999999999997 89999
Q ss_pred HHHHHHHHHHHHHhC-----------CCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHH
Q 003918 586 DIWVTYLSKFVKRYG-----------KTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKR 642 (786)
Q Consensus 586 ~~~~~~~~~~~~~~~-----------~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~ 642 (786)
.+|......+..... .+.++++.+.+.+++..+|+ +..+|..++.++...|.+++
T Consensus 179 saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~--~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 179 SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN--DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSS--CSHHHHHHHHHHSCCCCCSC
T ss_pred cHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCC--CccHHHHHHHHHhcCCCccc
Confidence 999976544433211 14579999999999999999 66899999999888777555
No 137
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.20 E-value=1.3e-10 Score=128.80 Aligned_cols=196 Identities=12% Similarity=0.032 Sum_probs=163.8
Q ss_pred HHcCC-hHHHHHHHHHHHhhccCCHHHHHHHHHHHHHccc----------HHHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 003918 526 ESLGN-LESTRAVYERILDLRIATPQIIINYALLLEEHKY----------FEDAFRVYERGVKIFKYPHVKDIWVTYLSK 594 (786)
Q Consensus 526 ~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~----------~~~A~~~~~~al~~~~~p~~~~~~~~~~~~ 594 (786)
...|. .++|+..++++++.+|++..+|...+.++...|+ ++++++.++++++. +|.+..+|......
T Consensus 39 ~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~ 116 (567)
T 1dce_A 39 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWL 116 (567)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 34454 5678999999999999999999999999999988 99999999999997 79999999986543
Q ss_pred HHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHH--
Q 003918 595 FVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYG-LAKRAMKVYDQATKAVPNHEKLGMYEIYIARAA-- 671 (786)
Q Consensus 595 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~-- 671 (786)
+ ..++..+++++.+.++++++.+|. +..+|...+.+....| .++++++.+.++++.+|.+...|...+.+....
T Consensus 117 l-~~l~~~~~~~el~~~~k~l~~d~~--N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~ 193 (567)
T 1dce_A 117 L-SRLPEPNWARELELCARFLEADER--NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHP 193 (567)
T ss_dssp H-HTCSSCCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSC
T ss_pred H-HHcccccHHHHHHHHHHHHhhccc--cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcc
Confidence 3 333222679999999999999999 6789999999999999 999999999999999999888888877776432
Q ss_pred ----------HhcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHH------------HHHHHHHHHccCCC
Q 003918 672 ----------EIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDR------------ARGIYVFASQFADP 729 (786)
Q Consensus 672 ----------~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~------------A~~~~~~al~~~~p 729 (786)
..+.++++.+++.+++.. .|++. .+|..++.++.+.|..++ |...|++++.. +|
T Consensus 194 ~~~~~~~~~~~~~~~~eel~~~~~ai~~-~P~~~--saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~-~~ 269 (567)
T 1dce_A 194 QPDSGPQGRLPENVLLKELELVQNAFFT-DPNDQ--SAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTV-GS 269 (567)
T ss_dssp CCCSSSCCSSCHHHHHHHHHHHHHHHHH-CSSCS--HHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECT-TB
T ss_pred cccccccccccHHHHHHHHHHHHHHHhh-CCCCc--cHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceec-cc
Confidence 125578999999999999 99954 489999999988888665 55667888775 44
Q ss_pred C
Q 003918 730 R 730 (786)
Q Consensus 730 ~ 730 (786)
.
T Consensus 270 ~ 270 (567)
T 1dce_A 270 R 270 (567)
T ss_dssp T
T ss_pred c
Confidence 4
No 138
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.20 E-value=2.4e-10 Score=99.83 Aligned_cols=97 Identities=8% Similarity=-0.014 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003918 462 SIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERI 541 (786)
Q Consensus 462 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 541 (786)
..|...|..+...|++++|+..|++++...| +++.+|..++.++...|++++|+..|+++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 64 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAP--------------------EDARGYSNRAAALAKLMSFPEAIADCNKA 64 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--------------------CChHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4445555555555555555555555555555 44555555555555555555555555555
Q ss_pred HhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 003918 542 LDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKI 578 (786)
Q Consensus 542 l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 578 (786)
++.+|+++.+|..+|.++...|++++|+..|+++++.
T Consensus 65 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 65 IEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence 5555555555555555555555555555555555554
No 139
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.19 E-value=3.4e-10 Score=109.12 Aligned_cols=126 Identities=13% Similarity=0.003 Sum_probs=68.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCCh
Q 003918 426 WVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNE 505 (786)
Q Consensus 426 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 505 (786)
+..+|..+...|++++|+..|++++ +| ++ .+|..++.++...|++++|+..|++++...|
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~------------- 68 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ--DP-HS----RICFNIGCMYTILKNMTEAEKAFTRSINRDK------------- 68 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS--SC-CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc--CC-Ch----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-------------
Confidence 3445555555555555555555553 22 22 4555555555555555555555555555555
Q ss_pred hHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCH----------------HHHHHHHHHHHHcccHHHHH
Q 003918 506 PVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATP----------------QIIINYALLLEEHKYFEDAF 569 (786)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~~~~~~~~~g~~~~A~ 569 (786)
.++.+|..+|.++...|++++|+..|+++++..|.++ .++..+|.++...|++++|+
T Consensus 69 -------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 141 (213)
T 1hh8_A 69 -------HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE 141 (213)
T ss_dssp -------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHH
T ss_pred -------cchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHH
Confidence 4455555555555555555555555555555444433 55555555555555555555
Q ss_pred HHHHHHHhh
Q 003918 570 RVYERGVKI 578 (786)
Q Consensus 570 ~~~~~al~~ 578 (786)
..|+++++.
T Consensus 142 ~~~~~al~~ 150 (213)
T 1hh8_A 142 EQLALATSM 150 (213)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHc
Confidence 555555554
No 140
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.18 E-value=5.7e-10 Score=96.68 Aligned_cols=118 Identities=14% Similarity=0.264 Sum_probs=95.0
Q ss_pred cHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhc
Q 003918 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAA 501 (786)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 501 (786)
....|..+|..+...|++++|+..|++++..+|.+. .+|..++.++...|++++|+.+|++++...|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--------- 74 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA----EAWYNLGNAYYKQGDYDEAIEYYQKALELDP--------- 74 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC---------
Confidence 367788888888888888888888888888888776 7778888888888888888888888887777
Q ss_pred cCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcc
Q 003918 502 DGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHK 563 (786)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 563 (786)
.+...|..++.++...|++++|...|+++++..|+++.++..++.++...|
T Consensus 75 -----------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 75 -----------NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp -----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred -----------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 567777788888888888888888888888888888888888877766544
No 141
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.18 E-value=2e-10 Score=105.65 Aligned_cols=113 Identities=12% Similarity=0.049 Sum_probs=88.3
Q ss_pred CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhh
Q 003918 421 KPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVA 500 (786)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 500 (786)
..+..|..+|..+...|++++|+..|++++..+|+++ .+|..++.++...|++++|+..|++++.+.|
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-------- 76 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANP----IYLSNRAAAYSASGQHEKAAEDAELATVVDP-------- 76 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--------
Confidence 4567777888888888888888888888888888776 7778888888888888888888888887777
Q ss_pred ccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHH
Q 003918 501 ADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYAL 557 (786)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 557 (786)
++..+|..++.++...|++++|+..|+++++.+|+++..|...+.
T Consensus 77 ------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 77 ------------KYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp ------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred ------------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 667777788888888888888888888888888877776655543
No 142
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.17 E-value=5.3e-10 Score=95.80 Aligned_cols=112 Identities=12% Similarity=0.092 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhcc
Q 003918 423 HTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAAD 502 (786)
Q Consensus 423 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 502 (786)
+..|..+|..+...|++++|+..|++++..+|.++ .+|..++.++...|++++|...+++++...|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---------- 69 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNH----VLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP---------- 69 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT----------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH----HHHHHHHHHHHhhccHHHHHHHHHHHHHhCc----------
Confidence 45566666666666666666666666666666665 6666666666666666666666666666666
Q ss_pred CChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHH
Q 003918 503 GNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALL 558 (786)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 558 (786)
.++.+|..++.++...|++++|...|+++++.+|+++.++..++.+
T Consensus 70 ----------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 70 ----------DWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp ----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred ----------ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 4556666666666666666666666666666666666666655544
No 143
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.16 E-value=1e-09 Score=105.69 Aligned_cols=134 Identities=11% Similarity=0.027 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q 003918 516 RLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKF 595 (786)
Q Consensus 516 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~ 595 (786)
..+...|..+...|++++|+..|++++ +.++.+|..+|.++...|++++|+..|++++.. +|.+..+|..++..+
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHH
Confidence 445677888889999999999999996 347899999999999999999999999999998 699999998876555
Q ss_pred HHHhCCCChHHHHHHHHHHHhhCCccC--------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 003918 596 VKRYGKTKLERARELFENAVETAPADA--------------VKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNH 657 (786)
Q Consensus 596 ~~~~~~~~~~~A~~~~~~al~~~p~~~--------------~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~ 657 (786)
. ..|++++|+..|+++++..|.+. ...++..+|.++...|++++|...|+++++..|.+
T Consensus 82 ~---~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 82 Y---QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp H---HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred H---HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 4 35889999999999999887632 34789999999999999999999999999999975
No 144
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.16 E-value=2.1e-10 Score=99.18 Aligned_cols=99 Identities=9% Similarity=-0.065 Sum_probs=64.6
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003918 464 WCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILD 543 (786)
Q Consensus 464 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 543 (786)
+...+..+.+.|++++|+..|++++...| +++.+|..+|.++...|++++|+..|+++++
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P--------------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 79 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEP--------------------EREEAWRSLGLTQAENEKDGLAIIALNHARM 79 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST--------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCC--------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45556666666677777777777766666 5666666667666667777777777777777
Q ss_pred hccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCCh
Q 003918 544 LRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHV 584 (786)
Q Consensus 544 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~ 584 (786)
.+|+++.+|..+|.++...|++++|+..|+++++. +|.+
T Consensus 80 l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~P~~ 118 (121)
T 1hxi_A 80 LDPKDIAVHAALAVSHTNEHNANAALASLRAWLLS--QPQY 118 (121)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCC
Confidence 77777777777777777777777777777776665 4543
No 145
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.14 E-value=3.9e-09 Score=105.14 Aligned_cols=168 Identities=10% Similarity=0.023 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhcc--CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCC----hHHHHH
Q 003918 516 RLWTFYVDLEESLGNLESTRAVYERILDLRI--ATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPH----VKDIWV 589 (786)
Q Consensus 516 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~----~~~~~~ 589 (786)
.....++.++...|++++|+.++.+++..+| .+.+++...+.++...|+++.|.+.++++.+. +|+ +..+..
T Consensus 101 ~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~ 178 (310)
T 3mv2_B 101 YELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMIL 178 (310)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHH
Confidence 3334556666666666666666666666554 55566666666666666666666666666554 341 122233
Q ss_pred HHHHHHH-HHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----------CCCc
Q 003918 590 TYLSKFV-KRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAV----------PNHE 658 (786)
Q Consensus 590 ~~~~~~~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~----------p~~~ 658 (786)
.++.... ...+.+++.+|..+|+++.+..|+..+..++.+ ++.+.|++++|...++.+++.. |+++
T Consensus 179 ~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~ 255 (310)
T 3mv2_B 179 NLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKP 255 (310)
T ss_dssp HHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHH
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCH
Confidence 3232211 111333566666666666655553001112222 4555666666666666555543 3332
Q ss_pred hhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCC
Q 003918 659 KLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPD 693 (786)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~ 693 (786)
... ...+.+....|+ +|.++++++... .|+
T Consensus 256 ~~L--aN~i~l~~~lgk--~a~~l~~qL~~~-~P~ 285 (310)
T 3mv2_B 256 TFL--ANQITLALMQGL--DTEDLTNQLVKL-DHE 285 (310)
T ss_dssp HHH--HHHHHHHHHTTC--TTHHHHHHHHHT-TCC
T ss_pred HHH--HHHHHHHHHhCh--HHHHHHHHHHHh-CCC
Confidence 222 222222223444 556666666666 565
No 146
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.14 E-value=1e-09 Score=95.96 Aligned_cols=121 Identities=16% Similarity=0.113 Sum_probs=102.5
Q ss_pred hcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHH
Q 003918 513 KSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYL 592 (786)
Q Consensus 513 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~ 592 (786)
.....+..++..+...|+++.|...|++++...|+++.++..+|.++...|++++|+..+++++.. +|.++.+|..++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~ 87 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHH
Confidence 456788888888889999999999999999999999999999999999999999999999999987 688888888765
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCH
Q 003918 593 SKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLA 640 (786)
Q Consensus 593 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~ 640 (786)
..+. ..|++++|+..|+++++..|+ +..++..++.++...|++
T Consensus 88 ~~~~---~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALS---SLNKHVEAVAYYKKALELDPD--NETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHH---HTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHHTTC
T ss_pred HHHH---HhCCHHHHHHHHHHHHhcCcc--chHHHHHHHHHHHHHhcC
Confidence 5443 347899999999999999888 677888888888877764
No 147
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.14 E-value=6.7e-10 Score=98.43 Aligned_cols=116 Identities=14% Similarity=0.070 Sum_probs=83.8
Q ss_pred CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhh
Q 003918 421 KPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVA 500 (786)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 500 (786)
.++..|..+|..+...|++++|+..|++++..+|+++ .+|..++.++...|++++|+..|++++...|
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-------- 74 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA----VYYTNRALCYLKMQQPEQALADCRRALELDG-------- 74 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcH----HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc--------
Confidence 4567777777777777777777777777777777776 7777777777777777777777777777777
Q ss_pred ccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccC-----CHHHHHHHHHHHH
Q 003918 501 ADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIA-----TPQIIINYALLLE 560 (786)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~~~~~~ 560 (786)
+++.+|..++.++...|++++|+..|+++++..|+ +..++..+..+..
T Consensus 75 ------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~ 127 (137)
T 3q49_B 75 ------------QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 127 (137)
T ss_dssp ------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred ------------hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777777777777777777766 4555555544443
No 148
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.13 E-value=7.5e-10 Score=97.31 Aligned_cols=120 Identities=10% Similarity=0.047 Sum_probs=99.5
Q ss_pred hcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHH
Q 003918 513 KSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYL 592 (786)
Q Consensus 513 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~ 592 (786)
.++..|..++..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++. +|.+..+|..++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL--EPTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCchHHHHHHH
Confidence 466788888888888999999999999999999989999999999999999999999999999987 688888888766
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCC
Q 003918 593 SKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGL 639 (786)
Q Consensus 593 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~ 639 (786)
..+. ..|++++|+..|+++++..|. +..++..++.++...|+
T Consensus 92 ~~~~---~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 92 AALE---AMKDYTKAMDVYQKALDLDSS--CKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHH---HTTCHHHHHHHHHHHHHHCGG--GTHHHHHHHHHHHHHTC
T ss_pred HHHH---HHhhHHHHHHHHHHHHHhCCC--chHHHHHHHHHHHHhcC
Confidence 5443 347899999999999998888 56788888888776653
No 149
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.13 E-value=3.5e-08 Score=98.28 Aligned_cols=181 Identities=11% Similarity=0.118 Sum_probs=79.1
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCC--ChHHHHHHHHHHHHHHhCCCChHHHHHHH
Q 003918 534 TRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYP--HVKDIWVTYLSKFVKRYGKTKLERARELF 611 (786)
Q Consensus 534 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 611 (786)
|+..|++.++..+.++..+..+|.++...|++++|++++.+++.. +| .+.++....+..+. ..|+.+.|++.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~--~~~~~~lea~~l~vqi~L---~~~r~d~A~k~l 159 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDN--DEAEGTTELLLLAIEVAL---LNNNVSTASTIF 159 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--SCSTTHHHHHHHHHHHHH---HTTCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CCCcCcHHHHHHHHHHHH---HCCCHHHHHHHH
Confidence 444444444443334444445555555555555555555555543 22 44444443333222 224555555555
Q ss_pred HHHHhhCC-----ccCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCc-hhhHHHHHHHHHHHhcChhHHHHHH
Q 003918 612 ENAVETAP-----ADAVKPLYLQYAKLEEDYG--LAKRAMKVYDQATKAVPNHE-KLGMYEIYIARAAEIFGVPKTREIY 683 (786)
Q Consensus 612 ~~al~~~p-----~~~~~~~~~~~a~~~~~~g--~~~~A~~~~~~~l~~~p~~~-~~~~~~~~~~~~~~~~~~~~A~~~~ 683 (786)
+++.+..| ++ +..+.+.-+++....| ++..|..+|+++.+..|+.. ...++. .+.+.|++++|...+
T Consensus 160 ~~~~~~~~d~~~~~d-~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln----~~~~~g~~~eAe~~L 234 (310)
T 3mv2_B 160 DNYTNAIEDTVSGDN-EMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN----LHLQQRNIAEAQGIV 234 (310)
T ss_dssp HHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH----HHHHHTCHHHHHHHH
T ss_pred HHHHhcCccccccch-HHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH----HHHHcCCHHHHHHHH
Confidence 55555555 11 1222222222233333 55555555555555444310 111111 233455555555555
Q ss_pred HHHHHhcC----------CChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCC
Q 003918 684 EQAIESGL----------PDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPR 730 (786)
Q Consensus 684 ~~al~~~~----------p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~ 730 (786)
+.+++. . |+ ++.+..+++.+....|+ .|.+++.++.+. .|+
T Consensus 235 ~~l~~~-~p~~~~k~~~~p~--~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~-~P~ 285 (310)
T 3mv2_B 235 ELLLSD-YYSVEQKENAVLY--KPTFLANQITLALMQGL--DTEDLTNQLVKL-DHE 285 (310)
T ss_dssp HHHHSH-HHHTTTCHHHHSS--HHHHHHHHHHHHHHTTC--TTHHHHHHHHHT-TCC
T ss_pred HHHHHh-cccccccccCCCC--CHHHHHHHHHHHHHhCh--HHHHHHHHHHHh-CCC
Confidence 544432 1 33 33344444444444444 455555555553 444
No 150
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.12 E-value=2.5e-10 Score=98.68 Aligned_cols=102 Identities=12% Similarity=0.013 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCC
Q 003918 425 LWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGN 504 (786)
Q Consensus 425 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 504 (786)
.++.+|..+...|++++|+..|++++..+|+++ .+|..++.++...|++++|+..|++++...|
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P------------ 82 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPERE----EAWRSLGLTQAENEKDGLAIIALNHARMLDP------------ 82 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------------
Confidence 467778888888888888888888888888887 8888888888888888888888888888888
Q ss_pred hhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHH
Q 003918 505 EPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQ 550 (786)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 550 (786)
+++.+|..++.++...|++++|+..|+++++.+|+++.
T Consensus 83 --------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 83 --------KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp --------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred --------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence 67788888888888888888888888888888887653
No 151
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.12 E-value=1.1e-10 Score=111.35 Aligned_cols=150 Identities=10% Similarity=0.003 Sum_probs=102.1
Q ss_pred HHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHH-Hh
Q 003918 433 YETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQM-KL 511 (786)
Q Consensus 433 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~-~~ 511 (786)
....|+++.|.+.++......+... ..+...|..+...|++++|+..|++++...|... .+... .... ..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~-~~~~~~~ 84 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEKVQSA----FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTE----EWDDQ-ILLDKKK 84 (198)
T ss_dssp --------CCCSGGGCCHHHHHHHH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCT----TCCCH-HHHHHHH
T ss_pred hhhhhhccccCchhhCCHHHHHHHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccc----ccchh-hHHHHHH
Confidence 4445666666666665544333333 6777788888888888888888888887766100 00000 0000 00
Q ss_pred hhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHH
Q 003918 512 HKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTY 591 (786)
Q Consensus 512 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~ 591 (786)
.-...+|..++.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++.. +|.+..++..+
T Consensus 85 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 162 (198)
T 2fbn_A 85 NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSY 162 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHH
Confidence 0013778888889999999999999999999999999999999999999999999999999999987 68888877765
Q ss_pred HH
Q 003918 592 LS 593 (786)
Q Consensus 592 ~~ 593 (786)
..
T Consensus 163 ~~ 164 (198)
T 2fbn_A 163 EL 164 (198)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 152
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.12 E-value=7.1e-10 Score=101.92 Aligned_cols=101 Identities=15% Similarity=0.125 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 003918 515 LRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSK 594 (786)
Q Consensus 515 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~ 594 (786)
...|..++.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|++++.. +|.+..+|..++..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555555555555555555555555554 34444444443322
Q ss_pred HHHHhCCCChHHHHHHHHHHHhhCCc
Q 003918 595 FVKRYGKTKLERARELFENAVETAPA 620 (786)
Q Consensus 595 ~~~~~~~~~~~~A~~~~~~al~~~p~ 620 (786)
+. ..|++++|+..|+++++..|+
T Consensus 89 ~~---~~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 89 RF---DMADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp HH---HTTCHHHHHHHHHHHHHHHSS
T ss_pred HH---HccCHHHHHHHHHHHHHhCCC
Confidence 22 224455555555555555444
No 153
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.11 E-value=1.5e-10 Score=110.31 Aligned_cols=124 Identities=16% Similarity=0.024 Sum_probs=78.0
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCH----------------HHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 003918 514 SLRLWTFYVDLEESLGNLESTRAVYERILDLRIATP----------------QIIINYALLLEEHKYFEDAFRVYERGVK 577 (786)
Q Consensus 514 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~~~~~~~~~g~~~~A~~~~~~al~ 577 (786)
....+...|..+...|++++|+..|++++...|.++ .+|..+|.++...|++++|+..+++++.
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 445566667777777777777777777777766665 5666666666666666666666666666
Q ss_pred hcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHH
Q 003918 578 IFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAM 644 (786)
Q Consensus 578 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~ 644 (786)
. +|.+..+|..++..+.. .|++++|+..|+++++..|+ +..++..++.++...|+.+++.
T Consensus 117 ~--~p~~~~~~~~lg~~~~~---~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 117 I--DKNNVKALYKLGVANMY---FGFLEEAKENLYKAASLNPN--NLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp H--STTCHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHHHHHHC--
T ss_pred h--CcccHHHHHHHHHHHHH---cccHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHH
Confidence 5 46666666654443332 25666666666666666666 4566666666665555555444
No 154
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.11 E-value=1.1e-09 Score=95.56 Aligned_cols=115 Identities=13% Similarity=0.145 Sum_probs=91.8
Q ss_pred CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhh
Q 003918 421 KPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVA 500 (786)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 500 (786)
+...++..+|..+.+.|++++|+..|+++++.+|+++ .+|..+|.++...|++++|+..|++++.+.|....
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~----~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~---- 77 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNI----TFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRA---- 77 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccch----
Confidence 3456788999999999999999999999999999998 89999999999999999999999999988762100
Q ss_pred ccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHH
Q 003918 501 ADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIII 553 (786)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 553 (786)
.......++..+|.++...|++++|+..|+++++..| +++...
T Consensus 78 ---------~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~-~~~~~~ 120 (127)
T 4gcn_A 78 ---------DYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR-DPELVK 120 (127)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC-CHHHHH
T ss_pred ---------hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CHHHHH
Confidence 0001235677777888888888888888888888766 344433
No 155
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.10 E-value=1.6e-09 Score=110.33 Aligned_cols=182 Identities=9% Similarity=0.011 Sum_probs=136.4
Q ss_pred CCCHHHHHHHHHhh--cCCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCCh--
Q 003918 382 PHNVEQWHRRVKIF--EGNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTV-- 457 (786)
Q Consensus 382 p~~~~~~~~~~~~~--~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-- 457 (786)
|.....+...+..+ .|++++|+..+.++++..+...........+..+|.++...|++++|+..|++++...+...
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 151 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence 44444555555544 38999999999999953222000011224456678888899999999999999998655432
Q ss_pred hhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcC---CchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHH
Q 003918 458 DHLASIWCEWAEMELRHKNFKGALELMRRATAE---PSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLEST 534 (786)
Q Consensus 458 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 534 (786)
.....++..+|.++...|++++|..+|++++.. .+... .....++..+|.++..+|++++|
T Consensus 152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~----------------~~~~~~~~nlg~~y~~~~~y~~A 215 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE----------------EFDVKVRYNHAKALYLDSRYEES 215 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH----------------HHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccc----------------cchHHHHHhHHHHHHHHhhHHHH
Confidence 223468899999999999999999999999943 22000 01236888999999999999999
Q ss_pred HHHHHHHHhhccC------CHHHHHHHHHHHHHcccHHHH-HHHHHHHHhhc
Q 003918 535 RAVYERILDLRIA------TPQIIINYALLLEEHKYFEDA-FRVYERGVKIF 579 (786)
Q Consensus 535 ~~~~~~al~~~p~------~~~~~~~~~~~~~~~g~~~~A-~~~~~~al~~~ 579 (786)
+..|+++++..+. ...++..+|.++...|++++| ...|++++.+.
T Consensus 216 l~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 216 LYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 9999999988543 267899999999999999999 78899998763
No 156
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.10 E-value=8.3e-09 Score=105.00 Aligned_cols=179 Identities=9% Similarity=0.043 Sum_probs=124.8
Q ss_pred cHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhh--HHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhh
Q 003918 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDH--LASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRV 499 (786)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 499 (786)
....+...+..+...|++++|...+++++...+..... ....+..++.++...|++++|+..|++++...+...
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~---- 149 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI---- 149 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSS----
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCC----
Confidence 34566677888899999999999999999987765322 223445677888889999999999999997644100
Q ss_pred hccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHh---hccCCH----HHHHHHHHHHHHcccHHHHHHHH
Q 003918 500 AADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILD---LRIATP----QIIINYALLLEEHKYFEDAFRVY 572 (786)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~----~~~~~~~~~~~~~g~~~~A~~~~ 572 (786)
. ......++..+|.++...|++++|...|+++++ ..|+++ .++.++|.++...|++++|+..+
T Consensus 150 ~----------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~ 219 (293)
T 2qfc_A 150 D----------VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQV 219 (293)
T ss_dssp C----------TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred c----------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHH
Confidence 0 001246788889999999999999999999994 455543 57888899999999999999999
Q ss_pred HHHHhhcCCCC----hHHHHHHHHHHHHHHhCCCChHHH-HHHHHHHHhh
Q 003918 573 ERGVKIFKYPH----VKDIWVTYLSKFVKRYGKTKLERA-RELFENAVET 617 (786)
Q Consensus 573 ~~al~~~~~p~----~~~~~~~~~~~~~~~~~~~~~~~A-~~~~~~al~~ 617 (786)
++++...+... ...++...+..+. ..|++++| ...|++++..
T Consensus 220 ~kal~~~~~~~~~~~~~~~~~~lg~~y~---~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 220 NKAIEISCRINSMALIGQLYYQRGECLR---KLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTBCSSHHHHHHHHHHHHH---HTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHH---HcCCcHHHHHHHHHHHHHH
Confidence 99888621110 1334443332222 23556666 5556665544
No 157
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.08 E-value=3.2e-09 Score=90.84 Aligned_cols=114 Identities=12% Similarity=0.139 Sum_probs=91.7
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHH
Q 003918 514 SLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLS 593 (786)
Q Consensus 514 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~ 593 (786)
.+..|...+..+...|++++|...|++++...|.++.++..+|.++...|++++|+..+++++.. +|.++.+|..++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--CcccHHHHHHHHH
Confidence 35677778888888889999999999998888888888888888888888888888888888887 6878888877654
Q ss_pred HHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHH
Q 003918 594 KFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLE 634 (786)
Q Consensus 594 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~ 634 (786)
.+. ..|++++|+..|+++++..|+ +..++..++.+.
T Consensus 81 ~~~---~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~ 116 (118)
T 1elw_A 81 ALE---FLNRFEEAKRTYEEGLKHEAN--NPQLKEGLQNME 116 (118)
T ss_dssp HHH---HTTCHHHHHHHHHHHHTTCTT--CHHHHHHHHHHH
T ss_pred HHH---HHhhHHHHHHHHHHHHHcCCC--CHHHHHHHHHhh
Confidence 443 347888888888888888887 567777776654
No 158
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.07 E-value=1.3e-09 Score=95.04 Aligned_cols=97 Identities=8% Similarity=0.080 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003918 462 SIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERI 541 (786)
Q Consensus 462 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 541 (786)
..+..+|..+.+.|++++|+..|++++.+.| +++.+|..+|.++..+|++++|+..|+++
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p--------------------~~~~~~~nlg~~~~~~~~~~~A~~~~~~a 68 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDP--------------------SNITFYNNKAAVYFEEKKFAECVQFCEKA 68 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------------------CCHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 4555666666666666666666666666666 55666666666666666666666666666
Q ss_pred HhhccCCH-------HHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 003918 542 LDLRIATP-------QIIINYALLLEEHKYFEDAFRVYERGVKI 578 (786)
Q Consensus 542 l~~~p~~~-------~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 578 (786)
++++|+++ .++..+|.++...|++++|++.|++++..
T Consensus 69 l~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 69 VEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66665542 35566666666666666666666666665
No 159
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=1.6e-09 Score=97.20 Aligned_cols=118 Identities=12% Similarity=0.060 Sum_probs=74.0
Q ss_pred CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhh
Q 003918 421 KPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVA 500 (786)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 500 (786)
.....|..+|..+...|++++|+..|++++..+|++. ....+|..++.++...|++++|+..+++++...|
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-------- 96 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQ-DQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-------- 96 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS--------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccch-HHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc--------
Confidence 4566667777777777777777777777777666541 1115566666666666666666666666666655
Q ss_pred ccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHH
Q 003918 501 ADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLL 559 (786)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 559 (786)
.+..+|..++.++...|++++|+..|+++++.+|+++.++..++.+.
T Consensus 97 ------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 97 ------------GDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp ------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred ------------cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 45556666666666666666666666666666666666655555443
No 160
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.06 E-value=5.2e-09 Score=90.50 Aligned_cols=117 Identities=14% Similarity=0.287 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 003918 515 LRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSK 594 (786)
Q Consensus 515 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~ 594 (786)
...|..++.++...|++++|+..|++++...|.++.++..++.++...|++++|+..+++++.. .|.+..+|..++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHH
Confidence 5677778888888888888888888888888888888888888888888888888888888886 57777777765544
Q ss_pred HHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcC
Q 003918 595 FVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYG 638 (786)
Q Consensus 595 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g 638 (786)
+. ..|++++|...|+++++..|. +..++..++.++...|
T Consensus 87 ~~---~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YY---KQGDYDEAIEYYQKALELDPN--NAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HH---HTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHC
T ss_pred HH---HhcCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHhcc
Confidence 43 347788888888888888887 5677777777765543
No 161
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.06 E-value=1.6e-09 Score=95.92 Aligned_cols=97 Identities=13% Similarity=0.035 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003918 462 SIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERI 541 (786)
Q Consensus 462 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 541 (786)
..|..++..+...|++++|+..|++++...| .++.+|..++.++...|++++|+..|+++
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~--------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 69 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITRNP--------------------LVAVYYTNRALCYLKMQQPEQALADCRRA 69 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc--------------------CcHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 5566666666666666666666666666666 45566666666666666666666666666
Q ss_pred HhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 003918 542 LDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKI 578 (786)
Q Consensus 542 l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 578 (786)
++.+|+++.+|..+|.++...|++++|+..|++++..
T Consensus 70 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 70 LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 6666666666666666666666666666666666665
No 162
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.06 E-value=1.8e-10 Score=125.13 Aligned_cols=147 Identities=12% Similarity=0.082 Sum_probs=93.1
Q ss_pred CCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChh-----------hHHHHHH
Q 003918 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVD-----------HLASIWC 465 (786)
Q Consensus 397 ~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-----------~~~~~~~ 465 (786)
+++++|+..|+.++. ..| .....|..+|..+.+.|++++|+..|++++..+|.+.. ....+|.
T Consensus 248 ~~~~~A~~~~~~~~~-~~~-----~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~ 321 (457)
T 1kt0_A 248 KSFEKAKESWEMDTK-EKL-----EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFL 321 (457)
T ss_dssp EEEECCCCGGGSCHH-HHH-----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHH-HHH-----HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHH
Confidence 345566666666553 233 46778999999999999999999999999999988731 0114555
Q ss_pred HHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhc
Q 003918 466 EWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLR 545 (786)
Q Consensus 466 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 545 (786)
.++.++.+.|++++|+..|++++.+.| ++..+|+.++.++..+|++++|+..|+++++++
T Consensus 322 nla~~~~~~g~~~~A~~~~~~al~~~p--------------------~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 322 NLAMCYLKLREYTKAVECCDKALGLDS--------------------ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHST--------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCC--------------------ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 556666666666666666666666555 455555666666666666666666666666666
Q ss_pred cCCHHHHHHHHHHHHHcccHHHHH
Q 003918 546 IATPQIIINYALLLEEHKYFEDAF 569 (786)
Q Consensus 546 p~~~~~~~~~~~~~~~~g~~~~A~ 569 (786)
|+++.++..++.++...|+++++.
T Consensus 382 P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 382 PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666665555555443
No 163
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.05 E-value=1.2e-09 Score=96.92 Aligned_cols=111 Identities=14% Similarity=0.062 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhccCC-------Chh-hHHHHHHHHHHHHHhccCHHHHHHHHHHHhcC----
Q 003918 423 HTLWVAFAKLYETYKDIANARVIFDKAVQVNYK-------TVD-HLASIWCEWAEMELRHKNFKGALELMRRATAE---- 490 (786)
Q Consensus 423 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-------~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---- 490 (786)
...+...|..+.+.|++++|+..|++++..+|+ +.. ....+|...+..+...|++++|+..|++++.+
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 457788999999999999999999999999998 321 01249999999999999999999999999988
Q ss_pred ---CchHHhhhhhccCChhHHHHhhhcHHHH----HHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHH
Q 003918 491 ---PSVEVRRRVAADGNEPVQMKLHKSLRLW----TFYVDLEESLGNLESTRAVYERILDLRIATPQIII 553 (786)
Q Consensus 491 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 553 (786)
.| ++...| +..|.++..+|++++|+..|+++++++|++..+..
T Consensus 91 ~e~~p--------------------d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~ 140 (159)
T 2hr2_A 91 GELNQ--------------------DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETP 140 (159)
T ss_dssp CCTTS--------------------THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCT
T ss_pred ccCCC--------------------chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 78 677788 88888888888888888888888888887654433
No 164
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.05 E-value=6.7e-10 Score=98.45 Aligned_cols=115 Identities=13% Similarity=0.037 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 003918 461 ASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYER 540 (786)
Q Consensus 461 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 540 (786)
...+...|..+.+.|++++|+..|++++...|... ..+ +. .....+..+|...+.++..+|++++|+..|++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~----~~~-a~---~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~k 82 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMP----PEE-AF---DHAGFDAFCHAGLAEALAGLRSFDEALHSADK 82 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSC----TTS-CC---CHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCc----chh-hh---hhccchHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 36778889999999999999999999999888200 000 00 00001344899999999999999999999999
Q ss_pred HHhh-------ccCCHHHH----HHHHHHHHHcccHHHHHHHHHHHHhhcCCCChH
Q 003918 541 ILDL-------RIATPQII----INYALLLEEHKYFEDAFRVYERGVKIFKYPHVK 585 (786)
Q Consensus 541 al~~-------~p~~~~~~----~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~ 585 (786)
+|++ +|+++.+| ++.|..+...|++++|+..|++++++ +|++.
T Consensus 83 AL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel--~p~d~ 136 (159)
T 2hr2_A 83 ALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM--IEERK 136 (159)
T ss_dssp HHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHCC
T ss_pred HHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc--CCCcH
Confidence 9999 99999999 99999999999999999999999998 46554
No 165
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.04 E-value=1.2e-09 Score=100.09 Aligned_cols=114 Identities=11% Similarity=0.062 Sum_probs=82.4
Q ss_pred cHHHHHHHHHHHHHcCChhHHHHHHHHHHhc--------cCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCch
Q 003918 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQV--------NYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSV 493 (786)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~ 493 (786)
.+..+...|..+.+.|++++|+..|.+++.. +|.+. . | ....|
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~----~-~-----------------------~~~~~- 60 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEP----E-W-----------------------VELDR- 60 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSH----H-H-----------------------HHHHH-
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHH----H-H-----------------------HHHHH-
Confidence 4667888899999999999999999999987 33321 0 0 01123
Q ss_pred HHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHH
Q 003918 494 EVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYE 573 (786)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~ 573 (786)
....+|..++.++...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+
T Consensus 61 -------------------~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~ 121 (162)
T 3rkv_A 61 -------------------KNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLK 121 (162)
T ss_dssp -------------------THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -------------------HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHH
Confidence 3456677777777777777777777777777777777777777777777777777777777
Q ss_pred HHHhhcCCCChH
Q 003918 574 RGVKIFKYPHVK 585 (786)
Q Consensus 574 ~al~~~~~p~~~ 585 (786)
+++.+ +|.+.
T Consensus 122 ~al~l--~p~~~ 131 (162)
T 3rkv_A 122 LLLRN--HPAAA 131 (162)
T ss_dssp HHHHH--CGGGH
T ss_pred HHHhc--CCCCH
Confidence 77776 57666
No 166
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=7e-09 Score=93.00 Aligned_cols=109 Identities=12% Similarity=0.069 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhc---HHHHHHHHHHHHHcCChHHHHHHH
Q 003918 462 SIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKS---LRLWTFYVDLEESLGNLESTRAVY 538 (786)
Q Consensus 462 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~A~~~~ 538 (786)
..|...+..+...|++++|+..|++++...| ++ ..+|..++.++...|++++|+..|
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~--------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 88 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLDA--------------------TPQDQAVLHRNRAACHLKLEDYDKAETEA 88 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCC--------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc--------------------cchHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 7888899999999999999999999999888 44 688888899999999999999999
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHH
Q 003918 539 ERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYL 592 (786)
Q Consensus 539 ~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~ 592 (786)
+++++..|+++.+|..+|.++...|++++|+..|++++.. +|.+..+|..+.
T Consensus 89 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 140 (148)
T 2dba_A 89 SKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL--EPKNKVFQEALR 140 (148)
T ss_dssp HHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CSSCHHHHHHHH
T ss_pred HHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHH
Confidence 9999999999999999999999999999999999999997 688888777643
No 167
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.03 E-value=2.3e-09 Score=93.67 Aligned_cols=117 Identities=13% Similarity=0.078 Sum_probs=103.1
Q ss_pred cHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhc
Q 003918 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAA 501 (786)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 501 (786)
.+..|..+|..+...|++++|+..|++++..+|.++ .++..++.++...|++++|+..+++++...|
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--------- 69 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNM----TYITNQAAVYFEKGDYNKCRELCEKAIEVGR--------- 69 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH----HHHHHHHHHHHHhccHHHHHHHHHHHHhhcc---------
Confidence 467889999999999999999999999999999987 8999999999999999999999999998766
Q ss_pred cCChhHHHHhhhc-------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcc
Q 003918 502 DGNEPVQMKLHKS-------LRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHK 563 (786)
Q Consensus 502 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g 563 (786)
.+ ..++..++.++...|++++|...|+++++..| ++..+..++.+....+
T Consensus 70 -----------~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 70 -----------ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp -----------HSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred -----------ccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 33 67888889999999999999999999999888 6888777777665543
No 168
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.03 E-value=5.8e-09 Score=106.14 Aligned_cols=138 Identities=10% Similarity=0.056 Sum_probs=102.2
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhccCCChhhH--HHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCC
Q 003918 427 VAFAKLYETYKDIANARVIFDKAVQVNYKTVDHL--ASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGN 504 (786)
Q Consensus 427 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 504 (786)
...+..+...|++++|...|++++...+..+... ...+..++.++...|++++|+..|++++...+..-
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~--------- 149 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI--------- 149 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCS---------
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccc---------
Confidence 3446677889999999999999999777665321 12334578888888999999999999997543100
Q ss_pred hhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhc-------cCCHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 003918 505 EPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLR-------IATPQIIINYALLLEEHKYFEDAFRVYERGVK 577 (786)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 577 (786)
.......++..+|.++...|++++|...|+++++.. +....++.++|.++...|++++|+..+++++.
T Consensus 150 -----~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~ 224 (293)
T 3u3w_A 150 -----DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp -----CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 000123568888999999999999999999999532 22235778888888888888888888888887
Q ss_pred h
Q 003918 578 I 578 (786)
Q Consensus 578 ~ 578 (786)
.
T Consensus 225 ~ 225 (293)
T 3u3w_A 225 I 225 (293)
T ss_dssp H
T ss_pred H
Confidence 5
No 169
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=99.02 E-value=2.4e-09 Score=90.89 Aligned_cols=110 Identities=25% Similarity=0.347 Sum_probs=93.9
Q ss_pred hhcCCCCHHHHHHHHHhhc--CCc------hhHHHHHHHHHhccCCCc--cCCCcHHHHHHHHHHHHHcCChhHHHHHHH
Q 003918 378 LRQNPHNVEQWHRRVKIFE--GNP------TKQILTYTEAVRTVDPMK--AVGKPHTLWVAFAKLYETYKDIANARVIFD 447 (786)
Q Consensus 378 l~~~p~~~~~~~~~~~~~~--~~~------~~a~~~~~~al~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 447 (786)
+-..|++++.|..++..++ |++ +..+.+|++|+..++|.+ .+.+.+.+|..||.+ ...++.++|+.+|+
T Consensus 6 ~~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~ 84 (161)
T 4h7y_A 6 IMMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQ 84 (161)
T ss_dssp ----CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHH
T ss_pred eeeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHH
Confidence 3568999999999999998 888 899999999998888854 234568999999977 56699999999999
Q ss_pred HHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCc
Q 003918 448 KAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPS 492 (786)
Q Consensus 448 ~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~ 492 (786)
.|++.+.. ++.+|..+|+++.++|+...|++++.+++...|
T Consensus 85 ~a~~~hKk----FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 85 MARANCKK----FAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HHHHHCTT----BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhHH----HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 99987333 269999999999999999999999999999888
No 170
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.02 E-value=5.6e-09 Score=106.25 Aligned_cols=170 Identities=8% Similarity=0.002 Sum_probs=129.2
Q ss_pred cCCchhHHHHHHHHHhccCCCccCCCc-HHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChh--hHHHHHHHHHHHHH
Q 003918 396 EGNPTKQILTYTEAVRTVDPMKAVGKP-HTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVD--HLASIWCEWAEMEL 472 (786)
Q Consensus 396 ~~~~~~a~~~~~~al~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~~~~~~a~~~~ 472 (786)
.|++++|...+++++. ..+....... ...+..+|.++...|++++|+..|++++...+.... ....++..+|.++.
T Consensus 88 ~~~y~~a~~~~~~~l~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~ 166 (293)
T 3u3w_A 88 QKRYKEIYNKVWNELK-KEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA 166 (293)
T ss_dssp TTCHHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHhc-cccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence 4899999999999985 3331000000 123345788888899999999999999986544322 12357899999999
Q ss_pred hccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCC----
Q 003918 473 RHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIAT---- 548 (786)
Q Consensus 473 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---- 548 (786)
..|++++|..+|++++...... .........++..+|.++..+|++++|+..|+++++..+..
T Consensus 167 ~~g~~~~A~~~~~~al~~~~~~-------------~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~ 233 (293)
T 3u3w_A 167 ENGYLKKGIDLFEQILKQLEAL-------------HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHS-------------SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCT
T ss_pred HcCCHHHHHHHHHHHHHHHHhc-------------ccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHH
Confidence 9999999999999999421100 00000345688999999999999999999999999986544
Q ss_pred --HHHHHHHHHHHHHccc-HHHHHHHHHHHHhhc
Q 003918 549 --PQIIINYALLLEEHKY-FEDAFRVYERGVKIF 579 (786)
Q Consensus 549 --~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~ 579 (786)
+.++..+|.++...|+ +++|+..|++++.++
T Consensus 234 ~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp THHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 7899999999999994 699999999999863
No 171
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=99.01 E-value=6.7e-09 Score=88.15 Aligned_cols=115 Identities=20% Similarity=0.228 Sum_probs=93.2
Q ss_pred hhCCCChHhHHHHHHHHH-cCCh------hhHHHHHHHHHHhCCCCH--------HHHHHHHHHHHHhccCCCCCchhHH
Q 003918 21 LRNPFSLKLWWRYLVAKR-EAPF------KKRFVIYERALKALPGSY--------KLWHAYLIERLSIVKNLPITHPEYE 85 (786)
Q Consensus 21 ~~~p~~~~~w~~~~~~~~-~~~~------~~~~~~~~~al~~~P~~~--------~~w~~~~~~~~~~~~~~~~~~~~~~ 85 (786)
--+|.|++.|..|+.... .++. ++.+.+|+||+..-|-+. .+|+.|+.+.. . ++.+
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~e-i--------~D~d 77 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKA-I--------QEPD 77 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHH-H--------HCGG
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHH-h--------cCHH
Confidence 347999999999988654 5666 899999999999998643 56788887732 2 7899
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHH
Q 003918 86 TLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLR 146 (786)
Q Consensus 86 ~A~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~w~~~~~ 146 (786)
+|+.+|+.|+..+..-..+|+.+|+|+.++|++.+|++++.+|+...|.. ..+....++
T Consensus 78 ~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~--~~~le~a~~ 136 (161)
T 4h7y_A 78 DARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP--LEMLEIALR 136 (161)
T ss_dssp GCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC--HHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc--HHHHHHHHH
Confidence 99999999999888889999999999999999999999999999999965 444444333
No 172
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.99 E-value=5.8e-09 Score=95.51 Aligned_cols=136 Identities=12% Similarity=0.040 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 003918 461 ASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYER 540 (786)
Q Consensus 461 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 540 (786)
...+...|..+.+.|++++|+..|.+++...+. .. ...+.... .
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~--------------------~~-----------~~~~~~~~-----~ 54 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDT--------------------LI-----------LREKPGEP-----E 54 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------------------HH-----------HTSCTTSH-----H
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--------------------hc-----------ccCCCCHH-----H
Confidence 477888999999999999999999999987441 00 00011100 0
Q ss_pred HHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCc
Q 003918 541 ILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPA 620 (786)
Q Consensus 541 al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 620 (786)
....+|.++.+|.++|.++...|++++|+..+++++.. +|.++.+|...+..+. ..|++++|+..|+++++.+|+
T Consensus 55 ~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~~g~~~~---~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 55 WVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR--EETNEKALFRRAKARI---AAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc--CCcchHHHHHHHHHHH---HHhcHHHHHHHHHHHHhcCCC
Confidence 13456788999999999999999999999999999998 7999999998765554 458999999999999999999
Q ss_pred cCcH-HHHHHHHHHHHHcCC
Q 003918 621 DAVK-PLYLQYAKLEEDYGL 639 (786)
Q Consensus 621 ~~~~-~~~~~~a~~~~~~g~ 639 (786)
+. .+...+..+....+.
T Consensus 130 --~~~~~~~~l~~~~~~~~~ 147 (162)
T 3rkv_A 130 --AASVVAREMKIVTERRAE 147 (162)
T ss_dssp --GHHHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHHHHH
Confidence 55 667777777665443
No 173
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.99 E-value=4.1e-10 Score=122.25 Aligned_cols=133 Identities=13% Similarity=0.087 Sum_probs=98.8
Q ss_pred hcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCC---------------HHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 003918 513 KSLRLWTFYVDLEESLGNLESTRAVYERILDLRIAT---------------PQIIINYALLLEEHKYFEDAFRVYERGVK 577 (786)
Q Consensus 513 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 577 (786)
.....|...+..+...|++++|+..|+++++.+|.+ ..+|.++|.++.+.|++++|+..|++++.
T Consensus 266 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 566778888888888899999999999999988888 57888888888888888888888888888
Q ss_pred hcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHh
Q 003918 578 IFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAM-KVYDQATK 652 (786)
Q Consensus 578 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~-~~~~~~l~ 652 (786)
+ +|.+..+|...+..+. ..|++++|+..|+++++..|+ +..++..++.++...|+++++. ..|.+++.
T Consensus 346 ~--~p~~~~a~~~~g~a~~---~~g~~~~A~~~~~~al~l~P~--~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 346 L--DSANEKGLYRRGEAQL---LMNEFESAKGDFEKVLEVNPQ--NKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp H--STTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHTTC------CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred c--CCccHHHHHHHHHHHH---HccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7 6778777777654443 347788888888888888887 5567777888887777777655 34444443
No 174
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.99 E-value=2.1e-09 Score=91.05 Aligned_cols=62 Identities=13% Similarity=0.044 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhccC--CHHHHHHHHHHHHHc-ccHHHHHHHHHHHHh
Q 003918 516 RLWTFYVDLEESLGNLESTRAVYERILDLRIA--TPQIIINYALLLEEH-KYFEDAFRVYERGVK 577 (786)
Q Consensus 516 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~-g~~~~A~~~~~~al~ 577 (786)
.+|..++.++...|++++|+..|+++++..|. ++.+|..+|.++... |++++|++.+++++.
T Consensus 41 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 41 KYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 33333444444444444444444444444444 444444444444444 444444444444444
No 175
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.98 E-value=1.7e-08 Score=96.03 Aligned_cols=161 Identities=11% Similarity=0.082 Sum_probs=111.1
Q ss_pred HhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh------c
Q 003918 472 LRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDL------R 545 (786)
Q Consensus 472 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~------~ 545 (786)
...|++++|.+.++.....++ ....++..++.++...|++++|+..|++++.. .
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~--------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 62 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPA--------------------TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDH 62 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTT--------------------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCH
T ss_pred cccccHHHHHHHHHHhcCChH--------------------HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCc
Confidence 357889999886655555554 45678888899999999999999999999984 4
Q ss_pred cCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcC-CCCh----HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCc
Q 003918 546 IATPQIIINYALLLEEHKYFEDAFRVYERGVKIFK-YPHV----KDIWVTYLSKFVKRYGKTKLERARELFENAVETAPA 620 (786)
Q Consensus 546 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~-~p~~----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 620 (786)
|....++..+|.++...|++++|+..+++++...+ .+++ ..++...+..+. ..|++++|+..+++++...+.
T Consensus 63 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~---~~g~~~~A~~~~~~al~~~~~ 139 (203)
T 3gw4_A 63 TAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVAL---HFGDLAGARQEYEKSLVYAQQ 139 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHH---HhCCHHHHHHHHHHHHHHHHh
Confidence 44566788889999999999999999999888731 1212 223443332222 237788888888888865332
Q ss_pred cCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 003918 621 DAV----KPLYLQYAKLEEDYGLAKRAMKVYDQATKAVP 655 (786)
Q Consensus 621 ~~~----~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p 655 (786)
..+ ..++..+|.++...|++++|...++++++...
T Consensus 140 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 140 ADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 111 23456778888888888888888888776543
No 176
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.97 E-value=2.5e-10 Score=124.43 Aligned_cols=126 Identities=20% Similarity=0.189 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccC
Q 003918 424 TLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADG 503 (786)
Q Consensus 424 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 503 (786)
..|..+|..+...|++++|+..|+++++.+|++. .+|..++.++.+.|++++|+..|+++++..|
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p----------- 71 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNA----IYYGNRSLAYLRTECYGYALGDATRAIELDK----------- 71 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-----------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH----HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-----------
Confidence 3445666778889999999999999999999997 9999999999999999999999999999999
Q ss_pred ChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHH--HHHcccHHHHHHHHH
Q 003918 504 NEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALL--LEEHKYFEDAFRVYE 573 (786)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~--~~~~g~~~~A~~~~~ 573 (786)
++..+|..++.++..+|++++|+..|+++++.+|+++.++..++.+ +...|++++|++.++
T Consensus 72 ---------~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 72 ---------KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp ---------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred ---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7889999999999999999999999999999999999999999888 888899999999999
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.96 E-value=1.5e-08 Score=88.55 Aligned_cols=106 Identities=9% Similarity=-0.059 Sum_probs=53.0
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChh
Q 003918 427 VAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEP 506 (786)
Q Consensus 427 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 506 (786)
+..|..+...|++++|+..|++++..+|+++.. ..++..++.++...|++++|+..|++++...|
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p-------------- 70 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYT-PNALYWLGESYYATRNFQLAEAQFRDLVSRYP-------------- 70 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCccc-HHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC--------------
Confidence 444555555555555555555555555544311 13444455555555555555555555554444
Q ss_pred HHHHhhhc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHH
Q 003918 507 VQMKLHKS---LRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIII 553 (786)
Q Consensus 507 ~~~~~~~~---~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 553 (786)
++ +.++..++.++...|++++|+..|++++...|+++.+..
T Consensus 71 ------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 114 (129)
T 2xev_A 71 ------THDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARV 114 (129)
T ss_dssp ------TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred ------CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHH
Confidence 23 344444455555555555555555555555555444433
No 178
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.96 E-value=4.4e-09 Score=88.98 Aligned_cols=109 Identities=11% Similarity=0.101 Sum_probs=99.4
Q ss_pred hCCCCHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhCCC
Q 003918 55 ALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPV 134 (786)
Q Consensus 55 ~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 134 (786)
.+|++...|..++...... |++++|...|+++++..|.++.+|..++..+...|++++|...|++++..+|.
T Consensus 1 l~p~~~~~~~~~~~~~~~~--------~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 72 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDA--------GNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED 72 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSS--------CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred CCCCcHHHHHHHHHHHHHh--------hhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 3688999999999988765 89999999999999999999999999999999999999999999999999997
Q ss_pred CcchhhHHHHHHHHHhc-CCChHHHHHHHHHHHccCCCC
Q 003918 135 TQHDRIWEIYLRFVEQE-GIPIETSLRVYRRYLKYDPSH 172 (786)
Q Consensus 135 ~~~~~~w~~~~~~~~~~-~~~~~~A~~~~~~~l~~~p~~ 172 (786)
.....+|..++.++... |++ ++|++.++++++..|.+
T Consensus 73 ~~~~~~~~~l~~~~~~~~~~~-~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 73 EYNKDVWAAKADALRYIEGKE-VEAEIAEARAKLEHHHH 110 (112)
T ss_dssp TTCHHHHHHHHHHHTTCSSCS-HHHHHHHHHHGGGCCCC
T ss_pred cchHHHHHHHHHHHHHHhCCH-HHHHHHHHHHhhcccCC
Confidence 11378899999999999 999 99999999999999875
No 179
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.93 E-value=1.7e-08 Score=96.10 Aligned_cols=158 Identities=12% Similarity=0.028 Sum_probs=99.3
Q ss_pred HcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcC------CchHHhhhhhccCChhHH
Q 003918 435 TYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAE------PSVEVRRRVAADGNEPVQ 508 (786)
Q Consensus 435 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~------~~~~~~~~~~~~~~~~~~ 508 (786)
..|++++|+..++.... +|.. ...++..++.++...|++++|...+++++.. ++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------------- 63 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPAT---ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHT---------------- 63 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTT---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHH----------------
T ss_pred ccccHHHHHHHHHHhcC-ChHH---HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcH----------------
Confidence 45777777775544433 3322 2367777777777778888888888777762 22
Q ss_pred HHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh---ccCC----HHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCC
Q 003918 509 MKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDL---RIAT----PQIIINYALLLEEHKYFEDAFRVYERGVKIFKY 581 (786)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~----~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~ 581 (786)
....++..++.++...|++++|...|+++++. .+++ ..++..+|.++...|++++|+..+++++...+.
T Consensus 64 ----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 139 (203)
T 3gw4_A 64 ----AEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQ 139 (203)
T ss_dssp ----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 34566777777777888888888888888776 3323 345777788888888888888888888765322
Q ss_pred CChHH----HHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCC
Q 003918 582 PHVKD----IWVTYLSKFVKRYGKTKLERARELFENAVETAP 619 (786)
Q Consensus 582 p~~~~----~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 619 (786)
..+.. ++..++. .+. ..|++++|+..++++++...
T Consensus 140 ~~~~~~~~~~~~~la~-~~~--~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 140 ADDQVAIACAFRGLGD-LAQ--QEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp TTCHHHHHHHHHHHHH-HHH--HTTCHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHH-HHH--HCcCHHHHHHHHHHHHHHHH
Confidence 22221 1222222 221 34778888888888877643
No 180
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.93 E-value=2.8e-09 Score=94.23 Aligned_cols=95 Identities=11% Similarity=0.042 Sum_probs=81.8
Q ss_pred HhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCCh----------HHHHHHHHHH
Q 003918 472 LRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNL----------ESTRAVYERI 541 (786)
Q Consensus 472 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~----------~~A~~~~~~a 541 (786)
.+.+.+++|++.+++++...| +++..|..++.++...+++ ++|+..|+++
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P--------------------~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~A 72 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNP--------------------LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEA 72 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT--------------------TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCC--------------------CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHH
Confidence 356789999999999999999 8899999999998888765 5999999999
Q ss_pred HhhccCCHHHHHHHHHHHHHcc-----------cHHHHHHHHHHHHhhcCCCChHHHH
Q 003918 542 LDLRIATPQIIINYALLLEEHK-----------YFEDAFRVYERGVKIFKYPHVKDIW 588 (786)
Q Consensus 542 l~~~p~~~~~~~~~~~~~~~~g-----------~~~~A~~~~~~al~~~~~p~~~~~~ 588 (786)
++++|+++.+|+++|.+|...| ++++|++.|++|+++ +|++...+
T Consensus 73 L~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~ 128 (158)
T 1zu2_A 73 LLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYL 128 (158)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred HHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHH
Confidence 9999999999999999999875 677888888888877 67765433
No 181
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.93 E-value=9.8e-09 Score=107.72 Aligned_cols=126 Identities=10% Similarity=0.012 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCCh------------hhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcC
Q 003918 423 HTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTV------------DHLASIWCEWAEMELRHKNFKGALELMRRATAE 490 (786)
Q Consensus 423 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~------------~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 490 (786)
...|..+|..+.+.|++++|+..|++++...+..+ .....+|..++.++.+.|++++|+..+++++..
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 45688899999999999999999999998433210 001144555555555555555555555555555
Q ss_pred CchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHH
Q 003918 491 PSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDA 568 (786)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A 568 (786)
.| ++..+|..++.++..+|++++|+..|+++++.+|+++.++..++.++...++.+++
T Consensus 303 ~p--------------------~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 303 DP--------------------SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp CT--------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred Cc--------------------hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 55 44455555555555555555555555555555555555555555555444444433
No 182
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.92 E-value=1.1e-09 Score=113.82 Aligned_cols=155 Identities=8% Similarity=0.035 Sum_probs=94.6
Q ss_pred cHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhc
Q 003918 422 PHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAA 501 (786)
Q Consensus 422 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 501 (786)
....|..+|..+...|++++|+..|++++...|++. . +...|+++++...+.
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~-------~~~~~~~~~~~~~l~---------------- 229 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----M-------FQLYGKYQDMALAVK---------------- 229 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----H-------HTCCHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----h-------hhhcccHHHHHHHHH----------------
Confidence 456788899999999999999999999999988542 1 122344444432221
Q ss_pred cCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCC
Q 003918 502 DGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKY 581 (786)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~ 581 (786)
..+|..++.++...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|++++++ +
T Consensus 230 -------------~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~ 294 (338)
T 2if4_A 230 -------------NPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--A 294 (338)
T ss_dssp -------------THHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----
T ss_pred -------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--C
Confidence 1467788999999999999999999999999999999999999999999999999999999997 6
Q ss_pred CChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCcc
Q 003918 582 PHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPAD 621 (786)
Q Consensus 582 p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 621 (786)
|.+..++..+.. +... ..+..++++..|.+++...|.+
T Consensus 295 p~~~~a~~~L~~-l~~~-~~~~~~~a~~~~~~~l~~~p~~ 332 (338)
T 2if4_A 295 PDDKAIRRELRA-LAEQ-EKALYQKQKEMYKGIFKGKDEG 332 (338)
T ss_dssp ----------------------------------------
T ss_pred CCCHHHHHHHHH-HHHH-HHHHHHHHHHHHHHhhCCCCCC
Confidence 888888876543 3222 3467889999999999998874
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.92 E-value=2.4e-09 Score=91.88 Aligned_cols=93 Identities=13% Similarity=0.050 Sum_probs=59.0
Q ss_pred ccCHHHHHHHHHHHhcC---CchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHH
Q 003918 474 HKNFKGALELMRRATAE---PSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQ 550 (786)
Q Consensus 474 ~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 550 (786)
.|++++|+..|++++.. .| +++.+|..++.++...|++++|+..|+++++.+|+++.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p--------------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 62 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGK--------------------DLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA 62 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHH--------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCc--------------------cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH
Confidence 45666666666666666 34 45566666666666677777777777777777777777
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHH
Q 003918 551 IIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIW 588 (786)
Q Consensus 551 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~ 588 (786)
++..+|.++...|++++|+..+++++.. .|.++.+.
T Consensus 63 ~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 98 (117)
T 3k9i_A 63 LRVFYAMVLYNLGRYEQGVELLLKIIAE--TSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHH
Confidence 7777777777777777777777777665 35555443
No 184
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.92 E-value=2.2e-08 Score=87.43 Aligned_cols=98 Identities=12% Similarity=0.042 Sum_probs=61.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhccCCH---HHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCCh---HHHHHHH
Q 003918 518 WTFYVDLEESLGNLESTRAVYERILDLRIATP---QIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHV---KDIWVTY 591 (786)
Q Consensus 518 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~---~~~~~~~ 591 (786)
++..+..+...|++++|+..|+++++..|+++ .++..+|.++...|++++|+..|++++.. +|++ +.++..+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~l 82 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--YPTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--CCCCcccHHHHHHH
Confidence 34456666667777777777777777766666 56666777777777777777777776665 4555 4555544
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHhhCCc
Q 003918 592 LSKFVKRYGKTKLERARELFENAVETAPA 620 (786)
Q Consensus 592 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 620 (786)
+..+. ..|++++|+..|+++++..|+
T Consensus 83 a~~~~---~~g~~~~A~~~~~~~~~~~p~ 108 (129)
T 2xev_A 83 GLSQY---GEGKNTEAQQTLQQVATQYPG 108 (129)
T ss_dssp HHHHH---HTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHH---HcCCHHHHHHHHHHHHHHCCC
Confidence 33332 235666666666666666665
No 185
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.92 E-value=1.8e-09 Score=112.15 Aligned_cols=155 Identities=11% Similarity=0.058 Sum_probs=68.8
Q ss_pred hcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHH
Q 003918 513 KSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYL 592 (786)
Q Consensus 513 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~ 592 (786)
.....+...+..+...|++++|+..|++++...|++.. +...|+++++...+. ..+|..++
T Consensus 177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~~~~~~~~~l~-----------~~~~~nla 237 (338)
T 2if4_A 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMALAVK-----------NPCHLNIA 237 (338)
T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCHHHHHHHHHHH-----------THHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcccHHHHHHHHH-----------HHHHHHHH
Confidence 35567778888888899999999999999998887652 112222222222111 01333333
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHH
Q 003918 593 SKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAE 672 (786)
Q Consensus 593 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~ 672 (786)
..+. ..|++++|+..|+++++.+|+ +..+|+.+|.++...|++++|+..|+++++..|.++........+.. ..
T Consensus 238 ~~~~---~~g~~~~A~~~~~~al~~~p~--~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~-~~ 311 (338)
T 2if4_A 238 ACLI---KLKRYDEAIGHCNIVLTEEEK--NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAE-QE 311 (338)
T ss_dssp HHHH---TTTCCHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------
T ss_pred HHHH---HcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HH
Confidence 2222 345566666666666666665 45556666666666666666666666666666654444333332221 12
Q ss_pred hcChhHHHHHHHHHHHhcCCC
Q 003918 673 IFGVPKTREIYEQAIESGLPD 693 (786)
Q Consensus 673 ~~~~~~A~~~~~~al~~~~p~ 693 (786)
.+..++++..|.+++.. .|.
T Consensus 312 ~~~~~~a~~~~~~~l~~-~p~ 331 (338)
T 2if4_A 312 KALYQKQKEMYKGIFKG-KDE 331 (338)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHhhCC-CCC
Confidence 34455556666666555 444
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.90 E-value=3.5e-09 Score=90.91 Aligned_cols=100 Identities=15% Similarity=0.192 Sum_probs=82.2
Q ss_pred HcCChHHHHHHHHHHHhh---ccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCC
Q 003918 527 SLGNLESTRAVYERILDL---RIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTK 603 (786)
Q Consensus 527 ~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~ 603 (786)
..|++++|+..|+++++. +|+++.+|..+|.++...|++++|+..|+++++. +|+++.++..++..+.. .|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~---~g~ 76 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYN---LGR 76 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH---HTC
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHH---cCC
Confidence 368899999999999999 6989999999999999999999999999999998 79999999987665543 388
Q ss_pred hHHHHHHHHHHHhhCCccCcHHHHHHHHHH
Q 003918 604 LERARELFENAVETAPADAVKPLYLQYAKL 633 (786)
Q Consensus 604 ~~~A~~~~~~al~~~p~~~~~~~~~~~a~~ 633 (786)
+++|+..|+++++..|+ +..+......+
T Consensus 77 ~~~A~~~~~~al~~~p~--~~~~~~~~~ai 104 (117)
T 3k9i_A 77 YEQGVELLLKIIAETSD--DETIQSYKQAI 104 (117)
T ss_dssp HHHHHHHHHHHHHHHCC--CHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHhCCC--cHHHHHHHHHH
Confidence 99999999999999998 44544443333
No 187
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.89 E-value=2.8e-08 Score=90.31 Aligned_cols=143 Identities=7% Similarity=-0.016 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhccCC--ChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhh
Q 003918 423 HTLWVAFAKLYETYKDIANARVIFDKAVQVNYK--TVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVA 500 (786)
Q Consensus 423 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 500 (786)
..++..+|..+...|++++|+..|++++...+. +......++..++.++...|++++|...+++++...+..-
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~----- 83 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK----- 83 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC-----
Confidence 567888999999999999999999999987543 2223345788889999999999999999999986544100
Q ss_pred ccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccC------CHHHHHHHHHHHHHcccHHHHHHHHHH
Q 003918 501 ADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIA------TPQIIINYALLLEEHKYFEDAFRVYER 574 (786)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~g~~~~A~~~~~~ 574 (786)
.......++..++.++...|++++|...|+++++..+. .+.++..++.++...|++++|+..+++
T Consensus 84 ---------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 154 (164)
T 3ro3_A 84 ---------DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 154 (164)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ---------CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 00023467778888899999999999999999887432 245677888899999999999999999
Q ss_pred HHhhc
Q 003918 575 GVKIF 579 (786)
Q Consensus 575 al~~~ 579 (786)
+++..
T Consensus 155 a~~~~ 159 (164)
T 3ro3_A 155 HLEIS 159 (164)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88863
No 188
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.87 E-value=1e-09 Score=119.69 Aligned_cols=136 Identities=12% Similarity=0.056 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 003918 515 LRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSK 594 (786)
Q Consensus 515 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~ 594 (786)
...+..+|..+...|++++|+..|+++++.+|+++.+|..+|.++...|++++|++.++++++. +|.+..+|..++..
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~ 83 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 83 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 3445556667778999999999999999999999999999999999999999999999999997 79999999987655
Q ss_pred HHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHhcCCCC
Q 003918 595 FVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKL--EEDYGLAKRAMKVYD-----------QATKAVPNH 657 (786)
Q Consensus 595 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~--~~~~g~~~~A~~~~~-----------~~l~~~p~~ 657 (786)
+.. .|++++|...|+++++..|+ +..++..++.+ +...|++++|++.++ +++...|..
T Consensus 84 ~~~---~g~~~eA~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 84 NMA---LGKFRAALRDYETVVKVKPH--DKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp HHH---HTCHHHHHHHHHHHHHHSTT--CTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred HHH---cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 543 38899999999999999998 45677777777 778899999999999 888777754
No 189
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.86 E-value=5.4e-09 Score=92.36 Aligned_cols=92 Identities=11% Similarity=0.071 Sum_probs=82.8
Q ss_pred HcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccC----------HHHHHHHHHHHhcCCchHHhhhhhccCC
Q 003918 435 TYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKN----------FKGALELMRRATAEPSVEVRRRVAADGN 504 (786)
Q Consensus 435 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~ 504 (786)
+.+.+++|++.|++++..+|+++ ..|..++.++...++ +++|+..|++++++.|
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~a----ea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP------------ 77 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDA----DNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP------------ 77 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT------------
T ss_pred HHhHHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCc------------
Confidence 45668999999999999999998 899999998888776 4699999999999999
Q ss_pred hhHHHHhhhcHHHHHHHHHHHHHcC-----------ChHHHHHHHHHHHhhccCCHH
Q 003918 505 EPVQMKLHKSLRLWTFYVDLEESLG-----------NLESTRAVYERILDLRIATPQ 550 (786)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~ 550 (786)
+...+|+.+|.++..+| ++++|+.+|++|++++|+++.
T Consensus 78 --------~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 78 --------KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp --------TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred --------CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence 78899999999998874 899999999999999999853
No 190
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.85 E-value=4.1e-08 Score=85.56 Aligned_cols=97 Identities=13% Similarity=0.164 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003918 462 SIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERI 541 (786)
Q Consensus 462 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 541 (786)
..|..++..+...|++++|+..|++++...| .++.++..++.++...|++++|...|+++
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 64 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDP--------------------TNMTYITNQAAVYFEKGDYNKCRELCEKA 64 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--------------------ccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4455555555555566666666665555555 44555555555555555666666666666
Q ss_pred HhhccCC-------HHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 003918 542 LDLRIAT-------PQIIINYALLLEEHKYFEDAFRVYERGVKI 578 (786)
Q Consensus 542 l~~~p~~-------~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 578 (786)
+...|.+ +.++..+|.++...|++++|+..|++++..
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 65 IEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 5555544 555555555555555555555555555554
No 191
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.84 E-value=3.6e-07 Score=99.56 Aligned_cols=185 Identities=10% Similarity=0.040 Sum_probs=98.8
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHhhCCccCcH
Q 003918 552 IINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYG-------KTKLERARELFENAVETAPADAVK 624 (786)
Q Consensus 552 ~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~-------~~~~~~A~~~~~~al~~~p~~~~~ 624 (786)
+......+.+.|++++|+++|+++.... .+.+...|..++..+. ..+ .+.++.|.++|+++.+..-. ++.
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~G-v~pd~~tyn~Li~~c~-~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~-Pd~ 105 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNG-VQLSQYHYNVLLYVCS-LAEAATESSPNPGLSRGFDIFKQMIVDKVV-PNE 105 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHT-CCCCHHHHHHHHHHHT-TCCCCSSSSCCHHHHHHHHHHHHHHHTTCC-CCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHH-hCCchhhhhhcchHHHHHHHHHHHHHhCCC-CCH
Confidence 4455566667777777777777776652 3344455555443222 101 01245566666666554211 134
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChhHHHHHHHHH
Q 003918 625 PLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYA 704 (786)
Q Consensus 625 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~ 704 (786)
..|..+...+.+.|+.++|..+|+++.+..- .|+...+...+..+.+.|+.++|.++|+.+.+.|... +...|..+.
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~-~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P--d~~ty~~Li 182 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGI-QPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP--EEPELAALL 182 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC--CHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC--CHHHHHHHH
Confidence 5566666666666666666666666554321 2344555555555556666666666666665553222 133555566
Q ss_pred HHHHHcCChHHHHHHHHHHHccC-CCCCCHHHHHHHHHHHH
Q 003918 705 ELEKSLGEIDRARGIYVFASQFA-DPRSDTEFWNRWHEFEV 744 (786)
Q Consensus 705 ~~~~~~g~~~~A~~~~~~al~~~-~p~~~~~~~~~~~~~~~ 744 (786)
..+.+.|+.++|.++|+++.+.. .| +...+..+...+.
T Consensus 183 ~~~~~~g~~d~A~~ll~~Mr~~g~~p--s~~T~~~l~~~F~ 221 (501)
T 4g26_A 183 KVSMDTKNADKVYKTLQRLRDLVRQV--SKSTFDMIEEWFK 221 (501)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTSSB--CHHHHHHHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHhCCCc--CHHHHHHHHHHHh
Confidence 66666666666666666665431 22 2445555444443
No 192
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.83 E-value=2.1e-07 Score=100.42 Aligned_cols=204 Identities=12% Similarity=0.052 Sum_probs=152.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhccCCH-----------------HHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCC
Q 003918 521 YVDLEESLGNLESTRAVYERILDLRIATP-----------------QIIINYALLLEEHKYFEDAFRVYERGVKIFKYPH 583 (786)
Q Consensus 521 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~ 583 (786)
-+.-....|++++|++.|.++++..|... .++..+|.+|...|++++|++.+.+++...+.-.
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 35556678999999999999999877642 3688999999999999999999999998743222
Q ss_pred hHHH---HHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCcc----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 003918 584 VKDI---WVTYLSKFVKRYGKTKLERARELFENAVETAPAD----AVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPN 656 (786)
Q Consensus 584 ~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~ 656 (786)
.... ....++.+. ...|++++|..++++++...+.. ....++..+|.++...|++++|..++++++.....
T Consensus 90 ~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 167 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFE--QVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKK 167 (434)
T ss_dssp HHHHHHHHHHHHHHHC--SCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHh
Confidence 2211 111122221 14578999999999999864332 13568889999999999999999999998876443
Q ss_pred C----chhhHHHHHHHHHHHhcChhHHHHHHHHHHHh----cCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHcc
Q 003918 657 H----EKLGMYEIYIARAAEIFGVPKTREIYEQAIES----GLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQF 726 (786)
Q Consensus 657 ~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 726 (786)
. .....+...+..+...|++++|+.++++++.. +.|......++..+|.++...|++++|...|..++..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 168 LDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp SSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 2 12344555555667889999999999999875 1222223456777888999999999999999999864
No 193
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.80 E-value=9.9e-08 Score=103.05 Aligned_cols=214 Identities=14% Similarity=0.097 Sum_probs=158.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhh-------------HHHHHHHHHHHHHhccCHHHHHHHHHHHhcCC
Q 003918 425 LWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDH-------------LASIWCEWAEMELRHKNFKGALELMRRATAEP 491 (786)
Q Consensus 425 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~-------------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 491 (786)
..+.-|.-+.+.|++++|++.|.++++..|..... ...++..++.++...|++++|.+++.+++...
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~ 85 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM 85 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 45667777889999999999999999988775421 23467889999999999999999999988643
Q ss_pred chHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccC------CHHHHHHHHHHHHHcccH
Q 003918 492 SVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIA------TPQIIINYALLLEEHKYF 565 (786)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~g~~ 565 (786)
+... .......+...++.++...|+++.|..++++++...+. ...++..+|.++...|++
T Consensus 86 ~~~~--------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 151 (434)
T 4b4t_Q 86 MQFA--------------KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQY 151 (434)
T ss_dssp HTSC--------------HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCH
T ss_pred HHcc--------------chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccCh
Confidence 3100 00012234455566667789999999999999987432 256889999999999999
Q ss_pred HHHHHHHHHHHhhcCC----CChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccC-----cHHHHHHHHHHHHH
Q 003918 566 EDAFRVYERGVKIFKY----PHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADA-----VKPLYLQYAKLEED 636 (786)
Q Consensus 566 ~~A~~~~~~al~~~~~----p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~~~~a~~~~~ 636 (786)
++|+..+++++..... |....++...+..+. ..|++++|+.++++++...+... ...++...+.++..
T Consensus 152 ~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~ 228 (434)
T 4b4t_Q 152 KDSLALINDLLREFKKLDDKPSLVDVHLLESKVYH---KLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCE 228 (434)
T ss_dssp HHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH---HhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHH
Confidence 9999999999876422 223345554443332 45899999999999998743211 13466778888888
Q ss_pred cCCHHHHHHHHHHHHhcCC
Q 003918 637 YGLAKRAMKVYDQATKAVP 655 (786)
Q Consensus 637 ~g~~~~A~~~~~~~l~~~p 655 (786)
.|++++|...|..++...+
T Consensus 229 ~~~y~~A~~~~~~a~~~~~ 247 (434)
T 4b4t_Q 229 DKDYKTAFSYFFESFESYH 247 (434)
T ss_dssp SSCHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHhh
Confidence 9999999999999986543
No 194
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.80 E-value=4.9e-08 Score=102.37 Aligned_cols=124 Identities=15% Similarity=0.092 Sum_probs=90.6
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHh----------------hccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Q 003918 514 SLRLWTFYVDLEESLGNLESTRAVYERILD----------------LRIATPQIIINYALLLEEHKYFEDAFRVYERGVK 577 (786)
Q Consensus 514 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~----------------~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 577 (786)
....|...+..+...|++++|+..|+++++ ..|.++.+|.++|.++...|++++|+..++++++
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 456678888899999999999999999998 5566667777777777777777777777777777
Q ss_pred hcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHH
Q 003918 578 IFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAM 644 (786)
Q Consensus 578 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~ 644 (786)
. +|.+..+|..++..+. ..|++++|+..|+++++..|+ +..++..++.++...++.+++.
T Consensus 302 ~--~p~~~~a~~~lg~~~~---~~g~~~eA~~~l~~Al~l~P~--~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 302 I--DPSNTKALYRRAQGWQ---GLKEYDQALADLKKAQEIAPE--DKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp T--CTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHHHHHH
T ss_pred h--CchhHHHHHHHHHHHH---HccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHH
Confidence 5 5777777766554433 336677777777777777776 5666777777766666665554
No 195
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.69 E-value=6.9e-08 Score=82.35 Aligned_cols=85 Identities=15% Similarity=0.055 Sum_probs=76.4
Q ss_pred hhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcHHHHH
Q 003918 43 KKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKAR 122 (786)
Q Consensus 43 ~~~~~~~~~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~~~A~ 122 (786)
+.+...|+++++.+|.++..|..++...... |++++|...|+++++.+|.++.+|..++.++...|+++.|.
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 73 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEH--------EQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGAR 73 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc--------cCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 3567788999999999999999999988876 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCC
Q 003918 123 RTFDRALCALPVT 135 (786)
Q Consensus 123 ~~~~~al~~~p~~ 135 (786)
..|++++...|..
T Consensus 74 ~~~~~al~~~~~~ 86 (115)
T 2kat_A 74 QAWESGLAAAQSR 86 (115)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccc
Confidence 9999999988853
No 196
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.68 E-value=2.7e-07 Score=83.64 Aligned_cols=146 Identities=11% Similarity=0.018 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 003918 461 ASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYER 540 (786)
Q Consensus 461 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 540 (786)
..++..++.++...|++++|+..+++++...+..- .......++..++.++...|++++|...|++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~--------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 74 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--------------DKAAERIAYSNLGNAYIFLGEFETASEYYKK 74 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhC--------------CchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 35556666666666666666666666665433100 0001123455555566666666666666666
Q ss_pred HHhhccCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 003918 541 ILDLRIAT------PQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENA 614 (786)
Q Consensus 541 al~~~p~~------~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 614 (786)
++...+.. ..++..+|.++...|++++|+..+++++...+...+.
T Consensus 75 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----------------------------- 125 (164)
T 3ro3_A 75 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR----------------------------- 125 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-----------------------------
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccch-----------------------------
Confidence 66553322 2345555555555555555555555555431100000
Q ss_pred HhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 003918 615 VETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVP 655 (786)
Q Consensus 615 l~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p 655 (786)
+. ...++..++.++...|++++|...++++++...
T Consensus 126 ----~~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 126 ----IG--EGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp ----HH--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred ----Hh--HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 00 234556666666666666666666666665543
No 197
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.68 E-value=1.9e-06 Score=93.89 Aligned_cols=168 Identities=11% Similarity=-0.021 Sum_probs=118.6
Q ss_pred CCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHhcCCCCchhhHHHHHHHHH
Q 003918 600 GKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYG---------LAKRAMKVYDQATKAVPNHEKLGMYEIYIARA 670 (786)
Q Consensus 600 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g---------~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~ 670 (786)
..|++++|.++|+++.+..-.. +...|..+...+.+.| .+++|.++|+++....- .|+...+...+..+
T Consensus 38 k~G~~~~A~~lf~~M~~~Gv~p-d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~-~Pd~~tyn~lI~~~ 115 (501)
T 4g26_A 38 KKGDVLEALRLYDEARRNGVQL-SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKV-VPNEATFTNGARLA 115 (501)
T ss_dssp TSCCHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHH
Confidence 5577888888888887763211 4566777766665433 36778888887766432 24566677777777
Q ss_pred HHhcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHcCCHH
Q 003918 671 AEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNHGNED 750 (786)
Q Consensus 671 ~~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~G~~~ 750 (786)
.+.|+.++|.++|+++...|... +...|..+...+.+.|+.++|.++|+.+.+. .-..+...|..++..+.+.|+.+
T Consensus 116 ~~~g~~~~A~~l~~~M~~~g~~P--d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-G~~Pd~~ty~~Li~~~~~~g~~d 192 (501)
T 4g26_A 116 VAKDDPEMAFDMVKQMKAFGIQP--RLRSYGPALFGFCRKGDADKAYEVDAHMVES-EVVPEEPELAALLKVSMDTKNAD 192 (501)
T ss_dssp HHHTCHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTTCHH
T ss_pred HhcCCHHHHHHHHHHHHHcCCCC--ccceehHHHHHHHHCCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhhCCCHH
Confidence 77888888888888877764333 2457777777888888888888888888765 22224778888888888888888
Q ss_pred HHHHHHHHHHHHHhhhhhhHHH
Q 003918 751 TFREMLRIKRSVSASYSQVIYF 772 (786)
Q Consensus 751 ~a~~~~~~~~~~~~~~~~~~~~ 772 (786)
+|.++++.|+..+-.++..+|.
T Consensus 193 ~A~~ll~~Mr~~g~~ps~~T~~ 214 (501)
T 4g26_A 193 KVYKTLQRLRDLVRQVSKSTFD 214 (501)
T ss_dssp HHHHHHHHHHHHTSSBCHHHHH
T ss_pred HHHHHHHHHHHhCCCcCHHHHH
Confidence 8888888888877777777764
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.67 E-value=1.6e-07 Score=80.05 Aligned_cols=47 Identities=13% Similarity=0.130 Sum_probs=19.9
Q ss_pred HHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCc
Q 003918 442 ARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPS 492 (786)
Q Consensus 442 A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~ 492 (786)
|+..|++++..+|+++ .+|..++.++...|++++|+..|++++...|
T Consensus 4 a~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 50 (115)
T 2kat_A 4 ITERLEAMLAQGTDNM----LLRFTLGKTYAEHEQFDAALPHLRAALDFDP 50 (115)
T ss_dssp HHHHHHHHHTTTCCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhCCCcH----HHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 3344444444444443 3444444444444444444444444444444
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.54 E-value=6.3e-08 Score=81.75 Aligned_cols=66 Identities=8% Similarity=-0.008 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCc
Q 003918 423 HTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPS 492 (786)
Q Consensus 423 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~ 492 (786)
+..|..+|..+...|++++|+..|++++..+|+++ .+|..++.++...|++++|+..|++++...|
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 69 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNP----VGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 44556666666666666666666666666666655 5566666666666666666666666666555
No 200
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.52 E-value=1.5e-06 Score=88.01 Aligned_cols=157 Identities=9% Similarity=0.085 Sum_probs=116.5
Q ss_pred chHhHHHHhhCCCChHhHHHHHHHHH------cCChhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccCCCCCchhHHH
Q 003918 13 DLLYEEELLRNPFSLKLWWRYLVAKR------EAPFKKRFVIYERALKALPGSYKLWHAYLIERLSIVKNLPITHPEYET 86 (786)
Q Consensus 13 ~~~~~~~l~~~p~~~~~w~~~~~~~~------~~~~~~~~~~~~~al~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 86 (786)
...-++....-|.+.++|-.+++... .....+++.+|++|++.+|+....|..++....-..............
T Consensus 180 ~~e~~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~ 259 (372)
T 3ly7_A 180 QRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAA 259 (372)
T ss_dssp HHHHHHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHH
Confidence 44455677788999999999987532 334589999999999999999998876544332211111111223333
Q ss_pred HHHHHHHH--HHhcCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHhcCCChHHHHHHHHH
Q 003918 87 LNNTFERA--LVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRVYRR 164 (786)
Q Consensus 87 A~~~~~~a--l~~~p~~~~~w~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~w~~~~~~~~~~~~~~~~A~~~~~~ 164 (786)
....++++ +..+|.++.++..++......|+++.|...+++|+..+|. ...|..++..+.-.|++ ++|...|++
T Consensus 260 l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s---~~a~~llG~~~~~~G~~-~eA~e~~~~ 335 (372)
T 3ly7_A 260 LNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS---WLNYVLLGKVYEMKGMN-REAADAYLT 335 (372)
T ss_dssp HHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHTTCH-HHHHHHHHH
T ss_pred HHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHCCCH-HHHHHHHHH
Confidence 33344432 2456899999998888888889999999999999999984 45667777888889999 999999999
Q ss_pred HHccCCCCH
Q 003918 165 YLKYDPSHI 173 (786)
Q Consensus 165 ~l~~~p~~~ 173 (786)
++.++|...
T Consensus 336 AlrL~P~~~ 344 (372)
T 3ly7_A 336 AFNLRPGAN 344 (372)
T ss_dssp HHHHSCSHH
T ss_pred HHhcCCCcC
Confidence 999999865
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.52 E-value=7.9e-07 Score=71.67 Aligned_cols=78 Identities=13% Similarity=0.224 Sum_probs=53.4
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHH
Q 003918 514 SLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLS 593 (786)
Q Consensus 514 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~ 593 (786)
+...|..++.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..+++++.. +|.+..++..++.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCHHHHHHHHH
Confidence 34566666666667777777777777777777777777777777777777777777777777775 5666666665443
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.51 E-value=8.7e-08 Score=80.88 Aligned_cols=63 Identities=13% Similarity=0.126 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 003918 516 RLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKI 578 (786)
Q Consensus 516 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 578 (786)
..|..+|..+...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..+++++..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 444455555555555555555555555555555555555555555555555555555555554
No 203
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.51 E-value=4.1e-06 Score=81.07 Aligned_cols=97 Identities=18% Similarity=0.174 Sum_probs=74.1
Q ss_pred cHHHHHHHHHHHHhhcCCCC--hHHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHH-c
Q 003918 564 YFEDAFRVYERGVKIFKYPH--VKDIWVTYLSKFVKRY---GKTKLERARELFENAVETAPADAVKPLYLQYAKLEED-Y 637 (786)
Q Consensus 564 ~~~~A~~~~~~al~~~~~p~--~~~~~~~~~~~~~~~~---~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~-~ 637 (786)
....|...+++++++ +|. +..+|..++ .++... .-|+.++|+..|+|+++++|+. +..++..||.++.. .
T Consensus 178 ~l~~A~a~lerAleL--DP~~~~GsA~~~LG-~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~-~id~~v~YA~~l~~~~ 253 (301)
T 3u64_A 178 TVHAAVMMLERACDL--WPSYQEGAVWNVLT-KFYAAAPESFGGGMEKAHTAFEHLTRYCSAH-DPDHHITYADALCIPL 253 (301)
T ss_dssp HHHHHHHHHHHHHHH--CTTHHHHHHHHHHH-HHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT-CSHHHHHHHHHTTTTT
T ss_pred hHHHHHHHHHHHHHh--CCCcccCHHHHHHH-HHHHhCCCccCCCHHHHHHHHHHHHHhCCCC-CchHHHHHHHHHHHhc
Confidence 357888889999998 787 566888655 444331 2378999999999999999963 36788899999887 4
Q ss_pred CCHHHHHHHHHHHHhcCCCC-chhhHHH
Q 003918 638 GLAKRAMKVYDQATKAVPNH-EKLGMYE 664 (786)
Q Consensus 638 g~~~~A~~~~~~~l~~~p~~-~~~~~~~ 664 (786)
|+.++|...++++++..|.. |...+..
T Consensus 254 gd~~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 254 NNRAGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp TCHHHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCChhHHH
Confidence 99999999999999987764 4444443
No 204
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.49 E-value=4.1e-07 Score=75.17 Aligned_cols=73 Identities=12% Similarity=-0.033 Sum_probs=65.3
Q ss_pred hCCCCHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhCCC
Q 003918 55 ALPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPV 134 (786)
Q Consensus 55 ~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 134 (786)
.+|+++.+|..++...... |++++|+..|+++++.+|+++.+|..++..+...|++++|...|++++...|.
T Consensus 2 ~~p~~~~~~~~lg~~~~~~--------g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKH--------DNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp ---CCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 5799999999999998876 99999999999999999999999999999999999999999999999998775
Q ss_pred C
Q 003918 135 T 135 (786)
Q Consensus 135 ~ 135 (786)
.
T Consensus 74 ~ 74 (100)
T 3ma5_A 74 E 74 (100)
T ss_dssp H
T ss_pred C
Confidence 3
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.46 E-value=9.6e-07 Score=71.15 Aligned_cols=85 Identities=13% Similarity=0.263 Sum_probs=73.2
Q ss_pred CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhh
Q 003918 421 KPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVA 500 (786)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 500 (786)
..+..|..+|..+...|++++|+..|++++..+|+++ .+|..++.++...|++++|+..|++++...|
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-------- 74 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA----EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-------- 74 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--------
Confidence 4567888999999999999999999999999999887 8889999999999999999999999998888
Q ss_pred ccCChhHHHHhhhcHHHHHHHHHHHHHcC
Q 003918 501 ADGNEPVQMKLHKSLRLWTFYVDLEESLG 529 (786)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 529 (786)
.+...+..++.++...|
T Consensus 75 ------------~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 75 ------------NNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp ------------TCHHHHHHHHHHHHHHC
T ss_pred ------------CCHHHHHHHHHHHHhcC
Confidence 67788888887766543
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.41 E-value=8.4e-07 Score=73.23 Aligned_cols=66 Identities=14% Similarity=0.152 Sum_probs=38.6
Q ss_pred hcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 003918 513 KSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKI 578 (786)
Q Consensus 513 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 578 (786)
+++.+|..+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|++++.+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345555555555555566666666666666655555555555665555556666666555555554
No 207
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.39 E-value=1.8e-05 Score=76.57 Aligned_cols=180 Identities=14% Similarity=0.102 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHHH-------Hcc--------------cHHHHHHHHHHHHhhcCCCChHHHHHH
Q 003918 532 ESTRAVYERILDLRIATPQIIINYALLLE-------EHK--------------YFEDAFRVYERGVKIFKYPHVKDIWVT 590 (786)
Q Consensus 532 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~-------~~g--------------~~~~A~~~~~~al~~~~~p~~~~~~~~ 590 (786)
.-.+.+++-.+..+|++..+....+..|. +.. .+..|..+|.|+... .
T Consensus 49 P~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y--------~--- 117 (301)
T 3u64_A 49 PLVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARY--------A--- 117 (301)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHH--------H---
T ss_pred cHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHH--------H---
Confidence 44566788888999999875555444433 221 244666666666653 1
Q ss_pred HHHHHHHH-------hCCCChHHHHHHHHHHHhh-CCccCcHHHHHHHHHHHHH---cC------CHHHHHHHHHHHHhc
Q 003918 591 YLSKFVKR-------YGKTKLERARELFENAVET-APADAVKPLYLQYAKLEED---YG------LAKRAMKVYDQATKA 653 (786)
Q Consensus 591 ~~~~~~~~-------~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~~~a~~~~~---~g------~~~~A~~~~~~~l~~ 653 (786)
...++.+ +..++.. -+..++.. .|++....+|...+..-.- .| ....|+.+++++++.
T Consensus 118 -~raL~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL 192 (301)
T 3u64_A 118 -LSSLETAYPGFTREVFSGDEQ----RLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL 192 (301)
T ss_dssp -HHHHHHHSTTHHHHHTSSCHH----HHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHhCccHHHHHHhcchh----hHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh
Confidence 1112222 1222222 23333443 5553335566666554431 23 367899999999999
Q ss_pred CCCCchhhHHHHHHHHHHHh-----cChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH-cCChHHHHHHHHHHHccC
Q 003918 654 VPNHEKLGMYEIYIARAAEI-----FGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKS-LGEIDRARGIYVFASQFA 727 (786)
Q Consensus 654 ~p~~~~~~~~~~~~~~~~~~-----~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~-~g~~~~A~~~~~~al~~~ 727 (786)
+|+......+..++..+... |+.++|+++|+++++. .|+. ....++.||+++.. .|+.+.|...+++|+..
T Consensus 193 DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L-nP~~-~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a- 269 (301)
T 3u64_A 193 WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY-CSAH-DPDHHITYADALCIPLNNRAGFDEALDRALAI- 269 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH-CCTT-CSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHC-
T ss_pred CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh-CCCC-CchHHHHHHHHHHHhcCCHHHHHHHHHHHHcC-
Confidence 99844444444555555563 8999999999999999 8863 25588888998877 59999999999999996
Q ss_pred CCC
Q 003918 728 DPR 730 (786)
Q Consensus 728 ~p~ 730 (786)
+|.
T Consensus 270 ~p~ 272 (301)
T 3u64_A 270 DPE 272 (301)
T ss_dssp CGG
T ss_pred CCC
Confidence 565
No 208
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.39 E-value=5.4e-07 Score=74.18 Aligned_cols=89 Identities=8% Similarity=0.107 Sum_probs=75.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhccCCHH-HHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHH
Q 003918 520 FYVDLEESLGNLESTRAVYERILDLRIATPQ-IIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKR 598 (786)
Q Consensus 520 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~ 598 (786)
..+..+...|++++|+..|+++++.+|+++. +|..+|.++...|++++|+..|+++++. +|.+..+|..
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~-------- 74 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL--NPDSPALQAR-------- 74 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHHH--------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHH--------
Confidence 4567777899999999999999999999999 9999999999999999999999999998 6888777643
Q ss_pred hCCCChHHHHHHHHHHHhhCCcc
Q 003918 599 YGKTKLERARELFENAVETAPAD 621 (786)
Q Consensus 599 ~~~~~~~~A~~~~~~al~~~p~~ 621 (786)
+.+.++...|++++...|++
T Consensus 75 ---~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 75 ---KMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp ---HHHHHHHHHHCCTTHHHHCC
T ss_pred ---HHHHHHHHHHHHHhccCccc
Confidence 23667888888888777763
No 209
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.31 E-value=9.6e-07 Score=72.65 Aligned_cols=86 Identities=12% Similarity=0.200 Sum_probs=75.8
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHH-HHHHHHHHHHHcCChHHHHHHHHHHHh
Q 003918 465 CEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLR-LWTFYVDLEESLGNLESTRAVYERILD 543 (786)
Q Consensus 465 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~A~~~~~~al~ 543 (786)
+..+..+...|++++|+..|++++...| .+.. +|..+|.++...|++++|+..|+++++
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p--------------------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEP--------------------VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCS--------------------STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCC--------------------CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3466777889999999999999999999 6778 999999999999999999999999999
Q ss_pred hccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 003918 544 LRIATPQIIINYALLLEEHKYFEDAFRVYERGVKI 578 (786)
Q Consensus 544 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 578 (786)
.+|+++.++.. +.+.+++..|++++..
T Consensus 64 ~~p~~~~~~~~--------~~~~~a~~~~~~~~~~ 90 (99)
T 2kc7_A 64 LNPDSPALQAR--------KMVMDILNFYNKDMYN 90 (99)
T ss_dssp HCTTSTHHHHH--------HHHHHHHHHHCCTTHH
T ss_pred cCCCcHHHHHH--------HHHHHHHHHHHHHhcc
Confidence 99999988744 5677788888888776
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.24 E-value=1.5e-05 Score=80.66 Aligned_cols=122 Identities=13% Similarity=0.086 Sum_probs=85.0
Q ss_pred ChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHccc--------HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCC
Q 003918 530 NLESTRAVYERILDLRIATPQIIINYALLLEEHKY--------FEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGK 601 (786)
Q Consensus 530 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~--------~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~ 601 (786)
+..+|+.+|+++++.+|+++.+|..++.++..... .......++.+.....+|.++.++..++..+.. .
T Consensus 214 ~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~---~ 290 (372)
T 3ly7_A 214 SLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALV---K 290 (372)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHH---H
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHh---C
Confidence 45889999999999999999998887776643211 111111222222222247777777664432322 2
Q ss_pred CChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 003918 602 TKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNH 657 (786)
Q Consensus 602 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~ 657 (786)
|++++|+..+++++..+|. ...|..+|.++...|++++|...|++++..+|..
T Consensus 291 gd~d~A~~~l~rAl~Ln~s---~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 291 GKTDESYQAINTGIDLEMS---WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp TCHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred CCHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 7888899999999988864 5677788888888899999999999999888864
No 211
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.22 E-value=1.9e-05 Score=63.55 Aligned_cols=77 Identities=8% Similarity=-0.079 Sum_probs=64.8
Q ss_pred CCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Q 003918 581 YPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEK 659 (786)
Q Consensus 581 ~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 659 (786)
+|+++.+|..++..++...+....++|+..++++++.+|+ ++..++.+|..+.+.|++++|+.+|+++++..|..+.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~--~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY--NEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 5888999998887775432222368999999999999999 7899999999999999999999999999999987443
No 212
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.20 E-value=7.5e-06 Score=65.97 Aligned_cols=74 Identities=11% Similarity=-0.115 Sum_probs=62.1
Q ss_pred CCCCHHHHHHHHHHHHHhccCCCCCchhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhCCC
Q 003918 56 LPGSYKLWHAYLIERLSIVKNLPITHPEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPV 134 (786)
Q Consensus 56 ~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 134 (786)
+|.++++|..++...+.... ....++|...|++||+.+|+++.++..++..++..|++++|...+++++..+|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~-----~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHK-----QAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTT-----TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 68899999999998754310 122688999999999999999999999999999999999999999999999885
No 213
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.20 E-value=1.7e-05 Score=85.61 Aligned_cols=138 Identities=7% Similarity=-0.081 Sum_probs=106.8
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhc-----cCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhcc
Q 003918 428 AFAKLYETYKDIANARVIFDKAVQV-----NYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAAD 502 (786)
Q Consensus 428 ~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 502 (786)
..+..+..+|++++|+..|++++.. .|+++ .....+..++.++..+|++++|..++++++.+....+ +
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp-~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~l----G-- 386 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNL-YVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLY----H-- 386 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS----C--
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHc----C--
Confidence 3444566889999999999999874 34444 3457888999999999999999999999986422000 0
Q ss_pred CChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-----ccCCHH---HHHHHHHHHHHcccHHHHHHHHHH
Q 003918 503 GNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDL-----RIATPQ---IIINYALLLEEHKYFEDAFRVYER 574 (786)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~---~~~~~~~~~~~~g~~~~A~~~~~~ 574 (786)
...+.....+..+|.++..+|++++|...|++|+.+ .|++|. +..+++..+..+|.+++|...|.+
T Consensus 387 ------~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~ 460 (490)
T 3n71_A 387 ------HNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHK 460 (490)
T ss_dssp ------TTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000134567888999999999999999999999986 577765 456778888889999999999998
Q ss_pred HHhh
Q 003918 575 GVKI 578 (786)
Q Consensus 575 al~~ 578 (786)
+.+.
T Consensus 461 ~~~~ 464 (490)
T 3n71_A 461 MREA 464 (490)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8775
No 214
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.16 E-value=3.1e-05 Score=68.01 Aligned_cols=109 Identities=16% Similarity=0.125 Sum_probs=61.5
Q ss_pred ChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHH
Q 003918 438 DIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRL 517 (786)
Q Consensus 438 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (786)
++++|+..|+++.+..... .. ++.++...+.+++|+++|+++.+... +..
T Consensus 10 d~~~A~~~~~~aa~~g~~~------a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~----------------------~~a 59 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMF------GC--LSLVSNSQINKQKLFQYLSKACELNS----------------------GNG 59 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTT------HH--HHHHTCTTSCHHHHHHHHHHHHHTTC----------------------HHH
T ss_pred CHHHHHHHHHHHHcCCCHh------hh--HHHHHHcCCCHHHHHHHHHHHHcCCC----------------------HHH
Confidence 3455666666665544222 11 55555555555556666666654422 345
Q ss_pred HHHHHHHHHH----cCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHH----cccHHHHHHHHHHHHhh
Q 003918 518 WTFYVDLEES----LGNLESTRAVYERILDLRIATPQIIINYALLLEE----HKYFEDAFRVYERGVKI 578 (786)
Q Consensus 518 ~~~~~~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~g~~~~A~~~~~~al~~ 578 (786)
+..++.++.. .+++++|...|+++.+. .++.+...++.+|.. .+++++|+..|+++.+.
T Consensus 60 ~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 60 CRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 5555555555 55666666666666654 556666666666666 55666666666666654
No 215
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.16 E-value=2.7e-05 Score=68.44 Aligned_cols=120 Identities=10% Similarity=0.009 Sum_probs=97.4
Q ss_pred CCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHh---
Q 003918 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELR--- 473 (786)
Q Consensus 397 ~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~--- 473 (786)
+++++|+..|+++.+.-+ +... +|.+|...+.+++|+..|+++.+. .++ ..+..++.++..
T Consensus 9 ~d~~~A~~~~~~aa~~g~--------~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~----~a~~~Lg~~y~~G~g 72 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE--------MFGC--LSLVSNSQINKQKLFQYLSKACEL--NSG----NGCRFLGDFYENGKY 72 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC--------TTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCH----HHHHHHHHHHHHCSS
T ss_pred cCHHHHHHHHHHHHcCCC--------Hhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCH----HHHHHHHHHHHcCCC
Confidence 356889999999996432 2333 888999889999999999999976 455 788999999988
Q ss_pred -ccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhccCC
Q 003918 474 -HKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEES----LGNLESTRAVYERILDLRIAT 548 (786)
Q Consensus 474 -~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~al~~~p~~ 548 (786)
.+++++|+.+|+++.+... +..+..++.++.. .+++++|+..|+++.+. .+
T Consensus 73 ~~~d~~~A~~~~~~Aa~~g~----------------------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~ 128 (138)
T 1klx_A 73 VKKDLRKAAQYYSKACGLND----------------------QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL--GS 128 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTTC----------------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TC
T ss_pred CCccHHHHHHHHHHHHcCCC----------------------HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CC
Confidence 7899999999999987633 5778888999988 88999999999999987 55
Q ss_pred HHHHHHHH
Q 003918 549 PQIIINYA 556 (786)
Q Consensus 549 ~~~~~~~~ 556 (786)
+.+...++
T Consensus 129 ~~A~~~l~ 136 (138)
T 1klx_A 129 EDACGILN 136 (138)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHh
Confidence 65555443
No 216
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.13 E-value=1.8e-05 Score=85.32 Aligned_cols=128 Identities=13% Similarity=0.077 Sum_probs=85.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHhh-----ccCCH---HHHHHHHHHHHHcccHHHHHHHHHHHHhhcC---CCChHHH---
Q 003918 522 VDLEESLGNLESTRAVYERILDL-----RIATP---QIIINYALLLEEHKYFEDAFRVYERGVKIFK---YPHVKDI--- 587 (786)
Q Consensus 522 ~~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~---~p~~~~~--- 587 (786)
+..+..+|++++|+.+|++++++ .|++| .++.++|.+|..+|++++|+.++++++.+.. -|+++.+
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 395 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMA 395 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 34456789999999999999986 45565 4678889999999999999999999998721 1444433
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHhh-----CCccC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003918 588 WVTYLSKFVKRYGKTKLERARELFENAVET-----APADA-VKPLYLQYAKLEEDYGLAKRAMKVYDQATK 652 (786)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~-~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~ 652 (786)
+..++. ++. .+|++++|..+|++|++. .|+++ ...+...++..+...|.+++|..+|.++.+
T Consensus 396 l~nLa~-~~~--~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 396 VMRAGL-TNW--HAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHH-HHH--HTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHH--HCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333222 222 346777777777777764 34421 233445566666666777777777766554
No 217
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.72 E-value=0.00039 Score=60.55 Aligned_cols=94 Identities=12% Similarity=0.025 Sum_probs=68.2
Q ss_pred hhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhcc---CHHHHHHHHHHHhcCC-chHHhhhhhccCChhHHHHhhhc
Q 003918 439 IANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHK---NFKGALELMRRATAEP-SVEVRRRVAADGNEPVQMKLHKS 514 (786)
Q Consensus 439 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g---~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~ 514 (786)
...+++.|.+.+..++.+. +..+.|+..+.+.+ ++++++.+|+..++.. |. ..
T Consensus 14 l~~~~~~y~~e~~~~~~~~----~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~-------------------~~ 70 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSK----STQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKE-------------------EQ 70 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCH----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH-------------------HH
T ss_pred HHHHHHHHHHHHccCCCcH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc-------------------ch
Confidence 3556777777777667665 77778888777766 5668888888888765 41 23
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHH
Q 003918 515 LRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINY 555 (786)
Q Consensus 515 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 555 (786)
...++.++..+.+.|++++|+..++++++++|++.++....
T Consensus 71 rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 71 RDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 56667777777888888888888888888888887764443
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.70 E-value=0.00023 Score=62.01 Aligned_cols=87 Identities=9% Similarity=0.081 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcC-C-CCchhhHHHHHHHHHHHhcChhH
Q 003918 604 LERARELFENAVETAPADAVKPLYLQYAKLEEDYG---LAKRAMKVYDQATKAV-P-NHEKLGMYEIYIARAAEIFGVPK 678 (786)
Q Consensus 604 ~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g---~~~~A~~~~~~~l~~~-p-~~~~~~~~~~~~~~~~~~~~~~~ 678 (786)
...+++.|++.+..+|. +..+.+.||+.+.+.+ +.++++.+++..++.. | .+.+...+.+... .+.++|++
T Consensus 14 l~~~~~~y~~e~~~~~~--~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~--~kl~~Y~~ 89 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSV--SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN--YRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHTTCC--CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH--HHTSCHHH
T ss_pred HHHHHHHHHHHHccCCC--cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHH--HHccCHHH
Confidence 34455555655555554 4566666666666655 4446666666666655 3 1222333333332 35556666
Q ss_pred HHHHHHHHHHhcCCChh
Q 003918 679 TREIYEQAIESGLPDKD 695 (786)
Q Consensus 679 A~~~~~~al~~~~p~~~ 695 (786)
|+++++++++. .|++.
T Consensus 90 A~~y~~~lL~i-eP~n~ 105 (152)
T 1pc2_A 90 ALKYVRGLLQT-EPQNN 105 (152)
T ss_dssp HHHHHHHHHHH-CTTCH
T ss_pred HHHHHHHHHhc-CCCCH
Confidence 66666666666 55543
No 219
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.48 E-value=0.00074 Score=55.63 Aligned_cols=75 Identities=8% Similarity=-0.005 Sum_probs=61.5
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhc-------cCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHH
Q 003918 514 SLRLWTFYVDLEESLGNLESTRAVYERILDLR-------IATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKD 586 (786)
Q Consensus 514 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~ 586 (786)
++.-++.+|..+...|++..|...|+.|++.. +..+.++..+|.++.+.|+++.|+..++++++. .|++..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--~P~~~~ 81 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPEHQR 81 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHH
Confidence 34556788888889999999999999999864 234678889999999999999999999999987 688877
Q ss_pred HHHH
Q 003918 587 IWVT 590 (786)
Q Consensus 587 ~~~~ 590 (786)
+...
T Consensus 82 ~~~n 85 (104)
T 2v5f_A 82 ANGN 85 (104)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 6554
No 220
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.41 E-value=0.0015 Score=53.79 Aligned_cols=82 Identities=10% Similarity=0.065 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003918 462 SIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERI 541 (786)
Q Consensus 462 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 541 (786)
.-++.+|..+...|++..|+..|+.++...+... . .-...+.++..++.++.++|+++.|+..++++
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~--------~-----~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~a 72 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGE--------I-----STIDKVSVLDYLSYAVYQQGDLDKALLLTKKL 72 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC--------C-----CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccC--------C-----CcccHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3446677777777777777777777775421000 0 00035688899999999999999999999999
Q ss_pred HhhccCCHHHHHHHH
Q 003918 542 LDLRIATPQIIINYA 556 (786)
Q Consensus 542 l~~~p~~~~~~~~~~ 556 (786)
++..|+++.+..++.
T Consensus 73 l~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 73 LELDPEHQRANGNLK 87 (104)
T ss_dssp HHHCTTCHHHHHHHH
T ss_pred HhcCCCCHHHHhhHH
Confidence 999999999887776
No 221
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.40 E-value=0.0018 Score=68.51 Aligned_cols=105 Identities=14% Similarity=0.156 Sum_probs=77.9
Q ss_pred HHcCChhHHHHHHHHHHhc-----cCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHH
Q 003918 434 ETYKDIANARVIFDKAVQV-----NYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQ 508 (786)
Q Consensus 434 ~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 508 (786)
...|++++|...|++++.. .|+++ .....+..++.++..+|++++|..++++++.+....+ +
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp-~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~l----G-------- 375 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNV-YMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHY----P-------- 375 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS----C--------
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhch-HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHc----C--------
Confidence 3568899999999999873 45554 3447788899999999999999999999986422000 0
Q ss_pred HHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-----ccCCHHH
Q 003918 509 MKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDL-----RIATPQI 551 (786)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~ 551 (786)
...++....+..+|.++..+|++++|...|++|+++ .|++|.+
T Consensus 376 ~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 376 VYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred CCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 000134566788899999999999999999999886 4566553
No 222
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.37 E-value=0.00051 Score=72.76 Aligned_cols=94 Identities=10% Similarity=0.024 Sum_probs=74.2
Q ss_pred hccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-----ccC
Q 003918 473 RHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDL-----RIA 547 (786)
Q Consensus 473 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~ 547 (786)
..|++++|..++++++.+....+ + ..++.-...+..++.+|..+|++++|...|++++++ .|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~l----g--------~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~ 377 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVF----E--------DSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVY 377 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTB----C--------TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSS
T ss_pred hccCHHHHHHHHHHHHHHhhCcc----C--------hhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCC
Confidence 46889999999999986422000 0 000134567788899999999999999999999986 566
Q ss_pred CHH---HHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 003918 548 TPQ---IIINYALLLEEHKYFEDAFRVYERGVKI 578 (786)
Q Consensus 548 ~~~---~~~~~~~~~~~~g~~~~A~~~~~~al~~ 578 (786)
+|. .++++|.+|..+|++++|+.+|++|+++
T Consensus 378 Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 378 SLNVASMWLKLGRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 665 5788999999999999999999999997
No 223
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.14 E-value=0.0079 Score=63.71 Aligned_cols=106 Identities=7% Similarity=-0.115 Sum_probs=78.9
Q ss_pred HHHcCChhHHHHHHHHHHhc-----cCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhH
Q 003918 433 YETYKDIANARVIFDKAVQV-----NYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPV 507 (786)
Q Consensus 433 ~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 507 (786)
+..+|++++|+..|++++.. .|+++ .....+..++..+..+|++++|..++++++.+....+ +
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~-~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~l----g------- 364 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINI-YQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFF----P------- 364 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHS----C-------
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccch-HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHc----C-------
Confidence 45679999999999999974 34444 3457888899999999999999999999986421000 0
Q ss_pred HHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-----ccCCHHH
Q 003918 508 QMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDL-----RIATPQI 551 (786)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~ 551 (786)
...+.....+..+|.++..+|++++|...|++|+++ .|++|.+
T Consensus 365 -~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 412 (429)
T 3qwp_A 365 -GSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLI 412 (429)
T ss_dssp -SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred -CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence 000134466788899999999999999999999886 5666654
No 224
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.14 E-value=0.0013 Score=69.79 Aligned_cols=95 Identities=16% Similarity=0.134 Sum_probs=75.4
Q ss_pred HhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-----cc
Q 003918 472 LRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDL-----RI 546 (786)
Q Consensus 472 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p 546 (786)
..+|++++|+..+++++++....+ -...+.....+..++.++..+|++++|...+++++.+ .|
T Consensus 298 ~~~g~~~~a~~~~~~~L~~~~~~l------------g~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~ 365 (429)
T 3qwp_A 298 KAHWKWEQVLAMCQAIISSNSERL------------PDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPG 365 (429)
T ss_dssp HHTTCHHHHHHHHHHHHTCSSCCC------------CTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCS
T ss_pred HhhccHHHHHHHHHHHHHhccCcC------------CccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCC
Confidence 467899999999999997533000 0000134567788899999999999999999999986 46
Q ss_pred CCHH---HHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 003918 547 ATPQ---IIINYALLLEEHKYFEDAFRVYERGVKI 578 (786)
Q Consensus 547 ~~~~---~~~~~~~~~~~~g~~~~A~~~~~~al~~ 578 (786)
++|. .++++|.+|..+|++++|+..|++|+++
T Consensus 366 ~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 366 SHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 6665 5788999999999999999999999987
No 225
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=97.11 E-value=0.043 Score=49.79 Aligned_cols=121 Identities=17% Similarity=0.316 Sum_probs=90.0
Q ss_pred hHHHHHHHHHHHhh---ccCCH-HHHHHHHHHHHHc---ccH--H-HHH-HHHHHHHhhc-------CCCChHHHHHHHH
Q 003918 531 LESTRAVYERILDL---RIATP-QIIINYALLLEEH---KYF--E-DAF-RVYERGVKIF-------KYPHVKDIWVTYL 592 (786)
Q Consensus 531 ~~~A~~~~~~al~~---~p~~~-~~~~~~~~~~~~~---g~~--~-~A~-~~~~~al~~~-------~~p~~~~~~~~~~ 592 (786)
....+..|+..+.. ..+|| +.|..+....... |.. + .-. .++++++..+ .||....+|..|+
T Consensus 8 l~~~r~~fE~~l~~~l~~~dDPL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~Ya 87 (202)
T 3esl_A 8 LNQTKIAYEQRLLNDLEDMDDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIWYI 87 (202)
T ss_dssp HHHHHHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHHHH
Confidence 44566777777766 45565 6888887655432 332 2 234 6889998875 3456678999988
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 003918 593 SKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVP 655 (786)
Q Consensus 593 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p 655 (786)
..+ ..++...++++|.-+....-+......|..+|.++...|++.+|.++|+.+++...
T Consensus 88 ~~~----~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A 146 (202)
T 3esl_A 88 NLF----LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNC 146 (202)
T ss_dssp HHH----STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred Hhh----cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 654 12457789999999998876655788999999999999999999999999999765
No 226
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=96.89 E-value=0.02 Score=49.61 Aligned_cols=47 Identities=15% Similarity=0.217 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHcc
Q 003918 679 TREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQF 726 (786)
Q Consensus 679 A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 726 (786)
++++|......|... .....|..+|..+...|++.+|.++|..+++.
T Consensus 84 p~~if~~L~~~~IG~-~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGT-LSSPLYIAWAGHLEAQGELQHASAVLQRGIQN 130 (152)
T ss_dssp HHHHHHHHHTTTTTT-TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCcH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 555555555442222 13445555666666666666666666666654
No 227
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.78 E-value=0.0099 Score=49.70 Aligned_cols=89 Identities=9% Similarity=0.070 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhcC-CC-CchhhHHHHHHHHHHHhcChhH
Q 003918 604 LERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKR---AMKVYDQATKAV-PN-HEKLGMYEIYIARAAEIFGVPK 678 (786)
Q Consensus 604 ~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~---A~~~~~~~l~~~-p~-~~~~~~~~~~~~~~~~~~~~~~ 678 (786)
+..++..|++.+..++. +....+.||+.+....+... ++.+++..++.. |. ..+...+.+.+ +.+.|+|++
T Consensus 17 l~~~~~~y~~e~~~~~~--s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg--~yklg~Y~~ 92 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSV--SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG--NYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHSCC--CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH--HHHTTCHHH
T ss_pred HHHHHHHHHHHhccCCC--cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH--HHHhhhHHH
Confidence 55677777777776654 56778888888877665544 777777777765 31 11222222222 246777777
Q ss_pred HHHHHHHHHHhcCCChhHH
Q 003918 679 TREIYEQAIESGLPDKDVK 697 (786)
Q Consensus 679 A~~~~~~al~~~~p~~~~~ 697 (786)
|+.+++.+++. .|+|...
T Consensus 93 A~~~~~~lL~~-eP~n~QA 110 (126)
T 1nzn_A 93 ALKYVRGLLQT-EPQNNQA 110 (126)
T ss_dssp HHHHHHHHHHH-CTTCHHH
T ss_pred HHHHHHHHHHh-CCCCHHH
Confidence 77777777777 7775443
No 228
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.74 E-value=0.035 Score=46.38 Aligned_cols=96 Identities=11% Similarity=0.006 Sum_probs=71.2
Q ss_pred ChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHH---HHHHHHHHhcCC-chHHhhhhhccCChhHHHHhhh
Q 003918 438 DIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKG---ALELMRRATAEP-SVEVRRRVAADGNEPVQMKLHK 513 (786)
Q Consensus 438 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~---A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~ 513 (786)
....++..|.+.+..++.+. ..-+.||..+.+..+... ++.+++..+... |. .
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~----~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~-------------------~ 72 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSK----STQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE-------------------E 72 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCH----HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHH-------------------H
T ss_pred HHHHHHHHHHHHhccCCCcH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc-------------------h
Confidence 34567778887777666555 677778877777766555 888999888766 41 2
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHH
Q 003918 514 SLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYA 556 (786)
Q Consensus 514 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 556 (786)
.....+.++..+.+.|++++|+..++..|+..|++.++.....
T Consensus 73 ~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~ 115 (126)
T 1nzn_A 73 QRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELER 115 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3455666677788999999999999999999999988655443
No 229
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=96.51 E-value=0.15 Score=46.33 Aligned_cols=138 Identities=10% Similarity=0.162 Sum_probs=89.2
Q ss_pred hHHHHHHHHHHHhh--CCccCcHHHHHHHHHHHHH---cCCH--H-HHH-HHHHHHHhcCCCCchh-------hHHHHHH
Q 003918 604 LERARELFENAVET--APADAVKPLYLQYAKLEED---YGLA--K-RAM-KVYDQATKAVPNHEKL-------GMYEIYI 667 (786)
Q Consensus 604 ~~~A~~~~~~al~~--~p~~~~~~~~~~~a~~~~~---~g~~--~-~A~-~~~~~~l~~~p~~~~~-------~~~~~~~ 667 (786)
..+.+..|++.+.. ...+.-..+|..|+..... .|.. + .-. .++++|++..-+++.+ .+|..|+
T Consensus 8 l~~~r~~fE~~l~~~l~~~dDPL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~Ya 87 (202)
T 3esl_A 8 LNQTKIAYEQRLLNDLEDMDDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIWYI 87 (202)
T ss_dssp HHHHHHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHHHH
Confidence 55677777777776 2222126788887776554 2433 1 233 6788888766554332 2444444
Q ss_pred HHHHHhcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHccC-CCCCCHHHHHHHHHHHHH
Q 003918 668 ARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFA-DPRSDTEFWNRWHEFEVN 745 (786)
Q Consensus 668 ~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-~p~~~~~~~~~~~~~~~~ 745 (786)
... ..++...++++|......|... .....|..||..+...|++.+|.++|..+++.. .|- ..+-..+..|..+
T Consensus 88 ~~~-~~~~~~~p~~if~~L~~~~IG~-~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~--~rL~~~~~~F~~R 162 (202)
T 3esl_A 88 NLF-LSNNFHESENTFKYMFNKGIGT-KLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY--NRLLRSLSNYEDR 162 (202)
T ss_dssp HHH-STTCHHHHHHHHHHHHHHTSST-TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH--HHHHHHHHHHHHH
T ss_pred Hhh-cccccCCHHHHHHHHHHCCCcH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH--HHHHHHHHHHHHH
Confidence 421 1344678999999988874433 357799999999999999999999999999862 332 4556666666555
No 230
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=96.36 E-value=0.11 Score=45.07 Aligned_cols=120 Identities=10% Similarity=0.133 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCcc----CcHHHHHHHHHHHHHcCCHH
Q 003918 566 EDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPAD----AVKPLYLQYAKLEEDYGLAK 641 (786)
Q Consensus 566 ~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~~~a~~~~~~g~~~ 641 (786)
..+...|+..|..+...+-...|..|+......+..|. ..-..++++|+....++ .+......+..+- ...+
T Consensus 7 ~~~~~~fE~~i~~y~gdDPL~~w~~YI~W~e~~~P~g~-~~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya---~~~~ 82 (152)
T 4a1g_A 7 ENVLQMLEAHMQSYKGNDPLGEWERYIQWVEENFPENK-EYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFA---EYNS 82 (152)
T ss_dssp HHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHTTCSSCT-HHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHH---TTBS
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCc-hhHHHHHHHHHHHhcccccccCCHHHHHHHHHHH---HhcC
Confidence 44455566666655444445566666665555443333 23455666666654331 1222222222221 1122
Q ss_pred HHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHHh
Q 003918 642 RAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIES 689 (786)
Q Consensus 642 ~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 689 (786)
.+..+|..+....-......++..|.......|++.+|.++|+.+++.
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN 130 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 255566665555544444555555555555666666666666666665
No 231
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=96.29 E-value=0.082 Score=46.47 Aligned_cols=66 Identities=12% Similarity=0.195 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHc
Q 003918 679 TREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDTEFWNRWHEFEVNH 746 (786)
Q Consensus 679 A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~ 746 (786)
++++|......|... ..+..|..||..+...|++.+|.++|..+++.. -.....+-.....|..+.
T Consensus 79 p~~if~~L~~~~IG~-~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~-A~P~~~L~~~~~~F~~R~ 144 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGV-SLAQFYISWAEEYEARENFRKADAIFQEGIQQK-AEPLERLQSQHRQFQARV 144 (164)
T ss_dssp HHHHHHHHHHTTSST-TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCcch-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHH
Confidence 444555554442221 134455556666666666666666666666541 111134444444444443
No 232
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=96.09 E-value=0.09 Score=60.15 Aligned_cols=112 Identities=11% Similarity=-0.101 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChhHHHHHH
Q 003918 624 KPLYLQYAKLEEDYGLAKRAMKVYDQATKA--VPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCL 701 (786)
Q Consensus 624 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~~ 701 (786)
...+..+...+.+.|+.++|..+|..+-+. ..-.+++..+..++..+.+.|+.++|.++|+++.+.|... +...|.
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P--DvvTYn 204 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP--DLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC--CHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--cHHHHH
Confidence 346777888888888888888888765432 0112467777888887788888888888888888776433 245777
Q ss_pred HHHHHHHHcCCh-HHHHHHHHHHHccC-CCCCCHHHHHHH
Q 003918 702 KYAELEKSLGEI-DRARGIYVFASQFA-DPRSDTEFWNRW 739 (786)
Q Consensus 702 ~~~~~~~~~g~~-~~A~~~~~~al~~~-~p~~~~~~~~~~ 739 (786)
.+...+.+.|+. +.|.++|+.+.+.+ .|+ ...+...
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD--~vtY~~l 242 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQ--ALFTAVL 242 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSH--HHHHHSC
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCC--hhhcccc
Confidence 777777777774 67888888888762 333 4455444
No 233
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=95.90 E-value=0.28 Score=43.04 Aligned_cols=117 Identities=18% Similarity=0.286 Sum_probs=88.1
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHhhCCccC----c---HHHHHHHHHHHHHcCCHH
Q 003918 570 RVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLE-RARELFENAVETAPADA----V---KPLYLQYAKLEEDYGLAK 641 (786)
Q Consensus 570 ~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~A~~~~~~al~~~p~~~----~---~~~~~~~a~~~~~~g~~~ 641 (786)
..|+..+......+-...|..|+......+..|..+ .-..++++|+....++. + ..+|+.|+.+. ++
T Consensus 4 ~~fE~~i~~~~gdDPL~~w~~yIkW~e~~~p~~~~~s~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~---~~-- 78 (164)
T 2wvi_A 4 RAFEYEIRFYTGNDPLDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC---NE-- 78 (164)
T ss_dssp HHHHHHCCCCCSSCTHHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC---SC--
T ss_pred HHHHHHHhhcCCCCChHHHHHHHHHHHHHCcCCCccchHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc---CC--
Confidence 457777776555566789999999988887554432 35779999999876621 1 45888888763 44
Q ss_pred HHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCC
Q 003918 642 RAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPD 693 (786)
Q Consensus 642 ~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~ 693 (786)
+..+|..+....-......++..|.......|++.+|.++|..++.. ...
T Consensus 79 -p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~-~A~ 128 (164)
T 2wvi_A 79 -PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQ-KAE 128 (164)
T ss_dssp -HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCB
T ss_pred -HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCC
Confidence 66788888887777667788889998888999999999999999998 444
No 234
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=95.85 E-value=0.17 Score=46.80 Aligned_cols=34 Identities=12% Similarity=0.344 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHhhC
Q 003918 585 KDIWVTYLSKFVKRYGKTK--LERARELFENAVETA 618 (786)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~al~~~ 618 (786)
...|..|+......+..|. -..-..++++|+...
T Consensus 72 L~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F 107 (223)
T 4aez_C 72 LQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREF 107 (223)
T ss_dssp HHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHh
Confidence 4456666655555443322 112345555555543
No 235
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=95.76 E-value=0.63 Score=47.86 Aligned_cols=100 Identities=15% Similarity=0.050 Sum_probs=70.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc-hh---hHHHHHHHHHHHhcChhHHHHHHHHHHHh--cC-CCh-hHHH
Q 003918 627 YLQYAKLEEDYGLAKRAMKVYDQATKAVPNHE-KL---GMYEIYIARAAEIFGVPKTREIYEQAIES--GL-PDK-DVKA 698 (786)
Q Consensus 627 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~---~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~-p~~-~~~~ 698 (786)
-..+|.++...|++.+|.+++.+.++.+...+ .. .+...-+.++...+++.+++..+.++... .. +++ ....
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 34789999999999999999999888765422 22 22333334456779999999999998765 11 221 2334
Q ss_pred HHHHHHHHHH-HcCChHHHHHHHHHHHcc
Q 003918 699 MCLKYAELEK-SLGEIDRARGIYVFASQF 726 (786)
Q Consensus 699 ~~~~~~~~~~-~~g~~~~A~~~~~~al~~ 726 (786)
+...-|.++. ..+++.+|...|-.+...
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 4445577788 799999999999888754
No 236
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=95.75 E-value=0.27 Score=45.47 Aligned_cols=134 Identities=16% Similarity=0.298 Sum_probs=91.9
Q ss_pred hHHHHHHHHHHHhh--CCccCcHHHHHHHHHHHHHc---CC--HHHHHHHHHHHHhcCCCCchh----hHHHHHHHHHHH
Q 003918 604 LERARELFENAVET--APADAVKPLYLQYAKLEEDY---GL--AKRAMKVYDQATKAVPNHEKL----GMYEIYIARAAE 672 (786)
Q Consensus 604 ~~~A~~~~~~al~~--~p~~~~~~~~~~~a~~~~~~---g~--~~~A~~~~~~~l~~~p~~~~~----~~~~~~~~~~~~ 672 (786)
..+.+..|+..|.. ..+++ ..+|..|+...... |. -..-..++++|++.+.+++.+ .....|+.+. .
T Consensus 51 l~~~r~~fE~~i~~~~~~dDP-L~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya-~ 128 (223)
T 4aez_C 51 LQKERMGHERKIETSESLDDP-LQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYV-N 128 (223)
T ss_dssp HHHHHHHHHHHHHHGGGSSCT-HHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHhcccCCCC-hHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHHH-H
Confidence 56688888888876 22333 78999999877662 43 123467899999887765443 3334444432 1
Q ss_pred hcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHccC-CCCCCHHHHHHHHHHHH
Q 003918 673 IFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFA-DPRSDTEFWNRWHEFEV 744 (786)
Q Consensus 673 ~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-~p~~~~~~~~~~~~~~~ 744 (786)
..+.++++|......|... .....|..||.++...|++.+|.++|..+++.. .|- ..+-..+..|..
T Consensus 129 --~~~~p~~if~~L~~~~IG~-~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~--~rL~~~~~~F~~ 196 (223)
T 4aez_C 129 --YIDEPVELFSFLAHHHIGQ-ESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF--LRFQQKYQQFTH 196 (223)
T ss_dssp --TCSCHHHHHHHHHHTTCST-TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH--HHHHHHHHHHHH
T ss_pred --ccCCHHHHHHHHHHCCcch-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH--HHHHHHHHHHHH
Confidence 3468889999998874433 357899999999999999999999999999862 332 444444444443
No 237
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.87 E-value=0.45 Score=40.41 Aligned_cols=55 Identities=9% Similarity=0.018 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchh
Q 003918 605 ERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKL 660 (786)
Q Consensus 605 ~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 660 (786)
.+++.+++..+...|.. .....+.+|.-+.+.|++++|+++.+.+|+..|++...
T Consensus 59 ~~GI~LLe~l~~~~~~~-~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 59 RLGVKILTDIYKEAESR-RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp HHHHHHHHHHHHHCCST-HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred HHHHHHHHHHHhcCccc-hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 34444555544444431 23344444444455555555555555555555544333
No 238
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=94.84 E-value=0.078 Score=60.64 Aligned_cols=104 Identities=13% Similarity=-0.011 Sum_probs=79.4
Q ss_pred ChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhh-----CCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 003918 583 HVKDIWVTYLSKFVKRYGKTKLERARELFENAVET-----APADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNH 657 (786)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~ 657 (786)
.....+..+++.+.. .|++++|..+|..+.+. .| +...|..+..-+.+.|+.++|.++|+++....- .
T Consensus 125 ~~~~TynaLIdglcK---~G~leeA~~Lf~eM~~m~~kG~~P---dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~-~ 197 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLL---TDQLPLAHHLLVVHHGQRQKRKLL---TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGL-T 197 (1134)
T ss_dssp HHHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHSHHHHTTC---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC-C
T ss_pred hHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHhhcCCCC---CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-C
Confidence 334467777776664 38899999999776532 44 477899999999999999999999999876543 4
Q ss_pred chhhHHHHHHHHHHHhcCh-hHHHHHHHHHHHhcCCC
Q 003918 658 EKLGMYEIYIARAAEIFGV-PKTREIYEQAIESGLPD 693 (786)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~-~~A~~~~~~al~~~~p~ 693 (786)
|+...+...+....+.|.. ++|.++|+++...|...
T Consensus 198 PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~P 234 (1134)
T 3spa_A 198 PDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKL 234 (1134)
T ss_dssp CCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCS
T ss_pred CcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCC
Confidence 5777788888877788874 67889999998886544
No 239
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.70 E-value=0.23 Score=41.57 Aligned_cols=72 Identities=8% Similarity=-0.037 Sum_probs=46.0
Q ss_pred cHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCC-chhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChhHH
Q 003918 623 VKPLYLQYAKLEEDYGL---AKRAMKVYDQATKAVPNH-EKLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVK 697 (786)
Q Consensus 623 ~~~~~~~~a~~~~~~g~---~~~A~~~~~~~l~~~p~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~ 697 (786)
+...-++||+.+.+..+ ..+++.+++..++..|.. .+...+.+.+. .+.|+|++|+++.+.+++. .|+|...
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~--yklgdY~~Ar~y~d~lL~~-eP~N~QA 114 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGC--YKLGEYSMAKRYVDTLFEH-ERNNKQV 114 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH--HHHTCHHHHHHHHHHHHTT-CTTCHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHH--HHhhhHHHHHHHHHHHHhh-CCCCHHH
Confidence 56777888887777543 446777777777766633 22222333222 4677788888887777777 7776543
No 240
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.56 E-value=0.15 Score=42.65 Aligned_cols=83 Identities=10% Similarity=0.049 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHH
Q 003918 585 KDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYE 664 (786)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~ 664 (786)
+..-+.|+..+...-...+..+++.+++..+...|.. ....++.+|.-+.+.|++++|+++.+.+|+..|++.......
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~-~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR-RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 3444555544433211224567888888888877743 466777888888889999999999999999988876665555
Q ss_pred HHHH
Q 003918 665 IYIA 668 (786)
Q Consensus 665 ~~~~ 668 (786)
..+.
T Consensus 119 ~~Ie 122 (134)
T 3o48_A 119 SMVE 122 (134)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 241
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.44 E-value=0.3 Score=41.48 Aligned_cols=76 Identities=8% Similarity=-0.051 Sum_probs=54.8
Q ss_pred cHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCc-hhhHHHHHHHHHHHhcChhHHHHHHHHHHHhcCCChhHHH
Q 003918 623 VKPLYLQYAKLEEDYGL---AKRAMKVYDQATKAVPNHE-KLGMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKA 698 (786)
Q Consensus 623 ~~~~~~~~a~~~~~~g~---~~~A~~~~~~~l~~~p~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~ 698 (786)
+....++||+.+.+..+ ..+++.+++..++..|... +...+.+.. +.+.|+|++|+++.+.+++. .|+|....
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg--~ykl~~Y~~Ar~y~d~lL~~-eP~n~QA~ 114 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIG--CYKLGEYSMAKRYVDTLFEH-ERNNKQVG 114 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHH--HHTTTCHHHHHHHHHHHHHT-CCCCHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHH--HHHhhhHHHHHHHHHHHHhc-CCCcHHHH
Confidence 67889999999988654 5578899999998877542 222233322 34789999999999999999 88876544
Q ss_pred HHH
Q 003918 699 MCL 701 (786)
Q Consensus 699 ~~~ 701 (786)
...
T Consensus 115 ~Lk 117 (144)
T 1y8m_A 115 ALK 117 (144)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 242
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.30 E-value=0.35 Score=42.34 Aligned_cols=63 Identities=10% Similarity=0.087 Sum_probs=47.2
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhccCCC-----hhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhc
Q 003918 427 VAFAKLYETYKDIANARVIFDKAVQVNYKT-----VDHLASIWCEWAEMELRHKNFKGALELMRRATA 489 (786)
Q Consensus 427 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 489 (786)
..-.+.....|.|+.|+-....++....++ +.....+...+|+.+...++|.+|...|++++.
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 344455667888999988888866644222 333456788899999999999999999999874
No 243
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.30 E-value=0.33 Score=54.49 Aligned_cols=134 Identities=8% Similarity=0.039 Sum_probs=88.9
Q ss_pred HHHHHHHHHcCC-hhHHHHHHHHHHhccCCChhhHHHHHHH--HHHHHHh-ccCHHHHHHHHHHHhc--------CCchH
Q 003918 427 VAFAKLYETYKD-IANARVIFDKAVQVNYKTVDHLASIWCE--WAEMELR-HKNFKGALELMRRATA--------EPSVE 494 (786)
Q Consensus 427 ~~~a~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~~~~--~a~~~~~-~g~~~~A~~~~~~al~--------~~~~~ 494 (786)
..+..+....++ .+.|+..|++....+|... +.+. +..+... ..+--+|++++.++++ .++.+
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~-----~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~ 326 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHD-----IYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRD 326 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchh-----HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccc
Confidence 344444444555 5889999999999888652 2222 2222222 2234456677766653 12200
Q ss_pred HhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHH
Q 003918 495 VRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYER 574 (786)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 574 (786)
. ... ........+...-+.++...|+++-|+.+-++++...|.+...|..++.+|...|+++.|+-.++-
T Consensus 327 ~---------~~~-~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 327 A---------DSA-RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp H---------HHH-HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred c---------ccc-cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 0 000 000012234555577888899999999999999999999999999999999999999999988876
Q ss_pred H
Q 003918 575 G 575 (786)
Q Consensus 575 a 575 (786)
+
T Consensus 397 c 397 (754)
T 4gns_B 397 M 397 (754)
T ss_dssp S
T ss_pred C
Confidence 6
No 244
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.18 E-value=0.31 Score=42.64 Aligned_cols=69 Identities=7% Similarity=-0.107 Sum_probs=46.0
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 003918 465 CEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDL 544 (786)
Q Consensus 465 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 544 (786)
...+......|.++.|+-+...++....+.- . ..- ......+...+|+.+...|++.+|...|+++|+.
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~--~----~~s-----p~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNP--E----LFS-----PPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHST--T----SSC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCc--c----ccc-----HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 4445555778899999988888765432000 0 000 0012346677789999999999999999999876
No 245
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=93.38 E-value=8 Score=39.65 Aligned_cols=180 Identities=16% Similarity=0.081 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHH-cCChHHHHHHHHH
Q 003918 462 SIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEES-LGNLESTRAVYER 540 (786)
Q Consensus 462 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~A~~~~~~ 540 (786)
...+.++.++.+.|+.++..+++.......+.-.+. ....+-..+.+.... .+..+.-.++...
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ka---------------k~~k~v~~l~~~~~~~~~~~~~~~~~~~~ 84 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKA---------------KAAKLVRSLVDMFLDMDAGTGIEVQLCKD 84 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHH---------------HHHHHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchH---------------HHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 455677888888888888887777665332200000 112222233333222 2444555556666
Q ss_pred HHhhccCCHHHH------HHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHH-HHHHHHHHhCCCChHHHHHHHHH
Q 003918 541 ILDLRIATPQII------INYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVT-YLSKFVKRYGKTKLERARELFEN 613 (786)
Q Consensus 541 al~~~p~~~~~~------~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~A~~~~~~ 613 (786)
+++...+.-..| ..+|.+|...|++.+|.+++.+.++..+..++...... ++.-.......+++.+++..+.+
T Consensus 85 ~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~ 164 (394)
T 3txn_A 85 CIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTS 164 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 665433332333 36899999999999999999999887544333322221 11111111245889999999999
Q ss_pred HHhhC----C-ccCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCC
Q 003918 614 AVETA----P-ADAVKPLYLQYAKLEE-DYGLAKRAMKVYDQATKAVPN 656 (786)
Q Consensus 614 al~~~----p-~~~~~~~~~~~a~~~~-~~g~~~~A~~~~~~~l~~~p~ 656 (786)
+.... + ......+...-|.++. ..+++..|...|-.+...+..
T Consensus 165 a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~ 213 (394)
T 3txn_A 165 ARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDS 213 (394)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccc
Confidence 87652 2 1112334555667777 799999999999888765543
No 246
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.50 E-value=4.8 Score=42.40 Aligned_cols=175 Identities=9% Similarity=0.027 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHhcC----CchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHH
Q 003918 461 ASIWCEWAEMELRHKNFKGALELMRRATAE----PSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRA 536 (786)
Q Consensus 461 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 536 (786)
..+...++.++...|++.+|.+++...... .+. ..-..++..-..++...+++.+|..
T Consensus 137 arl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~------------------~~kve~~l~q~rl~l~~~d~~~a~~ 198 (445)
T 4b4t_P 137 ARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEM------------------SEKIQFILEQMELSILKGDYSQATV 198 (445)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCH------------------HHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccH------------------HHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 456677899999999999999999887521 110 0234667777888889999999999
Q ss_pred HHHHHHh---hccCCHH----HHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHH--HHHHhCCCChHHH
Q 003918 537 VYERILD---LRIATPQ----IIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSK--FVKRYGKTKLERA 607 (786)
Q Consensus 537 ~~~~al~---~~p~~~~----~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~--~~~~~~~~~~~~A 607 (786)
++.++.. ..+.++. .+...|.++...++|.+|-..|..+...+....++.-|...+.. ++.-+...... -
T Consensus 199 ~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~-~ 277 (445)
T 4b4t_P 199 LSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNL-Q 277 (445)
T ss_dssp HHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSST-T
T ss_pred HHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCch-H
Confidence 9998753 2344454 44566888889999999999999888753212233333221111 11111111111 1
Q ss_pred HHHHHHHHhhCCccCcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCC
Q 003918 608 RELFENAVETAPADAVKPLYLQYAKLEED--YGLAKRAMKVYDQATKAVP 655 (786)
Q Consensus 608 ~~~~~~al~~~p~~~~~~~~~~~a~~~~~--~g~~~~A~~~~~~~l~~~p 655 (786)
-....+.... +.-.....+..+..++.. ..+++...+.|...+..+|
T Consensus 278 ~~ll~~~~~~-~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~ 326 (445)
T 4b4t_P 278 NDLIHKIQND-NNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDD 326 (445)
T ss_dssp HHHHHSHHHH-SSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCC
T ss_pred HHHHHHHhhc-ccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccc
Confidence 1122222211 111134455666666654 3467777777777665554
No 247
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=92.47 E-value=2.3 Score=37.90 Aligned_cols=102 Identities=9% Similarity=0.002 Sum_probs=71.1
Q ss_pred HHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCC
Q 003918 524 LEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTK 603 (786)
Q Consensus 524 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~ 603 (786)
+....|+++.|.++.+.. +++..|..+|......|+++-|.++|.++-.. ..+.+ ++.. .|+
T Consensus 14 LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~------~~L~~-----Ly~~--tg~ 75 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSF------DKLSF-----LYLV--TGD 75 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH------HHHHH-----HHHH--HTC
T ss_pred HHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH------HHHHH-----HHHH--hCC
Confidence 445889999999887654 68899999999999999999999999987542 22222 2222 267
Q ss_pred hHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003918 604 LERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQA 650 (786)
Q Consensus 604 ~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~ 650 (786)
.+....+-+.+....-. .+-+ ..+...|++++++++|.+.
T Consensus 76 ~e~L~kla~iA~~~g~~----n~af---~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 76 VNKLSKMQNIAQTREDF----GSML---LNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHHHHTTCH----HHHH---HHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCccH----HHHH---HHHHHcCCHHHHHHHHHHC
Confidence 77777666666555432 1222 2233479999999998763
No 248
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.30 E-value=0.93 Score=50.83 Aligned_cols=57 Identities=11% Similarity=-0.136 Sum_probs=42.5
Q ss_pred HHHHHHHHHhcChhHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003918 664 EIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFA 723 (786)
Q Consensus 664 ~~~~~~~~~~~~~~~A~~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 723 (786)
...+.+....|+++-|.++-++|+.. .|. .-..|..++..|...|+++.|+-.++.+
T Consensus 341 ~~Qa~FLl~K~~~elAL~~Ak~AV~~-aPs--eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 341 NIQTNFLLNRGDYELALGVSNTSTEL-ALD--SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-CSS--CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHhc-Cch--hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 33344455677888888888888888 777 4668888888888888888888877776
No 249
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=91.72 E-value=5 Score=46.17 Aligned_cols=75 Identities=15% Similarity=0.086 Sum_probs=45.1
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChh
Q 003918 427 VAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEP 506 (786)
Q Consensus 427 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 506 (786)
...+.++.+.|..+.|.+..+ ++ .. -..+....|+++.|.++.+..
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~--------~~----~~---~f~~~l~~~~~~~A~~~~~~~------------------- 678 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP--------DQ----DQ---KFELALKVGQLTLARDLLTDE------------------- 678 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC--------CH----HH---HHHHHHHHTCHHHHHHHHTTC-------------------
T ss_pred HHHHHHHHhCCChHHheecCC--------Cc----ch---heehhhhcCCHHHHHHHHHhh-------------------
Confidence 555556666777666665442 11 10 112234567777776654321
Q ss_pred HHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003918 507 VQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERI 541 (786)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 541 (786)
++...|..++....+.|+++.|..+|.++
T Consensus 679 ------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 679 ------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp ------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 24577778888877888888888888766
No 250
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=91.21 E-value=5.1 Score=35.61 Aligned_cols=126 Identities=12% Similarity=0.152 Sum_probs=84.0
Q ss_pred HhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHH
Q 003918 472 LRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQI 551 (786)
Q Consensus 472 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 551 (786)
++.|+++.|.++.+.. ++...|..+++.....|+++-|..+|.++-.
T Consensus 16 L~lg~l~~A~e~a~~l-------------------------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-------- 62 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-------------------------NDSITWERLIQEALAQGNASLAEMIYQTQHS-------- 62 (177)
T ss_dssp HHTTCHHHHHHHHHHH-------------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------
T ss_pred HhcCCHHHHHHHHHHh-------------------------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------
Confidence 6789999999887654 3568999999999999999999999998843
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHH
Q 003918 552 IINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYA 631 (786)
Q Consensus 552 ~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a 631 (786)
+..+..+|...|+.+.-.++-+.+... -+....+..+ ++ .|++++++++|.+. +.- ... .
T Consensus 63 ~~~L~~Ly~~tg~~e~L~kla~iA~~~---g~~n~af~~~---l~----lGdv~~~i~lL~~~---~r~---~eA-~--- 122 (177)
T 3mkq_B 63 FDKLSFLYLVTGDVNKLSKMQNIAQTR---EDFGSMLLNT---FY----NNSTKERSSIFAEG---GSL---PLA-Y--- 122 (177)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHT---TCHHHHHHHH---HH----HTCHHHHHHHHHHT---TCH---HHH-H---
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHC---ccHHHHHHHH---HH----cCCHHHHHHHHHHC---CCh---HHH-H---
Confidence 334556677788877766666666553 2333333322 11 28899999998654 111 111 1
Q ss_pred HHHHHcCCHHHHHHHHHHH
Q 003918 632 KLEEDYGLAKRAMKVYDQA 650 (786)
Q Consensus 632 ~~~~~~g~~~~A~~~~~~~ 650 (786)
.+....|..+.|.++.+.+
T Consensus 123 ~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 123 AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHcCcHHHHHHHHHHh
Confidence 1222357777777776654
No 251
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=91.15 E-value=7.7 Score=44.55 Aligned_cols=97 Identities=10% Similarity=-0.045 Sum_probs=55.0
Q ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHhcCCChHHHHHH
Q 003918 82 PEYETLNNTFERALVTMHKMPRIWIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQEGIPIETSLRV 161 (786)
Q Consensus 82 ~~~~~A~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~w~~~~~~~~~~~~~~~~A~~~ 161 (786)
|+++.|.++. ...+++..|..+++.++++++++.|.++|.++-. +..+..++...++. +...++
T Consensus 666 ~~~~~A~~~~-----~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d----------~~~l~~l~~~~~~~-~~~~~~ 729 (814)
T 3mkq_A 666 GQLTLARDLL-----TDESAEMKWRALGDASLQRFNFKLAIEAFTNAHD----------LESLFLLHSSFNNK-EGLVTL 729 (814)
T ss_dssp TCHHHHHHHH-----TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC----------HHHHHHHHHHTTCH-HHHHHH
T ss_pred CCHHHHHHHH-----HhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccC----------hhhhHHHHHHcCCH-HHHHHH
Confidence 5555555543 1246778888888888888888888888887521 12222223334544 444444
Q ss_pred HHHHHccCCCCHHHHHHHHHhcCCHHHHHHHHHHH
Q 003918 162 YRRYLKYDPSHIEDFIEFLVKSKLWQEAAERLASV 196 (786)
Q Consensus 162 ~~~~l~~~p~~~~~~~~~~~~~g~~~~A~~~~~~~ 196 (786)
-+.+.. .. ....-...+...|++++|++.|.++
T Consensus 730 ~~~a~~-~~-~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 730 AKDAET-TG-KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHH-TT-CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHH-cC-chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 443333 11 2222234455567777777766555
No 252
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=90.04 E-value=3.5 Score=39.29 Aligned_cols=58 Identities=21% Similarity=0.220 Sum_probs=36.6
Q ss_pred HhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCH
Q 003918 472 LRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATP 549 (786)
Q Consensus 472 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 549 (786)
.+.|+.++|+......++..| .+...-..+..++.-.|++++|..-++.+.+.+|...
T Consensus 8 l~~g~L~~al~~~~~~VR~~P--------------------~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKASP--------------------KDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTCT--------------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred HhCCCHHHHHHHHHHHHHhCC--------------------cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 455666666666666666666 4555555566666666666666666666666666553
No 253
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.37 E-value=11 Score=38.90 Aligned_cols=88 Identities=16% Similarity=0.064 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Q 003918 517 LWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFV 596 (786)
Q Consensus 517 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~ 596 (786)
+...++..+...|++.+++..+.+++..+|-+..+|..+...+...|+..+|++.|+++...+ .
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L----------------~ 236 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTL----------------A 236 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH----------------H
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----------------H
Confidence 344556677788999999999999999999999999999999999999999999998877641 1
Q ss_pred HHhCCCChHHHHHHHHHHHhhCCc
Q 003918 597 KRYGKTKLERARELFENAVETAPA 620 (786)
Q Consensus 597 ~~~~~~~~~~A~~~~~~al~~~p~ 620 (786)
..++...-.+-+.++++.+...|.
T Consensus 237 ~eLG~~P~~~l~~l~~~il~~~~~ 260 (388)
T 2ff4_A 237 DDLGIDPGPTLRALNERILRQQPL 260 (388)
T ss_dssp HHHSCCCCHHHHHHHHHHHTTCCC
T ss_pred HHhCCCCCHHHHHHHHHHHcCCCC
Confidence 222444456666777777766554
No 254
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.32 E-value=23 Score=37.08 Aligned_cols=194 Identities=9% Similarity=-0.022 Sum_probs=113.8
Q ss_pred CChHHHHHHHHHHHhh------ccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHh-CC
Q 003918 529 GNLESTRAVYERILDL------RIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRY-GK 601 (786)
Q Consensus 529 g~~~~A~~~~~~al~~------~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~-~~ 601 (786)
|+++.|++.+...-+. .+....+...+..++...|+++...+.+.-..+..+.. ..+-..++..+.... ..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql--k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL--KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS--HHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHhcC
Confidence 4555665554322221 23456778888888888999988877766554432222 222222222222111 00
Q ss_pred CChHHHHHHHHHHHhhCC----ccC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----chhhHHHHHHH
Q 003918 602 TKLERARELFENAVETAP----ADA-----VKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNH----EKLGMYEIYIA 668 (786)
Q Consensus 602 ~~~~~A~~~~~~al~~~p----~~~-----~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~~~~~~ 668 (786)
.+.+ .......++... +.- ...+...++.++...|++.+|..++.......-.. ..+.++..-+.
T Consensus 108 ~~~d--~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~r 185 (445)
T 4b4t_P 108 KSLD--LNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 185 (445)
T ss_dssp CTTH--HHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred Cchh--HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 1111 122233333211 110 23466789999999999999999998876432211 22344444555
Q ss_pred HHHHhcChhHHHHHHHHHHHh--cCCC--hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHcc
Q 003918 669 RAAEIFGVPKTREIYEQAIES--GLPD--KDVKAMCLKYAELEKSLGEIDRARGIYVFASQF 726 (786)
Q Consensus 669 ~~~~~~~~~~A~~~~~~al~~--~~p~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 726 (786)
.+...+++.+|+.++.++... ..+. ......+...|.++...+++.+|-..|..+...
T Consensus 186 l~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 186 LSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 566789999999999997432 1222 122445666788899999999999999988764
No 255
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=86.47 E-value=15 Score=35.03 Aligned_cols=120 Identities=12% Similarity=0.017 Sum_probs=79.1
Q ss_pred HHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChH
Q 003918 526 ESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLE 605 (786)
Q Consensus 526 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 605 (786)
.+.|+.+.|+......++..|.+...-..+..++.-.|++++|.+-++-+.+. +|.....-..|-..+. -+
T Consensus 8 l~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~-------aE 78 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVK-------AA 78 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHH-------HH
T ss_pred HhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHH-------HH
Confidence 35688999999999999999999999999999999999999999999999887 6776554433322211 11
Q ss_pred HHHHHHHHHHhh--CCcc-CcHHHHHH---HHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 003918 606 RARELFENAVET--APAD-AVKPLYLQ---YAKLEEDYGLAKRAMKVYDQATKAVPNH 657 (786)
Q Consensus 606 ~A~~~~~~al~~--~p~~-~~~~~~~~---~a~~~~~~g~~~~A~~~~~~~l~~~p~~ 657 (786)
..| ++.+.- .|.- ..+.-|.. -+......|+.++|...-.++++.-|..
T Consensus 79 ~~R---~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 79 QAR---KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp HHH---HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred HHH---HHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 111 112221 1110 01122332 2223334789999999888888877753
No 256
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.08 E-value=6.2 Score=41.38 Aligned_cols=101 Identities=10% Similarity=-0.029 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-chhhHHHHHHHHHHHhcChhHHHHHHHHHHHh--cCCChh-HHHHHH
Q 003918 626 LYLQYAKLEEDYGLAKRAMKVYDQATKAVPNH-EKLGMYEIYIARAAEIFGVPKTREIYEQAIES--GLPDKD-VKAMCL 701 (786)
Q Consensus 626 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~p~~~-~~~~~~ 701 (786)
++..+|.++.+.|+++.|.+.|.++...+... ..+.++...+..+...+++..+..++.++-.. ..++.. ......
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 45667777777777777777777776655443 23455555555555667777777777776543 111111 112223
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHcc
Q 003918 702 KYAELEKSLGEIDRARGIYVFASQF 726 (786)
Q Consensus 702 ~~~~~~~~~g~~~~A~~~~~~al~~ 726 (786)
..|.++...+++..|...|-.+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 3344555667777777777666654
No 257
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=82.75 E-value=33 Score=41.07 Aligned_cols=53 Identities=13% Similarity=0.103 Sum_probs=40.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 003918 522 VDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKI 578 (786)
Q Consensus 522 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 578 (786)
+..+...|.++-++. .+...|.++..-+.+|.++...|++++|..+|+++-..
T Consensus 819 ~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~ 871 (1139)
T 4fhn_B 819 VEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLV 871 (1139)
T ss_dssp HHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCS
T ss_pred HHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 344556677766654 34566788888888999999999999999999988543
No 258
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=82.43 E-value=13 Score=38.37 Aligned_cols=63 Identities=16% Similarity=0.107 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003918 462 SIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERI 541 (786)
Q Consensus 462 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 541 (786)
.+...++..+...|++.+|+..+.+++...| -+..+|..+..++...|+..+|+..|+++
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P--------------------~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEHP--------------------YREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--------------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445567777889999999999999999999 67789999999999999999999999988
Q ss_pred Hhh
Q 003918 542 LDL 544 (786)
Q Consensus 542 l~~ 544 (786)
...
T Consensus 232 r~~ 234 (388)
T 2ff4_A 232 KTT 234 (388)
T ss_dssp HHH
T ss_pred HHH
Confidence 663
No 259
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.68 E-value=16 Score=38.57 Aligned_cols=127 Identities=12% Similarity=0.086 Sum_probs=52.7
Q ss_pred HcCChHHHHHHHHHHHh-----------hccCCHHHHHHHHHHHHHcccHHHH----------HHHHHHHHhh---cCCC
Q 003918 527 SLGNLESTRAVYERILD-----------LRIATPQIIINYALLLEEHKYFEDA----------FRVYERGVKI---FKYP 582 (786)
Q Consensus 527 ~~g~~~~A~~~~~~al~-----------~~p~~~~~~~~~~~~~~~~g~~~~A----------~~~~~~al~~---~~~p 582 (786)
..+++++|..+-...+. .++-...+|+.++.++...|+.... ...+-.+++. ..++
T Consensus 148 d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~ 227 (523)
T 4b4t_S 148 DSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDN 227 (523)
T ss_dssp -------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCSSS
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCc
Confidence 45566666655443331 1333556888888888887765432 2222222222 1233
Q ss_pred C-hHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCcc-Cc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 003918 583 H-VKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPAD-AV----KPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPN 656 (786)
Q Consensus 583 ~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~----~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~ 656 (786)
. ...+|+..+..+. ..+.+++|..+..++. .|.. .+ ....+.+|.+..-++++.+|...+..++..+|.
T Consensus 228 ~~qa~l~nllLRnYL---~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 228 ETKAMLINLILRDFL---NNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp CHHHHHHHHHHHHHH---HSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred chhHHHHHHHHHHHH---ccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 3 2345555444443 2367999999999885 5532 11 334455688888899999999999999999986
Q ss_pred Cc
Q 003918 657 HE 658 (786)
Q Consensus 657 ~~ 658 (786)
+.
T Consensus 303 ~~ 304 (523)
T 4b4t_S 303 NS 304 (523)
T ss_dssp SS
T ss_pred ch
Confidence 53
No 260
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.50 E-value=17 Score=37.97 Aligned_cols=105 Identities=11% Similarity=0.050 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhccCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHH-
Q 003918 516 RLWTFYVDLEESLGNLESTRAVYERILDLRIAT---PQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTY- 591 (786)
Q Consensus 516 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~- 591 (786)
.++..+|.++...|++++|.++|.++....... .+++....+++...+++..+...+.++........++.....+
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 456788999999999999999999999875433 4688888999999999999999999997764333333322211
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHhhCCc
Q 003918 592 LSKFVKRYGKTKLERARELFENAVETAPA 620 (786)
Q Consensus 592 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 620 (786)
......++..+++..|...|-.+......
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~ 240 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATFTS 240 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccCCc
Confidence 00111123567899999999888776443
No 261
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=76.39 E-value=12 Score=39.87 Aligned_cols=76 Identities=13% Similarity=0.132 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHH
Q 003918 516 RLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLS 593 (786)
Q Consensus 516 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~ 593 (786)
.....+|++..-....+.|+..|.+|+...|++...++.+|.+....|+.-+|+-.|-|++.. ..| .+.++.+...
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~-~~P-f~~a~~nL~~ 228 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV-KFP-FPAASTNLQK 228 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS-SBC-CHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhc-CCC-ChhHHHHHHH
Confidence 456677888888889999999999999999999999999999999999999999999999986 234 5666666443
No 262
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=76.20 E-value=12 Score=39.87 Aligned_cols=80 Identities=15% Similarity=0.112 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003918 462 SIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERI 541 (786)
Q Consensus 462 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 541 (786)
.....+|++..-...++.|..+|.+|..+.| ++...+..+|.+....|+.-.|.-.|-++
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P--------------------~~G~~~nqLavla~~~~~~l~a~y~y~rs 212 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVP--------------------SNGQPYNQLAILASSKGDHLTTIFYYCRS 212 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------------TBSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCC--------------------CCCchHHHHHHHHhcccccHHHHHHHHHH
Confidence 4556677777777888999999999999999 78899999999998899999999999999
Q ss_pred HhhccCCHHHHHHHHHHHHH
Q 003918 542 LDLRIATPQIIINYALLLEE 561 (786)
Q Consensus 542 l~~~p~~~~~~~~~~~~~~~ 561 (786)
+......+.+..++..++.+
T Consensus 213 l~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 213 IAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HSSSBCCHHHHHHHHHHHHH
T ss_pred HhcCCCChhHHHHHHHHHHH
Confidence 99877788888888776654
No 263
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=74.80 E-value=43 Score=29.24 Aligned_cols=179 Identities=14% Similarity=0.098 Sum_probs=90.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh--cCCCChHHHHHHHHHHHH
Q 003918 519 TFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKI--FKYPHVKDIWVTYLSKFV 596 (786)
Q Consensus 519 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~~~p~~~~~~~~~~~~~~ 596 (786)
..++.+..-.|.+.+++-.+.. -+.+.+..--+.+|.+..++..|+..+++.+.- -++|+- ++-.. .+
T Consensus 37 lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~-d~~~~---~f- 106 (242)
T 3kae_A 37 MLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDV-DARIQ---EM- 106 (242)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCC-CHHHH---TT-
T ss_pred hhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccc-ccccc---ee-
Confidence 3444555567887777655432 355666666677888889999999999988832 223321 11100 00
Q ss_pred HHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHH-------------
Q 003918 597 KRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMY------------- 663 (786)
Q Consensus 597 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~------------- 663 (786)
=.+|.+ -.-.+..+|.+..+.|+.++|+..|.......|--+.+...
T Consensus 107 -------------------fvd~~D-kEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~vp~~~d~~ 166 (242)
T 3kae_A 107 -------------------FVDPGD-EEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKVPQKRDKE 166 (242)
T ss_dssp -------------------SCCTTC-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCCCCCC---
T ss_pred -------------------eeccch-HHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCCCcccchH
Confidence 012331 12233345555555666666666665555544421111100
Q ss_pred HHHHH--HHHHhcChhHHH--------HHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCC
Q 003918 664 EIYIA--RAAEIFGVPKTR--------EIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPR 730 (786)
Q Consensus 664 ~~~~~--~~~~~~~~~~A~--------~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~ 730 (786)
..... .-.+...+.... ...++-.+. .|+-.+ -+.-.++..+...|..++.+.+|...... +|.
T Consensus 167 ~i~~~~~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~-iPGiGS-Y~va~aa~~yf~lg~~d~s~~lf~~lR~k-DP~ 240 (242)
T 3kae_A 167 NVRQTGRRGIEEEYVSDSIEFHESLSPSLVKKYMEH-VPGIGS-YFISNAARRYFNLGMNDKSKACFELVRRK-DPM 240 (242)
T ss_dssp --------CHHHHHHHHHHHHHHHCCHHHHHHHHTS-TTTHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STT
T ss_pred HHHhhhhccchhhhhhhHHHHHHhccHHHHHHHHHh-CCCchh-HHHHHHHHHHHhcccchhHHHHHHHHHhc-CCC
Confidence 00000 000000111111 233344444 676432 23344566778899999999999988876 664
No 264
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=74.25 E-value=27 Score=41.92 Aligned_cols=106 Identities=15% Similarity=0.120 Sum_probs=66.2
Q ss_pred CcHHHHHHHHHHHHHcCChhHHHHHHHHHHhcc-CCC--h----------------hhHHHHHHHHHHHHHhccCHHHHH
Q 003918 421 KPHTLWVAFAKLYETYKDIANARVIFDKAVQVN-YKT--V----------------DHLASIWCEWAEMELRHKNFKGAL 481 (786)
Q Consensus 421 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~--~----------------~~~~~~~~~~a~~~~~~g~~~~A~ 481 (786)
.++..-+.+|.++...|++++|..+|+++-... ..+ . ..+...|...+.+..+.|.++.++
T Consensus 840 ~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi 919 (1139)
T 4fhn_B 840 SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDAL 919 (1139)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHH
T ss_pred CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHH
Confidence 455566888999999999999999999874311 110 0 001245566666777777788888
Q ss_pred HHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003918 482 ELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERI 541 (786)
Q Consensus 482 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 541 (786)
+.-+.|++..+.+. . .....+|..+.......|++++|-.++-..
T Consensus 920 ~fa~lAi~~~~~~~---------~------~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 920 EFSLLADASKETDD---------E------DLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp HHHHHHHHHCCSCC---------H------HHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred HHHHHHHHhccCCC---------h------hhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 77777775322000 0 001236777777777778888776666433
No 265
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.54 E-value=21 Score=37.71 Aligned_cols=62 Identities=6% Similarity=0.002 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhcChhHHHHHHHHHHHhcCCC-----hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHcc
Q 003918 662 MYEIYIARAAEIFGVPKTREIYEQAIESGLPD-----KDVKAMCLKYAELEKSLGEIDRARGIYVFASQF 726 (786)
Q Consensus 662 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~p~-----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 726 (786)
++...+..+...+.++.|..+..++. .|. +......+.+|.+..-.+++.+|.+.+..|+..
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~~---fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKLE---YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHHC---SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcCc---CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 33334444444445555555554442 221 112233333444555555555555555555544
No 266
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=65.58 E-value=1.1e+02 Score=30.10 Aligned_cols=26 Identities=4% Similarity=-0.226 Sum_probs=15.5
Q ss_pred hcHHHHHHHHHHHHHcCChHHHHHHH
Q 003918 513 KSLRLWTFYVDLEESLGNLESTRAVY 538 (786)
Q Consensus 513 ~~~~~~~~~~~~~~~~g~~~~A~~~~ 538 (786)
.++.++..+|..+.+.|++.+|+.-|
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 45566666666666666666655544
No 267
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=59.22 E-value=80 Score=26.56 Aligned_cols=81 Identities=6% Similarity=-0.063 Sum_probs=47.1
Q ss_pred cCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcH
Q 003918 436 YKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSL 515 (786)
Q Consensus 436 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (786)
+|+....+..|-+. +-.+ ............+|.-++-.+++...+...+ .++
T Consensus 74 C~NlKrVi~C~~~~---n~~s-----e~vd~ALd~lv~~~KkDqLdki~~~~l~n~~--------------------~~~ 125 (172)
T 1wy6_A 74 CQNLKSVVECGVIN---NTLN-----EHVNKALDILVIQGKRDKLEEIGREILKNNE--------------------VSA 125 (172)
T ss_dssp CSCTHHHHHHHHHT---TCCC-----HHHHHHHHHHHHTTCHHHHHHHHHHHC--CC--------------------SCH
T ss_pred hhcHHHHHHHHHHh---cchH-----HHHHHHHHHHHHhccHhHHHHHHHHHhccCC--------------------CCh
Confidence 45555555555443 2222 2223333444567777777777777554443 356
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 003918 516 RLWTFYVDLEESLGNLESTRAVYERILDL 544 (786)
Q Consensus 516 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 544 (786)
.+...++..|.+.|+..+|.+++.+|-+.
T Consensus 126 ~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 126 SILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 77777777777777777777777777653
No 268
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=59.10 E-value=2.1e+02 Score=31.28 Aligned_cols=71 Identities=8% Similarity=-0.051 Sum_probs=43.3
Q ss_pred hhcCCCCHHHHHHHHHhhc-----CCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 003918 378 LRQNPHNVEQWHRRVKIFE-----GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQV 452 (786)
Q Consensus 378 l~~~p~~~~~~~~~~~~~~-----~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 452 (786)
+..+|+.+.....+..++. ++....+..|.. .| .+...-+.++......|+..+|....+++...
T Consensus 62 l~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-----~p-----~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~ 131 (618)
T 1qsa_A 62 VRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE-----KP-----GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLT 131 (618)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-----CC-----SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSC
T ss_pred HHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC-----CC-----CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Confidence 6677887766554444432 333333332221 23 56777777888888889988888888887765
Q ss_pred cCCChh
Q 003918 453 NYKTVD 458 (786)
Q Consensus 453 ~p~~~~ 458 (786)
....+.
T Consensus 132 ~~~~p~ 137 (618)
T 1qsa_A 132 GKSQPN 137 (618)
T ss_dssp SSCCCT
T ss_pred CCCCcH
Confidence 544443
No 269
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=54.56 E-value=97 Score=26.08 Aligned_cols=138 Identities=13% Similarity=0.045 Sum_probs=82.8
Q ss_pred HHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHH---hhhhhccCChh
Q 003918 430 AKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEV---RRRVAADGNEP 506 (786)
Q Consensus 430 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~ 506 (786)
|.-..-.|..++..++..+.....+.+. .-|. ..-....-+.+-..++++..=+.+.-.. .+++= .
T Consensus 14 AK~~ildG~v~qGveii~k~~~ssni~E----~NW~--ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi-----~ 82 (172)
T 1wy6_A 14 AKKFLLDGYIDEGVKIVLEITKSSTKSE----YNWF--ICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVV-----E 82 (172)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSCHHH----HTHH--HHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHH-----H
T ss_pred HHHHHHhhhHHHHHHHHHHHcCCCCccc----ccee--eeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHH-----H
Confidence 3444567888999999988887655432 2221 1111233455555555555544332110 01100 0
Q ss_pred HHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 003918 507 VQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKI 578 (786)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 578 (786)
.-.+......+.-...+....+|..++-.+++...+...+-+|.++..++..|.+.|+..+|.++..+|.+.
T Consensus 83 C~~~~n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 83 CGVINNTLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHhcchHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 000001122333333456678899898888888877767778999999999999999999999999999885
No 270
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=50.62 E-value=3.4e+02 Score=31.23 Aligned_cols=266 Identities=9% Similarity=-0.034 Sum_probs=130.2
Q ss_pred HHHHHhhcCCchhHHHHHHHHHhccCCCccCCCc--HHHHHHHHHHHHHcCChhHHHHHHHHHHhccC---C---ChhhH
Q 003918 389 HRRVKIFEGNPTKQILTYTEAVRTVDPMKAVGKP--HTLWVAFAKLYETYKDIANARVIFDKAVQVNY---K---TVDHL 460 (786)
Q Consensus 389 ~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p---~---~~~~~ 460 (786)
..+|.+..++.++++..+..-+..-.. .... ..+.+.+|.++ .|..+++...+...+..+. . +..-.
T Consensus 380 aSLGlIh~g~~~~gl~~L~~yL~~~~s---~~~~ik~GAllaLGli~--ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir 454 (963)
T 4ady_A 380 ASLGVIHKGNLLEGKKVMAPYLPGSRA---SSRFIKGGSLYGLGLIY--AGFGRDTTDYLKNIIVENSGTSGDEDVDVLL 454 (963)
T ss_dssp HHHHHHTSSCTTTHHHHHTTTSTTSCC---SCHHHHHHHHHHHHHHT--TTTTHHHHHHHHHHHHHHSSCCSCHHHHHHH
T ss_pred HHhhhhccCchHHHHHHHHHhccccCC---CcHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHcCccccccccccHHHH
Confidence 344555668888888887775421000 0012 33445555444 4444567887777775432 0 11111
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 003918 461 ASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYER 540 (786)
Q Consensus 461 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 540 (786)
..+.+.+|..+.-.++ +++...+...+..+... ....+-..+|.++...|+.+....++..
T Consensus 455 ~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~~------------------~~~~AalALGli~vGTgn~~ai~~LL~~ 515 (963)
T 4ady_A 455 HGASLGIGLAAMGSAN-IEVYEALKEVLYNDSAT------------------SGEAAALGMGLCMLGTGKPEAIHDMFTY 515 (963)
T ss_dssp HHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHH------------------HHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHH------------------HHHHHHHHHhhhhcccCCHHHHHHHHHH
Confidence 1334455554444444 46667777776544411 1123444566666677787777777777
Q ss_pred HHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChHHHHHHHHHHH---HHHhCCCChHHHHHHHHHHHhh
Q 003918 541 ILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVKDIWVTYLSKF---VKRYGKTKLERARELFENAVET 617 (786)
Q Consensus 541 al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~---~~~~~~~~~~~A~~~~~~al~~ 617 (786)
+.+...++..-...+|......|+.+.+-.+.+..... ++ +. ..|+..+ +...+.|+......+++.+.+.
T Consensus 516 ~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~---~d-p~--vRygaa~alglAyaGTGn~~aIq~LL~~~~~d 589 (963)
T 4ady_A 516 SQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS---DE-SL--LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD 589 (963)
T ss_dssp HHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC---SC-HH--HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC
T ss_pred HhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC---CC-HH--HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC
Confidence 76532222111223333344567777776666665553 22 21 2222221 2223778877777788888765
Q ss_pred CCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhcC-hhHHHHHHHHHHH
Q 003918 618 APADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHEKLGMYEIYIARAAEIFG-VPKTREIYEQAIE 688 (786)
Q Consensus 618 ~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~ 688 (786)
..++....+...+|.+ ..|+.+.+..++....+.. ++.+.....+..-....|+ ..++...+.+...
T Consensus 590 ~~d~VRraAViaLGlI--~~g~~e~v~rlv~~L~~~~--d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 590 SNDDVRRAAVIALGFV--LLRDYTTVPRIVQLLSKSH--NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp SCHHHHHHHHHHHHHH--TSSSCSSHHHHTTTGGGCS--CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHhh--ccCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 3331111122233322 2455554555554443322 2233222222211112233 3567888888764
No 271
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=39.76 E-value=2.9e+02 Score=27.29 Aligned_cols=236 Identities=13% Similarity=0.097 Sum_probs=0.0
Q ss_pred hhhhHHHHHHhHhcccc---cCccchHHHHHHHHHhhhhhchhhhhhhhhhcCCCCHHHHHHHHHhhcCCchhHHHHHHH
Q 003918 332 VNLSMAEFVKKVLNGFW---LHDVKDVDLRLARLEHLMNRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPTKQILTYTE 408 (786)
Q Consensus 332 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~a~~~~~~ 408 (786)
+...++.++.++..+.+ ++....+-....+|-.. +++++|++++-.
T Consensus 12 ~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~-------------------------------k~y~eAidLL~~ 60 (336)
T 3lpz_A 12 IERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQ-------------------------------GNWAAAVDILAS 60 (336)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHT-------------------------------TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhh-------------------------------cCHHHHHHHHHH
Q ss_pred HHhccCCCccCCCcHHHHHHHHHHHHHcC--ChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 003918 409 AVRTVDPMKAVGKPHTLWVAFAKLYETYK--DIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRR 486 (786)
Q Consensus 409 al~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 486 (786)
+...+-..+....-.++-..+.+.|.+.+ --++.+.-+-+++...|... .-...+ .++|+++-.+
T Consensus 61 GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~----p~r~~f---------i~~ai~WS~~ 127 (336)
T 3lpz_A 61 VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGE----PVRKRF---------VKEMIDWSKK 127 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTC----HHHHHH---------HHHHHHHHHH
T ss_pred HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCC----cHHHHH---------HHHHHHHHhh
Q ss_pred HhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHH----------------HHHHHHhhccCCHH
Q 003918 487 ATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRA----------------VYERILDLRIATPQ 550 (786)
Q Consensus 487 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~----------------~~~~al~~~p~~~~ 550 (786)
.-..+. .++.+...+|..+.+.+++.+|+. +++-..+..|..+.
T Consensus 128 ~g~~~~--------------------Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~d 187 (336)
T 3lpz_A 128 FGDYPA--------------------GDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTAP 187 (336)
T ss_dssp HSSCTT--------------------CCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGHH
T ss_pred cCCCCC--------------------CCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccHH
Q ss_pred HHHHHHHH-HHHcccHHHHHHHHHHHHhhcC--------------------CCChHHHHHHHHHHHHHHhCCC---ChHH
Q 003918 551 IIINYALL-LEEHKYFEDAFRVYERGVKIFK--------------------YPHVKDIWVTYLSKFVKRYGKT---KLER 606 (786)
Q Consensus 551 ~~~~~~~~-~~~~g~~~~A~~~~~~al~~~~--------------------~p~~~~~~~~~~~~~~~~~~~~---~~~~ 606 (786)
++...+-+ |...|+...|..++..-+.... .|..+. .+++..+...+..+ .+..
T Consensus 188 lfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PL--LNFl~lLllt~q~~~~~lF~~ 265 (336)
T 3lpz_A 188 LYCARAVLPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPL--LNFISMLLLSVQKGSPDLFRQ 265 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHH--HHHHHHHHHHHHSCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCch--HHHHHHHHHHHhcCCHHHHHH
Q ss_pred HHHHHHHHHhhCC-ccCcHHHHHHHHHHHH
Q 003918 607 ARELFENAVETAP-ADAVKPLYLQYAKLEE 635 (786)
Q Consensus 607 A~~~~~~al~~~p-~~~~~~~~~~~a~~~~ 635 (786)
.++-|+..++.+| . -......++.+|+
T Consensus 266 L~~~Y~~~l~rd~~~--~~~~L~~IG~~YF 293 (336)
T 3lpz_A 266 LKSKYEANLNELNGI--WDTALELIAEMYF 293 (336)
T ss_dssp HHHHTHHHHHTTTTT--THHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcHHH--HHHHHHHHHHHHc
No 272
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=38.69 E-value=59 Score=23.85 Aligned_cols=37 Identities=11% Similarity=0.198 Sum_probs=29.0
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHhhccCchhcHHHHH
Q 003918 253 TSLADYYIRRELFEKARDIFEEGMMTVVTVRDFSVIF 289 (786)
Q Consensus 253 ~~la~~y~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 289 (786)
..+|..+...|++++|...|-+|+...|+..++..++
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i~ 57 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVL 57 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4567778889999999999999999888776543333
No 273
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=37.59 E-value=5.3e+02 Score=29.70 Aligned_cols=26 Identities=12% Similarity=0.063 Sum_probs=21.9
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHhh
Q 003918 252 WTSLADYYIRRELFEKARDIFEEGMM 277 (786)
Q Consensus 252 ~~~la~~y~~~g~~~~A~~~~~~al~ 277 (786)
|....++..+.++.+.+.++|.+.+.
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 56667788889999999999999874
No 274
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=36.29 E-value=1.6e+02 Score=25.55 Aligned_cols=59 Identities=7% Similarity=0.030 Sum_probs=43.0
Q ss_pred HHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHH------HHHhccCHHHHHHHHHHHhc
Q 003918 430 AKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAE------MELRHKNFKGALELMRRATA 489 (786)
Q Consensus 430 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~------~~~~~g~~~~A~~~~~~al~ 489 (786)
+..+...|+|=+|-++++.+....+..... ..+|..+++ .+.+.||...|..++.+++.
T Consensus 39 ~i~lFn~g~yfeaHEvLEe~W~~~~~~~~e-r~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 39 GVRLYNSGEFHESHDCFEDEWYNYGRGNTE-SKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTTCSSSHH-HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCchHHHHHHHHHHHhcCCCchH-HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 334556699999999999999876654111 244444444 56789999999999999975
No 275
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=34.46 E-value=2.4e+02 Score=24.72 Aligned_cols=28 Identities=18% Similarity=0.069 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhh
Q 003918 551 IIINYALLLEEHKYFEDAFRVYERGVKI 578 (786)
Q Consensus 551 ~~~~~~~~~~~~g~~~~A~~~~~~al~~ 578 (786)
.+..+|.+..+.|+.++|+..|.+....
T Consensus 116 Fy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 116 FESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 3445566666666666666666666654
No 276
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=32.60 E-value=61 Score=24.47 Aligned_cols=17 Identities=24% Similarity=0.165 Sum_probs=8.9
Q ss_pred HcCChHHHHHHHHHHHc
Q 003918 709 SLGEIDRARGIYVFASQ 725 (786)
Q Consensus 709 ~~g~~~~A~~~~~~al~ 725 (786)
+.|++++|..+|..|++
T Consensus 31 ~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 31 KEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHH
Confidence 44555555555555544
No 277
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=32.42 E-value=3.3e+02 Score=31.56 Aligned_cols=122 Identities=9% Similarity=0.013 Sum_probs=70.0
Q ss_pred CChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc-hhhHHHHHHHHHHHhcChhHHH
Q 003918 602 TKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNHE-KLGMYEIYIARAAEIFGVPKTR 680 (786)
Q Consensus 602 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~~~~~~~~~~~~~~~~A~ 680 (786)
|.++-|++ .+.-.|. ++..-+..|.++...|++++|..+|+++-.-...+. ...... ...
T Consensus 824 ~~~~~a~e----L~~~~~~--t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~-------------~~~ 884 (950)
T 4gq2_M 824 KQYNACMQ----LIGWLNS--DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLR-------------EFQ 884 (950)
T ss_dssp TCHHHHHH----HGGGCCS--SHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGH-------------HHH
T ss_pred cHHHHHHH----HHhhcCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchh-------------hhh
Confidence 55655544 3344555 333446678888888888888888887643221111 110000 000
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHcCChHHHHHHHHHHHccCCCCCCH----HHHHHHHHHHHHcC
Q 003918 681 EIYEQAIESGLPDKDVKAMCLKYAELEKSLGEIDRARGIYVFASQFADPRSDT----EFWNRWHEFEVNHG 747 (786)
Q Consensus 681 ~~~~~al~~~~p~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~p~~~~----~~~~~~~~~~~~~G 747 (786)
. .+..-.++......|++.+.++.+.|-++.+...-..|++...++ +. ++|..+.......|
T Consensus 885 ~----ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~d-d~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 885 E----IAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETD-DEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp H----HHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSC-CHHHHHHHHHHHHHHHHHHC
T ss_pred h----ccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccC-CccchHHHHHHHHHHHhhCC
Confidence 0 111102222234588899999999999999999999999864444 44 45555554444333
No 278
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=31.17 E-value=3.7e+02 Score=31.17 Aligned_cols=113 Identities=11% Similarity=0.060 Sum_probs=71.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhhcCCCChH-HHHHHHHHHHHHHh
Q 003918 521 YVDLEESLGNLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFRVYERGVKIFKYPHVK-DIWVTYLSKFVKRY 599 (786)
Q Consensus 521 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~p~~~-~~~~~~~~~~~~~~ 599 (786)
++..+...|.++-|++ .+...|.++-.-+.+|.++...|++++|..+|++|-.-+..+... ..-.. ...+..
T Consensus 816 l~~~L~~~~~~~~a~e----L~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~-~~~ll~-- 888 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLRE-FQEIAE-- 888 (950)
T ss_dssp HHHHHHHTTCHHHHHH----HGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHH-HHHHHH--
T ss_pred HHHHHHHhcHHHHHHH----HHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhh-hhhccC--
Confidence 3444556777765543 556678888777888999999999999999999886543222110 00000 000100
Q ss_pred CCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 003918 600 GKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPN 656 (786)
Q Consensus 600 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~ 656 (786)
...++......|.+.+.+..+.|-++.++...+.+++....
T Consensus 889 ----------------~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~ 929 (950)
T 4gq2_M 889 ----------------KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKET 929 (950)
T ss_dssp ----------------HTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCS
T ss_pred ----------------cccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccc
Confidence 01111112347778888888999999999999999976543
No 279
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=31.03 E-value=66 Score=24.25 Aligned_cols=17 Identities=24% Similarity=0.274 Sum_probs=7.9
Q ss_pred HcCChHHHHHHHHHHHc
Q 003918 709 SLGEIDRARGIYVFASQ 725 (786)
Q Consensus 709 ~~g~~~~A~~~~~~al~ 725 (786)
+.|++++|..+|..+++
T Consensus 23 ~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 23 KEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHH
Confidence 33444444444444443
No 280
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=30.18 E-value=49 Score=34.77 Aligned_cols=283 Identities=14% Similarity=0.084 Sum_probs=0.0
Q ss_pred CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccCHHHHHHHHHHHhcCCchHHhhhh
Q 003918 420 GKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKNFKGALELMRRATAEPSVEVRRRV 499 (786)
Q Consensus 420 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 499 (786)
.+++..|......+...++|.-|.-+--.++- .|+.. -.+...|...|.+++-+.+++.++....
T Consensus 196 Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv-hadeL-------~elv~~YE~~G~f~ELIsLlEaglglEr------- 260 (624)
T 3lvg_A 196 ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-HADEL-------EELINYYQDRGYFEELITMLEAALGLER------- 260 (624)
T ss_dssp CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-CSSCC-------SGGGSSSSTTCCCTTSTTTHHHHTTSTT-------
T ss_pred cCChhHHHHHHHHHhCchHHHHHHHhcchhcc-cHHHH-------HHHHHHHHhCCCHHHHHHHHHHHhCCCc-------
Q ss_pred hccCChhHHHHhhhcHHHHHHHHHHHHHcC---------------ChHHHHHHHHHHHhhccCCHHHHHHHHHHHHHccc
Q 003918 500 AADGNEPVQMKLHKSLRLWTFYVDLEESLG---------------NLESTRAVYERILDLRIATPQIIINYALLLEEHKY 564 (786)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---------------~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~ 564 (786)
-...++..+|.+|.+.. +..+.+.+.+++.- |..+..+|.+-..
T Consensus 261 -------------AHmGmFTELaILYsKY~PeKlmEHlklf~sriNipKviracE~ahL--------W~ElvfLY~~ydE 319 (624)
T 3lvg_A 261 -------------AHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHL--------WAELVFLYDKYEE 319 (624)
T ss_dssp -------------CCHHHHHHHHHHHHSSCTTHHHHHHTTSSSSSCCTTTHHHHTTTTC--------HHHHHHHHHHHTC
T ss_pred -------------hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccHHHHHHHHHHHhh--------HHHHHHHHhcchh
Q ss_pred HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHHHHHHcCCHHHHH
Q 003918 565 FEDAFRVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAKLEEDYGLAKRAM 644 (786)
Q Consensus 565 ~~~A~~~~~~al~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~~~~~~g~~~~A~ 644 (786)
++.| ++.. -...+.+|.. ..+...-....+.+---+...=.++..|. +...+-......=+..+++
T Consensus 320 ~DnA------~ltM--i~h~~~Aw~h-~~Fkdii~KVaN~EiyYKAi~FYL~e~P~-----lL~DLL~vL~prlDh~RvV 385 (624)
T 3lvg_A 320 YDNA------IITM--MNHPTDAWKE-GQFKDIITKVANVELYYRAIQFYLEFKPL-----LLNDLLMVLSPRLDHTRAV 385 (624)
T ss_dssp HHHH------HHTT--TSCHHHHCCG-GGGTTTGGGCSCSHHHHHHHHHHTTSCCT-----TSHHHHHHHCTTCCSTTTH
T ss_pred HHHH------HHHH--HhCChhhccH-HHHHHHHHHcchHHHHHHHHHHHHHhChH-----HHHHHHHhccccCChHHHH
Q ss_pred HHHHHH---------HhcCCCCchhhHHHHHHHHHHHhcChhHHH-----------HHHHHHHHhcCCChhHHHHHHHHH
Q 003918 645 KVYDQA---------TKAVPNHEKLGMYEIYIARAAEIFGVPKTR-----------EIYEQAIESGLPDKDVKAMCLKYA 704 (786)
Q Consensus 645 ~~~~~~---------l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~-----------~~~~~al~~~~p~~~~~~~~~~~~ 704 (786)
+++++. +...-+.....+..++-..+....|++.-| --+-.-++. .+- ...-.--+
T Consensus 386 ~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEk-HeL---~eFRrIAA 461 (624)
T 3lvg_A 386 NYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEK-HEL---IEFRRIAA 461 (624)
T ss_dssp HHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHT-CSS---HHHHHHHH
T ss_pred HHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhh-Cch---HHHHHHHH
Q ss_pred HHHHHcCChHHHHH------HHHHHHccCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003918 705 ELEKSLGEIDRARG------IYVFASQFADPRSDTEFWNRWHEFEVNHGNEDTFREML 756 (786)
Q Consensus 705 ~~~~~~g~~~~A~~------~~~~al~~~~p~~~~~~~~~~~~~~~~~G~~~~a~~~~ 756 (786)
.+|.+.+++.++.+ .|..|++......+.++-..+.++....|+.+-...++
T Consensus 462 ~LYkkn~rw~qsi~l~KkDklykDAietAa~S~~~elaeeLL~yFv~~g~~EcF~a~L 519 (624)
T 3lvg_A 462 YLFKGNNRWKQSVELCKKDSLYKDAMQYASESKDTELAEELLQWFLQEEKRECFGACL 519 (624)
T ss_dssp HHHHTTCHHHHHSSCSSTTCCTTGGGTTTTTCCCTTHHHHHHHHHHHHCSTHHHHHHH
T ss_pred HHHHhcccHHHHHHHHHhcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHH
No 281
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=27.93 E-value=1.3e+02 Score=22.02 Aligned_cols=31 Identities=10% Similarity=0.033 Sum_probs=24.8
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhccCCCh
Q 003918 427 VAFAKLYETYKDIANARVIFDKAVQVNYKTV 457 (786)
Q Consensus 427 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 457 (786)
..+|..+...|++++|...|-+|+...|.-.
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~ 51 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQ 51 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHH
Confidence 5567777888889999998999998887653
No 282
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=27.59 E-value=89 Score=24.27 Aligned_cols=34 Identities=12% Similarity=0.180 Sum_probs=26.9
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHhhccCchhcHH
Q 003918 253 TSLADYYIRRELFEKARDIFEEGMMTVVTVRDFS 286 (786)
Q Consensus 253 ~~la~~y~~~g~~~~A~~~~~~al~~~p~~~~~~ 286 (786)
..+|..+...|+++.|...|-+|+...|...++.
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~LL 57 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLL 57 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 4567777788999999999999999888765533
No 283
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=27.13 E-value=2e+02 Score=21.59 Aligned_cols=19 Identities=16% Similarity=0.464 Sum_probs=10.4
Q ss_pred HHcccHHHHHHHHHHHHhh
Q 003918 560 EEHKYFEDAFRVYERGVKI 578 (786)
Q Consensus 560 ~~~g~~~~A~~~~~~al~~ 578 (786)
.+.|++++|+.+|..+++.
T Consensus 30 D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 30 DKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHH
Confidence 3455556666555555553
No 284
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=26.50 E-value=6.5e+02 Score=27.32 Aligned_cols=206 Identities=12% Similarity=0.043 Sum_probs=103.3
Q ss_pred CCchhHHHHHHHHHhccCCCccCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhccC
Q 003918 397 GNPTKQILTYTEAVRTVDPMKAVGKPHTLWVAFAKLYETYKDIANARVIFDKAVQVNYKTVDHLASIWCEWAEMELRHKN 476 (786)
Q Consensus 397 ~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~~~~~g~ 476 (786)
.+++.|...+....+...- ........+..++.-....+...++...+.+.....+ +. .+.-..+...++.|+
T Consensus 228 ~d~~~A~~~~~~~~~~~~~--~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~e~~~r~Alr~~d 300 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQL--NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ-ST----SLIERRVRMALGTGD 300 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC-CH----HHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHhhhhccCC--CHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCC-Ch----HHHHHHHHHHHHCCC
Confidence 5677788887775432111 0011112222233222334435567777777654333 22 222233444566788
Q ss_pred HHHHHHHHHHHhcCCchHHhhhhhccCChhHHHHhhhcHHHHHHHHHHHHHcCChHHHHHHHHHHHhhccCCHHHHHHHH
Q 003918 477 FKGALELMRRATAEPSVEVRRRVAADGNEPVQMKLHKSLRLWTFYVDLEESLGNLESTRAVYERILDLRIATPQIIINYA 556 (786)
Q Consensus 477 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 556 (786)
++.|...|.++-...... .....|. +..+...|+.++|..+|+++.. +.+ .|-.++
T Consensus 301 ~~~a~~~~~~l~~~~~~~------------------~r~~YW~--~ra~~~~g~~~~a~~~~~~~a~--~~~--fYg~lA 356 (618)
T 1qsa_A 301 RRGLNTWLARLPMEAKEK------------------DEWRYWQ--ADLLLERGREAEAKEILHQLMQ--QRG--FYPMVA 356 (618)
T ss_dssp HHHHHHHHHHSCTTGGGS------------------HHHHHHH--HHHHHHTTCHHHHHHHHHHHHT--SCS--HHHHHH
T ss_pred HHHHHHHHHHcccccccc------------------HhHHHHH--HHHHHHcCCHHHHHHHHHHHhc--CCC--hHHHHH
Confidence 888888887765433200 1224555 5566778898899998888875 222 222222
Q ss_pred HHHHHcccHHHHHHHHHHHHhhcCCCCh----HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhhCCccCcHHHHHHHHH
Q 003918 557 LLLEEHKYFEDAFRVYERGVKIFKYPHV----KDIWVTYLSKFVKRYGKTKLERARELFENAVETAPADAVKPLYLQYAK 632 (786)
Q Consensus 557 ~~~~~~g~~~~A~~~~~~al~~~~~p~~----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~a~ 632 (786)
..+.|..-. ... ......+.. ...... +..+. ..|....|+..+...+...+. .-...++.
T Consensus 357 --a~~Lg~~~~-~~~----~~~~~~~~~~~~~~~~~~r-~~~L~---~~g~~~~a~~ew~~~~~~~~~----~~~~~la~ 421 (618)
T 1qsa_A 357 --AQRIGEEYE-LKI----DKAPQNVDSALTQGPEMAR-VRELM---YWNLDNTARSEWANLVKSKSK----TEQAQLAR 421 (618)
T ss_dssp --HHHTTCCCC-CCC----CCCCSCCCCHHHHSHHHHH-HHHHH---HTTCHHHHHHHHHHHHTTCCH----HHHHHHHH
T ss_pred --HHHcCCCCC-CCC----CCCChhHHhhhccChHHHH-HHHHH---HCCChhhHHHHHHHHHhcCCH----HHHHHHHH
Confidence 122332100 000 000000000 011111 11222 347788888888887765432 23345677
Q ss_pred HHHHcCCHHHHHHHHH
Q 003918 633 LEEDYGLAKRAMKVYD 648 (786)
Q Consensus 633 ~~~~~g~~~~A~~~~~ 648 (786)
+....|.+..++....
T Consensus 422 ~a~~~~~~~~~v~~~~ 437 (618)
T 1qsa_A 422 YAFNNQWWDLSVQATI 437 (618)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHCCChHHHHHHHH
Confidence 7777888887765554
No 285
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=24.71 E-value=1.6e+02 Score=21.40 Aligned_cols=41 Identities=15% Similarity=0.185 Sum_probs=26.2
Q ss_pred HHHHHHHHHhcCCC-HHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Q 003918 88 NNTFERALVTMHKM-PRIWIMYLETLTSQKFITKARRTFDRALC 130 (786)
Q Consensus 88 ~~~~~~al~~~p~~-~~~w~~~~~~~~~~~~~~~A~~~~~~al~ 130 (786)
.+.|++||...|.. ++-|...+.+. .+...+.++.|+....
T Consensus 16 ~k~fe~al~~~p~~t~~RW~~IA~~l--gRt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 16 LSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQLKD 57 (72)
T ss_dssp HHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCcHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 36777777777743 46787777774 4556666666655544
No 286
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=24.40 E-value=2.2e+02 Score=21.25 Aligned_cols=19 Identities=21% Similarity=0.548 Sum_probs=10.9
Q ss_pred HHcccHHHHHHHHHHHHhh
Q 003918 560 EEHKYFEDAFRVYERGVKI 578 (786)
Q Consensus 560 ~~~g~~~~A~~~~~~al~~ 578 (786)
.+.|++++|+.+|..+++.
T Consensus 22 D~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 22 DKEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHH
Confidence 3455666666666655553
No 287
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=23.34 E-value=5.1e+02 Score=25.29 Aligned_cols=28 Identities=7% Similarity=-0.191 Sum_probs=22.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 003918 629 QYAKLEEDYGLAKRAMKVYDQATKAVPN 656 (786)
Q Consensus 629 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~ 656 (786)
.-...-++.+++..|..+-++.|+..|.
T Consensus 212 ~AM~~a~K~KNy~tAa~fArrLLel~p~ 239 (325)
T 3mv2_A 212 VAMSQHFKHKNFLQASYFAGEFLKIISS 239 (325)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 3444556789999999999999998885
No 288
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.59 E-value=2.7e+02 Score=28.30 Aligned_cols=58 Identities=10% Similarity=0.039 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHcc------CCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003918 698 AMCLKYAELEKSLGEIDRARGIYVFASQF------ADPRSDTEFWNRWHEFEVNHGNEDTFREM 755 (786)
Q Consensus 698 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~------~~p~~~~~~~~~~~~~~~~~G~~~~a~~~ 755 (786)
.+....+..+...|+.+.|+.+++++-.. .+|.....++...+.++...|++..+...
T Consensus 128 ~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~ 191 (393)
T 4b4t_O 128 LIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYT 191 (393)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 44555566666677777777777766532 12222345666666666777776665443
No 289
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=22.23 E-value=74 Score=23.69 Aligned_cols=25 Identities=16% Similarity=0.133 Sum_probs=0.0
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHhh
Q 003918 253 TSLADYYIRRELFEKARDIFEEGMM 277 (786)
Q Consensus 253 ~~la~~y~~~g~~~~A~~~~~~al~ 277 (786)
..+|+-|...|+|+.|+.+|+.++.
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHH
No 290
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=22.12 E-value=5.5e+02 Score=24.95 Aligned_cols=62 Identities=8% Similarity=-0.123 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHH----------------cc--CCCCCCHHHHHH-HHHHHHHcCCHHHHHHHH
Q 003918 696 VKAMCLKYAELEKSLGEIDRARGIYVFAS----------------QF--ADPRSDTEFWNR-WHEFEVNHGNEDTFREML 756 (786)
Q Consensus 696 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al----------------~~--~~p~~~~~~~~~-~~~~~~~~G~~~~a~~~~ 756 (786)
++..+..+|..+.+.|++.+|...|-.+- +. +.|. ..+++.. .+--+...||...|..++
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~-e~dlf~~RaVL~yL~l~n~~~A~~~~ 211 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDS-TVAEFFSRLVFNYLFISNISFAHESK 211 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHH-HHHHHHHHHHHHHHHTTBHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcc-hHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 45566666666666666666666553211 00 1222 2333322 333466778999988888
Q ss_pred HH
Q 003918 757 RI 758 (786)
Q Consensus 757 ~~ 758 (786)
..
T Consensus 212 ~~ 213 (312)
T 2wpv_A 212 DI 213 (312)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 291
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=22.09 E-value=3.7e+02 Score=24.46 Aligned_cols=109 Identities=14% Similarity=0.110 Sum_probs=63.1
Q ss_pred cCChhhHHHHHHHHHHhCCCCHH-H--HHHHHHHHHHhcc-CCC----C----CchhHHHHHHHHHHHHHhcCCCHHH--
Q 003918 39 EAPFKKRFVIYERALKALPGSYK-L--WHAYLIERLSIVK-NLP----I----THPEYETLNNTFERALVTMHKMPRI-- 104 (786)
Q Consensus 39 ~~~~~~~~~~~~~al~~~P~~~~-~--w~~~~~~~~~~~~-~~~----~----~~~~~~~A~~~~~~al~~~p~~~~~-- 104 (786)
.+++++.+.+.+-.+ -.|-+.. . -..++--++.++. +.+ + ..-=.+.|..+++..-+-.|-...+
T Consensus 32 ~~dFrq~rdi~eall-~~~l~~~~~~~k~iri~QfLsRI~eG~~LD~~Fd~~~~lTPLESAl~v~~~I~~e~~l~~~l~e 110 (235)
T 3bu8_A 32 YGDFRQIRDIMQALL-VRPLGKEHTVSRLLRVMQCLSRIEEGENLDCSFDMEAELTPLESAINVLEMIKTEFTLTEAVVE 110 (235)
T ss_dssp HHHHHHHHHHHHHHT-TSCCCCCHHHHHHHHHHHHHHHHHTTTCTTEECSSSTTCCHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHH-hCcccccccchhHHHHHHHHHHHHcCCCCCcccCCCCCCChHHHHHHHHHHHHHhhcCcHHHHH
Confidence 346778888864444 3444332 2 2333333333322 222 1 1122678888888877766533322
Q ss_pred ------HHHHHHHHHcCCcHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHh
Q 003918 105 ------WIMYLETLTSQKFITKARRTFDRALCALPVTQHDRIWEIYLRFVEQ 150 (786)
Q Consensus 105 ------w~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~w~~~~~~~~~ 150 (786)
-.....+++++|.+++|..++++....+|++ ..+-..++.+..+
T Consensus 111 ~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~--~kLr~kL~~II~~ 160 (235)
T 3bu8_A 111 SSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTT--QKLRNDLLNIIRE 160 (235)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGG--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCc--hHHHHHHHHHHhc
Confidence 3456677789999999999999999876653 4454555544443
No 292
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=21.60 E-value=3.9e+02 Score=23.03 Aligned_cols=57 Identities=4% Similarity=0.004 Sum_probs=36.9
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCC-chhhHHHHHHH-H-----HHHhcChhHHHHHHHHHHHh
Q 003918 633 LEEDYGLAKRAMKVYDQATKAVPNH-EKLGMYEIYIA-R-----AAEIFGVPKTREIYEQAIES 689 (786)
Q Consensus 633 ~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~~~~~~-~-----~~~~~~~~~A~~~~~~al~~ 689 (786)
.++..|++=+|.++++......+.. ..-.++.+++. . ..+.|+..-|+.++.+++..
T Consensus 41 ~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 41 RLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3344588888888888888776543 13445555554 2 34567777788888887764
No 293
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=20.16 E-value=1.3e+02 Score=23.11 Aligned_cols=13 Identities=15% Similarity=0.286 Sum_probs=7.0
Q ss_pred hHHHHHHHHHHHh
Q 003918 677 PKTREIYEQAIES 689 (786)
Q Consensus 677 ~~A~~~~~~al~~ 689 (786)
++|..++.+|++.
T Consensus 13 ~~Ai~lv~~Ave~ 25 (93)
T 1wfd_A 13 TAAVAVLKRAVEL 25 (93)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4555555555544
Done!