BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 003920
         (786 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P54697|MYOJ_DICDI Myosin-J heavy chain OS=Dictyostelium discoideum GN=myoJ PE=4 SV=2
          Length = 2245

 Score = 37.0 bits (84), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 26/46 (56%)

Query: 627  EMLADNYTRKEVCPTFGAPLIKRVLNNFVPDEFNPDPISPSVFEAL 672
            E + D+  RK+ CPT  +  +K+VL+ F P EF    +S  V  ++
Sbjct: 2137 EKIIDDKIRKQYCPTLNSNQLKQVLSLFSPGEFGGKRVSAKVIASI 2182


>sp|A2QUS7|RPC3_ASPNC DNA-directed RNA polymerase III subunit rpc3 OS=Aspergillus niger
           (strain CBS 513.88 / FGSC A1513) GN=rpc82 PE=3 SV=1
          Length = 627

 Score = 33.9 bits (76), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 47/117 (40%), Gaps = 18/117 (15%)

Query: 658 EFNPDPISPSVFEAL-------------DSEVPCEDEEGSLTSFPCMATPTVYSPAPAAS 704
           E N  P++  V+E L              +E+P E EEG   S P   +       P   
Sbjct: 321 EMNSSPVTAQVYEGLLRRIEYQTKQCRDSAEIPREGEEGEQYSVPIALSAVTEEVDPQLD 380

Query: 705 LSGIVGEVG-NQALQRSGSTVLRKSYT-SDDELDELDSSITSIIADNSHPSPLSAAP 759
           L+G +G +  +QA+ + G   L  S   +D E  E  S    +   + H S LS  P
Sbjct: 381 LAGSIGPMEISQAINKRGKRPLEDSVNGTDREGSEAPSRTYEV---DQHLSLLSQPP 434


>sp|Q93PU4|TTGH_PSEPU Toluene efflux pump membrane transporter TtgH OS=Pseudomonas putida
           GN=ttgH PE=2 SV=2
          Length = 1049

 Score = 33.5 bits (75), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 9/68 (13%)

Query: 105 LEDSLINLEDARITGRRGKNGLDVVGAG-SSNIGILEYKEKKEQHGNGQD--------NQ 155
           + D L N E A +      NG +  G G +S + ++ +K+ KE+HG GQD        NQ
Sbjct: 593 VRDYLANDEGALVEHFMTVNGFNFAGRGQNSGLVLITFKDWKERHGAGQDVFSIAQRANQ 652

Query: 156 NFEVKKNS 163
           +F   K++
Sbjct: 653 HFAKIKDA 660


>sp|O31100|SRPB_PSEPU Solvent-resistant pump membrane transporter SrpB OS=Pseudomonas
           putida GN=srpB PE=2 SV=1
          Length = 1049

 Score = 33.5 bits (75), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 9/68 (13%)

Query: 105 LEDSLINLEDARITGRRGKNGLDVVGAG-SSNIGILEYKEKKEQHGNGQD--------NQ 155
           + D L N E A +      NG +  G G +S + ++ +K+ KE+HG GQD        NQ
Sbjct: 593 VRDYLANDEGALVEHFMTVNGFNFAGRGQNSGLVLITFKDWKERHGAGQDVFSIAQRANQ 652

Query: 156 NFEVKKNS 163
           +F   K++
Sbjct: 653 HFAKIKDA 660


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.131    0.377 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 303,229,062
Number of Sequences: 539616
Number of extensions: 13499812
Number of successful extensions: 28128
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 28103
Number of HSP's gapped (non-prelim): 59
length of query: 786
length of database: 191,569,459
effective HSP length: 126
effective length of query: 660
effective length of database: 123,577,843
effective search space: 81561376380
effective search space used: 81561376380
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 65 (29.6 bits)