Query 003922
Match_columns 786
No_of_seqs 398 out of 1797
Neff 6.7
Searched_HMMs 46136
Date Thu Mar 28 14:23:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003922.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003922hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02668 Peptidase_C19L A subfa 100.0 1.4E-36 3E-41 332.4 18.5 183 1-214 142-324 (324)
2 KOG1865 Ubiquitin carboxyl-ter 100.0 1.3E-36 2.9E-41 336.0 12.4 143 1-148 252-394 (545)
3 cd02663 Peptidase_C19G A subfa 100.0 5.2E-35 1.1E-39 316.6 16.0 149 1-151 133-281 (300)
4 cd02664 Peptidase_C19H A subfa 100.0 2.3E-34 4.9E-39 315.4 14.7 146 1-149 123-307 (327)
5 cd02671 Peptidase_C19O A subfa 100.0 2.8E-33 6E-38 306.8 16.4 144 1-152 147-313 (332)
6 KOG1866 Ubiquitin carboxyl-ter 100.0 4.3E-35 9.3E-40 327.6 -0.5 231 2-273 234-484 (944)
7 cd02667 Peptidase_C19K A subfa 100.0 1.1E-32 2.4E-37 295.5 15.7 143 1-148 93-265 (279)
8 cd02659 peptidase_C19C A subfa 100.0 3E-32 6.5E-37 298.8 18.3 152 1-153 137-299 (334)
9 COG5077 Ubiquitin carboxyl-ter 100.0 4.4E-33 9.4E-38 311.6 5.8 213 1-263 324-540 (1089)
10 KOG4598 Putative ubiquitin-spe 100.0 2.4E-32 5.2E-37 302.2 6.0 148 2-150 195-414 (1203)
11 cd02657 Peptidase_C19A A subfa 100.0 8.6E-31 1.9E-35 283.8 14.2 142 1-151 143-287 (305)
12 cd02660 Peptidase_C19D A subfa 100.0 1.4E-30 3E-35 284.8 15.7 144 1-148 147-314 (328)
13 cd02661 Peptidase_C19E A subfa 100.0 3.7E-30 8E-35 277.5 15.9 143 1-148 148-290 (304)
14 cd02665 Peptidase_C19I A subfa 100.0 3.3E-30 7.1E-35 266.8 11.2 132 1-152 79-210 (228)
15 cd02674 Peptidase_C19R A subfa 100.0 2.8E-29 6E-34 260.5 15.4 145 1-148 64-216 (230)
16 cd02662 Peptidase_C19F A subfa 100.0 5.7E-29 1.2E-33 261.2 14.6 124 1-148 77-225 (240)
17 cd02658 Peptidase_C19B A subfa 100.0 4E-28 8.6E-33 263.8 15.9 131 2-148 151-297 (311)
18 cd02669 Peptidase_C19M A subfa 100.0 1.2E-28 2.5E-33 280.3 10.4 143 1-148 275-426 (440)
19 KOG1863 Ubiquitin carboxyl-ter 99.9 3.3E-27 7.1E-32 291.7 14.0 659 1-769 304-1015(1093)
20 cd02670 Peptidase_C19N A subfa 99.9 4.3E-27 9.4E-32 245.5 12.6 121 2-147 64-220 (241)
21 cd02673 Peptidase_C19Q A subfa 99.9 9E-27 2E-31 244.9 12.1 133 1-149 94-229 (245)
22 COG5560 UBP12 Ubiquitin C-term 99.9 1.9E-27 4.1E-32 263.2 5.8 133 14-149 674-807 (823)
23 cd02672 Peptidase_C19P A subfa 99.9 4.5E-26 9.7E-31 242.6 13.8 144 1-147 98-259 (268)
24 COG5533 UBP5 Ubiquitin C-termi 99.9 3.1E-25 6.7E-30 228.6 12.7 141 2-147 249-396 (415)
25 KOG1868 Ubiquitin C-terminal h 99.9 2.4E-25 5.2E-30 257.2 8.1 144 1-147 477-629 (653)
26 cd02257 Peptidase_C19 Peptidas 99.9 3.7E-24 8.1E-29 220.4 15.4 143 3-149 83-237 (255)
27 KOG1867 Ubiquitin-specific pro 99.9 2.4E-24 5.3E-29 244.7 8.5 144 1-148 310-468 (492)
28 KOG1870 Ubiquitin C-terminal h 99.9 3.7E-24 8.1E-29 258.8 5.3 130 14-148 695-825 (842)
29 KOG1864 Ubiquitin-specific pro 99.9 1.5E-23 3.3E-28 241.7 9.1 153 2-155 406-560 (587)
30 PF00443 UCH: Ubiquitin carbox 99.9 1.5E-21 3.2E-26 204.2 15.2 108 35-148 142-253 (269)
31 KOG1873 Ubiquitin-specific pro 99.8 4.2E-22 9.1E-27 224.8 -0.7 135 12-148 675-861 (877)
32 KOG0944 Ubiquitin-specific pro 99.8 4.6E-19 1E-23 198.9 11.9 88 3-96 455-548 (763)
33 cd02666 Peptidase_C19J A subfa 99.8 3.2E-19 7E-24 196.1 5.5 122 1-149 165-324 (343)
34 KOG1871 Ubiquitin-specific pro 99.6 1.1E-16 2.4E-21 170.9 6.3 146 1-151 249-402 (420)
35 COG5207 UBP14 Isopeptidase T [ 99.6 5.6E-16 1.2E-20 168.9 9.7 89 2-96 445-538 (749)
36 PF13423 UCH_1: Ubiquitin carb 99.5 5.7E-14 1.2E-18 152.1 12.1 135 4-143 149-295 (295)
37 KOG1872 Ubiquitin-specific pro 99.5 2E-14 4.4E-19 157.5 3.3 144 2-151 255-449 (473)
38 smart00695 DUSP Domain in ubiq 99.2 1.5E-11 3.3E-16 108.7 5.2 72 301-372 3-85 (86)
39 PF06337 DUSP: DUSP domain; I 99.0 7.2E-10 1.6E-14 100.5 8.0 91 538-634 1-96 (99)
40 KOG2026 Spindle pole body prot 99.0 7.3E-11 1.6E-15 126.3 0.7 130 3-147 277-424 (442)
41 cd01795 USP48_C USP ubiquitin- 98.9 6.3E-10 1.4E-14 98.2 4.1 48 733-783 3-50 (107)
42 smart00695 DUSP Domain in ubiq 98.9 3.1E-09 6.7E-14 94.0 8.4 80 537-635 3-82 (86)
43 PF06337 DUSP: DUSP domain; I 98.6 3.5E-08 7.7E-13 89.4 5.4 67 412-482 4-93 (99)
44 KOG1275 PAB-dependent poly(A) 97.6 0.00011 2.4E-09 86.7 7.0 114 36-149 702-843 (1118)
45 PF15499 Peptidase_C98: Ubiqui 95.9 0.0065 1.4E-07 63.4 3.8 39 102-144 216-254 (275)
46 cd01813 UBP_N UBP ubiquitin pr 88.5 0.55 1.2E-05 40.4 3.8 35 745-783 10-44 (74)
47 cd01796 DDI1_N DNA damage indu 87.4 0.74 1.6E-05 39.1 3.9 29 745-773 10-38 (71)
48 PF00240 ubiquitin: Ubiquitin 87.2 1 2.3E-05 37.5 4.6 29 745-773 6-34 (69)
49 cd01799 Hoil1_N Ubiquitin-like 86.9 0.76 1.6E-05 39.7 3.7 29 745-773 13-41 (75)
50 smart00213 UBQ Ubiquitin homol 86.3 0.99 2.1E-05 36.6 4.0 29 745-773 10-38 (64)
51 cd01794 DC_UbP_C dendritic cel 83.7 1.4 3.1E-05 37.3 3.9 29 745-773 9-37 (70)
52 cd01791 Ubl5 UBL5 ubiquitin-li 81.8 2.3 5E-05 36.5 4.4 33 740-773 8-40 (73)
53 PTZ00044 ubiquitin; Provisiona 81.6 2 4.3E-05 36.6 4.0 29 745-773 11-39 (76)
54 cd01800 SF3a120_C Ubiquitin-li 81.3 1.9 4E-05 37.1 3.7 34 745-781 8-41 (76)
55 PF14560 Ubiquitin_2: Ubiquiti 80.7 2.8 6E-05 37.0 4.7 35 746-783 15-49 (87)
56 cd01793 Fubi Fubi ubiquitin-li 80.6 2.4 5.1E-05 36.2 4.1 29 745-773 9-37 (74)
57 cd01789 Alp11_N Ubiquitin-like 80.4 2.4 5.1E-05 37.4 4.1 34 747-783 15-48 (84)
58 cd01806 Nedd8 Nebb8-like ubiq 79.7 2.7 5.9E-05 35.5 4.2 29 745-773 11-39 (76)
59 cd01812 BAG1_N Ubiquitin-like 78.9 2.4 5.3E-05 35.4 3.6 29 745-773 10-38 (71)
60 cd01803 Ubiquitin Ubiquitin. U 78.7 2.6 5.6E-05 35.6 3.8 29 745-773 11-39 (76)
61 cd01769 UBL Ubiquitin-like dom 78.6 3.1 6.8E-05 34.0 4.2 29 745-773 8-36 (69)
62 cd01798 parkin_N amino-termina 78.5 2.9 6.2E-05 35.2 3.9 29 745-773 9-37 (70)
63 cd01807 GDX_N ubiquitin-like d 77.5 2.9 6.3E-05 35.6 3.7 29 745-773 11-39 (74)
64 cd01809 Scythe_N Ubiquitin-lik 76.5 3.5 7.6E-05 34.4 3.9 29 745-773 11-39 (72)
65 PF11543 UN_NPL4: Nuclear pore 74.4 3.5 7.5E-05 36.1 3.4 35 739-773 8-42 (80)
66 KOG1870 Ubiquitin C-terminal h 74.3 2.8 6.1E-05 52.3 3.9 118 15-147 482-600 (842)
67 cd01802 AN1_N ubiquitin-like d 72.7 4.8 0.0001 37.0 4.0 29 745-773 38-66 (103)
68 cd01810 ISG15_repeat2 ISG15 ub 71.7 5.5 0.00012 33.9 4.0 29 745-773 9-37 (74)
69 cd01805 RAD23_N Ubiquitin-like 70.8 6.4 0.00014 33.5 4.2 29 745-773 11-41 (77)
70 PF02192 PI3K_p85B: PI3-kinase 68.4 6.5 0.00014 34.3 3.7 27 747-773 2-28 (78)
71 smart00143 PI3K_p85B PI3-kinas 63.9 4.9 0.00011 35.0 2.0 27 747-773 2-28 (78)
72 cd01804 midnolin_N Ubiquitin-l 63.8 11 0.00023 32.6 4.2 29 745-773 12-40 (78)
73 cd01797 NIRF_N amino-terminal 60.7 9.2 0.0002 33.1 3.2 32 748-783 15-47 (78)
74 cd01788 ElonginB Ubiquitin-lik 60.1 8.4 0.00018 35.9 2.9 35 739-773 6-40 (119)
75 PF05408 Peptidase_C28: Foot-a 59.1 12 0.00025 37.8 4.0 34 113-148 130-164 (193)
76 cd01792 ISG15_repeat1 ISG15 ub 58.5 13 0.00029 32.1 3.9 29 745-773 13-41 (80)
77 cd01808 hPLIC_N Ubiquitin-like 55.6 17 0.00037 30.5 4.0 26 747-772 12-37 (71)
78 COG5560 UBP12 Ubiquitin C-term 54.1 23 0.00049 42.1 5.8 64 410-475 45-110 (823)
79 cd01815 BMSC_UbP_N Ubiquitin-l 49.2 15 0.00032 31.9 2.6 29 752-783 18-48 (75)
80 cd00196 UBQ Ubiquitin-like pro 48.3 26 0.00057 26.4 3.8 29 745-773 8-36 (69)
81 cd01763 Sumo Small ubiquitin-r 44.7 36 0.00077 30.0 4.4 29 745-773 22-50 (87)
82 PF13881 Rad60-SLD_2: Ubiquiti 40.7 29 0.00063 32.4 3.3 30 739-768 6-37 (111)
83 COG3478 Predicted nucleic-acid 38.4 24 0.00051 29.6 2.0 36 34-69 3-40 (68)
84 cd01778 RASSF1_RA Ubiquitin-li 36.6 57 0.0012 29.7 4.3 49 732-783 3-52 (96)
85 cd06406 PB1_P67 A PB1 domain i 36.5 51 0.0011 29.0 3.9 37 745-786 11-47 (80)
86 KOG1887 Ubiquitin carboxyl-ter 34.0 18 0.00038 44.1 0.9 87 51-147 676-766 (806)
87 PF00788 RA: Ras association ( 28.9 97 0.0021 26.8 4.6 28 745-772 17-44 (93)
88 COG5629 Predicted metal-bindin 25.0 41 0.00089 35.8 1.7 88 328-446 86-173 (321)
89 PF11164 DUF2948: Protein of u 23.7 3.5E+02 0.0076 26.3 7.6 72 54-126 31-105 (138)
90 cd01790 Herp_N Homocysteine-re 23.5 1.1E+02 0.0023 26.9 3.7 24 746-769 15-38 (79)
91 PF11470 TUG-UBL1: GLUT4 regul 22.2 1.4E+02 0.0029 25.2 4.0 28 746-773 8-35 (65)
92 KOG0001 Ubiquitin and ubiquiti 21.9 1.4E+02 0.0029 23.8 4.0 29 745-773 10-38 (75)
No 1
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.4e-36 Score=332.37 Aligned_cols=183 Identities=48% Similarity=0.805 Sum_probs=160.3
Q ss_pred CCcceEEEeeCCCCCCHHHHHHhcccceEecCCCceecCCCCceeeEEEEEEEeecCCeeEEEEeeeEEeCCCCceeccc
Q 003922 1 MEDFYELELNVKGLKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKKKIT 80 (786)
Q Consensus 1 ~E~F~~LsL~i~~~~sL~d~L~~f~~~E~L~gdn~y~Ce~C~~~~~a~k~~~i~~lP~vLiihLkRF~~d~~~~~~~Ki~ 80 (786)
.|+|+.|+|+|++..+|++||+.|+.+|.|+|+|+|.|++|+.+++|.|+..|.+||+||+|||+||.|+..++...|++
T Consensus 142 ~e~f~~l~l~i~~~~sl~~~L~~~~~~e~l~g~~~~~C~~C~~~~~a~k~~~i~~lP~iLii~LkRf~~d~~~~~~~Ki~ 221 (324)
T cd02668 142 PSKFYELELQLKGHKTLEECIDEFLKEEQLTGDNQYFCESCNSKTDATRRIRLTTLPPTLNFQLLRFVFDRKTGAKKKLN 221 (324)
T ss_pred ccccEEEEEEecccCCHHHHHHHhhCceecCCCccccCCCCCceeeeEEEEEecCCCCeEEEEEEcceeecccCcceeCC
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999888899999
Q ss_pred ceeecccccccccccCCCCCCCceeEEEEEEEeeccccCCceEEEEEEecCCCcEEEEcCCceeecCCCCCCCCCCCCCC
Q 003922 81 SPFCFPGELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGHHPFGEGSSSSGS 160 (786)
Q Consensus 81 ~~V~fP~~Ldl~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vr~~~~~~W~~fnD~~Vt~v~~~~~~~~~~~~~~ 160 (786)
+.|.||..|||.+|+.........|+|+|||+|.|.++++|||+||+|+..+++||+|||+.|++++.+.+.+..++.+.
T Consensus 222 ~~v~fp~~Ldl~~~~~~~~~~~~~Y~L~~vI~H~G~~~~~GHY~~~~k~~~~~~W~~fdD~~V~~i~~~~~~~~~~~~~~ 301 (324)
T cd02668 222 ASISFPEILDMGEYLAESDEGSYVYELSGVLIHQGVSAYSGHYIAHIKDEQTGEWYKFNDEDVEEMPGKPLKLGNSEDPA 301 (324)
T ss_pred cEEECCCeEechhhcccccCCCcEEEEEEEEEEcCCCCCCEeeEEEEECCCCCcEEEEECCceEEcCHHHhhcccccccc
Confidence 99999999999999876554578999999999999878999999999987679999999999999998877665443321
Q ss_pred ccccCCCccccCccccccccCCCCcccCCCCccccCCCccccccCCceEEEEEE
Q 003922 161 KVVRSEPVVCQPVSERVEGANENHVDVHLPSSEYYNGSNVERFTSNDAYMLMYN 214 (786)
Q Consensus 161 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~AYmL~Y~ 214 (786)
++ .......+.+.+.+||||||+
T Consensus 302 ~~-------------------------------~~~~~~~~~~~~~~~y~l~y~ 324 (324)
T cd02668 302 KP-------------------------------RKSEIKKGTHSSRTAYMLVYK 324 (324)
T ss_pred cc-------------------------------cccccCCCccccCceEEEEeC
Confidence 11 011123447789999999995
No 2
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-36 Score=335.96 Aligned_cols=143 Identities=34% Similarity=0.703 Sum_probs=136.9
Q ss_pred CCcceEEEeeCCCCCCHHHHHHhcccceEecCCCceecCCCCceeeEEEEEEEeecCCeeEEEEeeeEEeCCCCceeccc
Q 003922 1 MEDFYELELNVKGLKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKKKIT 80 (786)
Q Consensus 1 ~E~F~~LsL~i~~~~sL~d~L~~f~~~E~L~gdn~y~Ce~C~~~~~a~k~~~i~~lP~vLiihLkRF~~d~~~~~~~Ki~ 80 (786)
+|+.++|+|+|.+..||++||++|+.+|.|+|+|+|.|++|+++++|.|+.+|.++|+||+||||||.+ +...||+
T Consensus 252 yE~~~dltvei~d~~sl~~AL~qFt~~E~L~gen~Y~C~~Ck~~v~A~K~lti~raPnVLTi~LKRF~~----~~~gKI~ 327 (545)
T KOG1865|consen 252 YEPYLDLTLEIQDASSLQQALEQFTKPEKLDGENAYHCGRCKQKVPASKQLTIHRAPNVLTLHLKRFSN----GTGGKIS 327 (545)
T ss_pred cccccceEEEeccchhHHHHHHHhhhHHhhCCccccccchhhhhCcccceeeeecCCceEEEeeehhcc----Ccccccc
Confidence 589999999999999999999999999999999999999999999999999999999999999999996 6678999
Q ss_pred ceeecccccccccccCCCCCCCceeEEEEEEEeeccccCCceEEEEEEecCCCcEEEEcCCceeecCC
Q 003922 81 SPFCFPGELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGH 148 (786)
Q Consensus 81 ~~V~fP~~Ldl~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vr~~~~~~W~~fnD~~Vt~v~~ 148 (786)
..|.||+.|||.||++.+.+.+..|.|+|||+|.|.+..+|||+||||. .+|.||+|||+.|+.++.
T Consensus 328 K~I~fPE~LDl~PyMS~~~e~s~~Y~LYavlVH~g~~~~~GHY~cYvks-~~g~Wy~~DDS~V~~~~~ 394 (545)
T KOG1865|consen 328 KPVSFPETLDLQPYMSQPNEGSTVYKLYAVLVHLGTSCHSGHYFCYVKS-QNGQWYKMDDSEVTQSSI 394 (545)
T ss_pred cccCCcccccccccccCCCCCCceEEEEEEEEeccccccCCceEEEEEc-CCCceEEccCceeeeccc
Confidence 9999999999999999888779999999999999999999999999998 578999999999999964
No 3
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.2e-35 Score=316.62 Aligned_cols=149 Identities=30% Similarity=0.608 Sum_probs=137.0
Q ss_pred CCcceEEEeeCCCCCCHHHHHHhcccceEecCCCceecCCCCceeeEEEEEEEeecCCeeEEEEeeeEEeCCCCceeccc
Q 003922 1 MEDFYELELNVKGLKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKKKIT 80 (786)
Q Consensus 1 ~E~F~~LsL~i~~~~sL~d~L~~f~~~E~L~gdn~y~Ce~C~~~~~a~k~~~i~~lP~vLiihLkRF~~d~~~~~~~Ki~ 80 (786)
.|+|++|+|+|++..+|++||+.|+.+|.|+|+|+|+|++|+.+++|+|+..|.++|+||+|||+||.|+...+...|++
T Consensus 133 ~e~f~~Lsl~i~~~~sl~~~L~~~~~~E~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~ 212 (300)
T cd02663 133 DETFLDLSIDVEQNTSITSCLRQFSATETLCGRNKFYCDECCSLQEAEKRMKIKKLPKILALHLKRFKYDEQLNRYIKLF 212 (300)
T ss_pred cceeEEeccCCCCcCCHHHHHHHhhcccccCCCCcEECCCCCCceeEEEEEEeccCCceeEEEEEeEEeecccCCceecC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999998766789999
Q ss_pred ceeecccccccccccCCCCCCCceeEEEEEEEeeccccCCceEEEEEEecCCCcEEEEcCCceeecCCCCC
Q 003922 81 SPFCFPGELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGHHPF 151 (786)
Q Consensus 81 ~~V~fP~~Ldl~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vr~~~~~~W~~fnD~~Vt~v~~~~~ 151 (786)
++|.||.+|+|.++..........|+|+|||+|.|+++++|||+||+|+ ++.||+|||+.|++++...+
T Consensus 213 ~~v~fp~~L~~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~a~~k~--~~~W~~fdD~~V~~~~~~~v 281 (300)
T cd02663 213 YRVVFPLELRLFNTTDDAENPDRLYELVAVVVHIGGGPNHGHYVSIVKS--HGGWLLFDDETVEKIDENAV 281 (300)
T ss_pred ceEecCcEEeccccccccCCCCeEEEEEEEEEEecCCCCCCceEEEEEC--CCcEEEEcCCceEEcCHHHH
Confidence 9999999999998754444446899999999999987799999999997 78999999999999975433
No 4
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.3e-34 Score=315.36 Aligned_cols=146 Identities=30% Similarity=0.589 Sum_probs=132.7
Q ss_pred CCcceEEEeeCCCCCCHHHHHHhcccceEecCCCceecCCCCceeeEEEEEEEeecCCeeEEEEeeeEEeCCCCceeccc
Q 003922 1 MEDFYELELNVKGLKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKKKIT 80 (786)
Q Consensus 1 ~E~F~~LsL~i~~~~sL~d~L~~f~~~E~L~gdn~y~Ce~C~~~~~a~k~~~i~~lP~vLiihLkRF~~d~~~~~~~Ki~ 80 (786)
.|+|+.|+|+|+ +|++||+.|+.+|.|+|+|+|+|++|+.+++|.|+..|.++|+||+|||+||.||..++...|++
T Consensus 123 ~e~f~~l~L~i~---sl~~~l~~~~~~E~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~ 199 (327)
T cd02664 123 TERFRDLDLSFP---SVQDLLNYFLSPEKLTGDNQYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFSYDQKTHVREKIM 199 (327)
T ss_pred cccceeeecCCC---CHHHHHHHhcCeeEccCCCceeCCccCCccceeEEEEcccCChhhEEEeeeeEEccccCcceecC
Confidence 478999999998 89999999999999999999999999999999999999999999999999999999888889999
Q ss_pred ceeecccccccccccCCC-------------------CCCCceeEEEEEEEeeccccCCceEEEEEEecC----------
Q 003922 81 SPFCFPGELNMQRRLSEP-------------------SQLDLIYDLSAVLIHKGTAVNSGHYIALIKDEN---------- 131 (786)
Q Consensus 81 ~~V~fP~~Ldl~~~~~~~-------------------~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vr~~~---------- 131 (786)
++|.||..|||.++.... ......|+|+|||+|.|.++++|||+||+|+..
T Consensus 200 ~~v~fp~~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~Vi~H~G~~~~~GHY~a~~r~~~~~~~~~~~~~ 279 (327)
T cd02664 200 DNVSINEVLSLPVRVESKSSESPLEKKEEESGDDGELVTRQVHYRLYAVVVHSGYSSESGHYFTYARDQTDADSTGQECP 279 (327)
T ss_pred ceEecCCEEecCccccccccccccccccccccccccccCCCceEEEEEEEEEccCCCCCcceEEEEecCCcccccccccc
Confidence 999999999999886311 112579999999999998779999999999853
Q ss_pred ----------CCcEEEEcCCceeecCCC
Q 003922 132 ----------TGQWWEFDDEHVSNLGHH 149 (786)
Q Consensus 132 ----------~~~W~~fnD~~Vt~v~~~ 149 (786)
++.||+|||+.|++++..
T Consensus 280 ~~~~~~~~~~~~~W~~fnD~~V~~~~~~ 307 (327)
T cd02664 280 EPKDAEENDESKNWYLFNDSRVTFSSFE 307 (327)
T ss_pred ccccccccCCCCCEEEEeCCceEECCHH
Confidence 378999999999999754
No 5
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.8e-33 Score=306.79 Aligned_cols=144 Identities=31% Similarity=0.599 Sum_probs=129.6
Q ss_pred CCcceEEEeeCCCC-------------------CCHHHHHHhcccceEecCCCceecCCCCceeeEEEEEEEeecCCeeE
Q 003922 1 MEDFYELELNVKGL-------------------KTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLN 61 (786)
Q Consensus 1 ~E~F~~LsL~i~~~-------------------~sL~d~L~~f~~~E~L~gdn~y~Ce~C~~~~~a~k~~~i~~lP~vLi 61 (786)
.|+|++|+|+|++. .+|++||+.|+++|.|+|+|+|+|++|+.+++|+|+..|.++|+||+
T Consensus 147 ~E~f~~lsL~i~~~~~~~~~~~~~~~~~~~~~~~tL~~~L~~f~~~E~l~g~n~y~C~~C~~~~~a~k~~~~~~~P~vL~ 226 (332)
T cd02671 147 REDFQDISVPVQESELSKSEESSEISPDPKTEMKTLKWAISQFASVERIVGEDKYFCENCHHYTEAERSLLFDKLPEVIT 226 (332)
T ss_pred ecccEEEEEEeCCCcccccccccccccccccccCCHHHHHHHhCCcceecCCCCeeCCCCCCceeEEEEEEEecCCCEEE
Confidence 48999999999864 58999999999999999999999999999999999999999999999
Q ss_pred EEEeeeEEeCCC----CceecccceeecccccccccccCCCCCCCceeEEEEEEEeeccccCCceEEEEEEecCCCcEEE
Q 003922 62 FQLKRCVFLPKT----TMKKKITSPFCFPGELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWE 137 (786)
Q Consensus 62 ihLkRF~~d~~~----~~~~Ki~~~V~fP~~Ldl~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vr~~~~~~W~~ 137 (786)
|||+||.|+... +...|++++|.||..|||.++..... ...|+|+|||+|.|.++++|||+||+| ||+
T Consensus 227 i~LkRF~~~~~~~~~~~~~~Ki~~~v~fp~~L~~~~~~~~~~--~~~Y~L~~VI~H~G~~~~~GHY~a~vr------W~~ 298 (332)
T cd02671 227 IHLKCFAANGSEFDCYGGLSKVNTPLLTPLKLSLEEWSTKPK--NDVYRLFAVVMHSGATISSGHYTAYVR------WLL 298 (332)
T ss_pred EEeeeeccccccccccCCceecCccccCccccccccccCCCC--CCeEEEEEEEEEcCCCCCCCeEEEEEE------EEE
Confidence 999999987432 45689999999999999998765443 689999999999998779999999999 999
Q ss_pred EcCCceeecCCCCCC
Q 003922 138 FDDEHVSNLGHHPFG 152 (786)
Q Consensus 138 fnD~~Vt~v~~~~~~ 152 (786)
|||+.|+.++.+.+.
T Consensus 299 fdD~~V~~~~~~~~~ 313 (332)
T cd02671 299 FDDSEVKVTEEKDFL 313 (332)
T ss_pred EcCcceEEccHHHHH
Confidence 999999999865443
No 6
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-35 Score=327.63 Aligned_cols=231 Identities=29% Similarity=0.466 Sum_probs=181.0
Q ss_pred CcceEEEeeCCCCCCHHHHHHhcccceEecCCCceecCCCCceeeEEEEEEEeecCCeeEEEEeeeEEeCCCCceecccc
Q 003922 2 EDFYELELNVKGLKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKKKITS 81 (786)
Q Consensus 2 E~F~~LsL~i~~~~sL~d~L~~f~~~E~L~gdn~y~Ce~C~~~~~a~k~~~i~~lP~vLiihLkRF~~d~~~~~~~Ki~~ 81 (786)
|+|+.|+|+|. +.+|+++|++|++.|.|+|.|.|+|++|++|+...||+.|++||+||.||||||.||..++..+|-|.
T Consensus 234 E~F~~l~l~i~-~~nLeesLeqfv~gevlEG~nAYhCeKCdeK~~TvkRt~ik~LPsvl~IqLkRF~yD~e~~~~iK~n~ 312 (944)
T KOG1866|consen 234 ESFTTLNLDIR-HQNLEESLEQFVKGEVLEGANAYHCEKCDEKVDTVKRTCIKKLPSVLAIQLKRFDYDWERECAIKFND 312 (944)
T ss_pred ccceeeeeecc-cchHHHHHHHHHHHHHhcCcchhhhhhhhhhhHhHHHHHHhhCChhheehhhhccchhhhccccccch
Confidence 89999999999 78999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecccccccccccCCC-----------------CCCCceeEEEEEEEeeccccCCceEEEEEEec---CCCcEEEEcCC
Q 003922 82 PFCFPGELNMQRRLSEP-----------------SQLDLIYDLSAVLIHKGTAVNSGHYIALIKDE---NTGQWWEFDDE 141 (786)
Q Consensus 82 ~V~fP~~Ldl~~~~~~~-----------------~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vr~~---~~~~W~~fnD~ 141 (786)
.|.||.+|||.||+... +....+|+|+||++|+|.+ .+|||++||++. ..++||+|||.
T Consensus 313 ~frFP~~ldMePYtvsg~a~~e~~~~~~g~~~e~s~~t~~YeLvGVlvHSGqA-saGHYySfIk~rr~~~~~kWykfnD~ 391 (944)
T KOG1866|consen 313 YFRFPRELDMEPYTVSGVAKLEGENVESGQQLEQSAGTTKYELVGVLVHSGQA-SAGHYYSFIKQRRGEDGNKWYKFNDG 391 (944)
T ss_pred hcccchhhcCCceeehhhhhhccccCCcCcccccccCcceeEEEEEEEecccc-cCcchhhhhhhhccCCCCceEeccCc
Confidence 99999999999997431 1237899999999999995 999999999863 34799999999
Q ss_pred ceeecCCCCCCCCCCCCCCccccCCCccccCccccccccCCCCcccCCCCccccCCCccccccCCceEEEEEEecCcccc
Q 003922 142 HVSNLGHHPFGEGSSSSGSKVVRSEPVVCQPVSERVEGANENHVDVHLPSSEYYNGSNVERFTSNDAYMLMYNLRRDKED 221 (786)
Q Consensus 142 ~Vt~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~AYmL~Y~r~~~~~~ 221 (786)
.|++++.+++.. .|+++... +.+.. +.. .-.-.+||||||+|.++...
T Consensus 392 ~Vte~~~n~me~---------------~cfGGey~----q~~~~-----------~~~--rrR~WNAYmlFYer~~d~p~ 439 (944)
T KOG1866|consen 392 DVTECKMNEMEN---------------ECFGGEYM----QMMKR-----------MSY--RRRWWNAYMLFYERMDDIPT 439 (944)
T ss_pred cccccchhhHHH---------------Hhhcchhh----hcccc-----------cch--HHHhhhhHHHHHHHhcCCCc
Confidence 999998764432 23333221 11110 001 11568999999999886542
Q ss_pred cccccccccccchhhhhhhhhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 003922 222 SKRKDVVHDVNNMEIESEMIFFNDDIFLPSHLGKDIKELNRSYLDGCEQFKL 273 (786)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~l~~~V~~~N~~f~~~~~~~~~ 273 (786)
...-.. ++-......+.-+..|+.+.+.|..+|-.|+..+..|..
T Consensus 440 ~~~p~~-------~~~~l~~~s~ei~~~~~~i~r~vrd~n~kFm~nRd~~S~ 484 (944)
T KOG1866|consen 440 DDEPIR-------EILSLTIDSPEIIPMSSPIERSVRDQNVKFMHNRDQYSF 484 (944)
T ss_pred cccccc-------cccccccCCcccCCCchHHHHHHHHhhhhhhcccchhhH
Confidence 211100 000111112233557889999999999999988877743
No 7
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.1e-32 Score=295.46 Aligned_cols=143 Identities=29% Similarity=0.532 Sum_probs=128.4
Q ss_pred CCcceEEEeeCCC----CCCHHHHHHhcccceEecCCCceecCCCCceeeEEEEEEEeecCCeeEEEEeeeEEeCCCCce
Q 003922 1 MEDFYELELNVKG----LKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMK 76 (786)
Q Consensus 1 ~E~F~~LsL~i~~----~~sL~d~L~~f~~~E~L~gdn~y~Ce~C~~~~~a~k~~~i~~lP~vLiihLkRF~~d~~~~~~ 76 (786)
.|+|++|+|+++. ..+|++||+.|+.+|.|+|+|+|.|++|++ |+|+..|.++|++|+|||+||.|+... ..
T Consensus 93 ~E~f~~L~Lp~~~~~~~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~---a~k~~~i~~~P~~Lii~LkRF~~~~~~-~~ 168 (279)
T cd02667 93 YEPFLDLSLPRSDEIKSECSIESCLKQFTEVEILEGNNKFACENCTK---AKKQYLISKLPPVLVIHLKRFQQPRSA-NL 168 (279)
T ss_pred cccceEEecCCCcccCCCCCHHHHHHhhcCeeEecCCCcccCCccCc---eeeEeEhhhCCCeEEEEEeccccCccc-Cc
Confidence 4899999998753 569999999999999999999999999987 899999999999999999999998643 56
Q ss_pred ecccceeecccccccccccCCC-----CCCCceeEEEEEEEeeccccCCceEEEEEEecC--------------------
Q 003922 77 KKITSPFCFPGELNMQRRLSEP-----SQLDLIYDLSAVLIHKGTAVNSGHYIALIKDEN-------------------- 131 (786)
Q Consensus 77 ~Ki~~~V~fP~~Ldl~~~~~~~-----~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vr~~~-------------------- 131 (786)
.|+++.|.||.+|||.+|+... ......|+|+|||+|.|++ ++|||+||+|...
T Consensus 169 ~Ki~~~v~fP~~Ldl~~~~~~~~~~~~~~~~~~Y~L~~vi~H~G~~-~~GHY~a~v~~~~~~~~~~~~~~~~~~~~~~~~ 247 (279)
T cd02667 169 RKVSRHVSFPEILDLAPFCDPKCNSSEDKSSVLYRLYGVVEHSGTM-RSGHYVAYVKVRPPQQRLSDLTKSKPAADEAGP 247 (279)
T ss_pred eecCceEeCCCccchhhccCccccccccCCCceEEEEEEEEEeCCC-CCCEeEEEEEcCccccccccccccccccccCCC
Confidence 8999999999999999998762 2236899999999999997 9999999999743
Q ss_pred -CCcEEEEcCCceeecCC
Q 003922 132 -TGQWWEFDDEHVSNLGH 148 (786)
Q Consensus 132 -~~~W~~fnD~~Vt~v~~ 148 (786)
++.||+|||+.|++++.
T Consensus 248 ~~~~W~~~dD~~V~~v~~ 265 (279)
T cd02667 248 GSGQWYYISDSDVREVSL 265 (279)
T ss_pred CCCcEEEEECCccEECCH
Confidence 68999999999999964
No 8
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3e-32 Score=298.77 Aligned_cols=152 Identities=42% Similarity=0.761 Sum_probs=139.5
Q ss_pred CCcceEEEeeCCCCCCHHHHHHhcccceEecCCCceecCCCCceeeEEEEEEEeecCCeeEEEEeeeEEeCCCCceeccc
Q 003922 1 MEDFYELELNVKGLKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKKKIT 80 (786)
Q Consensus 1 ~E~F~~LsL~i~~~~sL~d~L~~f~~~E~L~gdn~y~Ce~C~~~~~a~k~~~i~~lP~vLiihLkRF~~d~~~~~~~Ki~ 80 (786)
.|+|+.|+|++++..+|++||+.|+.+|.++|+|+|.|++|+.++.+.|+..|.++|++|+|||+||.|+..++...|++
T Consensus 137 ~e~f~~l~l~i~~~~~l~~~l~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vLii~l~Rf~~~~~~~~~~K~~ 216 (334)
T cd02659 137 EEYFLDLQVAVKGKKNLEESLDAYVQGETLEGDNKYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRFEFDFETMMRIKIN 216 (334)
T ss_pred cccceEEEEEcCCCCCHHHHHHHhcCeeEecCCccEecCcCCCcccEEEEEEeecCCCEEEEEeeeeEEccccCcceeCC
Confidence 47999999999998999999999999999999999999999999999999999999999999999999998888899999
Q ss_pred ceeecccccccccccCCCC-----------CCCceeEEEEEEEeeccccCCceEEEEEEecCCCcEEEEcCCceeecCCC
Q 003922 81 SPFCFPGELNMQRRLSEPS-----------QLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGHH 149 (786)
Q Consensus 81 ~~V~fP~~Ldl~~~~~~~~-----------~~~~~Y~L~aVI~H~G~s~~sGHY~a~vr~~~~~~W~~fnD~~Vt~v~~~ 149 (786)
+.|.||..|||.+|+.... .....|+|+|||+|.|+ +++|||+||+|+..++.||.|||+.|++++.+
T Consensus 217 ~~v~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~vI~H~G~-~~~GHY~~~vk~~~~~~W~~~nD~~V~~i~~~ 295 (334)
T cd02659 217 DRFEFPLELDMEPYTEKGLAKKEGDSEKKDSESYIYELHGVLVHSGD-AHGGHYYSYIKDRDDGKWYKFNDDVVTPFDPN 295 (334)
T ss_pred ceEeCCceecCccccccccccccccccccCCCCeeEEEEEEEEecCC-CCCCCeEEEEECCCCCceEEEeCcccEECCHH
Confidence 9999999999999886532 22678999999999997 69999999999866799999999999999876
Q ss_pred CCCC
Q 003922 150 PFGE 153 (786)
Q Consensus 150 ~~~~ 153 (786)
.+.+
T Consensus 296 ~v~~ 299 (334)
T cd02659 296 DAEE 299 (334)
T ss_pred HHHH
Confidence 6543
No 9
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.4e-33 Score=311.60 Aligned_cols=213 Identities=32% Similarity=0.530 Sum_probs=174.0
Q ss_pred CCcceEEEeeCCCCCCHHHHHHhcccceEecCCCceecCCCCceeeEEEEEEEeecCCeeEEEEeeeEEeCCCCceeccc
Q 003922 1 MEDFYELELNVKGLKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKKKIT 80 (786)
Q Consensus 1 ~E~F~~LsL~i~~~~sL~d~L~~f~~~E~L~gdn~y~Ce~C~~~~~a~k~~~i~~lP~vLiihLkRF~~d~~~~~~~Ki~ 80 (786)
+|+|++|+|++++..+|+|+++.|.+.|.|+|+|+|+|++-| .++|.|-.-|.+|||||.||||||.||..+....|||
T Consensus 324 vedfwdiqlNvK~~knLqeSfr~yIqvE~l~GdN~Y~ae~~G-lqdAkKGViFeSlPpVlhlqLKRFeyDfe~d~mvKIN 402 (1089)
T COG5077 324 VEDFWDIQLNVKGMKNLQESFRRYIQVETLDGDNRYNAEKHG-LQDAKKGVIFESLPPVLHLQLKRFEYDFERDMMVKIN 402 (1089)
T ss_pred HHHHHHHHhcccchhhHHHHHHHhhhheeccCCccccccccc-chhhccceeeccCchHHHHHHHHhccccccCceeeec
Confidence 489999999999999999999999999999999999999966 7999999999999999999999999999999999999
Q ss_pred ceeecccccccccccCCCCCC----CceeEEEEEEEeeccccCCceEEEEEEecCCCcEEEEcCCceeecCCCCCCCCCC
Q 003922 81 SPFCFPGELNMQRRLSEPSQL----DLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGHHPFGEGSS 156 (786)
Q Consensus 81 ~~V~fP~~Ldl~~~~~~~~~~----~~~Y~L~aVI~H~G~s~~sGHY~a~vr~~~~~~W~~fnD~~Vt~v~~~~~~~~~~ 156 (786)
++.+||+++||.||++...+. .+.|.|+||++|.|. .+.|||+|++|...+|.||+|||+.||.++..++.+...
T Consensus 403 DryEFP~eiDl~pfld~da~ksen~d~vY~LygVlVHsGD-l~~GHyYallKpe~dg~WykfdDtrVtrat~kevleeNf 481 (1089)
T COG5077 403 DRYEFPLEIDLLPFLDRDADKSENSDAVYVLYGVLVHSGD-LHEGHYYALLKPEKDGRWYKFDDTRVTRATEKEVLEENF 481 (1089)
T ss_pred ccccCcchhccccccCchhhhhcccCcEEEEEEEEEeccc-cCCceEEEEeccccCCCceeecceehhhHHHHHHHHHhc
Confidence 999999999999999865432 589999999999999 699999999999889999999999999998766655554
Q ss_pred CCCCccccCCCccccCccccccccCCCCcccCCCCccccCCCccccccCCceEEEEEEecCcccccccccccccccchhh
Q 003922 157 SSGSKVVRSEPVVCQPVSERVEGANENHVDVHLPSSEYYNGSNVERFTSNDAYMLMYNLRRDKEDSKRKDVVHDVNNMEI 236 (786)
Q Consensus 157 ~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~AYmL~Y~r~~~~~~~~~~~~~~~~~~~~~ 236 (786)
|+.-- + ........+...-.+||||+|-|++... ..+.+
T Consensus 482 Ggd~~----------------------------~--~~k~r~~~~~kRfmsAYmLvYlRks~~d-----dLlnP------ 520 (1089)
T COG5077 482 GGDHP----------------------------Y--KDKIRDHSGIKRFMSAYMLVYLRKSMLD-----DLLNP------ 520 (1089)
T ss_pred CCCCC----------------------------C--cccccCCchhhhhhhhheeeeehHhHHH-----hhhCc------
Confidence 43100 0 0011112223445789999999988543 11111
Q ss_pred hhhhhhcCCCCCCChHHHHHHHHHHHH
Q 003922 237 ESEMIFFNDDIFLPSHLGKDIKELNRS 263 (786)
Q Consensus 237 ~~~~~~~~~~~~lP~~l~~~V~~~N~~ 263 (786)
-....+|+|+.+.+.+.=..
T Consensus 521 -------V~a~diP~hv~e~l~eei~~ 540 (1089)
T COG5077 521 -------VAAVDIPPHVEEVLSEEIDK 540 (1089)
T ss_pred -------hhhhhCCHHHHHhhCHHHHH
Confidence 13346899999887765433
No 10
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.4e-32 Score=302.23 Aligned_cols=148 Identities=32% Similarity=0.622 Sum_probs=136.0
Q ss_pred CcceEEEeeCCC------CCCHHHHHHhcccceEecCCCceecCCCCceeeEEEEEEEeecCCeeEEEEeeeEEeCCCCc
Q 003922 2 EDFYELELNVKG------LKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTM 75 (786)
Q Consensus 2 E~F~~LsL~i~~------~~sL~d~L~~f~~~E~L~gdn~y~Ce~C~~~~~a~k~~~i~~lP~vLiihLkRF~~d~~~~~ 75 (786)
+.|++|.|+|+. ..|++++|..|.+||.|+|.|+|-|++|+++++|.|-..|..+|-+|.||||||.||.+|+.
T Consensus 195 d~fld~pl~v~pfg~~~ay~sieeal~afvqpe~ldg~nqy~ce~ck~k~dahkgl~~~~fpy~lt~~lkrfdfdy~tmh 274 (1203)
T KOG4598|consen 195 DYFLDLPLAVKPFGAIHAYKSVEEALTAFVQPELLDGSNQYMCENCKSKQDAHKGLRITQFPYLLTIQLKRFDFDYNTMH 274 (1203)
T ss_pred ceeecccccccCCcchhhhhhHHHHHHHhcChhhcCCccHHHHhhhhhhhhhhcCceeeccceeeEEeeecccccchhee
Confidence 579999999976 35899999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccceeecccccccccccCCCC--------------------------------------------------------
Q 003922 76 KKKITSPFCFPGELNMQRRLSEPS-------------------------------------------------------- 99 (786)
Q Consensus 76 ~~Ki~~~V~fP~~Ldl~~~~~~~~-------------------------------------------------------- 99 (786)
+.|+|++++||..|||..|+....
T Consensus 275 riklnd~~tfp~~l~ln~~in~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~s~~~~~~~~n~~~g~~~~ 354 (1203)
T KOG4598|consen 275 RIKLNDKMTFPDVLDLNDYVNKEKRSTTSSAWQQIGKNKSENEEDDMELGSPNPKRCTPGVQSPNRYQGSENVCVGQPID 354 (1203)
T ss_pred eeeecccccCcccccHHHhhhhccCCcchhHhhhcccccccccccccccCCCCcccCcccccCcccccCccccccCCcCc
Confidence 999999999999999999874210
Q ss_pred ----------CCCceeEEEEEEEeeccccCCceEEEEEEecCCCcEEEEcCCceeecCCCC
Q 003922 100 ----------QLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGHHP 150 (786)
Q Consensus 100 ----------~~~~~Y~L~aVI~H~G~s~~sGHY~a~vr~~~~~~W~~fnD~~Vt~v~~~~ 150 (786)
.+++.|+|+||.+|+|++ .+|||+||||+..+++||.|||.+|+.+....
T Consensus 355 ~~~~~~~~~~sg~~~yelf~imihsg~a-~gghy~ayik~~d~~~w~~fnd~~v~~~t~~~ 414 (1203)
T KOG4598|consen 355 HAAVDDIVKTSGDNVYELFSVMVHSGNA-AGGHYFAYIKNLDQDRWYVFNDTRVDFATPLE 414 (1203)
T ss_pred hhhhhhHhhcCCccHHHhhhhheecCCC-CCceeeeeecccCcCceEEecCccccccCHHH
Confidence 026899999999999995 99999999999999999999999999987543
No 11
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=8.6e-31 Score=283.78 Aligned_cols=142 Identities=28% Similarity=0.456 Sum_probs=128.0
Q ss_pred CCcceEEEeeCCCC---CCHHHHHHhcccceEecCCCceecCCCCceeeEEEEEEEeecCCeeEEEEeeeEEeCCCCcee
Q 003922 1 MEDFYELELNVKGL---KTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKK 77 (786)
Q Consensus 1 ~E~F~~LsL~i~~~---~sL~d~L~~f~~~E~L~gdn~y~Ce~C~~~~~a~k~~~i~~lP~vLiihLkRF~~d~~~~~~~ 77 (786)
.|+|++|+|+|++. .+|++||..+++++.. ..|+.|+....++|+.+|.++|++|+|||+||.|+...+...
T Consensus 143 ~e~f~~Lsl~i~~~~~~~~l~~~L~~~~~~~~~-----~~~~~~~~~~~~~k~~~i~~lP~vLii~LkRF~~~~~~~~~~ 217 (305)
T cd02657 143 TESEYKLQCHISITTEVNYLQDGLKKGLEEEIE-----KHSPTLGRDAIYTKTSRISRLPKYLTVQFVRFFWKRDIQKKA 217 (305)
T ss_pred cccceEEEeecCCCcccccHHHHHHHhhhhhhh-----hcCcccCCCceEEEEEEeccCCcEEEEEEECCccccccCcee
Confidence 48999999999875 6899999999987754 469999999999999999999999999999999998778889
Q ss_pred cccceeecccccccccccCCCCCCCceeEEEEEEEeeccccCCceEEEEEEecCCCcEEEEcCCceeecCCCCC
Q 003922 78 KITSPFCFPGELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGHHPF 151 (786)
Q Consensus 78 Ki~~~V~fP~~Ldl~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vr~~~~~~W~~fnD~~Vt~v~~~~~ 151 (786)
|+++.|.||.+|||.+|+.. ...|+|+|||+|.|.++++|||+||+|+..++.||+|||+.|+.++...+
T Consensus 218 Ki~~~v~fP~~Ldl~~~~~~----~~~Y~L~~vI~H~G~~~~~GHY~~~~~~~~~~~W~~fdD~~V~~~~~~~v 287 (305)
T cd02657 218 KILRKVKFPFELDLYELCTP----SGYYELVAVITHQGRSADSGHYVAWVRRKNDGKWIKFDDDKVSEVTEEDI 287 (305)
T ss_pred ecCcEEECCceEecccccCC----CCcEEEEEEEEecCCCCCCcEEEEEEEcCCCCeEEEEECCceEEeCHHHH
Confidence 99999999999999999873 56899999999999767999999999986559999999999999985433
No 12
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=1.4e-30 Score=284.84 Aligned_cols=144 Identities=37% Similarity=0.662 Sum_probs=130.5
Q ss_pred CCcceEEEeeCCCC---------------CCHHHHHHhcccceEecCCCceecCCCCceeeEEEEEEEeecCCeeEEEEe
Q 003922 1 MEDFYELELNVKGL---------------KTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLK 65 (786)
Q Consensus 1 ~E~F~~LsL~i~~~---------------~sL~d~L~~f~~~E~L~gdn~y~Ce~C~~~~~a~k~~~i~~lP~vLiihLk 65 (786)
.|+|+.|+|++++. .+|++||+.|+.+|.+++.| |+|++|+.++.+.|+..|.+||++|+|||+
T Consensus 147 ~e~f~~lsl~i~~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~~~~~~-~~C~~C~~~~~~~~~~~i~~lP~~Lii~lk 225 (328)
T cd02660 147 VDPFLDLSLDIPNKSTPSWALGESGVSGTPTLSDCLDRFTRPEKLGDFA-YKCSGCGSTQEATKQLSIKKLPPVLCFQLK 225 (328)
T ss_pred ecccceeeeeccccccccccccccCCCCCCCHHHHHHHhcCccccCCCC-ccCCCCCCccceEEEEEecCCCceeEEEEE
Confidence 47899999999875 89999999999999999888 999999999999999999999999999999
Q ss_pred eeEEeCCCCceecccceeecccccccccccCC---------CCCCCceeEEEEEEEeeccccCCceEEEEEEecCCCcEE
Q 003922 66 RCVFLPKTTMKKKITSPFCFPGELNMQRRLSE---------PSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWW 136 (786)
Q Consensus 66 RF~~d~~~~~~~Ki~~~V~fP~~Ldl~~~~~~---------~~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vr~~~~~~W~ 136 (786)
||.|+.. +...|+++.|.||.+|||.+|+.. .......|+|+|||+|.|+ .++|||+||+|+. +++||
T Consensus 226 Rf~~~~~-~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~-~~~GHY~~~~~~~-~~~W~ 302 (328)
T cd02660 226 RFEHSLN-KTSRKIDTYVQFPLELNMTPYTSSSIGDTQDSNSLDPDYTYDLFAVVVHKGT-LDTGHYTAYCRQG-DGQWF 302 (328)
T ss_pred eEEecCC-CCCcCCCcEEeCCCEechhhhcccccccccccccCCCCceEEEEEEEEeecc-CCCCcEEEEEECC-CCcEE
Confidence 9999864 566899999999999999999874 1223789999999999998 5899999999984 48999
Q ss_pred EEcCCceeecCC
Q 003922 137 EFDDEHVSNLGH 148 (786)
Q Consensus 137 ~fnD~~Vt~v~~ 148 (786)
.|||+.|++++.
T Consensus 303 ~~nD~~V~~~~~ 314 (328)
T cd02660 303 KFDDAMITRVSE 314 (328)
T ss_pred EEECCeeEECCH
Confidence 999999999974
No 13
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=3.7e-30 Score=277.48 Aligned_cols=143 Identities=34% Similarity=0.706 Sum_probs=133.4
Q ss_pred CCcceEEEeeCCCCCCHHHHHHhcccceEecCCCceecCCCCceeeEEEEEEEeecCCeeEEEEeeeEEeCCCCceeccc
Q 003922 1 MEDFYELELNVKGLKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKKKIT 80 (786)
Q Consensus 1 ~E~F~~LsL~i~~~~sL~d~L~~f~~~E~L~gdn~y~Ce~C~~~~~a~k~~~i~~lP~vLiihLkRF~~d~~~~~~~Ki~ 80 (786)
.|+|+.|+|++++..+|+++|+.|+.+|.++|+++|.|++|+.++.+.++..|.++|++|+|||+||.|+ ...|++
T Consensus 148 ~e~~~~l~l~i~~~~~l~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~iL~i~l~Rf~~~----~~~Ki~ 223 (304)
T cd02661 148 YDPFLDLSLDIKGADSLEDALEQFTKPEQLDGENKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFSNF----RGGKIN 223 (304)
T ss_pred cccceeeeeecCCCCcHHHHHHHhcCceeeCCCCCeeCCCCCCccceEEEEEEecCCcEEEEEEeccccC----CccccC
Confidence 3789999999999899999999999999999999999999999999999999999999999999999987 457999
Q ss_pred ceeecccccccccccCCCCCCCceeEEEEEEEeeccccCCceEEEEEEecCCCcEEEEcCCceeecCC
Q 003922 81 SPFCFPGELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGH 148 (786)
Q Consensus 81 ~~V~fP~~Ldl~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vr~~~~~~W~~fnD~~Vt~v~~ 148 (786)
+.|.||.+|||.+|+.........|+|+|||+|.|.++++|||+||+|+ .+++||.|||+.|++++.
T Consensus 224 ~~v~f~~~L~l~~~~~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~-~~~~W~~~nD~~V~~v~~ 290 (304)
T cd02661 224 KQISFPETLDLSPYMSQPNDGPLKYKLYAVLVHSGFSPHSGHYYCYVKS-SNGKWYNMDDSKVSPVSI 290 (304)
T ss_pred CeEecCCeechhhccccCCCCCceeeEEEEEEECCCCCCCcCCEEEEEC-CCCCEEEEeCCeeEECCH
Confidence 9999999999999998755557899999999999997799999999998 478999999999999964
No 14
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.96 E-value=3.3e-30 Score=266.76 Aligned_cols=132 Identities=29% Similarity=0.443 Sum_probs=115.8
Q ss_pred CCcceEEEeeCCCCCCHHHHHHhcccceEecCCCceecCCCCceeeEEEEEEEeecCCeeEEEEeeeEEeCCCCceeccc
Q 003922 1 MEDFYELELNVKGLKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKKKIT 80 (786)
Q Consensus 1 ~E~F~~LsL~i~~~~sL~d~L~~f~~~E~L~gdn~y~Ce~C~~~~~a~k~~~i~~lP~vLiihLkRF~~d~~~~~~~Ki~ 80 (786)
.|+|++|+|+|++..+|++||+.|+.+|.+++++.+. ...+.++..|.+||+||+||||||.|+. +...|++
T Consensus 79 ~E~F~~L~l~i~~~~~L~e~L~~~~~ee~l~~~~~~~------~~~~~~~~~i~~lP~vL~i~LkRF~~~~--~~~~Ki~ 150 (228)
T cd02665 79 CETFGQYPLQVNGYGNLHECLEAAMFEGEVELLPSDH------SVKSGQERWFTELPPVLTFELSRFEFNQ--GRPEKIH 150 (228)
T ss_pred cCccEEEEEEECCCCCHHHHHHHhhhhcccccccccc------hhhhhhhhhhhhCChhhEEEeEeeEEcC--CccEECC
Confidence 4899999999999999999999999999999854332 3446777889999999999999999986 6678999
Q ss_pred ceeecccccccccccCCCCCCCceeEEEEEEEeeccccCCceEEEEEEecCCCcEEEEcCCceeecCCCCCC
Q 003922 81 SPFCFPGELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGHHPFG 152 (786)
Q Consensus 81 ~~V~fP~~Ldl~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vr~~~~~~W~~fnD~~Vt~v~~~~~~ 152 (786)
+.|.||.+| ....|+|+|||+|.|+ +++|||++|+|+..++.||+|||+.|++++.+.+.
T Consensus 151 ~~v~FP~~l-----------~~~~Y~L~aVi~H~G~-~~~GHY~~~i~~~~~~~W~~fdD~~V~~~~~~~v~ 210 (228)
T cd02665 151 DKLEFPQII-----------QQVPYELHAVLVHEGQ-ANAGHYWAYIYKQSRQEWEKYNDISVTESSWEEVE 210 (228)
T ss_pred EEEEeeCcc-----------CCceeEEEEEEEecCC-CCCCEEEEEEEcCCCCEEEEEECCeeEEcCHHHHh
Confidence 999999887 1468999999999999 69999999999866899999999999999865443
No 15
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.96 E-value=2.8e-29 Score=260.48 Aligned_cols=145 Identities=34% Similarity=0.598 Sum_probs=130.5
Q ss_pred CCcceEEEeeCCCC------CCHHHHHHhcccceEecCCCceecCCCCceeeEEEEEEEeecCCeeEEEEeeeEEeCCCC
Q 003922 1 MEDFYELELNVKGL------KTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTT 74 (786)
Q Consensus 1 ~E~F~~LsL~i~~~------~sL~d~L~~f~~~E~L~gdn~y~Ce~C~~~~~a~k~~~i~~lP~vLiihLkRF~~d~~~~ 74 (786)
.|+|+.|+|+++.. .||+++|+.|+.+|.++|+++|.|++|+.++.+.|+..|.++|++|+|||+||.++. +
T Consensus 64 ~e~~~~l~l~ip~~~~~~~~~sl~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~iLii~l~R~~~~~--~ 141 (230)
T cd02674 64 FEPFTYLSLPIPSGSGDAPKVTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSR--G 141 (230)
T ss_pred ecceeEEEEecccccCCCCCCCHHHHHHHhcCccccCCCCceeCCCCCCccceEEEEEEecCChhhEeEhhheecCC--C
Confidence 37899999999864 499999999999999999999999999999999999999999999999999999976 6
Q ss_pred ceecccceeeccc-ccccccccCC-CCCCCceeEEEEEEEeeccccCCceEEEEEEecCCCcEEEEcCCceeecCC
Q 003922 75 MKKKITSPFCFPG-ELNMQRRLSE-PSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGH 148 (786)
Q Consensus 75 ~~~Ki~~~V~fP~-~Ldl~~~~~~-~~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vr~~~~~~W~~fnD~~Vt~v~~ 148 (786)
...|+++.|.||. .|||.+|+.. ......+|+|+|||+|.|.. ++|||+||+|...++.||.|||+.|++++.
T Consensus 142 ~~~K~~~~v~~~~~~l~l~~~~~~~~~~~~~~Y~L~~vI~H~G~~-~~GHY~~~~~~~~~~~W~~fnD~~V~~i~~ 216 (230)
T cd02674 142 STRKLTTPVTFPLNDLDLTPYVDTRSFTGPFKYDLYAVVNHYGSL-NGGHYTAYCKNNETNDWYKFDDSRVTKVSE 216 (230)
T ss_pred CcccCCceEeccccccccccccCcccCCCCceEEEEEEEEeeCCC-CCcEEEEEEECCCCCceEEEcCCeEEEcCH
Confidence 6789999999995 5999998532 22337899999999999997 999999999986568999999999999974
No 16
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.96 E-value=5.7e-29 Score=261.17 Aligned_cols=124 Identities=34% Similarity=0.659 Sum_probs=113.3
Q ss_pred CCcceEEEeeCCCC-----CCHHHHHHhcccceEecCCCceecCCCCceeeEEEEEEEeecCCeeEEEEeeeEEeCCCCc
Q 003922 1 MEDFYELELNVKGL-----KTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTM 75 (786)
Q Consensus 1 ~E~F~~LsL~i~~~-----~sL~d~L~~f~~~E~L~gdn~y~Ce~C~~~~~a~k~~~i~~lP~vLiihLkRF~~d~~~~~ 75 (786)
.|+|++|+|+|++. .+|++||+.|+.+|.++| |.|++| +..|.++|+||+|||+||.|+.. +.
T Consensus 77 ~e~f~~LsL~ip~~~~~~~~sl~~~L~~~~~~E~l~~---~~C~~C--------~~~i~~lP~vLii~LkRF~~~~~-~~ 144 (240)
T cd02662 77 YESFTMLSLPVPNQSSGSGTTLEHCLDDFLSTEIIDD---YKCDRC--------QTVIVRLPQILCIHLSRSVFDGR-GT 144 (240)
T ss_pred eeeeeeeEecccccCCCCCCCHHHHHHHhcCcccccC---cCCCCC--------eEEeecCCcEEEEEEEEEEEcCC-Cc
Confidence 37999999999875 599999999999999987 999999 67899999999999999999976 77
Q ss_pred eecccceeecccccccccccCCCCCCCceeEEEEEEEeeccccCCceEEEEEEec--------------------CCCcE
Q 003922 76 KKKITSPFCFPGELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDE--------------------NTGQW 135 (786)
Q Consensus 76 ~~Ki~~~V~fP~~Ldl~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vr~~--------------------~~~~W 135 (786)
..|+++.|.||..| ....|+|+|||+|.|++ ++|||+||+|+. ..+.|
T Consensus 145 ~~K~~~~v~fp~~l-----------~~~~Y~L~avi~H~G~~-~~GHY~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~W 212 (240)
T cd02662 145 STKNSCKVSFPERL-----------PKVLYRLRAVVVHYGSH-SSGHYVCYRRKPLFSKDKEPGSFVRMREGPSSTSHPW 212 (240)
T ss_pred eeeeccEEECCCcc-----------CCceEEEEEEEEEeccC-CCceEEEEEeCCCcccccccccccccccccCccCCCE
Confidence 89999999999988 26799999999999996 999999999985 34899
Q ss_pred EEEcCCceeecCC
Q 003922 136 WEFDDEHVSNLGH 148 (786)
Q Consensus 136 ~~fnD~~Vt~v~~ 148 (786)
|+|||+.|++++.
T Consensus 213 ~~fnD~~V~~v~~ 225 (240)
T cd02662 213 WRISDTTVKEVSE 225 (240)
T ss_pred EEEechheEEeCH
Confidence 9999999999964
No 17
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.95 E-value=4e-28 Score=263.81 Aligned_cols=131 Identities=36% Similarity=0.576 Sum_probs=117.1
Q ss_pred CcceEEEeeCCCC--------------CCHHHHHHhcccceEecCCCceecCCCCceeeEEEEEEEeecCCeeEEEEeee
Q 003922 2 EDFYELELNVKGL--------------KTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRC 67 (786)
Q Consensus 2 E~F~~LsL~i~~~--------------~sL~d~L~~f~~~E~L~gdn~y~Ce~C~~~~~a~k~~~i~~lP~vLiihLkRF 67 (786)
|+|++|+|+++.. .+|++||+.|+.+|.++ ++|++|+.++.|.|+.+|.+||+||+|||+||
T Consensus 151 e~~~~lsL~l~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~i~----~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF 226 (311)
T cd02658 151 ELSEILSLPVPKDEATEKEEGELVYEPVPLEDCLKAYFAPETIE----DFCSTCKEKTTATKTTGFKTFPDYLVINMKRF 226 (311)
T ss_pred cceeEEeeecccccccccccccccCCCCCHHHHHHHHcCccccc----ccccCCCCcccEEEEEEeecCCceEEEEeEEE
Confidence 7899999998743 39999999999999997 68999999999999999999999999999999
Q ss_pred EEeCCCCceecccceeecccccccccccCCCCCCCceeEEEEEEEeeccccCCceEEEEEEec--CCCcEEEEcCCceee
Q 003922 68 VFLPKTTMKKKITSPFCFPGELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDE--NTGQWWEFDDEHVSN 145 (786)
Q Consensus 68 ~~d~~~~~~~Ki~~~V~fP~~Ldl~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vr~~--~~~~W~~fnD~~Vt~ 145 (786)
.|+. ++...|++..|.||..| ....|+|+|||+|.|.++++|||+||+|.. .+++||.|||+.|++
T Consensus 227 ~~~~-~~~~~Ki~~~v~~p~~l-----------~~~~Y~L~~vI~H~G~~~~~GHY~~~vk~~~~~~~~W~~fnD~~V~~ 294 (311)
T cd02658 227 QLLE-NWVPKKLDVPIDVPEEL-----------GPGKYELIAFISHKGTSVHSGHYVAHIKKEIDGEGKWVLFNDEKVVA 294 (311)
T ss_pred EecC-CCceEeeccccccCCcC-----------CCCcEEEEEEEEccCCCCCCcceEEEEeCCCCCCCCEEEecCceeEE
Confidence 9974 45678999999999877 156899999999999878999999999985 348999999999999
Q ss_pred cCC
Q 003922 146 LGH 148 (786)
Q Consensus 146 v~~ 148 (786)
++.
T Consensus 295 ~~~ 297 (311)
T cd02658 295 SQD 297 (311)
T ss_pred CCc
Confidence 863
No 18
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.95 E-value=1.2e-28 Score=280.27 Aligned_cols=143 Identities=21% Similarity=0.316 Sum_probs=118.6
Q ss_pred CCcceEEEeeCCCCCC-----HHHHHHhcccceEecCCCceecCCCCceeeEEEEEEEeecCCeeEEEEeeeEEeCCCCc
Q 003922 1 MEDFYELELNVKGLKT-----LDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTM 75 (786)
Q Consensus 1 ~E~F~~LsL~i~~~~s-----L~d~L~~f~~~E~L~gdn~y~Ce~C~~~~~a~k~~~i~~lP~vLiihLkRF~~d~~~~~ 75 (786)
+|||++|+|+|++... ...+|.++...|.|+ +|.|+.|....+++|+.+|.+||+||+||||||.++. +.
T Consensus 275 ~~pF~~LsLdip~~~~~~~~~~~~~l~~~~l~e~L~---ky~~~~c~~~~~a~k~~~I~~LP~vLiihLKRF~~~~--~~ 349 (440)
T cd02669 275 VSPFLLLTLDLPPPPLFKDGNEENIIPQVPLKQLLK---KYDGKTETELKDSLKRYLISRLPKYLIFHIKRFSKNN--FF 349 (440)
T ss_pred eccceEEEecCCCCccccccccccccCcccHHHHHH---hcCCccceecccceEEEEEeeCCcEEEEEEecccCCC--Cc
Confidence 3799999999987422 123333444444454 3888999988999999999999999999999999975 66
Q ss_pred eecccceeecccc-cccccccCCCC---CCCceeEEEEEEEeeccccCCceEEEEEEecCCCcEEEEcCCceeecCC
Q 003922 76 KKKITSPFCFPGE-LNMQRRLSEPS---QLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGH 148 (786)
Q Consensus 76 ~~Ki~~~V~fP~~-Ldl~~~~~~~~---~~~~~Y~L~aVI~H~G~s~~sGHY~a~vr~~~~~~W~~fnD~~Vt~v~~ 148 (786)
.+|+++.|.||.. |||.+|+..+. .....|+|+|||+|.|+.+++|||+||+|+..+|+||+|||+.|++++.
T Consensus 350 ~~K~~t~V~FP~~~LDm~~y~~~~~~~~~~~~~Y~L~avI~H~G~~~~sGHY~a~v~~~~~~~W~~fdD~~V~~v~~ 426 (440)
T cd02669 350 KEKNPTIVNFPIKNLDLSDYVHFDKPSLNLSTKYNLVANIVHEGTPQEDGTWRVQLRHKSTNKWFEIQDLNVKEVLP 426 (440)
T ss_pred cccCCCEEECCCCccchhhhhCccccccCCCceEEEEEEEEEeccCCCCeeEEEEEEcCCCCeEEEEECCeeeEcCH
Confidence 7899999999996 89999986432 2378999999999999966999999999986689999999999999963
No 19
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.3e-27 Score=291.70 Aligned_cols=659 Identities=21% Similarity=0.174 Sum_probs=364.6
Q ss_pred CCcceEEEeeCCCCCCHHHHHHhcccceEecCCCceecCCCCceeeEEEEEEEeecCCeeEEEEeeeEEeCCCCceeccc
Q 003922 1 MEDFYELELNVKGLKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKKKIT 80 (786)
Q Consensus 1 ~E~F~~LsL~i~~~~sL~d~L~~f~~~E~L~gdn~y~Ce~C~~~~~a~k~~~i~~lP~vLiihLkRF~~d~~~~~~~Ki~ 80 (786)
.|+|++|.|+++|..+|.++|..|++.|+|+|||+ +|..|+..+.|.|...+.+||+||.|||+||.|+..++...|++
T Consensus 304 ~e~f~d~ql~~~g~~nl~~sf~~y~~~E~l~gdn~-~~~~~~~~~~a~k~~~f~~lPpvl~~qL~Rf~~~~~~~~~~Ki~ 382 (1093)
T KOG1863|consen 304 SESFLDLQLNGKGVKNLEDSLHLYFEAEILLGDNK-YDAECHGLQDAKKGVLFDSLPPVLFIQLMRFEYDFSTGQKIKIN 382 (1093)
T ss_pred cccccCccccccchhhHHHHHHHhhhHHHhcCCcc-ccccccchhhhhcceeeccCCchhhhhhhheeeeccCCceeehh
Confidence 48999999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred ceeecccccccccccCC----CCCCCceeEEEEEEEeeccccCCceEEEEEEecCCCcEEEEcCCceeecCCCCCCCCCC
Q 003922 81 SPFCFPGELNMQRRLSE----PSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGHHPFGEGSS 156 (786)
Q Consensus 81 ~~V~fP~~Ldl~~~~~~----~~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vr~~~~~~W~~fnD~~Vt~v~~~~~~~~~~ 156 (786)
+++.||..|+|.+|+.. .....+.|+|.||++|.|. +++|||++|+++...++|++|||..|+.++..++.+..+
T Consensus 383 d~~~fp~~i~~d~~~~~~~~~~~~~~~~y~l~~v~vh~g~-~~~ghy~~~i~~~~~~~w~kfdd~~v~~~~~~~~l~~~~ 461 (1093)
T KOG1863|consen 383 DKFEFPLIIDMDRYLSRFKAEESERSAVYSLHAVLVHSGD-AHSGHYVAYINPKLDGKWVKFDDLVVTVVSEKEALEQNY 461 (1093)
T ss_pred hccCCccccccchhccccchhhhhccceeccchhhccccc-ccCccceeeecchhhccceeccCceeeeccHHHHHHhhC
Confidence 99999999999999874 1122459999999999777 599999999998889999999999999998765555444
Q ss_pred CCCCccccCCCccccCccccccccCCCCcccCCCCccccCCCccccccCCceEEEEEEecCcccccccccccccccchhh
Q 003922 157 SSGSKVVRSEPVVCQPVSERVEGANENHVDVHLPSSEYYNGSNVERFTSNDAYMLMYNLRRDKEDSKRKDVVHDVNNMEI 236 (786)
Q Consensus 157 ~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~AYmL~Y~r~~~~~~~~~~~~~~~~~~~~~ 236 (786)
++... . .........||||+|.+.+....-.. +.
T Consensus 462 g~~~~---------------~---------------------~~~~~~~~~~~~lv~~~~s~~~~~~~-----~v----- 495 (1093)
T KOG1863|consen 462 GTEEI---------------E---------------------LSSTADFKNAYMLVYIRDSCESKILK-----DI----- 495 (1093)
T ss_pred CCcch---------------h---------------------hhcccccCCcceEEEEecCcHHhhhc-----cc-----
Confidence 43111 0 00011223399999999875431100 00
Q ss_pred hhhhhhcCCCCCCChHHHHHHHHHHH--------------------------------H-H--HHHHHHHHHHHhHhHhh
Q 003922 237 ESEMIFFNDDIFLPSHLGKDIKELNR--------------------------------S-Y--LDGCEQFKLRKNRELDC 281 (786)
Q Consensus 237 ~~~~~~~~~~~~lP~~l~~~V~~~N~--------------------------------~-f--~~~~~~~~~~k~~~l~~ 281 (786)
..-.+|.++.+....... . + +...+++...|....+.
T Consensus 496 --------~e~~i~~~l~~~~~~e~~~~~~k~k~~~~~~l~~~i~~~~~d~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 567 (1093)
T KOG1863|consen 496 --------SESSIPYHLSETLQKEKYKTEEKDKELEEARLSAVIRALSDDQLIKQHGFDVEDELYEPEQYRTLRAAKIEE 567 (1093)
T ss_pred --------chhhccHHHHHHhhhhhhhhhhhhhhhHHhhhhhhhhccCccchhhhccchHhhhhcccccchHHHHHhhhh
Confidence 000112222221111111 0 0 12334444444444444
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCeEEEeHHHHHHHhhccCCCCCCCccccccCCCCCCCCccccccccHHHHHHHHHHcC
Q 003922 282 ISERKQEVRSLLSEAPVPSLEEPFYWISSDWLRQWADKIFPSTLDNTSIQCLHGKVPESKIGSMKRISSKAWNKFFFKYN 361 (786)
Q Consensus 282 ~~e~rqev~~ll~~~~~~~~~~~~~~Is~~WL~~w~~~~~P~pIdN~~llC~Hg~l~p~k~~~~krIs~~aw~~L~~~yg 361 (786)
+.+..+. ++.....+...+..+|.-..|+ .....+...+|..-+|.|+...+.+... ++--.|..+...--
T Consensus 568 ~~eli~~---~~~~~~~~~~~~~~~w~~~~r~---~~~~~~~~~~n~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 638 (1093)
T KOG1863|consen 568 LSELITR---LLGEFELPPSVQPRLWPLGYRN---NLTVLPQYLFNIAPLRSYILDITEKVLN---DLWHEYLELAVEEI 638 (1093)
T ss_pred HHHHHHH---HHhhccCCccccchhhhhhccc---cceEeeecccccchhhhhhhhhhhhhcc---chHHHHHHHHhhhc
Confidence 4443333 3333333333345566665555 2223455788998999999988876443 44555555666555
Q ss_pred CCCCCCc---------hhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhhhcCCcccceEEEehHHHHHHHHhccCCCC
Q 003922 362 GGPALTN---------DDYCMTCLIDGAHTVVCADSYRDRRKSLKGLADDVLSGKLVEGTYYVSKSWLQQWTRRKNLDAP 432 (786)
Q Consensus 362 GgP~l~~---------~~~C~~C~~~~~~~~~~~~~l~~rr~~~k~l~~~~~~~~~~~~~y~ISk~WLr~W~k~k~~~~P 432 (786)
|+|.+.. ..++-.+....++.+.....+.-... .-..++.. ...+...|+...-++.|.
T Consensus 639 ~~~~~~~~~~~~~~~~~~lf~k~y~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~e~~~~~~d~~~~~~~-------- 706 (1093)
T KOG1863|consen 639 GGNEVRRLPSFQFTRDLLLFLKMYDDRKRSVTPSGELAYLAL---TPLRLLQV-LLNELIGVVDDTSTREYS-------- 706 (1093)
T ss_pred CcccccccccccchHHHHHHHHHhccccccccchhhcccccc---Cchhhhhh-hhhhhcccCCccchHHHH--------
Confidence 5554332 12222222211111111000000000 00000000 000001233333333332
Q ss_pred CCCCCCCCceeecCCCCcCCcccCCCceeeecHHHHHHHHHhhcccCCCCCCCCccCC-CCCCCchhhHHHHhhhhhhHH
Q 003922 433 SEADGGPTTSIRCPHGQLMPEKAGGAKRLLVPEILWLFIYEDAMKVKPDDLLGCSTFP-LDSEECPECSDALSEVACLED 511 (786)
Q Consensus 433 ~piDn~~n~dilC~HG~L~~~~~~~~~~~~V~~~~W~~L~~~f~~~gP~~~~~~~~f~-s~~~~C~~C~~~~~~~~~~~~ 511 (786)
.+.+.+....+.....+..|..-... |+ ...-....+ .+...+..+..+.......+.
T Consensus 707 ----------------e~~~~~~~~id~~~~~~~~~~~~~~d---~~--~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 765 (1093)
T KOG1863|consen 707 ----------------ELKEEKDERIDKIAEEKSFDLSELED---GD--ISVVEEEAASKDSESNRADVSEFLENVENRT 765 (1093)
T ss_pred ----------------Hhcchhhhcchhhhhhhhhhhhhhhc---CC--eeeecccccCCcccccccchHHHHHHHHHHH
Confidence 22222111112222222222221111 11 000000111 233444434333322111111
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCCCeeEEEchhhHHHHHHhcCCCCCCCC-CCCCcccccccccceeccccccccCC
Q 003922 512 SIRARKLKERQNHEKLALGKSIPLSLDCKYYLLPSTWLTKWRNYISPSGKNAS-SIEPEILDGVIDSLKCEKHLRLLERP 590 (786)
Q Consensus 512 ~~r~~~~~~r~~~~~l~~~k~~~~~~~~~~y~vp~~wl~~Wr~fv~~~~~~~~-~~~P~~id~~~~~l~C~~Hg~Ll~~p 590 (786)
..+-.+...-. ++ ..+++.....+-.-+..++-+|+.-+...+.... ...|-....++..++|..+.+++..+
T Consensus 766 ~~~~~~~~~~~-~~-----~~f~l~~~~~~~~~~~~~~v~~~l~~~p~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~ 839 (1093)
T KOG1863|consen 766 LQRFRKVSSEI-EE-----NSFVLGRQQRVTECILAVLVQLALGKDPISIDSDRAEYDLEKIRFNGTVKLSQVLLDATQL 839 (1093)
T ss_pred HHHHhcccccc-cc-----cccccchhhhhhhhHHHHHHHHHhcCCchhccccccCCchhhccccCcceeeccccccccc
Confidence 11110000000 00 0111111111122233455566655544332211 12222233445778885555554444
Q ss_pred CccccccCcccccCCCCCCceeeCHHHHHHHHHHhCCCcccceEEEEeccCCcCccccCccccccccCCCCCCCCccccc
Q 003922 591 PDLVCKRGSIYQKGSATDGLTIVTENDWKWFCEEWGGIKEKGLSVIVDFSNNAGNELVGSCKEILLSEEPCGPRDEENNE 670 (786)
Q Consensus 591 ~~~~~~~g~~~q~~~~~~~~~~Is~~eW~~l~~~yg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 670 (786)
......+..-....-.+.++.++-..+|++++..|+.....++...-... ++.+-....++....+..+ .....
T Consensus 840 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~k~~~i~~d~~~~~~~~~~--~~~~~ 913 (1093)
T KOG1863|consen 840 VRDPRERFVSLLKVQFVLPKTIVELLDLKYFKDEWLVDMENGVEIMTLAV----TKLGTILPDILREVYDRVP--LDPFK 913 (1093)
T ss_pred cccccccccccceecccCCcceeccccccccchhhhccccccchhhheec----cccchhhHHHHHHHHhhcc--cCccc
Confidence 44333333333333446678889999999999999998876652211111 1111111123322222221 22233
Q ss_pred cccCCceeecCcchhhHhhhhhhhHHHHhhhcccccceEEEEecCCCCcchhhhccCCCC-CCCccccccccccC--CeE
Q 003922 671 IESQRPVVRTFPEICEDCIGERESCELMQKLNYCDKDISVFLVRGKEAPRSILEASESMF-EPDRRASKRSRKTR--SFV 747 (786)
Q Consensus 671 ~~~~~~~~~~~p~vC~~C~~~~~~~~~~~~~~y~~~~i~v~~v~~~~~~~~~~~~~~~~~-~~~~R~s~r~r~~~--~~~ 747 (786)
.+.-.++..+.++++.+|......+++.....+.++=-.=...+|+++|....+.+.++. .-.+..+.+.++.. ...
T Consensus 914 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~~v~~~~~~~~~~~~~~~~~~~~~k~~~~n~~~~~ 993 (1093)
T KOG1863|consen 914 SDAFRLFEVTSMKLYKETSYQKLLEELNQSYQSFELLLRDLFLRGESVPLLEILSSKGAPKLELVIHFSKELVQNIGNEL 993 (1093)
T ss_pred ccceeEEeecchHHHHhccchhHHHHHhHHHhhHHhhhcccccccccCcHHHHhhcccccceeehhhcchhhhhhcchhh
Confidence 344467788999999999999888888777554311000066789999988777765543 44456666666433 677
Q ss_pred EEEecccccHHHHHHHHHHHhC
Q 003922 748 NLKVSASTSIYQLKMMIWESLG 769 (786)
Q Consensus 748 ~l~vs~~~t~~~lK~~i~~~~~ 769 (786)
.+++.--.+++++|+|++.-++
T Consensus 994 ~~~~~~~~~~~~~~~~~~~~~~ 1015 (1093)
T KOG1863|consen 994 NLLIVQGESLKENKDHLFDDLK 1015 (1093)
T ss_pred HHHhccchhHHHHHHHHHHHHH
Confidence 7788999999999999999998
No 20
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.94 E-value=4.3e-27 Score=245.48 Aligned_cols=121 Identities=22% Similarity=0.380 Sum_probs=105.4
Q ss_pred CcceEEEeeCC---CCCCHHHHHHhcccceEecCCCceecCCCCceeeEEEEEEEeecCCeeEEEEeeeEEeCCCCceec
Q 003922 2 EDFYELELNVK---GLKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKKK 78 (786)
Q Consensus 2 E~F~~LsL~i~---~~~sL~d~L~~f~~~E~L~gdn~y~Ce~C~~~~~a~k~~~i~~lP~vLiihLkRF~~d~~~~~~~K 78 (786)
|.|+.|.++.. +..||++||+.|+..|. |.++|++|+||||||.|+. +...|
T Consensus 64 e~~l~l~ip~~~~~~~~tLedcLe~~~~~e~-----------------------i~~lP~vLiIhLKRF~~~~--~~~~K 118 (241)
T cd02670 64 ERLLQIPVPDDDDGGGITLEQCLEQYFNNSV-----------------------FAKAPSCLIICLKRYGKTE--GKAQK 118 (241)
T ss_pred cceEEeecccCCCCCcCCHHHHHHHHhchhh-----------------------hhhCCCeEEEEEEccccCC--Cccee
Confidence 67888888864 35799999999999986 8899999999999999976 66789
Q ss_pred ccceeecccccccccccCCCC----------------------CCCceeEEEEEEEeeccccCCceEEEEEEecC-----
Q 003922 79 ITSPFCFPGELNMQRRLSEPS----------------------QLDLIYDLSAVLIHKGTAVNSGHYIALIKDEN----- 131 (786)
Q Consensus 79 i~~~V~fP~~Ldl~~~~~~~~----------------------~~~~~Y~L~aVI~H~G~s~~sGHY~a~vr~~~----- 131 (786)
+++.|.||..|||.+|+.... .....|+|+|||+|.|+++++|||+||+|+..
T Consensus 119 l~~~I~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G~s~~sGHYva~vr~~~~~~~~ 198 (241)
T cd02670 119 MFKKILIPDEIDIPDFVADDPRACSKCQLECRVCYDDKDFSPTCGKFKLSLCSAVCHRGTSLETGHYVAFVRYGSYSLTE 198 (241)
T ss_pred CCcEECCCCcCCchhhcccccccccccccccccccccccccCCCCCeEEEEEEEEEeCCCCCCCcCeEEEEECCcccccc
Confidence 999999999999999986531 12579999999999998789999999999865
Q ss_pred ------CCcEEEEcCCceeecC
Q 003922 132 ------TGQWWEFDDEHVSNLG 147 (786)
Q Consensus 132 ------~~~W~~fnD~~Vt~v~ 147 (786)
++.||.|||..|+.+.
T Consensus 199 ~~~~~~~~~W~~FDD~~v~~~~ 220 (241)
T cd02670 199 TDNEAYNAQWVFFDDMADRDGV 220 (241)
T ss_pred cccCCCCCeEEEecCccccccc
Confidence 3799999999988764
No 21
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.94 E-value=9e-27 Score=244.85 Aligned_cols=133 Identities=23% Similarity=0.342 Sum_probs=109.2
Q ss_pred CCcceEEEeeCCC--CCCHHHHHHhcccceEecCCCceecCCCCceeeEEEEEEEeecCCeeEEEEeeeEEeCCCCceec
Q 003922 1 MEDFYELELNVKG--LKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKKK 78 (786)
Q Consensus 1 ~E~F~~LsL~i~~--~~sL~d~L~~f~~~E~L~gdn~y~Ce~C~~~~~a~k~~~i~~lP~vLiihLkRF~~d~~~~~~~K 78 (786)
.|+|++|+|++++ ..+|+++++.|+..+.++ |.|++|+.+ .+.|+.+|.++|+||+||||||.|.....
T Consensus 94 ~e~~~~L~L~i~~~~~~~le~l~~~~~~~~~~e----~~C~~C~~~-~a~k~~~i~~~P~vL~i~lkRf~~~~~~~---- 164 (245)
T cd02673 94 SDVGNFLDVSMIDNKLDIDELLISNFKTWSPIE----KDCSSCKCE-SAISSERIMTFPECLSINLKRYKLRIATS---- 164 (245)
T ss_pred ccccceeccccccCCcchHHHHHHHhhcccccC----ccCCCCCCc-cceeechhhhCChhhEEeeEeeeeccccc----
Confidence 4789999999987 467889999998887775 899999975 78899999999999999999998764222
Q ss_pred ccceeecccccccccccCCCCCCCceeEEEEEEEeeccccCCceEEEEEEecC-CCcEEEEcCCceeecCCC
Q 003922 79 ITSPFCFPGELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDEN-TGQWWEFDDEHVSNLGHH 149 (786)
Q Consensus 79 i~~~V~fP~~Ldl~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vr~~~-~~~W~~fnD~~Vt~v~~~ 149 (786)
..+.+ ..++|.+|.. ....|+|+|||+|.|.++++|||+||+|+.. +++||.|||+.|++++..
T Consensus 165 --~~~~~-~~~~~~~~~~----~~~~Y~L~~VV~H~G~~~~~GHY~a~vk~~~~~~~Wy~fnD~~V~~v~~~ 229 (245)
T cd02673 165 --DYLKK-NEEIMKKYCG----TDAKYSLVAVICHLGESPYDGHYIAYTKELYNGSSWLYCSDDEIRPVSKN 229 (245)
T ss_pred --ccccc-cccccccccC----CCceEEEEEEEEECCCCCCCceEEEEEEcCCCCCeEEEeeCceeeEcCHH
Confidence 22222 2456777764 2568999999999998789999999999865 689999999999999743
No 22
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.9e-27 Score=263.22 Aligned_cols=133 Identities=27% Similarity=0.496 Sum_probs=122.0
Q ss_pred CCCHHHHHHhcccceEecCCCceecCCCCceeeEEEEEEEeecCCeeEEEEeeeEEeCCCCceecccceeeccc-ccccc
Q 003922 14 LKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKKKITSPFCFPG-ELNMQ 92 (786)
Q Consensus 14 ~~sL~d~L~~f~~~E~L~gdn~y~Ce~C~~~~~a~k~~~i~~lP~vLiihLkRF~~d~~~~~~~Ki~~~V~fP~-~Ldl~ 92 (786)
..||+|||..|.++|+|.-.+.|+|+.|+..+.|+|++.|+++|.+|+||||||.+++ ..+.|+.+-|+||. .|||+
T Consensus 674 tiTL~dCl~eFskpEqLgl~DswyCpgCkefrqasKqmelwrlP~iLiihLkRFss~r--sfrdKiddlVeyPiddldLs 751 (823)
T COG5560 674 TITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVR--SFRDKIDDLVEYPIDDLDLS 751 (823)
T ss_pred CCcHHHHHHHhccHhhcCCcccccCCchHhhhhhhhhhhhhcCChheeeehhhhhhcc--cchhhhhhhhcccccccccc
Confidence 4699999999999999999999999999999999999999999999999999999865 67889999999997 59999
Q ss_pred cccCCCCCCCceeEEEEEEEeeccccCCceEEEEEEecCCCcEEEEcCCceeecCCC
Q 003922 93 RRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGHH 149 (786)
Q Consensus 93 ~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vr~~~~~~W~~fnD~~Vt~v~~~ 149 (786)
.+...-.+....|+|+||=.|.|. +.+|||+||+|+..+++||.|||+.|++++.+
T Consensus 752 ~~~~~~~~p~liydlyavDNHygg-lsgGHYtAyarn~~n~~wy~fdDsritevdpe 807 (823)
T COG5560 752 GVEYMVDDPRLIYDLYAVDNHYGG-LSGGHYTAYARNFANNGWYLFDDSRITEVDPE 807 (823)
T ss_pred ceEEeecCcceEEEeeeccccccc-cCCcceeeeeecccCCceEEecCccccccCcc
Confidence 886654444689999999999999 59999999999998999999999999999743
No 23
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.93 E-value=4.5e-26 Score=242.62 Aligned_cols=144 Identities=19% Similarity=0.271 Sum_probs=123.7
Q ss_pred CCcceEEEeeCCC-----CCCHHHHHHhcccceEecCCCceecCCCCceeeEEEEEEEeecCC----eeEEEEeeeEEeC
Q 003922 1 MEDFYELELNVKG-----LKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPD----VLNFQLKRCVFLP 71 (786)
Q Consensus 1 ~E~F~~LsL~i~~-----~~sL~d~L~~f~~~E~L~gdn~y~Ce~C~~~~~a~k~~~i~~lP~----vLiihLkRF~~d~ 71 (786)
+++|++|+|+++. ..+|.+||+.|+.+|.. ++|.|++|++++.|.|+.+|.+||+ ||+||||||.++.
T Consensus 98 ~~~~~~LsLpip~~~~~~~~sl~~cL~~~~~~E~~---~~~~C~~C~~~~~a~k~~~i~~lP~~L~~VL~i~lkrf~~~~ 174 (268)
T cd02672 98 VSLLYTLSLPLGSTKTSKESTFLQLLKRSLDLEKV---TKAWCDTCCKYQPLEQTTSIRHLPDILLLVLVINLSVTNGEF 174 (268)
T ss_pred cccceeeeeecCccccccCCCHHHHHHHHhhhhhc---ccccccccCcccccEEEEEeecCCCcccceEEEEEeccChhh
Confidence 4789999999985 46999999999999854 5699999999999999999999999 9999999999754
Q ss_pred CC-----CceecccceeecccccccccccCCCCCCCceeEEEEEEEeeccccCCceEEEEEEecC----CCcEEEEcCCc
Q 003922 72 KT-----TMKKKITSPFCFPGELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDEN----TGQWWEFDDEH 142 (786)
Q Consensus 72 ~~-----~~~~Ki~~~V~fP~~Ldl~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vr~~~----~~~W~~fnD~~ 142 (786)
.. ....|++..|.||..+++..+..........|+|+|||+|.|.+.++|||+||+|... .++||.|||..
T Consensus 175 ~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~Y~L~gvV~hig~~~~~GHyva~vk~~~~~~~~~~WylFND~~ 254 (268)
T cd02672 175 DDINVVLPSGKVMQNKVSPKAIDHDKLVKNRGQESIYKYELVGYVCEINDSSRGQHNVVFVIKVNEESTHGRWYLFNDFL 254 (268)
T ss_pred cccCcceeEEEecCCeecccccccchhhhccCCCCCceEEEEEEEEEecCCCCCCcEEEEEEccCCCCCCCcEEEecCeE
Confidence 22 2356888999999988877766554444689999999999998668999999999753 57899999999
Q ss_pred eeecC
Q 003922 143 VSNLG 147 (786)
Q Consensus 143 Vt~v~ 147 (786)
|++++
T Consensus 255 V~~vs 259 (268)
T cd02672 255 VTPVS 259 (268)
T ss_pred EEEcC
Confidence 99984
No 24
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3.1e-25 Score=228.57 Aligned_cols=141 Identities=28% Similarity=0.495 Sum_probs=111.2
Q ss_pred CcceEEEeeCCC--CCCHHHHHHhcccceEecCCCceecCCCCceeeEEEEEEEeecCCeeEEEEeeeEEeCCCCceecc
Q 003922 2 EDFYELELNVKG--LKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKKKI 79 (786)
Q Consensus 2 E~F~~LsL~i~~--~~sL~d~L~~f~~~E~L~gdn~y~Ce~C~~~~~a~k~~~i~~lP~vLiihLkRF~~d~~~~~~~Ki 79 (786)
.+|..|.+++.. ...|+|||..|.++|.|+|+++|.|++|+.++.++|++.|.+||++|||||+||.-.- +.++||
T Consensus 249 a~fs~l~vp~~~v~~~~l~eC~~~f~~~e~L~g~d~W~CpkC~~k~ss~K~~~I~~lP~~LII~i~RF~i~V--~~~~ki 326 (415)
T COG5533 249 AMFSTLLVPPYEVVQLGLQECIDRFYEEEKLEGKDAWRCPKCGRKESSRKRMEILVLPDVLIIHISRFHISV--MGRKKI 326 (415)
T ss_pred eccceeeeccchheeecHHHHHHHhhhHHhhcCcccccCchhcccccchheEEEEecCceEEEEeeeeeEEe--eccccc
Confidence 578999999876 3468999999999999999999999999999999999999999999999999998422 334454
Q ss_pred cceeec----ccccccccccCCC-CCCCceeEEEEEEEeeccccCCceEEEEEEecCCCcEEEEcCCceeecC
Q 003922 80 TSPFCF----PGELNMQRRLSEP-SQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLG 147 (786)
Q Consensus 80 ~~~V~f----P~~Ldl~~~~~~~-~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vr~~~~~~W~~fnD~~Vt~v~ 147 (786)
++.-.. |-+....+-+... .-.+.+|.|+|||+|.|+ +++|||+++|+. ++.|+.|||+.|++++
T Consensus 327 D~p~gw~~~~~~e~~v~~~f~~~~~~~P~~Y~L~gv~Ch~G~-L~gGHY~s~v~~--~~~W~~~dDs~vr~~~ 396 (415)
T COG5533 327 DTPQGWKNTASVEVNVTLLFNNGIGYIPRKYSLLGVVCHNGT-LNGGHYFSEVKR--SGTWNVYDDSQVRKGS 396 (415)
T ss_pred CCCcchhccCCceecccccccCCCCCCccceeEEEEEeecce-ecCceeEEeeee--cCceEEechhheeecc
Confidence 443221 2111111111110 112689999999999999 799999999995 6999999999999986
No 25
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.4e-25 Score=257.18 Aligned_cols=144 Identities=30% Similarity=0.548 Sum_probs=128.2
Q ss_pred CCcceEEEeeCCC------CCCHHHHHHhcccceEecCCCceecCCCCceeeEE--EEEEEeecCCeeEEEEeeeEEeCC
Q 003922 1 MEDFYELELNVKG------LKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDAT--RSIKLRSLPDVLNFQLKRCVFLPK 72 (786)
Q Consensus 1 ~E~F~~LsL~i~~------~~sL~d~L~~f~~~E~L~gdn~y~Ce~C~~~~~a~--k~~~i~~lP~vLiihLkRF~~d~~ 72 (786)
+++|.+|+|+|+. ..+|++|+..|++.|.|+|+++|.|++|+.+.... |+..|.+||++|++||+||.++.
T Consensus 477 ~~~f~~lslpIp~~~~~~~~~~L~~C~~~ft~~ekle~~~~w~Cp~c~~~~~~~~lK~~~i~~lp~iLiihL~Rf~~~~- 555 (653)
T KOG1868|consen 477 FETFTDLSLPIPKKGFAGGKVSLEDCLSLFTKEEKLEGDEAWLCPRCKHKESSKTLKKLTILRLPKILIIHLKRFSSDG- 555 (653)
T ss_pred eecceeeEEecccccccccccchHhhhccccchhhcccccccCCccccCcccccccceeeeecCCHHHHHHHHHhccCc-
Confidence 4789999999964 24599999999999999999999999999998885 99999999999999999999986
Q ss_pred CCceecccceeeccc-ccccccccCCCCCCCceeEEEEEEEeeccccCCceEEEEEEecCCCcEEEEcCCceeecC
Q 003922 73 TTMKKKITSPFCFPG-ELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLG 147 (786)
Q Consensus 73 ~~~~~Ki~~~V~fP~-~Ldl~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vr~~~~~~W~~fnD~~Vt~v~ 147 (786)
+...|....|.||. .+|+.++..........|+|+||++|.|+ +++|||+||++....+.|+.|||+.|+.+.
T Consensus 556 -~~~~k~~~~v~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~Gt-l~sGHYta~~~~~~~~~W~~fdDs~Vs~~~ 629 (653)
T KOG1868|consen 556 -NSFNKLSTGVDFPLREADLSPRFAEKGNNPKSYRLYAVVNHSGT-LNSGHYTAYVYKNEKQRWFTFDDSEVSPIS 629 (653)
T ss_pred -ccccccceeeccchHhhhhchhccccCCCccceeeEEEEeccCc-ccCCceEEEEeecCCCceEEecCeeeeccc
Confidence 56689999999997 48888777666655677999999999996 799999999998777899999999999764
No 26
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.91 E-value=3.7e-24 Score=220.39 Aligned_cols=143 Identities=34% Similarity=0.628 Sum_probs=122.2
Q ss_pred cceEEEeeCCC----CCCHHHHHHhcccceEecCCCceecCCCC--ceeeEEEEEEEeecCCeeEEEEeeeEEeCCCCce
Q 003922 3 DFYELELNVKG----LKTLDESLDDYLSVEELHGDNQYFCDSCG--TRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMK 76 (786)
Q Consensus 3 ~F~~LsL~i~~----~~sL~d~L~~f~~~E~L~gdn~y~Ce~C~--~~~~a~k~~~i~~lP~vLiihLkRF~~d~~~~~~ 76 (786)
.|..++|+++. ..+|+++|+.++.+|.+++ +.|..|+ ..+.+.++..|.++|++|+|||+||.++.. +..
T Consensus 83 ~~~~l~l~~~~~~~~~~~l~~~l~~~~~~e~~~~---~~~~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~-~~~ 158 (255)
T cd02257 83 PELFLSLPLPVKGLPQVSLEDCLEKFFKEEILEG---DNCYKCEKKKKQEATKRLKIKKLPPVLIIHLKRFSFNED-GTK 158 (255)
T ss_pred cceeEEeeccCCCCCCCcHHHHHHHhhhhhccCC---CCcccCCCCcccceeEEEecccCCceeEEEeeceeeccc-ccc
Confidence 34455555543 5799999999999999987 7788887 678899999999999999999999998753 567
Q ss_pred ecccceeecccccccccccCC------CCCCCceeEEEEEEEeeccccCCceEEEEEEecCCCcEEEEcCCceeecCCC
Q 003922 77 KKITSPFCFPGELNMQRRLSE------PSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGHH 149 (786)
Q Consensus 77 ~Ki~~~V~fP~~Ldl~~~~~~------~~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vr~~~~~~W~~fnD~~Vt~v~~~ 149 (786)
.|++..|.||.+|++.+++.. .......|+|+|||+|.|.++++|||+||+|+..++.||.|||..|++++..
T Consensus 159 ~k~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~Y~L~~vi~h~G~~~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~~~ 237 (255)
T cd02257 159 EKLNTKVSFPLELDLSPYLSEGEKDSDSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDPSDGKWYKFNDDKVTEVSEE 237 (255)
T ss_pred ccCCCeEeCCCcccCccccccccccccccCCCccEEEEEEEEEecCCCCCcCeEEEEeCCCCCceEEEeccccEEcCHH
Confidence 899999999999999988752 2223789999999999999779999999999865699999999999999754
No 27
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.4e-24 Score=244.66 Aligned_cols=144 Identities=35% Similarity=0.636 Sum_probs=129.6
Q ss_pred CCcceEEEeeCCCC----------CCHHHHHHhcccceEecCCCceecCCCCceeeEEEEEEEeecCCeeEEEEeeeEEe
Q 003922 1 MEDFYELELNVKGL----------KTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFL 70 (786)
Q Consensus 1 ~E~F~~LsL~i~~~----------~sL~d~L~~f~~~E~L~gdn~y~Ce~C~~~~~a~k~~~i~~lP~vLiihLkRF~~d 70 (786)
.++|++|+|+|++. .++.+|+..|...+.+..++++.|..|+.++.++|+..|.++|.+|.+||+||.+.
T Consensus 310 ~dpf~disL~i~~~~~~~~~~~~~~~~~~cl~~~~~~~~~~~~~~~~c~~c~~~~~~~kql~~~~lP~~l~~~lkRfe~~ 389 (492)
T KOG1867|consen 310 YDPFMDISLDIPDQFTSSSVRSPELTLLDCLDRFTRSEQLGKDSKYKCSSCKSKQESTKQLTIRKLPAVLCLHLKRFEHS 389 (492)
T ss_pred ccCccceeeecchhccCcccccchhhhhhhhhhhhhhhhcCcccccccCCcccccccccccccccCCceeeeeecccccc
Confidence 47999999999753 56999999999999998899999999999999999999999999999999999998
Q ss_pred CCCCceecccceeecccccccccccCCCC-----CCCceeEEEEEEEeeccccCCceEEEEEEecCCCcEEEEcCCceee
Q 003922 71 PKTTMKKKITSPFCFPGELNMQRRLSEPS-----QLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSN 145 (786)
Q Consensus 71 ~~~~~~~Ki~~~V~fP~~Ldl~~~~~~~~-----~~~~~Y~L~aVI~H~G~s~~sGHY~a~vr~~~~~~W~~fnD~~Vt~ 145 (786)
...... |+.+.|.||..|+|.+|+..+. .....|+|.|||+|+|+ .++|||+||.|+ .+.||+|||+.|+.
T Consensus 390 ~~~~~~-ki~~~v~fp~~l~m~p~~~~~~~~~~~~~~~~Y~L~AVV~H~G~-~~SGHY~aY~r~--~~~~~~~dDs~v~~ 465 (492)
T KOG1867|consen 390 ATGARE-KIDSYVSFPVLLNMKPYCSSEKLKSQDNPDHLYELRAVVVHHGT-VGSGHYVAYRRQ--SGGWFKCDDSTVTK 465 (492)
T ss_pred cccccc-ccCcccccchhhcCCccccccccccCCCCCceEEEEEEEEeccC-CCCCceEEEEEe--CCCcEEEcCeEEEE
Confidence 754444 9999999999999999987521 12699999999999999 799999999996 68899999999999
Q ss_pred cCC
Q 003922 146 LGH 148 (786)
Q Consensus 146 v~~ 148 (786)
++.
T Consensus 466 ~s~ 468 (492)
T KOG1867|consen 466 VSE 468 (492)
T ss_pred eeH
Confidence 974
No 28
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=3.7e-24 Score=258.75 Aligned_cols=130 Identities=31% Similarity=0.582 Sum_probs=121.8
Q ss_pred CCCHHHHHHhcccceEecCCCceecCCCCceeeEEEEEEEeecCCeeEEEEeeeEEeCCCCceecccceeeccc-ccccc
Q 003922 14 LKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKKKITSPFCFPG-ELNMQ 92 (786)
Q Consensus 14 ~~sL~d~L~~f~~~E~L~gdn~y~Ce~C~~~~~a~k~~~i~~lP~vLiihLkRF~~d~~~~~~~Ki~~~V~fP~-~Ldl~ 92 (786)
..+|++||+.|+.+|.|.-+++|+|+.|+.++.|+|+..+++||+|||||||||.|.. ....|+.+.|+||. .||++
T Consensus 695 ~~sL~~cl~~F~~~E~L~~~~~w~C~~Cke~~~A~Kk~~lwrlPeiLiihLKrF~~~r--~~~~k~~~~v~fPi~~ld~s 772 (842)
T KOG1870|consen 695 PNSLESCLELFSEPETLGKDDRWYCPQCKELRQATKKLDLWRLPEILIIHLKRFQYSR--ESSSKVKTKVEFPLGSLDLS 772 (842)
T ss_pred cccHHHHHHhhcchhcCCccccccChHHHHHHHHhhhhhhhhCCceEEEEeecceeec--hhhhhhCccccCCCcCCCcc
Confidence 4699999999999999999999999999999999999999999999999999999976 55689999999997 59999
Q ss_pred cccCCCCCCCceeEEEEEEEeeccccCCceEEEEEEecCCCcEEEEcCCceeecCC
Q 003922 93 RRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGH 148 (786)
Q Consensus 93 ~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vr~~~~~~W~~fnD~~Vt~v~~ 148 (786)
+|+..... ..|+|+||.+|.|. +.+|||+||+|+..+++||.|||+.|++++.
T Consensus 773 ~~~~~~~~--~~Y~l~av~nHyG~-l~~GHYta~~k~~~~~~w~~fdDs~v~~~~~ 825 (842)
T KOG1870|consen 773 EFVVNKEQ--VLYDLYAVGNHYGQ-LSGGHYTAYAKNVGDGKWYLFDDSSVSEVDE 825 (842)
T ss_pred hhhccCcc--ceeeeeeeecccCC-cCCcchhhhhhcCCCCceEEeccccCCCCCh
Confidence 99988764 89999999999999 6999999999998889999999999999764
No 29
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.5e-23 Score=241.66 Aligned_cols=153 Identities=33% Similarity=0.600 Sum_probs=138.4
Q ss_pred CcceEEEeeCC--CCCCHHHHHHhcccceEecCCCceecCCCCceeeEEEEEEEeecCCeeEEEEeeeEEeCCCCceecc
Q 003922 2 EDFYELELNVK--GLKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKKKI 79 (786)
Q Consensus 2 E~F~~LsL~i~--~~~sL~d~L~~f~~~E~L~gdn~y~Ce~C~~~~~a~k~~~i~~lP~vLiihLkRF~~d~~~~~~~Ki 79 (786)
|.|.++++++. ...++..+|..|..+|.|.|+|+|+|++|...++|.|++.+.++|.+|+||||||.|+.......|+
T Consensus 406 e~f~D~~~~v~~de~~si~~~l~~~~~~e~l~g~nky~c~~c~s~qeae~~l~~k~lp~~L~l~Lkrfk~~~~~~~~~kl 485 (587)
T KOG1864|consen 406 EGFLDLSVAVEIDENTSITNLLKSFSSTETLSGENKYSCENCCSLQEAERRLKIKKLPYVLTLHLKRFKYSEQQNRYTKL 485 (587)
T ss_pred ccccccceeccccccccHHHHHHHhcchhhccCCCcccccccCchhhHHHhccccCCcceeeeehhcccccccccccccc
Confidence 68999999998 5899999999999999999999999999999999999999999999999999999999877778999
Q ss_pred cceeecccccccccccCCCCCCCceeEEEEEEEeeccccCCceEEEEEEecCCCcEEEEcCCceeecCCCCCCCCC
Q 003922 80 TSPFCFPGELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGHHPFGEGS 155 (786)
Q Consensus 80 ~~~V~fP~~Ldl~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vr~~~~~~W~~fnD~~Vt~v~~~~~~~~~ 155 (786)
...|.||.+|.+...+.........|+|+|||+|.|.+++.|||+||+|.. .-.|+.|||+.|+.++..++.+..
T Consensus 486 ~~~v~~plel~l~~~~~~~~~~~~~Y~L~avVvH~G~~p~~GHYia~~r~~-~~nWl~fdD~~V~~~s~~~v~~~~ 560 (587)
T KOG1864|consen 486 LYRVVFPLELRLKDTLKDDNNPDRKYDLVAVVVHLGSTPNRGHYVAYVKSL-DFNWLLFDDDNVEPISEEPVSEFT 560 (587)
T ss_pred ccccccccceeeccccccccCccceeeEEEEEEeccCCCCCcceEEEEeeC-CCCceecccccccccCcchhhhcc
Confidence 999999999999877766554357999999999999999999999999973 334999999999999877665443
No 30
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=99.87 E-value=1.5e-21 Score=204.23 Aligned_cols=108 Identities=37% Similarity=0.715 Sum_probs=92.2
Q ss_pred ceecCCCCceeeEEEEEEEeecCCeeEEEEeeeEEeCCCCceecccceeecc-cccccccccCCCCC---CCceeEEEEE
Q 003922 35 QYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKKKITSPFCFP-GELNMQRRLSEPSQ---LDLIYDLSAV 110 (786)
Q Consensus 35 ~y~Ce~C~~~~~a~k~~~i~~lP~vLiihLkRF~~d~~~~~~~Ki~~~V~fP-~~Ldl~~~~~~~~~---~~~~Y~L~aV 110 (786)
.+.|.+|+.. ...|.++|++|+|||+||.|+..++...|+.+.|.|| .+|||.+++..... ....|+|+||
T Consensus 142 ~~~c~~c~~~-----~~~~~~~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~~~~~l~l~~~~~~~~~~~~~~~~Y~L~av 216 (269)
T PF00443_consen 142 SIKCSSCKNS-----QSSISSLPPILIIQLKRFEFDQETGRSKKINNPVEFPLEELDLSPYLEKNNSECQSNVKYRLVAV 216 (269)
T ss_dssp EEEETTTTCE-----EEEEEEBBSEEEEEEE-EEEESTSSEEEE--CEEB--SSEEEGGGGBSSCCCTHTSSSEEEEEEE
T ss_pred cccccccccc-----ccccccccceeeeccccceeccccccccccccccccCchhhhhhhhhccccccccccceeeehhh
Confidence 4889999976 7789999999999999999999888899999999999 69999999877653 2589999999
Q ss_pred EEeeccccCCceEEEEEEecCCCcEEEEcCCceeecCC
Q 003922 111 LIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGH 148 (786)
Q Consensus 111 I~H~G~s~~sGHY~a~vr~~~~~~W~~fnD~~Vt~v~~ 148 (786)
|+|.|+ .++|||+||+|+..++.|++|||+.|++++.
T Consensus 217 i~H~G~-~~~GHY~a~v~~~~~~~W~~~dD~~v~~~~~ 253 (269)
T PF00443_consen 217 IVHYGS-ADSGHYVAYVRDSDDGKWYKFDDSRVTEVSW 253 (269)
T ss_dssp EEEESS-TTSEEEEEEEEETTTTEEEEEETTEEEEESH
T ss_pred hccccc-cccceEEEeeccccCCeEEEeeCCceEECCH
Confidence 999995 7999999999997667899999999999973
No 31
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=4.2e-22 Score=224.83 Aligned_cols=135 Identities=24% Similarity=0.461 Sum_probs=114.7
Q ss_pred CCCCCHHHHHHhcccceEecCCCceecCCCCc------e---------------------eeEEEEEEEeecCCeeEEEE
Q 003922 12 KGLKTLDESLDDYLSVEELHGDNQYFCDSCGT------R---------------------VDATRSIKLRSLPDVLNFQL 64 (786)
Q Consensus 12 ~~~~sL~d~L~~f~~~E~L~gdn~y~Ce~C~~------~---------------------~~a~k~~~i~~lP~vLiihL 64 (786)
.+..|++.||.+|+.-|+|.|+|+|.|++|-+ . ..|.|...|..+||||+|||
T Consensus 675 D~p~Svq~CL~nFT~~E~Ls~~N~~~CEnCtk~~n~~~r~k~~~n~~~sk~s~~es~~~~t~akk~~li~~aPpVltihl 754 (877)
T KOG1873|consen 675 DEPCSVQRCLKNFTKVEILSGDNKWACENCTKNLNLQRREKRGLNEDNSKYSFNESEYRNTYAKKKVLINKAPPVLTIHL 754 (877)
T ss_pred CCCccHHHHHHhhhhhhhcccccchhhhhhhccccccchhhccCCCCcccccccchhhhhhhhheeeecccCCceeeehH
Confidence 34679999999999999999999999999965 1 12467888999999999999
Q ss_pred eeeEEeCCCCceecccceeecccccccccccCCCCC-----CCceeEEEEEEEeeccccCCceEEEEEEec---------
Q 003922 65 KRCVFLPKTTMKKKITSPFCFPGELNMQRRLSEPSQ-----LDLIYDLSAVLIHKGTAVNSGHYIALIKDE--------- 130 (786)
Q Consensus 65 kRF~~d~~~~~~~Ki~~~V~fP~~Ldl~~~~~~~~~-----~~~~Y~L~aVI~H~G~s~~sGHY~a~vr~~--------- 130 (786)
|||..+. .+...|++.++.|++-+||.+|+..... ....|+|+|||.|.|+ +.+|||++|++..
T Consensus 755 Krf~q~~-~~~~~k~~~h~~f~E~~dL~~~~~~rc~~l~~~~s~~Yrl~gvvehsgt-m~~ghyvayv~~~t~~~~~~~~ 832 (877)
T KOG1873|consen 755 KRFFQDI-RGRLSKLNKHVDFKEFEDLLDYMDFRCSHLDEPSSFVYRLAGVVEHSGT-MSYGHYVAYVRGGTFLDLSAPS 832 (877)
T ss_pred hhhhhhh-hchhhcccccchHHHHHHHHHHhhhhccccCCcchhhhhhccceecccc-ccCCcchhhhhccchhhccCcc
Confidence 9999876 3557899999999999999998753211 2579999999999999 5999999999851
Q ss_pred -----------CCCcEEEEcCCceeecCC
Q 003922 131 -----------NTGQWWEFDDEHVSNLGH 148 (786)
Q Consensus 131 -----------~~~~W~~fnD~~Vt~v~~ 148 (786)
..++||...|++|.+++.
T Consensus 833 ~~~~~~sd~~~~~~~Wy~iSDs~VrevS~ 861 (877)
T KOG1873|consen 833 NSKDFESDAGIPSGRWYYISDSIVREVSL 861 (877)
T ss_pred ccccchhccCCCCcceEEecchheecccH
Confidence 347899999999999974
No 32
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=4.6e-19 Score=198.89 Aligned_cols=88 Identities=23% Similarity=0.429 Sum_probs=77.1
Q ss_pred cceEEEeeCCC------CCCHHHHHHhcccceEecCCCceecCCCCceeeEEEEEEEeecCCeeEEEEeeeEEeCCCCce
Q 003922 3 DFYELELNVKG------LKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMK 76 (786)
Q Consensus 3 ~F~~LsL~i~~------~~sL~d~L~~f~~~E~L~gdn~y~Ce~C~~~~~a~k~~~i~~lP~vLiihLkRF~~d~~~~~~ 76 (786)
.-+.|.|+|+. ..++..||+.||.|.+.+ |.|..|+.|..|+|.+.|.++|++|+||.+||.| .....
T Consensus 455 ~~~~i~lpv~~~~~v~~~v~~~~cleaff~pq~~d----f~s~ac~~K~~a~kt~~~ksfP~yLiiqv~rf~~--~dw~p 528 (763)
T KOG0944|consen 455 SEYLIQLPVPMTNEVREKVPISACLEAFFEPQVDD----FWSTACGEKKGATKTTRFKSFPDYLIIQVGRFTL--QDWVP 528 (763)
T ss_pred hheeeEeeccccccccccCCHHHHHHHhcCCcchh----hhhHhhcCccccccccccccCCceEEEEeeEEEe--cCcee
Confidence 34567777764 459999999999994444 9999999999999999999999999999999999 45899
Q ss_pred ecccceeecccccccccccC
Q 003922 77 KKITSPFCFPGELNMQRRLS 96 (786)
Q Consensus 77 ~Ki~~~V~fP~~Ldl~~~~~ 96 (786)
+|+...|+.|+.||++.|..
T Consensus 529 kKld~~iempe~ldls~~rs 548 (763)
T KOG0944|consen 529 KKLDVSIEMPEELDLSSYRS 548 (763)
T ss_pred eeeccceecchhhchhhhhh
Confidence 99999999999999998753
No 33
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.76 E-value=3.2e-19 Score=196.10 Aligned_cols=122 Identities=28% Similarity=0.434 Sum_probs=100.1
Q ss_pred CCcceEEEeeCCC----------CCCHHHHHHhcccceEecCCCceecCCCCceeeEEEEEEEeecCCeeEEEEeeeEEe
Q 003922 1 MEDFYELELNVKG----------LKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFL 70 (786)
Q Consensus 1 ~E~F~~LsL~i~~----------~~sL~d~L~~f~~~E~L~gdn~y~Ce~C~~~~~a~k~~~i~~lP~vLiihLkRF~~d 70 (786)
.|+|++|+|+|.+ ..+|++||+.||..|. |.++|+||.|||| ++
T Consensus 165 ~E~F~~L~l~I~~~~~~~~~~~~~~~L~d~L~~~~~~e~-----------------------~~~~P~vl~~qlq---~~ 218 (343)
T cd02666 165 TERFLSLLVDVGKKGREIVVLLEPKDLYDALDRYFDYDS-----------------------LTKLPQRSQVQAQ---LA 218 (343)
T ss_pred cceeEEEEEecCcccccccccCCCCCHHHHHHHhcChhh-----------------------hccCCHHHHHHHh---hc
Confidence 4899999999984 6899999999998886 8999999999999 33
Q ss_pred CCCCceecccceeecccccccccccCCC----------------------------CCCCceeEEEEEEEeeccccCCce
Q 003922 71 PKTTMKKKITSPFCFPGELNMQRRLSEP----------------------------SQLDLIYDLSAVLIHKGTAVNSGH 122 (786)
Q Consensus 71 ~~~~~~~Ki~~~V~fP~~Ldl~~~~~~~----------------------------~~~~~~Y~L~aVI~H~G~s~~sGH 122 (786)
.......+..++.+||...|..+++... ......|+|+|||+|.|+. ++||
T Consensus 219 ~~~~~~~~~~dry~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Y~L~avv~H~G~~-~~GH 297 (343)
T cd02666 219 QPLQRELISMDRYELPSSIDDIDELIREAIQSESSLVRQAQNELAELKHEIEKQFDDLKSYGYRLHAVFIHRGEA-SSGH 297 (343)
T ss_pred ccccchheeeccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceEEEEEEEeecCC-CCCe
Confidence 3345556677777877766666554220 0127889999999999996 9999
Q ss_pred EEEEEEecCCCcEEEEcCCceeecCCC
Q 003922 123 YIALIKDENTGQWWEFDDEHVSNLGHH 149 (786)
Q Consensus 123 Y~a~vr~~~~~~W~~fnD~~Vt~v~~~ 149 (786)
|++|+|+..++.||+|||+.|++++..
T Consensus 298 Y~~~~~~~~~~~W~~~dD~~V~~v~~~ 324 (343)
T cd02666 298 YWVYIKDFEENVWRKYNDETVTVVPAS 324 (343)
T ss_pred EEEEEEECCCCeEEEEECCeeEEecHH
Confidence 999999977799999999999999754
No 34
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.1e-16 Score=170.95 Aligned_cols=146 Identities=25% Similarity=0.458 Sum_probs=126.4
Q ss_pred CCcceEEEeeC--CCCCCHHHHHHhcccceEecCCCceecCCCCceeeEEEEEEEeecCCeeEEEEeeeEEeCCCCceec
Q 003922 1 MEDFYELELNV--KGLKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKKK 78 (786)
Q Consensus 1 ~E~F~~LsL~i--~~~~sL~d~L~~f~~~E~L~gdn~y~Ce~C~~~~~a~k~~~i~~lP~vLiihLkRF~~d~~~~~~~K 78 (786)
.+||..|+|+| .+..+++++|..+...|.+.+ |.-. -+..+.+.+++.+.+||++|++|||||.|.. ++...|
T Consensus 249 lqPF~tlqldiq~~~i~sv~~ales~~~re~lp~---~st~-s~~eV~~s~q~~leklp~vlilhlkrF~ye~-tgg~~k 323 (420)
T KOG1871|consen 249 LQPFFTLQLDIQSEKIHSVQDALESLVARESLPG---YSTK-SGQEVEASSQTTLEKLPPVLILHLKRFVYEK-TGGARK 323 (420)
T ss_pred cCccceeeeeeeccccCCHHHHhhccChhhcccc---eecC-CCCeechhhhhhHhhcchhhhhhhhHHHHHh-ccchhh
Confidence 47999999999 568899999999999999987 6554 6778999999999999999999999999975 677899
Q ss_pred ccceeecccccccccccCCC------CCCCceeEEEEEEEeeccccCCceEEEEEEecCCCcEEEEcCCceeecCCCCC
Q 003922 79 ITSPFCFPGELNMQRRLSEP------SQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGHHPF 151 (786)
Q Consensus 79 i~~~V~fP~~Ldl~~~~~~~------~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vr~~~~~~W~~fnD~~Vt~v~~~~~ 151 (786)
+.+.+.||-.|.+..-+..+ ......|.|.+|+.|+|+++..|||+.-+.+..-+.|+.+||..|..+..+.+
T Consensus 324 ~~K~i~~~~~l~i~~~~~s~gvk~~~~~~~~~yks~~vvyhtgtsatvghYl~dv~~s~~~gw~rIDD~~i~~v~q~dv 402 (420)
T KOG1871|consen 324 LGKKIEYPWTLKISKNCFSQGLKIRILIATRPYKSLAVVYHTGTSATVGHYLEDVSRSVPSGWQRIDDALILFVAQEDV 402 (420)
T ss_pred hchhhhccceeeechhhhccccchhhhccccccceEEEEEecccccccCceEEeeeecccCceeEeccceeeeccHhhh
Confidence 99999999888777643321 11267899999999999999999999999988788999999999999975533
No 35
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=5.6e-16 Score=168.91 Aligned_cols=89 Identities=18% Similarity=0.409 Sum_probs=75.8
Q ss_pred CcceEEEeeCCCC---CCHHHHHHhcccceEecCCCceecCCCCceeeEEEEEEEeecCCeeEEEEeeeEEeCCCCceec
Q 003922 2 EDFYELELNVKGL---KTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKKK 78 (786)
Q Consensus 2 E~F~~LsL~i~~~---~sL~d~L~~f~~~E~L~gdn~y~Ce~C~~~~~a~k~~~i~~lP~vLiihLkRF~~d~~~~~~~K 78 (786)
|+-..+.+.+.++ .++.++++.||.+++++ |.|++|+.+..|.|...|++||.+||||..||.+ ++...+|
T Consensus 445 e~~~~i~i~le~n~E~~di~~~v~a~f~pdtiE----~~CenCk~K~~a~~k~~~kslPk~LIlq~~R~~l--qny~v~k 518 (749)
T COG5207 445 ESMLMICIFLEGNDEPQDIRKSVEAFFLPDTIE----WSCENCKGKKKASRKPFIKSLPKYLILQVGRYSL--QNYKVEK 518 (749)
T ss_pred cceEEEEeecccCcchhhHHHHHHheECcccee----eehhhhcCcccccccchhhccCceeEEecceeec--cceeehh
Confidence 4555666666653 58999999999999999 9999999999999999999999999999999997 4577889
Q ss_pred ccceeeccc--ccccccccC
Q 003922 79 ITSPFCFPG--ELNMQRRLS 96 (786)
Q Consensus 79 i~~~V~fP~--~Ldl~~~~~ 96 (786)
+..++.... .++++.|++
T Consensus 519 ls~pi~~~~D~m~~~~s~ms 538 (749)
T COG5207 519 LSDPIEMRSDDMIKLGSFMS 538 (749)
T ss_pred ccCceEEccccccchhhHhh
Confidence 988888765 378887764
No 36
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=99.52 E-value=5.7e-14 Score=152.07 Aligned_cols=135 Identities=25% Similarity=0.409 Sum_probs=113.9
Q ss_pred ceEEEeeCCC---CCCHHHHHHhcccceEecCCCceecCCCCceeeEEEEEEEeecCCeeEEEEeeeEEeCCCCceeccc
Q 003922 4 FYELELNVKG---LKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKKKIT 80 (786)
Q Consensus 4 F~~LsL~i~~---~~sL~d~L~~f~~~E~L~gdn~y~Ce~C~~~~~a~k~~~i~~lP~vLiihLkRF~~d~~~~~~~Ki~ 80 (786)
.+.+.|..+. ..++.++|+.++..|.... ..|++|++.+....+..|.+||+||.|.++|+.++ . ....|..
T Consensus 149 ~~~~~l~yp~~~~~~tf~~~Le~sl~~e~~~~---a~C~~C~~~~~~~~~r~i~~LPpVL~In~~~~~~~-~-~w~~~~~ 223 (295)
T PF13423_consen 149 TLVLDLPYPPSNSNVTFSQVLEHSLNREQQTR---AWCEKCNKYQPTEQRRTIRSLPPVLSINLNRYSEE-E-FWPKKNW 223 (295)
T ss_pred eeeeeccCCCCCccchHHHHHHHHHhhccccc---ccccccccccceeeeeeccCCCcEEEEEccCCCcc-c-ccccccC
Confidence 3444444433 5699999999999998876 89999999999999999999999999999999988 3 3478899
Q ss_pred ceeecccccccccccCCCC-------CCCceeEEEEEEEeeccccCCceEEEEEEecC--CCcEEEEcCCce
Q 003922 81 SPFCFPGELNMQRRLSEPS-------QLDLIYDLSAVLIHKGTAVNSGHYIALIKDEN--TGQWWEFDDEHV 143 (786)
Q Consensus 81 ~~V~fP~~Ldl~~~~~~~~-------~~~~~Y~L~aVI~H~G~s~~sGHY~a~vr~~~--~~~W~~fnD~~V 143 (786)
..+.+|..+++..++.... ....+|+|.|+|+|.|.+.++|||+|+||-.. ..+||.|||-.|
T Consensus 224 ~~~~ip~~i~~~~~~~~~~~~~~~~~~~~~~Y~L~~~V~~i~~~~~~~HlVs~vrv~~~~~~~W~lFNDflV 295 (295)
T PF13423_consen 224 LKIWIPPSINLPHFIADDSQSDLEGESGIFKYELRSMVCHIGDSIESGHLVSLVRVGPSDDSQWYLFNDFLV 295 (295)
T ss_pred CceecceeeeccccccccccccccCCCCceEEEEEEEEEEecCCCCCCceEEEEEcCCCCCCcEEEECcEeC
Confidence 9999999999998875432 23789999999999999889999999999752 369999999655
No 37
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=2e-14 Score=157.55 Aligned_cols=144 Identities=26% Similarity=0.326 Sum_probs=106.8
Q ss_pred CcceEEEeeCCCC-CCHHHHHHhcccceEecCCCceecCCCCceeeEEEEEEEeecCCeeEEEEeeeEEeCCCCceeccc
Q 003922 2 EDFYELELNVKGL-KTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKKKIT 80 (786)
Q Consensus 2 E~F~~LsL~i~~~-~sL~d~L~~f~~~E~L~gdn~y~Ce~C~~~~~a~k~~~i~~lP~vLiihLkRF~~d~~~~~~~Ki~ 80 (786)
|.|+.|..-+... ..+...|..=++++.-. .-+.-|..-...|.+.|.+||.+|.|+.-||.|-...+...|+-
T Consensus 255 E~~~~L~c~i~~~~~~~k~Gl~~~~~e~~~K-----~s~~lgr~a~y~k~~~isrlP~ylTvq~vrf~~k~k~~~~akil 329 (473)
T KOG1872|consen 255 ELVDQLKCIINKTVHDMRFGLKSGLSEEIQK-----ISSILGRPAAYQKVMYISRLPEYLTVQEVRFFSKAKIMVVAKIL 329 (473)
T ss_pred ccccccceEEeeeechhhhhhhhhhhhhhhc-----cCcccCCChHHHHHhHhhcCcccceEEEEEEEeccccchHHHHH
Confidence 6677777776542 23444444333332211 11222333344577889999999999999999999999999999
Q ss_pred ceeecccccccccccCCCC----------------------------------------------C---C-CceeEEEEE
Q 003922 81 SPFCFPGELNMQRRLSEPS----------------------------------------------Q---L-DLIYDLSAV 110 (786)
Q Consensus 81 ~~V~fP~~Ldl~~~~~~~~----------------------------------------------~---~-~~~Y~L~aV 110 (786)
..|.||..||....++... + . ...|+|.||
T Consensus 330 ~~V~fP~~ld~~d~ct~el~~k~~~~r~k~r~~edkk~~~~~~~k~~~~~~~~~~~~~e~~~~~~~~~s~~~g~y~l~~v 409 (473)
T KOG1872|consen 330 NAVNFPKDLDQQDLCTPELKKKLLCRRKKHRKVEDKKKEEDVMPKVKGAQERLKEVPLEGMYNKSGGKSRNSGLYDLQLV 409 (473)
T ss_pred HhccChhhhhHHHhhCHHhhcCccchHHHHHHHHhcCCchhhcccccCcCcccccccccchhccccccccccceeeeeEe
Confidence 9999999999987754210 0 1 468999999
Q ss_pred EEeeccccCCceEEEEEEecCCCcEEEEcCCceeecCCCCC
Q 003922 111 LIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGHHPF 151 (786)
Q Consensus 111 I~H~G~s~~sGHY~a~vr~~~~~~W~~fnD~~Vt~v~~~~~ 151 (786)
|.|.|.+..+|||.+++|.. .+.|++|||..|+-+..+.+
T Consensus 410 ithkgrss~sghy~aw~r~s-~~~w~~fdd~~vs~v~~e~i 449 (473)
T KOG1872|consen 410 ITHKGRSSKSGHYVAWNRVS-EDKWGHFDDDMVSFVLGETI 449 (473)
T ss_pred eeccccccCCCcceEEEecc-CCceeeccccccccccccce
Confidence 99999999999999999984 66999999999999976543
No 38
>smart00695 DUSP Domain in ubiquitin-specific proteases.
Probab=99.20 E-value=1.5e-11 Score=108.74 Aligned_cols=72 Identities=36% Similarity=0.778 Sum_probs=59.4
Q ss_pred CCCCeEEEeHHHHHHHhhccC------CCCCCCccccccCC--CCCCCCc--cccccccHHHHHHHHHHcCCCCC-CCch
Q 003922 301 LEEPFYWISSDWLRQWADKIF------PSTLDNTSIQCLHG--KVPESKI--GSMKRISSKAWNKFFFKYNGGPA-LTND 369 (786)
Q Consensus 301 ~~~~~~~Is~~WL~~w~~~~~------P~pIdN~~llC~Hg--~l~p~k~--~~~krIs~~aw~~L~~~ygGgP~-l~~~ 369 (786)
+++..|+||.+|+++|.+... ||||||++|+|.++ .|.++.. ..+..||+.+|++|+++|||||. +...
T Consensus 3 ~g~~~yiIs~~W~~~~~~~~~~~~~~~pGpIdN~~l~~~~~~~~lk~~l~~~~dy~~V~~~vW~~l~~~YGggp~~i~R~ 82 (86)
T smart00695 3 EGDTWYLISTRWYRQWADFVEGKDGKDPGPIDNSGILCSHGGPRLKEHLVEGEDYVLIPEELWNKLVSWYGGGPGPIPRK 82 (86)
T ss_pred CCCEEEEEeHHHHHHHHHHhCCCCCCCCCCCCcHHhcCCCCCcccccccccCCCEEEeCHHHHHHHHHHHCCCCccceEE
Confidence 457789999999999998877 99999999999998 5665543 34677999999999999999995 5544
Q ss_pred hhh
Q 003922 370 DYC 372 (786)
Q Consensus 370 ~~C 372 (786)
.+|
T Consensus 83 ~i~ 85 (86)
T smart00695 83 VVC 85 (86)
T ss_pred eec
Confidence 444
No 39
>PF06337 DUSP: DUSP domain; InterPro: IPR006615 Deubiquitinating enzymes (DUB) form a large family of cysteine protease that can deconjugate ubiquitin or ubiquitin-like proteins (see PDOC00271 from PROSITEDOC) from ubiquitin-conjugated proteins. All DUBs contain a catalytic domain surrounded by one or more subdomains, some of which contribute to target recognition. The ~120-residue DUSP (domain present in ubiquitin-specific proteases) domain is one of these specific subdomains. Single or tandem DUSP domains are located both N- and C-terminal to the ubiquitin carboxyl-terminal hydrolase catalytic core domain (see PDOC00750 from PROSITEDOC) []. The DUSP domain displays a tripod-like AB3 fold with a three-helix bundle and a three-stranded anti-parallel beta-sheet resembling the legs and seat of the tripod. Conserved residues are predominantly involved in hydrophobic packing interactions within the three alpha-helices. The most conserved DUSP residues, forming the PGPI motif, are flanked by two long loops that vary both in length and sequence. The PGPI motif packs against the three-helix bundle and is highly ordered []. The function of the DUSP domain is unknown but it may play a role in protein/protein interaction or substrate recognition. This domain is associated with ubiquitin carboxyl-terminal hydrolase family 2 (IPR001394 from INTERPRO, MEROPS peptidase family C19). They are a family 100 to 200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast; others include: Mammalian ubiquitin carboxyl-terminal hydrolase 4 (USP4), Mammalian ubiquitin carboxyl-terminal hydrolase 11 (USP11), Mammalian ubiquitin carboxyl-terminal hydrolase 15 (USP15), Mammalian ubiquitin carboxyl-terminal hydrolase 20 (USP20), Mammalian ubiquitin carboxyl-terminal hydrolase 32 (USP32), Vertebrate ubiquitin carboxyl-terminal hydrolase 33 (USP33), Vertebrate ubiquitin carboxyl-terminal hydrolase 48 (USP48). ; GO: 0004221 ubiquitin thiolesterase activity; PDB: 4A3O_B 3PPA_A 3LMN_A 1W6V_A 3T9L_A 4A3P_A 3PV1_A 3JYU_B.
Probab=99.02 E-value=7.2e-10 Score=100.49 Aligned_cols=91 Identities=22% Similarity=0.418 Sum_probs=53.2
Q ss_pred CCeeEEEchhhHHHHHHhcCCCCCCCC-C----CCCcccccccccceeccccccccCCCccccccCcccccCCCCCCcee
Q 003922 538 DCKYYLLPSTWLTKWRNYISPSGKNAS-S----IEPEILDGVIDSLKCEKHLRLLERPPDLVCKRGSIYQKGSATDGLTI 612 (786)
Q Consensus 538 ~~~~y~vp~~wl~~Wr~fv~~~~~~~~-~----~~P~~id~~~~~l~C~~Hg~Ll~~p~~~~~~~g~~~q~~~~~~~~~~ 612 (786)
|..+|+||+.|+++|++||........ . ..|++||| +.|++ .++.....+. ...+.+........++.+
T Consensus 1 G~~~ylIs~~W~~~W~~~v~~~~~~~~~~~~~~~~pGpIdN--~~L~~-~~~~~~~~~~---~~~~~Lk~~l~~~~Dy~~ 74 (99)
T PF06337_consen 1 GDKWYLISSKWWRQWKSYVSYDNNDNESDPDSSPRPGPIDN--SDLLD-EDNSQLQFPP---PENYRLKPNLQEGVDYEL 74 (99)
T ss_dssp T-EEEEEEHHHHHHHHHHHTTTTTSTTTTT-GGG---SB-G--GGGEC-CTTT------------TEE-SS--CTTTEEE
T ss_pred CCEEEEECHHHHHHHHHHhCCCCcccccccccCCCCCCEeC--HHHhC-CCCcccccch---hhhhhccccccCCCCEEE
Confidence 457899999999999999986554411 0 12999999 88888 5554433222 122334433455667999
Q ss_pred eCHHHHHHHHHHhCCCcccceE
Q 003922 613 VTENDWKWFCEEWGGIKEKGLS 634 (786)
Q Consensus 613 Is~~eW~~l~~~yg~~~~~~i~ 634 (786)
|+++.|++|.+.|||||+|...
T Consensus 75 v~~~~W~~l~~~Ygggp~I~R~ 96 (99)
T PF06337_consen 75 VPEEVWDYLHSWYGGGPEIKRQ 96 (99)
T ss_dssp EEHHHHHHHHHHH-T----EEE
T ss_pred ECHHHHHHHHHHcCCCCcEEEE
Confidence 9999999999999999997554
No 40
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]
Probab=99.00 E-value=7.3e-11 Score=126.32 Aligned_cols=130 Identities=25% Similarity=0.334 Sum_probs=99.9
Q ss_pred cceEEEeeCCCC--------------CCHHHHHHhcccceEecCCCceecCCCCceeeEEEEEEEeecCCeeEEEEeeeE
Q 003922 3 DFYELELNVKGL--------------KTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCV 68 (786)
Q Consensus 3 ~F~~LsL~i~~~--------------~sL~d~L~~f~~~E~L~gdn~y~Ce~C~~~~~a~k~~~i~~lP~vLiihLkRF~ 68 (786)
+|+.|+|+++.. ..|.+.|..|-..-.-+ |. ....+ +|..+.++|++||||++||.
T Consensus 277 ~Fl~LtLDLP~~plfkD~~e~niiPQV~l~~lL~Kf~g~t~~e----~~-----~~~~~-~rf~l~k~P~ylifh~~rF~ 346 (442)
T KOG2026|consen 277 PFLYLTLDLPPPPLFKDVMEKNIIPQVALFDLLKKFDGETVTE----VV-----TPKLA-MRFRLTKLPRYLIFHMKRFK 346 (442)
T ss_pred eeEEEEecCCCCCcccchhhhcccccchHHHHHHHhcCceeee----ec-----chhhh-hheeeecCCceEEEEeeecc
Confidence 799999998653 35667776665332222 11 11233 88999999999999999998
Q ss_pred EeCCCCceecccceeecc-cccccccccCC---CCCCCceeEEEEEEEeeccccCCceEEEEEEecCCCcEEEEcCCcee
Q 003922 69 FLPKTTMKKKITSPFCFP-GELNMQRRLSE---PSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVS 144 (786)
Q Consensus 69 ~d~~~~~~~Ki~~~V~fP-~~Ldl~~~~~~---~~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vr~~~~~~W~~fnD~~Vt 144 (786)
= ++....|+.+-++|| ..+|+.+.+.. .......|.|.|.++|- ..-|||..++++..++.||+++|-+|+
T Consensus 347 k--Nn~f~ekNpTl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~i~~---~e~~~~riqi~~~~s~kW~eiqdl~v~ 421 (442)
T KOG2026|consen 347 K--NNFFKEKNPTLVEFPYSEVDILHVLDRLKAVNHKVTQYSLVANAIHE---DEDGNFRIQIYDNSSEKWYEIQDLHVT 421 (442)
T ss_pred c--cCcccccCCceeeccCCccchhhhhhhcccccCccccccchhhhhcC---cccCceEEEEEeCCCcceEEecccchh
Confidence 4 458899999999999 45777665432 22225899999999998 367999999999999999999999999
Q ss_pred ecC
Q 003922 145 NLG 147 (786)
Q Consensus 145 ~v~ 147 (786)
+..
T Consensus 422 e~~ 424 (442)
T KOG2026|consen 422 ERL 424 (442)
T ss_pred hhh
Confidence 974
No 41
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=98.94 E-value=6.3e-10 Score=98.23 Aligned_cols=48 Identities=29% Similarity=0.352 Sum_probs=45.5
Q ss_pred CccccccccccCCeEEEEecccccHHHHHHHHHHHhCcccccccCceeeee
Q 003922 733 DRRASKRSRKTRSFVNLKVSASTSIYQLKMMIWESLGLCSTKVFGKHKMLY 783 (786)
Q Consensus 733 ~~R~s~r~r~~~~~~~l~vs~~~t~~~lK~~i~~~~~v~~~~~~~~~~~~~ 783 (786)
.+|||+|.|+.++++.|+|++++||.+||.+||+.|||+| |+||+|++
T Consensus 3 ~irrs~r~r~~~~~~~L~V~~~~TVg~LK~lImQ~f~V~P---~dQkL~~d 50 (107)
T cd01795 3 VIRRSMRHRKVRGEKALLVSANQTLKELKIQIMHAFSVAP---FDQNLSID 50 (107)
T ss_pred ccchhhhhccCCCCceEEeCccccHHHHHHHHHHHhcCCc---ccceeeec
Confidence 4799999999999999999999999999999999999999 59999975
No 42
>smart00695 DUSP Domain in ubiquitin-specific proteases.
Probab=98.93 E-value=3.1e-09 Score=93.98 Aligned_cols=80 Identities=18% Similarity=0.425 Sum_probs=61.4
Q ss_pred CCCeeEEEchhhHHHHHHhcCCCCCCCCCCCCcccccccccceeccccccccCCCccccccCcccccCCCCCCceeeCHH
Q 003922 537 LDCKYYLLPSTWLTKWRNYISPSGKNASSIEPEILDGVIDSLKCEKHLRLLERPPDLVCKRGSIYQKGSATDGLTIVTEN 616 (786)
Q Consensus 537 ~~~~~y~vp~~wl~~Wr~fv~~~~~~~~~~~P~~id~~~~~l~C~~Hg~Ll~~p~~~~~~~g~~~q~~~~~~~~~~Is~~ 616 (786)
+|..+|+||+.|+++|..|+. +.. .+.|+|||| ..|+| .|++.-..+.. .....+.+|+++
T Consensus 3 ~g~~~yiIs~~W~~~~~~~~~--~~~--~~~pGpIdN--~~l~~-~~~~~~lk~~l------------~~~~dy~~V~~~ 63 (86)
T smart00695 3 EGDTWYLISTRWYRQWADFVE--GKD--GKDPGPIDN--SGILC-SHGGPRLKEHL------------VEGEDYVLIPEE 63 (86)
T ss_pred CCCEEEEEeHHHHHHHHHHhC--CCC--CCCCCCCCc--HHhcC-CCCCccccccc------------ccCCCEEEeCHH
Confidence 577899999999999999998 333 469999999 99999 67632112221 234579999999
Q ss_pred HHHHHHHHhCCCcccceEE
Q 003922 617 DWKWFCEEWGGIKEKGLSV 635 (786)
Q Consensus 617 eW~~l~~~yg~~~~~~i~~ 635 (786)
.|++|...|||+|+.-+|.
T Consensus 64 vW~~l~~~YGggp~~i~R~ 82 (86)
T smart00695 64 LWNKLVSWYGGGPGPIPRK 82 (86)
T ss_pred HHHHHHHHHCCCCccceEE
Confidence 9999999999999722333
No 43
>PF06337 DUSP: DUSP domain; InterPro: IPR006615 Deubiquitinating enzymes (DUB) form a large family of cysteine protease that can deconjugate ubiquitin or ubiquitin-like proteins (see PDOC00271 from PROSITEDOC) from ubiquitin-conjugated proteins. All DUBs contain a catalytic domain surrounded by one or more subdomains, some of which contribute to target recognition. The ~120-residue DUSP (domain present in ubiquitin-specific proteases) domain is one of these specific subdomains. Single or tandem DUSP domains are located both N- and C-terminal to the ubiquitin carboxyl-terminal hydrolase catalytic core domain (see PDOC00750 from PROSITEDOC) []. The DUSP domain displays a tripod-like AB3 fold with a three-helix bundle and a three-stranded anti-parallel beta-sheet resembling the legs and seat of the tripod. Conserved residues are predominantly involved in hydrophobic packing interactions within the three alpha-helices. The most conserved DUSP residues, forming the PGPI motif, are flanked by two long loops that vary both in length and sequence. The PGPI motif packs against the three-helix bundle and is highly ordered []. The function of the DUSP domain is unknown but it may play a role in protein/protein interaction or substrate recognition. This domain is associated with ubiquitin carboxyl-terminal hydrolase family 2 (IPR001394 from INTERPRO, MEROPS peptidase family C19). They are a family 100 to 200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast; others include: Mammalian ubiquitin carboxyl-terminal hydrolase 4 (USP4), Mammalian ubiquitin carboxyl-terminal hydrolase 11 (USP11), Mammalian ubiquitin carboxyl-terminal hydrolase 15 (USP15), Mammalian ubiquitin carboxyl-terminal hydrolase 20 (USP20), Mammalian ubiquitin carboxyl-terminal hydrolase 32 (USP32), Vertebrate ubiquitin carboxyl-terminal hydrolase 33 (USP33), Vertebrate ubiquitin carboxyl-terminal hydrolase 48 (USP48). ; GO: 0004221 ubiquitin thiolesterase activity; PDB: 4A3O_B 3PPA_A 3LMN_A 1W6V_A 3T9L_A 4A3P_A 3PV1_A 3JYU_B.
Probab=98.64 E-value=3.5e-08 Score=89.38 Aligned_cols=67 Identities=25% Similarity=0.458 Sum_probs=44.8
Q ss_pred eEEEehHHHHHHHHhccC---C---------CCCCCCCCCCceeecCCC-----------CcCCcccCCCceeeecHHHH
Q 003922 412 TYYVSKSWLQQWTRRKNL---D---------APSEADGGPTTSIRCPHG-----------QLMPEKAGGAKRLLVPEILW 468 (786)
Q Consensus 412 ~y~ISk~WLr~W~k~k~~---~---------~P~piDn~~n~dilC~HG-----------~L~~~~~~~~~~~~V~~~~W 468 (786)
-|.||+.|+++|+.+... . .||||||+. |++.++ .|.+....+.++.+||+++|
T Consensus 4 ~ylIs~~W~~~W~~~v~~~~~~~~~~~~~~~~pGpIdN~~---L~~~~~~~~~~~~~~~~~Lk~~l~~~~Dy~~v~~~~W 80 (99)
T PF06337_consen 4 WYLISSKWWRQWKSYVSYDNNDNESDPDSSPRPGPIDNSD---LLDEDNSQLQFPPPENYRLKPNLQEGVDYELVPEEVW 80 (99)
T ss_dssp EEEEEHHHHHHHHHHHTTTTTSTTTTT-GGG---SB-GGG---GECCTTT---------TEE-SS--CTTTEEEEEHHHH
T ss_pred EEEECHHHHHHHHHHhCCCCcccccccccCCCCCCEeCHH---HhCCCCcccccchhhhhhccccccCCCCEEEECHHHH
Confidence 499999999999766331 1 289998755 888876 35554445789999999999
Q ss_pred HHHHHhhcccCCCC
Q 003922 469 LFIYEDAMKVKPDD 482 (786)
Q Consensus 469 ~~L~~~f~~~gP~~ 482 (786)
++|...| |+||++
T Consensus 81 ~~l~~~Y-gggp~I 93 (99)
T PF06337_consen 81 DYLHSWY-GGGPEI 93 (99)
T ss_dssp HHHHHHH--T----
T ss_pred HHHHHHc-CCCCcE
Confidence 9999999 999987
No 44
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.58 E-value=0.00011 Score=86.74 Aligned_cols=114 Identities=22% Similarity=0.358 Sum_probs=88.5
Q ss_pred eecCCCCceeeEEEEEEEeecCCeeEEEEeeeEEeCCCCce--ecccceeecccccccccccCC----------------
Q 003922 36 YFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMK--KKITSPFCFPGELNMQRRLSE---------------- 97 (786)
Q Consensus 36 y~Ce~C~~~~~a~k~~~i~~lP~vLiihLkRF~~d~~~~~~--~Ki~~~V~fP~~Ldl~~~~~~---------------- 97 (786)
-.|+.|.+......+..+..||.+|.|...-+....-+... .|.-..|-+|..+-|..--..
T Consensus 702 ~~C~~C~k~ep~~q~~~vr~LPd~L~in~~~~~~~~~~~~a~q~~~~~~vWLP~~~~~~~~k~~~~~v~~~s~~~~~~~~ 781 (1118)
T KOG1275|consen 702 AWCETCTKPEPTSQKKNVRSLPDCLSINTCLNVHELVDFWARQNKLLEDVWLPEWFHMIISKNKAQLVSTISDLDVSPLP 781 (1118)
T ss_pred cccccccCCCCcccccccccCcceeeeeeeccchhhhhhHHHhhccccccccchheeEEEecccceeeeeeccccCCCCc
Confidence 57999999999999999999999999998887754433332 344667888887776643110
Q ss_pred --CCCCCceeEEEEEEEeeccccCCceEEEEEEe--------cCCCcEEEEcCCceeecCCC
Q 003922 98 --PSQLDLIYDLSAVLIHKGTAVNSGHYIALIKD--------ENTGQWWEFDDEHVSNLGHH 149 (786)
Q Consensus 98 --~~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vr~--------~~~~~W~~fnD~~Vt~v~~~ 149 (786)
+...-.+|+|.|+|+|.|.+-+.+|.+++|+- +.+.+||.|||--|++++.+
T Consensus 782 ~~d~~~~~vYeL~a~V~~I~d~~~e~~lVs~Ikv~~~~~~~~~~dsqWylFNDfLV~~ite~ 843 (1118)
T KOG1275|consen 782 DYDEPSAVVYELDAMVHAIGDNENEVNLVSPIKVLRPYHVIKPDDSQWYLFNDFLVSEITEE 843 (1118)
T ss_pred cccCCceEEEEeeeEEEEeccCCCccceEEEEEccCcccccCcCcceeEEEcceeeeeCChH
Confidence 01114899999999999998789999999984 23369999999999999854
No 45
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=95.94 E-value=0.0065 Score=63.41 Aligned_cols=39 Identities=28% Similarity=0.637 Sum_probs=32.6
Q ss_pred CceeEEEEEEEeeccccCCceEEEEEEecCCCcEEEEcCCcee
Q 003922 102 DLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVS 144 (786)
Q Consensus 102 ~~~Y~L~aVI~H~G~s~~sGHY~a~vr~~~~~~W~~fnD~~Vt 144 (786)
...|++.+||-..- +--|+++++++ .+|.|.++||-+=-
T Consensus 216 g~~Y~Vt~VIQY~~---~~~HFvtWi~~-~dGsWLecDDLkgp 254 (275)
T PF15499_consen 216 GCLYQVTSVIQYQA---NLNHFVTWIRD-SDGSWLECDDLKGP 254 (275)
T ss_pred CeeEEEEEEEEEec---cCceeEEEEEc-CCCCeEeeccCCCc
Confidence 57899999998764 45799999999 57889999997643
No 46
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=88.55 E-value=0.55 Score=40.38 Aligned_cols=35 Identities=17% Similarity=0.229 Sum_probs=30.9
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccccccCceeeee
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCSTKVFGKHKMLY 783 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~~~~~~~~~~~ 783 (786)
....+.|..++|+.+||-+|.+..||+| ++.+.+|
T Consensus 10 ~~~~v~v~~~~Tv~~lK~~i~~~tgvp~----~~QKLi~ 44 (74)
T cd01813 10 QEYSVTTLSEDTVLDLKQFIKTLTGVLP----ERQKLLG 44 (74)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCCH----HHEEEEe
Confidence 4567889999999999999999999999 6777777
No 47
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=87.42 E-value=0.74 Score=39.08 Aligned_cols=29 Identities=14% Similarity=0.210 Sum_probs=26.4
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
+.+.+.|+.++||.+||.+|.+..||++.
T Consensus 10 ~~~~l~v~~~~TV~~lK~~I~~~~gip~~ 38 (71)
T cd01796 10 TTFSLDVDPDLELENFKALCEAESGIPAS 38 (71)
T ss_pred CEEEEEECCcCCHHHHHHHHHHHhCCCHH
Confidence 45789999999999999999999999884
No 48
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=87.18 E-value=1 Score=37.48 Aligned_cols=29 Identities=24% Similarity=0.300 Sum_probs=26.9
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
..+.+.|+.++||.+||.+|.+.+|+++.
T Consensus 6 ~~~~~~v~~~~tV~~lK~~i~~~~~~~~~ 34 (69)
T PF00240_consen 6 KTFTLEVDPDDTVADLKQKIAEETGIPPE 34 (69)
T ss_dssp EEEEEEEETTSBHHHHHHHHHHHHTSTGG
T ss_pred cEEEEEECCCCCHHHhhhhcccccccccc
Confidence 46789999999999999999999999995
No 49
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=86.88 E-value=0.76 Score=39.67 Aligned_cols=29 Identities=21% Similarity=0.261 Sum_probs=27.0
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
+.+.+.|+.++||.+||.+|.+.+||+|.
T Consensus 13 ~t~~l~v~~~~TV~~lK~kI~~~~gip~~ 41 (75)
T cd01799 13 VTIWLTVRPDMTVAQLKDKVFLDYGFPPA 41 (75)
T ss_pred CeEEEEECCCCcHHHHHHHHHHHHCcCHH
Confidence 56779999999999999999999999995
No 50
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=86.31 E-value=0.99 Score=36.55 Aligned_cols=29 Identities=28% Similarity=0.312 Sum_probs=26.2
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
+...+.|+.++||.+||.+|.+.+|+++.
T Consensus 10 ~~~~~~v~~~~tv~~lk~~i~~~~~~~~~ 38 (64)
T smart00213 10 GTITLEVKPSDTVSELKEKIAELTGIPVE 38 (64)
T ss_pred ceEEEEECCCCcHHHHHHHHHHHHCCCHH
Confidence 35678999999999999999999999884
No 51
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=83.70 E-value=1.4 Score=37.34 Aligned_cols=29 Identities=28% Similarity=0.258 Sum_probs=26.7
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
..+.+.|+.++||.+||.+|.+..||++.
T Consensus 9 ~~~~l~v~~~~TV~~lK~~I~~~~gi~~~ 37 (70)
T cd01794 9 KDVKLSVSSKDTVGQLKKQLQAAEGVDPC 37 (70)
T ss_pred CEEEEEECCcChHHHHHHHHHHHhCCCHH
Confidence 56778999999999999999999999885
No 52
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=81.75 E-value=2.3 Score=36.47 Aligned_cols=33 Identities=24% Similarity=0.233 Sum_probs=28.0
Q ss_pred ccccCCeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 740 SRKTRSFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 740 ~r~~~~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
.|+. ..+.+.|+.++||.+||.+|-+.+|+++.
T Consensus 8 t~~G-k~~~~~v~~~~TV~~LK~~I~~~~~~~~~ 40 (73)
T cd01791 8 DRLG-KKVRVKCNPDDTIGDLKKLIAAQTGTRPE 40 (73)
T ss_pred CCCC-CEEEEEeCCCCcHHHHHHHHHHHhCCChH
Confidence 3444 56778999999999999999999999884
No 53
>PTZ00044 ubiquitin; Provisional
Probab=81.56 E-value=2 Score=36.60 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=26.6
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
+...+.|+.++||.+||.+|-+..|+++.
T Consensus 11 ~~~~l~v~~~~tv~~lK~~i~~~~gi~~~ 39 (76)
T PTZ00044 11 KKQSFNFEPDNTVQQVKMALQEKEGIDVK 39 (76)
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCCCHH
Confidence 46778999999999999999999999985
No 54
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=81.34 E-value=1.9 Score=37.10 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=29.0
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccccccCceee
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCSTKVFGKHKM 781 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~~~~~~~~~ 781 (786)
..+.+.|..++||.+||.+|.+..||++. .|.+|
T Consensus 8 ~~~~l~v~~~~TV~~lK~~i~~~~gip~~---~q~L~ 41 (76)
T cd01800 8 QMLNFTLQLSDPVSVLKVKIHEETGMPAG---KQKLQ 41 (76)
T ss_pred eEEEEEECCCCcHHHHHHHHHHHHCCCHH---HEEEE
Confidence 45678999999999999999999999995 45554
No 55
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=80.73 E-value=2.8 Score=36.99 Aligned_cols=35 Identities=17% Similarity=0.151 Sum_probs=28.7
Q ss_pred eEEEEecccccHHHHHHHHHHHhCcccccccCceeeee
Q 003922 746 FVNLKVSASTSIYQLKMMIWESLGLCSTKVFGKHKMLY 783 (786)
Q Consensus 746 ~~~l~vs~~~t~~~lK~~i~~~~~v~~~~~~~~~~~~~ 783 (786)
....+++.++||.+||.+|...+||++. +|-+.+|
T Consensus 15 ~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~---~m~L~l~ 49 (87)
T PF14560_consen 15 SVEKRFPKSITVSELKQKLEKLTGIPPS---DMRLQLK 49 (87)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHHTS-TT---TEEEEEE
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCcc---cEEEEEE
Confidence 5577899999999999999999999997 5555444
No 56
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=80.59 E-value=2.4 Score=36.17 Aligned_cols=29 Identities=14% Similarity=0.167 Sum_probs=26.3
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
+.+.+.|..++||.+||.+|-+..||++.
T Consensus 9 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~ 37 (74)
T cd01793 9 NTHTLEVTGQETVSDIKAHVAGLEGIDVE 37 (74)
T ss_pred CEEEEEECCcCcHHHHHHHHHhhhCCCHH
Confidence 45678999999999999999999999884
No 57
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=80.44 E-value=2.4 Score=37.36 Aligned_cols=34 Identities=21% Similarity=0.178 Sum_probs=28.7
Q ss_pred EEEEecccccHHHHHHHHHHHhCcccccccCceeeee
Q 003922 747 VNLKVSASTSIYQLKMMIWESLGLCSTKVFGKHKMLY 783 (786)
Q Consensus 747 ~~l~vs~~~t~~~lK~~i~~~~~v~~~~~~~~~~~~~ 783 (786)
...+++.++||-+||.+++..+|++|. .|++.+|
T Consensus 15 ~ekr~~~~~Tv~~lK~kl~~~~G~~~~---~mrL~l~ 48 (84)
T cd01789 15 FEKKYSRGLTIAELKKKLELVVGTPAS---SMRLQLF 48 (84)
T ss_pred eeEecCCCCcHHHHHHHHHHHHCCCcc---ceEEEEE
Confidence 355799999999999999999999997 6666544
No 58
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=79.68 E-value=2.7 Score=35.51 Aligned_cols=29 Identities=10% Similarity=0.224 Sum_probs=26.2
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
..+.+.|+.++||.+||-+|.+..|+++.
T Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~g~~~~ 39 (76)
T cd01806 11 KEIEIDIEPTDKVERIKERVEEKEGIPPQ 39 (76)
T ss_pred CEEEEEECCCCCHHHHHHHHhHhhCCChh
Confidence 44678899999999999999999999995
No 59
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=78.89 E-value=2.4 Score=35.37 Aligned_cols=29 Identities=21% Similarity=0.236 Sum_probs=26.0
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
....+.|+.++||.+||-+|.+..||++.
T Consensus 10 ~~~~i~v~~~~tv~~lK~~i~~~~gi~~~ 38 (71)
T cd01812 10 ESHDLSISSQATFGDLKKMLAPVTGVEPR 38 (71)
T ss_pred EEEEEEECCCCcHHHHHHHHHHhhCCChH
Confidence 44568899999999999999999999995
No 60
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=78.71 E-value=2.6 Score=35.61 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=26.2
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
..+.+.|+.++||.+||.+|.+..|+++.
T Consensus 11 ~~~~~~v~~~~tV~~lK~~i~~~~g~~~~ 39 (76)
T cd01803 11 KTITLEVEPSDTIENVKAKIQDKEGIPPD 39 (76)
T ss_pred CEEEEEECCcCcHHHHHHHHHHHhCCCHH
Confidence 45678999999999999999999999885
No 61
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=78.60 E-value=3.1 Score=34.05 Aligned_cols=29 Identities=24% Similarity=0.266 Sum_probs=26.1
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
....+.|..++|+.+||-+|.+.+|+++.
T Consensus 8 ~~~~~~~~~~~ti~~lK~~i~~~~~~~~~ 36 (69)
T cd01769 8 KTFELEVSPDDTVAELKAKIAAKEGVPPE 36 (69)
T ss_pred CEEEEEECCCChHHHHHHHHHHHHCcChH
Confidence 56678899999999999999999999885
No 62
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=78.46 E-value=2.9 Score=35.16 Aligned_cols=29 Identities=24% Similarity=0.272 Sum_probs=26.3
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
..+.+.|..++||.+||-+|.+..|+++.
T Consensus 9 ~~~~~~v~~~~tV~~lK~~i~~~~gi~~~ 37 (70)
T cd01798 9 HTFPVEVDPDTDIKQLKEVVAKRQGVPPD 37 (70)
T ss_pred CEEEEEECCCChHHHHHHHHHHHHCCCHH
Confidence 56778999999999999999999999884
No 63
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=77.51 E-value=2.9 Score=35.59 Aligned_cols=29 Identities=28% Similarity=0.304 Sum_probs=26.5
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
+.+.+.|+.++||.+||-+|.+..||++.
T Consensus 11 ~~~~l~v~~~~tV~~lK~~i~~~~gi~~~ 39 (74)
T cd01807 11 RECSLQVSEKESVSTLKKLVSEHLNVPEE 39 (74)
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCCCHH
Confidence 45678999999999999999999999985
No 64
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=76.46 E-value=3.5 Score=34.40 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=26.3
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
+.+.+.|+.+.||.+||.+|.+..|+++.
T Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~ 39 (72)
T cd01809 11 QTHTFTVEEEITVLDLKEKIAEEVGIPVE 39 (72)
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCcCHH
Confidence 45678999999999999999999999885
No 65
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=74.35 E-value=3.5 Score=36.10 Aligned_cols=35 Identities=29% Similarity=0.384 Sum_probs=25.0
Q ss_pred cccccCCeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 739 RSRKTRSFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 739 r~r~~~~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
|.|-.-|-..+.|+.+.|+.+||-.|.+.|++++.
T Consensus 8 RvrS~dG~~Rie~~~~~t~~~L~~kI~~~l~~~~~ 42 (80)
T PF11543_consen 8 RVRSKDGMKRIEVSPSSTLSDLKEKISEQLSIPDS 42 (80)
T ss_dssp EEE-SSEEEEEEE-TTSBHHHHHHHHHHHS---TT
T ss_pred EEECCCCCEEEEcCCcccHHHHHHHHHHHcCCCCc
Confidence 44444477788999999999999999999999964
No 66
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=74.26 E-value=2.8 Score=52.28 Aligned_cols=118 Identities=15% Similarity=0.105 Sum_probs=71.5
Q ss_pred CCHHHHHHhcccceEecCCCceecCCCCceeeEEEEEEEeecCCeeEEEEeeeEEeCCCCceecccceeeccc-cccccc
Q 003922 15 KTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKKKITSPFCFPG-ELNMQR 93 (786)
Q Consensus 15 ~sL~d~L~~f~~~E~L~gdn~y~Ce~C~~~~~a~k~~~i~~lP~vLiihLkRF~~d~~~~~~~Ki~~~V~fP~-~Ldl~~ 93 (786)
..+.+++..|+..+.+..++++.|+.|....... ...... .++|+..|+.... ....+.+.++.++. .+.+-.
T Consensus 482 ~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~--~~~i~~~~~~~~~--~~~~~~~~~~~~~~~g~p~~~ 555 (842)
T KOG1870|consen 482 EILFDCFNKIFAADELKLDSIYSDEELFDYELGV--LKVQGS--IYAIIVVRFRSRL--PRSKGIRSHVSSKLFGLPLLV 555 (842)
T ss_pred eeccchhhhhhccCccccccccCCcceEEeeccc--cccccc--ceEEEEEeecccc--ccccCcccCCCccccCCccee
Confidence 3567888888888887777888888765432211 111111 4667777766322 22334444455443 233333
Q ss_pred ccCCCCCCCceeEEEEEEEeeccccCCceEEEEEEecCCCcEEEEcCCceeecC
Q 003922 94 RLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLG 147 (786)
Q Consensus 94 ~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vr~~~~~~W~~fnD~~Vt~v~ 147 (786)
++.... ....++|..+++|.++. ..||+ ..+.|+..++..+....
T Consensus 556 ~~~~~~-~~t~~~l~~~~~~~~s~-~~~~~-------~~~v~~~~~~~~~~~~~ 600 (842)
T KOG1870|consen 556 SVLSGA-QSTEEDLLSVICHRTSR-YSREP-------PLNVGYGVDDQSLKEVS 600 (842)
T ss_pred eccCCC-cccccchhhHHhhcccc-cCCcC-------ccccccCCCcccccccc
Confidence 333321 15789999999999995 77777 35677777777776653
No 67
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=72.68 E-value=4.8 Score=36.95 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=26.3
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
..+.|.|+.++||.+||.+|.+..|+++.
T Consensus 38 ~~~~leV~~~~TV~~lK~kI~~~~gip~~ 66 (103)
T cd01802 38 TCFELRVSPFETVISVKAKIQRLEGIPVA 66 (103)
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHhCCChH
Confidence 45778999999999999999999999884
No 68
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=71.67 E-value=5.5 Score=33.87 Aligned_cols=29 Identities=10% Similarity=0.047 Sum_probs=26.1
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
....+.|+.++||.+||.+|-+..|+++.
T Consensus 9 ~~~~l~v~~~~tV~~lK~~I~~~~gi~~~ 37 (74)
T cd01810 9 RSSIYEVQLTQTVATLKQQVSQRERVQAD 37 (74)
T ss_pred CEEEEEECCcChHHHHHHHHHHHhCCCHH
Confidence 45679999999999999999999999884
No 69
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=70.80 E-value=6.4 Score=33.48 Aligned_cols=29 Identities=21% Similarity=0.203 Sum_probs=25.7
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCc--ccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGL--CST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v--~~~ 773 (786)
....+.|+.++||.+||-+|.+..|| ++.
T Consensus 11 ~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~ 41 (77)
T cd01805 11 QTFPIEVDPDDTVAELKEKIEEEKGCDYPPE 41 (77)
T ss_pred CEEEEEECCCCcHHHHHHHHHHhhCCCCChh
Confidence 45678999999999999999999999 764
No 70
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=68.44 E-value=6.5 Score=34.30 Aligned_cols=27 Identities=22% Similarity=0.447 Sum_probs=23.9
Q ss_pred EEEEecccccHHHHHHHHHHHhCcccc
Q 003922 747 VNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 747 ~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
+.|.||.++||.+||.++|+.-.-.|+
T Consensus 2 i~l~~~~~~Tl~~iK~~lw~~A~~~PL 28 (78)
T PF02192_consen 2 IPLRVSRDATLSEIKEELWEEAKKYPL 28 (78)
T ss_dssp EEEEEETT-BHHHHHHHHHHHGGGSTT
T ss_pred eEEEccCcCcHHHHHHHHHHHHHhCCh
Confidence 678999999999999999999888886
No 71
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=63.95 E-value=4.9 Score=35.03 Aligned_cols=27 Identities=15% Similarity=0.235 Sum_probs=25.0
Q ss_pred EEEEecccccHHHHHHHHHHHhCcccc
Q 003922 747 VNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 747 ~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
+.|.||.+.||.++|.++|++-.-.|+
T Consensus 2 i~l~v~~~aTl~~IK~~lw~~A~~~Pl 28 (78)
T smart00143 2 VTLRVLREATLSTIKHELFKQARKMPL 28 (78)
T ss_pred eeEEccccccHHHHHHHHHHHHHhCCH
Confidence 578999999999999999999998886
No 72
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=63.77 E-value=11 Score=32.59 Aligned_cols=29 Identities=21% Similarity=0.209 Sum_probs=25.7
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
....+.|+.+.||.+||-+|-+.+|+++.
T Consensus 12 ~~~~l~v~~~~TV~~LK~~I~~~~~~~~~ 40 (78)
T cd01804 12 TRFDLSVPPDETVEGLKKRISQRLKVPKE 40 (78)
T ss_pred CEEEEEECCcCHHHHHHHHHHHHhCCChH
Confidence 34678999999999999999999999884
No 73
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=60.69 E-value=9.2 Score=33.14 Aligned_cols=32 Identities=19% Similarity=0.308 Sum_probs=26.5
Q ss_pred EEE-ecccccHHHHHHHHHHHhCcccccccCceeeee
Q 003922 748 NLK-VSASTSIYQLKMMIWESLGLCSTKVFGKHKMLY 783 (786)
Q Consensus 748 ~l~-vs~~~t~~~lK~~i~~~~~v~~~~~~~~~~~~~ 783 (786)
.+. |..++||.+||-+|.+..||++ ++.++.|
T Consensus 15 ~l~~v~~~~TV~~lK~~i~~~~gi~~----~~QrLi~ 47 (78)
T cd01797 15 TVDSLSRLTKVEELREKIQELFNVEP----ECQRLFY 47 (78)
T ss_pred EeeccCCcCcHHHHHHHHHHHhCCCH----HHeEEEe
Confidence 563 7889999999999999999988 5555555
No 74
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=60.14 E-value=8.4 Score=35.88 Aligned_cols=35 Identities=20% Similarity=0.248 Sum_probs=30.4
Q ss_pred cccccCCeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 739 RSRKTRSFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 739 r~r~~~~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
|.||-|..+-+-+-.|+||.+||.||-..+.++|.
T Consensus 6 mIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~ 40 (119)
T cd01788 6 MIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPE 40 (119)
T ss_pred EEEecceEEEeecCCcccHHHHHHHHHHHhcCChh
Confidence 44666677888899999999999999999999996
No 75
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=59.09 E-value=12 Score=37.80 Aligned_cols=34 Identities=21% Similarity=0.386 Sum_probs=25.0
Q ss_pred eecccc-CCceEEEEEEecCCCcEEEEcCCceeecCC
Q 003922 113 HKGTAV-NSGHYIALIKDENTGQWWEFDDEHVSNLGH 148 (786)
Q Consensus 113 H~G~s~-~sGHY~a~vr~~~~~~W~~fnD~~Vt~v~~ 148 (786)
|.|... ..||.+.+++. .+.||.|||+.+.+.+.
T Consensus 130 ~agi~~~g~~Havfa~~t--s~gWy~iDDe~~y~~tP 164 (193)
T PF05408_consen 130 HAGIFLKGQEHAVFACVT--SDGWYAIDDEDFYPWTP 164 (193)
T ss_dssp EEEEEEESTTEEEEEEEE--TTCEEEEETTEEEE---
T ss_pred hhHheecCCcceEEEEEe--eCcEEEecCCeeeeCCC
Confidence 444433 47999999885 68999999999999864
No 76
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=58.49 E-value=13 Score=32.11 Aligned_cols=29 Identities=17% Similarity=0.205 Sum_probs=25.6
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
..+.+.|..+.||.+||-+|-+.+|+++.
T Consensus 13 ~~~~~~v~~~~TV~~lK~~I~~~~~i~~~ 41 (80)
T cd01792 13 NEFLVSLRDSMTVSELKQQIAQKIGVPAF 41 (80)
T ss_pred CEEEEEcCCCCcHHHHHHHHHHHhCCCHH
Confidence 45677899999999999999999998874
No 77
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=55.59 E-value=17 Score=30.51 Aligned_cols=26 Identities=8% Similarity=0.183 Sum_probs=23.7
Q ss_pred EEEEecccccHHHHHHHHHHHhCccc
Q 003922 747 VNLKVSASTSIYQLKMMIWESLGLCS 772 (786)
Q Consensus 747 ~~l~vs~~~t~~~lK~~i~~~~~v~~ 772 (786)
..+.|..+.||.+||.+|-+..|+++
T Consensus 12 ~~l~v~~~~TV~~lK~~I~~~~~i~~ 37 (71)
T cd01808 12 EEIEIAEDASVKDFKEAVSKKFKANQ 37 (71)
T ss_pred EEEEECCCChHHHHHHHHHHHhCCCH
Confidence 36889999999999999999999876
No 78
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=54.10 E-value=23 Score=42.07 Aligned_cols=64 Identities=14% Similarity=0.234 Sum_probs=47.6
Q ss_pred cceEEEehHHHHHHHHhcc--CCCCCCCCCCCCceeecCCCCcCCcccCCCceeeecHHHHHHHHHhh
Q 003922 410 EGTYYVSKSWLQQWTRRKN--LDAPSEADGGPTTSIRCPHGQLMPEKAGGAKRLLVPEILWLFIYEDA 475 (786)
Q Consensus 410 ~~~y~ISk~WLr~W~k~k~--~~~P~piDn~~n~dilC~HG~L~~~~~~~~~~~~V~~~~W~~L~~~f 475 (786)
+..|.++..|...--.+.. .+.||||+..+..|+ +-+.|.++...+-++..|++.+|++|-+-|
T Consensus 45 ~~a~i~~y~wyeg~fd~~~~dg~~pgPi~q~~i~d~--e~e~lk~sl~e~idysiis~~vw~llvrwy 110 (823)
T COG5560 45 EYAVIFAYAWYEGMFDRASCDGGSPGPIVQGPIVDF--EPESLKKSLREGIDYSIISGAVWQLLVRWY 110 (823)
T ss_pred ceEEEEehHHhhhhcccccccCCCCCCCCccccccc--ChhhcchhhhcCCCeeeechHHHHHHHHHh
Confidence 3459999999985433322 456888887775443 457777766667788999999999999998
No 79
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=49.16 E-value=15 Score=31.86 Aligned_cols=29 Identities=17% Similarity=0.152 Sum_probs=22.5
Q ss_pred cccccHHHHHHHHHHHhC--cccccccCceeeee
Q 003922 752 SASTSIYQLKMMIWESLG--LCSTKVFGKHKMLY 783 (786)
Q Consensus 752 s~~~t~~~lK~~i~~~~~--v~~~~~~~~~~~~~ 783 (786)
.+++||.+||.+|.+.++ +++- +|-.+.|
T Consensus 18 ~~~~TV~~LK~kI~~~~~egi~~~---dqQrLIy 48 (75)
T cd01815 18 PGGYQVSTLKQLIAAQLPDSLPDP---ELIDLIH 48 (75)
T ss_pred CccCcHHHHHHHHHHhhccCCCCh---HHeEEEe
Confidence 478999999999999984 7643 6656555
No 80
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=48.29 E-value=26 Score=26.42 Aligned_cols=29 Identities=31% Similarity=0.361 Sum_probs=25.2
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
....+.++.++|+.+||.+|.+.+|+++.
T Consensus 8 ~~~~~~~~~~~tv~~l~~~i~~~~~~~~~ 36 (69)
T cd00196 8 KTVELLVPSGTTVADLKEKLAKKLGLPPE 36 (69)
T ss_pred CEEEEEcCCCCcHHHHHHHHHHHHCcChH
Confidence 56678888999999999999999997763
No 81
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=44.70 E-value=36 Score=30.02 Aligned_cols=29 Identities=24% Similarity=0.235 Sum_probs=26.8
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
..+.++|+.++||..||.++-+..||++.
T Consensus 22 ~~~~~~v~~~~~l~~l~~~y~~~~gi~~~ 50 (87)
T cd01763 22 NEVFFKIKRSTPLKKLMEAYCQRQGLSMN 50 (87)
T ss_pred CEEEEEEcCCCHHHHHHHHHHHHhCCCcc
Confidence 66789999999999999999999999884
No 82
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=40.73 E-value=29 Score=32.37 Aligned_cols=30 Identities=23% Similarity=0.340 Sum_probs=22.0
Q ss_pred cccccCCe--EEEEecccccHHHHHHHHHHHh
Q 003922 739 RSRKTRSF--VNLKVSASTSIYQLKMMIWESL 768 (786)
Q Consensus 739 r~r~~~~~--~~l~vs~~~t~~~lK~~i~~~~ 768 (786)
|+|...|. ..+..+++|||++||-.||..-
T Consensus 6 kf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~W 37 (111)
T PF13881_consen 6 KFRLADGKDIGPFRFDPSTTVADLKERIWAEW 37 (111)
T ss_dssp EEEETTS-EEEEEEE-TTSBHHHHHHHHHHSS
T ss_pred EEEEeCCCcccccccCccChHHHHHHHHHHHC
Confidence 45555543 6778999999999999999643
No 83
>COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=38.37 E-value=24 Score=29.56 Aligned_cols=36 Identities=19% Similarity=0.484 Sum_probs=28.0
Q ss_pred CceecCCCCceeeEEEEEEE--eecCCeeEEEEeeeEE
Q 003922 34 NQYFCDSCGTRVDATRSIKL--RSLPDVLNFQLKRCVF 69 (786)
Q Consensus 34 n~y~Ce~C~~~~~a~k~~~i--~~lP~vLiihLkRF~~ 69 (786)
|++.|.+|+...-..|.+.. ..|.+++=||+++|..
T Consensus 3 ~~~kCpKCgn~~~~ekei~~tg~~lskifdvq~n~f~~ 40 (68)
T COG3478 3 NAFKCPKCGNTNYEEKEIAATGGGLSKIFDVQNNKFIV 40 (68)
T ss_pred ccccCCCcCCcchhhceeeccCCCcceeEEecccEEEE
Confidence 56779999986655666655 4788999999999974
No 84
>cd01778 RASSF1_RA Ubiquitin-like domain of RASSF1 tumour supproessor protein. RASSF1 (also known as RASSF3 and NORE1) is a tumour suppressor protein with a C-terminal Ras-associating (RA) domain that binds Ras. RASSF1 also binds the proapoptotic protein kinase MST1 and is thus thought to regulate the proapoptotic signalling pathway. RASSF1 also associates with microtubule-associated proteins like MAP1B and regulates tubulin polymerization. RASSF1 also binds CDC20 and regulates mitosis by inhibiting the anaphase-promoting complex and preventing degradation of cyclin A and cyclin B until the spindle checkpoint becomes fully operational.
Probab=36.60 E-value=57 Score=29.68 Aligned_cols=49 Identities=12% Similarity=0.192 Sum_probs=38.8
Q ss_pred CCccccccccccC-CeEEEEecccccHHHHHHHHHHHhCcccccccCceeeee
Q 003922 732 PDRRASKRSRKTR-SFVNLKVSASTSIYQLKMMIWESLGLCSTKVFGKHKMLY 783 (786)
Q Consensus 732 ~~~R~s~r~r~~~-~~~~l~vs~~~t~~~lK~~i~~~~~v~~~~~~~~~~~~~ 783 (786)
+++|++.-...++ ....|-||++||.-+.-....+-|.|... -+...||
T Consensus 3 ~~~~~~~sf~lp~~s~k~v~IsS~tTt~eVI~~LL~KF~v~~n---P~kFALY 52 (96)
T cd01778 3 TSLRTSTSLPLPKDTAKHLHISSKTTVREVIEALLKKFLVVDN---PRKFALF 52 (96)
T ss_pred cceeEEEEEeccCCceeEEEEecCCcHHHHHHHHHHhheeccC---CcceEEE
Confidence 3567777777777 55577899999999999999999999875 4555666
No 85
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=36.48 E-value=51 Score=28.99 Aligned_cols=37 Identities=27% Similarity=0.253 Sum_probs=32.8
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccccccCceeeeeccC
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCSTKVFGKHKMLYFRS 786 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~~~~~~~~~~~~~~ 786 (786)
..|.+.|....+.-||.-||.+-|++++ .|++|.||.
T Consensus 11 ~tIaIrvp~~~~y~~L~~ki~~kLkl~~-----e~i~LsYkd 47 (80)
T cd06406 11 YTVAIQVARGLSYATLLQKISSKLELPA-----EHITLSYKS 47 (80)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHhCCCc-----hhcEEEecc
Confidence 4688999999999999999999999986 589988873
No 86
>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=33.98 E-value=18 Score=44.13 Aligned_cols=87 Identities=17% Similarity=0.310 Sum_probs=57.4
Q ss_pred EEEeecCCeeEEEEeeeEEeCCCCceeccc--ceeecccccccccccCCCCCCCceeEEEEEEEeeccccCCceEEEEEE
Q 003922 51 IKLRSLPDVLNFQLKRCVFLPKTTMKKKIT--SPFCFPGELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIK 128 (786)
Q Consensus 51 ~~i~~lP~vLiihLkRF~~d~~~~~~~Ki~--~~V~fP~~Ldl~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vr 128 (786)
..|.+.|+|.+|.|. +. +....|-. +...+..++|++...........+|+|++++.-... +++|.|++.
T Consensus 676 h~is~~P~vftIvle---wE--k~ETe~eI~~T~~aL~teidis~~y~~g~ep~t~yrLVSmv~~~e~---~~~~~C~Ay 747 (806)
T KOG1887|consen 676 HILSPCPPVFTIVLE---WE--KSETEKEISETTKALATEIDISRLYREGLEPNTKYRLVSMVGNHEE---GEEYICFAY 747 (806)
T ss_pred hhcCCCCCeeEeeee---hh--cccchHHHHHHHHHHHhhhhHHHHhhhccCcCceeEEEEEeeeccc---cceEEEeec
Confidence 357789999999554 21 22223322 223344567777654333334789999999865533 789999999
Q ss_pred ecCCCcEE--EEcCCceeecC
Q 003922 129 DENTGQWW--EFDDEHVSNLG 147 (786)
Q Consensus 129 ~~~~~~W~--~fnD~~Vt~v~ 147 (786)
. .+.|. ..+|..+..++
T Consensus 748 e--~Nrwvs~r~~~~~~e~iG 766 (806)
T KOG1887|consen 748 E--PNRWVSLRHEDSQGEVVG 766 (806)
T ss_pred c--CCcchhhHHHHHHhhhcc
Confidence 6 56676 89998887774
No 87
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=28.89 E-value=97 Score=26.83 Aligned_cols=28 Identities=32% Similarity=0.488 Sum_probs=25.3
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCS 772 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~ 772 (786)
..+.+.|+.+||..++=.++++.||+..
T Consensus 17 ~~k~i~v~~~tTa~evi~~~l~k~~l~~ 44 (93)
T PF00788_consen 17 TYKTIKVSSSTTAREVIEMALEKFGLAE 44 (93)
T ss_dssp SEEEEEEETTSBHHHHHHHHHHHTTTSS
T ss_pred cEEEEEECCCCCHHHHHHHHHHHhCCCC
Confidence 4678999999999999999999999933
No 88
>COG5629 Predicted metal-binding protein [Function unknown]
Probab=24.97 E-value=41 Score=35.83 Aligned_cols=88 Identities=23% Similarity=0.462 Sum_probs=56.3
Q ss_pred ccccccCCCCCCCCccccccccHHHHHHHHHHcCCCCCCCchhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhhhcCC
Q 003922 328 TSIQCLHGKVPESKIGSMKRISSKAWNKFFFKYNGGPALTNDDYCMTCLIDGAHTVVCADSYRDRRKSLKGLADDVLSGK 407 (786)
Q Consensus 328 ~~llC~Hg~l~p~k~~~~krIs~~aw~~L~~~ygGgP~l~~~~~C~~C~~~~~~~~~~~~~l~~rr~~~k~l~~~~~~~~ 407 (786)
+-|-|.||..--+....|+++|++-|..|.. |+-|....+ +.++..--....+
T Consensus 86 ~~~~Ckq~~~~l~si~s~ndlPse~W~El~D-------------cWsCH~Dy~--------------e~kS~~ggp~t~~ 138 (321)
T COG5629 86 DGFRCKQGNEILHSIRSMNDLPSEGWEELID-------------CWSCHNDYC--------------EFKSMLGGPLTPR 138 (321)
T ss_pred hhhcccccchhhhhhhhhhhCchhhHHHHHH-------------HHhhccchh--------------hhHhhcCCCCCcC
Confidence 3578999988887788999999999999877 888886432 1112222122233
Q ss_pred cccceEEEehHHHHHHHHhccCCCCCCCCCCCCceeecC
Q 003922 408 LVEGTYYVSKSWLQQWTRRKNLDAPSEADGGPTTSIRCP 446 (786)
Q Consensus 408 ~~~~~y~ISk~WLr~W~k~k~~~~P~piDn~~n~dilC~ 446 (786)
+.+..-+||...|. ....+-+|.+.-+||-.+.|.
T Consensus 139 P~~~~~llg~sy~l----i~~a~legkvaygpNfklhCs 173 (321)
T COG5629 139 PREGGLLLGDSYLL----INDADLEGKVAYGPNFKLHCS 173 (321)
T ss_pred cCCCceEeeeeEEE----echhccCCccccCCCcceeee
Confidence 44444566665543 223445666666677778884
No 89
>PF11164 DUF2948: Protein of unknown function (DUF2948); InterPro: IPR021335 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=23.69 E-value=3.5e+02 Score=26.34 Aligned_cols=72 Identities=18% Similarity=0.236 Sum_probs=48.7
Q ss_pred eecCCeeEEEEeeeEEeCC---CCceecccceeecccccccccccCCCCCCCceeEEEEEEEeeccccCCceEEEE
Q 003922 54 RSLPDVLNFQLKRCVFLPK---TTMKKKITSPFCFPGELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIAL 126 (786)
Q Consensus 54 ~~lP~vLiihLkRF~~d~~---~~~~~Ki~~~V~fP~~Ldl~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~a~ 126 (786)
..--.-+.+-++||.|... ....+++..-+.|...+.+...=-.........+|-||-.+-|.. .+||-.-.
T Consensus 31 ~~~~rrf~l~~NRF~WE~~~~~~~~~eR~rs~L~f~~V~~Vks~gi~~~~~d~vLsLLai~fe~~e~-p~G~v~L~ 105 (138)
T PF11164_consen 31 LPKERRFALLLNRFRWEDAERRGRPPERVRSALRFDRVLAVKSRGIDRKDPDAVLSLLAITFEPGEA-PAGHVLLT 105 (138)
T ss_pred cccCCEEEEEeeeeEeccCccCCCCCcEEEEEEEEccEeeeeecCCCCCCCCceEEEEEEEEEeCCC-CCcEEEEE
Confidence 3334568999999999865 233455666667766655554322333346899999999999885 77886533
No 90
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=23.46 E-value=1.1e+02 Score=26.86 Aligned_cols=24 Identities=8% Similarity=-0.071 Sum_probs=20.2
Q ss_pred eEEEEecccccHHHHHHHHHHHhC
Q 003922 746 FVNLKVSASTSIYQLKMMIWESLG 769 (786)
Q Consensus 746 ~~~l~vs~~~t~~~lK~~i~~~~~ 769 (786)
+..+.|..++||.+||-+|-+.++
T Consensus 15 ~~~ve~~~~~TV~~lK~~i~~~~~ 38 (79)
T cd01790 15 DQTVSCFLNWTVGELKTHLSRVYP 38 (79)
T ss_pred EEEEecCCcChHHHHHHHHHHhcC
Confidence 345556899999999999999996
No 91
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=22.25 E-value=1.4e+02 Score=25.23 Aligned_cols=28 Identities=21% Similarity=0.280 Sum_probs=20.7
Q ss_pred eEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 746 FVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 746 ~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
+..++|+.+|||.|+=.+...-||+.+.
T Consensus 8 r~~vkvtp~~~l~~VL~eac~k~~l~~~ 35 (65)
T PF11470_consen 8 RFKVKVTPNTTLNQVLEEACKKFGLDPS 35 (65)
T ss_dssp EEEE---TTSBHHHHHHHHHHHTT--GG
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCcc
Confidence 4578999999999999999999999994
No 92
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=21.92 E-value=1.4e+02 Score=23.80 Aligned_cols=29 Identities=28% Similarity=0.308 Sum_probs=26.4
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
..+.+.|..+.|+..+|.+|...-|+++.
T Consensus 10 k~~~~~~~~~~~i~~~k~~i~~~~~~~~~ 38 (75)
T KOG0001|consen 10 KTITLEVSPSDTIEVVKAKIRDKEGIPVD 38 (75)
T ss_pred CEEEEEecCCCHHHHHHHHHHhhcCCCCe
Confidence 55678999999999999999999999995
Done!