Query 003922
Match_columns 786
No_of_seqs 398 out of 1797
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 08:23:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003922.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003922hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nb8_A Ubiquitin carboxyl-term 100.0 6.5E-36 2.2E-40 329.0 15.6 208 1-265 137-345 (353)
2 2y6e_A Ubiquitin carboxyl-term 100.0 8.7E-35 3E-39 321.1 19.1 145 1-148 178-342 (367)
3 2f1z_A Ubiquitin carboxyl-term 100.0 2.3E-34 7.7E-39 332.7 16.0 207 1-264 306-513 (522)
4 2gfo_A Ubiquitin carboxyl-term 100.0 4.2E-34 1.4E-38 319.5 16.7 144 1-147 232-378 (396)
5 3nhe_A Ubiquitin carboxyl-term 100.0 1.3E-33 4.6E-38 307.6 16.8 144 1-148 178-326 (348)
6 3i3t_A Ubiquitin carboxyl-term 100.0 5.9E-33 2E-37 303.4 12.9 142 1-148 186-334 (355)
7 2ayn_A Ubiquitin carboxyl-term 100.0 4.9E-32 1.7E-36 302.4 13.2 143 1-149 179-371 (404)
8 1vjv_A Ubiquitin carboxyl-term 100.0 1.1E-31 3.8E-36 301.2 15.4 144 1-149 171-391 (415)
9 3mhs_A Ubiquitin carboxyl-term 100.0 1.9E-31 6.6E-36 304.5 16.2 144 1-148 305-457 (476)
10 3ihp_A Ubiquitin carboxyl-term 100.0 9E-29 3.1E-33 299.4 16.7 92 1-96 500-623 (854)
11 4a3p_A Ubiquitin carboxyl-term 99.1 2.1E-09 7E-14 110.1 16.7 100 519-637 8-115 (217)
12 2vhf_A Ubiquitin carboxyl-term 99.0 2.5E-10 8.5E-15 123.7 8.4 78 53-141 163-309 (374)
13 1w6v_A Ubiquitin carboxyl-term 99.0 1.1E-09 3.9E-14 104.4 9.6 84 283-368 31-136 (141)
14 3jyu_A Ubiquitin carboxyl-term 98.9 1.2E-08 3.9E-13 105.5 15.1 95 519-631 17-119 (231)
15 4a3p_A Ubiquitin carboxyl-term 98.9 1.9E-09 6.4E-14 110.4 8.7 84 282-367 6-111 (217)
16 1w6v_A Ubiquitin carboxyl-term 98.8 1.9E-08 6.4E-13 96.0 11.0 82 534-630 44-133 (141)
17 3jyu_A Ubiquitin carboxyl-term 98.8 6.7E-09 2.3E-13 107.2 6.9 85 282-368 15-121 (231)
18 4dbg_A Ranbp-type and C3HC4-ty 91.3 0.21 7.2E-06 44.7 4.8 47 727-773 16-65 (105)
19 1wju_A NEDD8 ultimate buster-1 89.2 0.61 2.1E-05 41.3 6.0 29 745-773 30-58 (100)
20 1wjn_A Tubulin-folding protein 87.8 0.44 1.5E-05 41.6 4.2 36 745-783 23-58 (97)
21 4ajy_B Transcription elongatio 87.0 0.6 2.1E-05 42.6 4.6 35 739-773 6-40 (118)
22 3a9j_A Ubiquitin; protein comp 86.2 0.75 2.6E-05 37.4 4.5 29 745-773 11-39 (76)
23 1ndd_A NEDD8, protein (ubiquit 86.0 0.78 2.7E-05 37.3 4.5 29 745-773 11-39 (76)
24 2dzm_A FAS-associated factor 1 85.8 0.79 2.7E-05 40.6 4.7 33 745-780 19-51 (100)
25 2fnj_B Transcription elongatio 85.6 0.78 2.7E-05 41.9 4.6 34 740-773 7-40 (118)
26 2kjr_A CG11242; UBL, ubiquitin 85.5 0.87 3E-05 39.8 4.8 34 746-782 29-62 (95)
27 3mtn_B UBA80, ubcep1, ubiquiti 85.3 0.96 3.3E-05 37.7 4.8 29 745-773 14-42 (85)
28 3dbh_I NEDD8; cell cycle, acti 85.2 0.87 3E-05 38.4 4.6 29 745-773 23-51 (88)
29 1wh3_A 59 kDa 2'-5'-oligoadeny 85.0 1.3 4.4E-05 37.4 5.6 29 745-773 18-46 (87)
30 3n3k_B Ubiquitin; hydrolase, p 84.9 0.91 3.1E-05 37.9 4.5 29 745-773 14-42 (85)
31 2kj6_A Tubulin folding cofacto 84.6 0.99 3.4E-05 39.7 4.7 28 746-773 28-55 (97)
32 3plu_A Ubiquitin-like modifier 84.4 1.1 3.8E-05 39.1 4.9 29 745-773 32-60 (93)
33 3phx_B Ubiquitin-like protein 83.9 1.3 4.3E-05 36.7 4.9 29 745-773 15-43 (79)
34 1wf9_A NPL4 family protein; be 83.8 0.95 3.2E-05 40.3 4.3 34 744-780 16-50 (107)
35 2dzi_A Ubiquitin-like protein 83.7 1.3 4.4E-05 36.6 4.9 29 745-773 18-46 (81)
36 2bwf_A Ubiquitin-like protein 83.2 1.2 4.1E-05 36.4 4.5 29 745-773 14-42 (77)
37 4dwf_A HLA-B-associated transc 83.0 1.4 4.7E-05 37.5 4.9 29 745-773 16-44 (90)
38 1sif_A Ubiquitin; hydrophobic 83.0 1.2 4.2E-05 37.9 4.6 29 745-773 20-48 (88)
39 4eew_A Large proline-rich prot 82.6 1.4 4.9E-05 37.2 4.9 29 745-773 28-56 (88)
40 3v6c_B Ubiquitin; structural g 82.5 1.4 4.9E-05 37.6 4.8 29 745-773 28-56 (91)
41 1wx8_A Riken cDNA 4931431F19; 82.2 1.3 4.5E-05 38.2 4.5 29 745-773 27-55 (96)
42 3k9o_B Ubiquitin, UBB+1; E2-25 82.1 1.3 4.6E-05 38.0 4.5 29 745-773 12-40 (96)
43 2kk8_A Uncharacterized protein 81.5 1.7 5.6E-05 36.9 4.8 29 745-773 21-49 (84)
44 1wy8_A NP95-like ring finger p 81.0 1.9 6.5E-05 36.5 5.0 33 745-780 19-52 (89)
45 4fbj_B NEDD8; effector-HOST ta 81.0 1.6 5.4E-05 37.2 4.5 29 745-773 11-39 (88)
46 2faz_A Ubiquitin-like containi 80.9 2.1 7E-05 35.2 5.1 26 748-773 17-43 (78)
47 4b6w_A Tubulin-specific chaper 80.9 1.3 4.4E-05 38.0 3.9 27 747-773 17-43 (86)
48 2hj8_A Interferon-induced 17 k 80.7 1.7 5.7E-05 37.0 4.6 29 745-773 15-43 (88)
49 2kd0_A LRR repeats and ubiquit 80.2 1.8 6.2E-05 36.7 4.6 33 745-780 22-54 (85)
50 3vdz_A Ubiquitin-40S ribosomal 79.9 1.9 6.6E-05 38.5 4.9 29 745-773 46-74 (111)
51 2kan_A Uncharacterized protein 79.7 2.2 7.4E-05 37.0 5.0 29 745-773 25-53 (94)
52 1v6e_A Cytoskeleton-associated 79.7 1.8 6.2E-05 37.5 4.5 34 746-782 20-53 (95)
53 1yx5_B Ubiquitin; proteasome, 79.3 1.9 6.4E-05 37.4 4.5 29 745-773 11-39 (98)
54 4hcn_B Polyubiquitin, ubiquiti 78.8 2 6.8E-05 37.4 4.5 29 745-773 33-61 (98)
55 1v5o_A 1700011N24RIK protein; 78.7 2.1 7.3E-05 37.5 4.7 33 746-781 23-55 (102)
56 2ojr_A Ubiquitin; lanthide-bin 78.5 2.2 7.5E-05 38.1 4.8 29 745-773 46-74 (111)
57 1we6_A Splicing factor, putati 78.3 2.1 7.2E-05 38.2 4.6 34 745-781 41-75 (111)
58 2l7r_A Ubiquitin-like protein 78.2 2.2 7.7E-05 36.7 4.6 29 745-773 28-56 (93)
59 2pjh_A Protein NPL4, nuclear p 78.2 1.1 3.9E-05 37.8 2.6 40 739-781 8-47 (80)
60 2kdi_A Ubiquitin, vacuolar pro 77.5 2.2 7.6E-05 38.4 4.5 29 745-773 20-48 (114)
61 1wx7_A Ubiquilin 3; ubiquitin- 77.1 3.6 0.00012 36.2 5.8 32 746-780 28-59 (106)
62 1v86_A DNA segment, CHR 7, way 77.0 2 6.8E-05 37.3 4.0 34 745-781 27-60 (95)
63 2klc_A Ubiquilin-1; ubiquitin- 76.7 2.7 9.1E-05 36.9 4.7 29 745-773 35-63 (101)
64 1yqb_A Ubiquilin 3; structural 76.3 3 0.0001 36.5 4.9 28 746-773 33-60 (100)
65 2kzr_A Ubiquitin thioesterase 74.9 2.1 7.2E-05 36.3 3.5 35 745-782 10-45 (86)
66 2uyz_B Small ubiquitin-related 74.7 3.2 0.00011 34.2 4.5 29 745-773 14-42 (79)
67 1we7_A SF3A1 protein; structur 74.3 2.7 9.1E-05 37.8 4.2 29 745-773 46-74 (115)
68 1ttn_A DC-UBP, dendritic cell- 74.2 2.6 8.8E-05 37.3 4.0 33 745-780 34-66 (106)
69 1j8c_A Ubiquitin-like protein 73.3 3.5 0.00012 37.7 4.8 29 745-773 42-70 (125)
70 1uh6_A Ubiquitin-like 5; beta- 72.5 3.9 0.00013 36.1 4.6 29 745-773 39-67 (100)
71 1v5t_A 8430435I17RIK protein; 71.9 2.6 9E-05 36.0 3.4 34 745-781 17-51 (90)
72 2wyq_A HHR23A, UV excision rep 71.7 4.5 0.00015 33.6 4.8 29 745-773 16-47 (85)
73 1v2y_A 3300001G02RIK protein; 71.6 2 6.7E-05 38.4 2.5 29 745-773 18-46 (105)
74 1t0y_A Tubulin folding cofacto 71.6 4 0.00014 37.1 4.7 28 746-773 19-46 (122)
75 3m62_B UV excision repair prot 71.3 2.9 9.9E-05 37.0 3.6 29 745-773 12-40 (106)
76 1wyw_B Ubiquitin-like protein 71.0 4.1 0.00014 35.3 4.5 29 745-773 32-60 (97)
77 1wgd_A Homocysteine-responsive 70.1 4.1 0.00014 34.8 4.3 28 746-773 21-50 (93)
78 1wgg_A Ubiquitin carboxyl-term 69.7 4.1 0.00014 35.4 4.1 34 745-781 17-51 (96)
79 3q3f_A Ribonuclease/ubiquitin 69.4 4.3 0.00015 40.0 4.7 34 745-781 116-149 (189)
80 1wxv_A BAG-family molecular ch 69.2 5.6 0.00019 33.9 4.9 33 745-780 17-54 (92)
81 3u30_A Ubiquitin, linear DI-ub 68.5 4.3 0.00015 38.9 4.5 29 745-773 31-59 (172)
82 3m63_B Ubiquitin domain-contai 67.3 2.6 9E-05 37.0 2.4 29 745-773 38-66 (101)
83 1uel_A HHR23B, UV excision rep 66.4 6.1 0.00021 34.0 4.6 29 745-773 11-42 (95)
84 3b1l_X E3 ubiquitin-protein li 68.7 1.3 4.5E-05 36.2 0.0 28 746-773 12-39 (76)
85 3u5e_m 60S ribosomal protein L 63.0 1.5 5.2E-05 40.2 0.0 29 745-773 11-39 (128)
86 3rt3_B Ubiquitin-like protein 62.9 7.3 0.00025 36.6 4.8 29 745-773 92-120 (159)
87 4a20_A Ubiquitin-like protein 62.1 6.9 0.00023 34.3 4.1 28 746-773 33-61 (98)
88 3rt3_B Ubiquitin-like protein 58.3 6.9 0.00024 36.8 3.7 29 745-773 13-41 (159)
89 2kdb_A Homocysteine-responsive 58.0 9.8 0.00034 33.3 4.4 27 746-772 37-64 (99)
90 3b08_A Polyubiquitin-C, ubiqui 57.6 7.5 0.00026 35.9 3.8 29 745-773 11-39 (152)
91 3b08_A Polyubiquitin-C, ubiqui 57.2 11 0.00038 34.7 4.9 29 745-773 87-115 (152)
92 3u30_A Ubiquitin, linear DI-ub 56.1 11 0.00036 36.1 4.7 29 745-773 107-135 (172)
93 2lxa_A Ubiquitin-like protein 55.7 7.4 0.00025 33.2 3.1 26 748-773 17-43 (87)
94 3ai5_A Yeast enhanced green fl 47.2 17 0.00058 38.5 4.8 33 745-780 244-276 (307)
95 2v1y_A Phosphatidylinositol-4, 44.0 17 0.00058 32.5 3.6 28 746-773 31-58 (108)
96 3u5c_f 40S ribosomal protein S 43.5 4.9 0.00017 38.1 0.0 28 746-773 12-39 (152)
97 2dzj_A Synaptic glycoprotein S 42.1 25 0.00086 29.8 4.3 26 748-773 26-53 (88)
98 1x1m_A Ubiquitin-like protein 40.3 19 0.00066 31.6 3.4 23 751-773 40-65 (107)
99 1oey_A P67-PHOX, neutrophil cy 36.7 35 0.0012 29.0 4.2 37 745-786 14-50 (83)
100 2daf_A FLJ35834 protein; hypot 33.1 43 0.0015 30.3 4.4 29 745-773 27-55 (118)
101 1wgh_A Ubiquitin-like 3, HCG-1 33.1 42 0.0014 30.2 4.4 24 745-768 27-50 (116)
102 1se9_A Ubiquitin family; ubiqu 32.7 52 0.0018 30.1 5.0 27 746-772 28-60 (126)
103 4efo_A Serine/threonine-protei 29.5 60 0.0021 28.1 4.6 29 745-773 24-52 (94)
104 2bps_A YUKD protein; ubiquitin 28.3 46 0.0016 28.1 3.6 28 745-772 17-44 (81)
105 3mp2_A Non-structural protein 27.1 46 0.0016 33.2 3.9 34 109-147 162-195 (211)
106 2gow_A HCG-1 protein, ubiquiti 26.9 47 0.0016 30.3 3.7 24 745-768 28-51 (125)
107 1wia_A Hypothetical ubiquitin- 21.3 51 0.0017 27.8 2.7 24 745-768 18-41 (95)
No 1
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=100.00 E-value=6.5e-36 Score=329.03 Aligned_cols=208 Identities=32% Similarity=0.526 Sum_probs=161.7
Q ss_pred CCcceEEEeeCCCCCCHHHHHHhcccceEecCCCceecCCCCceeeEEEEEEEeecCCeeEEEEeeeEEeCCCCceeccc
Q 003922 1 MEDFYELELNVKGLKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKKKIT 80 (786)
Q Consensus 1 ~E~F~~LsL~i~~~~sL~d~L~~f~~~E~L~gdn~y~Ce~C~~~~~a~k~~~i~~lP~vLiihLkRF~~d~~~~~~~Ki~ 80 (786)
.|+|++|+|+|++..+|.+||..|+.+|.|+|+|+|.|+.|+ ++.|.|++.|.+||+||+|||+||.|+..++...|++
T Consensus 137 ~e~f~~LsL~i~~~~~l~~~L~~~~~~E~l~~~~~~~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~K~~ 215 (353)
T 1nb8_A 137 REDYYDIQLSIKGKKNIFESFVDYVAVEQLDGDNKYDAGEHG-LQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKIN 215 (353)
T ss_dssp EEEESCEEECCTTCSBHHHHHHHHTCCEEECTTTCEECGGGC-EECEEEEEEESCCCSEEEEEECCCC--------CCCC
T ss_pred eeeeEEEEEEECCCcchHHHHHHhhCccccCCCccccCCcCc-cEeeEEEEEhhcCCCceEEEEecEEEecccCceEecC
Confidence 378999999999999999999999999999999999999997 6889999999999999999999999998777889999
Q ss_pred ceeecccccccccccCCCC-CCCceeEEEEEEEeeccccCCceEEEEEEecCCCcEEEEcCCceeecCCCCCCCCCCCCC
Q 003922 81 SPFCFPGELNMQRRLSEPS-QLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGHHPFGEGSSSSG 159 (786)
Q Consensus 81 ~~V~fP~~Ldl~~~~~~~~-~~~~~Y~L~aVI~H~G~s~~sGHY~a~vr~~~~~~W~~fnD~~Vt~v~~~~~~~~~~~~~ 159 (786)
+.|.||..|||.+|+.... .....|+|+|||+|.|+ +++|||+||+|+..++.||.|||+.|++++.+.+.....|+.
T Consensus 216 ~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~-~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~gg~ 294 (353)
T 1nb8_A 216 DRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSGD-NHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGH 294 (353)
T ss_dssp CCCBCCSEEECGGGBSSCCTTSCCEEEEEEEEEEESS-TTCCCEEEEECTTSSSCCEEEETTEEEECCHHHHTGGGSCCC
T ss_pred cEEECCCeeehhhhhcccCCCCCceEEEEEEEEEeCC-CCCcEEEEEEecCCCCCEEEEECcceEECCHHHHHHHhcCCC
Confidence 9999999999999987643 23689999999999999 599999999997678999999999999998544332222110
Q ss_pred CccccCCCccccCccccccccCCCCcccCCCCccccCCCccccccCCceEEEEEEecCcccccccccccccccchhhhhh
Q 003922 160 SKVVRSEPVVCQPVSERVEGANENHVDVHLPSSEYYNGSNVERFTSNDAYMLMYNLRRDKEDSKRKDVVHDVNNMEIESE 239 (786)
Q Consensus 160 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~AYmL~Y~r~~~~~~~~~~~~~~~~~~~~~~~~ 239 (786)
.. ......+.+||||||+|.+.... .+
T Consensus 295 ~~-------------------------------------~~~~~~~~~aYiLfY~r~~~~~~-----~~----------- 321 (353)
T 1nb8_A 295 DD-------------------------------------DLSVRHCTNAYMLVYIRESKLSE-----VL----------- 321 (353)
T ss_dssp --------------------------------------------CCEEEEEEEEEETTTHHH-----HT-----------
T ss_pred cc-------------------------------------ccccCcCCeEEEEEEEECchhhh-----hh-----------
Confidence 00 00011357899999999875321 11
Q ss_pred hhhcCCCCCCChHHHHHHHHHHHHHH
Q 003922 240 MIFFNDDIFLPSHLGKDIKELNRSYL 265 (786)
Q Consensus 240 ~~~~~~~~~lP~~l~~~V~~~N~~f~ 265 (786)
..-....+|+++.+.+.++|..-.
T Consensus 322 --~~~~~~~~p~~~~~~~~~~~~~~~ 345 (353)
T 1nb8_A 322 --QAVTDHDIPQQLVERLQEEKRIEA 345 (353)
T ss_dssp --CCCCGGGSCHHHHHHHHHHHHHHH
T ss_pred --cccCccccCHHHHHHHHHHHHHHH
Confidence 111234689999999998887654
No 2
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=100.00 E-value=8.7e-35 Score=321.12 Aligned_cols=145 Identities=30% Similarity=0.524 Sum_probs=132.6
Q ss_pred CCcceEEEeeCCC-------------------CCCHHHHHHhcccceEecCCCceecCCCCceeeEEEEEEEeecCCeeE
Q 003922 1 MEDFYELELNVKG-------------------LKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLN 61 (786)
Q Consensus 1 ~E~F~~LsL~i~~-------------------~~sL~d~L~~f~~~E~L~gdn~y~Ce~C~~~~~a~k~~~i~~lP~vLi 61 (786)
+|+|++|+|+|+. ..+|++||+.|+.+|.|+|+|+|+|++|+.++.|+|+..|.+||+||+
T Consensus 178 ~e~f~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~f~~~E~l~~~~~~~C~~C~~~~~a~K~~~i~~lP~vL~ 257 (367)
T 2y6e_A 178 FDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRDCIELFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILV 257 (367)
T ss_dssp EEEESSEEEECCC-------------------CEEHHHHHHHHTSCEECCC-CCEEETTTTEEECCEEEEEEEECCSEEE
T ss_pred EccCeeEEeeCCCCcCCcceeeeeccccccCCCCCHHHHHHHhcccccCCCCCCccCCCCCCCceEEEEEEEecCCcEEE
Confidence 3799999999964 358999999999999999999999999999999999999999999999
Q ss_pred EEEeeeEEeCCCCceecccceeeccc-ccccccccCCCCCCCceeEEEEEEEeeccccCCceEEEEEEecCCCcEEEEcC
Q 003922 62 FQLKRCVFLPKTTMKKKITSPFCFPG-ELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDD 140 (786)
Q Consensus 62 ihLkRF~~d~~~~~~~Ki~~~V~fP~-~Ldl~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vr~~~~~~W~~fnD 140 (786)
||||||.|+. ....|+++.|.||. .|||.+|+..+......|+|+|||+|.|+ +++|||+||+|+..+++||+|||
T Consensus 258 i~LkRF~~~~--~~~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~-~~~GHY~a~~~~~~~~~W~~fnD 334 (367)
T 2y6e_A 258 VHLKRFSYNR--YWRDKLDTVVEFPIRGLNMSEFVCNLSARPYVYDLIAVSNHYGA-MGVGHYTAYAKNKLNGKWYYFDD 334 (367)
T ss_dssp EEEECEEECS--SCEEECCCCEECCSSCEECGGGBSCSSSCCCEEEEEEEEEEECS-SSSCEEEEEEECTTTCCEEEEET
T ss_pred EEEeCeeecC--ccceecCceEEecCCcCChhhhccCCCCCCceEEEEEEeecCCC-CCCCeeeEEEEcCCCCeEEEECC
Confidence 9999999975 46789999999997 69999999877666789999999999998 69999999999876899999999
Q ss_pred CceeecCC
Q 003922 141 EHVSNLGH 148 (786)
Q Consensus 141 ~~Vt~v~~ 148 (786)
+.|++++.
T Consensus 335 ~~V~~v~~ 342 (367)
T 2y6e_A 335 SNVSLASE 342 (367)
T ss_dssp TEEEECCG
T ss_pred CCceECCH
Confidence 99999863
No 3
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=100.00 E-value=2.3e-34 Score=332.69 Aligned_cols=207 Identities=32% Similarity=0.530 Sum_probs=167.6
Q ss_pred CCcceEEEeeCCCCCCHHHHHHhcccceEecCCCceecCCCCceeeEEEEEEEeecCCeeEEEEeeeEEeCCCCceeccc
Q 003922 1 MEDFYELELNVKGLKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKKKIT 80 (786)
Q Consensus 1 ~E~F~~LsL~i~~~~sL~d~L~~f~~~E~L~gdn~y~Ce~C~~~~~a~k~~~i~~lP~vLiihLkRF~~d~~~~~~~Ki~ 80 (786)
.|+|++|+|+|++..+|++||..|+.+|.|+|+|+|.|+.|+ ++.|.|++.|.+||+||+||||||.|+..++...|++
T Consensus 306 ~e~f~~LsL~i~~~~~l~~~L~~~~~~E~l~~~n~~~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~ 384 (522)
T 2f1z_A 306 REDYYDIQLSIKGKKNIFESFVDYVAVEQLDGDNKYDAGEHG-LQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKIN 384 (522)
T ss_dssp EEEESCEEECCTTCCBHHHHHHHHTCEEEECTTSCBCCGGGC-SBCEEEEEEESCCCSEEEEEECCEEECSSSSCEEECC
T ss_pred eeeeEEEEEEeCCcccchHHHHHhhceeecCCcceeecCcCC-ccceEEEEEeecCCceEEEEEEeEEEcccCCcceEcC
Confidence 378999999999999999999999999999999999999997 5889999999999999999999999998778889999
Q ss_pred ceeecccccccccccCCCC-CCCceeEEEEEEEeeccccCCceEEEEEEecCCCcEEEEcCCceeecCCCCCCCCCCCCC
Q 003922 81 SPFCFPGELNMQRRLSEPS-QLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGHHPFGEGSSSSG 159 (786)
Q Consensus 81 ~~V~fP~~Ldl~~~~~~~~-~~~~~Y~L~aVI~H~G~s~~sGHY~a~vr~~~~~~W~~fnD~~Vt~v~~~~~~~~~~~~~ 159 (786)
+.|.||..|||.+|+.... .....|+|+|||+|.|+ +++|||+||+|+..+++||+|||+.|++++.+.+.....++.
T Consensus 385 ~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~-~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~Gg~ 463 (522)
T 2f1z_A 385 DRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSGD-NHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGH 463 (522)
T ss_dssp CCCBCCSEEECGGGBSSCCTTSCCEEEEEEEEEEECS-SSCSEEEEEECTTSSSCCEEEETTEEEECCHHHHSTTSSCCC
T ss_pred cEEeCCCeecchhhhccccCCCCcEEEEEEEEEeccc-CCCceEEEEEecCCCCCEEEEECceeEECCHHHHHHhhcCCC
Confidence 9999999999999987643 23689999999999999 599999999997678999999999999998654433222210
Q ss_pred CccccCCCccccCccccccccCCCCcccCCCCccccCCCccccccCCceEEEEEEecCcccccccccccccccchhhhhh
Q 003922 160 SKVVRSEPVVCQPVSERVEGANENHVDVHLPSSEYYNGSNVERFTSNDAYMLMYNLRRDKEDSKRKDVVHDVNNMEIESE 239 (786)
Q Consensus 160 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~AYmL~Y~r~~~~~~~~~~~~~~~~~~~~~~~~ 239 (786)
.. ......+.+||||||+|.+.... .+
T Consensus 464 ~~-------------------------------------~~~~~~~~~aYiLfY~r~~~~~~-----~~----------- 490 (522)
T 2f1z_A 464 DD-------------------------------------DLSVRHCTNAYMLVYIRESKLSE-----VL----------- 490 (522)
T ss_dssp ---------------------------------------------CEEEEEEEEEETTSHHH-----HT-----------
T ss_pred cc-------------------------------------ccccCcCCceEEEEEEECCchHH-----hh-----------
Confidence 00 00011357899999999875321 11
Q ss_pred hhhcCCCCCCChHHHHHHHHHHHHH
Q 003922 240 MIFFNDDIFLPSHLGKDIKELNRSY 264 (786)
Q Consensus 240 ~~~~~~~~~lP~~l~~~V~~~N~~f 264 (786)
.......+|++|.+.++++|+.-
T Consensus 491 --~~~~~~~ip~~~~~~~~~e~~~~ 513 (522)
T 2f1z_A 491 --QAVTDHDIPQQLVERLQEEKRIE 513 (522)
T ss_dssp --CCCCTTTSCSHHHHHHHHTTTCC
T ss_pred --cccCccCCCHHHHHHHHHHHHHH
Confidence 11233568999999888776543
No 4
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=100.00 E-value=4.2e-34 Score=319.45 Aligned_cols=144 Identities=31% Similarity=0.554 Sum_probs=132.8
Q ss_pred CCcceEEEeeCCC--CCCHHHHHHhcccceEecCCCceecCCCCceeeEEEEEEEeecCCeeEEEEeeeEEeCCCCceec
Q 003922 1 MEDFYELELNVKG--LKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKKK 78 (786)
Q Consensus 1 ~E~F~~LsL~i~~--~~sL~d~L~~f~~~E~L~gdn~y~Ce~C~~~~~a~k~~~i~~lP~vLiihLkRF~~d~~~~~~~K 78 (786)
+|+|++|+|+|+. ..+|++||+.|+.+|.|+|+|+|+|++|+.+++|.|++.|.+||+||+||||||.|+. ....|
T Consensus 232 ~e~f~~LsL~ip~~~~~sL~~~L~~f~~~E~l~~~n~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~--~~~~K 309 (396)
T 2gfo_A 232 FEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDG--RWKQK 309 (396)
T ss_dssp EEEESSEEECCSCSSEEEHHHHHHHHTSCEEECSTTCEEETTTTEEECEEEEEEEEECCSEEEEEECCEEECS--SSEEE
T ss_pred cccceeeeecccccccCCHHHHHHHhCCcccccCCcccccCCcccccceEEEEEEecCCcEEEEEecceeccC--cccee
Confidence 4799999999986 4589999999999999999999999999999999999999999999999999999975 45689
Q ss_pred ccceeeccc-ccccccccCCCCCCCceeEEEEEEEeeccccCCceEEEEEEecCCCcEEEEcCCceeecC
Q 003922 79 ITSPFCFPG-ELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLG 147 (786)
Q Consensus 79 i~~~V~fP~-~Ldl~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vr~~~~~~W~~fnD~~Vt~v~ 147 (786)
+++.|.||. .|||.+|+..+......|+|+|||+|.|+ +++|||+||+|+..+++||+|||+.|++++
T Consensus 310 ~~~~v~fp~~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~-~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~ 378 (396)
T 2gfo_A 310 LQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYGG-LDGGHYTAYCKNAARQRWFKFDDHEVSDIS 378 (396)
T ss_dssp CCCEEECCSSCBCCGGGBCSCCSSCCCBEEEEEEEEESC-TTTCEEEEEEEETTTTEEEEEETTEEEECC
T ss_pred cCceEecchhhccccccccCCCCCCceEEEEEEEEecCC-CCCCceEEEEcCCCCCCEEEEeCCCeEECC
Confidence 999999995 69999999876555789999999999995 699999999999767999999999999986
No 5
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=100.00 E-value=1.3e-33 Score=307.60 Aligned_cols=144 Identities=28% Similarity=0.508 Sum_probs=132.3
Q ss_pred CCcceEEEeeCCCC----CCHHHHHHhcccceEecCCCceecCCCCceeeEEEEEEEeecCCeeEEEEeeeEEeCCCCce
Q 003922 1 MEDFYELELNVKGL----KTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMK 76 (786)
Q Consensus 1 ~E~F~~LsL~i~~~----~sL~d~L~~f~~~E~L~gdn~y~Ce~C~~~~~a~k~~~i~~lP~vLiihLkRF~~d~~~~~~ 76 (786)
+|+|++|+|+|+.. .+|++||+.|+.+|.++|+|+|+|++|+.++.+.|+..|.+||+||+|||+||.++. +..
T Consensus 178 ~e~f~~LsL~i~~~~~~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vL~i~lkRf~~~~--~~~ 255 (348)
T 3nhe_A 178 FDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRFSESR--IRT 255 (348)
T ss_dssp EEEESSEEECCCSSCSSCEEHHHHHHHHHSCEEECGGGCCEETTTTEECCEEEEEEEEECCSEEEEEECCBCCCS--SCC
T ss_pred eccceEEeeeCCCcccCCCCHHHHHHHhcCceEecCCCceECCCCCCcccEEEEEEeecCCceEEEEEEcccccC--Cce
Confidence 37999999999874 399999999999999999999999999999999999999999999999999998864 677
Q ss_pred ecccceeeccc-ccccccccCCCCCCCceeEEEEEEEeeccccCCceEEEEEEecCCCcEEEEcCCceeecCC
Q 003922 77 KKITSPFCFPG-ELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGH 148 (786)
Q Consensus 77 ~Ki~~~V~fP~-~Ldl~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vr~~~~~~W~~fnD~~Vt~v~~ 148 (786)
.|+++.|.||. .|||.+|+..... ...|+|+|||+|.|+ +++|||+||+|+..++.||+|||+.|++++.
T Consensus 256 ~K~~~~v~fp~~~ldl~~~~~~~~~-~~~Y~L~avv~H~G~-~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~~ 326 (348)
T 3nhe_A 256 SKLTTFVNFPLRDLDLREFASENTN-HAVYNLYAVSNHSGT-TMGGHYTAYCRSPGTGEWHTFNDSSVTPMSS 326 (348)
T ss_dssp CBCCCCEECCSSCEECGGGBCTTCC-CCEEEEEEEEEEEEC-SSCEEEEEEEECTTTCCEEEEETTEEEEECG
T ss_pred eecCcceeccCCcCCHhhhcCCCCC-CCcEEEEEEEEccCC-CCCcccEEEEccCCCCcEEEEeCCCceECCH
Confidence 89999999995 7999999976554 689999999999997 5999999999987789999999999999964
No 6
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=99.98 E-value=5.9e-33 Score=303.36 Aligned_cols=142 Identities=27% Similarity=0.468 Sum_probs=126.9
Q ss_pred CCcceEEEeeCCC------CCCHHHHHHhcccceEecCCCceecCCCCceeeEEEEEEEeecCCeeEEEEeeeEEeCCCC
Q 003922 1 MEDFYELELNVKG------LKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTT 74 (786)
Q Consensus 1 ~E~F~~LsL~i~~------~~sL~d~L~~f~~~E~L~gdn~y~Ce~C~~~~~a~k~~~i~~lP~vLiihLkRF~~d~~~~ 74 (786)
.|+|++|+|+|+. ..+|++||+.|+.+|.++|+|+|+|++|+.++.|.|+..|.+||+||+||||||.++. +
T Consensus 186 ~e~f~~lsl~i~~~~~~~~~~sl~~~L~~~~~~e~l~~~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~lkRF~~~~--~ 263 (355)
T 3i3t_A 186 FEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSASR--G 263 (355)
T ss_dssp EEEESSEEECCCC-------CBHHHHHHHHHCCEEECGGGCCCCSSSCCCCCEEEEEEEEECCSEEEEEECCEECCS--S
T ss_pred eccceeecccCCccccccCccCHHHHHHHhCCccccCCCCCeeCCCCCCccceEEEEEcccCChheEEEhhheecCC--C
Confidence 3789999999975 3599999999999999999999999999999999999999999999999999999864 6
Q ss_pred ceecccceeeccc-ccccccccCCCCCCCceeEEEEEEEeeccccCCceEEEEEEecCCCcEEEEcCCceeecCC
Q 003922 75 MKKKITSPFCFPG-ELNMQRRLSEPSQLDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGH 148 (786)
Q Consensus 75 ~~~Ki~~~V~fP~-~Ldl~~~~~~~~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vr~~~~~~W~~fnD~~Vt~v~~ 148 (786)
...|+++.|.||. .|||.+|+..... ...|+|+|||+|.|+ +++|||+||+|+ .+.||+|||+.|++++.
T Consensus 264 ~~~K~~~~v~fp~~~l~l~~~~~~~~~-~~~Y~L~avv~H~G~-~~~GHY~~~~~~--~~~W~~~nD~~V~~v~~ 334 (355)
T 3i3t_A 264 SIKKSSVGVDFPLQRLSLGDFASDKAG-SPVYQLYALCNHSGS-VHYGHYTALCRC--QTGWHVYNDSRVSPVSE 334 (355)
T ss_dssp CCEECCCCCBCCSSCEECGGGBC-----CCEEEEEEEEEEEEE-TTEEEEEEEEEE--TTEEEEEETTEEEEECH
T ss_pred CceECCcceeCCccccCchhhccCCCC-CcceEEEEEEEecCC-CCCCeEEEEEEc--CCeEEEEcCCCcEECCH
Confidence 7789999999995 5999999876554 679999999999996 699999999997 46799999999999963
No 7
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=99.97 E-value=4.9e-32 Score=302.35 Aligned_cols=143 Identities=29% Similarity=0.384 Sum_probs=127.2
Q ss_pred CCcceEEEeeCCCC-CCHHHHHHhcccceEecCCCceecCCCCceeeEEEEEEEeecCCeeEEEEeeeEEeCCCCceecc
Q 003922 1 MEDFYELELNVKGL-KTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKKKI 79 (786)
Q Consensus 1 ~E~F~~LsL~i~~~-~sL~d~L~~f~~~E~L~gdn~y~Ce~C~~~~~a~k~~~i~~lP~vLiihLkRF~~d~~~~~~~Ki 79 (786)
+|+|++|+|+|++. .+|++||+.|+. |.++ |+|++|+..+.+.|+..|.+||+||+|||+||.|+..++...|+
T Consensus 179 ~e~f~~Lsl~i~~~~~~l~~~L~~~~~-e~l~----~~c~~c~~~~~~~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki 253 (404)
T 2ayn_A 179 KENQLQLSCFINQEVKYLFTGLKLRLQ-EEIT----KQSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKV 253 (404)
T ss_dssp EEEESSEEEECSSSCCBHHHHHHHTTE-ECCC----CEETTTTEECCEEEEEEEEECCSSEEEEEECBCCCCSSSSCCBC
T ss_pred eccCceEEeecCCCcccHHHHHHHhcc-ccee----ecchhhCCccceeeeeeHhhCCCceEEEEEEEEEecccCceecc
Confidence 37899999999875 589999999997 4454 89999999999999999999999999999999999877888999
Q ss_pred cceeecccccccccccCCC-------------------------------------------------CCCCceeEEEEE
Q 003922 80 TSPFCFPGELNMQRRLSEP-------------------------------------------------SQLDLIYDLSAV 110 (786)
Q Consensus 80 ~~~V~fP~~Ldl~~~~~~~-------------------------------------------------~~~~~~Y~L~aV 110 (786)
++.|.||..|||.+|+... ......|+|+||
T Consensus 254 ~~~v~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~L~av 333 (404)
T 2ayn_A 254 LKDVKFPLMLDMYELCTPELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQKEVKYEPFSFADDIGSNNCGYYDLQAV 333 (404)
T ss_dssp CCCCBCCSEEECGGGBCHHHHHHTTTTTGGGTCTTC----------------------CCCCCSCTTTTCCCSEEEEEEE
T ss_pred CceeccCceeEHhHhcChhhhhhcchhhhHHhhhhcccchhhhhhccccccccccccccccccccccCcCCCceEEEEEE
Confidence 9999999999999997531 012488999999
Q ss_pred EEeeccccCCceEEEEEEecCCCcEEEEcCCceeecCCC
Q 003922 111 LIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGHH 149 (786)
Q Consensus 111 I~H~G~s~~sGHY~a~vr~~~~~~W~~fnD~~Vt~v~~~ 149 (786)
|+|.|.++++|||+||+|+ .++.||+|||+.|++++.+
T Consensus 334 v~H~G~s~~~GHY~a~v~~-~~~~W~~fnD~~V~~v~~~ 371 (404)
T 2ayn_A 334 LTHQGRSSSSGHYVSWVKR-KQDEWIKFDDDKVSIVTPE 371 (404)
T ss_dssp EEEESSSTTSSEEEEEEEE-ETTEEEEEBTTBCCCBCHH
T ss_pred EEecCCCCCCCCeEEEEEC-CCCeEEEeecccceecCHH
Confidence 9999976799999999998 4789999999999999754
No 8
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=99.97 E-value=1.1e-31 Score=301.18 Aligned_cols=144 Identities=26% Similarity=0.433 Sum_probs=120.5
Q ss_pred CCcceEEEeeCCCC-CCHHHHHHhcccceEecCCCceecCCCCceeeEEEEEEEeecCCeeEEEEeeeEEeCCCCceecc
Q 003922 1 MEDFYELELNVKGL-KTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKKKI 79 (786)
Q Consensus 1 ~E~F~~LsL~i~~~-~sL~d~L~~f~~~E~L~gdn~y~Ce~C~~~~~a~k~~~i~~lP~vLiihLkRF~~d~~~~~~~Ki 79 (786)
.|+|++|+|+|++. .+|++||..|+.+ .++ |+|++|+.++.+.|+.+|.+||+||+|||+||.|+..++...|+
T Consensus 171 ~e~f~~Lsl~i~~~~~~l~~~L~~~~~e-~i~----~~c~~c~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki 245 (415)
T 1vjv_A 171 NESDSKLQCHISGTTNFMRNGLLEGLNE-KIE----KRSDLTGANSIYSVEKKISRLPKFLTVQYVRFFWKRSTNKKSKI 245 (415)
T ss_dssp CCEESCEEECCCTTCCBHHHHHHHHHEE-C-------------CCCCEEEEEEEEECBSEEEEEECCEEEETTTTEEEEC
T ss_pred cccceeeeeccccccchHHHHHHHHhhh-hhh----hcccccCCcccEEEEEEcccCCCeeEEEEEEEEEeCCCCcchhh
Confidence 48999999999875 5899999999974 344 89999999999999999999999999999999999888889999
Q ss_pred cceeecccccccccccCCC-------------------------------------------------------------
Q 003922 80 TSPFCFPGELNMQRRLSEP------------------------------------------------------------- 98 (786)
Q Consensus 80 ~~~V~fP~~Ldl~~~~~~~------------------------------------------------------------- 98 (786)
++.|.||..|||.+|+...
T Consensus 246 ~~~V~FP~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 325 (415)
T 1vjv_A 246 LRKVVFPFQLDVADMLTPEYAAEKVKVRDELRKVEKEKNEKEREIKRRKFDPSSSENVMTPREQYETQVALNESEKDQWL 325 (415)
T ss_dssp CCCCBCCSEEECGGGBCHHHHHHHHHHHHHHHHHHHHHHHC----------------CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccCCCcEeEhHHhcChhhhhhhhhhHHHHHHHhhhhhhhhhhhhhccccccccccccccchhhhhchhhHHhhhhhhh
Confidence 9999999999999997531
Q ss_pred --------------CCCCceeEEEEEEEeeccccCCceEEEEEEe-cCCCcEEEEcCCceeecCCC
Q 003922 99 --------------SQLDLIYDLSAVLIHKGTAVNSGHYIALIKD-ENTGQWWEFDDEHVSNLGHH 149 (786)
Q Consensus 99 --------------~~~~~~Y~L~aVI~H~G~s~~sGHY~a~vr~-~~~~~W~~fnD~~Vt~v~~~ 149 (786)
......|+|+|||+|.|.++++|||+||+|+ ..++.||+|||+.|+.++.+
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~s~~~GHY~a~vr~~~~~~~W~~fnD~~V~~v~~~ 391 (415)
T 1vjv_A 326 EEYKKHFPPNLEKGENPSCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVEKE 391 (415)
T ss_dssp HHHHTTSCTTCCTTBCSSSEEEEEEEEEEESSSTTSSEEEEEEECSSCTTCEEEEETTEEEEECHH
T ss_pred hhcccccccccccccCCCceEEEEEEEEecCCCCCCCCEEEEEeCCCCCCcEEEeECCcCeEcCHH
Confidence 0124789999999999965799999999998 56899999999999999754
No 9
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=99.97 E-value=1.9e-31 Score=304.53 Aligned_cols=144 Identities=39% Similarity=0.678 Sum_probs=131.5
Q ss_pred CCcceEEEeeCCCCCCHHHHHHhcccceEecCCCceecCCCCceeeEEEEEEEeecCCeeEEEEeeeEEeCCCCceeccc
Q 003922 1 MEDFYELELNVKGLKTLDESLDDYLSVEELHGDNQYFCDSCGTRVDATRSIKLRSLPDVLNFQLKRCVFLPKTTMKKKIT 80 (786)
Q Consensus 1 ~E~F~~LsL~i~~~~sL~d~L~~f~~~E~L~gdn~y~Ce~C~~~~~a~k~~~i~~lP~vLiihLkRF~~d~~~~~~~Ki~ 80 (786)
+|+|++|+|+|++..+|++||+.|+.+|.++|.+ |+|++|+.++.+.|+..|.+||+||+|||+||.|+. ++...|++
T Consensus 305 ~e~f~~LsL~i~~~~sl~~~L~~~~~~E~l~~~~-~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~-~~~~~K~~ 382 (476)
T 3mhs_A 305 IDPFLDLSLDIKDKKKLYECLDSFHKKEQLKDFN-YHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLL-NGSNRKLD 382 (476)
T ss_dssp EEEESCEEECCTTCCBHHHHHHHHHCCEECSSCC-CEETTTTEECCCEEEEEEEEBCSEEEEEECCEEECT-TSCEEECC
T ss_pred ccchhhhccchhhhhHHHHHHHHhcChhhccCCC-CcCCccCCcccEEEEEEcccCCcceEEEeeeccccC-CCCeEECC
Confidence 3789999999999999999999999999999765 999999999999999999999999999999999975 46788999
Q ss_pred ceeecccccccccccCCCCC---------CCceeEEEEEEEeeccccCCceEEEEEEecCCCcEEEEcCCceeecCC
Q 003922 81 SPFCFPGELNMQRRLSEPSQ---------LDLIYDLSAVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLGH 148 (786)
Q Consensus 81 ~~V~fP~~Ldl~~~~~~~~~---------~~~~Y~L~aVI~H~G~s~~sGHY~a~vr~~~~~~W~~fnD~~Vt~v~~ 148 (786)
+.|.||..|||.+|+..... ....|+|+|||+|.|+ +++|||+||+|. .+++||+|||+.|++++.
T Consensus 383 ~~V~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~avv~H~G~-~~~GHY~a~vr~-~~~~W~~fnD~~V~~v~~ 457 (476)
T 3mhs_A 383 DFIEFPTYLNMKNYCSTKEKDKHSENGKVPDIIYELIGIVSHKGT-VNEGHYIAFCKI-SGGQWFKFNDSMVSSISQ 457 (476)
T ss_dssp CCCBCCSEEECGGGBSCCBCCC--CCCBCCCEEEEEEEEEEEEEC-SSSEEEEEEEEC-TTSCEEEEETTEEEEECH
T ss_pred EEEcCCCeeechhhcCcccccccccccCCCCCcEEEEEEEEeCCC-CCCCceEEEEEC-CCCcEEEEeCCceEECCH
Confidence 99999999999999876432 2578999999999998 699999999997 478999999999999963
No 10
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=99.96 E-value=9e-29 Score=299.43 Aligned_cols=92 Identities=21% Similarity=0.316 Sum_probs=85.2
Q ss_pred CCcceEEEeeCCCC--------------------------------CCHHHHHHhcccceEecCCCceecCCCCceeeEE
Q 003922 1 MEDFYELELNVKGL--------------------------------KTLDESLDDYLSVEELHGDNQYFCDSCGTRVDAT 48 (786)
Q Consensus 1 ~E~F~~LsL~i~~~--------------------------------~sL~d~L~~f~~~E~L~gdn~y~Ce~C~~~~~a~ 48 (786)
.|+|++|+|+|+.. .+|++||+.|+.+|.|+| |+|++|+.++.|.
T Consensus 500 ~e~F~~LsL~Ip~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~sL~dcL~~f~~~E~Le~---y~C~~C~~k~~a~ 576 (854)
T 3ihp_A 500 QRVDYIMQLPVPMDAALNKEELLEYEEKKRQAEEEKMALPELVRAQVPFSSCLEAYGAPEQVDD---FWSTALQAKSVAV 576 (854)
T ss_dssp EEEESEEEECCCGGGCTTHHHHHHHHHHHHHHHHTTCCCCCCCCEECCHHHHHHHHHSCEEEEE---EEETTTTEEEEEE
T ss_pred eeeceEEEeeCCccccccccchhhhcccccccccccccccccccCCCCHHHHHHHhcCceEeee---eeccccCCcceee
Confidence 37899999999852 499999999999999997 9999999999999
Q ss_pred EEEEEeecCCeeEEEEeeeEEeCCCCceecccceeecccccccccccC
Q 003922 49 RSIKLRSLPDVLNFQLKRCVFLPKTTMKKKITSPFCFPGELNMQRRLS 96 (786)
Q Consensus 49 k~~~i~~lP~vLiihLkRF~~d~~~~~~~Ki~~~V~fP~~Ldl~~~~~ 96 (786)
|++.|.+||+||+||||||.|+.. +...|+++.|.||..|||++|+.
T Consensus 577 K~~~i~~lP~vLiihLkRF~~d~~-~~~~Ki~~~V~FP~~LDl~~y~~ 623 (854)
T 3ihp_A 577 KTTRFASFPDYLVIQIKKFTFGLD-WVPKKLDVSIEMPEELDISQLRG 623 (854)
T ss_dssp EEEEESSCCSEEEEEECCEEECGG-GCEEECCEECCCCSEEECGGGBC
T ss_pred EEEEeeeCCceEEEEeehheecCC-CceEECCeEEecCCcEehHHhcc
Confidence 999999999999999999999765 77889999999999999999965
No 11
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=99.08 E-value=2.1e-09 Score=110.10 Aligned_cols=100 Identities=15% Similarity=0.281 Sum_probs=70.8
Q ss_pred HHHHHHHHHHcCCCCCCCCCCeeEEEchhhHHHHHHhcCCCCC-----CCCCCCCcccccccccceeccccccccCCCcc
Q 003922 519 KERQNHEKLALGKSIPLSLDCKYYLLPSTWLTKWRNYISPSGK-----NASSIEPEILDGVIDSLKCEKHLRLLERPPDL 593 (786)
Q Consensus 519 ~~r~~~~~l~~~k~~~~~~~~~~y~vp~~wl~~Wr~fv~~~~~-----~~~~~~P~~id~~~~~l~C~~Hg~Ll~~p~~~ 593 (786)
+||+....+.. .++.+|..+|+||+.|+++|++||+.... ..+..+|+|||| +.|++ .|+.....|..
T Consensus 8 ~Q~~~i~~l~~---~~l~~Gd~~YlIs~~W~~~w~~~v~~~~~~~~~~~~~~~~pGpIdN--s~L~~-~~~~~~Lk~~l- 80 (217)
T 4a3p_A 8 TQRSDIATLLK---TSLRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQMGDQNVYPGPIDN--SGLLK-DGDAQSLKEHL- 80 (217)
T ss_dssp HHHHHHHHHTT---CCCCTTCEEEEEEHHHHHHHHHHHTCSTTCCTTTTCGGGCCCSBCC--GGGBC-CC---CBCSSC-
T ss_pred HHHHHHHHHHh---cCCCCCCEEEEEchHHHHHHHHHhcccccccccccccCCCCCcEeh--HHhhC-CCCCcccCcCc-
Confidence 45666666554 36788999999999999999999963311 101458999999 88888 55444334432
Q ss_pred ccccCcccccCCCCCCceeeCHHHHHHHHHHhC---CCcccceEEEE
Q 003922 594 VCKRGSIYQKGSATDGLTIVTENDWKWFCEEWG---GIKEKGLSVIV 637 (786)
Q Consensus 594 ~~~~g~~~q~~~~~~~~~~Is~~eW~~l~~~yg---~~~~~~i~~~~ 637 (786)
....++++|+++-|++|.+.|| |+|+|. |..+
T Consensus 81 -----------~e~~Dy~~vp~~vW~~l~~wYG~~~ggp~I~-R~vi 115 (217)
T 4a3p_A 81 -----------IDELDYILLPTEGWNKLVSWYTLMEGQEPIA-RKVV 115 (217)
T ss_dssp -----------CBTTTEEEEEHHHHHHHHHHHCBCTTCCCCE-EEEE
T ss_pred -----------ccCCCEEEECHHHHHHHHHHhCCCCCCCCcc-eeEE
Confidence 2234799999999999999999 878764 4444
No 12
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=99.04 E-value=2.5e-10 Score=123.73 Aligned_cols=78 Identities=26% Similarity=0.371 Sum_probs=64.3
Q ss_pred EeecCCeeEEEEeeeEEeCCCCceecccceeecccccccccccCCC---------------------------C------
Q 003922 53 LRSLPDVLNFQLKRCVFLPKTTMKKKITSPFCFPGELNMQRRLSEP---------------------------S------ 99 (786)
Q Consensus 53 i~~lP~vLiihLkRF~~d~~~~~~~Ki~~~V~fP~~Ldl~~~~~~~---------------------------~------ 99 (786)
|.+||++|+||+.|| +...||-.+|.||.+||+.+++.+. .
T Consensus 163 isrLP~yLtVq~vRF------gKkaKIlrkV~fp~eLDvtdl~tdelr~~~vr~kl~e~e~~~~~k~~k~~~~~~~~~~~ 236 (374)
T 2vhf_A 163 FAEAPSCLIIQMPRF------GKDFKLFKKIFPSLELNITDLLEDTPRQCRICGGLAMYECRECYDDPDISAGKIKQFCK 236 (374)
T ss_dssp ESSCCSEEEEECCCC------SSSSSCCCCCBCCSEECCGGGBSSSCCBCTTTSCBCCEECGGGTTCTTTTTTSCCEECH
T ss_pred eecCCcceEEeeecc------CccccccCCCCCcchhccHhhcCcchhhccHhHHHHHHHHHHHHhhhhccccccccccc
Confidence 999999999999999 4567999999999999998765321 0
Q ss_pred ---------------C--------------------CCceeEEEEEEEeeccccCCceEEEEEEe-cCCCcEEEEcCC
Q 003922 100 ---------------Q--------------------LDLIYDLSAVLIHKGTAVNSGHYIALIKD-ENTGQWWEFDDE 141 (786)
Q Consensus 100 ---------------~--------------------~~~~Y~L~aVI~H~G~s~~sGHY~a~vr~-~~~~~W~~fnD~ 141 (786)
. ....|+|+|||+ +++|||+||||. +.++.||.||-.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~psg~yeL~aVlt-----adsgHYvafVK~~~~d~~W~~FDsm 309 (374)
T 2vhf_A 237 TCNTQVHLHPKRLNHKYNPVSLPKDLPDWDWRHGCIPCQNMELFAVLC-----IETSHYVAFVKYGKDDSAWLFFDSM 309 (374)
T ss_dssp HHHHHHTTSGGGTTCCCEECCC----------------CCEEEEEEEE-----EETTEEEEEEECSSSTTCEEEEETT
T ss_pred hhhhhhhhhhhhhcccccccccCccccccccccCCCCceeEEEEEEEE-----ccCCceEEEEEecCCCCCeEEEech
Confidence 0 026899999999 599999999996 347899999854
No 13
>1w6v_A Ubiquitin carboxyl-terminal hydrolase 15; UCH, USP, DUB, deubiquitylation, deubiquitinating enzyme, ubiquitin specific protease; NMR {Homo sapiens} SCOP: d.324.1.1
Probab=98.99 E-value=1.1e-09 Score=104.44 Aligned_cols=84 Identities=20% Similarity=0.525 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCeEEEeHHHHHHHhhc---------------cCCCCCCCccccccCC--CCCCCCcc--
Q 003922 283 SERKQEVRSLLSEAPVPSLEEPFYWISSDWLRQWADK---------------IFPSTLDNTSIQCLHG--KVPESKIG-- 343 (786)
Q Consensus 283 ~e~rqev~~ll~~~~~~~~~~~~~~Is~~WL~~w~~~---------------~~P~pIdN~~llC~Hg--~l~p~k~~-- 343 (786)
++.++.|++++.. ....++..|.||..|+++|..+ ..||||||++|++..+ .|.|....
T Consensus 31 e~Qr~~I~~l~~~--~l~~gd~~YlIs~~W~~~W~~yv~~~~~~~~~~~~~~~~pGpIDNs~Ll~~~~~~~Lk~~L~e~~ 108 (141)
T 1w6v_A 31 DTQRSDIATLLKT--SLRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQMGDQNVYPGPIDNSGLLKDGDAQSLKEHLIDEL 108 (141)
T ss_dssp HHHHHHHHHHHSS--CCCTTCEEEEEEHHHHHHHHHHHTCSTTCCSSTTCSTTCCCSBCCTTTBCSSCTTCBCSSCCTTT
T ss_pred HHHHHHHHHHHHc--CCCCCCEEEEECHHHHHHHHHHhcCCccccccccccCCCCCCCcCHHHhCcCccccccccccCCC
Confidence 3445667777653 3345678999999999999964 2689999999999873 45554222
Q ss_pred ccccccHHHHHHHHHHcC---CCCCCCc
Q 003922 344 SMKRISSKAWNKFFFKYN---GGPALTN 368 (786)
Q Consensus 344 ~~krIs~~aw~~L~~~yg---GgP~l~~ 368 (786)
....||+++|++|+++|| |||++..
T Consensus 109 Dy~lVp~~vW~~L~~wYG~~~ggp~I~R 136 (141)
T 1w6v_A 109 DYILLPTEGWNKLVSWYTLMEGQEPIAR 136 (141)
T ss_dssp TEEEECHHHHHHHHHHSCBCTTCCCCEE
T ss_pred CEEEECHHHHHHHHHHHCCCCCCCceeE
Confidence 344699999999999999 8998753
No 14
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=98.92 E-value=1.2e-08 Score=105.49 Aligned_cols=95 Identities=16% Similarity=0.325 Sum_probs=66.3
Q ss_pred HHHHHHHHHHcCCCCCCCCCCeeEEEchhhHHHHHHhcCCCC-----CCCCCCCCcccccccccceeccccccccCCCcc
Q 003922 519 KERQNHEKLALGKSIPLSLDCKYYLLPSTWLTKWRNYISPSG-----KNASSIEPEILDGVIDSLKCEKHLRLLERPPDL 593 (786)
Q Consensus 519 ~~r~~~~~l~~~k~~~~~~~~~~y~vp~~wl~~Wr~fv~~~~-----~~~~~~~P~~id~~~~~l~C~~Hg~Ll~~p~~~ 593 (786)
+||+....+.. .++.+|..+|+||+.|+++|++|++... +..+..+|+|||| +.|++ .+++....|..
T Consensus 17 ~Qr~~i~~l~~---~~l~~Gd~~YlIs~~W~~~w~~~v~~~~~~~~~~~~~~~~pGPIDN--s~L~~-~~~~~~Lk~~l- 89 (231)
T 3jyu_A 17 TQKTELGALMG---TTLQRGAQWYLIDSRWFKQWKKYVGFDSWDMYNVGEHNLFPGPIDN--SGLFS-DPESQTLKEHL- 89 (231)
T ss_dssp HHHHHHHTTTT---CCCCTTCEEEEEEHHHHHHHHHHHTSSSCCTTTTTCGGGCCCSBCC--GGGEE-ETTTTEECSSC-
T ss_pred HHHHHHHHHHh---cCCCCCCEEEEEchHHHHHHHHHhcccccccccccccCCCCCcEeh--HHHhC-cCCCccccccc-
Confidence 34555555443 3677899999999999999999996321 1101458999999 88877 44322223322
Q ss_pred ccccCcccccCCCCCCceeeCHHHHHHHHHHhC---CCccc
Q 003922 594 VCKRGSIYQKGSATDGLTIVTENDWKWFCEEWG---GIKEK 631 (786)
Q Consensus 594 ~~~~g~~~q~~~~~~~~~~Is~~eW~~l~~~yg---~~~~~ 631 (786)
....++++|+++-|++|.+.|| |+++|
T Consensus 90 -----------~e~~Dy~~vp~~vW~~l~~wYG~~~gg~~I 119 (231)
T 3jyu_A 90 -----------IDELDYVLVPAEAWNKLLNWYGCVEGQQPI 119 (231)
T ss_dssp -----------CBTTTEEEEEHHHHHHHHHHHCBCTTCCCC
T ss_pred -----------ccCCCEEEECHHHHHHHHHHhCCCCCCCce
Confidence 2234799999999999999999 66764
No 15
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=98.91 E-value=1.9e-09 Score=110.39 Aligned_cols=84 Identities=20% Similarity=0.530 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCeEEEeHHHHHHHhhcc---------------CCCCCCCccccccC--CCCCCCCcc-
Q 003922 282 ISERKQEVRSLLSEAPVPSLEEPFYWISSDWLRQWADKI---------------FPSTLDNTSIQCLH--GKVPESKIG- 343 (786)
Q Consensus 282 ~~e~rqev~~ll~~~~~~~~~~~~~~Is~~WL~~w~~~~---------------~P~pIdN~~llC~H--g~l~p~k~~- 343 (786)
+++.++.|.+++.. ....++.+|.||+.||++|..+. .||||||++|++.| +.|.|....
T Consensus 6 l~~Q~~~i~~l~~~--~l~~Gd~~YlIs~~W~~~w~~~v~~~~~~~~~~~~~~~~pGpIdNs~L~~~~~~~~Lk~~l~e~ 83 (217)
T 4a3p_A 6 LDTQRSDIATLLKT--SLRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQMGDQNVYPGPIDNSGLLKDGDAQSLKEHLIDE 83 (217)
T ss_dssp HHHHHHHHHHHTTC--CCCTTCEEEEEEHHHHHHHHHHHTCSTTCCTTTTCGGGCCCSBCCGGGBCCC---CBCSSCCBT
T ss_pred HHHHHHHHHHHHhc--CCCCCCEEEEEchHHHHHHHHHhcccccccccccccCCCCCcEehHHhhCCCCCcccCcCcccC
Confidence 45566778888764 44567889999999999998642 68999999999986 456665322
Q ss_pred -ccccccHHHHHHHHHHcC---CCCCCC
Q 003922 344 -SMKRISSKAWNKFFFKYN---GGPALT 367 (786)
Q Consensus 344 -~~krIs~~aw~~L~~~yg---GgP~l~ 367 (786)
.+..||++||++|+++|| |||++.
T Consensus 84 ~Dy~~vp~~vW~~l~~wYG~~~ggp~I~ 111 (217)
T 4a3p_A 84 LDYILLPTEGWNKLVSWYTLMEGQEPIA 111 (217)
T ss_dssp TTEEEEEHHHHHHHHHHHCBCTTCCCCE
T ss_pred CCEEEECHHHHHHHHHHhCCCCCCCCcc
Confidence 456799999999999999 999875
No 16
>1w6v_A Ubiquitin carboxyl-terminal hydrolase 15; UCH, USP, DUB, deubiquitylation, deubiquitinating enzyme, ubiquitin specific protease; NMR {Homo sapiens} SCOP: d.324.1.1
Probab=98.81 E-value=1.9e-08 Score=96.02 Aligned_cols=82 Identities=15% Similarity=0.309 Sum_probs=59.3
Q ss_pred CCCCCCeeEEEchhhHHHHHHhcCCCCCCC-----CCCCCcccccccccceeccccccccCCCccccccCcccccCCCCC
Q 003922 534 PLSLDCKYYLLPSTWLTKWRNYISPSGKNA-----SSIEPEILDGVIDSLKCEKHLRLLERPPDLVCKRGSIYQKGSATD 608 (786)
Q Consensus 534 ~~~~~~~~y~vp~~wl~~Wr~fv~~~~~~~-----~~~~P~~id~~~~~l~C~~Hg~Ll~~p~~~~~~~g~~~q~~~~~~ 608 (786)
++.+|..+|+||+.|+++|++||....... +..+|+|||| +.|++ ..++....|.. ....
T Consensus 44 ~l~~gd~~YlIs~~W~~~W~~yv~~~~~~~~~~~~~~~~pGpIDN--s~Ll~-~~~~~~Lk~~L------------~e~~ 108 (141)
T 1w6v_A 44 SLRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQMGDQNVYPGPIDN--SGLLK-DGDAQSLKEHL------------IDEL 108 (141)
T ss_dssp CCCTTCEEEEEEHHHHHHHHHHHTCSTTCCSSTTCSTTCCCSBCC--TTTBC-SSCTTCBCSSC------------CTTT
T ss_pred CCCCCCEEEEECHHHHHHHHHHhcCCccccccccccCCCCCCCcC--HHHhC-cCccccccccc------------cCCC
Confidence 567899999999999999999996332110 0358999999 77877 44322222221 2334
Q ss_pred CceeeCHHHHHHHHHHhC---CCcc
Q 003922 609 GLTIVTENDWKWFCEEWG---GIKE 630 (786)
Q Consensus 609 ~~~~Is~~eW~~l~~~yg---~~~~ 630 (786)
.+++|+++.|++|.+.|| |+|+
T Consensus 109 Dy~lVp~~vW~~L~~wYG~~~ggp~ 133 (141)
T 1w6v_A 109 DYILLPTEGWNKLVSWYTLMEGQEP 133 (141)
T ss_dssp TEEEECHHHHHHHHHHSCBCTTCCC
T ss_pred CEEEECHHHHHHHHHHHCCCCCCCc
Confidence 799999999999999999 6665
No 17
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=98.76 E-value=6.7e-09 Score=107.24 Aligned_cols=85 Identities=25% Similarity=0.544 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCeEEEeHHHHHHHhhcc---------------CCCCCCCccccccC--CCCCCCCcc-
Q 003922 282 ISERKQEVRSLLSEAPVPSLEEPFYWISSDWLRQWADKI---------------FPSTLDNTSIQCLH--GKVPESKIG- 343 (786)
Q Consensus 282 ~~e~rqev~~ll~~~~~~~~~~~~~~Is~~WL~~w~~~~---------------~P~pIdN~~llC~H--g~l~p~k~~- 343 (786)
+++.++.|.+++.. ....++.+|.||+.|+++|..+. .||||||++|++.+ +.|.|....
T Consensus 15 l~~Qr~~i~~l~~~--~l~~Gd~~YlIs~~W~~~w~~~v~~~~~~~~~~~~~~~~pGPIDNs~L~~~~~~~~Lk~~l~e~ 92 (231)
T 3jyu_A 15 VETQKTELGALMGT--TLQRGAQWYLIDSRWFKQWKKYVGFDSWDMYNVGEHNLFPGPIDNSGLFSDPESQTLKEHLIDE 92 (231)
T ss_dssp HHHHHHHHHTTTTC--CCCTTCEEEEEEHHHHHHHHHHHTSSSCCTTTTTCGGGCCCSBCCGGGEEETTTTEECSSCCBT
T ss_pred HHHHHHHHHHHHhc--CCCCCCEEEEEchHHHHHHHHHhcccccccccccccCCCCCcEehHHHhCcCCCcccccccccC
Confidence 34556677777764 34567789999999999998653 48999999999977 345554322
Q ss_pred -ccccccHHHHHHHHHHcC---CCCCCCc
Q 003922 344 -SMKRISSKAWNKFFFKYN---GGPALTN 368 (786)
Q Consensus 344 -~~krIs~~aw~~L~~~yg---GgP~l~~ 368 (786)
....||+++|++|+++|| |||++..
T Consensus 93 ~Dy~~vp~~vW~~l~~wYG~~~gg~~I~R 121 (231)
T 3jyu_A 93 LDYVLVPAEAWNKLLNWYGCVEGQQPIVR 121 (231)
T ss_dssp TTEEEEEHHHHHHHHHHHCBCTTCCCCEE
T ss_pred CCEEEECHHHHHHHHHHhCCCCCCCceEE
Confidence 345699999999999999 8898753
No 18
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=91.26 E-value=0.21 Score=44.73 Aligned_cols=47 Identities=19% Similarity=0.178 Sum_probs=34.9
Q ss_pred CCCCCCCccccccccccC---CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 727 ESMFEPDRRASKRSRKTR---SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 727 ~~~~~~~~R~s~r~r~~~---~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
..++..++|-+-...-.. +.+.|.|..++||.+||.+|.+.+|++|.
T Consensus 16 ~~~~~~~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~ 65 (105)
T 4dbg_A 16 EVSPTQDIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPV 65 (105)
T ss_dssp ----CCCEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGG
T ss_pred CcCCCCcEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHH
Confidence 445555666655555543 67899999999999999999999999993
No 19
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=89.23 E-value=0.61 Score=41.33 Aligned_cols=29 Identities=21% Similarity=0.134 Sum_probs=27.0
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
..+.|.|..+.||.+||.+|.+.+||+|.
T Consensus 30 ~~~~lev~~~~TV~~lK~kI~~k~gip~~ 58 (100)
T 1wju_A 30 RKNLLETRLHITGRELRSKIAETFGLQEN 58 (100)
T ss_dssp SSEEEEEESSSBHHHHHHHHHHHTTCCST
T ss_pred cEEEEEeCCcCHHHHHHHHHHHHHCcCHH
Confidence 67889999999999999999999999983
No 20
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=87.85 E-value=0.44 Score=41.60 Aligned_cols=36 Identities=8% Similarity=0.043 Sum_probs=30.9
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccccccCceeeee
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCSTKVFGKHKMLY 783 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~~~~~~~~~~~ 783 (786)
..+.++|..++||.+||.+|+..||+++. .|++.+|
T Consensus 23 ~~~e~~l~~~~TV~~LK~~i~~~~gip~~---~q~L~~~ 58 (97)
T 1wjn_A 23 QILEKQLPDSMTVQKVKGLLSRLLKVPVS---ELLLSYE 58 (97)
T ss_dssp CCEEEEEETTSBHHHHHHHHHTTTTCCTT---TCEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHCCChh---HeEEEEE
Confidence 45677899999999999999999999996 7776554
No 21
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=87.01 E-value=0.6 Score=42.59 Aligned_cols=35 Identities=14% Similarity=0.214 Sum_probs=30.9
Q ss_pred cccccCCeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 739 RSRKTRSFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 739 r~r~~~~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
|.||.|..+.|.|..++||.+||-+|.+..||+|.
T Consensus 6 ~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~ 40 (118)
T 4ajy_B 6 MIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPD 40 (118)
T ss_dssp EEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGG
T ss_pred EEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHH
Confidence 45666678899999999999999999999999994
No 22
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=86.23 E-value=0.75 Score=37.41 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=26.3
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
..+.+.|+.++||.+||.+|.+.+|+++.
T Consensus 11 ~~~~i~v~~~~tv~~lK~~i~~~~~i~~~ 39 (76)
T 3a9j_A 11 KTITLEVEPSDTIENVKAKIQDKEGIPPD 39 (76)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCGG
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCcCHH
Confidence 45678999999999999999999999985
No 23
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=85.99 E-value=0.78 Score=37.28 Aligned_cols=29 Identities=10% Similarity=0.224 Sum_probs=26.4
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
..+.+.|+.++||.+||.+|.+..||++.
T Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~~i~~~ 39 (76)
T 1ndd_A 11 KEIEIDIEPTDKVERIKERVEEKEGIPPQ 39 (76)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCGG
T ss_pred CEEEEEECCCChHHHHHHHHHHHHCcChH
Confidence 45678999999999999999999999985
No 24
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.81 E-value=0.79 Score=40.58 Aligned_cols=33 Identities=9% Similarity=0.115 Sum_probs=29.1
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccccccCcee
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCSTKVFGKHK 780 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~~~~~~~~ 780 (786)
+.+.+.|..++||.+||.+|.+..||+|. .|.+
T Consensus 19 k~~~v~v~~~~TV~~LK~~I~~~tgIpp~---~QkL 51 (100)
T 2dzm_A 19 RNVDVVLEDTCTVGEIKQILENELQIPVS---KMLL 51 (100)
T ss_dssp CEEEEEEETTSBHHHHHHHHHHHHCCCTT---TCCE
T ss_pred eEEEEEECCCCcHHHHHHHHHHHHCCChh---HeEE
Confidence 67789999999999999999999999994 4554
No 25
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=85.57 E-value=0.78 Score=41.86 Aligned_cols=34 Identities=15% Similarity=0.236 Sum_probs=29.5
Q ss_pred ccccCCeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 740 SRKTRSFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 740 ~r~~~~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
.|+.+..+.|.|..++||.+||.+|-+..||++.
T Consensus 7 ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~ 40 (118)
T 2fnj_B 7 IRRHKTTIFTDAKESSTVFELKRIVEGILKRPPE 40 (118)
T ss_dssp EEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGG
T ss_pred EecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHH
Confidence 3455556889999999999999999999999994
No 26
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=85.55 E-value=0.87 Score=39.84 Aligned_cols=34 Identities=18% Similarity=0.188 Sum_probs=28.8
Q ss_pred eEEEEecccccHHHHHHHHHHHhCcccccccCceeee
Q 003922 746 FVNLKVSASTSIYQLKMMIWESLGLCSTKVFGKHKML 782 (786)
Q Consensus 746 ~~~l~vs~~~t~~~lK~~i~~~~~v~~~~~~~~~~~~ 782 (786)
.+.+.|+.++||.+||.+|.+..||+|. .|...+
T Consensus 29 ~~~~~v~~~~TV~~LK~kI~~~~GiP~~---~QrL~~ 62 (95)
T 2kjr_A 29 AFEVKLAKDLTVAQLKTKLEILTGGCAG---TMKVQV 62 (95)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHHCSCTT---TEEEEE
T ss_pred EEEEEeCccCHHHHHHHHHHHHHCcCHH---HeEEEE
Confidence 5678999999999999999999999995 554443
No 27
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=85.28 E-value=0.96 Score=37.74 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=26.7
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
..+.+.|+.++||.+||.+|.+.+||++.
T Consensus 14 ~~~~~~v~~~~tV~~lK~~i~~~~~i~~~ 42 (85)
T 3mtn_B 14 KTITLEVEPSDTIENVKAKIQDKEGIPPD 42 (85)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHHCCCGG
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHCcChH
Confidence 45688999999999999999999999996
No 28
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=85.18 E-value=0.87 Score=38.39 Aligned_cols=29 Identities=10% Similarity=0.224 Sum_probs=26.7
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
..+.+.|+.++||.+||.+|.+..||++.
T Consensus 23 ~~~~~~v~~~~tV~~lK~~i~~~~gip~~ 51 (88)
T 3dbh_I 23 KEIEIDIEPTDKVERIKERVEEKEGIPPQ 51 (88)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHHCCCGG
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHCcCHH
Confidence 55688999999999999999999999985
No 29
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=85.04 E-value=1.3 Score=37.35 Aligned_cols=29 Identities=21% Similarity=0.193 Sum_probs=26.4
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
..+.+.|+.++||.+||.+|.+..||++.
T Consensus 18 ~~~~~~v~~~~tV~~lK~~i~~~~gi~~~ 46 (87)
T 1wh3_A 18 GSYAYAINPNSFILGLKQQIEDQQGLPKK 46 (87)
T ss_dssp EEEEEEECSSSBHHHHHHHHHHHTCCCTT
T ss_pred CEEEEEeCCCChHHHHHHHHHHHhCCChH
Confidence 45678999999999999999999999985
No 30
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=84.90 E-value=0.91 Score=37.93 Aligned_cols=29 Identities=24% Similarity=0.273 Sum_probs=26.7
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
..+.+.|+.++||.+||.+|.+.+||++.
T Consensus 14 ~~~~~~v~~~~tV~~lK~~i~~~~~ip~~ 42 (85)
T 3n3k_B 14 RTIILEVEPSDTIENVKAKIQDKEGIPPD 42 (85)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCGG
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCCCHH
Confidence 45788999999999999999999999995
No 31
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=84.60 E-value=0.99 Score=39.67 Aligned_cols=28 Identities=18% Similarity=0.345 Sum_probs=26.1
Q ss_pred eEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 746 FVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 746 ~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
...+.|+.++||.+||.+|.+.+||+|.
T Consensus 28 ~~e~~v~~~~TV~~LK~kIe~~~Gip~~ 55 (97)
T 2kj6_A 28 SADARFSPQMSVEAVKEKLWKKCGTSVN 55 (97)
T ss_dssp CEEEEECTTCCHHHHHHHHHHHHCCCTT
T ss_pred EEEEEeCCCChHHHHHHHHHHHHCcCHH
Confidence 4678999999999999999999999995
No 32
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=84.44 E-value=1.1 Score=39.09 Aligned_cols=29 Identities=17% Similarity=0.177 Sum_probs=27.3
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
+.+.++|..++||.+||.+|-+..|++|.
T Consensus 32 kk~~v~v~p~DTI~~LK~~I~~k~Gip~~ 60 (93)
T 3plu_A 32 KKVRVKCLGEDSVGDFKKVLSLQIGTQPN 60 (93)
T ss_dssp CEEEEEEETTSBHHHHHHHHHHHHTCCGG
T ss_pred CEEEEEECCcCHHHHHHHHHHHHhCCCHH
Confidence 67889999999999999999999999993
No 33
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=83.89 E-value=1.3 Score=36.69 Aligned_cols=29 Identities=14% Similarity=0.124 Sum_probs=26.6
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
..+.+.|+.++||.+||.+|.+..||++.
T Consensus 15 ~~~~~~v~~~~tV~~lK~~i~~~~gip~~ 43 (79)
T 3phx_B 15 RSSTYEVRLTQTVAHLKQQVSGLEGVQDD 43 (79)
T ss_dssp CEEEEEECTTSBHHHHHHHHHHHHTCCGG
T ss_pred CEEEEEECCcChHHHHHHHHHhhcCCCHH
Confidence 45678999999999999999999999995
No 34
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=83.82 E-value=0.95 Score=40.32 Aligned_cols=34 Identities=18% Similarity=0.246 Sum_probs=28.5
Q ss_pred CCeEEEEec-ccccHHHHHHHHHHHhCcccccccCcee
Q 003922 744 RSFVNLKVS-ASTSIYQLKMMIWESLGLCSTKVFGKHK 780 (786)
Q Consensus 744 ~~~~~l~vs-~~~t~~~lK~~i~~~~~v~~~~~~~~~~ 780 (786)
.+...+.|. .++||.+||-+|.+.+||++. .|.+
T Consensus 16 ~G~~~v~v~~~~~Tv~~LK~kI~~~~gip~~---~QrL 50 (107)
T 1wf9_A 16 DGLERVSVDGPHITVSQLKTLIQDQLQIPIH---NQTL 50 (107)
T ss_dssp SCEEEEEECCTTSBHHHHHHHHHHHSCCCTT---TCCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHhCcCcc---cCEE
Confidence 355578899 999999999999999999985 5554
No 35
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.73 E-value=1.3 Score=36.65 Aligned_cols=29 Identities=21% Similarity=0.231 Sum_probs=26.2
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
....+.|+.++||.+||.+|.+..||++.
T Consensus 18 ~~~~~~v~~~~tV~~LK~~i~~~~~i~~~ 46 (81)
T 2dzi_A 18 RECSLQVPEDELVSTLKQLVSEKLNVPVR 46 (81)
T ss_dssp CEEEEEECSSCBHHHHHHHHHHHTCCCTT
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCcCHH
Confidence 45678999999999999999999999985
No 36
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=83.24 E-value=1.2 Score=36.40 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=26.2
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
....+.|+.++||.+||.+|.+..||++.
T Consensus 14 ~~~~~~v~~~~tV~~LK~~i~~~~~i~~~ 42 (77)
T 2bwf_A 14 DKWEVNVAPESTVLQFKEAINKANGIPVA 42 (77)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHCCCGG
T ss_pred EEEEEEECCCCcHHHHHHHHHHHhCCCHH
Confidence 35678999999999999999999999985
No 37
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=82.96 E-value=1.4 Score=37.53 Aligned_cols=29 Identities=21% Similarity=0.166 Sum_probs=26.5
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
..+.+.|+.++||.+||.+|.+.+||++.
T Consensus 16 ~~~~~~v~~~~tV~~lK~~i~~~~gip~~ 44 (90)
T 4dwf_A 16 QTRTFIVGAQMNVKEFKEHIAASVSIPSE 44 (90)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHTCCGG
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCCHH
Confidence 55678999999999999999999999985
No 38
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=82.96 E-value=1.2 Score=37.88 Aligned_cols=29 Identities=21% Similarity=0.259 Sum_probs=26.6
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
..+.+.|+.++||.+||.+|.+..||++.
T Consensus 20 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~ 48 (88)
T 1sif_A 20 KTFTVEMEPSDTIENLKAKIQDKEGIPPD 48 (88)
T ss_dssp CEEEEECCTTSBHHHHHHHHHHHHCCCGG
T ss_pred CEEEEEECCCChHHHHHHHHHHHHCcChh
Confidence 55678999999999999999999999985
No 39
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=82.60 E-value=1.4 Score=37.20 Aligned_cols=29 Identities=21% Similarity=0.166 Sum_probs=26.5
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
....+.|+.++||.+||.+|.+..||++.
T Consensus 28 ~~~~~~v~~~~tV~~lK~~i~~~~gip~~ 56 (88)
T 4eew_A 28 QTRTFIVGAQMNVKEFKEHIAASVSIPSE 56 (88)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHTCCGG
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCCHH
Confidence 45678999999999999999999999995
No 40
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=82.48 E-value=1.4 Score=37.60 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=26.8
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
..+.+.|+.++||.+||.+|.+..||++.
T Consensus 28 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~ 56 (91)
T 3v6c_B 28 THITLEVEPSDTIENVKAKIQDKEGIPPD 56 (91)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHHCCCGG
T ss_pred CEEEEEECCCCCHHHHHHHHHhhhCCChh
Confidence 56788999999999999999999999995
No 41
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=82.19 E-value=1.3 Score=38.24 Aligned_cols=29 Identities=10% Similarity=0.111 Sum_probs=26.7
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
..+.+.|..++||.+||.+|.+..||++.
T Consensus 27 ~~~~~~v~~~~TV~~LK~~I~~~~gip~~ 55 (96)
T 1wx8_A 27 DCHEFFLAENSNVRRFKKQISKYLHCNAD 55 (96)
T ss_dssp SEEEEEEETTCCHHHHHHHHHHHTCSCTT
T ss_pred eEEEEEECCCCCHHHHHHHHHHHhCCCHH
Confidence 56788999999999999999999999985
No 42
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=82.08 E-value=1.3 Score=38.01 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=26.6
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
..+.+.|+.++||.+||.+|.+.+||++.
T Consensus 12 ~~~~~~v~~~~TV~~LK~~i~~~~gip~~ 40 (96)
T 3k9o_B 12 KTITLEVEPSDTIENVKAKIQDKEGIPPD 40 (96)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCGG
T ss_pred CEEEEEECCCCCHHHHHHHHHhhhCCChh
Confidence 45678999999999999999999999985
No 43
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=81.54 E-value=1.7 Score=36.92 Aligned_cols=29 Identities=21% Similarity=0.140 Sum_probs=26.6
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
....+.|+.++||.+||.+|.+..||++.
T Consensus 21 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~ 49 (84)
T 2kk8_A 21 SSFELEVDYRDTLLVVKQKIERSQHIPVS 49 (84)
T ss_dssp CEEEEEECTTSBHHHHHHHHHHHHTCCGG
T ss_pred cEEEEEECCCChHHHHHHHHHHHHCcChH
Confidence 55678999999999999999999999985
No 44
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=81.00 E-value=1.9 Score=36.47 Aligned_cols=33 Identities=15% Similarity=0.306 Sum_probs=28.0
Q ss_pred CeEEE-EecccccHHHHHHHHHHHhCcccccccCcee
Q 003922 745 SFVNL-KVSASTSIYQLKMMIWESLGLCSTKVFGKHK 780 (786)
Q Consensus 745 ~~~~l-~vs~~~t~~~lK~~i~~~~~v~~~~~~~~~~ 780 (786)
..+.+ .|+.++||.+||.+|.+..||++. .|.+
T Consensus 19 ~~~~l~~v~~~~tV~~lK~~i~~~~gip~~---~qrL 52 (89)
T 1wy8_A 19 KTCTIEDVSRKATIEELRERVWALFDVRPE---CQRL 52 (89)
T ss_dssp CEEEEEEECTTCBHHHHHHHHHHHSCCCTT---TEEE
T ss_pred ceEEEEecCCCCCHHHHHHHHHHHHCcChh---hEEE
Confidence 35788 499999999999999999999985 5544
No 45
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=81.00 E-value=1.6 Score=37.24 Aligned_cols=29 Identities=10% Similarity=0.224 Sum_probs=26.6
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
..+.+.|+.++||.+||.+|.+..||++.
T Consensus 11 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~ 39 (88)
T 4fbj_B 11 KEIEIDIEPTDKVERIKERVEEKEGIPPQ 39 (88)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCGG
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHCcChh
Confidence 45688999999999999999999999985
No 46
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=80.95 E-value=2.1 Score=35.21 Aligned_cols=26 Identities=19% Similarity=0.180 Sum_probs=24.6
Q ss_pred EEE-ecccccHHHHHHHHHHHhCcccc
Q 003922 748 NLK-VSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 748 ~l~-vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
.+. |+.++||.+||.+|.+..||++.
T Consensus 17 ~l~~v~~~~tv~~lK~~i~~~~gip~~ 43 (78)
T 2faz_A 17 TVDSLSRLTKVEELRRKIQELFHVEPG 43 (78)
T ss_dssp EEEEECTTCBHHHHHHHHHHHHCCCGG
T ss_pred EEeccCCCCCHHHHHHHHHHHHCcChh
Confidence 788 99999999999999999999985
No 47
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=80.94 E-value=1.3 Score=37.96 Aligned_cols=27 Identities=7% Similarity=0.107 Sum_probs=25.0
Q ss_pred EEEEecccccHHHHHHHHHHHhCcccc
Q 003922 747 VNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 747 ~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
..++|+.++||.+||.+|.+.+||+|.
T Consensus 17 ~E~r~~~s~TI~~lK~ki~~~~Gip~~ 43 (86)
T 4b6w_A 17 PEKRYGLAQTIESIKENVFTHFATPPE 43 (86)
T ss_dssp EEEEEETTSBHHHHHHHHHTTSCCCGG
T ss_pred EEEEcCccCcHHHHHHHHHHHHCCCHH
Confidence 467899999999999999999999995
No 48
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=80.73 E-value=1.7 Score=37.03 Aligned_cols=29 Identities=14% Similarity=0.124 Sum_probs=26.5
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
..+.+.|+.++||.+||.+|.+..||++.
T Consensus 15 ~~~~~~v~~~~TV~~LK~~I~~~~gip~~ 43 (88)
T 2hj8_A 15 RSSTYEVRLTQTVAHLKQQVSGLEGVQDD 43 (88)
T ss_dssp CEEEEEEESSSBHHHHHHHHHHHTCSCTT
T ss_pred CEEEEEECCCCcHHHHHHHHHHHhCCChh
Confidence 45678999999999999999999999985
No 49
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=80.18 E-value=1.8 Score=36.69 Aligned_cols=33 Identities=18% Similarity=0.221 Sum_probs=28.5
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccccccCcee
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCSTKVFGKHK 780 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~~~~~~~~ 780 (786)
....+.|+.++||.+||.+|.+..||++. .|.+
T Consensus 22 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~---~qrL 54 (85)
T 2kd0_A 22 KSIPLSVSPDCTVKDLKSQLQPITNVLPR---GQKL 54 (85)
T ss_dssp EEEEEEECTTSBHHHHHHHHHHHHCCCTT---TCEE
T ss_pred EEEEEEECCCCcHHHHHHHHHHHHCcChH---HEEE
Confidence 45678999999999999999999999985 5544
No 50
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=79.94 E-value=1.9 Score=38.51 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=26.6
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
..+.+.|+.++||.+||.+|.+..||++.
T Consensus 46 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~ 74 (111)
T 3vdz_A 46 KTITLEVEPSDTIENVKAKIQDKEGIPPD 74 (111)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHHCCCGG
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHhCCChH
Confidence 45678999999999999999999999985
No 51
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=79.70 E-value=2.2 Score=36.99 Aligned_cols=29 Identities=14% Similarity=0.031 Sum_probs=26.6
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
+...+.|+.++||.+||.+|.+..||++.
T Consensus 25 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~ 53 (94)
T 2kan_A 25 KQFTVEVDRTETVSSLKDKIHIVENTPIK 53 (94)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHSSSCTT
T ss_pred cEEEEEECCCCcHHHHHHHHHHHHCcCHH
Confidence 46788999999999999999999999985
No 52
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=79.65 E-value=1.8 Score=37.46 Aligned_cols=34 Identities=18% Similarity=0.042 Sum_probs=28.9
Q ss_pred eEEEEecccccHHHHHHHHHHHhCcccccccCceeee
Q 003922 746 FVNLKVSASTSIYQLKMMIWESLGLCSTKVFGKHKML 782 (786)
Q Consensus 746 ~~~l~vs~~~t~~~lK~~i~~~~~v~~~~~~~~~~~~ 782 (786)
...+.|+.++||.+||.+|.+..||++. .|.+.+
T Consensus 20 ~~~~~v~~~~TV~~lK~ki~~~~gip~~---~qrL~~ 53 (95)
T 1v6e_A 20 RSEKRYSRSLTIAEFKCKLELVVGSPAS---CMELEL 53 (95)
T ss_dssp CEEEEECTTSBHHHHHHHHHHHTCSCTT---TCBCEE
T ss_pred eEEEEcCccCHHHHHHHHHHHHHCCCHH---HeEEEE
Confidence 4678999999999999999999999995 555443
No 53
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=79.32 E-value=1.9 Score=37.40 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=26.3
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
..+.+.|+.++||.+||.+|.+..||++.
T Consensus 11 ~~~~~~v~~~~TV~~LK~~I~~~~gi~~~ 39 (98)
T 1yx5_B 11 KTITLEVEPSDTIENVKAKIQDKEGIPPD 39 (98)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHTCCCGG
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCcChh
Confidence 35678999999999999999999999985
No 54
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=78.76 E-value=2 Score=37.38 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=26.8
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
..+.+.|+.++||.+||.+|.+.+||++.
T Consensus 33 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~ 61 (98)
T 4hcn_B 33 KTITLEVESSDTIDNVKSKIQDKEGIPPD 61 (98)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCGG
T ss_pred CEEEEEECCCCcHHHHHHHHHHHhCCChh
Confidence 56788999999999999999999999985
No 55
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=78.70 E-value=2.1 Score=37.52 Aligned_cols=33 Identities=9% Similarity=0.141 Sum_probs=28.5
Q ss_pred eEEEEecccccHHHHHHHHHHHhCcccccccCceee
Q 003922 746 FVNLKVSASTSIYQLKMMIWESLGLCSTKVFGKHKM 781 (786)
Q Consensus 746 ~~~l~vs~~~t~~~lK~~i~~~~~v~~~~~~~~~~~ 781 (786)
.+.+.|+.++||.+||.+|.+..||++. .|+++
T Consensus 23 ~~~i~v~~~~TV~~LK~~I~~~~gip~~---~qrL~ 55 (102)
T 1v5o_A 23 TFSLQVNPDFELSNFRVLCELESGVPAE---EAQIV 55 (102)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTCCCGG---GBCEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHCcChH---HeEEE
Confidence 5568999999999999999999999986 56554
No 56
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=78.53 E-value=2.2 Score=38.08 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=26.4
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
..+.+.|+.++||.+||.+|.+..||++.
T Consensus 46 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~ 74 (111)
T 2ojr_A 46 KTITLEVEPSDTIENVKAKIQDKEGIPPD 74 (111)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHHCCCTT
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHCcCcc
Confidence 45678999999999999999999999985
No 57
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=78.29 E-value=2.1 Score=38.16 Aligned_cols=34 Identities=18% Similarity=0.235 Sum_probs=28.6
Q ss_pred CeEEEEecc-cccHHHHHHHHHHHhCcccccccCceee
Q 003922 745 SFVNLKVSA-STSIYQLKMMIWESLGLCSTKVFGKHKM 781 (786)
Q Consensus 745 ~~~~l~vs~-~~t~~~lK~~i~~~~~v~~~~~~~~~~~ 781 (786)
..+.+.|+. ++||.+||.+|.+..||++. .|.++
T Consensus 41 ~~~~l~v~~l~~TV~~LK~~I~~~~gip~~---~QrL~ 75 (111)
T 1we6_A 41 QFMEITVQSLSENVGSLKEKIAGEIQIPAN---KQKLS 75 (111)
T ss_dssp CCEEEEESCSSSBHHHHHHHHHHHTTCCTT---TSEEE
T ss_pred cEEEEEecCCCCcHHHHHHHHHHHHCCCHH---HeEEE
Confidence 346789998 99999999999999999985 55543
No 58
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=78.21 E-value=2.2 Score=36.72 Aligned_cols=29 Identities=14% Similarity=0.272 Sum_probs=26.6
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
+.+.+.|+.++||.+||.+|.+..||++.
T Consensus 28 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~ 56 (93)
T 2l7r_A 28 ELHTFEVTGQETVAQIKAHVASLEGIAPE 56 (93)
T ss_dssp SEEEEECCSSCBHHHHHHHHHHHHTCCGG
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHhCcChh
Confidence 45678999999999999999999999985
No 59
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=78.21 E-value=1.1 Score=37.79 Aligned_cols=40 Identities=8% Similarity=0.130 Sum_probs=31.0
Q ss_pred cccccCCeEEEEecccccHHHHHHHHHHHhCcccccccCceee
Q 003922 739 RSRKTRSFVNLKVSASTSIYQLKMMIWESLGLCSTKVFGKHKM 781 (786)
Q Consensus 739 r~r~~~~~~~l~vs~~~t~~~lK~~i~~~~~v~~~~~~~~~~~ 781 (786)
|.|-..|...+.|+.+.|+.+||-.|.+.|+|++. ++++.
T Consensus 8 Rvrs~~G~~Ri~v~~~~t~~~L~~~I~~~~~i~~~---~~~l~ 47 (80)
T 2pjh_A 8 RVQSPDGVKRITATKRETAATFLKKVAKEFGFQNN---GFSVY 47 (80)
T ss_dssp EEECSSEEEECCCCSSCCHHHHHHHHHHHTCCCTT---TCCCC
T ss_pred EEECCCCCEEEEcCCcChHHHHHHHHHHHcCCCCC---cceEE
Confidence 33433467778899999999999999999999863 55553
No 60
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=77.49 E-value=2.2 Score=38.37 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=26.6
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
..+.+.|+.++||.+||.+|.+..||++.
T Consensus 20 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~ 48 (114)
T 2kdi_A 20 KTITLEVESSDTIDNVKSKIQDKEGIPPD 48 (114)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCGG
T ss_pred cEEEEEECCCCcHHHHHHHHHHHHCcChH
Confidence 55678999999999999999999999985
No 61
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=77.15 E-value=3.6 Score=36.20 Aligned_cols=32 Identities=19% Similarity=0.088 Sum_probs=27.6
Q ss_pred eEEEEecccccHHHHHHHHHHHhCcccccccCcee
Q 003922 746 FVNLKVSASTSIYQLKMMIWESLGLCSTKVFGKHK 780 (786)
Q Consensus 746 ~~~l~vs~~~t~~~lK~~i~~~~~v~~~~~~~~~~ 780 (786)
...+.|..++||.+||.+|.+.+||++. .|.+
T Consensus 28 ~~~l~v~~~~TV~~LK~~I~~~~gip~~---~qrL 59 (106)
T 1wx7_A 28 KEDFSVTDTCTIQQLKEEISQRFKAHPD---QLVL 59 (106)
T ss_dssp EEEEEEETTCCHHHHHHHHHHHHTCCTT---TEEE
T ss_pred cEEEEECCCCcHHHHHHHHHHHHCcChh---hEEE
Confidence 3578999999999999999999999985 5544
No 62
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=77.02 E-value=2 Score=37.28 Aligned_cols=34 Identities=24% Similarity=0.194 Sum_probs=29.3
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccccccCceee
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCSTKVFGKHKM 781 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~~~~~~~~~ 781 (786)
....+.|+.++||.+||.+|.+..||++. .|.++
T Consensus 27 ~~~~i~v~~~~TV~~LK~~I~~~tgip~~---~QrL~ 60 (95)
T 1v86_A 27 TKHDVKVPLDSTGSELKQKIHSITGLPPA---MQKVM 60 (95)
T ss_dssp EEEEEEECTTSBHHHHHHHHHHHHCSCST---TCCCB
T ss_pred EEEEEEECCCCcHHHHHHHHHHHHCcCHH---HeEEE
Confidence 45678999999999999999999999985 55554
No 63
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=76.74 E-value=2.7 Score=36.90 Aligned_cols=29 Identities=17% Similarity=0.139 Sum_probs=26.5
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
+...+.|+.++||.+||.+|.+..||++.
T Consensus 35 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~ 63 (101)
T 2klc_A 35 EKEEFAVPENSSVQQFKEEISKRFKSHTD 63 (101)
T ss_dssp CEEEEEECSCCCHHHHHHHHHHHHTCCGG
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHCcChh
Confidence 45688999999999999999999999985
No 64
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=76.34 E-value=3 Score=36.54 Aligned_cols=28 Identities=21% Similarity=0.185 Sum_probs=25.7
Q ss_pred eEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 746 FVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 746 ~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
...+.|+.++||.+||.+|.+..||++.
T Consensus 33 ~~~l~v~~~~TV~~LK~~I~~~~gip~~ 60 (100)
T 1yqb_A 33 KEDFSVTDTCTIQQLKEEISQRFKAHPD 60 (100)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHHTCCGG
T ss_pred cEEEEECCCCcHHHHHHHHHHHHCcChh
Confidence 3578999999999999999999999985
No 65
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=74.94 E-value=2.1 Score=36.30 Aligned_cols=35 Identities=17% Similarity=0.203 Sum_probs=28.3
Q ss_pred CeEEEE-ecccccHHHHHHHHHHHhCcccccccCceeee
Q 003922 745 SFVNLK-VSASTSIYQLKMMIWESLGLCSTKVFGKHKML 782 (786)
Q Consensus 745 ~~~~l~-vs~~~t~~~lK~~i~~~~~v~~~~~~~~~~~~ 782 (786)
+...+. |..++||.+||.+|.+..||++. .|+++.
T Consensus 10 G~~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~---~qrL~~ 45 (86)
T 2kzr_A 10 GTHLLQGLSSRTRLRELQGQIAAITGIAPG---SQRILV 45 (86)
T ss_dssp EEEEECSCCTTCBHHHHHHHHHHHTCCCTT---TCCCEE
T ss_pred CCEEeeecCCCCCHHHHHHHHHHHhCCCcc---ceEEEe
Confidence 444467 89999999999999999999874 666654
No 66
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=74.67 E-value=3.2 Score=34.16 Aligned_cols=29 Identities=24% Similarity=0.266 Sum_probs=26.7
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
..+.+.|+.++||.+||.+|-+..|+++.
T Consensus 14 ~~~~~~v~~~~tv~~lk~~i~~~~gi~~~ 42 (79)
T 2uyz_B 14 SEIHFKVKMTTHLKKLKESYCQRQGVPMN 42 (79)
T ss_dssp CEEEEEEETTSCTHHHHHHHHHHHTCCGG
T ss_pred CEEEEEECCCChHHHHHHHHHHHHCCCcc
Confidence 46789999999999999999999999985
No 67
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=74.26 E-value=2.7 Score=37.77 Aligned_cols=29 Identities=14% Similarity=0.211 Sum_probs=26.2
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
..+.+.|+.++||.+||.+|.+..||++.
T Consensus 46 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~ 74 (115)
T 1we7_A 46 QGLVFTLPLTDQVSVIKVKIHEATGMPAG 74 (115)
T ss_dssp EEEEEEECSCSBTHHHHHHHHHHSSCCTT
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHCCChH
Confidence 45678999999999999999999999985
No 68
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=74.25 E-value=2.6 Score=37.28 Aligned_cols=33 Identities=12% Similarity=0.242 Sum_probs=28.4
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccccccCcee
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCSTKVFGKHK 780 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~~~~~~~~ 780 (786)
..+.+.|+.++||.+||.+|.+..||++. .|.+
T Consensus 34 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~---~qrL 66 (106)
T 1ttn_A 34 KDLKLVVRSTDTVFHMKRRLHAAEGVEPG---SQRW 66 (106)
T ss_dssp EEEEEEECTTSHHHHHHHHHHHTTCCCST---TCEE
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHHCcCcc---cEEE
Confidence 45678999999999999999999999985 5544
No 69
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=73.33 E-value=3.5 Score=37.72 Aligned_cols=29 Identities=17% Similarity=0.141 Sum_probs=26.5
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
..+.+.|+.++||.+||.+|.+.+||++.
T Consensus 42 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~ 70 (125)
T 1j8c_A 42 EKEEFAVPENSSVQQFKEAISKRFKSQTD 70 (125)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCSCSS
T ss_pred eEEEEEECCCCcHHHHHHHHHHHHCcCcc
Confidence 45788999999999999999999999985
No 70
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=72.46 E-value=3.9 Score=36.13 Aligned_cols=29 Identities=24% Similarity=0.210 Sum_probs=26.6
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
+.+.|.|..++||.+||.+|-+..|+++.
T Consensus 39 k~i~lev~p~dTV~~lK~~Ia~k~Gip~~ 67 (100)
T 1uh6_A 39 KKVRVKCNTDDTIGDLKKLIAAQTGTRWN 67 (100)
T ss_dssp SCEEEEEETTSBHHHHHHHHHHHHCCCGG
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHhCCCHH
Confidence 55779999999999999999999999984
No 71
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=71.87 E-value=2.6 Score=36.03 Aligned_cols=34 Identities=12% Similarity=0.204 Sum_probs=28.9
Q ss_pred CeEEE-EecccccHHHHHHHHHHHhCcccccccCceee
Q 003922 745 SFVNL-KVSASTSIYQLKMMIWESLGLCSTKVFGKHKM 781 (786)
Q Consensus 745 ~~~~l-~vs~~~t~~~lK~~i~~~~~v~~~~~~~~~~~ 781 (786)
+...| .|..++||.+||.+|.+..||++. .|.++
T Consensus 17 ~~~~i~~v~~~~TV~~lK~~I~~~~gip~~---~QkLi 51 (90)
T 1v5t_A 17 QEYSVTTLSEDDTVLDLKQFLKTLTGVLPE---RQKLL 51 (90)
T ss_dssp EEEEECSCCSSSBHHHHHHHHHHHTCCCTT---TCEEE
T ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHCcCHH---HeEEE
Confidence 45567 889999999999999999999985 66655
No 72
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=71.74 E-value=4.5 Score=33.63 Aligned_cols=29 Identities=10% Similarity=0.078 Sum_probs=25.1
Q ss_pred CeEEEEecccccHHHHHHHHHHH---hCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWES---LGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~---~~v~~~ 773 (786)
....+.|+.++||.+||.+|.+. -||++.
T Consensus 16 ~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~ 47 (85)
T 2wyq_A 16 QTFKIRMEPDETVKVLKEKIEAEKGRDAFPVA 47 (85)
T ss_dssp CEEEEEECTTSBHHHHHHHHHHHHCTTTCCGG
T ss_pred CEEEEEECCCCCHHHHHHHHHhhccccCCCHH
Confidence 45678999999999999999998 578874
No 73
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=71.64 E-value=2 Score=38.36 Aligned_cols=29 Identities=17% Similarity=0.201 Sum_probs=26.8
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
..+.|.|..++||.+||.+|.+.+|++|.
T Consensus 18 ~~~~v~V~~~~TV~dLK~~I~~~~~i~~~ 46 (105)
T 1v2y_A 18 EVMPVVVVQNATVLDLKKAIQRYVQLKQE 46 (105)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCChHHHHHHHHHHHhCCCcc
Confidence 67789999999999999999999999884
No 74
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=71.56 E-value=4 Score=37.13 Aligned_cols=28 Identities=21% Similarity=0.127 Sum_probs=25.9
Q ss_pred eEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 746 FVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 746 ~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
...+.|+.++||.+||.+|.+..||+|.
T Consensus 19 ~~e~~v~~~~TV~~lK~ki~~~~Gip~~ 46 (122)
T 1t0y_A 19 PMEKKYPAGMSLNDLKKKLELVVGTTVD 46 (122)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHCCCTT
T ss_pred cEEEEeCCCCcHHHHHHHHHHHhCCCHH
Confidence 4678999999999999999999999995
No 75
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=71.26 E-value=2.9 Score=36.99 Aligned_cols=29 Identities=21% Similarity=0.226 Sum_probs=26.4
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
..+.+.|+.++||.+||.+|.+..||++.
T Consensus 12 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~ 40 (106)
T 3m62_B 12 EKVPLDLEPSNTILETKTKLAQSISCEES 40 (106)
T ss_dssp CEEEECCCTTSBHHHHHHHHHHTTTSCGG
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCCChh
Confidence 45678899999999999999999999985
No 76
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=71.05 E-value=4.1 Score=35.31 Aligned_cols=29 Identities=24% Similarity=0.266 Sum_probs=26.7
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
..+.|.|+.++||.+||-+|-+..||++.
T Consensus 32 ~~~~l~v~~~~tv~~lK~~i~~~~gip~~ 60 (97)
T 1wyw_B 32 SEIHFKVKMTTHLKKLKESYCQRQGVPMN 60 (97)
T ss_dssp CEEEEEEETTSCTHHHHHHHHHHHTCCGG
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCCChh
Confidence 45789999999999999999999999984
No 77
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=70.14 E-value=4.1 Score=34.85 Aligned_cols=28 Identities=14% Similarity=-0.031 Sum_probs=25.2
Q ss_pred eEEEEecccccHHHHHHHHHHHh--Ccccc
Q 003922 746 FVNLKVSASTSIYQLKMMIWESL--GLCST 773 (786)
Q Consensus 746 ~~~l~vs~~~t~~~lK~~i~~~~--~v~~~ 773 (786)
.+.+.|..++||.+||.+|.+.+ ||++.
T Consensus 21 ~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~ 50 (93)
T 1wgd_A 21 DLELSGDRGWSVGHLKAHLSRVYPERPRPE 50 (93)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHSTTCCCTT
T ss_pred EEEEecCCCCcHHHHHHHHHHHhcCCCChH
Confidence 56777889999999999999999 99985
No 78
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=69.72 E-value=4.1 Score=35.40 Aligned_cols=34 Identities=9% Similarity=0.173 Sum_probs=28.8
Q ss_pred CeE-EEEecccccHHHHHHHHHHHhCcccccccCceee
Q 003922 745 SFV-NLKVSASTSIYQLKMMIWESLGLCSTKVFGKHKM 781 (786)
Q Consensus 745 ~~~-~l~vs~~~t~~~lK~~i~~~~~v~~~~~~~~~~~ 781 (786)
+.. .|.|..++||.+||.+|.+..||++. .|.++
T Consensus 17 ~~~~~l~v~~~~TV~~lK~~I~~~tgip~~---~QkLi 51 (96)
T 1wgg_A 17 EKFEGVELNTDEPPMVFKAQLFALTGVQPA---RQKVM 51 (96)
T ss_dssp EEEEEEEEESSSCHHHHHHHHHHHTCCCTT---TSCCE
T ss_pred EEEEEEEECCCCcHHHHHHHHHHHHCcCHH---HeEEE
Confidence 455 58999999999999999999999985 56554
No 79
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=69.35 E-value=4.3 Score=40.02 Aligned_cols=34 Identities=21% Similarity=0.283 Sum_probs=29.1
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccccccCceee
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCSTKVFGKHKM 781 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~~~~~~~~~ 781 (786)
..+.|.|+.++||.+||.+|.+..||++. .|.++
T Consensus 116 kt~~l~V~~s~TV~~LK~kI~~~~gIp~~---~QrLi 149 (189)
T 3q3f_A 116 KTITLEVEPSDTIENVKAKIQDKEGIPPD---QQRLI 149 (189)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHHCCCGG---GCCEE
T ss_pred CEEEEEeCCCCcHHHHHHHHHhccCCCHH---HEEEE
Confidence 56788999999999999999999999996 55443
No 80
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=69.21 E-value=5.6 Score=33.87 Aligned_cols=33 Identities=15% Similarity=0.199 Sum_probs=27.4
Q ss_pred CeEEEEeccc-----ccHHHHHHHHHHHhCcccccccCcee
Q 003922 745 SFVNLKVSAS-----TSIYQLKMMIWESLGLCSTKVFGKHK 780 (786)
Q Consensus 745 ~~~~l~vs~~-----~t~~~lK~~i~~~~~v~~~~~~~~~~ 780 (786)
....+.|+.+ +||.+||.+|.+..||++. .|.+
T Consensus 17 ~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~---~qrL 54 (92)
T 1wxv_A 17 EKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQS---FQKL 54 (92)
T ss_dssp SEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTT---TCEE
T ss_pred EEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHH---HEEE
Confidence 4457789885 9999999999999999985 5554
No 81
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=68.53 E-value=4.3 Score=38.86 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=26.7
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
..+.+.|+.++||.+||.+|.+..||++.
T Consensus 31 ~~~~l~v~~~~tV~~lK~~I~~~~gip~~ 59 (172)
T 3u30_A 31 KTITLEVEPSDTIENVKAKIQDKEGIPPD 59 (172)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHCCCGG
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCcChH
Confidence 45788999999999999999999999995
No 82
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=67.33 E-value=2.6 Score=36.98 Aligned_cols=29 Identities=17% Similarity=0.232 Sum_probs=26.2
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
....+.|+.++||.+||.+|.+..||++.
T Consensus 38 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~ 66 (101)
T 3m63_B 38 DKWEVNVAPESTVLQFKEAINKANGIPVA 66 (101)
T ss_dssp CCCCBCCCTTSBHHHHHHHHHHHHSCCST
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHHCcChH
Confidence 45577899999999999999999999985
No 83
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=66.38 E-value=6.1 Score=33.98 Aligned_cols=29 Identities=10% Similarity=0.087 Sum_probs=25.2
Q ss_pred CeEEEEecccccHHHHHHHHHHH---hCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWES---LGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~---~~v~~~ 773 (786)
....+.|+.++||.+||.+|.+. -||++.
T Consensus 11 ~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~ 42 (95)
T 1uel_A 11 QTFKIDIDPEETVKALKEKIESEKGKDAFPVA 42 (95)
T ss_dssp CEEEEECCTTSBHHHHHHHHHHHHCTTTCCTT
T ss_pred CEEEEEECCCCHHHHHHHHHHhhcccCCCChh
Confidence 45678999999999999999999 478875
No 84
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=68.75 E-value=1.3 Score=36.16 Aligned_cols=28 Identities=29% Similarity=0.316 Sum_probs=25.5
Q ss_pred eEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 746 FVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 746 ~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
...+.|+.++||.+||.+|.+..||++.
T Consensus 12 ~~~~~v~~~~tV~~lK~~i~~~~gi~~~ 39 (76)
T 3b1l_X 12 GFPVEVDSDTSILQLKEVVAKQQGVPAD 39 (76)
Confidence 4568899999999999999999999985
No 85
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=62.99 E-value=1.5 Score=40.20 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=0.0
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
..+.+.|+.++||.+||.+|.+..||+|.
T Consensus 11 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~ 39 (128)
T 3u5e_m 11 KTITLEVESSDTIDNVKSKIQDKEGIPPD 39 (128)
T ss_dssp -----------------------------
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHhCcChH
Confidence 34678899999999999999999999995
No 86
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=62.85 E-value=7.3 Score=36.60 Aligned_cols=29 Identities=14% Similarity=0.124 Sum_probs=26.8
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
..+.+.|+.++||.+||.+|.+..|+++.
T Consensus 92 ~~~~~~v~~~~tV~~lK~~i~~~~gip~~ 120 (159)
T 3rt3_B 92 RSSTYEVRLTQTVAHLKQQVSGLEGVQDD 120 (159)
T ss_dssp CEEEEEECTTSBHHHHHHHHHHHHTCCGG
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHCCCHH
Confidence 56788999999999999999999999985
No 87
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=62.12 E-value=6.9 Score=34.26 Aligned_cols=28 Identities=21% Similarity=0.174 Sum_probs=23.6
Q ss_pred eEEEEecccccHHHHHHHH-HHHhCcccc
Q 003922 746 FVNLKVSASTSIYQLKMMI-WESLGLCST 773 (786)
Q Consensus 746 ~~~l~vs~~~t~~~lK~~i-~~~~~v~~~ 773 (786)
.+.+.|+.++||.+||-+| .+..|+++.
T Consensus 33 ~i~v~v~~~~TV~~lK~~I~~~~~gip~~ 61 (98)
T 4a20_A 33 SIEHDFSPSDTILQIKQHLISEEKASHIS 61 (98)
T ss_dssp EEEEEECTTCBHHHHHHHHHHTTSCSCGG
T ss_pred EEEEecCCCChHHHHHHHHHHHhcCCChh
Confidence 4566788999999999999 767798884
No 88
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=58.29 E-value=6.9 Score=36.77 Aligned_cols=29 Identities=24% Similarity=0.324 Sum_probs=26.4
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
..+.+.|+.++||.+||.+|.+.+||+|.
T Consensus 13 ~~~~l~v~~~~tV~~lK~~I~~~~gip~~ 41 (159)
T 3rt3_B 13 NEFQVSLSSSMSVSELKAQITQKIGVHAF 41 (159)
T ss_dssp CEEEEECCTTCCHHHHHHHHHHHHCCCGG
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHhCCCHH
Confidence 45678999999999999999999999984
No 89
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=58.00 E-value=9.8 Score=33.29 Aligned_cols=27 Identities=7% Similarity=-0.112 Sum_probs=23.4
Q ss_pred eEEEEecccccHHHHHHHHHHHh-Cccc
Q 003922 746 FVNLKVSASTSIYQLKMMIWESL-GLCS 772 (786)
Q Consensus 746 ~~~l~vs~~~t~~~lK~~i~~~~-~v~~ 772 (786)
.+.|.|..++||.+||-+|.+.+ |++|
T Consensus 37 ~i~l~v~~~~TV~~LK~~I~~~~~g~pp 64 (99)
T 2kdb_A 37 DQTISCFLNWTVGKLKTHLSNVYPSKPL 64 (99)
T ss_dssp CEEEEECTTSBHHHHHHHHHHHSTTCCC
T ss_pred EEEEEcCCCCHHHHHHHHHHHHhcCCCC
Confidence 56888999999999999999987 5555
No 90
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=57.56 E-value=7.5 Score=35.89 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=26.1
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
..+.+.|+.++||.+||.+|.+.+||++.
T Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gip~~ 39 (152)
T 3b08_A 11 KTITLEVEPSDTIENVKAKIQDKEGIPPD 39 (152)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCGG
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHCcChH
Confidence 35678999999999999999999999885
No 91
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=57.20 E-value=11 Score=34.67 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=26.5
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
....+.|+.++||.+||.+|.+..|+++.
T Consensus 87 ~~~~~~v~~~~tv~~lK~~i~~~~gi~~~ 115 (152)
T 3b08_A 87 KTITLEVEPSDTIENVKAKIQDKEGIPPD 115 (152)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHHCCCGG
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHhCcChh
Confidence 46788999999999999999999999985
No 92
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=56.12 E-value=11 Score=36.08 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=26.7
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
..+.+.|+.++||.+||.+|.+..||++.
T Consensus 107 ~~~~l~v~~~~tV~~lK~~I~~~~gip~~ 135 (172)
T 3u30_A 107 KTITLEVEPSDTIENVKAKIQDKEGIPPD 135 (172)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHHCCCGG
T ss_pred cceeEEecCCCCHHHHHHHHHHHhCCCce
Confidence 55788999999999999999999999985
No 93
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=55.74 E-value=7.4 Score=33.25 Aligned_cols=26 Identities=23% Similarity=0.184 Sum_probs=21.7
Q ss_pred EEEecccccHHHHHHHH-HHHhCcccc
Q 003922 748 NLKVSASTSIYQLKMMI-WESLGLCST 773 (786)
Q Consensus 748 ~l~vs~~~t~~~lK~~i-~~~~~v~~~ 773 (786)
.+.|+.++||.+||-+| .+..|+++.
T Consensus 17 ~v~v~~~~TV~~lK~~I~~~~~gip~~ 43 (87)
T 2lxa_A 17 EHDFSPSDTILQIKQHLISEEKASHIS 43 (87)
T ss_dssp CEECCTTCBHHHHHHHHHHTTSCSSST
T ss_pred EEcCCCCCcHHHHHHHHHHHhcCCChH
Confidence 33466999999999999 778899984
No 94
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=47.21 E-value=17 Score=38.47 Aligned_cols=33 Identities=21% Similarity=0.266 Sum_probs=28.6
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccccccCcee
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCSTKVFGKHK 780 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~~~~~~~~ 780 (786)
..+.+.|+.++||.+||.+|.+..||++. .|.+
T Consensus 244 k~~~leV~~s~TV~dLK~kI~~~~GIp~~---~QRL 276 (307)
T 3ai5_A 244 KTITLEVEPSDTIENVKAKIQDKEGIPPD---QQRL 276 (307)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHHHCCCGG---GCEE
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCcChH---HEEE
Confidence 45688999999999999999999999986 5544
No 95
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=43.99 E-value=17 Score=32.47 Aligned_cols=28 Identities=11% Similarity=0.199 Sum_probs=24.6
Q ss_pred eEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 746 FVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 746 ~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
-+.|.||.+.||.+||.++|+.-+-.|+
T Consensus 31 ~i~l~~~~~~tl~eiK~~lw~eA~~~PL 58 (108)
T 2v1y_A 31 IVTLECLREATLITIKHELFKEARKYPL 58 (108)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHGGGSTT
T ss_pred EEEEEeeccccHHHHHHHHHHHHHhCch
Confidence 4677899999999999999999877775
No 96
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=43.50 E-value=4.9 Score=38.14 Aligned_cols=28 Identities=25% Similarity=0.324 Sum_probs=0.0
Q ss_pred eEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 746 FVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 746 ~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
.+.|.|+.++||.+||.+|.+.+||++.
T Consensus 12 ~~~l~V~~~~TV~~LK~~I~~~~gip~~ 39 (152)
T 3u5c_f 12 TITLEVESSDTIDNVKSKIQDKEGIPPD 39 (152)
T ss_dssp ----------------------------
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCHH
Confidence 4578899999999999999999999875
No 97
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.07 E-value=25 Score=29.82 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=23.0
Q ss_pred EE-EecccccHHHHHHHHHHH-hCcccc
Q 003922 748 NL-KVSASTSIYQLKMMIWES-LGLCST 773 (786)
Q Consensus 748 ~l-~vs~~~t~~~lK~~i~~~-~~v~~~ 773 (786)
.| .|..++||.+||.+|-+. -||+|.
T Consensus 26 ~l~~v~~~~TV~~lK~~I~~~~~~i~~~ 53 (88)
T 2dzj_A 26 FLDKVEPHATIAEIKNLFTKTHPQWYPA 53 (88)
T ss_dssp EEEEECSSCBHHHHHHHHHHHCSSSCTT
T ss_pred EEeEcCCCCcHHHHHHHHHHHhcCCChH
Confidence 57 899999999999999996 688874
No 98
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=40.31 E-value=19 Score=31.58 Aligned_cols=23 Identities=30% Similarity=0.183 Sum_probs=20.3
Q ss_pred eccc-ccHHHHHHHHHHHh--Ccccc
Q 003922 751 VSAS-TSIYQLKMMIWESL--GLCST 773 (786)
Q Consensus 751 vs~~-~t~~~lK~~i~~~~--~v~~~ 773 (786)
|+.+ +||.+||.+|.+.. ||++.
T Consensus 40 v~~~~~TV~~LK~~i~~~~~~gip~~ 65 (107)
T 1x1m_A 40 YSLGGYSISFLKQLIAGKLQESVPDP 65 (107)
T ss_dssp SCCCCCBHHHHHHHHHHHCTTTCCCS
T ss_pred cCcccCCHHHHHHHHHHHhccCCChh
Confidence 5555 99999999999999 99985
No 99
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=36.74 E-value=35 Score=28.97 Aligned_cols=37 Identities=24% Similarity=0.282 Sum_probs=32.7
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccccccCceeeeeccC
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCSTKVFGKHKMLYFRS 786 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~~~~~~~~~~~~~~ 786 (786)
-.|.|.|....+.-+|.-||-+.|++++ +|+.|.||.
T Consensus 14 ~tvairvp~~~~y~~L~~~l~~kL~l~~-----~~~~LsYk~ 50 (83)
T 1oey_A 14 YTVVMKTQPGLPYSQVRDMVSKKLELRL-----EHTKLSYRP 50 (83)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHHTTCCG-----GGCCEEECC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCc-----ceeEEEeeC
Confidence 5789999999999999999999999985 688888763
No 100
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.13 E-value=43 Score=30.33 Aligned_cols=29 Identities=17% Similarity=0.121 Sum_probs=26.5
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
..+.+.|+.++||.+||..+-+.|+|++.
T Consensus 27 ~k~tv~v~~d~TV~dLKe~ls~~~~iP~e 55 (118)
T 2daf_A 27 QEIVIPFKVDTILKYLKDHFSHLLGIPHS 55 (118)
T ss_dssp CEEEEEECSSSCSHHHHHHHHHHHTCCTT
T ss_pred cEEEEEeCCCCcHHHHHHHHHhhhCCChH
Confidence 45778899999999999999999999995
No 101
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=33.07 E-value=42 Score=30.20 Aligned_cols=24 Identities=8% Similarity=0.151 Sum_probs=21.5
Q ss_pred CeEEEEecccccHHHHHHHHHHHh
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESL 768 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~ 768 (786)
..+.|.|..++||.+||-+|.+.+
T Consensus 27 ~t~~lev~~s~TV~~lK~kI~~~~ 50 (116)
T 1wgh_A 27 KTKEFLFSPNDSASDIAKHVYDNW 50 (116)
T ss_dssp CEEEEEECTTCBHHHHHHHHHHSS
T ss_pred CEEEEEECCcCHHHHHHHHHHHhc
Confidence 567889999999999999999965
No 102
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=32.73 E-value=52 Score=30.12 Aligned_cols=27 Identities=11% Similarity=0.004 Sum_probs=22.1
Q ss_pred eE-EEEecccccHHHHHHHHHHHh-----Cccc
Q 003922 746 FV-NLKVSASTSIYQLKMMIWESL-----GLCS 772 (786)
Q Consensus 746 ~~-~l~vs~~~t~~~lK~~i~~~~-----~v~~ 772 (786)
.+ .+.|..++||.+||.+|++.. |+++
T Consensus 28 ~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~ 60 (126)
T 1se9_A 28 DIGPKAFPDATTVSALKETVISEWPREKENGPK 60 (126)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCC
T ss_pred EEEeeecCccCHHHHHHHHHHhhcccccccCCC
Confidence 55 588999999999999997654 5665
No 103
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=29.51 E-value=60 Score=28.15 Aligned_cols=29 Identities=3% Similarity=0.154 Sum_probs=26.5
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCcccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCST 773 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~~ 773 (786)
..+.+-|.+..|+..+|-+|.+.-||+|.
T Consensus 24 ~~h~v~I~~~etv~~~ke~V~eqTgIp~~ 52 (94)
T 4efo_A 24 TAHKIYIHSYNTATIFHELVYKQTKIISS 52 (94)
T ss_dssp EEEEEEEETTCBHHHHHHHHHHHHCCCGG
T ss_pred eEEEEEeccchHHHHHHHHHHHHhCCCHH
Confidence 56678899999999999999999999994
No 104
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=28.34 E-value=46 Score=28.08 Aligned_cols=28 Identities=14% Similarity=0.363 Sum_probs=26.1
Q ss_pred CeEEEEecccccHHHHHHHHHHHhCccc
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESLGLCS 772 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~~v~~ 772 (786)
+..-|.||...|+++|+.-+||+|++..
T Consensus 17 ~~~DLRIP~~~tvK~Li~~l~ea~~l~~ 44 (81)
T 2bps_A 17 SVFDLRLSDYHPVKKVIDIAWQAQSVSM 44 (81)
T ss_dssp CEEEEEEETTSBTTHHHHHHHHHSCCCS
T ss_pred ceEEEECCCchhHHHHHHHHHHHhCCCc
Confidence 6778999999999999999999999985
No 105
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=27.12 E-value=46 Score=33.21 Aligned_cols=34 Identities=24% Similarity=0.377 Sum_probs=26.7
Q ss_pred EEEEeeccccCCceEEEEEEecCCCcEEEEcCCceeecC
Q 003922 109 AVLIHKGTAVNSGHYIALIKDENTGQWWEFDDEHVSNLG 147 (786)
Q Consensus 109 aVI~H~G~s~~sGHY~a~vr~~~~~~W~~fnD~~Vt~v~ 147 (786)
+-++-.|+. ++|||+.+... .+ +.+|...+.++.
T Consensus 162 ~~~vF~G~~-~~GHY~~~~~~--~~--~~vDG~~~~~~~ 195 (211)
T 3mp2_A 162 MHAVYTGTT-QNGHYMVDDIE--HG--YCVDGMGIKPLK 195 (211)
T ss_dssp EEEEEESCT-TTCEEEEEETT--TT--EEEETTEEECCC
T ss_pred eEEEEEcCC-CCceEEEEecc--cc--eEEeCCceeEcc
Confidence 344459995 99999999763 33 899999999986
No 106
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=26.95 E-value=47 Score=30.26 Aligned_cols=24 Identities=8% Similarity=0.151 Sum_probs=21.6
Q ss_pred CeEEEEecccccHHHHHHHHHHHh
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESL 768 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~ 768 (786)
..+.|.|+.++||.+||.+|.+.+
T Consensus 28 ~~~~lev~~s~TV~~lK~~I~~~~ 51 (125)
T 2gow_A 28 KTKEFLFSPNDSASDIAKHVYDNW 51 (125)
T ss_dssp CEEEEEECTTSBHHHHHHHHHSSC
T ss_pred CEEEEEeCCccHHHHHHHHHHHHC
Confidence 567899999999999999999965
No 107
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=21.33 E-value=51 Score=27.84 Aligned_cols=24 Identities=8% Similarity=-0.047 Sum_probs=21.2
Q ss_pred CeEEEEecccccHHHHHHHHHHHh
Q 003922 745 SFVNLKVSASTSIYQLKMMIWESL 768 (786)
Q Consensus 745 ~~~~l~vs~~~t~~~lK~~i~~~~ 768 (786)
..+.+.|+.++||.+||.+|.+..
T Consensus 18 ~~~~~~v~~~~TV~~LK~~i~~~~ 41 (95)
T 1wia_A 18 TEELAVARPEDTVGTLKSKYFPGQ 41 (95)
T ss_dssp EEEEEEECSSSBHHHHHHHHSSST
T ss_pred CEEEEEECCCCcHHHHHHHHHhhC
Confidence 346789999999999999999876
Done!