Query 003920
Match_columns 786
No_of_seqs 49 out of 51
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 08:19:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003920.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003920hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f6h_X Myosin-2, type V myosin 99.2 6.6E-11 2.3E-15 125.3 12.2 290 301-674 44-346 (419)
2 3mmi_A Myosin-4; globular tail 98.9 2.4E-08 8.3E-13 106.2 14.9 306 267-675 17-331 (386)
3 2lme_A Adhesin YADA; trimeric 26.9 42 0.0014 29.8 3.2 33 261-293 13-45 (105)
4 3j27_B Matrix protein, small e 17.8 65 0.0022 27.8 2.4 21 414-434 17-37 (75)
5 1p58_D Envelope protein M; fla 16.2 63 0.0022 27.9 1.9 22 413-434 16-37 (75)
6 1zme_C Proline utilization tra 15.9 1E+02 0.0035 24.1 3.0 19 266-284 46-64 (70)
7 4b2v_A S64; toxin, ICK; NMR {S 12.9 53 0.0018 24.4 0.5 7 657-663 7-13 (32)
8 1y2y_A Ribosome biogenesis pro 12.7 31 0.0011 28.9 -0.9 24 634-658 16-39 (58)
9 3ic3_A Putative pyruvate dehyd 12.4 1E+02 0.0034 28.2 2.2 42 544-585 1-59 (101)
10 3k1t_A Glutamate--cysteine lig 12.1 1.6E+02 0.0055 32.5 4.1 121 421-559 21-150 (432)
No 1
>2f6h_X Myosin-2, type V myosin; mysoin V, cargo binding, cargo transport, vacuole binding, secreatory vescIle binding, structural protein; 2.25A {Saccharomyces cerevisiae}
Probab=99.19 E-value=6.6e-11 Score=125.32 Aligned_cols=290 Identities=16% Similarity=0.207 Sum_probs=191.6
Q ss_pred ccCcCchhhhhhHHHHHHhhccchhhHHHHHhhhhcceEEEeecc-cCC-CCcchhhhhhHHHHHHHH--HHHhcCCCCC
Q 003920 301 TSKVHTPARRLCRFYFHACRAMSKAKRASAARTAISGLVLVSKAC-GND-VPRLTFWLSNTVLLRAIV--SHAIGGMQLS 376 (786)
Q Consensus 301 ~hKvHtPARRLSRlYihAcK~~s~~krAsaArn~vSGLVLVaKaC-GND-VpRLTFWLSNtvVLReII--sqa~~~~~~~ 376 (786)
.+-+-.||.=|...=.|+.|.....++-+.--.++.++=-|.+.. |+| +..|.|||||+.-|--.+ .|.......
T Consensus 44 ~~~~l~PA~il~~cl~~~~~~~~~~~~~~ll~~ii~~I~~~v~~~~~~d~i~~lafWLSN~~~LL~~L~~k~~~~~~~~- 122 (419)
T 2f6h_X 44 KRDVVYPARILIIVLSEMWRFGLTKQSESFLAQVLTTIQKVVTQLKGNDLIPSGVFWLANVRELYSFVVFALNSILTEE- 122 (419)
T ss_dssp HHHHSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred CCCcchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcCCCcchhhhhHHHHHHHHHHHHHHHhhhhhhccC-
Confidence 445668998877766677777554444444444555544444555 467 588999999999999988 444311000
Q ss_pred CCCCCCCCCCCCcccccCccccccchhhhccccCCCCCcchh----hHHHHHHHHhHHHHHHhHHHHhhhhc---ccccc
Q 003920 377 DGPSTNNGDKKGLAERFTPKRQESISEIEKNNVIGESDDWEN----LQTFIVALEKLEAWIFSRIVESVWWQ---TLTPH 449 (786)
Q Consensus 377 ~~~~~~ng~~~~~~~~~~~~~wk~~~~~k~~~~~~~~~dW~e----~~tf~~ALekvEsWIFSRIVESVWWQ---~lTPh 449 (786)
+ + .. .....+|.+ ...|...|+-+.-.||+.++..+-=. .+.|-
T Consensus 123 --~---~---------~~---------------~~~~~~~~~y~~l~~~~~~~L~~l~~~iy~~li~~l~k~L~p~l~pa 173 (419)
T 2f6h_X 123 --T---F---------KN---------------GMTDEEYKEYVSLVTELKDDFEALSYNIYNIWLKKLQKQLQKKAINA 173 (419)
T ss_dssp --C-------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --c---c---------cc---------------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 00 001134433 44567788888889999887655321 33454
Q ss_pred ccccccc-CCcccccCC-CCCCCCccccccchHHHHHHHHHHHHHHccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 003920 450 MQSAAVK-GSSSRKASG-RRNGLGDQEQGNFSIELWKKAFKDACERLCPVRAGGHECGCLPVLAKLVMEQLVGRLDVAMF 527 (786)
Q Consensus 450 MQs~~~~-~s~s~k~~~-~~~~lgDq~Qg~fSI~lWK~AF~dA~~RlCP~ra~gheCGCLpvLarlVmeqcvaRLDVAMF 527 (786)
|+-+..- +....+..+ ....... +...+++-=-+-|......|+ .|+==|.|.++++.|+.-=+++-+|
T Consensus 174 Il~~~~~~~~~~~~~~~~~~k~~~~--~~~~~~~~Il~~L~~~~~~L~-------~~~V~~~l~~Q~fsQlf~~In~~lF 244 (419)
T 2f6h_X 174 VVISESLPGFSAGETSGFLNKIFAN--TEEYTMDDILTFFNSIYWCMK-------SFHIENEVFHAVVTTLLNYVDAICF 244 (419)
T ss_dssp HTTSCSSTTTTC-----------------CCCHHHHHHHHHHHHHHHH-------HTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCcccccccccccccccccccccC--CCccCHHHHHHHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5433211 100111111 0111111 123444433344444444443 3444589999999999999999999
Q ss_pred HHHhhccCCCCCCCCCCCCCCCCcccccCCCCccccchhhhhhhhhhhHHHHHhhhCCCCCCCCCCCccccccCCCCCCC
Q 003920 528 NAILRESAEEMPTDPVSDPISDPKVLPIPAGKSSFGAGAQLKNAIGNWSRWLTDLFGIDDNDPPEDVNEVCDDKGIGRDT 607 (786)
Q Consensus 528 NAILRes~~eiPTDPiSDPI~D~kVLPIPaG~lSFGaGAqLKnaIgnWSrwLtDlfGid~~d~~~~~~~~~~~~~~~~~~ 607 (786)
|.||-. ++-.+|..|.|+|.-|+..-.|+... |+..
T Consensus 245 N~LL~r-----------------------~~~cs~s~G~qIr~nls~Le~W~~~~-~l~~-------------------- 280 (419)
T 2f6h_X 245 NELIMK-----------------------RNFLSWKRGLQLNYNVTRLEEWCKTH-GLTD-------------------- 280 (419)
T ss_dssp HHHHTC-----------------------SSCCCHHHHHHHHHHHHHHHHHHHHT-TCTT--------------------
T ss_pred HHHhcc-----------------------CcccchhhHHHHHhhHHHHHHHHHHc-CChh--------------------
Confidence 999862 23589999999999999999999987 5420
Q ss_pred CCChhhhhHhhhhccccccccccccccccccCCCCChhHHHHHhhccCCCCCCCCCCChHHHHhhhc
Q 003920 608 SFKPFQLLNALSDLMMLPCEMLADNYTRKEVCPTFGAPLIKRVLNNFVPDEFNPDPISPSVFEALDS 674 (786)
Q Consensus 608 ~~k~F~LLnalSDLlMLPKDML~d~SiRkEVCP~~~lplIkrIL~nF~PDEFcPDPVp~~VleaLns 674 (786)
....|.-|+.++.||.++|.-+.|-....++||.++..-|.|||..|.||+| .+|||+.|+..+.+
T Consensus 281 a~~~L~~l~Qa~~lLq~~k~~~~d~~~i~~~C~~Ln~~Ql~~il~~Y~~d~~-e~~v~~~~i~~v~~ 346 (419)
T 2f6h_X 281 GTECLQHLIQTAKLLQVRKYTIEDIDILRGICYSLTPAQLQKLISQYQVADY-ESPIPQEILRYVAD 346 (419)
T ss_dssp HHHHTHHHHHHHHHTTSCCSSHHHHHHHHHHTTTSCHHHHHHHHHHCCCCTT-SCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCchhhHHHHHHHhhcCCHHHHHHHHHhCCCccC-CCCCCHHHHHHHHH
Confidence 1135888999999999999988888889999999999999999999999999 99999999998864
No 2
>3mmi_A Myosin-4; globular tail, dilute domain, motor protein; 2.30A {Saccharomyces cerevisiae}
Probab=98.86 E-value=2.4e-08 Score=106.19 Aligned_cols=306 Identities=13% Similarity=0.118 Sum_probs=193.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhceeccccCCCccCcCchhhhhhHHHHHHhhccchhhHHHHHhhhhcceEEEeec-c
Q 003920 267 VGLEFKIEMLQDELREAAALEVGLYSVVAEHGSSTSKVHTPARRLCRFYFHACRAMSKAKRASAARTAISGLVLVSKA-C 345 (786)
Q Consensus 267 ~ele~rie~LE~ELREaAAlEvsLYSVVaEHGSS~hKvHtPARRLSRlYihAcK~~s~~krAsaArn~vSGLVLVaKa-C 345 (786)
.||...++.+..+-.|+. |-=+.. ||.---+..=|-.||+=|.-.-=|+-|..-..+--+.--++++++==+.|. =
T Consensus 17 ~el~~ll~d~~~~~~ei~--~gl~~~-ip~~~~~~~evl~PA~ii~~~~~~m~~~gl~~~s~~fl~~v~~~I~~~v~~~~ 93 (386)
T 3mmi_A 17 PDLLELLMDLNCYTLEVT--EGYLKK-VNVTEVNGDNVLGPIHVITTVVSSLVRNGLLIQSSKFISKVLLTVESIVMSLP 93 (386)
T ss_dssp -CHHHHHHCHHHHHHHHH--HHTSTT-CCCSCCCC---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhhHHHHH--HHHhhc-CCCCCCCccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 566666666666555553 222333 554445666788999999988888877755433222222222222222244 3
Q ss_pred cCC-CCcchhhhhhHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcccccCccccccchhhhccccCCCCCcchh-hHHHH
Q 003920 346 GND-VPRLTFWLSNTVLLRAIVSHAIGGMQLSDGPSTNNGDKKGLAERFTPKRQESISEIEKNNVIGESDDWEN-LQTFI 423 (786)
Q Consensus 346 GND-VpRLTFWLSNtvVLReIIsqa~~~~~~~~~~~~~ng~~~~~~~~~~~~~wk~~~~~k~~~~~~~~~dW~e-~~tf~ 423 (786)
|.| ++...|||||+--|+.-|.-+-. .. .+ ..+++|.. ...+-
T Consensus 94 ~~d~i~~g~FWLsN~~~l~sFv~~~q~----~~----~~---------------------------~~~d~y~~ll~e~r 138 (386)
T 3mmi_A 94 KDETMLGGIFWLSNLSRLPAFAANQKT----LY----EA---------------------------NGGDEKDKLTLIYL 138 (386)
T ss_dssp TTTHHHHHHHHHHHHTTHHHHHHHHHT----TC---------------------------------------CHHHHHHH
T ss_pred CccccccchHHHHhHHHHHHHHHHHHH----HH----Hc---------------------------cChhHHHHHHHHHH
Confidence 788 89999999999877775544331 00 00 00233333 23344
Q ss_pred HHHHhHHH----HHHhHHHHhhh--hcccccccccccccCCcccccCCCCCCCCccccccchHHHHHHHHHHHHHHcccc
Q 003920 424 VALEKLEA----WIFSRIVESVW--WQTLTPHMQSAAVKGSSSRKASGRRNGLGDQEQGNFSIELWKKAFKDACERLCPV 497 (786)
Q Consensus 424 ~ALekvEs----WIFSRIVESVW--WQ~lTPhMQs~~~~~s~s~k~~~~~~~lgDq~Qg~fSI~lWK~AF~dA~~RlCP~ 497 (786)
.-|+.++- .||.-++..+= =|++.|-| .+. +..++. + ....++++-=-+-|......|+
T Consensus 139 ~~l~~L~~~~~e~IY~~~i~~lkk~L~~ilP~~-----~~~----~~~k~~--~--~~~~~s~~~Il~~L~~~~~~L~-- 203 (386)
T 3mmi_A 139 NDLENETLKVFDKIYSTWLVKFMKHASAHIEIF-----DMV----LNEKLF--K--NSGDEKFAKLFTFLNEFDAVLC-- 203 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH-----HHH----TCGGGS--S--SCCHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhhcccc-----ccc----cccccc--C--CCCccCHHHHHHHHHHHHHHHH--
Confidence 46777777 88876554431 01222333 111 122221 2 1234555444444444444443
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCcccccCCCCccccchhhhhhhhhhhHH
Q 003920 498 RAGGHECGCLPVLAKLVMEQLVGRLDVAMFNAILRESAEEMPTDPVSDPISDPKVLPIPAGKSSFGAGAQLKNAIGNWSR 577 (786)
Q Consensus 498 ra~gheCGCLpvLarlVmeqcvaRLDVAMFNAILRes~~eiPTDPiSDPI~D~kVLPIPaG~lSFGaGAqLKnaIgnWSr 577 (786)
.|+==|.|.++++.|+.-=+++.+||.||-. .+-.+|..|+|+|.-|...-.
T Consensus 204 -----~~~V~p~li~QlfsQLF~fIna~lFN~LLlR-----------------------r~~cs~s~G~qIr~NLs~LEe 255 (386)
T 3mmi_A 204 -----KFQVVDSMHTKIFNDTLKYLNVMLFNDLITK-----------------------CPALNWKYGYEVDRNIERLVS 255 (386)
T ss_dssp -----HTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------CCCBCHHHHHHHHHHHHHHHH
T ss_pred -----HcCCCHHHHHHHHHHHHHHHhHHHHHHHHcc-----------------------CcccCcchHHHHHhhHHHHHH
Confidence 2445589999999999999999999999862 356899999999999999999
Q ss_pred HHHhhhCCCCCCCCCCCccccccCCCCCCCCCChhhhhHhhhhccccccccccccccccccCCCCChhHHHHHhhccCCC
Q 003920 578 WLTDLFGIDDNDPPEDVNEVCDDKGIGRDTSFKPFQLLNALSDLMMLPCEMLADNYTRKEVCPTFGAPLIKRVLNNFVPD 657 (786)
Q Consensus 578 wLtDlfGid~~d~~~~~~~~~~~~~~~~~~~~k~F~LLnalSDLlMLPKDML~d~SiRkEVCP~~~lplIkrIL~nF~PD 657 (786)
|+.. |+.. ....|.-|+.++.||-+||.-+.|-.+-.++||.++..-|.+||..|.||
T Consensus 256 W~~~--~l~~--------------------a~~~L~~L~QA~~LLQ~~K~t~~Di~~i~~~C~~Lsp~QL~kIL~~Y~p~ 313 (386)
T 3mmi_A 256 WFEP--RIED--------------------VRPNLIQIIQAVKILQLKISNLNEFKLLFDFWYALNPAQIQAILLKYKPA 313 (386)
T ss_dssp HHTT--TSSC--------------------CGGGGHHHHHHHHHHHCCCCCHHHHHHHHTTCCSSCHHHHHHHHHTBCCC
T ss_pred HHHh--ccHH--------------------HHHHHHHHHHHHHHHccCCCCHHHHHHHHHhcccCCHHHHHHHHHhCcCC
Confidence 9988 5431 11378889999999999998888887778999999999999999999999
Q ss_pred CCCCCCCChHHHHhhhcC
Q 003920 658 EFNPDPISPSVFEALDSE 675 (786)
Q Consensus 658 EFcPDPVp~~VleaLnsE 675 (786)
++..+|||+.++.++.+-
T Consensus 314 ~~~E~~V~~e~i~~v~~~ 331 (386)
T 3mmi_A 314 NKGEAGVPNEILNYLANV 331 (386)
T ss_dssp -----CCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHH
Confidence 999999999999988653
No 3
>2lme_A Adhesin YADA; trimeric autotransporter, membrane protein, cell adhesion; NMR {Yersinia enterocolitica subsp}
Probab=26.94 E-value=42 Score=29.75 Aligned_cols=33 Identities=15% Similarity=0.184 Sum_probs=28.2
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHhhhcee
Q 003920 261 GFSNRNVGLEFKIEMLQDELREAAALEVGLYSV 293 (786)
Q Consensus 261 ~~~~~~~ele~rie~LE~ELREaAAlEvsLYSV 293 (786)
...+++.+|..||++++.|+|-.+|.=++|=.+
T Consensus 13 ~~~~~~~~l~~~i~~~~~~~~~g~A~a~A~a~l 45 (105)
T 2lme_A 13 KGAHKFRQLDNRLDKLDTRVDKGLASSAALNSL 45 (105)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 445889999999999999999999988887543
No 4
>3j27_B Matrix protein, small envelope protein M; flavivirus, fusion protein, protein complex, membrane, chape virus; HET: NAG; 3.60A {Dengue virus 2} PDB: 3j2p_B* 1p58_D
Probab=17.83 E-value=65 Score=27.76 Aligned_cols=21 Identities=19% Similarity=0.605 Sum_probs=18.5
Q ss_pred CcchhhHHHHHHHHhHHHHHH
Q 003920 414 DDWENLQTFIVALEKLEAWIF 434 (786)
Q Consensus 414 ~dW~e~~tf~~ALekvEsWIF 434 (786)
+-|-+.+....-|.|||.||.
T Consensus 17 ~~Wl~~~~~~~~l~rvE~Wil 37 (75)
T 3j27_B 17 ETWMSSEGAWKHAQRIETWIL 37 (75)
T ss_dssp CCSSTTHHHHHHHHHHHHHHH
T ss_pred ccCcCcchHHHHHHHHHHHHH
Confidence 559999999999999999984
No 5
>1p58_D Envelope protein M; flavivirus, flaviviridae, glycoprotein E from borne encephalitis virus, membrane protein M, cryo-EM, ICOS virus; 9.50A {Dengue virus 2 puerto rico} SCOP: i.17.1.1
Probab=16.23 E-value=63 Score=27.90 Aligned_cols=22 Identities=18% Similarity=0.601 Sum_probs=18.7
Q ss_pred CCcchhhHHHHHHHHhHHHHHH
Q 003920 413 SDDWENLQTFIVALEKLEAWIF 434 (786)
Q Consensus 413 ~~dW~e~~tf~~ALekvEsWIF 434 (786)
.+-|-+.+....-|.|||.||.
T Consensus 16 ~~~Wl~~~~~~~~l~kvE~Wil 37 (75)
T 1p58_D 16 TETWMSSEGAWKHAQRIETWIL 37 (75)
T ss_pred CCcccCcchHHHHHHHHHHHHH
Confidence 3568888888899999999984
No 6
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=15.89 E-value=1e+02 Score=24.10 Aligned_cols=19 Identities=11% Similarity=-0.025 Sum_probs=15.6
Q ss_pred chhHHHHHHHHHHHHHHHH
Q 003920 266 NVGLEFKIEMLQDELREAA 284 (786)
Q Consensus 266 ~~ele~rie~LE~ELREaA 284 (786)
+.+|+.+|..||++|....
T Consensus 46 ~~~L~~ri~~Le~~l~~l~ 64 (70)
T 1zme_C 46 LQQLQKDLNDKTEENNRLK 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6779999999999887643
No 7
>4b2v_A S64; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=12.88 E-value=53 Score=24.39 Aligned_cols=7 Identities=57% Similarity=1.161 Sum_probs=5.5
Q ss_pred CCCCCCC
Q 003920 657 DEFNPDP 663 (786)
Q Consensus 657 DEFcPDP 663 (786)
--|||||
T Consensus 7 ggfcpdp 13 (32)
T 4b2v_A 7 GGFCPDP 13 (32)
T ss_dssp TCBCCCT
T ss_pred CCcCCCh
Confidence 3589998
No 8
>1y2y_A Ribosome biogenesis protein NOP10; box H/ACA snoRNA,snoRNP, pseudouridine, biosynthetic protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.16.1 PDB: 3u28_B 3uai_B 2aqa_A
Probab=12.67 E-value=31 Score=28.86 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=14.6
Q ss_pred cccccCCCCChhHHHHHhhccCCCC
Q 003920 634 TRKEVCPTFGAPLIKRVLNNFVPDE 658 (786)
Q Consensus 634 iRkEVCP~~~lplIkrIL~nF~PDE 658 (786)
+=|++||. |.+.+.--=.+|-|||
T Consensus 16 TLk~~cP~-G~~T~sahPaRFSPdD 39 (58)
T 1y2y_A 16 TLKKVTES-GEITKSAHPARFSPDD 39 (58)
T ss_dssp BCCSTTCS-SSSSSSSCSSSSCSCT
T ss_pred eccccCCC-CCccccCCCCCCCCCc
Confidence 34789998 7665544444555543
No 9
>3ic3_A Putative pyruvate dehydrogenase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE BGC; 1.80A {Rhodopseudomonas palustris}
Probab=12.37 E-value=1e+02 Score=28.23 Aligned_cols=42 Identities=21% Similarity=0.362 Sum_probs=28.8
Q ss_pred CCCCCCCcccccCCCCccccchhhhhhh-----------------hhhhHHHHHhhhCC
Q 003920 544 SDPISDPKVLPIPAGKSSFGAGAQLKNA-----------------IGNWSRWLTDLFGI 585 (786)
Q Consensus 544 SDPI~D~kVLPIPaG~lSFGaGAqLKna-----------------IgnWSrwLtDlfGi 585 (786)
|+.+..+|-||||++++.=-.+++|=++ .-.|.+.|+|++..
T Consensus 1 ~~~~~~~keL~iPp~a~~d~~AvEvlRaWVad~glhvsl~~~~~~p~~WG~lLaDlarH 59 (101)
T 3ic3_A 1 SNAMTGPKQQPLPPDVEGREDAIEVLRAFVLDGGLSIAFMRAFEDPEMWGLLLVDIARH 59 (101)
T ss_dssp -CCCCSCBCCCCCTTTTTCTTCEEEEEEEEETTEEEEEECSCCCCHHHHHHHHHHHHHH
T ss_pred CccccCcccCCCCccccccccHHHHHHHHHHcCCeEEEehhhhcCHHHHHHHHHHHHHH
Confidence 4567888999999887765444443332 56899999998643
No 10
>3k1t_A Glutamate--cysteine ligase GSHA; putative gamma-glutamylcysteine synthetase; HET: MSE; 1.90A {Methylobacillus flagellatus KT}
Probab=12.09 E-value=1.6e+02 Score=32.53 Aligned_cols=121 Identities=18% Similarity=0.280 Sum_probs=69.9
Q ss_pred HHHHHHHhHHHHHHhHHHHhhhhcccccccccccc-cCCcccccCC--CCCCCCccccccchHHHHHHHHHHHHHHcccc
Q 003920 421 TFIVALEKLEAWIFSRIVESVWWQTLTPHMQSAAV-KGSSSRKASG--RRNGLGDQEQGNFSIELWKKAFKDACERLCPV 497 (786)
Q Consensus 421 tf~~ALekvEsWIFSRIVESVWWQ~lTPhMQs~~~-~~s~s~k~~~--~~~~lgDq~Qg~fSI~lWK~AF~dA~~RlCP~ 497 (786)
.++.+...||.|+- -.||..||.-=+++. ..++=|-.-. ..-.=|=..-+-=.+-|=.+|++.|++|+||-
T Consensus 21 ~il~~~~~IE~WFr------~~w~~~~~PfY~SVDlRnaGfKlAPVDtNLFPaGFNNL~~~~~plavqa~~~aiek~cp~ 94 (432)
T 3k1t_A 21 RLLDNMPRIEHWFR------SQWQEYGAPFYASVDLRNAGFKLAPVDTNLFPGGFNNLNPDFLPLCIQAAMVAVEKICPD 94 (432)
T ss_dssp HHHTSHHHHHHHHH------HHHHHHCCCSEEEEEEEECSSCEEEEEEESSCCCGGGSCGGGHHHHHHHHHHHHHHHSTT
T ss_pred HHHhhHHHHHHHHH------HHHhcCCCCceEEEEecccCCccccccccCCCcccccCCHHHHHHHHHHHHHHHHHhCcc
Confidence 46677889999998 679988887665543 1222111110 01122333333346789999999999999993
Q ss_pred ------CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCcccccCCCC
Q 003920 498 ------RAGGHECGCLPVLAKLVMEQLVGRLDVAMFNAILRESAEEMPTDPVSDPISDPKVLPIPAGK 559 (786)
Q Consensus 498 ------ra~gheCGCLpvLarlVmeqcvaRLDVAMFNAILRes~~eiPTDPiSDPI~D~kVLPIPaG~ 559 (786)
=+..|-.-- .-++ .|++.-.||+.-+-++=.--++.-|..+..+..|.|.
T Consensus 95 a~~iLlIPEnHTRN~------fYl~------Nv~~L~~I~~~AG~~VriGsl~p~i~e~~~~~l~~G~ 150 (432)
T 3k1t_A 95 ARRLLLIPENHTRNT------FYLR------NVHALTHILRQAGLEVRIGSIAPEITAPTFLETHDGH 150 (432)
T ss_dssp CSEEEEEECSCSSCH------HHHH------HHHHHHHHHHHTTCEEEEEECCTTCCSCEEEECSSSC
T ss_pred cceEEEecCCCcccH------HHHH------HHHHHHHHHHHcCceEEEcCCCccccCceEEecCCCC
Confidence 123343321 1222 2455666777665555444444446666666666663
Done!