Query 003920
Match_columns 786
No_of_seqs 49 out of 51
Neff 2.6
Searched_HMMs 13730
Date Mon Mar 25 08:19:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003920.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/003920hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2g7sa2 a.121.1.1 (A:77-192) P 19.2 16 0.0012 28.9 1.0 51 480-530 11-61 (116)
2 d1bjna_ c.67.1.4 (A:) Phosphos 17.0 24 0.0017 31.4 1.7 23 651-676 2-24 (360)
3 d2c0ra1 c.67.1.4 (A:2-362) Pho 14.0 31 0.0023 31.4 1.7 23 651-676 4-26 (361)
4 d1vlaa_ d.227.1.2 (A:) Hypothe 12.1 56 0.0041 26.7 2.6 25 475-499 104-128 (144)
5 d1w23a_ c.67.1.4 (A:) Phosphos 9.2 56 0.0041 29.3 1.7 23 651-676 4-26 (360)
6 d1vfra_ d.90.1.1 (A:) Flavin r 9.1 1E+02 0.0073 25.6 3.2 29 645-673 3-32 (217)
7 d1ykhb1 a.252.1.1 (B:2-130) RN 8.6 1E+02 0.0073 26.4 3.0 14 230-243 65-78 (129)
8 d2csba2 a.60.2.4 (A:294-350) T 8.1 60 0.0043 24.7 1.2 16 635-650 41-56 (57)
9 d1ykia1 d.90.1.1 (A:2-217) Oxy 7.9 1.1E+02 0.0084 25.2 3.1 27 647-673 3-30 (216)
10 d1e52a_ a.2.9.1 (A:) C-termina 7.5 1.6E+02 0.011 22.2 3.3 22 264-285 10-31 (56)
No 1
>d2g7sa2 a.121.1.1 (A:77-192) Putative transcriptional regulator Atu0279 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=19.22 E-value=16 Score=28.93 Aligned_cols=51 Identities=20% Similarity=0.265 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHccccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 003920 480 IELWKKAFKDACERLCPVRAGGHECGCLPVLAKLVMEQLVGRLDVAMFNAI 530 (786)
Q Consensus 480 I~lWK~AF~dA~~RlCP~ra~gheCGCLpvLarlVmeqcvaRLDVAMFNAI 530 (786)
++.|+..+++...+.|++.....|-+.+|--.|..+.+...++-..+-..|
T Consensus 11 ~~~~~~~~~~~~~~gCl~~~~a~E~~~~~~~v~~~~~~~~~~~~~~l~~~l 61 (116)
T d2g7sa2 11 IGYWEGCIADATHPFCVCALLASEIPVLPETVVLEVRAHFRSLSDWLTAVL 61 (116)
T ss_dssp HHHHHHHHHHCSSCSCHHHHHHTTGGGSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCCCCCHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 578988888887889999888888888888777777777777754444443
No 2
>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]}
Probab=17.02 E-value=24 Score=31.40 Aligned_cols=23 Identities=22% Similarity=0.444 Sum_probs=18.6
Q ss_pred hhccCCCCCCCCCCChHHHHhhhcCC
Q 003920 651 LNNFVPDEFNPDPISPSVFEALDSEV 676 (786)
Q Consensus 651 L~nF~PDEFcPDPVp~~VleaLnsE~ 676 (786)
+.||+| -|=.||+.|++|+...-
T Consensus 2 ~~nF~p---GP~~~p~~Vl~a~~~~~ 24 (360)
T d1bjna_ 2 IFNFSS---GPAMLPAEVLKQAQQEL 24 (360)
T ss_dssp CEECCS---SSCCCCHHHHHHHHHTS
T ss_pred eEEeCC---CCcCCCHHHHHHHHHHH
Confidence 468887 67778999999998763
No 3
>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}
Probab=13.98 E-value=31 Score=31.44 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=18.3
Q ss_pred hhccCCCCCCCCCCChHHHHhhhcCC
Q 003920 651 LNNFVPDEFNPDPISPSVFEALDSEV 676 (786)
Q Consensus 651 L~nF~PDEFcPDPVp~~VleaLnsE~ 676 (786)
+.||.| =|-+||+.|+||+..+-
T Consensus 4 ~~~F~p---GP~~vp~~V~eam~~~~ 26 (361)
T d2c0ra1 4 AYNFNA---GPAALPLEVLERAQAEF 26 (361)
T ss_dssp CEECCS---SSCCCCHHHHHHHHHTS
T ss_pred CcccCC---CCcCCCHHHHHHHHHHH
Confidence 467877 67888999999997653
No 4
>d1vlaa_ d.227.1.2 (A:) Hypothetical protein TM0919 {Thermotoga maritima [TaxId: 2336]}
Probab=12.13 E-value=56 Score=26.74 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=21.1
Q ss_pred cccchHHHHHHHHHHHHHHccccCC
Q 003920 475 QGNFSIELWKKAFKDACERLCPVRA 499 (786)
Q Consensus 475 Qg~fSI~lWK~AF~dA~~RlCP~ra 499 (786)
.|..+-+-.+++++.|.+|.||+..
T Consensus 104 ~~~~~~e~~~~~i~~a~~k~CpV~~ 128 (144)
T d1vlaa_ 104 DGEPPKDKVEKAVQLSQEKYCSVSA 128 (144)
T ss_dssp SSSCCHHHHHHHHHHHHHTSCTTTT
T ss_pred CCCCCHHHHHHHHHHHhccCCchhH
Confidence 4566778899999999999999864
No 5
>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]}
Probab=9.22 E-value=56 Score=29.28 Aligned_cols=23 Identities=22% Similarity=0.432 Sum_probs=18.8
Q ss_pred hhccCCCCCCCCCCChHHHHhhhcCC
Q 003920 651 LNNFVPDEFNPDPISPSVFEALDSEV 676 (786)
Q Consensus 651 L~nF~PDEFcPDPVp~~VleaLnsE~ 676 (786)
+.||.| -|=+||+.|+||+...-
T Consensus 4 ~~nF~p---GP~~~p~~V~~a~~~~~ 26 (360)
T d1w23a_ 4 VFNFNA---GPSALPKPALERAQKEL 26 (360)
T ss_dssp CEECCS---SSCCCCHHHHHHHHHTS
T ss_pred eeEeCC---CCcCCCHHHHHHHHHHH
Confidence 358888 78888999999997654
No 6
>d1vfra_ d.90.1.1 (A:) Flavin reductase P (NADPH:FMN oxidoreductase) {Vibrio fischeri [TaxId: 668]}
Probab=9.07 E-value=1e+02 Score=25.59 Aligned_cols=29 Identities=21% Similarity=0.510 Sum_probs=24.1
Q ss_pred hHHHHHhhccCCCCCCCC-CCChHHHHhhh
Q 003920 645 PLIKRVLNNFVPDEFNPD-PISPSVFEALD 673 (786)
Q Consensus 645 plIkrIL~nF~PDEFcPD-PVp~~VleaLn 673 (786)
++|.-|..+.+=-.|.+| |||...++.|=
T Consensus 3 ~~~~~i~~RrSvR~fd~~~~V~~e~i~~il 32 (217)
T d1vfra_ 3 PIIHDLENRYTSKKYDPSKKVSQEDLAVLL 32 (217)
T ss_dssp HHHHHHHHCCBCSSBCTTCCCCHHHHHHHH
T ss_pred HHHHHHHhCccccCcCCCCCCCHHHHHHHH
Confidence 677777888888889887 99999999864
No 7
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.58 E-value=1e+02 Score=26.39 Aligned_cols=14 Identities=14% Similarity=0.078 Sum_probs=7.7
Q ss_pred ccccccccCccccc
Q 003920 230 FMGKEKKNDISKDV 243 (786)
Q Consensus 230 ~~ee~ke~d~ld~~ 243 (786)
++.++|-|+.|=++
T Consensus 65 ii~kakqId~LI~s 78 (129)
T d1ykhb1 65 IILKTRQINKLIDS 78 (129)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHh
Confidence 34456666665543
No 8
>d2csba2 a.60.2.4 (A:294-350) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=8.15 E-value=60 Score=24.65 Aligned_cols=16 Identities=38% Similarity=0.588 Sum_probs=12.8
Q ss_pred ccccCCCCChhHHHHH
Q 003920 635 RKEVCPTFGAPLIKRV 650 (786)
Q Consensus 635 RkEVCP~~~lplIkrI 650 (786)
-|+|||.+.+..-|.|
T Consensus 41 lkdvcpdltleeaksv 56 (57)
T d2csba2 41 LKDVCPDLTLEEAKSV 56 (57)
T ss_dssp HHHHCTTCCHHHHHHH
T ss_pred HHhhCCcccHhhhccC
Confidence 3789999999887754
No 9
>d1ykia1 d.90.1.1 (A:2-217) Oxygen-insensitive NAD(P)H nitroreductase {Escherichia coli, minor form, NfnB [TaxId: 562]}
Probab=7.89 E-value=1.1e+02 Score=25.19 Aligned_cols=27 Identities=19% Similarity=0.386 Sum_probs=19.7
Q ss_pred HHHHhhccCCCCCCCC-CCChHHHHhhh
Q 003920 647 IKRVLNNFVPDEFNPD-PISPSVFEALD 673 (786)
Q Consensus 647 IkrIL~nF~PDEFcPD-PVp~~VleaLn 673 (786)
+.=+..+..--.|.+| |||+.+|+.|=
T Consensus 3 ~~~~~~RrS~R~f~~~~~V~~e~l~~il 30 (216)
T d1ykia1 3 ISVALKRHSTKAFDASKKLTPEQAEQIK 30 (216)
T ss_dssp HHHHHHCCBCSCBCTTCCCCHHHHHHHH
T ss_pred HHHHHHCCcccCcCCCCCCCHHHHHHHH
Confidence 4445566666678776 99999998864
No 10
>d1e52a_ a.2.9.1 (A:) C-terminal UvrC-binding domain of UvrB {Escherichia coli [TaxId: 562]}
Probab=7.46 E-value=1.6e+02 Score=22.25 Aligned_cols=22 Identities=23% Similarity=0.175 Sum_probs=18.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHH
Q 003920 264 NRNVGLEFKIEMLQDELREAAA 285 (786)
Q Consensus 264 ~~~~ele~rie~LE~ELREaAA 285 (786)
-...+++..|+.||.+..++|.
T Consensus 10 ls~~el~k~i~~Le~~M~~aa~ 31 (56)
T d1e52a_ 10 MSPKALQQKIHELEGLMMQHAQ 31 (56)
T ss_dssp SCCSHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 4456789999999999999885
Done!