Your job contains 1 sequence.
>003924
MSLVSSKAELKRREKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSG
ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT
DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL
FGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLK
LAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDM
DQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARA
GRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIY
GRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPRE
GLHPMFKNVLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKK
RAVHEKIINLVHQQRSSKSMEKEVEPEADSLMAKEIKETHGSKRKAKTFKDEEYFISSVP
TNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGE
RVSASGKVVKTESGAKVKATKTGIYKKWKERSHKKVYLKGASNEGNAEETTSVPGGRHLG
GNNRKFRGGKNQQRSVPNAHVCSEIKDLDQVRKERQKKADRIAFMKGKTQKGKKFSKNGK
RGKPRK
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 003924
(786 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-021220-2 - symbol:ddx54 "DEAD (Asp-Glu-Ala-... 1432 1.3e-146 1
RGD|1562539 - symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) box po... 1412 1.7e-144 1
MGI|MGI:1919240 - symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) bo... 1407 5.9e-144 1
UNIPROTKB|E1BGI6 - symbol:DDX54 "Uncharacterized protein"... 1380 4.3e-141 1
UNIPROTKB|F1NTK9 - symbol:DDX54 "Uncharacterized protein"... 1370 4.9e-140 1
UNIPROTKB|E2QSR5 - symbol:DDX54 "Uncharacterized protein"... 1353 3.1e-138 1
UNIPROTKB|Q8TDD1 - symbol:DDX54 "ATP-dependent RNA helica... 1348 1.1e-137 1
DICTYBASE|DDB_G0292992 - symbol:helA "putative RNA helica... 780 5.7e-135 3
ASPGD|ASPL0000054300 - symbol:AN0583 species:162425 "Emer... 746 3.4e-133 4
POMBASE|SPAC31A2.07c - symbol:dbp10 "ATP-dependent RNA he... 681 1.6e-128 2
WB|WBGene00022378 - symbol:Y94H6A.5 species:6239 "Caenorh... 1189 7.4e-121 1
CGD|CAL0003464 - symbol:orf19.5991 species:5476 "Candida ... 678 8.7e-115 2
FB|FBgn0052344 - symbol:CG32344 species:7227 "Drosophila ... 1079 3.4e-109 1
SGD|S000002189 - symbol:DBP10 "Putative ATP-dependent RNA... 675 1.2e-105 3
UNIPROTKB|F1RKB2 - symbol:DDX54 "Uncharacterized protein"... 426 2.1e-74 2
UNIPROTKB|F6UKZ0 - symbol:DDX54 "Uncharacterized protein"... 672 4.5e-66 1
UNIPROTKB|F8VRX4 - symbol:DDX54 "ATP-dependent RNA helica... 662 5.2e-65 1
ZFIN|ZDB-GENE-050706-47 - symbol:zgc:111908 "zgc:111908" ... 583 4.2e-63 2
GENEDB_PFALCIPARUM|MAL8P1.19 - symbol:MAL8P1.19 "RNA heli... 585 1.0e-61 3
UNIPROTKB|Q8IBA2 - symbol:MAL8P1.19 "RNA helicase, putati... 585 1.0e-61 3
ASPGD|ASPL0000013201 - symbol:AN4233 species:162425 "Emer... 620 1.5e-60 1
TAIR|locus:2173517 - symbol:AT5G60990 species:3702 "Arabi... 576 7.8e-60 2
CGD|CAL0000864 - symbol:DRS1 species:5476 "Candida albica... 583 2.0e-59 2
UNIPROTKB|Q5ACK7 - symbol:DRS1 "ATP-dependent RNA helicas... 583 2.0e-59 2
POMBASE|SPAC30D11.03 - symbol:ddx27 "ATP-dependent RNA he... 568 2.0e-59 2
UNIPROTKB|A4QYM6 - symbol:DRS1 "ATP-dependent RNA helicas... 587 4.2e-59 2
DICTYBASE|DDB_G0281711 - symbol:ddx27 "DEAD/DEAH box heli... 606 4.5e-59 1
SGD|S000003931 - symbol:DRS1 "Nucleolar DEAD-box protein ... 566 5.4e-59 2
WB|WBGene00012059 - symbol:T26G10.1 species:6239 "Caenorh... 574 3.8e-58 2
ASPGD|ASPL0000062195 - symbol:AN10125 species:162425 "Eme... 571 6.5e-58 2
DICTYBASE|DDB_G0280147 - symbol:ddx47 "DEAD/DEAH box heli... 592 1.4e-57 1
UNIPROTKB|A1A4H6 - symbol:DDX27 "Probable ATP-dependent R... 592 1.4e-57 1
TIGR_CMR|SO_1383 - symbol:SO_1383 "ATP-dependent RNA heli... 589 2.8e-57 1
CGD|CAL0000056 - symbol:orf19.7546 species:5476 "Candida ... 586 5.9e-57 1
UNIPROTKB|J9P9C6 - symbol:DDX27 "Uncharacterized protein"... 586 5.9e-57 1
MGI|MGI:2385884 - symbol:Ddx27 "DEAD (Asp-Glu-Ala-Asp) bo... 586 5.9e-57 1
SGD|S000001107 - symbol:RRP3 "Protein involved in rRNA pr... 586 5.9e-57 1
TIGR_CMR|GSU_0914 - symbol:GSU_0914 "ATP-dependent RNA he... 585 7.5e-57 1
UNIPROTKB|Q96GQ7 - symbol:DDX27 "Probable ATP-dependent R... 584 9.6e-57 1
UNIPROTKB|F1Q073 - symbol:DDX27 "Uncharacterized protein"... 583 1.2e-56 1
ZFIN|ZDB-GENE-050522-359 - symbol:zgc:112350 "zgc:112350"... 561 1.8e-56 2
UNIPROTKB|Q83DM8 - symbol:rhlE "ATP-dependent RNA helicas... 580 2.5e-56 1
TIGR_CMR|CBU_0670 - symbol:CBU_0670 "ATP-dependent RNA he... 580 2.5e-56 1
TIGR_CMR|CPS_1125 - symbol:CPS_1125 "ATP-dependent RNA he... 579 3.3e-56 1
WB|WBGene00022148 - symbol:Y71G12B.8 species:6239 "Caenor... 539 6.1e-56 2
UNIPROTKB|F1NYX0 - symbol:DDX49 "Uncharacterized protein"... 534 6.1e-56 2
UNIPROTKB|F1NQV5 - symbol:DDX27 "Uncharacterized protein"... 575 8.6e-56 1
TAIR|locus:2130918 - symbol:AT4G16630 species:3702 "Arabi... 551 9.6e-56 2
UNIPROTKB|Q9KMW4 - symbol:VC_A0204 "ATP-dependent RNA hel... 574 1.1e-55 1
TIGR_CMR|VC_A0204 - symbol:VC_A0204 "ATP-dependent RNA he... 574 1.1e-55 1
ZFIN|ZDB-GENE-031001-8 - symbol:ddx27 "DEAD (Asp-Glu-Ala-... 574 1.1e-55 1
POMBASE|SPAC823.08c - symbol:SPAC823.08c "ATP-dependent R... 572 1.8e-55 1
UNIPROTKB|Q5ZLB0 - symbol:DDX47 "Uncharacterized protein"... 568 4.8e-55 1
UNIPROTKB|Q5L3G9 - symbol:cshA "DEAD-box ATP-dependent RN... 568 4.8e-55 1
UNIPROTKB|F1S7D9 - symbol:DDX49 "Uncharacterized protein"... 530 5.4e-55 2
UNIPROTKB|E2RBM7 - symbol:DDX49 "Uncharacterized protein"... 528 5.4e-55 2
UNIPROTKB|P25888 - symbol:rhlE "ATP-dependent RNA helicas... 567 6.1e-55 1
UNIPROTKB|Q48AV0 - symbol:CPS_0042 "ATP-dependent RNA hel... 567 6.1e-55 1
TIGR_CMR|CPS_0042 - symbol:CPS_0042 "ATP-dependent RNA he... 567 6.1e-55 1
UNIPROTKB|Q9Y6V7 - symbol:DDX49 "Probable ATP-dependent R... 526 6.9e-55 2
UNIPROTKB|E1C187 - symbol:DDX27 "Uncharacterized protein"... 566 7.8e-55 1
UNIPROTKB|Q3AFI3 - symbol:CHY_0229 "ATP-dependent RNA hel... 564 1.3e-54 1
TIGR_CMR|CHY_0229 - symbol:CHY_0229 "ATP-dependent RNA he... 564 1.3e-54 1
UNIPROTKB|Q0C4B9 - symbol:HNE_0695 "Putative ATP-dependen... 561 2.6e-54 1
RGD|1311124 - symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box po... 525 3.7e-54 2
MGI|MGI:2136689 - symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) bo... 522 7.8e-54 2
UNIPROTKB|A0R8U6 - symbol:cshA "DEAD-box ATP-dependent RN... 555 1.1e-53 1
UNIPROTKB|Q63GX5 - symbol:cshA "DEAD-box ATP-dependent RN... 555 1.1e-53 1
UNIPROTKB|Q6HPE6 - symbol:cshA "DEAD-box ATP-dependent RN... 555 1.1e-53 1
UNIPROTKB|Q73EU1 - symbol:cshA "DEAD-box ATP-dependent RN... 555 1.1e-53 1
UNIPROTKB|Q81IT9 - symbol:cshA "DEAD-box ATP-dependent RN... 555 1.1e-53 1
UNIPROTKB|Q81VG0 - symbol:cshA "DEAD-box ATP-dependent RN... 555 1.1e-53 1
TIGR_CMR|BA_0247 - symbol:BA_0247 "ATP-dependent RNA heli... 555 1.1e-53 1
UNIPROTKB|Q8EBV7 - symbol:SO_3388 "ATP-dependent RNA heli... 554 1.5e-53 1
TIGR_CMR|SO_3388 - symbol:SO_3388 "ATP-dependent RNA heli... 554 1.5e-53 1
TIGR_CMR|SO_3783 - symbol:SO_3783 "ATP-dependent RNA heli... 554 1.5e-53 1
UNIPROTKB|Q0C354 - symbol:rhlE "ATP-dependent RNA helicas... 533 2.0e-53 2
MGI|MGI:1915005 - symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) bo... 552 2.4e-53 1
UNIPROTKB|G3V727 - symbol:Ddx47 "Protein Ddx47" species:1... 552 2.4e-53 1
UNIPROTKB|P96614 - symbol:cshA "DEAD-box ATP-dependent RN... 551 3.0e-53 1
UNIPROTKB|Q65N62 - symbol:cshA "DEAD-box ATP-dependent RN... 551 3.0e-53 1
TIGR_CMR|DET_0183 - symbol:DET_0183 "ATP-dependent RNA he... 551 3.0e-53 1
UNIPROTKB|P0A9P6 - symbol:deaD "DeaD, DEAD-box RNA helica... 529 3.3e-53 2
FB|FBgn0032919 - symbol:CG9253 species:7227 "Drosophila m... 550 3.8e-53 1
UNIPROTKB|Q29S22 - symbol:DDX47 "Probable ATP-dependent R... 549 4.9e-53 1
UNIPROTKB|Q9H0S4 - symbol:DDX47 "Probable ATP-dependent R... 549 4.9e-53 1
DICTYBASE|DDB_G0270396 - symbol:ddx49 "DEAD/DEAH box heli... 512 5.4e-53 2
UNIPROTKB|E2RN03 - symbol:DDX47 "Uncharacterized protein"... 548 6.3e-53 1
UNIPROTKB|Q9KS53 - symbol:VC1407 "ATP-dependent RNA helic... 548 6.3e-53 1
TIGR_CMR|VC_1407 - symbol:VC_1407 "ATP-dependent RNA heli... 548 6.3e-53 1
ZFIN|ZDB-GENE-031030-3 - symbol:ddx49 "DEAD (Asp-Glu-Ala-... 546 1.0e-52 1
UNIPROTKB|Q8EI96 - symbol:srmB "ATP-dependent RNA helicas... 525 1.4e-52 2
TIGR_CMR|SO_0947 - symbol:SO_0947 "ATP-dependent RNA heli... 525 1.4e-52 2
UNIPROTKB|P21507 - symbol:srmB "SrmB, DEAD-box RNA helica... 544 1.7e-52 1
TAIR|locus:2162022 - symbol:AT5G63120 species:3702 "Arabi... 542 2.7e-52 1
TIGR_CMR|CPS_1418 - symbol:CPS_1418 "ATP-dependent RNA he... 541 3.5e-52 1
UNIPROTKB|I3LQ10 - symbol:LOC100626268 "Uncharacterized p... 519 4.8e-52 2
UNIPROTKB|Q9KLH6 - symbol:VC_A0768 "ATP-dependent RNA hel... 539 5.6e-52 1
TIGR_CMR|VC_A0768 - symbol:VC_A0768 "ATP-dependent RNA he... 539 5.6e-52 1
UNIPROTKB|Q4K8U0 - symbol:deaD "Cold-shock DEAD box prote... 537 9.2e-52 1
WARNING: Descriptions of 799 database sequences were not reported due to the
limiting value of parameter V = 100.
>ZFIN|ZDB-GENE-021220-2 [details] [associations]
symbol:ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
54" species:7955 "Danio rerio" [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-021220-2 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K14808
HOGENOM:HOG000246455 GeneTree:ENSGT00550000075100 CTD:79039
HOVERGEN:HBG051333 OrthoDB:EOG469QTB EMBL:CU929062 EMBL:FP236447
EMBL:AY099535 IPI:IPI00481864 RefSeq:NP_775375.1 UniGene:Dr.18320
STRING:Q8JGR2 Ensembl:ENSDART00000026416 Ensembl:ENSDART00000128587
GeneID:286777 KEGG:dre:286777 NextBio:20806437 Uniprot:Q8JGR2
Length = 862
Score = 1432 (509.1 bits), Expect = 1.3e-146, P = 1.3e-146
Identities = 327/766 (42%), Positives = 470/766 (61%)
Query: 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPML 82
GGF+S+ LS V++ I +KGYKVPTPIQRKT+P+IL G DVVAMARTGSGKTAAFLVP+
Sbjct: 78 GGFQSMGLSYPVYKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTAAFLVPLF 137
Query: 83 QRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
++L Q G RALIL+PTR+LALQT+KFTKELG++T LR +L++GGDSM+ QF L +
Sbjct: 138 EKLKAPQAQTGARALILTPTRELALQTMKFTKELGKFTGLRTALILGGDSMDDQFAALHE 197
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
NPDIII TPGRLMH + E+ ++ L+SVEYVVFDEAD LF MGFAEQL +I+ +L + RQT
Sbjct: 198 NPDIIIGTPGRLMHVIQEM-NLKLQSVEYVVFDEADRLFEMGFAEQLQEIIRRLPDARQT 256
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
LLFSATLP + EFA+AGL +P L+RLDVDTK+S LKL+FF+LR ++K A LL+++R
Sbjct: 257 LLFSATLPKLIVEFARAGLTEPVLIRLDVDTKLSEQLKLSFFSLRLDDKPALLLHLLRNV 316
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
+ +QT++FV+TKHHVE+L L EG++ S Y +DQ ARKI + RF RK M L+V
Sbjct: 317 VKPQEQTVVFVATKHHVEYLKELLSAEGVDCSCIYSALDQTARKISIGRFVHRKVMLLLV 376
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLH 382
TDVAARGIDIPLLDNVIN++FP KPK+F+HRV +S V +++ YL DLH
Sbjct: 377 TDVAARGIDIPLLDNVINYNFPCKPKLFLHRVGRVARAGRGGTAYSLVCPDEVPYLYDLH 436
Query: 383 LFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSS 442
LFL +P++ A E + DGV +GR PQ+V+D ++ +S
Sbjct: 437 LFLGRPMQLAHPEHTQ--EADGV--------------FGRVPQSVLDDEECQLITAHQNS 480
Query: 443 ADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKD--LPREGLHPMFKNVLEGGELMALAF 500
DL +L+R NA++ Y K++P+PS ESI+R ++ L +HP+ LE EL L
Sbjct: 481 LDLQNLRRVSENAYKQYLKSRPVPSAESIKRSRNTQLTDMAVHPLLGCGLEKMELDRLLM 540
Query: 501 SERLKAFRPKQTILE--AEGEAARSKHLQGPSS---QWVDVMKKKRAV--HEKIINLVHQ 553
+ +K ++ K TI E + + + S+ ++ S Q V+ + RA E L +
Sbjct: 541 VDTIKGYKAKSTIFEINSSNKTSASEVMRAKRSRDRQRVEKFSRARAELRAEPGAGLRAE 600
Query: 554 QRSSKSMEKEVEPEADSLMA--KEI-----------KETHGSKRKAKTFKDEEYFISSVP 600
+ ++E E E + L E+ TH SK+ +D+E++I P
Sbjct: 601 PPVHRETQEEDEEEQEELSTVFSEVVGGKRRRPDAEPHTHKSKKSRTAGRDQEFYIPYRP 660
Query: 601 TNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGE 660
+ + E GLS+ S G + +AVLDL+ D+S L + K + WD++ K++++ + G+
Sbjct: 661 KDFNSERGLSLDSGAGSFEQQASSAVLDLIGDESNTLNQHKSLMKWDRKKKRFVR-DTGK 719
Query: 661 RVSASGKVVKTESGAKVKA--TKTGIYKKWKERSHKKVYLKGASNEGNAEETTSVPGGRH 718
K ++TESG ++ K Y++WK KK ++G +++ + E + G
Sbjct: 720 E--DKHKKIRTESGQLIRGHKKKKSFYEEWK----KKYKVEGGASDSDGEGGGAQRGRGS 773
Query: 719 LXXXXXXXXXXXXQQRSVPNAH-----VCSEIKDLDQVRKERQKKA 759
++ P H V SE+K+ Q+ K+R++KA
Sbjct: 774 AGRRGRGRGRSAAGSQATPAQHQGGSGVRSELKNRQQILKQRKRKA 819
>RGD|1562539 [details] [associations]
symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54"
species:10116 "Rattus norvegicus" [GO:0003714 "transcription
corepressor activity" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISO] [GO:0005102 "receptor binding" evidence=ISO]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO] [GO:0006396
"RNA processing" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016070 "RNA metabolic process"
evidence=ISO] [GO:0030331 "estrogen receptor binding" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:1562539 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730 GO:GO:0003723
GO:GO:0006396 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000075100 IPI:IPI00193685
Ensembl:ENSRNOT00000001859 UCSC:RGD:1562539 OrthoDB:EOG469QTB
Uniprot:D3ZHY6
Length = 906
Score = 1412 (502.1 bits), Expect = 1.7e-144, P = 1.7e-144
Identities = 315/759 (41%), Positives = 462/759 (60%)
Query: 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPML 82
GGF+S+ LS VF+ I +KGYKVPTPIQRKT+P+IL G DVVAMARTGSGKTA FL+PM
Sbjct: 95 GGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMF 154
Query: 83 QRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
+RL Q G RALILSPTR+LALQT+KFTKELG++T L+ +L++GGD ME QF L +
Sbjct: 155 ERLKARSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHE 214
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
NPDIIIATPGRL+H E+ ++ L+SVEYVVFDEAD LF MGFAEQL +I+G+L QT
Sbjct: 215 NPDIIIATPGRLVHVAVEM-NLKLQSVEYVVFDEADRLFEMGFAEQLQEIIGRLPGGHQT 273
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
+LFSATLP L EFA+AGL +P L+RLDVD+K++ LK +FF +R++ K A LLY+++
Sbjct: 274 VLFSATLPKLLVEFARAGLTEPVLIRLDVDSKLNEQLKTSFFLVREDTKTAVLLYLLQNV 333
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
+ Q ++FV+TKHH E+L L +G+ + Y +DQ ARKI++++F K LIV
Sbjct: 334 VRPQDQNVVFVATKHHAEYLTELLTGQGVSCAHIYSALDQTARKINLAKFTHNKCSTLIV 393
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLH 382
TD+AARG+DIPLLDNVIN+ FP K K+F+HRV +S V +++ YLLDLH
Sbjct: 394 TDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEVPYLLDLH 453
Query: 383 LFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSS 442
LFL + + A EE G + + + + GR PQ+V+D ++ + +S
Sbjct: 454 LFLGRSVTLARPHEEP--SSAGAVGR--------DGVLGRVPQSVVDDEDSSLQTALQAS 503
Query: 443 ADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK--DLPREGLHPMFKNVLEGGELMALAF 500
+L LQR NA + Y +++P PS ESI+R K DL GLHP+F + E GEL L
Sbjct: 504 LELQGLQRVANNAQQQYLRSRPAPSPESIKRAKELDLAELGLHPLFSSCFEEGELQRLRL 563
Query: 501 SERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKK--RAV---HEKI-------I 548
+ +K +R + TI E A SK PSSQ + +++ +A+ H+
Sbjct: 564 VDSIKNYRTRTTIFEIN---ASSKD---PSSQMMRAKRQRDRKAITSFHQGRQERQDGPA 617
Query: 549 NLVHQQRSSKSMEKEVEPEADSLMAKEIKE-------THGSKRKAK--TFKDEEYFISSV 599
+ V Q+ + E+++ + + + + + G+KR+ K + +D+E+++
Sbjct: 618 DPVPQRELPQKEEEDMVETVEGVFTEVVGQKQPRPGPNQGAKRRRKEASQRDQEFYVPYR 677
Query: 600 PTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNG 659
P + E GLSV G ++ AVLDL+ D++ + + +Q WD++ K+++ G
Sbjct: 678 PKDFDSERGLSVSGAGGAFEQQVAGAVLDLMGDEAQNMSRGRQQLKWDRKKKRFV----G 733
Query: 660 ERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNAEETTSVPGGRH 718
+ K +KTESG + ++ K +Y+KWK++ +K+ + + EG + PG
Sbjct: 734 QSGQEDKKKIKTESGRFISSSYKRDLYQKWKQK--QKIDDRDSEEEGPSNRRG--PGPHR 789
Query: 719 LXXXXXXXXXXXXQQRSVPNAHVCSEIKDLDQVRKERQK 757
+ SVP H+ SE+K +Q+ K+R++
Sbjct: 790 GGKRGRSQGASQSRASSVPTGHMRSELKTKEQILKQRRQ 828
>MGI|MGI:1919240 [details] [associations]
symbol:Ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003714 "transcription corepressor activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005102 "receptor binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006396 "RNA processing" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016070 "RNA metabolic process" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0030331 "estrogen receptor binding" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1919240 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0006355 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
GO:GO:0030331 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14808 HOGENOM:HOG000246455 OMA:FYIPYRP
GeneTree:ENSGT00550000075100 CTD:79039 HOVERGEN:HBG051333
EMBL:AF319547 EMBL:BC043699 IPI:IPI00875042 RefSeq:NP_082317.1
UniGene:Mm.24495 ProteinModelPortal:Q8K4L0 SMR:Q8K4L0 STRING:Q8K4L0
PhosphoSite:Q8K4L0 PaxDb:Q8K4L0 PRIDE:Q8K4L0
Ensembl:ENSMUST00000031598 GeneID:71990 KEGG:mmu:71990
UCSC:uc008zhq.1 NextBio:335150 Bgee:Q8K4L0 CleanEx:MM_DDX54
Genevestigator:Q8K4L0 Uniprot:Q8K4L0
Length = 874
Score = 1407 (500.3 bits), Expect = 5.9e-144, P = 5.9e-144
Identities = 321/768 (41%), Positives = 463/768 (60%)
Query: 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPML 82
GGF+S+ LS VF+ I +KGYKVPTPIQRKT+P+IL G DVVAMARTGSGKTA FL+PM
Sbjct: 95 GGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMF 154
Query: 83 QRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
+RL Q G RALILSPTR+LALQT+KFTKELG++T L+ +L++GGD ME QF L +
Sbjct: 155 ERLKARSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHE 214
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
NPDIIIATPGRL+H E+ ++ L+SVEYVVFDEAD LF MGFAEQL +I+G+L QT
Sbjct: 215 NPDIIIATPGRLVHVAVEM-NLKLQSVEYVVFDEADRLFEMGFAEQLQEIIGRLPGGHQT 273
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
+LFSATLP L EFA+AGL +P L+RLDVD+K++ LK +F +R++ K A LLY+++
Sbjct: 274 VLFSATLPKLLVEFARAGLTEPVLIRLDVDSKLNEQLKTSFLLVREDTKAAVLLYLLQNV 333
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
+ QT++FV+TKHH E+L L +G+ + Y +DQ ARKI++++F K LIV
Sbjct: 334 VRPQDQTVVFVATKHHAEYLTELLMGQGVSCAHIYSALDQTARKINLAKFTHNKCSTLIV 393
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLH 382
TD+AARG+DIPLLDNVIN+ FP K K+F+HRV +S V +++ YLLDLH
Sbjct: 394 TDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEVPYLLDLH 453
Query: 383 LFLSKPIRAA-PSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDS 441
LFL + + A P EE + D G +G + GR PQ+V+D ++ + +
Sbjct: 454 LFLGRSVTLARPCEEPSVADAVG---------RDG--VLGRVPQSVVDDEDSSLQTAMGA 502
Query: 442 SADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK--DLPREGLHPMFKNVLEGGELMALA 499
S DL L R NA + Y +++P PS ESI+R K DL GLHP+F + E GEL L
Sbjct: 503 SLDLQGLHRVANNAQQQYVRSRPAPSPESIKRAKELDLAELGLHPLFSSCFEEGELQRLR 562
Query: 500 FSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQR---- 555
+ +K +R + TI E A SK PSSQ + +++ Q+R
Sbjct: 563 LVDSIKNYRTRTTIFEIN---ASSKD---PSSQMMRAKRQRDRKAVASFQQRRQERQEGP 616
Query: 556 SSKSMEKEVEPEADSLMAKEIK----ETHGSKR---------KAKTF----KDEEYFISS 598
+ + ++E+ E + M + ++ E G KR K + +D+E+++
Sbjct: 617 ADPAPQRELPQEEEEEMVETVEGVFTEVVGQKRPRPGPSQGAKRRRMETRQRDQEFYVPY 676
Query: 599 VPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNN 658
P + E GLSV G ++ AVLDL+ D++ + + +Q WD++ K+++
Sbjct: 677 RPKDFDSERGLSVSGAGGAFEQQVAGAVLDLMGDEAQNMSRGQQQLKWDRKKKRFV---- 732
Query: 659 GERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNAEETTSVPGGR 717
G+ K +KTESG + ++ K +Y+KWK++ +K+ + + EG + + PG R
Sbjct: 733 GQSGQEDKKKIKTESGRFISSSYKRDLYQKWKQK--QKIDDRDSEEEGPSNQRG--PGPR 788
Query: 718 HLXXXXXXXXXXXXQQRSVPNAHVCSEIKDLDQVRKERQKKADRIAFM 765
+ SVP + SE+K +Q+ K+R ++A + F+
Sbjct: 789 RGGKRGRSQGTSQPRASSVPAGRMRSELKTKEQILKQR-RQAQKQRFL 835
>UNIPROTKB|E1BGI6 [details] [associations]
symbol:DDX54 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030331 "estrogen receptor binding" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0003714 "transcription corepressor activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0003723 GO:GO:0006396 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
OMA:FYIPYRP GeneTree:ENSGT00550000075100 EMBL:DAAA02045421
IPI:IPI00690851 Ensembl:ENSBTAT00000029525 Uniprot:E1BGI6
Length = 877
Score = 1380 (490.8 bits), Expect = 4.3e-141, P = 4.3e-141
Identities = 315/771 (40%), Positives = 456/771 (59%)
Query: 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPML 82
GGF+S+ LS VF+ I +KGYKVPTPIQRKT+P+IL G DVVAMARTGSGKTA FL+PM
Sbjct: 96 GGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPMILDGKDVVAMARTGSGKTACFLIPMF 155
Query: 83 QRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
+RL H Q G RALILSPTR+LALQT+KFTKELG++T L+ +L++GGD ME QF L +
Sbjct: 156 ERLKTHSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHE 215
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
NPDIIIATPGRL+H E+ ++ L+SVEYVVFDEAD LF MGFAEQL +I+G+L QT
Sbjct: 216 NPDIIIATPGRLVHVAVEM-NLKLQSVEYVVFDEADRLFEMGFAEQLQEIIGRLPGGHQT 274
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
+LFSATLP L EFA+AGL +P L+RLDVD+K++ LK +FF +R++ K A LL+++R
Sbjct: 275 VLFSATLPKLLVEFARAGLTEPVLIRLDVDSKLNEQLKTSFFLVREDAKAAVLLHLLRNV 334
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
+ QT++FV+TKHH E+L+ L +G+ + Y +DQ ARKI+++RF K LIV
Sbjct: 335 VRPQDQTVVFVATKHHAEYLSELLATQGVSCAHIYSALDQTARKINLARFTHGKCSALIV 394
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLH 382
TD+AARG+DIPLLDNVIN+ FP K K+F+HRV +S V +++ YLLDLH
Sbjct: 395 TDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEVPYLLDLH 454
Query: 383 LFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSS 442
LFL + + A EE G+ + GR PQ V+D +R +++S
Sbjct: 455 LFLGRALTLARPPEE------------PSGTEGGDGVLGRVPQGVVDDEDCGLRTSLEAS 502
Query: 443 ADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK--DLPREGLHPMFKNVLEGGELMALAF 500
+L L R NA + Y +++P PS ESI+R K DL GLHP+F + + EL L
Sbjct: 503 LELRGLSRVANNAQQQYVRSRPAPSPESIKRAKELDLAGLGLHPLFSSRFQQEELQRLRL 562
Query: 501 SERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRS---- 556
+ ++ +R + TI E A S+ L SSQ + ++K Q+R
Sbjct: 563 VDSIRNYRSRATIFEIN---ASSRDL---SSQVMRAKREKDRKAIASFQQGRQERQEGPA 616
Query: 557 ----SKSMEKEVEPEADSLMAKEIKET---------------HGSKRKAKTFK--DEEYF 595
S +E +PE + + + +++ G+KR+ + + D+ ++
Sbjct: 617 GPTPSLPAPQEEQPEKEEVAGESVEDVFTEVVGRKRQQPGPQRGAKRRREEARQRDQAFY 676
Query: 596 ISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIK 655
I P + E GLS+ D G ++ A LDL+ D++ L + +Q WD++ K+++
Sbjct: 677 IPYRPKDFDSERGLSIGGDGGAFEQQVAGAALDLMGDEAQSLTRGRQQLRWDRKKKRFV- 735
Query: 656 LNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNAEETTSVP 714
G+ K +KTESG + ++ K +Y+KWK++ +K+ + + EG + P
Sbjct: 736 ---GQSGQEDKKKIKTESGRYISSSYKRDLYQKWKQK--QKIDDRDSEEEGTFDRRG--P 788
Query: 715 GGRHLXXXXXXXXXXXXQQRSVPNAHVCSEIKDLDQVRKERQKKADRIAFM 765
R + P V SE+K Q+ K+R ++A ++ F+
Sbjct: 789 ERRGGKRGRGQAGASQPRTPGTPAGRVLSELKTKQQILKQR-RRAQKMRFL 838
>UNIPROTKB|F1NTK9 [details] [associations]
symbol:DDX54 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003714 "transcription corepressor
activity" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030331 "estrogen
receptor binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003714 GO:GO:0005730 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00550000075100
EMBL:AADN02043183 IPI:IPI00582285 ProteinModelPortal:F1NTK9
Ensembl:ENSGALT00000012108 Uniprot:F1NTK9
Length = 822
Score = 1370 (487.3 bits), Expect = 4.9e-140, P = 4.9e-140
Identities = 320/767 (41%), Positives = 455/767 (59%)
Query: 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPML 82
GGF+S+ LS VF+ + +KGYKVPTPIQRKT+P+IL G DVVAMARTGSGKTA FL+PM
Sbjct: 36 GGFQSMGLSYPVFKGVMKKGYKVPTPIQRKTIPVILRGRDVVAMARTGSGKTACFLLPMF 95
Query: 83 QRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
+RL P G RALILSPTR+LALQTLKFTKELG++T L+ +L++GGD ME QF L +
Sbjct: 96 ERLKAPSPSGA-RALILSPTRELALQTLKFTKELGKFTGLKTALVLGGDKMEDQFAALHE 154
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
NPDIIIATPGRL+H E+ ++ L+SVEYVVFDEAD LF MGFAEQL +IL +L + QT
Sbjct: 155 NPDIIIATPGRLVHVAVEM-NLKLQSVEYVVFDEADRLFEMGFAEQLQEILARLPGSHQT 213
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
+LFSATLP L EFA+AGL +P L+RLDV++K+S LKLAFF +R ++K A LL+++R
Sbjct: 214 VLFSATLPKLLVEFARAGLTEPMLIRLDVESKLSEQLKLAFFHVRGDDKPAVLLHLLRCV 273
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
+ QT++FV+TKHH E+L L +G+ + Y +DQ ARKI++++F K L+V
Sbjct: 274 VKPQDQTVVFVATKHHTEYLKELLTSQGICCTHIYSSLDQTARKINIAKFAHGKCQVLLV 333
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLH 382
TDVAARG+DIP+LDNVIN+ FP K K+F+HRV +S V ++M Y+ DLH
Sbjct: 334 TDVAARGLDIPMLDNVINYSFPAKSKLFLHRVGRVARAGRSGTAYSLVAPDEMPYIFDLH 393
Query: 383 LFLSKPIRAAPSEEEVL--LDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIID 440
LFL +P+ A ++E D DGV+ ++ Q++ + E L++D +
Sbjct: 394 LFLGRPLILAGAQEMPAGAADADGVLGRVPQSLVDDEECL---------LLTDH-----E 439
Query: 441 SSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK--DLPREGLHPMFKNVLEGGELMAL 498
S +L SL+R NA + Y +++P PS ESI+R K DL + G+HP+F E EL L
Sbjct: 440 GSLELQSLRRVADNAQKQYLRSRPGPSPESIKRVKEMDLSQLGIHPLFSAHFEDTELERL 499
Query: 499 AFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVD---VMKKKRAVHEKIINLVHQQ- 554
+ +KA++ K TI E A S + D + K +R EK + Q
Sbjct: 500 KLVDSIKAYKSKATIFEINSTARTLASSIMRSKRQHDRPLIEKFQRGQEEKRAAALKGQG 559
Query: 555 -RSSKSMEKEVEPEADSLMA-----KEIKETH-GSKRKAKTF--------------KDEE 593
+ +E E E ++L +E+ T G KRK +DE+
Sbjct: 560 LHPATPRPEEEEGEEENLQVTGPAFQEVFSTVVGRKRKRSRAAEDGARKKPQPPAQRDED 619
Query: 594 YFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKY 653
++I P + E GLSV + + AVLDL+ D+S L + KQ+ WD++ K++
Sbjct: 620 FYIPYRPKDFESERGLSVGGEGSAFEQQAAGAVLDLMGDESHNLNRSKQLLKWDRKKKRF 679
Query: 654 IKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNAEETTS 712
+ G+ K V+TESG + ++ K +Y+KWK+++ + N+G E+T+
Sbjct: 680 V----GQTGQEEKKKVRTESGRYISSSYKNNLYEKWKQKNKVDERDEDEDNQGGREQTS- 734
Query: 713 VPGGRHLXXXXXXXXXXXXQQRSVPNAHVCSEIKDLDQVRKERQKKA 759
+H Q+ V SE+K+ Q+ K+R+ A
Sbjct: 735 ----KHGFTSTHGRVCPAAPQKPPAQGKVRSELKNKQQILKQRKAAA 777
>UNIPROTKB|E2QSR5 [details] [associations]
symbol:DDX54 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
Ensembl:ENSCAFT00000014352 Uniprot:E2QSR5
Length = 912
Score = 1353 (481.3 bits), Expect = 3.1e-138, P = 3.1e-138
Identities = 321/765 (41%), Positives = 448/765 (58%)
Query: 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPML 82
GGF+S+ LS VF+ I +KGYKVPTPIQRKT+P+IL G DVVAMARTGSGKTA FL+PM
Sbjct: 96 GGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLIPMF 155
Query: 83 QRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
+RL H Q G RALILSPTR+LALQT+KFTKELG++T LR +L++GGD ME QF L +
Sbjct: 156 ERLKTHSAQTGARALILSPTRELALQTMKFTKELGKFTGLRTALILGGDKMEDQFAALHE 215
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
NPDIIIATPGRL+H E+ ++ L+SVEYV D D LF MGFAEQL +I+G+L QT
Sbjct: 216 NPDIIIATPGRLVHVAVEM-NLKLQSVEYV--DSIDWLFEMGFAEQLQEIIGRLPGGHQT 272
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
+LFSATLP L EFA+AGL +P L+RLDVD K++ LK +FF +R++ K A LL+++R
Sbjct: 273 VLFSATLPKLLVEFARAGLTEPVLIRLDVDAKLNEQLKTSFFLVREDTKAAVLLHLLRTV 332
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
+ QT++FV+TKHH E+L+ L +G+ + Y +DQ ARKI++++F K LIV
Sbjct: 333 VRPQDQTVVFVATKHHAEYLSELLTTQGVSCTHIYSALDQTARKINLAKFTHNKCSALIV 392
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLH 382
TD+AARG+DIPLLDNVIN+ FP K K+F+HRV +S V +++ YLLDLH
Sbjct: 393 TDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEVPYLLDLH 452
Query: 383 LFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSS 442
LFL + + A E L +DGV+ GR PQ+V+D ++ I+ SS
Sbjct: 453 LFLGRALTPARPHEGSL-GVDGVL--------------GRVPQSVVDDEESGLQSILTSS 497
Query: 443 ADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK--DLPREGLHPMFKNVLEGGELMALAF 500
+L L R NA + Y +++P PS ESI+R K DL GLHP+F + E EL L
Sbjct: 498 LELGGLSRVADNAQQQYVRSRPAPSPESIKRAKELDLTGLGLHPLFSSRFEEKELQRLKL 557
Query: 501 SERLKAFRPKQTILEAEG-------EAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQ 553
+ +K +R + TI E + R+K Q + +R E
Sbjct: 558 VDSIKNYRSRATIFEINASSRDLSSQVMRAKR-QKDHKAIASFQQGRRGRQEDTAGPAPG 616
Query: 554 QRSSKSMEKEVEPEADSLMAKEIKETH----GSKRK-------AKTFKDE------EYFI 596
+S+ EK E E + K I+E G KR+ AK ++E E+++
Sbjct: 617 CPASQE-EKPEEDEEEEAAGKSIEEVFTEVMGRKRQQPGPEGGAKRRREEARHRDLEFYV 675
Query: 597 SSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKL 656
P + E GLS+ D G ++ AVLDL+ D++ L + +Q WD++ K+++
Sbjct: 676 PYRPKDFDSERGLSISGDGGAFEQQVAGAVLDLMGDEAQNLTRGRQQLKWDRKKKRFV-- 733
Query: 657 NNGERVSASGKVVKTESGAKVKAT-KTGIY-KKWKERSHKKVYLKGASNEGNAEETTSVP 714
G+ K +KTESG + ++ K +Y +KWK++ +K+ + + EE TS
Sbjct: 734 --GQSGQEDKKKIKTESGRYISSSYKRDLYYQKWKQK--QKI-----DDRDSEEEGTSHQ 784
Query: 715 GGRHLXXXXXXXXXXXXQQRS--VPNAHVCSEIKDLDQVRKERQK 757
G Q RS P V SE+K Q+ K+R++
Sbjct: 785 RGPERRGGKRGRGQGAAQPRSPGAPAGRVRSELKTKQQILKQRRR 829
>UNIPROTKB|Q8TDD1 [details] [associations]
symbol:DDX54 "ATP-dependent RNA helicase DDX54"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0003714
"transcription corepressor activity" evidence=IDA] [GO:0005102
"receptor binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0006396
"RNA processing" evidence=IDA] [GO:0016070 "RNA metabolic process"
evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0030520 "intracellular estrogen receptor signaling pathway"
evidence=TAS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003714 GO:GO:0005730
GO:GO:0006355 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
GO:GO:0030331 GO:GO:0030520 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455 OMA:FYIPYRP
EMBL:AF478457 EMBL:AC089999 EMBL:AY148094 EMBL:BC005848
IPI:IPI00152510 IPI:IPI00879999 RefSeq:NP_001104792.1
RefSeq:NP_076977.3 UniGene:Hs.506861 ProteinModelPortal:Q8TDD1
SMR:Q8TDD1 IntAct:Q8TDD1 STRING:Q8TDD1 PhosphoSite:Q8TDD1
DMDM:46576615 SWISS-2DPAGE:Q8TDD1 PaxDb:Q8TDD1 PRIDE:Q8TDD1
DNASU:79039 Ensembl:ENST00000306014 Ensembl:ENST00000314045
GeneID:79039 KEGG:hsa:79039 UCSC:uc001tup.3 UCSC:uc001tuq.4
CTD:79039 GeneCards:GC12M113595 HGNC:HGNC:20084 HPA:HPA028244
MIM:611665 neXtProt:NX_Q8TDD1 PharmGKB:PA134992026
HOVERGEN:HBG051333 InParanoid:Q8TDD1 ChiTaRS:DDX54 GenomeRNAi:79039
NextBio:67773 ArrayExpress:Q8TDD1 Bgee:Q8TDD1 CleanEx:HS_DDX54
Genevestigator:Q8TDD1 GermOnline:ENSG00000123064 Uniprot:Q8TDD1
Length = 881
Score = 1348 (479.6 bits), Expect = 1.1e-137, P = 1.1e-137
Identities = 314/772 (40%), Positives = 451/772 (58%)
Query: 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPML 82
GGF+S+ LS VF+ I +KGYKVPTPIQRKT+P+IL G DVVAMARTGSGKTA FL+PM
Sbjct: 96 GGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMF 155
Query: 83 QRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
+RL H Q G RALILSPTR+LALQTLKFTKELG++T L+ +L++GGD ME QF L +
Sbjct: 156 ERLKTHSAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHE 215
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
NPDIIIATPGRL+H E+ + L+SVEYVVFDEAD LF MGFAEQL +I+ +L QT
Sbjct: 216 NPDIIIATPGRLVHVAVEMS-LKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGHQT 274
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
+LFSATLP L EFA+AGL +P L+RLDVDTK++ LK +FF +R++ K A LL+++
Sbjct: 275 VLFSATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSFFLVREDTKAAVLLHLLHNV 334
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
+ QT++FV+TKHH E+L L + + + Y +D ARKI++++F K LIV
Sbjct: 335 VRPQDQTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKFTLGKCSTLIV 394
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLH 382
TD+AARG+DIPLLDNVIN+ FP K K+F+HRV +S V +++ YLLDLH
Sbjct: 395 TDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEIPYLLDLH 454
Query: 383 LFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSS 442
LFL + + A L + GV A + + GR PQ+V+D ++ +++S
Sbjct: 455 LFLGRSLTLA----RPLKEPSGV--------AGVDGMLGRVPQSVVDEEDSGLQSTLEAS 502
Query: 443 ADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK--DLPREGLHPMFKNVLEGGELMALAF 500
+L L R NA + Y +++P PS ESI+R K DL GLHP+F + E EL L
Sbjct: 503 LELRGLARVADNAQQQYVRSRPAPSPESIKRAKEMDLVGLGLHPLFSSRFEEEELQRLRL 562
Query: 501 SERLKAFRPKQTILEAEGE----------AARSKHL----------QGPSSQW---VDVM 537
+ +K +R + TI E A R K QG Q V
Sbjct: 563 VDSIKNYRSRATIFEINASSRDLCSQVMRAKRQKDRKAIARFQQGQQGRQEQQEGPVGPA 622
Query: 538 KKKRAVHEKIINLVHQQRSSKSMEKEVEPEADSLMAKEIKETHGSKRKAKTFK--DEEYF 595
+ A+ EK ++ + +S+E ++ E + G+KR+ + + D+E++
Sbjct: 623 PSRPALQEKQPEKEEEEEAGESVE-DIFSEVVGRKRQRSGPNRGAKRRREEARQRDQEFY 681
Query: 596 ISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIK 655
I P + E GLS+ + G + AVLDL+ D++ L + +Q WD++ K+++
Sbjct: 682 IPYRPKDFDSERGLSISGEGGAFEQQAAGAVLDLMGDEAQNLTRGRQQLKWDRKKKRFV- 740
Query: 656 LNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNAEET-TSV 713
G+ K +KTESG + ++ K +Y+KWK++ +K+ + + EG ++
Sbjct: 741 ---GQSGQEDKKKIKTESGRYISSSYKRDLYQKWKQK--QKIDDRDSDEEGASDRRGPER 795
Query: 714 PGGRHLXXXXXXXXXXXXQQRSVPNAHVCSEIKDLDQVRKERQKKADRIAFM 765
GG+ P V E+K Q+ K+R ++A ++ F+
Sbjct: 796 RGGKR----DRGQGASRPHAPGTPAGRVRPELKTKQQILKQR-RRAQKLHFL 842
>DICTYBASE|DDB_G0292992 [details] [associations]
symbol:helA "putative RNA helicase" species:44689
"Dictyostelium discoideum" [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0292992 GO:GO:0005524
GenomeReviews:CM000155_GR GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AAFI02000199 KO:K14808 HSSP:P10081 EMBL:X81822
RefSeq:XP_629281.1 ProteinModelPortal:Q54CD8 STRING:Q54CD8
EnsemblProtists:DDB0215372 GeneID:8629004 KEGG:ddi:DDB_G0292992
OMA:RLPKDGH ProtClustDB:CLSZ2429315 Uniprot:Q54CD8
Length = 1091
Score = 780 (279.6 bits), Expect = 5.7e-135, Sum P(3) = 5.7e-135
Identities = 153/246 (62%), Positives = 192/246 (78%)
Query: 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPML 82
GGF+S++L+ N+ +AI +KG+ VPTPIQRK++P+IL G D+V MARTGSGKT AF++PM+
Sbjct: 230 GGFQSMDLTKNLLKAILKKGFNVPTPIQRKSIPMILDGHDIVGMARTGSGKTGAFVIPMI 289
Query: 83 QRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
Q+L H GVRA+ILSPTR+LA+QT K K+ + T LR L+VGGDSME QF +LA+
Sbjct: 290 QKLGDHSTTVGVRAVILSPTRELAIQTFKVVKDFSQGTQLRTILIVGGDSMEDQFTDLAR 349
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
NPDIIIATPGRLMHHL E MSL V+Y+VFDEAD LF MGF EQL +IL +LSENRQT
Sbjct: 350 NPDIIIATPGRLMHHLLET-GMSLSKVQYIVFDEADRLFEMGFNEQLTEILSKLSENRQT 408
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
LLFSATLPS L +F +AGL +P L+ LD DTKIS +L L+FFTLR EEK LL+++++
Sbjct: 409 LLFSATLPSLLVDFVRAGLNNPKLINLDTDTKISENLSLSFFTLRHEEKLGVLLFLLKDI 468
Query: 263 ISSDQQ 268
I Q
Sbjct: 469 IYKKPQ 474
Score = 448 (162.8 bits), Expect = 5.7e-135, Sum P(3) = 5.7e-135
Identities = 101/260 (38%), Positives = 152/260 (58%)
Query: 269 TLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAAR 328
T+IFVSTK+HVEF+++L G+ + +G +D ARKI++++FR+ + ++VTD+AAR
Sbjct: 500 TIIFVSTKYHVEFIHILLERAGIASTYIHGYLDPVARKINLAKFRSHQVGVMVVTDLAAR 559
Query: 329 GIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHLFLSKP 388
GIDIPLLDNVIN+DFPPK KIF+HRV +S V+ +++ Y++DLHL+L +
Sbjct: 560 GIDIPLLDNVINFDFPPKEKIFIHRVGRVARAGRSGIAYSLVSPDEVPYMIDLHLYLGRK 619
Query: 389 IRAAPSEEEVLLDMDGVMSKIDQAIANGE-TIYGRFPQTVIDLVSDRVREIIDSSADLNS 447
+G Q I + + + YG PQT+ID ++ V +L S
Sbjct: 620 FLNK-------FQYEG------QTINDPKYSFYGTIPQTIIDRETEFVNVQRKECIELLS 666
Query: 448 LQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVLEGGELMALAFSERLKAF 507
L +T NA + Y T+P S ES RR K + + HPM + L + + F + LK+F
Sbjct: 667 LTKTIHNAHKKYLSTRPGASHESNRRAKLMDKSKYHPMLSDHLNSNDQIRNDFIQSLKSF 726
Query: 508 RPKQTILEAEGEAARSKHLQ 527
RP QT+LE + AR ++Q
Sbjct: 727 RPPQTVLELD---ARKNNVQ 743
Score = 202 (76.2 bits), Expect = 2.1e-99, Sum P(3) = 2.1e-99
Identities = 66/260 (25%), Positives = 122/260 (46%)
Query: 418 TIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDL 477
+ YG PQT+ID ++ V +L SL +T NA + Y T+P S ES RR K +
Sbjct: 637 SFYGTIPQTIIDRETEFVNVQRKECIELLSLTKTIHNAHKKYLSTRPGASHESNRRAKLM 696
Query: 478 PREGLHPMFKNVLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVM 537
+ HPM + L + + F + LK+FRP QT+LE + AR ++Q V +M
Sbjct: 697 DKSKYHPMLSDHLNSNDQIRNDFIQSLKSFRPPQTVLELD---ARKNNVQ------VSIM 747
Query: 538 KKKRAVHEKIINLVHQQRSSKSMEKEVEPEADSLMAKEIKETHGSKRKAKTFKD-EEYFI 596
K KR VH +I ++ + E + PE + ++ +T KR + ++ E +
Sbjct: 748 KDKRKVHTNVIESQQKKLYLQQSETNLGPENEEFDYSKL-DTR--KRLLQLTENITEEML 804
Query: 597 SSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKL 656
S +N + + ++ ++ N + + D+ +K + + + K IK+
Sbjct: 805 RSNKSNDNNDNNKDIKMNENDDENDDDDEEGENDDDEEEENEKDEDDEEDENKNKFNIKI 864
Query: 657 NNGERVSASGKVVKTESGAK 676
+ ++ + K +K+ S ++
Sbjct: 865 ESSDKNDNNKKKLKSRSSSR 884
Score = 130 (50.8 bits), Expect = 5.7e-135, Sum P(3) = 5.7e-135
Identities = 54/213 (25%), Positives = 92/213 (43%)
Query: 561 EKEVEPEADSLMAK-EIK-----ETHGSKRKAKT---FKDEEYFISSVPTNHHMEAGLSV 611
EK+ + E D K IK + +K+K K+ +D +FIS+ P N E +S+
Sbjct: 846 EKDEDDEEDENKNKFNIKIESSDKNDNNKKKLKSRSSSRDPNFFISATPENLIQERAMSI 905
Query: 612 RSDQGFGLNRL-EAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVK 670
NR + ++LVAD +KQK+ WDKR K++ S K+V+
Sbjct: 906 S-------NRFTKDDEVNLVADTD---RKQKKSMVWDKRKGKFVSSQADADRKNSKKLVR 955
Query: 671 TESGAKVKATKTGI-YKKWKERSHKKVYLKGASNEGNAEETTSVPGGRHLXXXXXXXXXX 729
E+G V+A K+ Y++WK+++H ++ G + +
Sbjct: 956 NEAGKLVEAKKSHKGYEEWKKKTHGRIQRVGEDENSKYQPNQKEYLPQKWRGQGREKEKK 1015
Query: 730 XXQQRSVPNAHVC----SEIKDLDQVRKERQKK 758
+ +H SE+KD +Q+ K R +K
Sbjct: 1016 DNKASHAKGSHGLKGRPSELKDKNQISKNRSEK 1048
Score = 38 (18.4 bits), Expect = 2.8e-125, Sum P(3) = 2.8e-125
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 689 KERSHKKVYLKGASNEGNAEETTSVPGG 716
K RS K+ ++ +GN + + S GG
Sbjct: 1043 KNRSEKERKMRVNKTKGNPKGSKSKSGG 1070
Score = 38 (18.4 bits), Expect = 3.4e-10, Sum P(3) = 3.4e-10
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLE-PSVCYGDMDQD-ARKIHVSRFRAR 315
I +S ++QTL+F +T + L V F GL P + D D + + +S F R
Sbjct: 398 ILSKLSENRQTLLFSAT---LPSLLVDFVRAGLNNPKLINLDTDTKISENLSLSFFTLR 453
>ASPGD|ASPL0000054300 [details] [associations]
symbol:AN0583 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 EMBL:BN001308 EMBL:AACD01000007 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14808 RefSeq:XP_658187.1 ProteinModelPortal:Q5BFU7
STRING:Q5BFU7 EnsemblFungi:CADANIAT00002094 GeneID:2876361
KEGG:ani:AN0583.2 HOGENOM:HOG000246455 OMA:HLKVEMN
OrthoDB:EOG4JWZP1 Uniprot:Q5BFU7
Length = 936
Score = 746 (267.7 bits), Expect = 3.4e-133, Sum P(4) = 3.4e-133
Identities = 148/241 (61%), Positives = 189/241 (78%)
Query: 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPML 82
GGF+++ L+ N+ +AI RKG+ VPTPIQRKT+P+I+ DVV MARTGSGKTAAF++PM+
Sbjct: 91 GGFQAMGLNANLLKAIARKGFSVPTPIQRKTIPVIMEDQDVVGMARTGSGKTAAFVIPMI 150
Query: 83 QRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
++L H + G R LILSP+R+LALQTLK KELG+ TDL+ LLVGGDS+E QF +A
Sbjct: 151 EKLKSHSTKFGARGLILSPSRELALQTLKVVKELGKGTDLKSVLLVGGDSLEEQFGMMAG 210
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
NPDI+IATPGR +H E+ ++ L S++YVVFDEAD LF MGFA QL +IL L RQT
Sbjct: 211 NPDIVIATPGRFLHLKVEM-NLDLSSIKYVVFDEADRLFEMGFAAQLTEILHGLPSTRQT 269
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
LLFSATLP +L EFA+AGL+DP LVRLD ++KISPDL+ AFF+++ EK ALLY++ E
Sbjct: 270 LLFSATLPKSLVEFARAGLQDPTLVRLDTESKISPDLQNAFFSVKSAEKEGALLYILNEV 329
Query: 263 I 263
I
Sbjct: 330 I 330
Score = 398 (145.2 bits), Expect = 3.4e-133, Sum P(4) = 3.4e-133
Identities = 99/281 (35%), Positives = 141/281 (50%)
Query: 269 TLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAAR 328
T++F +TKHHV++L L RE G S YG +DQ ARKI V FR + L+VTDVAAR
Sbjct: 376 TIVFAATKHHVDYLYSLLREAGFAVSYVYGSLDQTARKIQVQNFRTGISNILVVTDVAAR 435
Query: 329 GIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHLFLSKP 388
GIDIP+L NVIN+DFP +PKIFVHRV +S V D YLLDL LFL +
Sbjct: 436 GIDIPILANVINYDFPSQPKIFVHRVGRTARAGRKGWSYSLVRDADAPYLLDLQLFLGRK 495
Query: 389 IRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSL 448
+ VL G S DQ + G P+ + + V ++D AD+ +
Sbjct: 496 L--------VL----GRES--DQVNFAEDVAVGSLPRDGLSQTCEWVSRVLDDDADIFAQ 541
Query: 449 QRTCTNAFRLYSKTKPLPSKESIRRGKDLPRE----GLHPMFKNVLEGGELMALAFSERL 504
+ T +LY +T+ S ES +R K + +HP+F++ E R+
Sbjct: 542 RAVSTKGEKLYLRTRNAASAESAKRAKQVVTSDNWTAVHPLFQDEASNLEAEREKMLARI 601
Query: 505 KAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHE 545
+RP++TI E + + +D +K+ R+ E
Sbjct: 602 GGYRPQETIFEVQNRRGGKGGKASEPDEALDSIKRVRSTLE 642
Score = 163 (62.4 bits), Expect = 3.4e-133, Sum P(4) = 3.4e-133
Identities = 39/107 (36%), Positives = 57/107 (53%)
Query: 589 FKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEA---AVLDLVADDSG-GLQKQKQVY 644
F++ EYF+S P N + + G N A A +DL AD+ G G + + +
Sbjct: 722 FQNPEYFMSYTPANTSLAEDRAYGVHSGTNANFASATRNATMDLQADEGGKGFGEPRTLM 781
Query: 645 HWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKE 690
WDKR KKY+ N E S K+V+ ESGAK+ AT ++G + WK+
Sbjct: 782 RWDKRHKKYVSRQNDEDGSKGTKLVRGESGAKIAATFRSGRFDAWKK 828
Score = 116 (45.9 bits), Expect = 1.3e-103, Sum P(4) = 1.3e-103
Identities = 46/208 (22%), Positives = 89/208 (42%)
Query: 410 DQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKE 469
DQ + G P+ + + V ++D AD+ + + T +LY +T+ S E
Sbjct: 503 DQVNFAEDVAVGSLPRDGLSQTCEWVSRVLDDDADIFAQRAVSTKGEKLYLRTRNAASAE 562
Query: 470 SIRRGKDLPRE----GLHPMFKNVLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKH 525
S +R K + +HP+F++ E R+ +RP++TI E + R
Sbjct: 563 SAKRAKQVVTSDNWTAVHPLFQDEASNLEAEREKMLARIGGYRPQETIFEVQN---RRGG 619
Query: 526 LQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKSMEKEVEPEADSLMAKEIKETHGSKRK 585
G +S+ ++ ++ + + RS+ +K+ +A+ L A T G++
Sbjct: 620 KGGKASE-----------PDEALDSIKRVRSTLEAKKKQRAQAEELEATT--NTDGAEVD 666
Query: 586 AKTFKDEEYFISSVPTNHHM--EAGLSV 611
F D E +++P N + E+ L V
Sbjct: 667 GDAFSDLEGDNANIPDNMSLASESDLEV 694
Score = 45 (20.9 bits), Expect = 3.4e-133, Sum P(4) = 3.4e-133
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 743 SEIKDLDQVRKERQKKADR 761
SEI++ D +RK R+ K R
Sbjct: 907 SEIRNTDDIRKARKLKQKR 925
Score = 42 (19.8 bits), Expect = 9.2e-80, Sum P(3) = 9.2e-80
Identities = 20/73 (27%), Positives = 32/73 (43%)
Query: 562 KEVEPEADSLMAKEIKETHGSKRKAKTFKDEEYFISSV---PTNHHMEAGLSVRSDQGFG 618
KE PE DS K K +A K+ S++ T HH++ S+ + GF
Sbjct: 344 KEKGPE-DS---KNKKRKRAEMERAVNMKESPTKHSTIVFAATKHHVDYLYSLLREAGFA 399
Query: 619 LNRLEAAVLDLVA 631
++ + + LD A
Sbjct: 400 VSYVYGS-LDQTA 411
Score = 42 (19.8 bits), Expect = 2.0e-46, Sum P(4) = 2.0e-46
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 253 AALLYMIREHISSDQQTLIFVST--KHHVEF 281
AA L I + S +QTL+F +T K VEF
Sbjct: 253 AAQLTEILHGLPSTRQTLLFSATLPKSLVEF 283
>POMBASE|SPAC31A2.07c [details] [associations]
symbol:dbp10 "ATP-dependent RNA helicase Dbp10
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPAC31A2.07c
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 InterPro:IPR014014
PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455 OrthoDB:EOG4JWZP1
EMBL:AB027882 PIR:S59645 RefSeq:NP_592919.1
ProteinModelPortal:Q09719 STRING:Q09719 EnsemblFungi:SPAC31A2.07c.1
GeneID:2543197 KEGG:spo:SPAC31A2.07c OMA:FYIPYRP NextBio:20804220
Uniprot:Q09719
Length = 848
Score = 681 (244.8 bits), Expect = 1.6e-128, Sum P(2) = 1.6e-128
Identities = 137/239 (57%), Positives = 180/239 (75%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+S+ L+ + RAI +KG+K PTPIQRKT+PL+L G DVV MARTGSGKTAAF++PM++
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L + RALILSP R+LALQT+K K+ + TDLR +VGG S+E QF L+ P
Sbjct: 131 LKSTLANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSGKP 190
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
DI++ATPGR +H E++ + L S+EYVVFDEAD LF MGFA QL +IL L +RQTLL
Sbjct: 191 DIVVATPGRFLHLKVEMK-LELSSIEYVVFDEADRLFEMGFAAQLTEILHALPTSRQTLL 249
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
FSATLP L +FAKAGL+DP LVRLDV++K+S DL+ AFF+++ E+ AALL ++++ I
Sbjct: 250 FSATLPRTLVDFAKAGLQDPVLVRLDVESKVSADLQSAFFSVKTAEREAALLCILQDII 308
Score = 601 (216.6 bits), Expect = 1.6e-128, Sum P(2) = 1.6e-128
Identities = 177/585 (30%), Positives = 290/585 (49%)
Query: 195 QLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAA 254
++S + Q+ FS A L+D +++L + + P ++ ++ K A
Sbjct: 279 KVSADLQSAFFSVKTAEREAALLCI-LQD--IIKLPLKDNVRPR-EIGNVNNPKKRKRAL 334
Query: 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRA 314
L + S TL+FV TKHHVE+++ L + G S YG +DQ+AR ++ FR
Sbjct: 335 ELALKGSESGSPDSTLVFVPTKHHVEYVSELLVQAGYSVSKIYGSLDQEARLNEINNFRL 394
Query: 315 RKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSED 374
KT L+VTDVA+RGIDIPLL NVIN+DFPP+PK+FVHRV +S V +ED
Sbjct: 395 GKTNLLVVTDVASRGIDIPLLANVINYDFPPQPKVFVHRVGRTARAGRTGWAYSLVRAED 454
Query: 375 MAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDR 434
YLLDL LFL++P+ S ++V D D +K + + G PQ ++ + +
Sbjct: 455 AGYLLDLQLFLNRPL--VTSSKQVKTDSDCDFTK--------QIVLGSLPQELVAELLEW 504
Query: 435 VREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDL-PREGL---HPMFKNV- 489
V+ I+ +L L +LY +T+ S ES +R K+L +G +P+F +V
Sbjct: 505 VQRIVSRDVELQQLSNVAARGEKLYFRTRATCSAESAKRAKELVDSKGWSSNNPLFGDVS 564
Query: 490 -LEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKR-AVHEK- 546
+E E A S ++ ++RP +T+ E G+ HL+ ++ ++M+K+R V K
Sbjct: 565 VIEAEEKYAELLS-KVSSYRPSETVFEI-GQRG---HLK---TEAAEIMRKRRNKVKPKG 616
Query: 547 IINLVHQQRSSKSMEKEVEPEADSLMAKEIKETHG-SKRKAKTFKDEEYFISS-VPTNHH 604
I + V + + S + ++S + + K SK+K FKD+EY++S P
Sbjct: 617 IKSEVASDKITDSSPGNMSEASESELEEVFKNPKELSKKKTTDFKDKEYYMSHYAPKESI 676
Query: 605 MEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVS- 663
E G ++ S + F A+LDL +D G Q +K WD + KK++ + N E S
Sbjct: 677 QETGYAINSGENF-TTAARHAILDLT-NDEGIEQSRKGGQRWDPKKKKFVNIINDEDGSK 734
Query: 664 ASGKVVKTESGAKVKAT-KTGIYKKWKER----SHKKVYLKGASNEGNAEETTSVPGGRH 718
S K+++ ESG K+ AT ++G + +WK ++ + + N +T
Sbjct: 735 GSPKIIRGESGVKLPATYRSGRFDEWKASKAFGANDSPIRENKRYKHNKLQTPKPADKFR 794
Query: 719 LXXXXXXXXXXXXQQRSVPNAHVCSEIKDLDQVRKERQKKADRIA 763
++R + V SE+K ++RK R+ K R+A
Sbjct: 795 DNYHKQNKRNREAKERGI-GIKVNSELKSAVEIRKARELKEKRLA 838
>WB|WBGene00022378 [details] [associations]
symbol:Y94H6A.5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0040010 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455
OMA:FYIPYRP GeneTree:ENSGT00550000075100 EMBL:FO081810
GeneID:177054 KEGG:cel:CELE_Y94H6A.5 UCSC:Y94H6A.5a CTD:177054
NextBio:895136 RefSeq:NP_741347.2 ProteinModelPortal:Q688Z4
SMR:Q688Z4 STRING:Q688Z4 PRIDE:Q688Z4 EnsemblMetazoa:Y94H6A.5b
WormBase:Y94H6A.5b InParanoid:Q688Z4 ArrayExpress:Q688Z4
Uniprot:Q688Z4
Length = 871
Score = 1189 (423.6 bits), Expect = 7.4e-121, P = 7.4e-121
Identities = 282/724 (38%), Positives = 418/724 (57%)
Query: 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPML 82
GG++ + L +V++AI++KG+ PTPIQRKT+P I+ G DVVAM+RTGSGKTAAF++PML
Sbjct: 24 GGWQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKTAAFVIPML 83
Query: 83 QRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
Q+L + G+RAL++SPTR+LALQT K KELGR+T LR + LVGGD +E QF + +
Sbjct: 84 QKLKRR-DTTGIRALMVSPTRELALQTFKVVKELGRFTGLRCACLVGGDQIEEQFSTIHE 142
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
NPDI++ATPGRL+H + E+ D+ L V+YVVFDEAD LF MGF +QL + L ++ E+RQT
Sbjct: 143 NPDILLATPGRLLHVIVEM-DLRLSYVQYVVFDEADRLFEMGFQDQLTETLKRIPESRQT 201
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
LLFSATLP L +FAKAGL DP LVRLDVD K+S L + F R +EK ALL++ R
Sbjct: 202 LLFSATLPKMLVDFAKAGLTDPMLVRLDVDEKVSDKLSMVFCMCRPDEKLFALLHLCRRM 261
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
++QT++F +T HVE++ + G++ S Y +D ARK+++ +F ++ L+V
Sbjct: 262 DRENKQTVVFCATMKHVEYVVGILHRAGIDCSFVYSQLDATARKMNIQKFHEKQNNILVV 321
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLH 382
TDVAARG+DIPLLD VIN FPPK K+FVHRV S + ++++ YL DL
Sbjct: 322 TDVAARGVDIPLLDTVINLHFPPKAKLFVHRVGRVARAGRSGTAISLIANDELPYLTDLF 381
Query: 383 LFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSS 442
+FL KPI A + E D ET+ GR P +++ L ++ I D++
Sbjct: 382 MFLGKPINFASDKSEYKED---------------ETLIGRVPDSIVSLETEFFHSIHDNN 426
Query: 443 ADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK-DLPREGL----HPMFKNVLEGGELMA 497
D+ L++ TNA Y++T+P PS ES RR K D+ + + HP K G+ +
Sbjct: 427 EDMQDLRQKATNAMMKYTRTRPPPSAESARRVKQDIRTDSVECAPHPFLK---ADGDKQS 483
Query: 498 LAFSERLKAFRPKQTILE----------AEGEAARSKHLQGPSSQWVDVMKKKRAVHEKI 547
++ ++ + TI E A +A R H S+ + K+K ++
Sbjct: 484 NDILNKISQYKSRNTIFEMNKSQKSQALAVMQAKRKAHEPRISTVTEEKRKQKEEKEQQQ 543
Query: 548 INL-VHQQRSSKSMEKEVEPEADSLMAKEIKET-H--------GSKRKAKTFK--DEEYF 595
+ + + + K++E E E + I T H G KRK T K D
Sbjct: 544 KSTDIAVEIAEKTVENAGEDELAEVFGTVIGSTKHTEKSEEKGGKKRKIGTGKRIDRAEQ 603
Query: 596 ISSVPTNHHMEAGLSVR-SDQGFGLNRL------EAAVLDLVADDSGGLQKQKQVYHWDK 648
+ H++ S +++ L+ + E A +D++ DD G+ +QK WD+
Sbjct: 604 MKFEREKHYVPYMSSDHVAERHLALDTVDFARQAEGASVDIIMDDDRGMYQQKHGQRWDR 663
Query: 649 RGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLK---GASNE 704
R KKY+ L+ G + K ++TE G + A+ KTG Y+ WK++ +K+ K G ++
Sbjct: 664 RLKKYVGLSGGNE--PANKKIRTEDGTWLPASYKTGKYEDWKQK--QKIGFKKSDGGGDD 719
Query: 705 GNAE 708
G+ E
Sbjct: 720 GDNE 723
Score = 174 (66.3 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 74/308 (24%), Positives = 135/308 (43%)
Query: 417 ETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK- 475
ET+ GR P +++ L ++ I D++ D+ L++ TNA Y++T+P PS ES RR K
Sbjct: 401 ETLIGRVPDSIVSLETEFFHSIHDNNEDMQDLRQKATNAMMKYTRTRPPPSAESARRVKQ 460
Query: 476 DLPREGL----HPMFKNVLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSS 531
D+ + + HP K G+ + ++ ++ + TI E + S
Sbjct: 461 DIRTDSVECAPHPFLK---ADGDKQSNDILNKISQYKSRNTIFEMN---------KSQKS 508
Query: 532 QWVDVMKKKRAVHEKIINLVHQQRSSKSMEKEVEPEADSLMAKEIKETHGSKRKAKTFKD 591
Q + VM+ KR HE I+ V +++ + EKE + ++ + A EI E K +D
Sbjct: 509 QALAVMQAKRKAHEPRISTVTEEKRKQKEEKEQQQKSTDI-AVEIAE----KTVENAGED 563
Query: 592 E--EYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHW--- 646
E E F + + + H E +S++ G R + + +++K +
Sbjct: 564 ELAEVFGTVIGSTKHTE-----KSEEKGGKKRKIGTGKRIDRAEQMKFEREKHYVPYMSS 618
Query: 647 DKRGKKYIKLNNGERV-SASGKVVKT--ESGAKVKATKTGIYKKWKERSHKKVYLKGASN 703
D ++++ L+ + A G V + + K G ++W R K V L G +
Sbjct: 619 DHVAERHLALDTVDFARQAEGASVDIIMDDDRGMYQQKHG--QRWDRRLKKYVGLSGGNE 676
Query: 704 EGNAEETT 711
N + T
Sbjct: 677 PANKKIRT 684
>CGD|CAL0003464 [details] [associations]
symbol:orf19.5991 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IEA] [GO:0000466 "maturation of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0000463 "maturation of LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
CGD:CAL0003464 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AACQ01000003
EMBL:AACQ01000004 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_723054.1
RefSeq:XP_723201.1 STRING:Q5ANB2 GeneID:3635229 GeneID:3635325
KEGG:cal:CaO19.13412 KEGG:cal:CaO19.5991 KO:K14808 Uniprot:Q5ANB2
Length = 908
Score = 678 (243.7 bits), Expect = 8.7e-115, Sum P(2) = 8.7e-115
Identities = 135/241 (56%), Positives = 180/241 (74%)
Query: 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPML 82
G F S L+ + I +KGYK PTPIQRKT+PLI+ G DVV MARTGSGKTAAF++P++
Sbjct: 99 GSFASFGLTKFILANIAKKGYKQPTPIQRKTIPLIMEGRDVVGMARTGSGKTAAFVLPLI 158
Query: 83 QRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
+RL P GGVRA+ILSP+R+LALQT K KE T+L+ +L+GGDS+E F ++
Sbjct: 159 ERLKSRQP-GGVRAVILSPSRELALQTYKQVKEFSHGTNLQSIVLIGGDSLEEDFSKMMT 217
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
PDII+ TPGR +H E++ L +V+Y+VFDEAD LF MGFAEQL+++L L NRQ+
Sbjct: 218 KPDIIVCTPGRFLHLKVEMQ-YDLMTVQYIVFDEADRLFEMGFAEQLNELLASLPSNRQS 276
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
LLFSATLP +L +FAKAGL +P LVRLD ++KIS L++A+FT ++ E+ A LLY+++E
Sbjct: 277 LLFSATLPRSLVDFAKAGLTNPVLVRLDAESKISDQLQMAYFTTKKNEREANLLYILQEV 336
Query: 263 I 263
I
Sbjct: 337 I 337
Score = 474 (171.9 bits), Expect = 8.7e-115, Sum P(2) = 8.7e-115
Identities = 129/442 (29%), Positives = 218/442 (49%)
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
+ S T++FV TKHHVE++ L R+ G S YG +DQ ARK + +FR T L+V
Sbjct: 391 LPSPHSTIVFVPTKHHVEYVTKLLRDAGYLVSYIYGTLDQHARKNQLYQFRVGLTNVLVV 450
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLH 382
TDVAARGIDIP+L NVIN+ P KIF+HRV +S V +++ YLLDL
Sbjct: 451 TDVAARGIDIPVLANVINFTLPASSKIFIHRVGRTARAGNKGWAYSIVNEKELPYLLDLE 510
Query: 383 LFLSKPIRAAPSEE-EV-LLDMDGVMSKIDQAIANGET-IYGRFPQTVIDLVSDRVREII 439
LFL K I E +V +L + I + E + G P+ ++ + ++
Sbjct: 511 LFLGKKILLTSMHEAKVEMLKKSSTGTFIPPVVNYTERLVLGSVPRVDLETFQELYENLL 570
Query: 440 DSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVLEGGELMALA 499
++ ++ L+ +LY +T+ S+ES++R K++ E E A
Sbjct: 571 RNNYEIKVLKDVAAKGEKLYHRTRQPASQESLKRSKEIIESSWDDQHLLFGENLEKQKDA 630
Query: 500 FSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKS 559
F +L+ KQT+ E +G + + +++K ++++ +
Sbjct: 631 FLAKLQDRNSKQTVFELKGSDESLVEFMNRRRRQLAPIQRKAKERKELLAKERLAGLTHG 690
Query: 560 MEKEV-EPEADS---LMAKEIKETHGSKRKAKTFKDEEYFISS-VPTNHHMEAGLSVRSD 614
+E E+ + ++ + E++E K K+F+D ++F+S P + + LS+ +
Sbjct: 691 IEDEILRADGENGYGVDEDELQEAFEDADKKKSFRDPQFFLSHYAPASVIQDQQLSLSTS 750
Query: 615 QGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESG 674
F N +AA DL DD +Q KQV WDK+ KYI N + S K + +E+G
Sbjct: 751 --FA-NEAQAATFDLDNDDK--IQTNKQVMRWDKKKGKYI---NSK--STDKKYIISENG 800
Query: 675 AKVKAT-KTGIYKKWKERSHKK 695
K+ A+ ++G + +W+++ + K
Sbjct: 801 TKIPASFRSGKFDEWRKQRNLK 822
Score = 37 (18.1 bits), Expect = 1.1e-68, Sum P(2) = 1.1e-68
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 464 PLPSKESIRRGKDLPR 479
PL S+E I++ KD+ +
Sbjct: 340 PLGSEEQIKKLKDMDK 355
>FB|FBgn0052344 [details] [associations]
symbol:CG32344 species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:AE014296
GO:GO:0022008 GO:GO:0006200 GO:GO:0003723 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14808
GeneTree:ENSGT00550000075100 HSSP:P10081 EMBL:AY075397
RefSeq:NP_612028.4 UniGene:Dm.796 SMR:Q8SY39 IntAct:Q8SY39
STRING:Q8SY39 EnsemblMetazoa:FBtr0072576 GeneID:326208
KEGG:dme:Dmel_CG32344 UCSC:CG32344-RA FlyBase:FBgn0052344
InParanoid:Q8SY39 OMA:NANDEMS OrthoDB:EOG40CFZ4 GenomeRNAi:326208
NextBio:847633 Uniprot:Q8SY39
Length = 827
Score = 1079 (384.9 bits), Expect = 3.4e-109, P = 3.4e-109
Identities = 274/725 (37%), Positives = 408/725 (56%)
Query: 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPML 82
GGF+S+ L + + I ++GYKVPTPIQRKT+PLIL G DVVAMA+TGSGKTA FL+P+
Sbjct: 39 GGFQSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLF 98
Query: 83 QRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
++L + P G RALILSPTR+LA+QT KF KELGR+ +L+ L++GGDSM+SQF +
Sbjct: 99 EKLQRREPTKGARALILSPTRELAVQTYKFIKELGRFMELKSILVLGGDSMDSQFSAIHT 158
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
PD+I+ATPGR +H E+ D+ L S+EYVVFDEAD LF MGF EQL++ L +L +RQT
Sbjct: 159 CPDVIVATPGRFLHLCVEM-DLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLPSSRQT 217
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
++FSATLP L EFA+AGL DP L+RLDV++K+ L L F R ++++ AL+ +++
Sbjct: 218 VMFSATLPKLLVEFARAGLNDPVLIRLDVESKLPDALALKFLYCRPDDRYTALVVLLKYV 277
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
I QT++F T+HHVE ++ + E G+ + Y +D ARKI+ ++F +K LIV
Sbjct: 278 IPVQSQTVVFAGTQHHVELISYILTEAGISNASVYSSLDPAARKINTAKFVNKKVSVLIV 337
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLH 382
TDVAARGIDIP LD V+N FP KPK+FVHRV +S V+++D A+LLDLH
Sbjct: 338 TDVAARGIDIPSLDFVVNLHFPGKPKLFVHRVGRCARAGRTGTAYSIVSTDDTAHLLDLH 397
Query: 383 LFLSKPIRAAPS-----------EEEVLLDMDGVMSK-IDQAIANGETIYGRFPQTVIDL 430
LFL++P S EEE L D S I + E Y ++
Sbjct: 398 LFLNRPFNIHDSSALGTIPQDLLEEEHLTVTDIKKSHHIAGVLRTSENAYKKY------- 450
Query: 431 VSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVL 490
+S R D++A + ++ + P+ ++ + G+ + + L
Sbjct: 451 LSSRPVASTDANARVKKIKFFALKPLEDFFTAAPVLAQAAEASGQSTESQAKVSAAERKL 510
Query: 491 EGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINL 550
+ + L ++++FRP T+ E K S+Q++ VMK+KR H ++IN
Sbjct: 511 QEEKHDILV---KMRSFRPGGTVFELN---TTQK-----STQFI-VMKEKRMQHAEVINK 558
Query: 551 VHQQRSSKSMEKE---VE---------PEADS-LMAKEIKETHGSKRKAKT---FKDE-- 592
QQR+ + +++E +E P AD ++ + KR +KD+
Sbjct: 559 FRQQRAEEDIDEEKKTIEALNPSSGRMPTADEEAISSTFNKVVAPKRLQNMDALYKDKPK 618
Query: 593 --EYFISSVPTNHHME-AGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKR 649
+ I+S +H++ ++ G +N E + S Q +V H K
Sbjct: 619 KKKRKINSKDEDHYVPYQSADKHTEDGLAINNFERQAQNAEFSVSDRDLSQ-EVKH--KP 675
Query: 650 G-KKYIKLNNGERVSAS---GKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNE 704
G KK+ ++ + VS ++TESGA + A+ KTG Y +WKE+S + L+ N
Sbjct: 676 GLKKWDRIKK-KMVSVQDPRANKIRTESGAWIPASFKTGRYAEWKEKSKIEDQLQ-RENA 733
Query: 705 GNAEE 709
G+ +E
Sbjct: 734 GSDDE 738
>SGD|S000002189 [details] [associations]
symbol:DBP10 "Putative ATP-dependent RNA helicase of the
DEAD-box protein family" species:4932 "Saccharomyces cerevisiae"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0030687 "preribosome, large subunit precursor"
evidence=IGI;IPI] [GO:0000463 "maturation of LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000466 "maturation of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000002189
GO:GO:0005524 GO:GO:0005730 EMBL:BK006938 GO:GO:0003723
GO:GO:0030687 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:Z71781 GO:GO:0000463 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455
OMA:HLKVEMN OrthoDB:EOG4JWZP1 EMBL:Z74079 PIR:S67564
RefSeq:NP_010253.2 ProteinModelPortal:Q12389 SMR:Q12389
DIP:DIP-6387N IntAct:Q12389 MINT:MINT-613064 STRING:Q12389
PaxDb:Q12389 PeptideAtlas:Q12389 EnsemblFungi:YDL031W GeneID:851530
KEGG:sce:YDL031W CYGD:YDL031w GeneTree:ENSGT00550000075100
NextBio:968920 Genevestigator:Q12389 GermOnline:YDL031W
GO:GO:0000466 Uniprot:Q12389
Length = 995
Score = 675 (242.7 bits), Expect = 1.2e-105, Sum P(3) = 1.2e-105
Identities = 136/241 (56%), Positives = 178/241 (73%)
Query: 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPML 82
G F S LS V IKRKG++ PTPIQRKT+PLIL D+V MARTGSGKTAAF++PM+
Sbjct: 137 GSFPSFGLSKIVLNNIKRKGFRQPTPIQRKTIPLILQSRDIVGMARTGSGKTAAFILPMV 196
Query: 83 QRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
++L H + G RA+ILSP+R+LA+QT K+ R T+LR LL GGDS+E QF +
Sbjct: 197 EKLKSHSGKIGARAVILSPSRELAMQTFNVFKDFARGTELRSVLLTGGDSLEEQFGMMMT 256
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
NPD+IIATPGR +H E+ ++ LKSVEYVVFDEAD LF MGF EQL+++L L RQT
Sbjct: 257 NPDVIIATPGRFLHLKVEM-NLDLKSVEYVVFDEADRLFEMGFQEQLNELLASLPTTRQT 315
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
LLFSATLP++L +F KAGL +P LVRLD +TK+S +L++ F + + ++ A LLY+++E
Sbjct: 316 LLFSATLPNSLVDFVKAGLVNPVLVRLDAETKVSENLEMLFLSSKNADREANLLYILQEI 375
Query: 263 I 263
I
Sbjct: 376 I 376
Score = 373 (136.4 bits), Expect = 1.2e-105, Sum P(3) = 1.2e-105
Identities = 131/462 (28%), Positives = 209/462 (45%)
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
+ S++ T++FV T+HHVE+++ L R+ G S YG +DQ ARK + FRA T L+V
Sbjct: 429 LPSEKATILFVPTRHHVEYISQLLRDCGYLISYIYGTLDQHARKRQLYNFRAGLTSILVV 488
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLH 382
TDVAARG+DIP+L NVIN+ P KIFVHRV +S V ++ YLLDL
Sbjct: 489 TDVAARGVDIPMLANVINYTLPGSSKIFVHRVGRTARAGNKGWAYSIVAENELPYLLDLE 548
Query: 383 LFLSKPIRAAPSEEEVLLDMDGVMSK--IDQAIANGE-----------TIYGRFPQTVID 429
LFL K I P + L+D VM K ID+ + + G P+ ++
Sbjct: 549 LFLGKKILLTPMYDS-LVD---VMKKRWIDEGKPEYQFQPPKLSYTKRLVLGSCPRLDVE 604
Query: 430 LVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNV 489
+ D + ++ S+ DL ++T A +LY +T+ S ES++R K++ G
Sbjct: 605 GLGDLYKNLMSSNFDLQLAKKTAMKAEKLYYRTRTSASPESLKRSKEIISSGWDAQNAFF 664
Query: 490 LEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIIN 549
+ E L F +L+ R K+T+ E + P + MK++R I
Sbjct: 665 GKNEEKEKLDFLAKLQNRRNKETVFE---------FTRNPDDEMAVFMKRRRKQLAPIQR 715
Query: 550 LVHQQRSSKSMEKE-VEPEADSLMAKEIKETHG------SKRKAKTFKDEEYFISSVPTN 602
++R + +EKE + + S+ + +K G S+ K F+D + + +
Sbjct: 716 KATERR--ELLEKERMAGLSHSIEDEILKGDDGETGYTVSEDALKEFEDADQLLEAQENE 773
Query: 603 HHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERV 662
+ + D F L+ A G +Q DK+ +++ NG
Sbjct: 774 NKKKKKPKSFKDPTFFLSHYAPA---------GDIQ--------DKQ----LQITNGFAN 812
Query: 663 SASGKVVKTESGAKVKATKTGIYKKWKERSHKKVYLKGASNE 704
A+ S KV+ K KW ++ K V +G N+
Sbjct: 813 DAAQAAYDLNSDDKVQVHKQTATVKWDKKRKKYVNTQGIDNK 854
Score = 122 (48.0 bits), Expect = 2.9e-79, Sum P(3) = 2.9e-79
Identities = 40/137 (29%), Positives = 68/137 (49%)
Query: 557 SKSMEKEVEPEADSLMAKEIKETHGSKRKAKTFKDEEYFISS-VPTNHHMEAGLSVRSDQ 615
S+ KE E +AD L+ + E K+K K+FKD +F+S P + L + +
Sbjct: 753 SEDALKEFE-DADQLLEAQENENK-KKKKPKSFKDPTFFLSHYAPAGDIQDKQLQITN-- 808
Query: 616 GFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIK---LNN--------GERVSA 664
GF + +AA DL +DD + KQ WDK+ KKY+ ++N G++++A
Sbjct: 809 GFANDAAQAAY-DLNSDDKVQVHKQTATVKWDKKRKKYVNTQGIDNKKYIIGESGQKIAA 867
Query: 665 SGKVVKTESGAKVKATK 681
S + + + +K + K
Sbjct: 868 SFRSGRFDDWSKARNLK 884
Score = 56 (24.8 bits), Expect = 2.4e-72, Sum P(3) = 2.4e-72
Identities = 22/87 (25%), Positives = 38/87 (43%)
Query: 535 DVMKKKRAVHEKIINLVHQQRSSKSMEKEVEPEAD-SLMAKEIKETHGSKRK---AKTFK 590
+++K A E++ L Q S+ + + + E D + K+ K+K A
Sbjct: 374 EIIKIPLATSEQLQKL---QNSNNEADSDSDDENDRQKKRRNFKKEKFRKQKMPAANELP 430
Query: 591 DEEYFISSVPTNHHMEAGLSVRSDQGF 617
E+ I VPT HH+E + D G+
Sbjct: 431 SEKATILFVPTRHHVEYISQLLRDCGY 457
Score = 42 (19.8 bits), Expect = 1.2e-105, Sum P(3) = 1.2e-105
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 743 SEIKDLDQVRKER 755
SE+K +Q+RK+R
Sbjct: 964 SELKSTEQIRKDR 976
>UNIPROTKB|F1RKB2 [details] [associations]
symbol:DDX54 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0030331 "estrogen receptor binding" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0003714 "transcription corepressor activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF08147 ProDom:PD024971 GO:GO:0005524
GO:GO:0003714 GO:GO:0005730 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00550000075100
EMBL:CU694784 Ensembl:ENSSSCT00000010825 OMA:AHGKCSA
ArrayExpress:F1RKB2 Uniprot:F1RKB2
Length = 716
Score = 426 (155.0 bits), Expect = 2.1e-74, Sum P(2) = 2.1e-74
Identities = 135/464 (29%), Positives = 223/464 (48%)
Query: 337 NVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHLFLSKPIR-AAPSE 395
NVIN+ FP K K+F+HRV +S V +++ YLLDLHLFL + + A P E
Sbjct: 243 NVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEVPYLLDLHLFLGRSLTLACPHE 302
Query: 396 EEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNA 455
E +++ A + + GR PQ V+D +R +++S +L SL R NA
Sbjct: 303 EP---------TEVAGAGGGRDCVLGRVPQGVVDDEDCGLRTTLEASLELRSLGRVADNA 353
Query: 456 FRLYSKTKPLPSKESIRRGK--DLPREGLHPMFKNVLEGGELMALAFSERLKAFRPKQTI 513
+ Y +++P PS ESI+R K DL GLHP+F + + EL L + ++ +R + TI
Sbjct: 354 QQQYMRSRPAPSPESIKRAKELDLAGLGLHPLFSSHFQEEELQQLQLVDSIRNYRSRTTI 413
Query: 514 LEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSK---------SMEK-- 562
E A S+ L SSQ VM+ KR K I Q R + S++
Sbjct: 414 FEIN---ASSRDL---SSQ---VMRAKRQKDRKAIARFQQGRQERQESPAGPALSLQAPP 464
Query: 563 EVEPEADSLMA--KEIKET---------------HGSKRKAKTFK--DEEYFISSVPTNH 603
E +PE + A + +++ G+KR+ + + D+ +++ P +
Sbjct: 465 EEQPEEEEKEAAGESVEDVFTEVVGQKRQKPGPDRGAKRRREEARQRDQAFYVPYRPKDF 524
Query: 604 HMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVS 663
E GLSV D G + AVLDL+ D++ L + +Q WD++ K+++ G+
Sbjct: 525 ESERGLSVGGDGGAFEQQAAGAVLDLMGDEAQSLTRGRQQLKWDRKKKRFV----GQSGQ 580
Query: 664 ASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNAEET-TSVPGGRHLXX 721
K +KTESG + ++ K +Y+KWK++ +K+ + + EG + GG+H
Sbjct: 581 EDKKKIKTESGRYISSSYKRDLYQKWKQK--QKIDDRDSEEEGAFDRRGPERRGGKH--- 635
Query: 722 XXXXXXXXXXQQRSVPNAHVCSEIKDLDQVRKERQKKADRIAFM 765
+ P V SE+K Q+ K+R ++A ++ F+
Sbjct: 636 -GRGQGASQPRTPGTPAGRVRSELKTKQQILKQR-RRAQKLRFL 677
Score = 396 (144.5 bits), Expect = 2.1e-74, Sum P(2) = 2.1e-74
Identities = 77/115 (66%), Positives = 93/115 (80%)
Query: 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPML 82
GGF+S+ LS VF+ I +KGYKVPTPIQRKT+PLIL G DVVAMARTGSGKTA FL+PM
Sbjct: 96 GGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPLILDGKDVVAMARTGSGKTACFLIPMF 155
Query: 83 QRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF 137
+RL Q G RALILSPTR+LALQT+KFTKELG++T L+ +L++GGD Q+
Sbjct: 156 ERLKARSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKCPMQW 210
>UNIPROTKB|F6UKZ0 [details] [associations]
symbol:DDX54 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR012541 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0003723 GO:GO:0004386
GeneTree:ENSGT00550000075100 Ensembl:ENSCAFT00000014352
EMBL:AAEX03014687 EMBL:AAEX03014686 OMA:FEINTSS Uniprot:F6UKZ0
Length = 569
Score = 672 (241.6 bits), Expect = 4.5e-66, P = 4.5e-66
Identities = 183/556 (32%), Positives = 283/556 (50%)
Query: 239 LKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYG 298
LK +FF +R++ K A LL+++R + QT++FV+TKHH E+L+ L +G+ + Y
Sbjct: 4 LKTSFFLVREDTKAAVLLHLLRTVVRPQDQTVVFVATKHHAEYLSELLTTQGVSCTHIYS 63
Query: 299 DMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXX 358
+DQ ARKI++++F K LIVTD+AARG+DIPLLDNVIN+ FP K K+F+HRV
Sbjct: 64 ALDQTARKINLAKFTHNKCSALIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVA 123
Query: 359 XXXXXXXXFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGET 418
+S V +++ YLLDLHLFL + + A E L +DGV+
Sbjct: 124 RAGRSGTAYSLVAPDEVPYLLDLHLFLGRALTPARPHEGSL-GVDGVL------------ 170
Query: 419 IYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK--D 476
GR PQ+V+D ++ I+ SS +L L R NA + Y +++P PS ESI+R K D
Sbjct: 171 --GRVPQSVVDDEESGLQSILTSSLELGGLSRVADNAQQQYVRSRPAPSPESIKRAKELD 228
Query: 477 LPREGLHPMFKNVLEGGELMALAFSERLKAFRPKQTILEAEG-------EAARSKHLQGP 529
L GLHP+F + E EL L + +K +R + TI E + R+K Q
Sbjct: 229 LTGLGLHPLFSSRFEEKELQRLKLVDSIKNYRSRATIFEINASSRDLSSQVMRAKR-QKD 287
Query: 530 SSQWVDVMKKKRAVHEKIINLVHQQRSSKSMEKEVEPEADSLMAKEIKETH----GSKRK 585
+ +R E +S+ EK E E + K I+E G KR+
Sbjct: 288 HKAIASFQQGRRGRQEDTAGPAPGCPASQE-EKPEEDEEEEAAGKSIEEVFTEVMGRKRQ 346
Query: 586 -------AKTFKDE------EYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVAD 632
AK ++E E+++ P + E GLS+ D G ++ AVLDL+ D
Sbjct: 347 QPGPEGGAKRRREEARHRDLEFYVPYRPKDFDSERGLSISGDGGAFEQQVAGAVLDLMGD 406
Query: 633 DSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKER 691
++ L + +Q WD++ K+++ G+ K +KTESG + ++ K +Y+KWK++
Sbjct: 407 EAQNLTRGRQQLKWDRKKKRFV----GQSGQEDKKKIKTESGRYISSSYKRDLYQKWKQK 462
Query: 692 SHKKVYLKGASNEGNAEETTSVPGGRHLXXXXXXXXXXXXQQRS--VPNAHVCSEIKDLD 749
+K+ + + EE TS G Q RS P V SE+K
Sbjct: 463 --QKI-----DDRDSEEEGTSHQRGPERRGGKRGRGQGAAQPRSPGAPAGRVRSELKTKQ 515
Query: 750 QVRKERQKKADRIAFM 765
Q+ K+R ++A ++ F+
Sbjct: 516 QILKQR-RRAQKLRFL 530
>UNIPROTKB|F8VRX4 [details] [associations]
symbol:DDX54 "ATP-dependent RNA helicase DDX54"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00039
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC089999 HGNC:HGNC:20084 ChiTaRS:DDX54 IPI:IPI01022245
ProteinModelPortal:F8VRX4 SMR:F8VRX4 Ensembl:ENST00000552375
ArrayExpress:F8VRX4 Bgee:F8VRX4 Uniprot:F8VRX4
Length = 208
Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
Identities = 133/197 (67%), Positives = 158/197 (80%)
Query: 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPML 82
GGF+S+ LS VF+ I +KGYKVPTPIQRKT+P+IL G DVVAMARTGSGKTA FL+PM
Sbjct: 13 GGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMF 72
Query: 83 QRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
+RL H Q G RALILSPTR+LALQTLKFTKELG++T L+ +L++GGD ME QF L +
Sbjct: 73 ERLKTHSAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHE 132
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
NPDIIIATPGRL+H E+ + L+SVEYVVFDEAD LF MGFAEQL +I+ +L QT
Sbjct: 133 NPDIIIATPGRLVHVAVEMS-LKLQSVEYVVFDEADRLFEMGFAEQLQEIIARLPGGHQT 191
Query: 203 LLFSATLPSALAEFAKA 219
+LFSATLP L EFA+A
Sbjct: 192 VLFSATLPKLLVEFARA 208
>ZFIN|ZDB-GENE-050706-47 [details] [associations]
symbol:zgc:111908 "zgc:111908" species:7955 "Danio
rerio" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR001650 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050706-47 GO:GO:0005524 GO:GO:0003676 GO:GO:0004386
eggNOG:COG0513 HOGENOM:HOG000246455 HOVERGEN:HBG051333
EMBL:BC098602 IPI:IPI00634979 ProteinModelPortal:Q4KME7
STRING:Q4KME7 PRIDE:Q4KME7 ArrayExpress:Q4KME7 Bgee:Q4KME7
Uniprot:Q4KME7
Length = 511
Score = 583 (210.3 bits), Expect = 4.2e-63, Sum P(2) = 4.2e-63
Identities = 127/270 (47%), Positives = 173/270 (64%)
Query: 196 LSEN---RQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
L EN RQTLLFSATLP + EFA+AGL +P L+RLDVDTK+S LKL+FF+LR ++K
Sbjct: 99 LHENPDARQTLLFSATLPKLIVEFARAGLTEPVLIRLDVDTKLSEQLKLSFFSLRLDDKP 158
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
A LL+++R + +QT++FV+TKHHVE+L L EG++ S Y +DQ ARKI + F
Sbjct: 159 ALLLHLLRNVVKPQEQTVVFVATKHHVEYLKELLSAEGVDCSCIYSALDQTARKISIGGF 218
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTS 372
RK M L+VTDVAARGIDIPLLDNVIN++FP KPK+F+HRV +S V
Sbjct: 219 VHRKVMLLLVTDVAARGIDIPLLDNVINYNFPCKPKLFLHRVGRVARAGRGGTAYSLVCP 278
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVS 432
+++ YL DLH FL +P++ A E + DGV +GR PQ+V+D
Sbjct: 279 DEVPYLYDLHRFLGRPMQLAHPEHTQ--EADGV--------------FGRVPQSVLDDEE 322
Query: 433 DRVREIIDSSADLNSLQRTCTNAFRLYSKT 462
++ +S DL +L+R NA++ Y K+
Sbjct: 323 CQLITAHQNSLDLQNLRRVSENAYKQYLKS 352
Score = 111 (44.1 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 49/174 (28%), Positives = 79/174 (45%)
Query: 419 IYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLP 478
++GR PQ+V+D ++ +S DL +L+R NA++ Y K+ K S R L
Sbjct: 309 VFGRVPQSVLDDEECQLITAHQNSLDLQNLRRVSENAYKQYLKS----IKRS--RNTQLT 362
Query: 479 REGLHPMFKNVLEGGELMALAFSERLKAFRPKQTILE--AEGEAARSKHLQGPSS---QW 533
+HP+ LE EL L + +K ++ K TI E + + S+ ++ S Q
Sbjct: 363 DMAVHPLLGCGLEKMELDRLLMVDTIKGYKAKSTIFEINSSNKTNASEVMRAKRSRDRQR 422
Query: 534 VDVMKKKRAV--HEKIINLVHQQRSSKSMEKEVEPEADSL-MAKEIKETHGSKR 584
V+ + RA E L + + ++E E E SL + I E SKR
Sbjct: 423 VEKFSRARAELRAEPGAGLRAEPPVHRETQEEDEEEQRSLNIIARIPEITMSKR 476
Score = 79 (32.9 bits), Expect = 4.2e-63, Sum P(2) = 4.2e-63
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPD 145
TR+L K K+ G + + L++GGDSM+ QF L +NPD
Sbjct: 63 TRELVRAQNKKKKKSGGFQSM--GLILGGDSMDDQFAALHENPD 104
>GENEDB_PFALCIPARUM|MAL8P1.19 [details] [associations]
symbol:MAL8P1.19 "RNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0020011 "apicoplast"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 GO:GO:0020011
EMBL:AL844507 RefSeq:XP_001349256.1 ProteinModelPortal:Q8IBA2
IntAct:Q8IBA2 MINT:MINT-1608586 EnsemblProtists:MAL8P1.19:mRNA
GeneID:2655364 KEGG:pfa:MAL8P1.19 EuPathDB:PlasmoDB:PF3D7_0827000
HOGENOM:HOG000282591 Uniprot:Q8IBA2
Length = 1289
Score = 585 (211.0 bits), Expect = 1.0e-61, Sum P(3) = 1.0e-61
Identities = 135/390 (34%), Positives = 222/390 (56%)
Query: 25 FESLNLSPNVFRAIKRK-GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQ 83
F+ L LS N+ R+I Y PT IQ+ + IL DV+ +++TGSGK+ +L ++
Sbjct: 161 FQQLGLSENMCRSIASNLKYNKPTNIQKLCITKILHRRDVICISKTGSGKSLVYLCTLID 220
Query: 84 RLNQHVPQGGVRALILSPTRDLALQTLKFTKELGR-YTDLRISLLVGGDSMESQFEELAQ 142
L +H G+R LI+ PT++L +Q K K++ + Y L I++++GG S+ QF+ L Q
Sbjct: 221 ILKEHNKYYGIRGLIILPTKELVIQIYKLCKKICKNYFHLNINIIIGGVSIIKQFDILNQ 280
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE-NRQ 201
N DI++ TPGRL L E + +SL+ VE ++ DEAD L + + ++ I L+ ++Q
Sbjct: 281 NLDILLCTPGRLSFLLQETK-LSLEKVEILIIDEADRLLELNYYNDMNVIYKSLNNTSKQ 339
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
T+L SATLP+ + + K L +P ++ L D I+ + L F R EK+A LL +I
Sbjct: 340 TILVSATLPTNVENYFKLKLNNPDVLFLTSDNTINEKVHLHFLFCRSYEKYALLLRLILI 399
Query: 262 HISSDQ-QTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM-F 319
+T+IF TK+H+ F + + + + S+ YG+ D R ++ F + + F
Sbjct: 400 FKKKKLGKTMIFFCTKYHILFFSNILKHFKIHHSILYGNSDTSFRFEQINNFTKNEHIQF 459
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLL 379
L+VTDVA+RGI+I + NVIN++ P PK+F+HR+ S +T +D+ Y
Sbjct: 460 LLVTDVASRGINITSVQNVINYNLPFSPKLFIHRIGRACRTDISGYGISLLTYQDILYAY 519
Query: 380 DLHLFLSKPIRAAPSEEEVL-LDMDGVMSK 408
++ F+ K ++ E+ VL DM+ + SK
Sbjct: 520 EICFFIGKKLKFFKKEKSVLDNDMEDISSK 549
Score = 68 (29.0 bits), Expect = 1.0e-61, Sum P(3) = 1.0e-61
Identities = 21/83 (25%), Positives = 37/83 (44%)
Query: 628 DLVADDSGGLQKQKQVYH--WDKRGKKYIKLN-NGERVSASGKVVKTESGAKVKATK-TG 683
DL D++ L KQ+ V WDK+ +K++ + + G K K T
Sbjct: 1053 DLPPDETEELNKQRFVKKQIWDKKKRKFVLTEIDTFQTDEFGIKKKVNKNKDDKTNSITN 1112
Query: 684 IYKKWKERSHKKVYLKGASNEGN 706
+Y+KW + + K++ G + N
Sbjct: 1113 LYEKWVKSTKKRIKNVGELEDEN 1135
Score = 61 (26.5 bits), Expect = 5.6e-61, Sum P(3) = 5.6e-61
Identities = 34/172 (19%), Positives = 76/172 (44%)
Query: 536 VMKKKRAVHEKIINLVHQQ-RSSKSMEK---EVEPEADSLMAKEIKETHGSKRKAKTFKD 591
V K K I NL + +S+K K E+E E D + ++ + +K K K+
Sbjct: 1099 VNKNKDDKTNSITNLYEKWVKSTKKRIKNVGELEDENDIIPKTKLNKNKNKNKKGKKNKN 1158
Query: 592 EEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAA---VLDLVADDSGGLQKQKQVYHWDK 648
+ + + + N+ S ++ + +N L+ + + ++ ++ +KQ+++Y
Sbjct: 1159 QNKYNNDISDNNDNN---SENEEKQYNINMLKLMHPEISEALSKNNKLTKKQQRIY---- 1211
Query: 649 RGKKYIKLNNGERVSASGKVVKTESGAKVKATKTGIYKKWK-ERSHKKVYLK 699
KKYI +G+ ++A+ + K K + + + ++ + YLK
Sbjct: 1212 --KKYI---SGKYINATTQKDTNTLHNTAKQRKKQLQNRLRTDKKFRTKYLK 1258
Score = 41 (19.5 bits), Expect = 1.0e-61, Sum P(3) = 1.0e-61
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 435 VREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSK 468
+ ++ +L SL ++ +++LY +P SK
Sbjct: 670 IEDLKKRDTELMSLNKSILASYKLYYSMRPKVSK 703
>UNIPROTKB|Q8IBA2 [details] [associations]
symbol:MAL8P1.19 "RNA helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0020011 "apicoplast" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 GO:GO:0020011 EMBL:AL844507
RefSeq:XP_001349256.1 ProteinModelPortal:Q8IBA2 IntAct:Q8IBA2
MINT:MINT-1608586 EnsemblProtists:MAL8P1.19:mRNA GeneID:2655364
KEGG:pfa:MAL8P1.19 EuPathDB:PlasmoDB:PF3D7_0827000
HOGENOM:HOG000282591 Uniprot:Q8IBA2
Length = 1289
Score = 585 (211.0 bits), Expect = 1.0e-61, Sum P(3) = 1.0e-61
Identities = 135/390 (34%), Positives = 222/390 (56%)
Query: 25 FESLNLSPNVFRAIKRK-GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQ 83
F+ L LS N+ R+I Y PT IQ+ + IL DV+ +++TGSGK+ +L ++
Sbjct: 161 FQQLGLSENMCRSIASNLKYNKPTNIQKLCITKILHRRDVICISKTGSGKSLVYLCTLID 220
Query: 84 RLNQHVPQGGVRALILSPTRDLALQTLKFTKELGR-YTDLRISLLVGGDSMESQFEELAQ 142
L +H G+R LI+ PT++L +Q K K++ + Y L I++++GG S+ QF+ L Q
Sbjct: 221 ILKEHNKYYGIRGLIILPTKELVIQIYKLCKKICKNYFHLNINIIIGGVSIIKQFDILNQ 280
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE-NRQ 201
N DI++ TPGRL L E + +SL+ VE ++ DEAD L + + ++ I L+ ++Q
Sbjct: 281 NLDILLCTPGRLSFLLQETK-LSLEKVEILIIDEADRLLELNYYNDMNVIYKSLNNTSKQ 339
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
T+L SATLP+ + + K L +P ++ L D I+ + L F R EK+A LL +I
Sbjct: 340 TILVSATLPTNVENYFKLKLNNPDVLFLTSDNTINEKVHLHFLFCRSYEKYALLLRLILI 399
Query: 262 HISSDQ-QTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM-F 319
+T+IF TK+H+ F + + + + S+ YG+ D R ++ F + + F
Sbjct: 400 FKKKKLGKTMIFFCTKYHILFFSNILKHFKIHHSILYGNSDTSFRFEQINNFTKNEHIQF 459
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLL 379
L+VTDVA+RGI+I + NVIN++ P PK+F+HR+ S +T +D+ Y
Sbjct: 460 LLVTDVASRGINITSVQNVINYNLPFSPKLFIHRIGRACRTDISGYGISLLTYQDILYAY 519
Query: 380 DLHLFLSKPIRAAPSEEEVL-LDMDGVMSK 408
++ F+ K ++ E+ VL DM+ + SK
Sbjct: 520 EICFFIGKKLKFFKKEKSVLDNDMEDISSK 549
Score = 68 (29.0 bits), Expect = 1.0e-61, Sum P(3) = 1.0e-61
Identities = 21/83 (25%), Positives = 37/83 (44%)
Query: 628 DLVADDSGGLQKQKQVYH--WDKRGKKYIKLN-NGERVSASGKVVKTESGAKVKATK-TG 683
DL D++ L KQ+ V WDK+ +K++ + + G K K T
Sbjct: 1053 DLPPDETEELNKQRFVKKQIWDKKKRKFVLTEIDTFQTDEFGIKKKVNKNKDDKTNSITN 1112
Query: 684 IYKKWKERSHKKVYLKGASNEGN 706
+Y+KW + + K++ G + N
Sbjct: 1113 LYEKWVKSTKKRIKNVGELEDEN 1135
Score = 61 (26.5 bits), Expect = 5.6e-61, Sum P(3) = 5.6e-61
Identities = 34/172 (19%), Positives = 76/172 (44%)
Query: 536 VMKKKRAVHEKIINLVHQQ-RSSKSMEK---EVEPEADSLMAKEIKETHGSKRKAKTFKD 591
V K K I NL + +S+K K E+E E D + ++ + +K K K+
Sbjct: 1099 VNKNKDDKTNSITNLYEKWVKSTKKRIKNVGELEDENDIIPKTKLNKNKNKNKKGKKNKN 1158
Query: 592 EEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAA---VLDLVADDSGGLQKQKQVYHWDK 648
+ + + + N+ S ++ + +N L+ + + ++ ++ +KQ+++Y
Sbjct: 1159 QNKYNNDISDNNDNN---SENEEKQYNINMLKLMHPEISEALSKNNKLTKKQQRIY---- 1211
Query: 649 RGKKYIKLNNGERVSASGKVVKTESGAKVKATKTGIYKKWK-ERSHKKVYLK 699
KKYI +G+ ++A+ + K K + + + ++ + YLK
Sbjct: 1212 --KKYI---SGKYINATTQKDTNTLHNTAKQRKKQLQNRLRTDKKFRTKYLK 1258
Score = 41 (19.5 bits), Expect = 1.0e-61, Sum P(3) = 1.0e-61
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 435 VREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSK 468
+ ++ +L SL ++ +++LY +P SK
Sbjct: 670 IEDLKKRDTELMSLNKSILASYKLYYSMRPKVSK 703
>ASPGD|ASPL0000013201 [details] [associations]
symbol:AN4233 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 EMBL:BN001302
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 EMBL:AACD01000068 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
RefSeq:XP_661837.1 ProteinModelPortal:Q5B5E7 SMR:Q5B5E7
STRING:Q5B5E7 EnsemblFungi:CADANIAT00004427 GeneID:2873652
KEGG:ani:AN4233.2 OrthoDB:EOG4ZPJ3P Uniprot:Q5B5E7
Length = 465
Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
Identities = 145/391 (37%), Positives = 216/391 (55%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L + + A + GYK PTPIQ + +PL L G DV+ +A TGSGKTAAF +PMLQ
Sbjct: 48 FKELGIIDQLCEACENMGYKAPTPIQSQAIPLALEGRDVIGLAETGSGKTAAFALPMLQA 107
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L + PQ + L+L+PTR+LA Q + + LG +R +++VGG M +Q L + P
Sbjct: 108 LME-APQT-LFGLVLAPTRELAYQISQAFETLGSTIGVRCAVIVGGMDMVAQSIALGKKP 165
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
II+ATPGRL+ HL + SL++++Y+ DEAD L M F E L KI+ L R T L
Sbjct: 166 HIIVATPGRLLDHLENTKGFSLRNLKYLAIDEADRLLDMDFGESLDKIIRILPRTRHTYL 225
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISP--DLKLAFFTLRQEEKHAALLYMIREH 262
FSAT+ + + +A L +P VR+ V +K L+ ++ + + K+ L+Y++ E
Sbjct: 226 FSATMSTKVESLQRASLSNP--VRVSVSSKYQTVSTLQSSYICIPHKHKNLYLVYLLNEF 283
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
+ Q +IF +T H + + + R G +G + Q AR + +FR+R L+
Sbjct: 284 --AGQSAIIFTTTVHETQRVAFMLRALGFGAIPLHGQLSQSARLGALGKFRSRSRDILVA 341
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLH 382
TDVAARG+DIP +D V N+D P K ++HRV SFVT D+ L +
Sbjct: 342 TDVAARGLDIPSVDVVFNFDLPMDSKTYIHRVGRTARAGKSGVAISFVTQYDVEVWLRIE 401
Query: 383 LFLSKPIRAAPSE-EEVLLDMDGVMSKIDQA 412
LSK + E +EV++ + V QA
Sbjct: 402 HALSKKLPEYQVEKDEVMVMSERVAEASRQA 432
>TAIR|locus:2173517 [details] [associations]
symbol:AT5G60990 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009220
"pyrimidine ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003723 EMBL:AB008269 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
EMBL:AK117799 EMBL:BT005375 EMBL:AY088068 EMBL:AJ010462
IPI:IPI00518446 PIR:T51342 RefSeq:NP_568931.1 UniGene:At.20430
ProteinModelPortal:Q8GY84 SMR:Q8GY84 STRING:Q8GY84 PaxDb:Q8GY84
PRIDE:Q8GY84 EnsemblPlants:AT5G60990.1 GeneID:836220
KEGG:ath:AT5G60990 GeneFarm:923 TAIR:At5g60990 InParanoid:Q8GY84
PhylomeDB:Q8GY84 ProtClustDB:CLSN2690059 Genevestigator:Q8GY84
GermOnline:AT5G60990 Uniprot:Q8GY84
Length = 456
Score = 576 (207.8 bits), Expect = 7.8e-60, Sum P(2) = 7.8e-60
Identities = 136/390 (34%), Positives = 217/390 (55%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L + + +A +R G+K P+ IQ + +P L G DV+ +A+TGSGKT AF +P+LQ
Sbjct: 11 FAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQA 70
Query: 85 LNQHV----PQGGVR------ALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSME 134
L ++V P+ G R A +LSPTR+LA+Q + + LG LR ++LVGG
Sbjct: 71 LLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDRM 130
Query: 135 SQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILG 194
Q L + P +I+ATPGRL H+S+ + SLKS++Y+V DEAD L F + L++IL
Sbjct: 131 QQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILE 190
Query: 195 QLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISP-D-LKLAFFTLRQEEKH 252
++ R+T LFSAT+ + + +A LR+P V+++ +K S D LK + + + K
Sbjct: 191 EIPLERKTFLFSATMTKKVRKLQRACLRNP--VKIEAASKYSTVDTLKQQYRFVAAKYKD 248
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
L+Y++ E + ++IF T FL ++ R G G M Q R +++F
Sbjct: 249 CYLVYILSE--MPESTSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKF 306
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTS 372
+A + L+ TDVA+RG+DIP +D VIN+D P K ++HRV S V
Sbjct: 307 KAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQ 366
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEEEVLLDM 402
++ + + + + K + P+EE+ +L +
Sbjct: 367 YELEWYIQIEKLIGKKLPEYPAEEDEVLSL 396
Score = 55 (24.4 bits), Expect = 7.8e-60, Sum P(2) = 7.8e-60
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 567 EADSLMAKEIKETHGSKRKAKTFKDEEYFISSVPTNHHMEAG 608
EA L A +KE+ G KR+ + ++ E F+ + E G
Sbjct: 402 EAKKLSAMNMKESGGRKRRGEDDEESERFLGGNKDRGNKERG 443
>CGD|CAL0000864 [details] [associations]
symbol:DRS1 species:5476 "Candida albicans" [GO:0035690
"cellular response to drug" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864 GO:GO:0005524
GO:GO:0005730 GO:GO:0042254 GO:GO:0003723 GO:GO:0035690
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_719395.1 ProteinModelPortal:Q5ACK7
STRING:Q5ACK7 GeneID:3639045 KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 583 (210.3 bits), Expect = 2.0e-59, Sum P(2) = 2.0e-59
Identities = 129/357 (36%), Positives = 214/357 (59%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F++L LS V + I + PTPIQ ++P+ L G D+VA A+TGSGKT A+++P+++R
Sbjct: 132 FQTLQLSRPVLKGIAELKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIPIIER 191
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD-LRISLLVGGDSMESQFEELAQN 143
L + P + +IL+PTR+LALQ +F K+L + + L I L VGG ++ Q E+L
Sbjct: 192 L-LYKPSTSTKVIILTPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQQEEQLKTR 250
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSEN-RQT 202
PDI+IATPGRL+ H+ S++ ++ +V DEAD + GF ++L +IL + ++ RQT
Sbjct: 251 PDIVIATPGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEILSLIPKHKRQT 310
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEK-HAALLYMIRE 261
LLFSAT+ + + + + L+ P + +D ++ L F +R+ ++ ALLY + +
Sbjct: 311 LLFSATMNTRIQDLIQLSLQKPVRIMIDPPKSVASKLLQQFVRIRKRDQLKPALLYQLLK 370
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+SS + ++FV+ K L ++ GL+ S +G + Q+ R +V F++ + LI
Sbjct: 371 GVSS--RVVVFVARKETAHRLRIVLGLLGLKVSELHGALTQEQRLQNVKNFKSLEVPVLI 428
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFV--TSEDMA 376
TD+AARG+DIP ++ VIN+D P +I++HRV +FV +S++ A
Sbjct: 429 CTDLAARGLDIPKIELVINYDMPKTFEIYLHRVGRTARAGRDGTSITFVGESSQERA 485
Score = 44 (20.5 bits), Expect = 2.0e-59, Sum P(2) = 2.0e-59
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 546 KIINLVHQQRSSKSMEKEV--EPEADSLMAKEIKETHGSKRKAKTFKDEE 593
K NL+ ++ S K + E + K K+ + KRKA + +E
Sbjct: 542 KASNLIKHEQEIHSRPKRTWFKGEVMEQLTKHGKKVNSKKRKANEVRKDE 591
Score = 41 (19.5 bits), Expect = 4.2e-59, Sum P(2) = 4.2e-59
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 648 KRGKKYIKLNNGERVSASGKVVKTESGAKVKATKTGIYKKWKERSHKK 695
K GKK +N+ +R V+ + G K TKT K ++ KK
Sbjct: 572 KHGKK---VNSKKR---KANEVRKDEGRSYKKTKTDRMKISNKKKSKK 613
>UNIPROTKB|Q5ACK7 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:237561 "Candida albicans SC5314" [GO:0035690 "cellular
response to drug" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864
GO:GO:0005524 GO:GO:0005730 GO:GO:0042254 GO:GO:0003723
GO:GO:0035690 EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K13181 RefSeq:XP_719395.1
ProteinModelPortal:Q5ACK7 STRING:Q5ACK7 GeneID:3639045
KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 583 (210.3 bits), Expect = 2.0e-59, Sum P(2) = 2.0e-59
Identities = 129/357 (36%), Positives = 214/357 (59%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F++L LS V + I + PTPIQ ++P+ L G D+VA A+TGSGKT A+++P+++R
Sbjct: 132 FQTLQLSRPVLKGIAELKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIPIIER 191
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD-LRISLLVGGDSMESQFEELAQN 143
L + P + +IL+PTR+LALQ +F K+L + + L I L VGG ++ Q E+L
Sbjct: 192 L-LYKPSTSTKVIILTPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQQEEQLKTR 250
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSEN-RQT 202
PDI+IATPGRL+ H+ S++ ++ +V DEAD + GF ++L +IL + ++ RQT
Sbjct: 251 PDIVIATPGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEILSLIPKHKRQT 310
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEK-HAALLYMIRE 261
LLFSAT+ + + + + L+ P + +D ++ L F +R+ ++ ALLY + +
Sbjct: 311 LLFSATMNTRIQDLIQLSLQKPVRIMIDPPKSVASKLLQQFVRIRKRDQLKPALLYQLLK 370
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+SS + ++FV+ K L ++ GL+ S +G + Q+ R +V F++ + LI
Sbjct: 371 GVSS--RVVVFVARKETAHRLRIVLGLLGLKVSELHGALTQEQRLQNVKNFKSLEVPVLI 428
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFV--TSEDMA 376
TD+AARG+DIP ++ VIN+D P +I++HRV +FV +S++ A
Sbjct: 429 CTDLAARGLDIPKIELVINYDMPKTFEIYLHRVGRTARAGRDGTSITFVGESSQERA 485
Score = 44 (20.5 bits), Expect = 2.0e-59, Sum P(2) = 2.0e-59
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 546 KIINLVHQQRSSKSMEKEV--EPEADSLMAKEIKETHGSKRKAKTFKDEE 593
K NL+ ++ S K + E + K K+ + KRKA + +E
Sbjct: 542 KASNLIKHEQEIHSRPKRTWFKGEVMEQLTKHGKKVNSKKRKANEVRKDE 591
Score = 41 (19.5 bits), Expect = 4.2e-59, Sum P(2) = 4.2e-59
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 648 KRGKKYIKLNNGERVSASGKVVKTESGAKVKATKTGIYKKWKERSHKK 695
K GKK +N+ +R V+ + G K TKT K ++ KK
Sbjct: 572 KHGKK---VNSKKR---KANEVRKDEGRSYKKTKTDRMKISNKKKSKK 613
>POMBASE|SPAC30D11.03 [details] [associations]
symbol:ddx27 "ATP-dependent RNA helicase Ddx27/Drs1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC30D11.03 GO:GO:0005524 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000265456 KO:K13181 OrthoDB:EOG4B01XM PIR:S62561
RefSeq:NP_593214.1 ProteinModelPortal:Q09903 STRING:Q09903
EnsemblFungi:SPAC30D11.03.1 GeneID:2543155 KEGG:spo:SPAC30D11.03
NextBio:20804181 Uniprot:Q09903
Length = 754
Score = 568 (205.0 bits), Expect = 2.0e-59, Sum P(2) = 2.0e-59
Identities = 130/338 (38%), Positives = 207/338 (61%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+S+NLS + + + G++VPT IQ KT+PL L G D+V A TGSGKTAAF+VP+L+R
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILER 320
Query: 85 L---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L + VP R LIL PTR+LA+Q ++ +TD+ + L +GG S++ Q +EL
Sbjct: 321 LLYRPKKVPT--TRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELR 378
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ PDI+IATPGR + H+ + +++++E +V DEAD + GFA++L++I+ ++RQ
Sbjct: 379 KRPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQACPKSRQ 438
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLA--FFTLR-QEE--KHAALL 256
T+LFSAT+ + + + L P VR+ VD K + L F +R Q E + A L+
Sbjct: 439 TMLFSATMTDKVDDLIRLSLNRP--VRVFVDNKKTTAKLLTQEFVRVRPQRELLRPAMLI 496
Query: 257 YMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK 316
Y+ +E ++T+IF +K + V+F L + +G + Q+ R + FR K
Sbjct: 497 YLCKELFH--RRTIIFFRSKAFAHKMRVIFGLLSLNATEIHGSLSQEQRVRALEDFRDGK 554
Query: 317 TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRV 354
+L+ TDVA+RGIDI ++ VIN++ P ++++HRV
Sbjct: 555 CNYLLATDVASRGIDIKGIEVVINYEAPATHEVYLHRV 592
Score = 59 (25.8 bits), Expect = 2.0e-59, Sum P(2) = 2.0e-59
Identities = 34/120 (28%), Positives = 53/120 (44%)
Query: 474 GKDLPREGLHPMFKNVL-EGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQ 532
GK++ E L P+ + VL E + L +ER + + I++ G+ RS+ P+
Sbjct: 644 GKEI--EELEPVVQKVLDEEKQERELKIAER--DLKKGENIMKY-GDEIRSR----PART 694
Query: 533 WVDVMKKKRAVH-EKIINLVHQQRSSKSMEKEVEPEA------DSLMAKEIKETHGSKRK 585
W K K+A + + + K MEKE P A D L K+ + SKRK
Sbjct: 695 WFQSEKDKQASKASEAKDKKSLAKRKKQMEKEEVPRAYKKTKNDRLSNKKSTKKSKSKRK 754
>UNIPROTKB|A4QYM6 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
EMBL:CM001233 GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K13181 RefSeq:XP_003712922.1
ProteinModelPortal:A4QYM6 STRING:A4QYM6 GeneID:2683645
KEGG:mgr:MGG_07718 OrthoDB:EOG4B01XM Uniprot:A4QYM6
Length = 790
Score = 587 (211.7 bits), Expect = 4.2e-59, Sum P(2) = 4.2e-59
Identities = 144/393 (36%), Positives = 216/393 (54%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+S++LS + R + G+ PTPIQ KT+P+ L G DVV A TGSGKTAAF+VP+L+R
Sbjct: 257 FQSMSLSRPILRGLTSVGFAKPTPIQSKTIPIALMGKDVVGGAVTGSGKTAAFVVPILER 316
Query: 85 L---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L + VP R +IL+PTR+LA+Q +L +TD++ L VGG S++ Q EL
Sbjct: 317 LLYRPKKVPTS--RVVILAPTRELAIQCHAVATKLASHTDIKFCLAVGGLSLKVQESELR 374
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
PD+IIATPGR + H+ ++ +VE +V DEAD + GFA++L++IL L ++RQ
Sbjct: 375 LRPDVIIATPGRFIDHMRNSASFAVDTVEILVLDEADRMLEDGFADELNEILTTLPKSRQ 434
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR--QEEKHAALLYMI 259
T+LFSAT+ S++ + GL P + +D K L F LR +EEK L +
Sbjct: 435 TMLFSATMTSSVDNLIRVGLNKPVRLMVDSQKKTVVTLTQEFVRLRPGREEKRMGYLVYL 494
Query: 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319
+++ +++ +IF K ++F GL + +G M Q R V FR K F
Sbjct: 495 CKNLYTER-VIIFFRQKKIAHHARIIFGLLGLSCAELHGSMSQIQRIQSVEAFRDGKVSF 553
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLL 379
L+ TD+A+RG+DI +D VIN++ P +I+VHRV + D ++
Sbjct: 554 LLATDLASRGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGRSGTAITLAAEPDRK-VV 612
Query: 380 DLHLFLSKPIRAAPSEEEV-LLDMDGVMSKIDQ 411
+ K A S + D D +KID+
Sbjct: 613 KAAVKAGKAQGAKISSRIIDAADADSWQAKIDE 645
Score = 37 (18.1 bits), Expect = 4.2e-59, Sum P(2) = 4.2e-59
Identities = 15/55 (27%), Positives = 23/55 (41%)
Query: 395 EEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQ 449
EE+VL D M K + I + I R +T + D+ A LN ++
Sbjct: 659 EEKVLAQADMEMRKGENMIRYEDDIKARPKRTWFETEKDKKAAREAGRAALNGVR 713
Score = 37 (18.1 bits), Expect = 4.2e-59, Sum P(2) = 4.2e-59
Identities = 17/65 (26%), Positives = 29/65 (44%)
Query: 529 PSSQWVDVMKKKRAVHEK---IINLVHQ----QRSSKSMEKEVEPEADSLMAKEIKETHG 581
P W + K K+A E +N V + + K++ + + + D+ MA E KE
Sbjct: 687 PKRTWFETEKDKKAAREAGRAALNGVREALKKKHGGKNLSNKDKKKLDA-MA-EAKEARV 744
Query: 582 SKRKA 586
K+ A
Sbjct: 745 WKKGA 749
>DICTYBASE|DDB_G0281711 [details] [associations]
symbol:ddx27 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0281711 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0042254 GO:GO:0003723
EMBL:AAFI02000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_640597.1 HSSP:Q5STU4 ProteinModelPortal:Q54TJ4
STRING:Q54TJ4 EnsemblProtists:DDB0234201 GeneID:8623207
KEGG:ddi:DDB_G0281711 OMA:SEYRAIR Uniprot:Q54TJ4
Length = 783
Score = 606 (218.4 bits), Expect = 4.5e-59, P = 4.5e-59
Identities = 131/360 (36%), Positives = 212/360 (58%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE L+LS + +A+++ G+ PTPIQ K +PL L+G D++A A TGSGKTAAFL+P+L+R
Sbjct: 192 FEELHLSRPLLKAVQKLGFSQPTPIQAKAIPLALNGKDILASASTGSGKTAAFLLPVLER 251
Query: 85 LN-QHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L + +R LIL PTR+LALQ + L +++++ L+VGG S ++Q EL ++
Sbjct: 252 LLFRDSEYRAIRVLILLPTRELALQCQSVMENLAQFSNITSCLIVGGLSNKAQEVELRKS 311
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
PD++IATPGRL+ HL + L +E ++ DEAD L MGF ++++KI+ NRQT+
Sbjct: 312 PDVVIATPGRLIDHLLNAHGIGLDDLEILILDEADRLLDMGFKDEINKIVESCPTNRQTM 371
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE--KHAALLYMIRE 261
LFSATL + AK L+ P V++D +++ L+ F ++ + A+L +
Sbjct: 372 LFSATLNDEVKTLAKLSLQQPIRVQVDALMQVTSTLEQEFVKIKPQHLSDRPAILLSLCT 431
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ + T+IF +K V L ++F L+ + +G++ Q+ R + +FR + +L+
Sbjct: 432 RVFNQGGTIIFCRSKKEVHRLRIIFGLSDLKAAELHGNLSQEQRFDSLQQFRDGQVNYLL 491
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDL 381
+DVA+RG+DI + VIN++ P ++HRV SF+T D L D+
Sbjct: 492 ASDVASRGLDIIGVKTVINYNMPNNMANYIHRVGRTARAGMDGKSCSFITDNDRKLLKDI 551
>SGD|S000003931 [details] [associations]
symbol:DRS1 "Nucleolar DEAD-box protein required for ribosome
assembly and function" species:4932 "Saccharomyces cerevisiae"
[GO:0000027 "ribosomal large subunit assembly" evidence=TAS]
[GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=TAS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000003931 GO:GO:0005524 GO:GO:0005730
EMBL:BK006945 GO:GO:0003723 GO:GO:0030687 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 EMBL:X91488
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
KO:K13181 OrthoDB:EOG4B01XM EMBL:L00683 EMBL:Z73113 PIR:S64750
RefSeq:NP_013093.1 ProteinModelPortal:P32892 SMR:P32892
DIP:DIP-6471N IntAct:P32892 MINT:MINT-648259 STRING:P32892
PaxDb:P32892 PeptideAtlas:P32892 EnsemblFungi:YLL008W GeneID:850652
KEGG:sce:YLL008W CYGD:YLL008w OMA:RIRKRDH NextBio:966605
Genevestigator:P32892 GermOnline:YLL008W Uniprot:P32892
Length = 752
Score = 566 (204.3 bits), Expect = 5.4e-59, Sum P(2) = 5.4e-59
Identities = 127/357 (35%), Positives = 202/357 (56%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F SL+LS V + + GY P+PIQ T+P+ L G D++A A TGSGKTAAF++P+++R
Sbjct: 233 FNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIER 292
Query: 85 LNQHVPQ-GGVRALILSPTRDLALQTLKFTKELGRYTD-LRISLLVGGDSMESQFEELAQ 142
L + R ++L PTR+LA+Q K++ R+ + L VGG ++ Q + L
Sbjct: 293 LLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLNLRQQEQMLKS 352
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
PDI+IATPGR + H+ ++ SVE +V DEAD + GF ++L++I+G L NRQ
Sbjct: 353 RPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQN 412
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE--KHAALLYMIR 260
LLFSAT+ S + L+ P + +D K + L F +R+ + K A L +IR
Sbjct: 413 LLFSATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALLFNLIR 472
Query: 261 EHISSDQQTLI-FVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319
+ + Q+ ++ FV+ K L ++ G+ +G + Q+ R V++F+ +
Sbjct: 473 KLDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVPV 532
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFV--TSED 374
LI TD+A+RG+DIP ++ VIN+D P +I++HRV +FV +S+D
Sbjct: 533 LICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQD 589
Score = 57 (25.1 bits), Expect = 5.4e-59, Sum P(2) = 5.4e-59
Identities = 25/96 (26%), Positives = 46/96 (47%)
Query: 490 LEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIIN 549
L GE M L + ++A RP++T ++E + SK L G S+ V K+ E+
Sbjct: 655 LRKGENM-LKHKKEIQA-RPRRTWFQSESDKKNSKVL-GALSRNKKVTNSKKRKREEAKA 711
Query: 550 LVHQQRSSKSMEKEVEPEADSLMAKEIKETHGSKRK 585
+ RS + + + + + K+ K T+ +K+K
Sbjct: 712 DGNGARSYRKTKTDRIADQERTFKKQ-KSTNSNKKK 746
>WB|WBGene00012059 [details] [associations]
symbol:T26G10.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0006915
GO:GO:0002119 GO:GO:0010171 GO:GO:0003723 GO:GO:0040035
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 KO:K14777
OMA:IFIPSKF EMBL:Z29115 PIR:S40731 RefSeq:NP_499069.1
ProteinModelPortal:P34580 SMR:P34580 STRING:P34580 PaxDb:P34580
EnsemblMetazoa:T26G10.1 GeneID:176321 KEGG:cel:CELE_T26G10.1
UCSC:T26G10.1 CTD:176321 WormBase:T26G10.1 InParanoid:P34580
NextBio:892086 Uniprot:P34580
Length = 489
Score = 574 (207.1 bits), Expect = 3.8e-58, Sum P(2) = 3.8e-58
Identities = 133/389 (34%), Positives = 213/389 (54%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L +S + A +R G+ P+ IQ+ +P L G DV+ +A TGSGKT AF +P+LQ
Sbjct: 46 FAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQS 105
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L H PQ L+L+PTR+LA Q + + LG L +++VGG M +Q LA+ P
Sbjct: 106 LLDH-PQAFF-CLVLTPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDMAAQAMALARRP 163
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
II+ATPGRL+ HL + +LK++++++ DEAD + M F +L KIL + R+T L
Sbjct: 164 HIIVATPGRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIPRERRTYL 223
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+ +++ +A LRDP V + K +LK + + + K L+Y++ EH
Sbjct: 224 FSATMTKKVSKLERASLRDPARVSVSSRYKTVDNLKQHYIFVPNKYKETYLVYLLNEHAG 283
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
+ ++F +T + V+ R+ G++ +G M Q+ R +++F+++ L+ TD
Sbjct: 284 NS--AIVFCATCATTMQIAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKAREILVCTD 341
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHLF 384
VAARG+DIP +D VIN+D P + K +VHRV + VT D+ +
Sbjct: 342 VAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGIAITVVTQYDVEAYQKIEAN 401
Query: 385 LSKPIRAAPS-EEEVLLDMDGVMSKIDQA 412
L K + E EV++ ++ + A
Sbjct: 402 LGKKLDEYKCVENEVMVLVERTQEATENA 430
Score = 41 (19.5 bits), Expect = 3.8e-58, Sum P(2) = 3.8e-58
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 733 QRSVPNAHVCSEIKDLDQVRKERQKK 758
Q + NA + E+K++D+ +K +K+
Sbjct: 424 QEATENARI--EMKEMDEKKKSGKKR 447
>ASPGD|ASPL0000062195 [details] [associations]
symbol:AN10125 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:BN001308 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:RIRKRDH EnsemblFungi:CADANIAT00001822 Uniprot:C8VQD7
Length = 814
Score = 571 (206.1 bits), Expect = 6.5e-58, Sum P(2) = 6.5e-58
Identities = 133/338 (39%), Positives = 201/338 (59%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ NLS + R + + PTPIQ+KT+P+ L G D+V A TGSGKTAAF+VP+L+R
Sbjct: 300 FQEFNLSRPILRGLAAVNFTNPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILER 359
Query: 85 L---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L + VP R IL PTR+LA+Q +L YTD+ LVGG S+ Q L
Sbjct: 360 LLFRPRKVPTS--RVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENVLK 417
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ PD+IIATPGR + H+ ++ ++E +V DEAD + GFA++L++IL + ++RQ
Sbjct: 418 KRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQ 477
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLA--FFTLR--QEEKHAA-LL 256
T+LFSAT+ ++ + + GL P VRL VDTK + + L F LR +E+K LL
Sbjct: 478 TMLFSATMTDSVDKLIRVGLNRP--VRLMVDTKKNTAVTLVQEFVRLRPGREDKRLGYLL 535
Query: 257 YMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK 316
++ +E + + ++F K + ++F GL+ + +G M Q+ R V FR
Sbjct: 536 HLCKEVYTG--RVIVFFRQKKEAHRVRIVFGLLGLKAAELHGSMSQEQRIKSVESFRDGN 593
Query: 317 TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRV 354
FL+ TD+A+RG+DI ++ VIN++ P +I+VHRV
Sbjct: 594 VNFLLATDLASRGLDIKGVETVINYEAPQSHEIYVHRV 631
Score = 43 (20.2 bits), Expect = 6.5e-58, Sum P(2) = 6.5e-58
Identities = 37/137 (27%), Positives = 56/137 (40%)
Query: 460 SKTKPLPSK-ESIRRGKDLPREGLHPMFKNVLEGGELMALAFSERLKAFRPKQTILEAEG 518
SK K + + +++ + L ++ L V +G L + +K+ RPK+T E E
Sbjct: 684 SKAKDMEEEIDAVLEEEKLEKQ-LAQAEMQVTKGENL--IKHEAEIKS-RPKRTWFETER 739
Query: 519 EAARSK-----HLQGPSS-QWVDVMKK--KRAVHEKIINLVHQQRSSKSMEKEVEPEADS 570
E +K L GPS + V + K KR K+ R E+E +P A
Sbjct: 740 EKRVAKKIGAAELNGPSKKEKVKLSNKDKKRLDAAKLRQEEGLGRKKSKAERE-DPRAGK 798
Query: 571 LMAKEIKETHGSKRKAK 587
AK K K K K
Sbjct: 799 --AKLGKGKGKGKGKGK 813
>DICTYBASE|DDB_G0280147 [details] [associations]
symbol:ddx47 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0280147 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000152_GR GO:GO:0003723
EMBL:AAFI02000035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q5STU4 KO:K14777 OMA:IFIPSKF
RefSeq:XP_641271.1 ProteinModelPortal:Q54VT4 SMR:Q54VT4
EnsemblProtists:DDB0234204 GeneID:8622403 KEGG:ddi:DDB_G0280147
Uniprot:Q54VT4
Length = 546
Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
Identities = 138/379 (36%), Positives = 213/379 (56%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FESL + P + A + G+ P IQR+++P L G D++ +A+TGSGKTAAF++P+LQ+
Sbjct: 121 FESLGVHPQIIDACNKLGFNKPKEIQRESIPWALKGRDIIGLAQTGSGKTAAFVIPVLQK 180
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGG-DSMESQFEELAQN 143
L + PQG + L L+PTR+LA Q +G ++ +LVGG DSM SQ LA+
Sbjct: 181 LLE-APQG-LFCLALAPTRELAYQIADQFNAIGSTIGVKTCVLVGGIDSM-SQSLALAKK 237
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
P +++ +PGR++HHL + +L+S++Y + DEAD LF F E+++ IL + + R T
Sbjct: 238 PHVVVGSPGRVLHHLEHTKGFNLRSIKYFIMDEADRLFSADFEEEVNNILKVIPKERNTY 297
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISP-DLKLA-FFTLRQEEKHAALLYMIRE 261
LFSAT+ S +A+ +A L +P V++ V +K D L + + + K L Y++ E
Sbjct: 298 LFSATMTSKVAKLQRASLVNP--VKVQVASKYQTVDTLLQQYLFVPFKYKDCYLAYILNE 355
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ T+IF ST + ++ R G GDMDQ R +++F+ L+
Sbjct: 356 --LAGNLTIIFTSTCASSTKIAMMLRNLGFGAIPINGDMDQGKRLASLNKFKQGTKSILV 413
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDL 381
TDVAARG+DIP +D VIN+D P K +VHRV + VT D+ +
Sbjct: 414 ATDVAARGLDIPSVDLVINYDVPTNSKEYVHRVGRTARAGNSGRAITIVTQYDVEMYQRI 473
Query: 382 HLFLSKPIRAAPSEEEVLL 400
L K + + P +EE +L
Sbjct: 474 EFVLKKKLDSFPCQEETVL 492
>UNIPROTKB|A1A4H6 [details] [associations]
symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:BC126497 IPI:IPI00734460 RefSeq:NP_001073740.1 UniGene:Bt.2644
ProteinModelPortal:A1A4H6 PRIDE:A1A4H6 Ensembl:ENSBTAT00000057089
GeneID:514567 KEGG:bta:514567 CTD:55661
GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH NextBio:20871404
Uniprot:A1A4H6
Length = 765
Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
Identities = 176/592 (29%), Positives = 292/592 (49%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ +NLS + +AI G+K PTPIQ+ +P+ L G D+ A A TG+GKTAAF +P+L+R
Sbjct: 189 FQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLER 248
Query: 85 LNQHVPQGGV-RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L Q V R L+L PTR+L +Q TK+L ++ + L VGG ++SQ L
Sbjct: 249 LIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAA 308
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
PDI+IATPGRL+ HL L S+E ++ DEAD + F EQ+ +I+ S +RQT+
Sbjct: 309 PDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTM 368
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR--QEEKHAALLYMIRE 261
LFSAT+ + + A L++P + ++ +T ++P L+ F +R +E A++ +
Sbjct: 369 LFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLM 428
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+D ++F TK +++L GL+ +G++ Q R + RF+ + L+
Sbjct: 429 RTFTDH-VMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILV 487
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDL 381
TDVAARG+DI + VIN+ P K +VHRV S V E+ L ++
Sbjct: 488 ATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEI 547
Query: 382 HLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDS 441
P++A ++V+L + K+++ +Y V+ L ++ +E+ S
Sbjct: 548 VKAAKAPVKARILPQDVILKFRDKIEKMEK------DVYA-----VLQLEAEE-KEMQKS 595
Query: 442 SADLNSLQRTCTNAF--------RLYSKTKPLPSKESIRRGK---DLPREGLHPMFKNVL 490
A +N+ QR R + +TK KE I + DL G K +
Sbjct: 596 EAQINTAQRLLEKGKEAPNPEPERSWFQTKEERKKEKIAKALQEFDLALRGKKKRKKFMK 655
Query: 491 EG---GELMALAFS--ERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDV-MKKKRAVH 544
E GE+ A S E LKA + + + A R++ + P + V KK++ V
Sbjct: 656 EAKKKGEMTAEERSQFEILKAQMFAERLAKRNRRAKRARAM--PEEEPVRAPAKKQKQVK 713
Query: 545 EKIINLVHQQRSSKSMEK-EVEPEADSLMAKEIKETHGSKRKAKTFKDEEYF 595
+ + + S K++++ P + K++ H +R+ FK + +
Sbjct: 714 KSVFDEELTNTSKKALKQYRAGPSFEE--RKKLGLPH--QRRGGNFKSKSRY 761
>TIGR_CMR|SO_1383 [details] [associations]
symbol:SO_1383 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_717003.1
ProteinModelPortal:Q8EH47 GeneID:1169204 KEGG:son:SO_1383
PATRIC:23522420 OMA:SEVVHGE ProtClustDB:CLSK906234 Uniprot:Q8EH47
Length = 433
Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
Identities = 129/369 (34%), Positives = 210/369 (56%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FES + P + RAI GY+ TPIQ++ +P I G DV+A A+TG+GKTAAF +P+LQ+
Sbjct: 3 FESFSFCPEILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQK 62
Query: 85 LNQHVPQ---GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
+ ++ + R LIL+PTR+LA Q + + +Y + + + GG +E+Q ++L
Sbjct: 63 MVENPSETLKSNTRVLILTPTRELAAQVAENVEAYSKYLNFSVLTIYGGVKVETQAQKLK 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ DII+ATPGRL+ HL+ ++SL SV+++V DEAD + MGF+ + KIL +++ RQ
Sbjct: 123 RGADIIVATPGRLLEHLTAC-NLSLSSVDFLVLDEADRMLDMGFSADIQKILQAVNKKRQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
LLFSAT SA+ + A + P ++ D + + + + Q K L +I +
Sbjct: 182 NLLFSATFSSAVKKLANEMMIKPQVISADKQNTTADTVSQVVYPVEQRRKRELLSELIGK 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ QQ L+F +T+ + L +G+ V +G+ Q +R+ + F + K L+
Sbjct: 242 --KNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFVSGKVRVLV 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDL 381
T+VAARG+DIP L+ V+N+D P + +VHR+ SFV+ E+ L D+
Sbjct: 300 ATEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLADI 359
Query: 382 HLFLSKPIR 390
+ + IR
Sbjct: 360 EKLIGQKIR 368
>CGD|CAL0000056 [details] [associations]
symbol:orf19.7546 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14777 EMBL:AR550432 RefSeq:XP_719308.1
ProteinModelPortal:Q5ACU6 SMR:Q5ACU6 STRING:Q5ACU6 GeneID:3639008
KEGG:cal:CaO19.7546 Uniprot:Q5ACU6
Length = 539
Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
Identities = 137/393 (34%), Positives = 214/393 (54%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ LNL P++ +I+ + PTPIQ + +P L G D++ +A+TGSGKTAAF +P+LQ
Sbjct: 125 FKELNLVPDLLESIESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQS 184
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L H Q AL+L+PTR+L Q LG LR S +VGG M Q +L + P
Sbjct: 185 L-WHAQQPYF-ALVLAPTRELTFQIKDTFDALGSSMGLRSSCIVGGMDMMDQARDLMRKP 242
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
+I+ATPGR+M HL + SLK+++Y+V DEAD L M F L KIL + R T L
Sbjct: 243 HVIVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIPIKRTTYL 302
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKI--SPDLKLAFFTLRQEEKHAALLYMIREH 262
FSAT+ + + + +A L +P VR+ V +K + +L + + K+ L++++ E
Sbjct: 303 FSATMTNKIEKLQRASLHNP--VRVAVSSKYQTADNLVQSMMLVNDGYKNTILIHLLNEF 360
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
+ + ++F T H + +L R G +G + Q R +++F++ + L+
Sbjct: 361 MG--KSIIVFTRTVAHAQRTALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNQANILVA 418
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLH 382
TDVAARG+DIP +D VIN+D P K ++HRV S +T D+ L +
Sbjct: 419 TDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEMYLRIE 478
Query: 383 LFLSKPIRAAPSEEEVLLD-MDGVMSKIDQAIA 414
L K + P E++ + +D + +D+A A
Sbjct: 479 SVLGKKL---PKEDKPPKEVLDALHVHVDKATA 508
>UNIPROTKB|J9P9C6 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AAEX03013992
Ensembl:ENSCAFT00000046251 Uniprot:J9P9C6
Length = 788
Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
Identities = 174/594 (29%), Positives = 295/594 (49%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ +NLS + +AI G+K PTPIQ+ +P+ L G D+ A A TG+GKTAAF +P+L+R
Sbjct: 210 FQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLER 269
Query: 85 LNQHVPQGGV-RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L Q V R L+L PTR+L +Q TK+L ++ ++ L VGG ++SQ L
Sbjct: 270 LIYKPRQSPVTRVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDVKSQEAALRAA 329
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
PDI+IATPGRL+ HL L S+E ++ DEAD + F EQ+ +I+ S +RQT+
Sbjct: 330 PDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTM 389
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR--QEEKHAALLYMIRE 261
LFSAT+ + + A L++P + ++ +T ++P L+ F +R +E A++ +
Sbjct: 390 LFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDREAIVAALLT 449
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+D ++F TK +++L GL+ +G++ Q R + RF+ + L+
Sbjct: 450 RTFTDH-VMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILV 508
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDL 381
TDVAARG+DI + VIN+ P K +VHRV S V E+ L ++
Sbjct: 509 ATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEI 568
Query: 382 HLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDS 441
P++A ++V+L + K+++ +Y V+ L ++ +E+ S
Sbjct: 569 VKAAKAPVKARILPQDVILKFRDKIEKMEK------DVYA-----VLQLEAEE-KELQQS 616
Query: 442 SADLNSLQRT--------CTN--AFRLYSKTKPLPSKESIRRGK---DLPREGLHP---M 485
A +N+ +R +N R + +TK KE I + DL G
Sbjct: 617 EAQINTAKRLLEREKGKEASNHEPERSWFQTKEERKKEKIAKALQEFDLALRGKKKRKKF 676
Query: 486 FKNVLEGGELMALAFS--ERLKAFRPKQTILEAEGEAARSKHLQGPSSQWV-DVMKKKRA 542
K+ + GE+ A S E LKA + + + A R++ + P + KK++
Sbjct: 677 MKDAKKKGEMTAEERSQFEILKAQMFAERLAKRNRRAKRARAM--PEEEPARGPAKKQKQ 734
Query: 543 VHEKIINLVHQQRSSKSMEK-EVEPEADSLMAKEIKETHGSKRKAKTFKDEEYF 595
V++ + + S K++++ P + K++ H +R+ FK + +
Sbjct: 735 VNKSVFDEELTNTSRKALKQYRAGPSFEE--RKQLGLPH--QRRGGNFKSKSRY 784
>MGI|MGI:2385884 [details] [associations]
symbol:Ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 27"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2385884 GO:GO:0005524
GO:GO:0005634 EMBL:CH466551 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:55661
GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH OrthoDB:EOG4NVZJV
EMBL:AK134274 EMBL:AK138442 EMBL:AL591711 EMBL:BC011321
EMBL:BC024730 EMBL:BC026381 IPI:IPI00122038 IPI:IPI00230236
RefSeq:NP_694705.2 UniGene:Mm.295031 ProteinModelPortal:Q921N6
SMR:Q921N6 PhosphoSite:Q921N6 PaxDb:Q921N6 PRIDE:Q921N6
Ensembl:ENSMUST00000018143 Ensembl:ENSMUST00000150571 GeneID:228889
KEGG:mmu:228889 UCSC:uc008nza.1 InParanoid:Q3UUG2 NextBio:379240
Bgee:Q921N6 CleanEx:MM_DDX27 Genevestigator:Q921N6
GermOnline:ENSMUSG00000017999 Uniprot:Q921N6
Length = 760
Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
Identities = 165/557 (29%), Positives = 276/557 (49%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ +NLS + +AI G+K PTPIQ+ +P+ L G D+ A A TG+GKTAAF +P+L+R
Sbjct: 186 FQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLER 245
Query: 85 LNQHVPQGGV-RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L Q V R L+L PTR+L +Q TK+L ++ + L VGG ++SQ L
Sbjct: 246 LIYKPRQAAVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAA 305
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
PDI+IATPGRL+ HL L S+E ++ DEAD + F EQ+ +I+ S +RQT+
Sbjct: 306 PDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTM 365
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR--QEEKHAALLYMIRE 261
LFSAT+ + + A L++P + ++ +T ++P L+ F +R +E A++ +
Sbjct: 366 LFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLM 425
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+D ++F TK +++L GL+ +G++ Q R + RF+ + L+
Sbjct: 426 RTFTDH-VMLFTQTKKQAHRMHILLGLLGLQVGELHGNLSQTQRLEALRRFKDEQIDILV 484
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDL 381
TDVAARG+DI + VIN+ P K +VHRV S V E+ L ++
Sbjct: 485 ATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEI 544
Query: 382 HLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDS 441
P++A ++V+L + K+++ +Y V+ L ++ +E+ S
Sbjct: 545 VKAAKAPVKARILPQDVILKFRDKIEKLEK------DVYA-----VLQLEAEE-KEMQQS 592
Query: 442 SADLNSLQRTCTNAF--------RLYSKTKPLPSKESIRRGK---DLPREGLHP---MFK 487
A +++ QR R + +TK KE I + DL G K
Sbjct: 593 EAQIDTAQRLLAKGKETADQEPERSWFQTKEERKKEKIAKALQEFDLALRGKKKRKKFMK 652
Query: 488 NVLEGGELMALAFS--ERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHE 545
+ + GE+ A S E LKA + + + R++ + P + KK++ +
Sbjct: 653 DAKKKGEMTAEERSQFEILKAQMFAERLAKRNRRTKRARAM--PEDEPTGPAKKQKQQQK 710
Query: 546 KIINLVHQQRSSKSMEK 562
+ + S K++++
Sbjct: 711 SVFDEELTNTSKKALKQ 727
>SGD|S000001107 [details] [associations]
symbol:RRP3 "Protein involved in rRNA processing"
species:4932 "Saccharomyces cerevisiae" [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000462 "maturation of
SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IC] [GO:0006364 "rRNA processing"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000001107 GO:GO:0005524
GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:U00061 HOGENOM:HOG000268802
GO:GO:0000462 GeneTree:ENSGT00670000098028 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P EMBL:AY389302 EMBL:AY389303 PIR:S46713
RefSeq:NP_011932.2 ProteinModelPortal:P38712 SMR:P38712
DIP:DIP-6533N IntAct:P38712 MINT:MINT-518716 STRING:P38712
PaxDb:P38712 PeptideAtlas:P38712 EnsemblFungi:YHR065C GeneID:856462
KEGG:sce:YHR065C CYGD:YHR065c NextBio:982111 Genevestigator:P38712
GermOnline:YHR065C Uniprot:P38712
Length = 501
Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
Identities = 144/398 (36%), Positives = 213/398 (53%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F LNL P + +A K Y PTPIQ K +P L G D++ +A+TGSGKTAAF +P+L R
Sbjct: 83 FSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNR 142
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L H Q A IL+PTR+LA Q + LG +R + +VGG +M Q +L + P
Sbjct: 143 L-WH-DQEPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKP 200
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL-SENRQTL 203
IIIATPGRLM HL + SL+ ++++V DEAD L M F L +IL + ++ R T
Sbjct: 201 HIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTTY 260
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISP--DLKLAFFTLRQEEKHAALLYMIRE 261
LFSAT+ S + + +A L +P V+ V K L + K+ L+Y++ E
Sbjct: 261 LFSATMTSKIDKLQRASLTNP--VKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNE 318
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
I +IF TK + E L+ L + +GD++Q+ R + F+A K L+
Sbjct: 319 FIGKTM--IIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLDLFKAGKRSILV 376
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDL 381
TDVAARG+DIP +D V+N+D P K ++HRV S V+ D+ +L +
Sbjct: 377 ATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRI 436
Query: 382 HLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETI 419
L K + ++ ++L + +D+A NGE +
Sbjct: 437 EEVLGKKLPKESVDKNIILTL---RDSVDKA--NGEVV 469
>TIGR_CMR|GSU_0914 [details] [associations]
symbol:GSU_0914 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE017180
GenomeReviews:AE017180_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 OMA:KHRAKRV RefSeq:NP_951968.1
ProteinModelPortal:Q74EP8 GeneID:2687174 KEGG:gsu:GSU0914
PATRIC:22024603 ProtClustDB:CLSK924451
BioCyc:GSUL243231:GH27-925-MONOMER Uniprot:Q74EP8
Length = 447
Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
Identities = 133/367 (36%), Positives = 206/367 (56%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+S P V I GY+ PTPIQ + +P +++G DV+ +A+TG+GKTAAF +P+L R
Sbjct: 3 FKSFGFHPAVATGIAAAGYETPTPIQAQAIPAVMAGRDVMGLAQTGTGKTAAFALPILHR 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L Q +G VRAL+++PTR+LA Q LGR T LR + GG + Q ++L
Sbjct: 63 LQQG-ERGRVRALVIAPTRELAEQINDSFVTLGRQTRLRSVTVYGGVGVNPQVQKLKAGA 121
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
++++A PGRL+ H+++ + L +E +V DEAD +F MGF + ++L L RQTLL
Sbjct: 122 EVVVACPGRLLDHIAQ-GTIDLSRLEVLVLDEADQMFDMGFLPDIRRVLKHLPPRRQTLL 180
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLA--FFTLRQEEKHAALLYMIREH 262
FSAT+P + A+ L DP V + V T ++P + +A + + Q K LL ++R H
Sbjct: 181 FSATMPIDIRTLAQDILVDP--VTVQVGT-VAPAVTVAHALYPVEQHLKTPLLLELLR-H 236
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
++ LIF TKH + L + G + G++ Q+ R+ + FR L+
Sbjct: 237 TDTES-VLIFTRTKHRAKRLGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGTFQILVA 295
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLH 382
TD+AARGID+ + +VIN+D P + ++HR+ F+ VTS+D A + +
Sbjct: 296 TDIAARGIDVSQVSHVINYDIPDTAEAYIHRIGRTGRAARSGDAFTLVTSDDGAMVRAIE 355
Query: 383 LFLSKPI 389
L PI
Sbjct: 356 RSLGAPI 362
>UNIPROTKB|Q96GQ7 [details] [associations]
symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
CTD:55661 HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH EMBL:AY044431
EMBL:AF336851 EMBL:AL049766 EMBL:AL357560 EMBL:BC009304
EMBL:BC011927 EMBL:BC016060 EMBL:BC126287 EMBL:BC130275
EMBL:BC144125 EMBL:AK022979 EMBL:AK000603 EMBL:AF193054
EMBL:AF161377 IPI:IPI00293078 RefSeq:NP_060365.7 UniGene:Hs.129261
UniGene:Hs.65234 ProteinModelPortal:Q96GQ7 SMR:Q96GQ7 IntAct:Q96GQ7
MINT:MINT-1420816 STRING:Q96GQ7 PhosphoSite:Q96GQ7 DMDM:29427946
SWISS-2DPAGE:Q96GQ7 PaxDb:Q96GQ7 PeptideAtlas:Q96GQ7 PRIDE:Q96GQ7
DNASU:55661 Ensembl:ENST00000371764 GeneID:55661 KEGG:hsa:55661
UCSC:uc002xuh.3 GeneCards:GC20P047835 HGNC:HGNC:15837 HPA:HPA047087
neXtProt:NX_Q96GQ7 PharmGKB:PA27213 InParanoid:Q96GQ7
OrthoDB:EOG4NVZJV PhylomeDB:Q96GQ7 ChiTaRS:DDX27 GenomeRNAi:55661
NextBio:60399 ArrayExpress:Q96GQ7 Bgee:Q96GQ7 CleanEx:HS_DDX27
Genevestigator:Q96GQ7 GermOnline:ENSG00000124228 Uniprot:Q96GQ7
Length = 796
Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
Identities = 172/590 (29%), Positives = 288/590 (48%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ +NLS + +AI G+K PTPIQ+ +P+ L G D+ A A TG+GKTAAF +P+L+R
Sbjct: 220 FQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLER 279
Query: 85 LNQHVPQGGV-RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L Q V R L+L PTR+L +Q T++L ++ ++ L VGG ++SQ L
Sbjct: 280 LIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAA 339
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
PDI+IATPGRL+ HL L S+E ++ DEAD + F EQ+ +I+ S +RQT+
Sbjct: 340 PDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTM 399
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR--QEEKHAALLYMIRE 261
LFSAT+ + + A L++P + ++ +T ++P L+ F +R +E A++ +
Sbjct: 400 LFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLT 459
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+D ++F TK +++L GL+ +G++ Q R + RF+ + L+
Sbjct: 460 RTFTDH-VMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILV 518
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDL 381
TDVAARG+DI + VIN+ P K +VHRV S V ++ L ++
Sbjct: 519 ATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEI 578
Query: 382 HLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDS 441
P++A ++V+L + K+++ +Y V+ L ++ +E+ S
Sbjct: 579 VKAAKAPVKARILPQDVILKFRDKIEKMEK------DVYA-----VLQLEAEE-KEMQQS 626
Query: 442 SADLNSLQRTCTNAF--------RLYSKTKPLPSKESIRRGK---DLPREGLHP---MFK 487
A +N+ +R R + +TK KE I + DL G K
Sbjct: 627 EAQINTAKRLLEKGKEAVVQEPERSWFQTKEERKKEKIAKALQEFDLALRGKKKRKKFMK 686
Query: 488 NVLEGGELMALAFS--ERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHE 545
+ + GE+ A S E LKA + + + A R++ + P + V KK+ +
Sbjct: 687 DAKKKGEMTAEERSQFEILKAQMFAERLAKRNRRAKRARAM--PEEEPVRGPAKKQKQGK 744
Query: 546 KIINLVHQQRSSKSMEKEVEPEADSLMAKEIKETHGSKRKAKTFKDEEYF 595
K + +SK K+ K++ H +R+ FK + +
Sbjct: 745 KSVFDEELTNTSKKALKQYRAGPSFEERKQLGLPH--QRRGGNFKSKSRY 792
>UNIPROTKB|F1Q073 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:AAEX03013992
Ensembl:ENSCAFT00000018089 Uniprot:F1Q073
Length = 767
Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
Identities = 141/429 (32%), Positives = 231/429 (53%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ +NLS + +AI G+K PTPIQ+ +P+ L G D+ A A TG+GKTAAF +P+L+R
Sbjct: 189 FQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLER 248
Query: 85 LNQHVPQGGV-RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L Q V R L+L PTR+L +Q TK+L ++ ++ L VGG ++SQ L
Sbjct: 249 LIYKPRQSPVTRVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDVKSQEAALRAA 308
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
PDI+IATPGRL+ HL L S+E ++ DEAD + F EQ+ +I+ S +RQT+
Sbjct: 309 PDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTM 368
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR--QEEKHAALLYMIRE 261
LFSAT+ + + A L++P + ++ +T ++P L+ F +R +E A++ +
Sbjct: 369 LFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDREAIVAALLT 428
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+D ++F TK +++L GL+ +G++ Q R + RF+ + L+
Sbjct: 429 RTFTDH-VMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILV 487
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDL 381
TDVAARG+DI + VIN+ P K +VHRV S V E+ L ++
Sbjct: 488 ATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEI 547
Query: 382 HLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDS 441
P++A ++V+L + K+++ +Y V+ L ++ +E+ S
Sbjct: 548 VKAAKAPVKARILPQDVILKFRDKIEKMEK------DVYA-----VLQLEAEE-KELQQS 595
Query: 442 SADLNSLQR 450
A +N+ +R
Sbjct: 596 EAQINTAKR 604
>ZFIN|ZDB-GENE-050522-359 [details] [associations]
symbol:zgc:112350 "zgc:112350" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050522-359 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG100512 KO:K14777
EMBL:BC095776 IPI:IPI00488135 RefSeq:NP_001018522.1
UniGene:Dr.84733 ProteinModelPortal:Q502B4 SMR:Q502B4 GeneID:553715
KEGG:dre:553715 NextBio:20880445 Uniprot:Q502B4
Length = 512
Score = 561 (202.5 bits), Expect = 1.8e-56, Sum P(2) = 1.8e-56
Identities = 129/383 (33%), Positives = 216/383 (56%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L ++ + A + G+K PT IQ + +P+ L G DV+ +A TGSGKT AF VP+LQ
Sbjct: 81 FKELGVTEVLCEACDQLGWKKPTKIQIEAIPVALQGRDVIGLAETGSGKTGAFAVPVLQS 140
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L + + L+L+PTR+LA Q + LG ++ +++VGG M SQ LA+ P
Sbjct: 141 LLACAQR--LHTLVLTPTRELAFQIAEQFDALGSSIGVKTAVIVGGIDMMSQALVLAKKP 198
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
++IATPGRL+ H+ + +L++++Y+V DEAD + M F ++ KIL + +R+T L
Sbjct: 199 HVVIATPGRLIDHMENTKGFNLRALKYLVMDEADRILNMDFESEVDKILKVIPRDRRTFL 258
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHA-ALLYMIREHI 263
FSAT+ + + +A L+DP V+ V +K + KL F + K+ L I +
Sbjct: 259 FSATMTKKVQKLQRAALQDP--VKCSVSSKYATVDKLQQFYIFIPSKYKDCYLVSILNEL 316
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+ + ++F T ++ + + +L R G+ +G M Q+ R +++F+++ L+ T
Sbjct: 317 AGNS-FMVFCGTCNNTQRVALLLRNLGITAIPLHGQMSQNKRLGALNKFKSKSRSVLLAT 375
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHL 383
DVA+RG+DIP +D VIN+D P K ++HRV +FVT D+ +
Sbjct: 376 DVASRGLDIPHVDCVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRIEA 435
Query: 384 FLSKPIRAAPS-EEEVLLDMDGV 405
+ K + A P+ EEEV++ ++ V
Sbjct: 436 LIGKKLPAFPTQEEEVMMLVERV 458
Score = 38 (18.4 bits), Expect = 1.8e-56, Sum P(2) = 1.8e-56
Identities = 17/69 (24%), Positives = 29/69 (42%)
Query: 519 EAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKSMEKEVEPEADSLMAKEIKE 578
EA K L +Q +VM V E + +S EK P A + ++ ++
Sbjct: 434 EALIGKKLPAFPTQEEEVMMLVERVSEA--QRFARIEMKESSEKRKRPSAAQEVDEDGEQ 491
Query: 579 THGSKRKAK 587
+ G ++K K
Sbjct: 492 SSGVRKKVK 500
>UNIPROTKB|Q83DM8 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8 GeneID:1208557
KEGG:cbu:CBU_0670 PATRIC:17930019 ProtClustDB:CLSK914228
BioCyc:CBUR227377:GJ7S-666-MONOMER Uniprot:Q83DM8
Length = 420
Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
Identities = 137/380 (36%), Positives = 209/380 (55%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE L LS + RAI+ +GY PTP+QR+ +P+IL DV+ A+TG+GKTA F +P+LQR
Sbjct: 12 FEVLGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQR 71
Query: 85 LN------QHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138
L Q + +RALIL+PTR+LA+Q + + G+Y L+ +++ GG S++ Q
Sbjct: 72 LFVSRPPLQRSAKPVIRALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQIN 131
Query: 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198
L + DI++ATPGRL+ +++ ++L VE+ V DEAD + MGF + +IL L E
Sbjct: 132 HLRRGVDILVATPGRLLDLVNQGV-LNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLPE 190
Query: 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258
+RQ LLFSAT + E L P L+ + + + + ++ K L +M
Sbjct: 191 SRQNLLFSATFSKEIKELTDKLLHSPALIEVARRNTAAARITHVVHPVDRQRKRELLSFM 250
Query: 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
I + +Q L+F TKH L+ +GL + +G+ Q AR +++F+ K
Sbjct: 251 IGS--KNWRQVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQGKIR 308
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYL 378
L+ TDVAARG+DI L +VIN++ P K +VHRV S V+ +++ L
Sbjct: 309 VLVATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSGDEVRLL 368
Query: 379 LDLHLFL-SK-PIRAAPSEE 396
D+ L SK P P E
Sbjct: 369 RDIEKLLQSKMPQEVIPGYE 388
>TIGR_CMR|CBU_0670 [details] [associations]
symbol:CBU_0670 "ATP-dependent RNA helicase RhlE,
putative" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:HLIKQHN RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8
GeneID:1208557 KEGG:cbu:CBU_0670 PATRIC:17930019
ProtClustDB:CLSK914228 BioCyc:CBUR227377:GJ7S-666-MONOMER
Uniprot:Q83DM8
Length = 420
Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
Identities = 137/380 (36%), Positives = 209/380 (55%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE L LS + RAI+ +GY PTP+QR+ +P+IL DV+ A+TG+GKTA F +P+LQR
Sbjct: 12 FEVLGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQR 71
Query: 85 LN------QHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138
L Q + +RALIL+PTR+LA+Q + + G+Y L+ +++ GG S++ Q
Sbjct: 72 LFVSRPPLQRSAKPVIRALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQIN 131
Query: 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198
L + DI++ATPGRL+ +++ ++L VE+ V DEAD + MGF + +IL L E
Sbjct: 132 HLRRGVDILVATPGRLLDLVNQGV-LNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLPE 190
Query: 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258
+RQ LLFSAT + E L P L+ + + + + ++ K L +M
Sbjct: 191 SRQNLLFSATFSKEIKELTDKLLHSPALIEVARRNTAAARITHVVHPVDRQRKRELLSFM 250
Query: 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
I + +Q L+F TKH L+ +GL + +G+ Q AR +++F+ K
Sbjct: 251 IGS--KNWRQVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQGKIR 308
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYL 378
L+ TDVAARG+DI L +VIN++ P K +VHRV S V+ +++ L
Sbjct: 309 VLVATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSGDEVRLL 368
Query: 379 LDLHLFL-SK-PIRAAPSEE 396
D+ L SK P P E
Sbjct: 369 RDIEKLLQSKMPQEVIPGYE 388
>TIGR_CMR|CPS_1125 [details] [associations]
symbol:CPS_1125 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_267868.1
ProteinModelPortal:Q486Z7 STRING:Q486Z7 GeneID:3520292
KEGG:cps:CPS_1125 PATRIC:21465509 OMA:AYSKYLR
BioCyc:CPSY167879:GI48-1206-MONOMER Uniprot:Q486Z7
Length = 466
Score = 579 (208.9 bits), Expect = 3.3e-56, P = 3.3e-56
Identities = 126/358 (35%), Positives = 198/358 (55%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L LS + +A++ KGY+ P+PIQ + +P ++SG DV+A A+TG+GKTA F +P+LQR
Sbjct: 8 FTDLGLSEALLKAVRDKGYETPSPIQAQAIPAVISGRDVMAAAQTGTGKTAGFTLPLLQR 67
Query: 85 LNQH----VPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
L+ V VRALIL+PTR+LA Q + + G+Y +L ++ GG + Q L
Sbjct: 68 LSSSKGNKVSSNNVRALILTPTRELAAQISESIEVYGKYLNLHSMVVFGGVKINPQIARL 127
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
Q D+++ATPGRL+ L + +E + DEAD + MGF + K++ L ++R
Sbjct: 128 RQGVDVLVATPGRLLD-LYNQRAVKFSQLEVFILDEADRMLDMGFIRDIKKLMTALPKDR 186
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
Q LLFSAT + AK + +P + +D + + + + ++ K A L ++I+
Sbjct: 187 QNLLFSATFSPEIRALAKGMVNNPLEISVDAENSTAEKVTQWLTAVDKKRKPAVLTHLIK 246
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
E+ + QQ L+F TKH L EGL + +G+ Q AR ++ F+ L
Sbjct: 247 EN--NWQQVLVFTKTKHGANKLTKHLEAEGLTAAAIHGNKSQGARTKALAAFKDGSVKIL 304
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYL 378
+ TD+AARGIDI LL V+N+D P P+ +VHR+ S V ++++ L
Sbjct: 305 VATDIAARGIDIDLLPQVVNFDLPNVPEDYVHRIGRTARAGNTGQALSLVCADELDLL 362
>WB|WBGene00022148 [details] [associations]
symbol:Y71G12B.8 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:FO080942 RefSeq:NP_490891.2
ProteinModelPortal:Q95XM9 SMR:Q95XM9 PaxDb:Q95XM9
EnsemblMetazoa:Y71G12B.8 GeneID:171743 KEGG:cel:CELE_Y71G12B.8
UCSC:Y71G12B.8 CTD:171743 WormBase:Y71G12B.8 InParanoid:Q95XM9
OMA:ETDREAM NextBio:872509 Uniprot:Q95XM9
Length = 739
Score = 539 (194.8 bits), Expect = 6.1e-56, Sum P(2) = 6.1e-56
Identities = 119/360 (33%), Positives = 200/360 (55%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE +NLS + +A GY PTPIQ+ +P+ L+G D+ A A TG+GKTAAF++P+L+R
Sbjct: 150 FEQMNLSRQILKACSGAGYSDPTPIQQACIPVALTGKDICACAATGTGKTAAFVLPILER 209
Query: 85 LNQHVPQGG--VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
+ P+G R L+L PTR+LA+Q + ++L + L + L GG +++Q L
Sbjct: 210 MIYR-PKGASCTRVLVLVPTRELAIQVFQVFRKLSTFIQLEVCLCAGGLDLKAQEAALRS 268
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
PD+++ATPGRL+ HL +L ++E +V DEAD + F +Q+++++ ++NRQT
Sbjct: 269 GPDVVVATPGRLIDHLHNSPSFNLSNIEVLVLDEADRMLEEAFRDQMNELIRLCAQNRQT 328
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR---QEEKHAALLYMI 259
LLFSAT+ + E A L+ P + ++ +T + L+ F +R + ++ A + ++
Sbjct: 329 LLFSATMTEEIDELASMSLQKPVKIFINENTDTALKLRQEFIRIRAGRETDREAMVAALV 388
Query: 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319
++ T++FV TK + + +L G++ + Q R +S+F+ +
Sbjct: 389 TRTFQTN--TIVFVRTKKDCQRMQILLGLLGIKVGQMQSSLTQGQRIESLSKFKKAEIDV 446
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLL 379
L+ TD+A+RG+DI + VIN + P K ++HRV S V ED LL
Sbjct: 447 LVSTDLASRGLDIEGVQTVINMNMPKSIKQYIHRVGRTARAGKAGRSISLV-GEDERKLL 505
Score = 55 (24.4 bits), Expect = 6.1e-56, Sum P(2) = 6.1e-56
Identities = 35/165 (21%), Positives = 71/165 (43%)
Query: 435 VREIIDSSADLNSLQRTCT----NAFR--LYSKTKPLPS-KESIRRGKDLP-REGLHPMF 486
++EI++S+AD QR A+R + + + E R K+L E
Sbjct: 505 LKEIVNSNADRTLKQRLVAPEVVEAYRRRIDELEETIQQIDEEDRAEKELRIAEASMAKT 564
Query: 487 KNVLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAV--- 543
+N LE GE A +ER + + K++ +E + + + ++ + + + K +
Sbjct: 565 QNALEVGENGG-APAER-RVWMMKESQIEKQRKREEKRQMKVDARKKAEAAKTPEDIQIE 622
Query: 544 HEKIINLVHQQRSSKSMEKEVEPEADSLMAKEIKETHGSKRKAKT 588
HE ++ +R+ S K + +S K + +K+KA +
Sbjct: 623 HEAAFHVRAAKRARHSKNKRIRAVVESAGTKGAGKAAQNKKKASS 667
>UNIPROTKB|F1NYX0 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 OMA:CQLLSMT EMBL:AADN02071779
EMBL:AADN02071780 IPI:IPI00822654 Ensembl:ENSGALT00000035055
ArrayExpress:F1NYX0 Uniprot:F1NYX0
Length = 482
Score = 534 (193.0 bits), Expect = 6.1e-56, Sum P(2) = 6.1e-56
Identities = 135/386 (34%), Positives = 206/386 (53%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L L+P + ++ G PTP+Q +P IL G D + A+TGSGKTAAF++P+LQ
Sbjct: 7 FRELGLAPWLVEQARQMGLSRPTPVQASCIPPILQGRDCLGCAKTGSGKTAAFVLPVLQV 66
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L++ P G + L+L+PTR+LA Q + + LG+ L+ ++VGG M +Q EL++ P
Sbjct: 67 LSED-PYG-IFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCVVVGGLDMVAQALELSRKP 124
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG---FAEQLHKILGQLSENRQ 201
++IATPGRL HL SLK ++++V DEAD L G F L IL + RQ
Sbjct: 125 HVVIATPGRLADHLRSSNTFSLKKLKFLVLDEADRLLEQGCADFTADLEVILEAVPARRQ 184
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR- 260
TLLFSATL L E + P + + +L + + + K A L+++I+
Sbjct: 185 TLLFSATLTDTLNELKSLAMNRPFFWEAASEVRTVDELDQRYLLVPEAVKDAYLVHLIQT 244
Query: 261 ---EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVC-YGDMDQDARKIHVSRFRARK 316
EH D +IF T + LN++ R+ PSV + M Q R +++F++
Sbjct: 245 FQDEH--EDWSIIIFTKTCKECQILNMMLRKFSF-PSVALHSMMKQRQRFAALAKFKSSI 301
Query: 317 TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMA 376
LI TDVAARG+DIP + VIN + P PKI++HRV + VT D+
Sbjct: 302 FKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGISITMVTQYDIH 361
Query: 377 YLLDLHLFLSKPIRAAPSEEEVLLDM 402
+ + + ++ EE+++LD+
Sbjct: 362 LVHAIEEEIKLKLQEFSVEEKLVLDI 387
Score = 60 (26.2 bits), Expect = 6.1e-56, Sum P(2) = 6.1e-56
Identities = 21/87 (24%), Positives = 40/87 (45%)
Query: 494 ELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQ 553
EL + F E+ + + KQ ILE + K ++ + KK EK+ + +
Sbjct: 401 ELEYMDFDEKKEINKRKQMILEGKDPDLEEKR----KAELAKIKKKNNKFREKVQQTLQE 456
Query: 554 QRS---SKSMEKEVEPEADSLMAKEIK 577
++ + ++K++E + L AKE K
Sbjct: 457 KKQLQMKRKLQKKME-RRNKLHAKEEK 482
>UNIPROTKB|F1NQV5 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:AADN02019007 IPI:IPI00579774
Ensembl:ENSGALT00000039062 ArrayExpress:F1NQV5 Uniprot:F1NQV5
Length = 758
Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
Identities = 131/379 (34%), Positives = 208/379 (54%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ +NLS + +AI G+K PTPIQ+ +P+ L G D+ A A TG+GKTAAF++P+L+R
Sbjct: 182 FQDMNLSRPLLKAITALGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFILPVLER 241
Query: 85 LNQHVPQGGV-RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L Q + R L+L PTR+L +Q TK+L +++ + L VGG +++Q L
Sbjct: 242 LIYKPRQAPITRVLVLVPTRELGIQVHSVTKQLAQFSSVTTCLAVGGLDVKTQEAALRSG 301
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
PDI+IATPGRL+ HL L SVE ++ DEAD + F EQ+ +I+ S +RQT+
Sbjct: 302 PDILIATPGRLIDHLHNCPSFHLSSVEVLILDEADRMLDEYFEEQMKEIIRLCSRHRQTM 361
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR--QEEKHAALLYMIRE 261
LFSAT+ + + A L++P + ++ +T ++P L+ F +R +E A++ +
Sbjct: 362 LFSATMTEEVKDLASVSLKNPTRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVSALLT 421
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
D ++F TK +++L GL +G++ Q R + RF+ + L+
Sbjct: 422 RTFPDH-VMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQAQRLEALRRFKDEQIDILV 480
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDL 381
TDVAARG+DI + VIN+ P K +VHRV S V E+ L ++
Sbjct: 481 ATDVAARGLDIEGVKTVINFTMPNTTKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEI 540
Query: 382 HLFLSKPIRAAPSEEEVLL 400
P++A ++V+L
Sbjct: 541 VKAAKTPVKARILPQDVIL 559
>TAIR|locus:2130918 [details] [associations]
symbol:AT4G16630 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003723 EMBL:Z97341 EMBL:AL161544 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000265456 KO:K13181
OMA:RIRKRDH EMBL:AJ010475 EMBL:AK228353 IPI:IPI00542014 PIR:D71433
PIR:T51310 RefSeq:NP_193396.3 UniGene:At.49
ProteinModelPortal:Q9ZRZ8 SMR:Q9ZRZ8 IntAct:Q9ZRZ8 STRING:Q9ZRZ8
PaxDb:Q9ZRZ8 PRIDE:Q9ZRZ8 EnsemblPlants:AT4G16630.1 GeneID:827364
KEGG:ath:AT4G16630 GeneFarm:955 TAIR:At4g16630 InParanoid:Q9ZRZ8
PhylomeDB:Q9ZRZ8 ProtClustDB:CLSN2690957 Genevestigator:Q9ZRZ8
GermOnline:AT4G16630 Uniprot:Q9ZRZ8
Length = 789
Score = 551 (199.0 bits), Expect = 9.6e-56, Sum P(2) = 9.6e-56
Identities = 138/400 (34%), Positives = 211/400 (52%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F LNLS + RA + GYK PTPIQ +PL L+G D+ A A TGSGKTAAF +P L+R
Sbjct: 169 FMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLER 228
Query: 85 LNQHVPQG-GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L + R LIL+PTR+LA+Q + L ++TD++ L+VGG S+ Q L
Sbjct: 229 LLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLRSM 288
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
PDI++ATPGR++ HL + L + ++ DEAD L GFA ++ +++ + RQT+
Sbjct: 289 PDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPKRRQTM 348
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR---QEEKHAALLYMIR 260
LFSAT+ + E K L P + D + P L +R + + A LL +
Sbjct: 349 LFSATMTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIRRTREANQEAVLLSLCT 408
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
S + +IF TK L +LF GL+ + +G++ Q R + FR ++ FL
Sbjct: 409 RTFKS--KVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEVDFL 466
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLD 380
I TDVAARG+DI + VIN+ P + +VHRV +FVT D + L
Sbjct: 467 IATDVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVTDSDRSLLKV 526
Query: 381 LHLFLSKPIRAAPSEEEVLLDMDGVMSKI-DQ--AIANGE 417
+ + +++ E+ ++ ++ ++ DQ A+ + E
Sbjct: 527 IAKKVGSKLKSRVIPEQSIVKWSQIIDEMEDQYSAVISAE 566
Score = 43 (20.2 bits), Expect = 9.6e-56, Sum P(2) = 9.6e-56
Identities = 15/61 (24%), Positives = 29/61 (47%)
Query: 621 RLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT 680
+LEAA +++ D+ G +++ + +KRG+ K + G +K + KA
Sbjct: 656 KLEAA-REMLEDNEGEEEEEDEEGD-EKRGRSRGKDKKKQETDKKGLTLKDLGYMRAKAV 713
Query: 681 K 681
K
Sbjct: 714 K 714
Score = 37 (18.1 bits), Expect = 4.1e-55, Sum P(2) = 4.1e-55
Identities = 13/57 (22%), Positives = 21/57 (36%)
Query: 538 KKKRAVHEKIINLVHQQRSSKSMEKEVEPEADSLMAKEIKETHGSKRKAKTFKDEEY 594
+KKR E ++ + E E E + K+ + +K T KD Y
Sbjct: 651 RKKRRKLEAAREMLEDNEGEEEEEDEEGDEKRGRSRGKDKKKQETDKKGLTLKDLGY 707
>UNIPROTKB|Q9KMW4 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
Identities = 128/351 (36%), Positives = 198/351 (56%)
Query: 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQ 83
GF SL LS + +AI+ KGY P+PIQ + +P +L+G DV+A A+TG+GKTA F +P+L+
Sbjct: 2 GFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE 61
Query: 84 RLNQ--HVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L + V VRALIL+PTR+LA Q GR+ L+ +++ GG + Q + +
Sbjct: 62 LLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMC 121
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ DI++ATPGRLM L + +E +V DEAD + MGF +HKIL L E RQ
Sbjct: 122 KGADILVATPGRLMD-LYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQ 180
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
LLFSAT + + E AK + +P + + + ++ + ++K L+ +++E
Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKE 240
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ QQ L+F+ TKH L E+GL + +G+ Q AR ++ F+A + L+
Sbjct: 241 --GNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILV 298
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTS 372
TD+AARGIDIP L V+N++ P + +VHR+ S V++
Sbjct: 299 ATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSA 349
>TIGR_CMR|VC_A0204 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
Identities = 128/351 (36%), Positives = 198/351 (56%)
Query: 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQ 83
GF SL LS + +AI+ KGY P+PIQ + +P +L+G DV+A A+TG+GKTA F +P+L+
Sbjct: 2 GFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE 61
Query: 84 RLNQ--HVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L + V VRALIL+PTR+LA Q GR+ L+ +++ GG + Q + +
Sbjct: 62 LLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMC 121
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ DI++ATPGRLM L + +E +V DEAD + MGF +HKIL L E RQ
Sbjct: 122 KGADILVATPGRLMD-LYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQ 180
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
LLFSAT + + E AK + +P + + + ++ + ++K L+ +++E
Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKE 240
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ QQ L+F+ TKH L E+GL + +G+ Q AR ++ F+A + L+
Sbjct: 241 --GNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILV 298
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTS 372
TD+AARGIDIP L V+N++ P + +VHR+ S V++
Sbjct: 299 ATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSA 349
>ZFIN|ZDB-GENE-031001-8 [details] [associations]
symbol:ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
27" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031001-8 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 CTD:55661 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 EMBL:AY648729 IPI:IPI00501087
RefSeq:NP_001002869.1 UniGene:Dr.76523 ProteinModelPortal:Q6DRN0
PRIDE:Q6DRN0 GeneID:378844 KEGG:dre:378844 InParanoid:Q6DRN0
NextBio:20813841 ArrayExpress:Q6DRN0 Bgee:Q6DRN0 Uniprot:Q6DRN0
Length = 776
Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
Identities = 166/563 (29%), Positives = 281/563 (49%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F +NLS + +AI G+K PTPIQ+ +P+ L G D+ A A TG+GKTAAF++P+L+R
Sbjct: 203 FHDMNLSRPLLKAISTMGFKQPTPIQKACVPVGLLGKDICACAATGTGKTAAFMLPVLER 262
Query: 85 LNQHVPQGGV-RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L + V R L+L PTR+L +Q ++L ++T + L VGG ++SQ L
Sbjct: 263 LIYKPRETQVTRVLVLVPTRELGIQVHTVARQLAQFTTISTCLAVGGLDLKSQEAALRAG 322
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
PD++IATPGRL+ HL L +E ++ DEAD + F EQ+ +I+ + RQT+
Sbjct: 323 PDVLIATPGRLIDHLHNTPSFELSQIEILILDEADRMLDEYFEEQMKEIIRMCAYQRQTM 382
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR--QEEKHAALLYMIRE 261
LFSAT+ + + A L+ P + ++ +T ++P L+ F +R +E A++ +
Sbjct: 383 LFSATMSEEVKDLASVSLKQPVRIFVNSNTDVAPYLRQEFVRIRPNKEGDREAIVAALLT 442
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
D ++F TK +++L GL+ +G++ Q R + RF+ + L+
Sbjct: 443 RTFQDH-VMLFTQTKKQAHRMHILLGLMGLKVGELHGNLSQTQRLESLRRFKDEQIDILV 501
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDL 381
TDVAARG+DI + VIN+ P K +VHRV S V + L ++
Sbjct: 502 ATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGKVGRSVSLVGETERKMLKEI 561
Query: 382 HLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDS 441
P++A +EV+L ++ K+++ +Y V+ L + +E+ S
Sbjct: 562 VKKAKFPVKARVIPQEVILKFRDLIEKLEK------DVYA-----VLCLEKEE-KEMAHS 609
Query: 442 SADLNSLQRTCTNAFRLYSKTKPLPS---KESIRRGKDLPREGLHPMFKNVLEGGELMAL 498
A ++S Q+ T + K LP + + R KD + L F L G + A
Sbjct: 610 EAQISSAQKRLTKS----EDEKQLPRTWFQTNEERKKDRMAKALQD-FDLALRGKKKRA- 663
Query: 499 AFSERLKAFRPKQTILE-AEGEAARSKHLQGPSSQWVDVMKKKRAVHE-KIINLVHQQRS 556
F ++ K R + T E A+ E +S+ +++ K+ RA+ E + ++ +
Sbjct: 664 QFLKQGK--RKELTAEERAQLEVLKSQMFAERAAKRERKQKRARAIPEDQPDKKALKKNA 721
Query: 557 SKSMEKEV-EPEADSLMAKEIKE 578
K+ +K V + E + K +K+
Sbjct: 722 GKAGKKSVFDKELTNTSKKNLKQ 744
>POMBASE|SPAC823.08c [details] [associations]
symbol:SPAC823.08c "ATP-dependent RNA helicase Rrp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC823.08c GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P RefSeq:NP_593835.1 ProteinModelPortal:Q9P6N8
SMR:Q9P6N8 STRING:Q9P6N8 EnsemblFungi:SPAC823.08c.1 GeneID:2543571
KEGG:spo:SPAC823.08c NextBio:20804578 Uniprot:Q9P6N8
Length = 465
Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
Identities = 137/404 (33%), Positives = 224/404 (55%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L + + A ++ G+K PTPIQ++ +P++L+ DV+ +A+TGSGKTAAF +P++Q
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQE 107
Query: 85 L-NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L N P A++L+PTR+LA Q + + +G +R ++VGG M +Q L++
Sbjct: 108 LWNNPSP---FFAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKK 164
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
P +++ TPGRLM HL + SLK+++Y++ DEAD L M F + KIL + R+TL
Sbjct: 165 PHVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLDMDFGPIIDKILKIIPHERRTL 224
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISP-DL---KLAFFTLRQEEKHAALLYMI 259
LFSAT+ S + + +A L P VR+ V +K S D + FF + ++ + L+Y++
Sbjct: 225 LFSATMTSKVEKLQRASLHQP--VRVAVSSKFSTVDTLIQRYLFFPFKHKDTY--LVYLV 280
Query: 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319
E + +IF T + + L +L R G +G + Q R +++F++
Sbjct: 281 NE--LAGNSIIIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKSGARST 338
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLL 379
L+ TDVAARG+DIPL+D VIN+D P K ++HRV + VT D+ L
Sbjct: 339 LVATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARAGRAGKSIALVTQYDLEPFL 398
Query: 380 DLHLFLSKPIRAAPSEEE-VLLDMDGVMSKIDQAIANGETIYGR 422
+ + K ++ ++E V L + V +AI + I+ R
Sbjct: 399 RIEATIGKKMQEYEIDKEGVFLLSERVGEAQREAIIQMKEIHDR 442
>UNIPROTKB|Q5ZLB0 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 CTD:51202
HOVERGEN:HBG100512 KO:K14777 OMA:IFIPSKF OrthoDB:EOG4TXBRS
EMBL:AADN02006011 EMBL:AADN02006010 EMBL:AJ719824 IPI:IPI00584081
RefSeq:NP_001007854.1 UniGene:Gga.13941 SMR:Q5ZLB0 STRING:Q5ZLB0
Ensembl:ENSGALT00000019245 GeneID:417959 KEGG:gga:417959
InParanoid:Q5ZLB0 NextBio:20821184 Uniprot:Q5ZLB0
Length = 453
Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
Identities = 136/380 (35%), Positives = 218/380 (57%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L ++ + A + G+KVPT IQ + +P+ L G D++ +A TGSGKT AF +P+LQ
Sbjct: 27 FKDLGVTDVLCEACDQLGWKVPTKIQVEAIPVALQGRDIIGLAETGSGKTGAFALPILQA 86
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGG-DSMESQFEELAQN 143
L PQ + AL+L+PTR+LA Q + + LG + +++VGG DSM SQ LA+
Sbjct: 87 LLD-APQR-LFALVLTPTRELAFQISEQFEALGSSIGVHSAVIVGGIDSM-SQSLALAKK 143
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
P IIIATPGRL+ HL + +L++++++V DEAD + M F ++ KIL + +R+T
Sbjct: 144 PHIIIATPGRLVDHLENTKGFNLRALKFLVMDEADRILNMDFETEVDKILKVIPRDRKTF 203
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLA--FFTLRQEEKHAALLYMIRE 261
LFSAT+ + + +A L++P V+ V +K KL + + + K + L+Y++ E
Sbjct: 204 LFSATMTKQVQKLQRAALKNP--VKCAVSSKYQTVEKLQQYYIFIPSKFKDSYLVYILNE 261
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ +IF ST ++ + +L R G +G M Q+ R +++F+A+ L+
Sbjct: 262 --LAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKARSILL 319
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDL 381
TDVA+RG+DIP +D VIN+D P K ++HRV +FVT D+ +
Sbjct: 320 ATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYDVELFQRI 379
Query: 382 HLFLSKPIRAAP-SEEEVLL 400
+ K + A P EEEV++
Sbjct: 380 EHLIGKKLPAFPMQEEEVMM 399
>UNIPROTKB|Q5L3G9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:235909 "Geobacillus kaustophilus HTA426" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR HSSP:Q58083 EMBL:BA000043 RefSeq:YP_146079.1
ProteinModelPortal:Q5L3G9 GeneID:3184893 GenomeReviews:BA000043_GR
KEGG:gka:GK0226 PATRIC:21961545 ProtClustDB:CLSK712472
BioCyc:GKAU235909:GJO7-260-MONOMER Uniprot:Q5L3G9
Length = 467
Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
Identities = 122/355 (34%), Positives = 202/355 (56%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L LS V +AI+R G++ TPIQ KT+PL L DV+ A+TG+GKTAAF +P++++
Sbjct: 4 FQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVEK 63
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
+N V V+AL+++PTR+LA+Q + ++G +R+ + GG +E Q L ++P
Sbjct: 64 VN--VKNSAVQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALKKHP 121
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
+I+ TPGR++ H++ + L+ V VV DEAD + MGF E + IL + RQTLL
Sbjct: 122 HVIVGTPGRIIDHINR-GTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAERQTLL 180
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P + A+ + +P LV++ P+++ + + +++K L ++ I
Sbjct: 181 FSATMPDPIRRIAERFMNEPELVKVKAKEMTVPNIQQYYLEVHEKKKFDILTRLL--DIQ 238
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSR-FRARKTMFLIVT 323
+ + ++F TK V+ L G +GD+ Q A+++ V R F+ L+ T
Sbjct: 239 APELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQ-AKRLSVLRKFKEGAIEILVAT 297
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYL 378
DVAARG+DI + +V N+D P P+ +VHR+ +FVT ++ L
Sbjct: 298 DVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQL 352
>UNIPROTKB|F1S7D9 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 CTD:54555 EMBL:CU640483
RefSeq:XP_003123587.1 UniGene:Ssc.79767 Ensembl:ENSSSCT00000025399
GeneID:100526038 KEGG:ssc:100526038 Uniprot:F1S7D9
Length = 483
Score = 530 (191.6 bits), Expect = 5.4e-55, Sum P(2) = 5.4e-55
Identities = 133/384 (34%), Positives = 199/384 (51%)
Query: 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQ 83
GF L LS + ++ G K PTP+Q +P IL G D + A+TGSGKTAAF++P+LQ
Sbjct: 3 GFAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQ 62
Query: 84 RLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
+L++ P G + L+L+PTR+LA Q + + LG+ L+ ++VGG M +Q EL++
Sbjct: 63 KLSED-PYG-IFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRK 120
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG---FAEQLHKILGQLSENR 200
P ++IATPGRL HL S+K + ++V DEAD L G F L IL + R
Sbjct: 121 PHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARR 180
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSATL L E P + L + + ++ K A L+++I+
Sbjct: 181 QTLLFSATLTDTLRELQSLATNQPFFWEAQAPVRTVEQLDQRYLLVPEKVKDAYLVHLIQ 240
Query: 261 ----EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK 316
EH D +IF +T + L ++ R+ + M Q R +++F++
Sbjct: 241 NFQDEH--EDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSI 298
Query: 317 TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMA 376
LI TDVA+RG+DIP + VIN + P PKI++HRV + VT D+
Sbjct: 299 YRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIH 358
Query: 377 YLLDLHLFLSKPIRAAPSEE-EVL 399
+ + + K + EE EVL
Sbjct: 359 LVHAIEEQIKKKLEEFSVEEAEVL 382
Score = 55 (24.4 bits), Expect = 5.4e-55, Sum P(2) = 5.4e-55
Identities = 17/75 (22%), Positives = 34/75 (45%)
Query: 494 ELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQ 553
+L A F E+ + + KQ ILE + +K ++ + +K R EK+ + +
Sbjct: 398 KLEAANFDEKKEINKRKQMILEGKDPDLEAKR----KAELAKIKQKNRRFKEKVEQALQR 453
Query: 554 QRSSKSMEKEVEPEA 568
Q++ ++ P A
Sbjct: 454 QKAGRAGHGGCPPRA 468
Score = 45 (20.9 bits), Expect = 6.1e-54, Sum P(2) = 6.1e-54
Identities = 13/59 (22%), Positives = 30/59 (50%)
Query: 534 VDVMKKKRAVHEKIINLVHQQRSSKSMEKEVEPEADSLMAKEIKETHGSKRKAKTFKDE 592
V+V++++ + + N ++ +K + +E + L AK E K+K + FK++
Sbjct: 388 VNVVRRECEIKLEAANFDEKKEINKRKQMILEGKDPDLEAKRKAELAKIKQKNRRFKEK 446
>UNIPROTKB|E2RBM7 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
OMA:EVRTVEQ GeneTree:ENSGT00670000098028 CTD:54555
EMBL:AAEX03012274 RefSeq:XP_541930.1 ProteinModelPortal:E2RBM7
Ensembl:ENSCAFT00000023054 GeneID:484814 KEGG:cfa:484814
NextBio:20858886 Uniprot:E2RBM7
Length = 488
Score = 528 (190.9 bits), Expect = 5.4e-55, Sum P(2) = 5.4e-55
Identities = 131/386 (33%), Positives = 199/386 (51%)
Query: 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQ 83
GF L LS + ++ G K PTP+Q +P IL G D + A+TGSGKTAAF++P+LQ
Sbjct: 3 GFAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQ 62
Query: 84 RLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
+L++ P G + L+L+PTR+LA Q + + LG+ L+ ++VGG M +Q EL++
Sbjct: 63 KLSED-PYG-IFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRK 120
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG---FAEQLHKILGQLSENR 200
P ++IATPGRL HL S+K + ++V DEAD L G F L IL + R
Sbjct: 121 PHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPTRR 180
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSATL L E P + L + + ++ K A L+++I+
Sbjct: 181 QTLLFSATLTDTLKELQGLATNQPFFWEAQAPVRTVEQLDQRYLLVPEKVKDAYLVHLIQ 240
Query: 261 ----EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK 316
EH D +IF +T + L ++ R+ + M Q R +++F++
Sbjct: 241 NFQDEH--EDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSI 298
Query: 317 TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMA 376
LI TDVA+RG+DIP + VIN + P PKI++HRV + VT D+
Sbjct: 299 YRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIH 358
Query: 377 YLLDLHLFLSKPIRAAPSEEEVLLDM 402
+ + + K + EE +L +
Sbjct: 359 LVHAIEEQIKKQLEELSVEEAKVLQI 384
Score = 57 (25.1 bits), Expect = 5.4e-55, Sum P(2) = 5.4e-55
Identities = 16/66 (24%), Positives = 33/66 (50%)
Query: 494 ELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQ 553
+L A F E+ + + KQ ILE + +K ++ + +K R EK+ + +
Sbjct: 398 KLEAANFDEKKEINKRKQLILEGKDPDLEAKR----KAELAKIKQKNRRFKEKVEQALQR 453
Query: 554 QRSSKS 559
Q++S++
Sbjct: 454 QKASRA 459
Score = 44 (20.5 bits), Expect = 1.3e-53, Sum P(2) = 1.3e-53
Identities = 13/59 (22%), Positives = 30/59 (50%)
Query: 534 VDVMKKKRAVHEKIINLVHQQRSSKSMEKEVEPEADSLMAKEIKETHGSKRKAKTFKDE 592
V+V++++ + + N ++ +K + +E + L AK E K+K + FK++
Sbjct: 388 VNVVRRECEIKLEAANFDEKKEINKRKQLILEGKDPDLEAKRKAELAKIKQKNRRFKEK 446
>UNIPROTKB|P25888 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
Genevestigator:P25888 Uniprot:P25888
Length = 454
Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
Identities = 128/369 (34%), Positives = 203/369 (55%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+SL LSP++ RA+ +GY+ PTPIQ++ +P +L G D++A A+TG+GKTA F +P+LQ
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 85 LNQHVPQG-G---VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
L P G VRALIL+PTR+LA Q + ++ +Y ++R ++ GG S+ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
D+++ATPGRL+ L + L VE +V DEAD + MGF + ++L +L R
Sbjct: 123 RGGVDVLVATPGRLLD-LEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKR 181
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
Q LLFSAT + A+ L +P + + S + + ++ K L +MI
Sbjct: 182 QNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIG 241
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
+ + QQ L+F TKH L ++G+ + +G+ Q AR ++ F++ L
Sbjct: 242 K--GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVL 299
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLD 380
+ TD+AARG+DI L +V+N++ P P+ +VHR+ S V ++ L D
Sbjct: 300 VATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRD 359
Query: 381 LHLFLSKPI 389
+ L K I
Sbjct: 360 IEKLLKKEI 368
>UNIPROTKB|Q48AV0 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
Identities = 131/348 (37%), Positives = 200/348 (57%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F S +L + +AI Y PT IQ++++PLIL+ DV+A A+TG+GKTAAF +P+LQ+
Sbjct: 7 FSSFSLDSTLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQQ 66
Query: 85 LNQHVP-QGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L P + +RAL+L+PTR+LA Q K G++TD+ I + GG S + Q EL
Sbjct: 67 LISVQPCKPELRALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISELKVG 126
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
DI+IATPGRL+ L E +SL ++E +VFDEAD + MGF E++ +I L + +QTL
Sbjct: 127 VDILIATPGRLLD-LLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKTKQTL 185
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
LFSAT + + +K L +P +V +D K + D++ + + + K ++I
Sbjct: 186 LFSATFADDIYKMSKNILVEPKMVEIDEKNKAADDVEQLVYGVDADRKRELTSFLIGSR- 244
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+ +Q L+F TK + L ++G++ +GD Q AR+ + F+ K LI T
Sbjct: 245 -NWKQVLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEGKVRALIAT 303
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVT 371
DVAARGIDI L +VIN++ P + +VHR+ S V+
Sbjct: 304 DVAARGIDIKGLSHVINYELPYNAEDYVHRIGRTARAGNSGLAVSLVS 351
>TIGR_CMR|CPS_0042 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
Identities = 131/348 (37%), Positives = 200/348 (57%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F S +L + +AI Y PT IQ++++PLIL+ DV+A A+TG+GKTAAF +P+LQ+
Sbjct: 7 FSSFSLDSTLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQQ 66
Query: 85 LNQHVP-QGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L P + +RAL+L+PTR+LA Q K G++TD+ I + GG S + Q EL
Sbjct: 67 LISVQPCKPELRALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISELKVG 126
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
DI+IATPGRL+ L E +SL ++E +VFDEAD + MGF E++ +I L + +QTL
Sbjct: 127 VDILIATPGRLLD-LLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKTKQTL 185
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
LFSAT + + +K L +P +V +D K + D++ + + + K ++I
Sbjct: 186 LFSATFADDIYKMSKNILVEPKMVEIDEKNKAADDVEQLVYGVDADRKRELTSFLIGSR- 244
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+ +Q L+F TK + L ++G++ +GD Q AR+ + F+ K LI T
Sbjct: 245 -NWKQVLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEGKVRALIAT 303
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVT 371
DVAARGIDI L +VIN++ P + +VHR+ S V+
Sbjct: 304 DVAARGIDIKGLSHVINYELPYNAEDYVHRIGRTARAGNSGLAVSLVS 351
>UNIPROTKB|Q9Y6V7 [details] [associations]
symbol:DDX49 "Probable ATP-dependent RNA helicase DDX49"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC002985 KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ
HOVERGEN:HBG100512 EMBL:AK223294 EMBL:BC002674 IPI:IPI00003739
RefSeq:NP_061943.2 UniGene:Hs.143187 ProteinModelPortal:Q9Y6V7
SMR:Q9Y6V7 IntAct:Q9Y6V7 STRING:Q9Y6V7 PhosphoSite:Q9Y6V7
DMDM:74753527 PaxDb:Q9Y6V7 PRIDE:Q9Y6V7 DNASU:54555
Ensembl:ENST00000247003 GeneID:54555 KEGG:hsa:54555 UCSC:uc002nkq.2
CTD:54555 GeneCards:GC19P019030 HGNC:HGNC:18684 neXtProt:NX_Q9Y6V7
PharmGKB:PA134956171 InParanoid:Q9Y6V7 OrthoDB:EOG4C87SC
PhylomeDB:Q9Y6V7 GenomeRNAi:54555 NextBio:57032 ArrayExpress:Q9Y6V7
Bgee:Q9Y6V7 CleanEx:HS_DDX49 Genevestigator:Q9Y6V7
GermOnline:ENSG00000105671 Uniprot:Q9Y6V7
Length = 483
Score = 526 (190.2 bits), Expect = 6.9e-55, Sum P(2) = 6.9e-55
Identities = 133/384 (34%), Positives = 198/384 (51%)
Query: 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQ 83
GF L LS + ++ G K PTP+Q +P IL G D + A+TGSGKTAAF++P+LQ
Sbjct: 3 GFAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQ 62
Query: 84 RLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
+L++ P G + L+L+PTR+LA Q + + LG+ L+ ++VGG M +Q EL++
Sbjct: 63 KLSED-PYG-IFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRK 120
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG---FAEQLHKILGQLSENR 200
P ++IATPGRL HL S+K + ++V DEAD L G F L IL + R
Sbjct: 121 PHVVIATPGRLADHLRSSNTFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARR 180
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSATL L E P L + + ++ K A L+++I+
Sbjct: 181 QTLLFSATLTDTLRELQGLATNQPFFWEAQAPVSTVEQLDQRYLLVPEKVKDAYLVHLIQ 240
Query: 261 ----EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK 316
EH D +IF +T + L ++ R+ + M Q R +++F++
Sbjct: 241 RFQDEH--EDWSIIIFTNTCKTCQILCMMLRKFSFPTVALHSMMKQKERFAALAKFKSSI 298
Query: 317 TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMA 376
LI TDVA+RG+DIP + VIN + P PKI++HRV + VT D+
Sbjct: 299 YRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIH 358
Query: 377 YLLDLHLFLSKPIRAAPSEE-EVL 399
+ + + K + EE EVL
Sbjct: 359 LVHAIEEQIKKKLEEFSVEEAEVL 382
Score = 58 (25.5 bits), Expect = 6.9e-55, Sum P(2) = 6.9e-55
Identities = 18/77 (23%), Positives = 35/77 (45%)
Query: 494 ELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQ 553
+L A F E+ + + KQ ILE + +K ++ + +K R EK+ + +
Sbjct: 398 KLEAAHFDEKKEINKRKQLILEGKDPDLEAKR----KAELAKIKQKNRRFKEKVEETLKR 453
Query: 554 QRSSKSMEKEVEPEADS 570
Q++ ++ K P S
Sbjct: 454 QKAGRAGHKGRPPRTPS 470
Score = 46 (21.3 bits), Expect = 1.3e-53, Sum P(2) = 1.3e-53
Identities = 17/75 (22%), Positives = 34/75 (45%)
Query: 645 HWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKATKTGIY-KKWKERSHKKVYLKGASN 703
H+D+ KK ++N +++ GK E+ K + K +++KE+ + + + A
Sbjct: 403 HFDE--KK--EINKRKQLILEGKDPDLEAKRKAELAKIKQKNRRFKEKVEETLKRQKAGR 458
Query: 704 EGNAEETTSVPGGRH 718
G+ P G H
Sbjct: 459 AGHKGRPPRTPSGSH 473
Score = 39 (18.8 bits), Expect = 6.9e-53, Sum P(2) = 6.9e-53
Identities = 12/59 (20%), Positives = 30/59 (50%)
Query: 534 VDVMKKKRAVHEKIINLVHQQRSSKSMEKEVEPEADSLMAKEIKETHGSKRKAKTFKDE 592
V+V++++ + + + ++ +K + +E + L AK E K+K + FK++
Sbjct: 388 VNVVRRECEIKLEAAHFDEKKEINKRKQLILEGKDPDLEAKRKAELAKIKQKNRRFKEK 446
>UNIPROTKB|E1C187 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AADN02019007
IPI:IPI00822640 Ensembl:ENSGALT00000011297 ArrayExpress:E1C187
Uniprot:E1C187
Length = 759
Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
Identities = 131/380 (34%), Positives = 208/380 (54%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGS-GKTAAFLVPMLQ 83
F+ +NLS + +AI G+K PTPIQ+ +P+ L G D+ A A TG+ GKTAAF++P+L+
Sbjct: 182 FQDMNLSRPLLKAITALGFKQPTPIQKACIPVGLLGKDICACAATGTVGKTAAFILPVLE 241
Query: 84 RLNQHVPQGGV-RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
RL Q + R L+L PTR+L +Q TK+L +++ + L VGG +++Q L
Sbjct: 242 RLIYKPRQAPITRVLVLVPTRELGIQVHSVTKQLAQFSSVTTCLAVGGLDVKTQEAALRS 301
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
PDI+IATPGRL+ HL L SVE ++ DEAD + F EQ+ +I+ S +RQT
Sbjct: 302 GPDILIATPGRLIDHLHNCPSFHLSSVEVLILDEADRMLDEYFEEQMKEIIRLCSRHRQT 361
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR--QEEKHAALLYMIR 260
+LFSAT+ + + A L++P + ++ +T ++P L+ F +R +E A++ +
Sbjct: 362 MLFSATMTEEVKDLASVSLKNPTRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVSALL 421
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
D ++F TK +++L GL +G++ Q R + RF+ + L
Sbjct: 422 TRTFPDH-VMLFTQTKKQAHRMHILLGLMGLRVGELHGNLSQAQRLEALRRFKDEQIDIL 480
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLD 380
+ TDVAARG+DI + VIN+ P K +VHRV S V E+ L +
Sbjct: 481 VATDVAARGLDIEGVKTVINFTMPNTTKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKE 540
Query: 381 LHLFLSKPIRAAPSEEEVLL 400
+ P++A ++V+L
Sbjct: 541 IVKAAKTPVKARILPQDVIL 560
>UNIPROTKB|Q3AFI3 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
Identities = 134/415 (32%), Positives = 221/415 (53%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L L + +A+ G+++PTPIQ++ +PLIL G ++V A TG+GKTAA+L+P+LQR
Sbjct: 4 FKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQR 63
Query: 85 LNQHVPQGGVRA--LILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
+ Q G +A LI++PTR+LALQ +LG+Y +R + GG ++E Q L Q
Sbjct: 64 I-----QRGKKAQVLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIRGLRQ 118
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
++I+ TPGR++ H+ + ++ V+ DEAD + MGF + + IL L+ +QT
Sbjct: 119 GVEVIVGTPGRILDHIGR-KTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQT 177
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
LLFSATLP+ + K L V+L K P ++ ++ L + EK L+ ++
Sbjct: 178 LLFSATLPAPIKTIIKKFLGGYKTVKLVGREKTVPAIRQVYYELPETEKIEGLVSILNSE 237
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
+ Q ++F TK V+ + G +GDM Q R + F+A KT L+
Sbjct: 238 LPI--QAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVA 295
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLH 382
TDVAARG+DIP + +VIN+D P P+ ++HR+ + + + L +
Sbjct: 296 TDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYRERKLLKAIE 355
Query: 383 LFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVRE 437
++K ++ E V L+ + KI + I +TI P +++ + + E
Sbjct: 356 EAINKRLKREILPEPVDLE-EARFKKIAKKIL--DTITKGVPALYLEMAARLLEE 407
>TIGR_CMR|CHY_0229 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
Identities = 134/415 (32%), Positives = 221/415 (53%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L L + +A+ G+++PTPIQ++ +PLIL G ++V A TG+GKTAA+L+P+LQR
Sbjct: 4 FKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQR 63
Query: 85 LNQHVPQGGVRA--LILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
+ Q G +A LI++PTR+LALQ +LG+Y +R + GG ++E Q L Q
Sbjct: 64 I-----QRGKKAQVLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIRGLRQ 118
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
++I+ TPGR++ H+ + ++ V+ DEAD + MGF + + IL L+ +QT
Sbjct: 119 GVEVIVGTPGRILDHIGR-KTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQT 177
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
LLFSATLP+ + K L V+L K P ++ ++ L + EK L+ ++
Sbjct: 178 LLFSATLPAPIKTIIKKFLGGYKTVKLVGREKTVPAIRQVYYELPETEKIEGLVSILNSE 237
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
+ Q ++F TK V+ + G +GDM Q R + F+A KT L+
Sbjct: 238 LPI--QAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVA 295
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLH 382
TDVAARG+DIP + +VIN+D P P+ ++HR+ + + + L +
Sbjct: 296 TDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYRERKLLKAIE 355
Query: 383 LFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVRE 437
++K ++ E V L+ + KI + I +TI P +++ + + E
Sbjct: 356 EAINKRLKREILPEPVDLE-EARFKKIAKKIL--DTITKGVPALYLEMAARLLEE 407
>UNIPROTKB|Q0C4B9 [details] [associations]
symbol:HNE_0695 "Putative ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:YP_759424.1 ProteinModelPortal:Q0C4B9 STRING:Q0C4B9
GeneID:4287361 KEGG:hne:HNE_0695 PATRIC:32214196 OMA:LPMITIL
BioCyc:HNEP228405:GI69-738-MONOMER Uniprot:Q0C4B9
Length = 536
Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
Identities = 124/352 (35%), Positives = 195/352 (55%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L+ N+ +A+ GY +PTPIQR+ +P IL G DV +A+TG+GKTAAF++PM+QR
Sbjct: 6 FADFGLAENILKAVTESGYTIPTPIQREAIPHILMGGDVTGVAQTGTGKTAAFVLPMIQR 65
Query: 85 LNQHVPQGGV-RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L+ + + R LIL PTR+LA Q + ++ G+Y L ++LL+GG S + Q L +
Sbjct: 66 LSTGRARARMPRCLILCPTRELAAQVAENFEKYGKYLKLTMALLIGGVSFKEQETLLQRG 125
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
D++IATPGRLM + + + VE ++ DEAD + MGF + KI +L NRQTL
Sbjct: 126 VDVLIATPGRLMDQFDRGK-LLMMGVETLIIDEADRMLDMGFIPDIEKICAKLPANRQTL 184
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE-H 262
LFSAT P+ + AK +DP + + + + + L + A + R
Sbjct: 185 LFSATFPTDIQRLAKTFQKDPKKIEVTRPAQTAETISQFVVKLPTNDGKARRTALRRVIE 244
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
++ + ++F + K V+ + + G + + +GD+ Q R + RFR K L+
Sbjct: 245 ATNVKNGIVFCNRKVEVDIVAASLTKHGHDAAPIHGDLPQSVRSETLQRFRDGKLKLLVA 304
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSED 374
+DVAARG+DIP + +V N+ PPK + +VHR+ ++ VT D
Sbjct: 305 SDVAARGLDIPDVGHVFNFGPPPKDEDYVHRIGRTGRAGRTGESYTVVTPAD 356
>RGD|1311124 [details] [associations]
symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 49"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1311124 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 IPI:IPI00362462 PRIDE:E9PTF0
Ensembl:ENSRNOT00000004891 UCSC:RGD:1311124 Uniprot:E9PTF0
Length = 480
Score = 525 (189.9 bits), Expect = 3.7e-54, Sum P(2) = 3.7e-54
Identities = 128/384 (33%), Positives = 198/384 (51%)
Query: 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQ 83
GF L LS + ++ G K PTP+Q +P IL G D + A+TGSGKTAAF++P+LQ
Sbjct: 3 GFAELRLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQ 62
Query: 84 RLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
+L++ P G + L+L+PTR+LA Q + + LG+ L+ ++VGG M +Q EL++
Sbjct: 63 KLSED-PYG-IFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQALELSRK 120
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG---FAEQLHKILGQLSENR 200
P ++IATPGRL HL ++K + ++V DEAD L G F L IL + R
Sbjct: 121 PHVVIATPGRLADHLRSSNTFNMKKIRFLVLDEADRLLEQGCTDFTADLETILSAVPARR 180
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSATL L E P + L + + ++ K A L+++++
Sbjct: 181 QTLLFSATLTDTLKELQGLATNQPFFWEAQATVRTVEQLDQRYLLVPEKVKDAYLVHLVQ 240
Query: 261 --EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
+ D +IF +T + L ++ R+ + M Q R ++RF++
Sbjct: 241 TFQDQLEDCSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALARFKSSTYR 300
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYL 378
LI TDVA+RG+DIP + VIN + P PKI++HRV + VT D+ L
Sbjct: 301 ILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLL 360
Query: 379 LDLHLFLSKPIRAAPSEEEVLLDM 402
+ + + + EE +L +
Sbjct: 361 HAIEEEIKQQLAELAVEEAQVLQI 384
Score = 52 (23.4 bits), Expect = 3.7e-54, Sum P(2) = 3.7e-54
Identities = 16/73 (21%), Positives = 33/73 (45%)
Query: 494 ELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQ 553
+L A F E+ + + KQ ILE + +K ++ + ++ R EK+ + Q
Sbjct: 398 KLEASHFDEKKEINKRKQMILEGKDPDLEAKR----KAELAKIKQQNRRFKEKVEQTLRQ 453
Query: 554 QRSSKSMEKEVEP 566
Q++ + + P
Sbjct: 454 QKAGSTGRRSRPP 466
>MGI|MGI:2136689 [details] [associations]
symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 49"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2136689 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 HOVERGEN:HBG100512 CTD:54555
OrthoDB:EOG4C87SC EMBL:BC099554 IPI:IPI00354271
RefSeq:NP_001020093.2 UniGene:Mm.388127 UniGene:Mm.440659
ProteinModelPortal:Q4FZF3 SMR:Q4FZF3 PhosphoSite:Q4FZF3
PRIDE:Q4FZF3 Ensembl:ENSMUST00000008004 GeneID:234374
KEGG:mmu:234374 UCSC:uc009lzu.1 InParanoid:Q4FZF3 NextBio:382139
Bgee:Q4FZF3 CleanEx:MM_DDX49 Genevestigator:Q4FZF3
GermOnline:ENSMUSG00000057788 Uniprot:Q4FZF3
Length = 480
Score = 522 (188.8 bits), Expect = 7.8e-54, Sum P(2) = 7.8e-54
Identities = 128/382 (33%), Positives = 200/382 (52%)
Query: 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQ 83
GF + LS + ++ G K PTP+Q +P IL G D + A+TGSGKTAAF++P+LQ
Sbjct: 3 GFAEIGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQ 62
Query: 84 RLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
+L++ P G + L+L+PTR+LA Q + + LG+ L+ ++VGG M +Q EL++
Sbjct: 63 KLSED-PYG-IFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRK 120
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG---FAEQLHKILGQLSENR 200
P ++IATPGRL HL ++K ++++V DEAD L G F L IL + R
Sbjct: 121 PHVVIATPGRLADHLRSSNTFNMKKIQFLVMDEADRLLEQGCTDFTTDLETILAAVPARR 180
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSATL L E +P + L + + ++ K A L+++++
Sbjct: 181 QTLLFSATLTDTLKELQGLATNEPFFWEAQATVRTVEQLDQRYLLVPEKVKDAYLVHLVQ 240
Query: 261 --EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
+ D +IF +T + L ++ R+ + M Q R +++F++
Sbjct: 241 TFQDQLEDCSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSSIYR 300
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYL 378
LI TDVA+RG+DIP + VIN + P PKI++HRV + VT D+ L
Sbjct: 301 ILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQYDIHLL 360
Query: 379 LDLHLFLSKPIRAAPSEE-EVL 399
+ + + + EE EVL
Sbjct: 361 HAIEEQIKQQLAELVVEEAEVL 382
Score = 52 (23.4 bits), Expect = 7.8e-54, Sum P(2) = 7.8e-54
Identities = 15/75 (20%), Positives = 35/75 (46%)
Query: 494 ELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQ 553
+L A F E+ + + KQ ILE + +K ++ + ++ R EK+ + +
Sbjct: 398 KLEASHFDEKKEINKRKQMILEGKDPDLEAKR----KAELAKIKQQNRRFKEKVGQTLRR 453
Query: 554 QRSSKSMEKEVEPEA 568
Q++ ++ + P +
Sbjct: 454 QKAGSTVRRSRPPRS 468
>UNIPROTKB|A0R8U6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:412694 "Bacillus thuringiensis str. Al Hakam" [GO:0003723
"RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 EMBL:CP000485 RefSeq:YP_893146.1
ProteinModelPortal:A0R8U6 STRING:A0R8U6
EnsemblBacteria:EBBACT00000069056 GeneID:4546566
GenomeReviews:CP000485_GR KEGG:btl:BALH_0232 PATRIC:18992499
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
BioCyc:BTHU412694:GH1W-393-MONOMER Uniprot:A0R8U6
Length = 528
Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
Identities = 121/399 (30%), Positives = 218/399 (54%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L LS ++ ++++ G++ TPIQ +T+P L G D++ A+TG+GKTAAF +P+L +
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
++ H + V+ ++++PTR+LA+Q + ++G++ +RI + GG + Q L ++P
Sbjct: 64 VDTH--KESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHP 121
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
II+ TPGR++ H++ + + L++VE VV DEAD + MGF E + IL + E QTLL
Sbjct: 122 HIIVGTPGRILDHINR-KTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 180
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P + A+ + +P +++ P+++ + +++++K L ++ I
Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLL--DIQ 238
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
S + ++F TK V+ L+ G +GD+ Q R + +F+ L+ TD
Sbjct: 239 SPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATD 298
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHLF 384
VAARG+DI + +V N+D P P+ +VHR+ FVT + L ++
Sbjct: 299 VAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERT 358
Query: 385 LSKPIRA--APSEEEVLLDMDGVMS-KIDQAIANGETIY 420
+ + AP+ +E L +++ K+ I N Y
Sbjct: 359 TKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAY 397
>UNIPROTKB|Q63GX5 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:288681 "Bacillus cereus E33L" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0043590
"bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:CP000001 RefSeq:YP_081836.1
ProteinModelPortal:Q63GX5 STRING:Q63GX5
EnsemblBacteria:EBBACT00000041470 GeneID:3022962
GenomeReviews:CP000001_GR KEGG:bcz:BCZK0221 PATRIC:18883656
BioCyc:BCER288681:GHG7-745-MONOMER Uniprot:Q63GX5
Length = 528
Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
Identities = 121/399 (30%), Positives = 218/399 (54%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L LS ++ ++++ G++ TPIQ +T+P L G D++ A+TG+GKTAAF +P+L +
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
++ H + V+ ++++PTR+LA+Q + ++G++ +RI + GG + Q L ++P
Sbjct: 64 VDTH--KESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHP 121
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
II+ TPGR++ H++ + + L++VE VV DEAD + MGF E + IL + E QTLL
Sbjct: 122 HIIVGTPGRILDHINR-KTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 180
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P + A+ + +P +++ P+++ + +++++K L ++ I
Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLL--DIQ 238
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
S + ++F TK V+ L+ G +GD+ Q R + +F+ L+ TD
Sbjct: 239 SPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATD 298
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHLF 384
VAARG+DI + +V N+D P P+ +VHR+ FVT + L ++
Sbjct: 299 VAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERT 358
Query: 385 LSKPIRA--APSEEEVLLDMDGVMS-KIDQAIANGETIY 420
+ + AP+ +E L +++ K+ I N Y
Sbjct: 359 TKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAY 397
>UNIPROTKB|Q6HPE6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:281309 "Bacillus thuringiensis serovar konkukian str.
97-27" [GO:0003723 "RNA binding" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017355 RefSeq:YP_034574.1
ProteinModelPortal:Q6HPE6 EnsemblBacteria:EBBACT00000074889
GeneID:2854643 GenomeReviews:AE017355_GR KEGG:btk:BT9727_0219
PATRIC:18980863 BioCyc:BTHU281309:GJID-254-MONOMER Uniprot:Q6HPE6
Length = 528
Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
Identities = 121/399 (30%), Positives = 218/399 (54%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L LS ++ ++++ G++ TPIQ +T+P L G D++ A+TG+GKTAAF +P+L +
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
++ H + V+ ++++PTR+LA+Q + ++G++ +RI + GG + Q L ++P
Sbjct: 64 VDTH--KESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHP 121
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
II+ TPGR++ H++ + + L++VE VV DEAD + MGF E + IL + E QTLL
Sbjct: 122 HIIVGTPGRILDHINR-KTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 180
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P + A+ + +P +++ P+++ + +++++K L ++ I
Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLL--DIQ 238
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
S + ++F TK V+ L+ G +GD+ Q R + +F+ L+ TD
Sbjct: 239 SPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATD 298
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHLF 384
VAARG+DI + +V N+D P P+ +VHR+ FVT + L ++
Sbjct: 299 VAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERT 358
Query: 385 LSKPIRA--APSEEEVLLDMDGVMS-KIDQAIANGETIY 420
+ + AP+ +E L +++ K+ I N Y
Sbjct: 359 TKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAY 397
>UNIPROTKB|Q73EU1 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:222523 "Bacillus cereus ATCC 10987" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017194
RefSeq:NP_976595.1 ProteinModelPortal:Q73EU1 STRING:Q73EU1
DNASU:2752637 EnsemblBacteria:EBBACT00000029857 GeneID:2752637
GenomeReviews:AE017194_GR KEGG:bca:BCE_0267 PATRIC:18849372
Uniprot:Q73EU1
Length = 525
Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
Identities = 121/399 (30%), Positives = 218/399 (54%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L LS ++ ++++ G++ TPIQ +T+P L G D++ A+TG+GKTAAF +P+L +
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
++ H + V+ ++++PTR+LA+Q + ++G++ +RI + GG + Q L ++P
Sbjct: 64 VDTH--KESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHP 121
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
II+ TPGR++ H++ + + L++VE VV DEAD + MGF E + IL + E QTLL
Sbjct: 122 HIIVGTPGRILDHINR-KTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 180
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P + A+ + +P +++ P+++ + +++++K L ++ I
Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLL--DIQ 238
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
S + ++F TK V+ L+ G +GD+ Q R + +F+ L+ TD
Sbjct: 239 SPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATD 298
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHLF 384
VAARG+DI + +V N+D P P+ +VHR+ FVT + L ++
Sbjct: 299 VAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERT 358
Query: 385 LSKPIRA--APSEEEVLLDMDGVMS-KIDQAIANGETIY 420
+ + AP+ +E L +++ K+ I N Y
Sbjct: 359 TKRKMDRMDAPTLDEALEGQQRLIAEKLQNTIENENLAY 397
>UNIPROTKB|Q81IT9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:226900 "Bacillus cereus ATCC 14579" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE016877 RefSeq:NP_830127.1
STRING:Q81IT9 DNASU:1202612 EnsemblBacteria:EBBACT00000032730
GeneID:1202612 GenomeReviews:AE016877_GR KEGG:bce:BC0259
PATRIC:32596146 BioCyc:BCER226900:GJEU-261-MONOMER Uniprot:Q81IT9
Length = 533
Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
Identities = 121/399 (30%), Positives = 218/399 (54%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L LS ++ ++++ G++ TPIQ +T+P L G D++ A+TG+GKTAAF +P+L +
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
++ H + V+ ++++PTR+LA+Q + ++G++ +RI + GG + Q L ++P
Sbjct: 64 VDTH--KESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHP 121
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
II+ TPGR++ H++ + + L++VE VV DEAD + MGF E + IL + E QTLL
Sbjct: 122 HIIVGTPGRILDHINR-KTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 180
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P + A+ + +P +++ P+++ + +++++K L ++ I
Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLL--DIQ 238
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
S + ++F TK V+ L+ G +GD+ Q R + +F+ L+ TD
Sbjct: 239 SPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATD 298
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHLF 384
VAARG+DI + +V N+D P P+ +VHR+ FVT + L ++
Sbjct: 299 VAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERT 358
Query: 385 LSKPIRA--APSEEEVLLDMDGVMS-KIDQAIANGETIY 420
+ + AP+ +E L +++ K+ I N Y
Sbjct: 359 TKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAY 397
>UNIPROTKB|Q81VG0 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:1392 "Bacillus anthracis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
Identities = 121/399 (30%), Positives = 218/399 (54%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L LS ++ ++++ G++ TPIQ +T+P L G D++ A+TG+GKTAAF +P+L +
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
++ H + V+ ++++PTR+LA+Q + ++G++ +RI + GG + Q L ++P
Sbjct: 64 VDTH--KESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHP 121
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
II+ TPGR++ H++ + + L++VE VV DEAD + MGF E + IL + E QTLL
Sbjct: 122 HIIVGTPGRILDHINR-KTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 180
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P + A+ + +P +++ P+++ + +++++K L ++ I
Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLL--DIQ 238
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
S + ++F TK V+ L+ G +GD+ Q R + +F+ L+ TD
Sbjct: 239 SPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATD 298
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHLF 384
VAARG+DI + +V N+D P P+ +VHR+ FVT + L ++
Sbjct: 299 VAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERT 358
Query: 385 LSKPIRA--APSEEEVLLDMDGVMS-KIDQAIANGETIY 420
+ + AP+ +E L +++ K+ I N Y
Sbjct: 359 TKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAY 397
>TIGR_CMR|BA_0247 [details] [associations]
symbol:BA_0247 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
Identities = 121/399 (30%), Positives = 218/399 (54%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L LS ++ ++++ G++ TPIQ +T+P L G D++ A+TG+GKTAAF +P+L +
Sbjct: 4 FRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDK 63
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
++ H + V+ ++++PTR+LA+Q + ++G++ +RI + GG + Q L ++P
Sbjct: 64 VDTH--KESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHP 121
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
II+ TPGR++ H++ + + L++VE VV DEAD + MGF E + IL + E QTLL
Sbjct: 122 HIIVGTPGRILDHINR-KTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLL 180
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P + A+ + +P +++ P+++ + +++++K L ++ I
Sbjct: 181 FSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQEKKKFDVLTRLL--DIQ 238
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
S + ++F TK V+ L+ G +GD+ Q R + +F+ L+ TD
Sbjct: 239 SPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVLVATD 298
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHLF 384
VAARG+DI + +V N+D P P+ +VHR+ FVT + L ++
Sbjct: 299 VAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKNIERT 358
Query: 385 LSKPIRA--APSEEEVLLDMDGVMS-KIDQAIANGETIY 420
+ + AP+ +E L +++ K+ I N Y
Sbjct: 359 TKRKMDRMDAPTLDEALEGQQRLIAEKLQSTIENENLAY 397
>UNIPROTKB|Q8EBV7 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
Identities = 129/368 (35%), Positives = 205/368 (55%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F +L+L+ + + GY+ PTPIQ + +P IL+ DV+A A+TG+GKTAAF +P+LQ
Sbjct: 3 FSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQL 62
Query: 85 L---NQ--HVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139
L NQ H + +RAL+L PTR+LALQ + + + TD+R+ + GG S+E+Q
Sbjct: 63 LMADNQSDHAAKA-IRALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQAV 121
Query: 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSEN 199
D++IATPGRL+ HL + ++L + +VFDEAD + MGF +++ +L Q+
Sbjct: 122 FNAGIDVLIATPGRLLDHLRQGA-LNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQ 180
Query: 200 RQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI 259
RQTLLFSATL ++ F+K LRDP + + + ++ + + + K + +++
Sbjct: 181 RQTLLFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQIEQRVYAIDSDRKTEFVSHLV 240
Query: 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319
R + QQ LIF TK V+ L + G+ +GD+ Q AR+ + F+
Sbjct: 241 RS--KNWQQVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQV 298
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLL 379
L+ TDVAARG+DI L VIN++ P + ++HR+ + + ED L
Sbjct: 299 LVATDVAARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLE 358
Query: 380 DLHLFLSK 387
++ L K
Sbjct: 359 EVETLLDK 366
>TIGR_CMR|SO_3388 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
Identities = 129/368 (35%), Positives = 205/368 (55%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F +L+L+ + + GY+ PTPIQ + +P IL+ DV+A A+TG+GKTAAF +P+LQ
Sbjct: 3 FSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQL 62
Query: 85 L---NQ--HVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139
L NQ H + +RAL+L PTR+LALQ + + + TD+R+ + GG S+E+Q
Sbjct: 63 LMADNQSDHAAKA-IRALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQAV 121
Query: 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSEN 199
D++IATPGRL+ HL + ++L + +VFDEAD + MGF +++ +L Q+
Sbjct: 122 FNAGIDVLIATPGRLLDHLRQGA-LNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQ 180
Query: 200 RQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI 259
RQTLLFSATL ++ F+K LRDP + + + ++ + + + K + +++
Sbjct: 181 RQTLLFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQIEQRVYAIDSDRKTEFVSHLV 240
Query: 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319
R + QQ LIF TK V+ L + G+ +GD+ Q AR+ + F+
Sbjct: 241 RS--KNWQQVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQV 298
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLL 379
L+ TDVAARG+DI L VIN++ P + ++HR+ + + ED L
Sbjct: 299 LVATDVAARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLE 358
Query: 380 DLHLFLSK 387
++ L K
Sbjct: 359 EVETLLDK 366
>TIGR_CMR|SO_3783 [details] [associations]
symbol:SO_3783 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_719320.1 ProteinModelPortal:Q8EAV8 GeneID:1171430
KEGG:son:SO_3783 PATRIC:23527244 ProtClustDB:CLSK2393932
Uniprot:Q8EAV8
Length = 535
Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
Identities = 132/404 (32%), Positives = 218/404 (53%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F +L LS + +A+ +GY P+PIQ + +P +L+G DV+A A+TG+GKTA F +P+L+
Sbjct: 3 FSALGLSAPLQKAVSEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLEL 62
Query: 85 LNQ-HVPQGG-VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
L + H + G RAL+L+PTR+LA Q + + G+Y LR +++ GG + Q +L
Sbjct: 63 LAKGHKAKSGQTRALVLTPTRELAAQVGESVETYGKYLPLRSAVVFGGVPINPQINKLRH 122
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
D+++ATPGRL+ L + + +E +V DEAD + MGF + KIL L RQ
Sbjct: 123 GVDVLVATPGRLLD-LVQQNAVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKRQN 181
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
L+FSAT + E AK + P + + + +K + + +K A L+ +I++
Sbjct: 182 LMFSATFSDEIRELAKGLVNHPVEISVTPRNAAATTVKQWICPVDKTQKSALLIQLIKQE 241
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
+ QQ L+F TKH L + + + +G+ Q AR ++ F++ + L+
Sbjct: 242 --NWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLVA 299
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLH 382
TD+AARG+DI L V+N+D P P+ +VHR+ S V+SE++ L D+
Sbjct: 300 TDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSSEEIKLLKDIE 359
Query: 383 LFLSK-----------PIRAAPSEEEVLLDMDGVMSKIDQAIAN 415
+++ P+ A P E L+ G +K+ +A+AN
Sbjct: 360 RLINRVLERQEVEGFSPVHALP---ETTLNPQGKDTKV-KAVAN 399
>UNIPROTKB|Q0C354 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_759839.1 ProteinModelPortal:Q0C354 STRING:Q0C354
GeneID:4290097 KEGG:hne:HNE_1118 PATRIC:32215041 OMA:KHGSEKL
BioCyc:HNEP228405:GI69-1155-MONOMER Uniprot:Q0C354
Length = 464
Score = 533 (192.7 bits), Expect = 2.0e-53, Sum P(2) = 2.0e-53
Identities = 118/353 (33%), Positives = 190/353 (53%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+SL L+ + ++ + GY PTPIQ + +PL++ G D+V +A+TG+GKT AF P+L R
Sbjct: 9 FQSLGLTGRILTSLTKAGYTAPTPIQEQAIPLVIQGRDIVGLAQTGTGKTLAFAAPILDR 68
Query: 85 LNQHV---PQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L+++ P G R L+L+PTR+LA Q G +LR+ ++ GG + Q +L
Sbjct: 69 LSRNASPAPVRGTRVLVLAPTRELAGQIATSFGTYGAGLNLRVVMVCGGAKIGGQIRQLE 128
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ I++ATPGRL+ L E +SL VE ++ DEAD + +GF L I + RQ
Sbjct: 129 RGAHILVATPGRLID-LMEQRAVSLDKVETLILDEADQMLDLGFIHALRAIAKNVPSKRQ 187
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
TL FSAT+P A+ A LR+P V + + ++ + Q EK + L+ IR+
Sbjct: 188 TLFFSATMPKAVESLAATFLRNPAEVSVAPPATTAGRIEQRVCFVEQPEKASLLIEKIRD 247
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ ++F TKH + + + ++ +G+ Q R+ + F+A + L+
Sbjct: 248 --PELRSAIVFTRTKHGADGVVKRLAKADIDSVAIHGNKSQSQREKALEAFKAGRVPILV 305
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSED 374
TD+AARGI + L +VIN+D P P+ FVHR+ SF + ++
Sbjct: 306 ATDIAARGIHVDALTHVINYDLPDVPEQFVHRIGRTARAGNSGVAISFCSRDE 358
Score = 37 (18.1 bits), Expect = 2.0e-53, Sum P(2) = 2.0e-53
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 476 DLPREGLHPMFKNVLEGGELMALAFSER 503
D+P + +H + + G +A++F R
Sbjct: 329 DVPEQFVHRIGRTARAGNSGVAISFCSR 356
>MGI|MGI:1915005 [details] [associations]
symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 47"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006364 "rRNA processing" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915005
GO:GO:0005524 GO:GO:0006915 GO:GO:0005730 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802
GeneTree:ENSGT00670000098028 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF OrthoDB:EOG4TXBRS ChiTaRS:DDX47 EMBL:AK010310
EMBL:AK076982 IPI:IPI00187240 RefSeq:NP_080636.2 UniGene:Mm.166524
ProteinModelPortal:Q9CWX9 SMR:Q9CWX9 IntAct:Q9CWX9
PhosphoSite:Q9CWX9 PaxDb:Q9CWX9 PRIDE:Q9CWX9
Ensembl:ENSMUST00000032326 GeneID:67755 KEGG:mmu:67755
InParanoid:Q9CWX9 NextBio:325481 Bgee:Q9CWX9 CleanEx:MM_DDX47
Genevestigator:Q9CWX9 GermOnline:ENSMUSG00000030204 Uniprot:Q9CWX9
Length = 455
Score = 552 (199.4 bits), Expect = 2.4e-53, P = 2.4e-53
Identities = 131/380 (34%), Positives = 215/380 (56%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L ++ + A + G+ PT IQ + +PL L G D++ +A TGSGKT AF +P+L
Sbjct: 26 FKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNA 85
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGG-DSMESQFEELAQN 143
L + PQ + AL+L+PTR+LA Q + + LG ++ +++VGG DSM SQ LA+
Sbjct: 86 LLE-TPQR-LFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSM-SQSLALAKK 142
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
P I+IATPGRL+ HL + +L++++Y+V DEAD + M F ++ KIL + +R+T
Sbjct: 143 PHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTF 202
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLA--FFTLRQEEKHAALLYMIRE 261
LFSAT+ + + +A L++P V+ V +K KL + + + K L+Y++ E
Sbjct: 203 LFSATMTKKVQKLQRAALKNP--VKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNE 260
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ +IF ST ++ + +L R G +G M Q R +++F+A+ L+
Sbjct: 261 --LAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILL 318
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDL 381
TDVA+RG+DIP +D V+N+D P K ++HRV +FVT D+ +
Sbjct: 319 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
Query: 382 HLFLSKPIRAAPSE-EEVLL 400
+ K + P++ EEV++
Sbjct: 379 EHLIGKKLPVFPTQDEEVMM 398
>UNIPROTKB|G3V727 [details] [associations]
symbol:Ddx47 "Protein Ddx47" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:CH473964
GeneTree:ENSGT00670000098028 CTD:51202 KO:K14777 OMA:IFIPSKF
RefSeq:NP_001015005.2 UniGene:Rn.73790 Ensembl:ENSRNOT00000011096
GeneID:297685 KEGG:rno:297685 RGD:1310437 NextBio:642541
Uniprot:G3V727
Length = 455
Score = 552 (199.4 bits), Expect = 2.4e-53, P = 2.4e-53
Identities = 131/380 (34%), Positives = 215/380 (56%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L ++ + A + G+ PT IQ + +PL L G D++ +A TGSGKT AF +P+L
Sbjct: 26 FKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNA 85
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGG-DSMESQFEELAQN 143
L + PQ + AL+L+PTR+LA Q + + LG ++ +++VGG DSM SQ LA+
Sbjct: 86 LLE-TPQR-LFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSM-SQSLALAKK 142
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
P I+IATPGRL+ HL + +L++++Y+V DEAD + M F ++ KIL + +R+T
Sbjct: 143 PHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTF 202
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLA--FFTLRQEEKHAALLYMIRE 261
LFSAT+ + + +A L++P V+ V +K KL + + + K L+Y++ E
Sbjct: 203 LFSATMTKKVQKLQRAALKNP--VKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNE 260
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ +IF ST ++ + +L R G +G M Q R +++F+A+ L+
Sbjct: 261 --LAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILL 318
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDL 381
TDVA+RG+DIP +D V+N+D P K ++HRV +FVT D+ +
Sbjct: 319 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
Query: 382 HLFLSKPIRAAPSE-EEVLL 400
+ K + P++ EEV++
Sbjct: 379 EHLIGKKLPVFPTQDEEVMM 398
>UNIPROTKB|P96614 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003723 "RNA binding" evidence=IDA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA] [GO:0009409
"response to cold" evidence=IGI] [GO:0010501 "RNA secondary
structure unwinding" evidence=IDA] [GO:0043590 "bacterial nucleoid"
evidence=IDA] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0009409
GO:GO:0003723 EMBL:AL009126 GenomeReviews:AL009126_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 HSSP:Q58083 ProtClustDB:CLSK886742
EMBL:AB001488 PIR:D69772 RefSeq:NP_388339.1
ProteinModelPortal:P96614 SMR:P96614 IntAct:P96614 DNASU:938170
EnsemblBacteria:EBBACT00000000739 GeneID:938170 KEGG:bsu:BSU04580
PATRIC:18972500 GenoList:BSU04580 BioCyc:BSUB:BSU04580-MONOMER
GO:GO:0010501 Uniprot:P96614
Length = 494
Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
Identities = 114/354 (32%), Positives = 199/354 (56%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ NLS ++ +AI R G++ TPIQ +T+PL LS DV+ A+TG+GKTAAF +P++++
Sbjct: 5 FQDFNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVEK 64
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
+N P ++A++++PTR+LA+Q + ++G+ ++ + GG + Q L +NP
Sbjct: 65 INPESPN--IQAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKNP 122
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
+II+ TPGRL+ H++ + L +V VV DEAD + MGF + + IL + QTLL
Sbjct: 123 NIIVGTPGRLLDHINR-RTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTLL 181
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P+ + A+ + +P V++ +++ + +++ +K L ++ I
Sbjct: 182 FSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLL--DIQ 239
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
S + ++F TK V+ L G +GD+ Q R + + +F+ L+ TD
Sbjct: 240 SPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATD 299
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYL 378
VAARG+DI + +V N+D P P+ +VHR+ +F+T + + L
Sbjct: 300 VAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSML 353
>UNIPROTKB|Q65N62 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:279010 "Bacillus licheniformis DSM 13 = ATCC 14580"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0043590 "bacterial nucleoid" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 OMA:IIDHINR HSSP:Q58083 EMBL:AE017333
EMBL:CP000002 RefSeq:YP_006711973.1 RefSeq:YP_077785.1
ProteinModelPortal:Q65N62 STRING:Q65N62 DNASU:3098967
EnsemblBacteria:EBBACT00000055567 EnsemblBacteria:EBBACT00000059427
GeneID:3030407 GeneID:3098967 GenomeReviews:AE017333_GR
GenomeReviews:CP000002_GR KEGG:bld:BLi00546 KEGG:bli:BL02197
PATRIC:18946609 ProtClustDB:CLSK886742
BioCyc:BLIC279010:GJ2P-538-MONOMER Uniprot:Q65N62
Length = 487
Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
Identities = 120/377 (31%), Positives = 206/377 (54%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ LS ++ +AIKR G++ TPIQ +T+PL L+ DV+ A+TG+GKTAAF +P++++
Sbjct: 5 FQDFQLSSDLTKAIKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIPLVEK 64
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
+N P ++A++++PTR+LA+Q + ++G+ R+ + GG + Q L +NP
Sbjct: 65 INPESPN--IQAIVIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQIRALKKNP 122
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
II+ TPGRL+ H++ M L++V VV DEAD + MGF E + IL + QTLL
Sbjct: 123 HIIVGTPGRLLDHINR-RTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPAEHQTLL 181
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P+ + A+ + +P V++ +++ + + + +K L ++ I
Sbjct: 182 FSATMPAPIKRIAERFMTNPEHVKVKAKEMTVSNIQQFYLEVHERKKFDTLTRLL--DIQ 239
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
S + ++F TK V+ L G +GD+ Q R + + +F+ L+ TD
Sbjct: 240 SPELAIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLVATD 299
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVT--SEDMAYLLDLH 382
VAARG+DI + +V N+D P P+ +VHR+ +F+T +DM ++
Sbjct: 300 VAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKDMLRAIEQT 359
Query: 383 LFLSKPIRAAPSEEEVL 399
AP+ +E +
Sbjct: 360 TKRKMDRMKAPTLDEAI 376
>TIGR_CMR|DET_0183 [details] [associations]
symbol:DET_0183 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000027 GenomeReviews:CP000027_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_180931.1 ProteinModelPortal:Q3ZA18
STRING:Q3ZA18 GeneID:3230538 KEGG:det:DET0183 PATRIC:21607443
OMA:NFAPAVM ProtClustDB:CLSK837629
BioCyc:DETH243164:GJNF-183-MONOMER Uniprot:Q3ZA18
Length = 560
Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
Identities = 150/503 (29%), Positives = 247/503 (49%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FES N +P V ++ GY+ PTPIQ + +P IL G DV+ +A+TG+GKTAA+ +P++Q+
Sbjct: 3 FESFNFAPAVMAGVRACGYQEPTPIQAQAIPPILEGHDVIGLAQTGTGKTAAYALPVIQK 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
+ P+G VR L+L+PTR+LA Q + + LG+ +R + GG +M+ Q L
Sbjct: 63 MLS-TPRGRVRTLVLAPTRELACQIAESFRSLGQRARIRECSIYGGVNMDQQIRRLRSGV 121
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
D+++A PGRL+ H+ + + VE ++ DEAD +F MGF + IL L + QTLL
Sbjct: 122 DVVVACPGRLLDHIWR-GTIDICGVETLIIDEADRMFDMGFQPDIQSILKCLVQPHQTLL 180
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P + + +P +++ S + + + ++ +K L+ +++ +
Sbjct: 181 FSATMPPEVRKLTLETQTNPVTIQIGTQAPAS-SVSHSVYPVKNHQKTPLLIEILKT--T 237
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
+ LIF TK+ E L G + G++ Q+ R + FR L+ TD
Sbjct: 238 ETKSVLIFARTKYGAENLADEISRAGFTTASLQGNLSQNRRHAVMEGFRRGNFKILVATD 297
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHLF 384
+AARG+DI + +VIN+D P P+ + HR+ S VT D + D+
Sbjct: 298 IAARGLDIDHISHVINYDMPDTPEDYTHRIGRTGRFDRTGQALSLVTGRDGDMVRDIQKL 357
Query: 385 LSKPIRAAPSEEEVLLD-MDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSA 443
++ PI + + +D D ++ D N G P+ E+ +
Sbjct: 358 INSPI------QRLRVDGFDYATTRNDGQ--NHSQRRGFAPRRGYSAEGYNRSEMPAAET 409
Query: 444 DLNSLQRTCTNA-FRLYSKT----KPLPSKESIRR-GKDLPREGLHPMFKNVLEGGELMA 497
NSL + R +S+ +P S RR G PR G P F++ + +A
Sbjct: 410 SPNSLTAEMPSGNVRPFSQAVRSGRPADSAPRFRREGYSAPRFGGRPSFEDAPMAAKPVA 469
Query: 498 LAFSERLKAFRPKQTILEAEGEA 520
F+ R AFR K+ +A +A
Sbjct: 470 -RFNAR-PAFR-KEDDAQAAAKA 489
>UNIPROTKB|P0A9P6 [details] [associations]
symbol:deaD "DeaD, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030684 "preribosome" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000027 "ribosomal large
subunit assembly" evidence=IMP] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0006401 "RNA catabolic
process" evidence=IGI] [GO:0003724 "RNA helicase activity"
evidence=IDA] [GO:0070417 "cellular response to cold"
evidence=IEP;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR021046 Pfam:PF00270 Pfam:PF00271 Pfam:PF12343
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U18997 GO:GO:0003723 GO:GO:0006401
GO:GO:0070417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 EMBL:M63288 EMBL:U03750 PIR:F65106 RefSeq:NP_417631.2
RefSeq:YP_491349.1 ProteinModelPortal:P0A9P6 SMR:P0A9P6
DIP:DIP-35752N IntAct:P0A9P6 MINT:MINT-1219396 SWISS-2DPAGE:P0A9P6
PaxDb:P0A9P6 PRIDE:P0A9P6 EnsemblBacteria:EBESCT00000000679
EnsemblBacteria:EBESCT00000014242 GeneID:12933435 GeneID:947674
KEGG:ecj:Y75_p3084 KEGG:eco:b3162 PATRIC:32121742 EchoBASE:EB0211
EcoGene:EG10215 OMA:ILFMTPR ProtClustDB:PRK11634
BioCyc:EcoCyc:EG10215-MONOMER BioCyc:ECOL316407:JW5531-MONOMER
Genevestigator:P0A9P6 GO:GO:0030684 Uniprot:P0A9P6
Length = 629
Score = 529 (191.3 bits), Expect = 3.3e-53, Sum P(2) = 3.3e-53
Identities = 125/376 (33%), Positives = 200/376 (53%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L L + A+ GY+ P+PIQ + +P +L+G DV+ MA+TGSGKTAAF +P+LQ
Sbjct: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 67
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEELAQN 143
L+ + + L+L+PTR+LA+Q + + ++ + + L GG + Q L Q
Sbjct: 68 LDPELKAPQI--LVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
P I++ TPGRL+ HL + L + +V DEAD + MGF E + I+ Q+ E QT
Sbjct: 126 PQIVVGTPGRLLDHLKR-GTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTA 184
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
LFSAT+P A+ + +++P VR+ PD+ +++T+ K+ AL+ + E
Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL-EAE 243
Query: 264 SSDQQTLIFVSTKHH-VEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
D +IFV TK+ +E L R G + GDM+Q R+ + R + + LI
Sbjct: 244 DFDA-AIIFVRTKNATLEVAEALERN-GYNSAALNGDMNQALREQTLERLKDGRLDILIA 301
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLH 382
TDVAARG+D+ + V+N+D P + +VHR+ FV + + L ++
Sbjct: 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE 361
Query: 383 --LFLSKPIRAAPSEE 396
+ L+ P P+ E
Sbjct: 362 RTMKLTIPEVELPNAE 377
Score = 39 (18.8 bits), Expect = 3.3e-53, Sum P(2) = 3.3e-53
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 508 RPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKR 541
RPK+ + + R ++ +GP D +++R
Sbjct: 447 RPKREFRDRDDRGPRDRNDRGPRGDREDRPRRER 480
>FB|FBgn0032919 [details] [associations]
symbol:CG9253 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
EMBL:AY121677 ProteinModelPortal:Q8MRB7 SMR:Q8MRB7 STRING:Q8MRB7
PaxDb:Q8MRB7 PRIDE:Q8MRB7 FlyBase:FBgn0032919 InParanoid:Q8MRB7
OrthoDB:EOG4V41Q7 ArrayExpress:Q8MRB7 Bgee:Q8MRB7 Uniprot:Q8MRB7
Length = 507
Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
Identities = 129/378 (34%), Positives = 213/378 (56%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
++ L L+ + +A +K P+ IQR+ +P+ L G DV+ +A TGSGKT AF +P+L
Sbjct: 63 WKDLGLNEALCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILHA 122
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L ++ PQ AL+L+PTR+LA Q + + LG ++ ++VGG M +Q +LA+ P
Sbjct: 123 LLEN-PQRYF-ALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKP 180
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
IIIATPGRL+ HL ++ +LK+++Y+V DEAD + M F +L KIL L R+T L
Sbjct: 181 HIIIATPGRLVDHLENMKGFNLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFL 240
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISP--DLKLAFFTLRQEEKHAALLYMIREH 262
FSAT+ + + +A L+DP V+++V K L+ ++ + + K L++++ E
Sbjct: 241 FSATMTKKVKKLQRASLKDP--VKVEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNE- 297
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
+ +IF ST ++ ++ R GL +G M Q+ R +++F+A+ LI
Sbjct: 298 -LAGNSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILIS 356
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLH 382
TDVA+RG+DIP +D V+N+D P K ++HRV + V+ D+ +
Sbjct: 357 TDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQRIE 416
Query: 383 LFLSKPIRAAPSEEEVLL 400
L K + EE+ ++
Sbjct: 417 HLLGKQLTLYKCEEDEVM 434
>UNIPROTKB|Q29S22 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=ISS] [GO:0006915 "apoptotic
process" evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 EMBL:BC113207
IPI:IPI00688068 RefSeq:NP_001039850.1 UniGene:Bt.23258
ProteinModelPortal:Q29S22 SMR:Q29S22 PRIDE:Q29S22
Ensembl:ENSBTAT00000003058 GeneID:534721 KEGG:bta:534721 CTD:51202
HOVERGEN:HBG100512 InParanoid:Q29S22 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4TXBRS NextBio:20876515 Uniprot:Q29S22
Length = 457
Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
Identities = 130/380 (34%), Positives = 215/380 (56%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L ++ + A + G+ PT IQ + +PL L G D++ +A TGSGKT AF +P+L
Sbjct: 28 FKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNA 87
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGG-DSMESQFEELAQN 143
L + PQ + AL+L+PTR+LA Q + + LG ++ +++VGG DSM SQ LA+
Sbjct: 88 LLE-TPQR-LFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSM-SQSLALAKK 144
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
P I+IATPGRL+ HL + +L++++Y+V DEAD + M F ++ KIL + +R+T
Sbjct: 145 PHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTF 204
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLA--FFTLRQEEKHAALLYMIRE 261
LFSAT+ + + +A L++P V+ V +K KL + + + K L+Y++ E
Sbjct: 205 LFSATMTKKVQKLQRAALKNP--VKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNE 262
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ +IF ST ++ + +L R G +G M Q R +++F+A+ L+
Sbjct: 263 --LAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILL 320
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDL 381
TDVA+RG+DIP +D V+N+D P K ++HRV +FVT D+ +
Sbjct: 321 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 380
Query: 382 HLFLSKPIRAAPSEE-EVLL 400
+ K + P+++ EV++
Sbjct: 381 EHLIGKKLPVFPTQDDEVMM 400
>UNIPROTKB|Q9H0S4 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006915 "apoptotic process" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=IMP] [GO:0006364 "rRNA
processing" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003676 GO:GO:0003723
EMBL:CH471094 UniGene:Hs.719938 GermOnline:ENSG00000178878
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF EMBL:AF078843 EMBL:AL136666 EMBL:AK054574 EMBL:AK127712
EMBL:AC007215 EMBL:BC009379 EMBL:BC068009 IPI:IPI00023972
IPI:IPI00397372 RefSeq:NP_057439.2 RefSeq:NP_957518.1 PDB:3BER
PDBsum:3BER ProteinModelPortal:Q9H0S4 SMR:Q9H0S4 IntAct:Q9H0S4
MINT:MINT-3056694 STRING:Q9H0S4 PhosphoSite:Q9H0S4 DMDM:52782792
SWISS-2DPAGE:Q9H0S4 PaxDb:Q9H0S4 PRIDE:Q9H0S4 DNASU:51202
Ensembl:ENST00000352940 Ensembl:ENST00000358007 GeneID:51202
KEGG:hsa:51202 UCSC:uc001rav.3 GeneCards:GC12P012966
HGNC:HGNC:18682 HPA:HPA014855 neXtProt:NX_Q9H0S4
PharmGKB:PA134918403 InParanoid:Q9H0S4 PhylomeDB:Q9H0S4
ChiTaRS:DDX47 EvolutionaryTrace:Q9H0S4 GenomeRNAi:51202
NextBio:54238 ArrayExpress:Q9H0S4 Bgee:Q9H0S4 CleanEx:HS_DDX47
Genevestigator:Q9H0S4 Uniprot:Q9H0S4
Length = 455
Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
Identities = 131/380 (34%), Positives = 215/380 (56%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L ++ + A + G+ PT IQ + +PL L G D++ +A TGSGKT AF +P+L
Sbjct: 26 FKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNA 85
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGG-DSMESQFEELAQN 143
L + PQ + AL+L+PTR+LA Q + + LG ++ +++VGG DSM SQ LA+
Sbjct: 86 LLE-TPQR-LFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSM-SQSLALAKK 142
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
P IIIATPGRL+ HL + +L++++Y+V DEAD + M F ++ KIL + +R+T
Sbjct: 143 PHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTF 202
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLA--FFTLRQEEKHAALLYMIRE 261
LFSAT+ + + +A L++P V+ V +K KL + + + K L+Y++ E
Sbjct: 203 LFSATMTKKVQKLQRAALKNP--VKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNE 260
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ +IF ST ++ + +L R G +G M Q R +++F+A+ L+
Sbjct: 261 --LAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILL 318
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDL 381
TDVA+RG+DIP +D V+N+D P K ++HRV +FVT D+ +
Sbjct: 319 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 378
Query: 382 HLFLSKPIRAAPSEE-EVLL 400
+ K + P+++ EV++
Sbjct: 379 EHLIGKKLPGFPTQDDEVMM 398
>DICTYBASE|DDB_G0270396 [details] [associations]
symbol:ddx49 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0270396 GO:GO:0005524 EMBL:AAFI02000005
GenomeReviews:CM000150_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:FRNLCAI
RefSeq:XP_646762.1 HSSP:P60842 ProteinModelPortal:Q55BR9
PRIDE:Q55BR9 EnsemblProtists:DDB0234206 GeneID:8617735
KEGG:ddi:DDB_G0270396 ProtClustDB:CLSZ2846935 Uniprot:Q55BR9
Length = 508
Score = 512 (185.3 bits), Expect = 5.4e-53, Sum P(2) = 5.4e-53
Identities = 125/376 (33%), Positives = 205/376 (54%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE L L+ + K+ G+K P+ IQ T+P IL G D++A A+TGSGKTA+F +P+L +
Sbjct: 6 FEELGLTTWLVANCKQLGFKAPSNIQANTIPEILKGRDIIASAKTGSGKTASFAIPILNQ 65
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L++ P G V A+IL+PTR+LA+Q + +G ++ S+++GG +Q L + P
Sbjct: 66 LSED-PYG-VFAVILTPTRELAVQIGEQFNAIGAPMNVNCSVVIGGIDNVTQALILDKRP 123
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS--ENRQT 202
II+ATPGRL HL+ ++LK +++V DEAD L G F ++ IL L E RQT
Sbjct: 124 HIIVATPGRLASHLNNGLKIALKFCKFLVLDEADRLLGEDFELEIASILEHLPPPEKRQT 183
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
LLFSAT+ L + L P + + LK + + K L+Y++++H
Sbjct: 184 LLFSATMTKNLTKLDSIALNKPFIFEDNSKYDTVDTLKQEYIYMPAPTKDCYLVYILKKH 243
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVC-YGDMDQDARKIHVSRFRARKTMFLI 321
S ++FV+ + VE + + + + PSV + +DQ +R + F++ K L+
Sbjct: 244 EGSS--AIVFVNNCYAVEAVKGMLNKLDI-PSVSLHSFLDQKSRLAALKTFKSGKVKVLV 300
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDL 381
TDVA+RG+DIP + VIN+ K ++HRV SF+T D++ + +
Sbjct: 301 ATDVASRGLDIPDVQIVINYKLSNSSKDYIHRVGRTARFGRSGRAISFITPHDVSLIKGI 360
Query: 382 HLFLSKPIRAAPSEEE 397
+ K + ++++
Sbjct: 361 EEIIKKQLELYKTDDD 376
Score = 54 (24.1 bits), Expect = 5.4e-53, Sum P(2) = 5.4e-53
Identities = 25/130 (19%), Positives = 52/130 (40%)
Query: 637 LQKQKQVYHWDKRGK-KYIKLNNGERVSASGKVVKTESGAKVKATKTG---IYKKWKERS 692
++KQ ++Y D +++K + R + + E G K K +T + K+ KE +
Sbjct: 364 IKKQLELYKTDDDEVFRHLKEASTARKIVEIHLDEIEFGVKQKERRTERNELQKQLKEVN 423
Query: 693 HKKVYLKGAS--NEGNAEETTSVPGGRHLXXXXXXXXXXXXQQRSVPNAHVCSEIKDLDQ 750
+K+ + + N N +TT + + +S+ E K +D+
Sbjct: 424 NKEKFENNNNDNNNNNKTKTTKPENKKEITKIQEQPSKSTTTTKSIEKKPTTIESKKIDK 483
Query: 751 VRKERQKKAD 760
K ++ D
Sbjct: 484 DIKRKENNFD 493
>UNIPROTKB|E2RN03 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF EMBL:AAEX03015248 Ensembl:ENSCAFT00000020996
NextBio:20853120 Uniprot:E2RN03
Length = 482
Score = 548 (198.0 bits), Expect = 6.3e-53, P = 6.3e-53
Identities = 130/380 (34%), Positives = 215/380 (56%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L ++ + A + G+ PT IQ + +PL L G D++ +A TGSGKT AF +P+L
Sbjct: 52 FKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNA 111
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGG-DSMESQFEELAQN 143
L + PQ + AL+L+PTR+LA Q + + LG ++ +++VGG DSM SQ LA+
Sbjct: 112 LLE-TPQR-LFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSM-SQSLALAKK 168
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
P I+IATPGRL+ HL + +L++++Y+V DEAD + M F ++ KIL + +R+T
Sbjct: 169 PHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTF 228
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLA--FFTLRQEEKHAALLYMIRE 261
LFSAT+ + + +A L++P V+ V +K KL + + + K L+Y++ E
Sbjct: 229 LFSATMTKKVQKLQRAALKNP--VKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNE 286
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ +IF ST ++ + +L R G +G M Q R +++F+A+ L+
Sbjct: 287 --LAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILL 344
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDL 381
TDVA+RG+DIP +D V+N+D P K ++HRV +FVT D+ +
Sbjct: 345 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRI 404
Query: 382 HLFLSKPIRAAPSEE-EVLL 400
+ K + P+++ EV++
Sbjct: 405 EHLIGKKLPVFPTQDDEVMM 424
>UNIPROTKB|Q9KS53 [details] [associations]
symbol:VC1407 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 548 (198.0 bits), Expect = 6.3e-53, P = 6.3e-53
Identities = 127/356 (35%), Positives = 195/356 (54%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L LS + + + + GY+ PT IQ + +P+IL G D++A A+TG+GKTA+F++P+L++
Sbjct: 3 FSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEK 62
Query: 85 LNQHVPQGG--VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
L Q Q VRALIL PTR+LA+Q + ++ G+ T L+ + GG ++Q + L
Sbjct: 63 LRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLID 122
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
D+++ATPGRLM + + + +E VV DEAD + MGF E ++KI+ L Q
Sbjct: 123 GVDVLVATPGRLMDLYGQ-RAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQF 181
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
LLFSATL + E AK +RDPH + + + ++ T+ ++ K A L ++I E
Sbjct: 182 LLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLINEQ 241
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
DQ LIF+ TKH L + G+ + Q R + F++ K +L+
Sbjct: 242 -QWDQ-ALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVA 299
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYL 378
T VAARGIDI L V+N+D P +VHR+ SFV+ ++ L
Sbjct: 300 TGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNL 355
>TIGR_CMR|VC_1407 [details] [associations]
symbol:VC_1407 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 548 (198.0 bits), Expect = 6.3e-53, P = 6.3e-53
Identities = 127/356 (35%), Positives = 195/356 (54%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L LS + + + + GY+ PT IQ + +P+IL G D++A A+TG+GKTA+F++P+L++
Sbjct: 3 FSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILEK 62
Query: 85 LNQHVPQGG--VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
L Q Q VRALIL PTR+LA+Q + ++ G+ T L+ + GG ++Q + L
Sbjct: 63 LRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRLID 122
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
D+++ATPGRLM + + + +E VV DEAD + MGF E ++KI+ L Q
Sbjct: 123 GVDVLVATPGRLMDLYGQ-RAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQF 181
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
LLFSATL + E AK +RDPH + + + ++ T+ ++ K A L ++I E
Sbjct: 182 LLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSALLSHLINEQ 241
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
DQ LIF+ TKH L + G+ + Q R + F++ K +L+
Sbjct: 242 -QWDQ-ALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIKYLVA 299
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYL 378
T VAARGIDI L V+N+D P +VHR+ SFV+ ++ L
Sbjct: 300 TGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFKNL 355
>ZFIN|ZDB-GENE-031030-3 [details] [associations]
symbol:ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
49" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031030-3 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K14778
HOVERGEN:HBG100512 CTD:54555 EMBL:BC047834 IPI:IPI00551936
RefSeq:NP_938179.1 UniGene:Dr.77634 ProteinModelPortal:Q7ZUT9
STRING:Q7ZUT9 GeneID:386632 KEGG:dre:386632 InParanoid:Q7ZUT9
NextBio:20813961 ArrayExpress:Q7ZUT9 Uniprot:Q7ZUT9
Length = 468
Score = 546 (197.3 bits), Expect = 1.0e-52, P = 1.0e-52
Identities = 134/383 (34%), Positives = 206/383 (53%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FESL LS + + K+ G PT +Q K +P IL G D + A+TGSGKTAAF++P+LQ+
Sbjct: 4 FESLGLSEWLIQQCKQMGISRPTAVQEKCIPAILDGRDCMGCAKTGSGKTAAFVLPVLQK 63
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L++ P G V L+L+PTR+LA Q + + LG+ L+ ++VGG M +Q EL++ P
Sbjct: 64 LSED-PYG-VFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVTQGLELSKKP 121
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG---FAEQLHKILGQLSENRQ 201
+++ATPGRL H+ + ++L +++++ DEAD L G F + L IL + RQ
Sbjct: 122 HVVVATPGRLADHIRSSDTINLNRIQFLIMDEADRLLEQGCTDFTKDLEVILSAVPAKRQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR- 260
TLLFSATL L + + P D + +L F ++ K A L+++I+
Sbjct: 182 TLLFSATLTDTLQQLQSIAMNRPFFWEHKSDVQTVEELDQRFILTPEKVKDAYLVHLIQT 241
Query: 261 ---EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKT 317
EH D +IF +T + L ++ RE + M Q R ++++F++
Sbjct: 242 FQDEH--DDWSIIIFTNTCKSCQILTMMLREFNFPTISLHSMMKQRQRFANLAKFKSNVF 299
Query: 318 MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAY 377
LI TDVAARG+DIP + VIN + P PKI++HRV + VT D+
Sbjct: 300 KILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGVSITLVTQYDIHL 359
Query: 378 LLDLHLFLSKPIRAAPSEE-EVL 399
+ + ++ P EE EVL
Sbjct: 360 INAIEEQNQTKLKEFPIEEKEVL 382
>UNIPROTKB|Q8EI96 [details] [associations]
symbol:srmB "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 525 (189.9 bits), Expect = 1.4e-52, Sum P(2) = 1.4e-52
Identities = 128/378 (33%), Positives = 203/378 (53%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE L P++ ++K G+ PT IQ++T+P L D++A A TG+GKTA+FL+P LQ
Sbjct: 3 FEDFQLDPSLLESLKAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPALQH 62
Query: 85 LNQHVPQ--GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
L + G R LIL+PTR+LA Q ++ L L I+++ GG Q E L
Sbjct: 63 LIDFPRRYSGQARVLILTPTRELASQIHRYACHLATDQGLNIAIITGGVPYAPQEEALKG 122
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
N DI++ATPGRLM +L + + S +SV+ ++ DEAD + MGF+ + I + +Q
Sbjct: 123 NIDILVATPGRLMEYLDKGK-FSAESVDILIIDEADRMLDMGFSAVVKAIALEAQGRKQN 181
Query: 203 LLFSATLP-SALAEFAKAGLRDPHLVRLDVDTKISPDLKL-AFFTLRQEEKH--AALLYM 258
+LFSATL S + FA+ L DP + +DVD K+ + L ++ H A L ++
Sbjct: 182 MLFSATLEGSGVIRFAREVLNDP--IEIDVDAPRKEKAKIHQWIHLADDKDHKFALLCHL 239
Query: 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
+++ ++ ++FV T+ V L + G+ + GDM+Q R +SRF +
Sbjct: 240 LKQE--DVKRAIVFVKTRDVVSSLEGQLLQAGIPCAFMRGDMEQKKRFQALSRFTKGEVN 297
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYL 378
L+ TDVAARGIDI + +VIN+D P ++HR+ S + DM +
Sbjct: 298 VLLATDVAARGIDIDDISHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHDMRIV 357
Query: 379 LDLHLFLSKPIRAAPSEE 396
+ ++ +P++ EE
Sbjct: 358 GKIERYIEQPLKRRIIEE 375
Score = 37 (18.1 bits), Expect = 1.4e-52, Sum P(2) = 1.4e-52
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 669 VKTESGAKVKATKTGIYKKWKERSHKK 695
V T+ AKVKA K K K+ + KK
Sbjct: 385 VPTKKKAKVKA-KEAAKKTSKKEAAKK 410
>TIGR_CMR|SO_0947 [details] [associations]
symbol:SO_0947 "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 525 (189.9 bits), Expect = 1.4e-52, Sum P(2) = 1.4e-52
Identities = 128/378 (33%), Positives = 203/378 (53%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE L P++ ++K G+ PT IQ++T+P L D++A A TG+GKTA+FL+P LQ
Sbjct: 3 FEDFQLDPSLLESLKAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPALQH 62
Query: 85 LNQHVPQ--GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
L + G R LIL+PTR+LA Q ++ L L I+++ GG Q E L
Sbjct: 63 LIDFPRRYSGQARVLILTPTRELASQIHRYACHLATDQGLNIAIITGGVPYAPQEEALKG 122
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
N DI++ATPGRLM +L + + S +SV+ ++ DEAD + MGF+ + I + +Q
Sbjct: 123 NIDILVATPGRLMEYLDKGK-FSAESVDILIIDEADRMLDMGFSAVVKAIALEAQGRKQN 181
Query: 203 LLFSATLP-SALAEFAKAGLRDPHLVRLDVDTKISPDLKL-AFFTLRQEEKH--AALLYM 258
+LFSATL S + FA+ L DP + +DVD K+ + L ++ H A L ++
Sbjct: 182 MLFSATLEGSGVIRFAREVLNDP--IEIDVDAPRKEKAKIHQWIHLADDKDHKFALLCHL 239
Query: 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
+++ ++ ++FV T+ V L + G+ + GDM+Q R +SRF +
Sbjct: 240 LKQE--DVKRAIVFVKTRDVVSSLEGQLLQAGIPCAFMRGDMEQKKRFQALSRFTKGEVN 297
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYL 378
L+ TDVAARGIDI + +VIN+D P ++HR+ S + DM +
Sbjct: 298 VLLATDVAARGIDIDDISHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEAHDMRIV 357
Query: 379 LDLHLFLSKPIRAAPSEE 396
+ ++ +P++ EE
Sbjct: 358 GKIERYIEQPLKRRIIEE 375
Score = 37 (18.1 bits), Expect = 1.4e-52, Sum P(2) = 1.4e-52
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 669 VKTESGAKVKATKTGIYKKWKERSHKK 695
V T+ AKVKA K K K+ + KK
Sbjct: 385 VPTKKKAKVKA-KEAAKKTSKKEAAKK 410
>UNIPROTKB|P21507 [details] [associations]
symbol:srmB "SrmB, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0033592 "RNA strand annealing activity"
evidence=IDA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0000027 "ribosomal large subunit assembly"
evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
EMBL:D64044 GO:GO:0030687 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0033592 EMBL:D13169
OMA:PLAMDQR HOGENOM:HOG000268807 PDB:2YJT PDBsum:2YJT EMBL:X14152
PIR:G65035 RefSeq:NP_417071.1 RefSeq:YP_490804.1
ProteinModelPortal:P21507 SMR:P21507 DIP:DIP-10920N IntAct:P21507
MINT:MINT-1225512 PRIDE:P21507 EnsemblBacteria:EBESCT00000003180
EnsemblBacteria:EBESCT00000015098 GeneID:12934372 GeneID:947055
KEGG:ecj:Y75_p2529 KEGG:eco:b2576 PATRIC:32120551 EchoBASE:EB0968
EcoGene:EG10975 KO:K05590 ProtClustDB:PRK11192
BioCyc:EcoCyc:EG10975-MONOMER BioCyc:ECOL316407:JW2560-MONOMER
Genevestigator:P21507 Uniprot:P21507
Length = 444
Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
Identities = 128/376 (34%), Positives = 204/376 (54%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L L ++ A++ KG+ PT IQ +P L G DV+ A TG+GKTAA+L+P LQ
Sbjct: 6 FSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQH 65
Query: 85 LNQ--HVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
L G R LIL+PTR+LA+Q +EL ++T L I+ + GG + + E ++
Sbjct: 66 LLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKHTHLDIATITGGVAYMNHAEVFSE 125
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
N DI++AT GRL+ ++ E E+ ++VE ++ DEAD + MGFA+ + I G+ +QT
Sbjct: 126 NQDIVVATTGRLLQYIKE-ENFDCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRKQT 184
Query: 203 LLFSATLPS-ALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ-EEKHAALLYMIR 260
LLFSATL A+ +FA+ L DP V + T+ + ++ E K A L+++++
Sbjct: 185 LLFSATLEGDAIQDFAERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLK 244
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
+ ++ ++++FV + V L RE G+ G+M Q R + R + L
Sbjct: 245 QPEAT--RSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 302
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLD 380
+ TDVAARGIDIP + +V N+D P ++HR+ S V + D L
Sbjct: 303 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 362
Query: 381 LHLFLSKPIRAAPSEE 396
+ ++ +PI+A +E
Sbjct: 363 VGRYIEEPIKARVIDE 378
>TAIR|locus:2162022 [details] [associations]
symbol:AT5G63120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000184 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AB008265 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 EMBL:AY060589
EMBL:BT000610 EMBL:AK226611 EMBL:AJ010476 IPI:IPI00532778
IPI:IPI00537266 PIR:T51349 RefSeq:NP_568964.1 RefSeq:NP_974985.1
UniGene:At.27361 ProteinModelPortal:Q8W4R3 SMR:Q8W4R3 PaxDb:Q8W4R3
PRIDE:Q8W4R3 EnsemblPlants:AT5G63120.2 GeneID:836432
KEGG:ath:AT5G63120 GeneFarm:979 TAIR:At5g63120 InParanoid:Q8W4R3
OMA:FTHANAK PhylomeDB:Q8W4R3 ProtClustDB:CLSN2690069
Genevestigator:Q8W4R3 GermOnline:AT5G63120 Uniprot:Q8W4R3
Length = 591
Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
Identities = 125/384 (32%), Positives = 205/384 (53%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ N N+ AI + G+ PTPIQ + P+ L G D++ +A TGSGKT A+L+P L
Sbjct: 167 FQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVH 226
Query: 85 LNQHVPQG---GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
++ G G LIL+PTR+LA+Q + +++ G + +R + + GG Q +L
Sbjct: 227 VSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLR 286
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ +I+IATPGRL+ L E + +LK V Y+V DEAD + MGF Q+ KI+ Q+ +RQ
Sbjct: 287 RGVEIVIATPGRLIDML-ECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 345
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRL-DVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
TLL+SAT P + A+ LRDP+ + D K + + + EK+ LL +++
Sbjct: 346 TLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLLK 405
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
+ + + LIFV TK + + R +G +GD Q R ++ F++ ++ +
Sbjct: 406 Q-LMDGSKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIM 464
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLD 380
TDVAARG+D+ + V+N+DFP + ++HR+ F+F T ++ + +
Sbjct: 465 TATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKFARE 524
Query: 381 LHLFLSKPIRAAPSEEEVLLDMDG 404
L L + + P L+ G
Sbjct: 525 LVKILQEAGQVVPPTLSALVRSSG 548
>TIGR_CMR|CPS_1418 [details] [associations]
symbol:CPS_1418 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:YP_268161.1 ProteinModelPortal:Q485V4
GeneID:3523021 KEGG:cps:CPS_1418 PATRIC:21466051
BioCyc:CPSY167879:GI48-1499-MONOMER Uniprot:Q485V4
Length = 401
Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
Identities = 125/379 (32%), Positives = 201/379 (53%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F +L LS + AI GY PT IQ+K +P++L+G D++A A+TG+GKTA+F++P+L++
Sbjct: 3 FSTLKLSTPILNAIADLGYTKPTAIQQKAIPVVLAGKDIIAAAQTGTGKTASFVLPLLEQ 62
Query: 85 LNQHVPQGG-------VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF 137
LN + G +RALIL PTR+LA+Q + +Y D+ + GG + Q
Sbjct: 63 LNSQYKETGKKLRAKRIRALILVPTRELAVQVEASISQYAKYLDISSMAMYGGVDAQEQK 122
Query: 138 EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS 197
+ L DI++ATPGRL+ ++ + ++ +V DEAD + MGF + ++KI+ +L
Sbjct: 123 QRLIWGVDILVATPGRLLD-MTHQRVLHFDELDMLVLDEADRMLDMGFIDDINKIIERLP 181
Query: 198 ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLY 257
E+RQ LLFSAT+ + AK + P + + D P ++ T+ + K A L +
Sbjct: 182 EHRQNLLFSATMSEEVRGLAKRTIHKPVEISIGADKASKPKIEQWLVTVDKANKSALLSH 241
Query: 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKT 317
+I + QQ LIF+ TKH L + G+ + QD R+ ++ F++ K
Sbjct: 242 IITTQ--NWQQALIFIETKHGAAKLVSQLEKRGIVAESIHSGRAQDIREKILNDFKSGKI 299
Query: 318 MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAY 377
FL+ T +AARG+DI L VIN+D P + ++HR+ S V+ ++
Sbjct: 300 KFLVATAIAARGLDIGELSRVINYDLPAQVDDYIHRIGRTGRAGASGEAISLVSKDNFRE 359
Query: 378 LLDLHLFLSKPIRAAPSEE 396
L + L I EE
Sbjct: 360 LCAIESRLGHIIERKEFEE 378
>UNIPROTKB|I3LQ10 [details] [associations]
symbol:LOC100626268 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 Ensembl:ENSSSCT00000028964 OMA:RYLVALC
Uniprot:I3LQ10
Length = 684
Score = 519 (187.8 bits), Expect = 4.8e-52, Sum P(2) = 4.8e-52
Identities = 125/339 (36%), Positives = 193/339 (56%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ +NLS + +AI G+K PTPIQ+ +P+ L G D+ A A TG+GKTAAF +P+L+R
Sbjct: 213 FQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLER 272
Query: 85 LNQHVPQGGV-RALILSPTRDLALQTLKFTKELGRYTDLRIS----LLVGGDSMESQFEE 139
L Q V R L+L PTR+L +Q TK+L + + I+ L GG ++SQ
Sbjct: 273 LIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQSSLCVITTISGLFAGGLDVKSQEAA 332
Query: 140 L-AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198
L A PDI+IATPGRL+ HL L S+E ++ DEAD + F EQ+ +I+ S
Sbjct: 333 LRAAXPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSL 392
Query: 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR--QEEKHAALL 256
+RQT+LFSAT+ + + A L++P + ++ +T ++P L+ F +R +E A++
Sbjct: 393 HRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIV 452
Query: 257 YMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVS-RFRAR 315
+ +D ++F TK +++L GL+ +G++ Q R + RF+
Sbjct: 453 AALLMRTFTDH-VMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRXLEALWRFKDE 511
Query: 316 KTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRV 354
+ L+ TDVAARG+DI + VIN+ P K +VHRV
Sbjct: 512 QIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRV 550
Score = 38 (18.4 bits), Expect = 4.8e-52, Sum P(2) = 4.8e-52
Identities = 22/120 (18%), Positives = 53/120 (44%)
Query: 475 KDLPREGLHPMFKNVLEGGELMALAFSERL-KAFRPKQTILEAEGEAARSKHLQGPSSQW 533
K++ + P+ +L + + L F +++ K + +L+ E E K +Q +Q
Sbjct: 567 KEIVKAAKAPVKARILP--QDVILKFRDKIEKMEKDVYAVLQLEAE---EKEMQKSEAQ- 620
Query: 534 VDVMKKKRAVHEKIINLVHQQRSSKSMEKEVEPEADSLMAKEIKETHGSKRKAKTFKDEE 593
++ ++ ++ N + S KE + S + + +K+ + K+K K K ++
Sbjct: 621 INTAQRLLEKGKEAPN--PEPERSWFQTKEERKKEKSKLGRFLKKLNNQKKKKKNQKKKK 678
>UNIPROTKB|Q9KLH6 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
Identities = 128/359 (35%), Positives = 194/359 (54%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L L + + G PTPIQ++ +P +L G DV+A A+TG+GKTAAF +P++QR
Sbjct: 8 FSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQR 67
Query: 85 L-----NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139
+ +RAL+L PTR+LA Q L + + T+L+I + GG SM+ Q
Sbjct: 68 FIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNH 127
Query: 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSEN 199
L DI+IATPGRL+ H + V+ + L VE +V DEAD + MGF L ++L +LS
Sbjct: 128 LRGGVDILIATPGRLLDH-AHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPL 186
Query: 200 RQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI 259
RQTL FSAT S + A +RDP V++ + ++ + + ++ K L Y+I
Sbjct: 187 RQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLI 246
Query: 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319
+ QQ L+F T+ + L + +G++ GD Q AR+ + F+A K
Sbjct: 247 GS--KNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRA 304
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYL 378
LI TDVAARG+DI L+ V+N+D P K + +VHR+ S ++ ++ L
Sbjct: 305 LIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQL 363
>TIGR_CMR|VC_A0768 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
Identities = 128/359 (35%), Positives = 194/359 (54%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L L + + G PTPIQ++ +P +L G DV+A A+TG+GKTAAF +P++QR
Sbjct: 8 FSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQR 67
Query: 85 L-----NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139
+ +RAL+L PTR+LA Q L + + T+L+I + GG SM+ Q
Sbjct: 68 FIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNH 127
Query: 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSEN 199
L DI+IATPGRL+ H + V+ + L VE +V DEAD + MGF L ++L +LS
Sbjct: 128 LRGGVDILIATPGRLLDH-AHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPL 186
Query: 200 RQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI 259
RQTL FSAT S + A +RDP V++ + ++ + + ++ K L Y+I
Sbjct: 187 RQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYLI 246
Query: 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319
+ QQ L+F T+ + L + +G++ GD Q AR+ + F+A K
Sbjct: 247 GS--KNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRA 304
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYL 378
LI TDVAARG+DI L+ V+N+D P K + +VHR+ S ++ ++ L
Sbjct: 305 LIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQL 363
>UNIPROTKB|Q4K8U0 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A" species:220664
"Pseudomonas protegens Pf-5" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0006950 "response to stress"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006950
GO:GO:0006355 GO:GO:0003723 EMBL:CP000076 GenomeReviews:CP000076_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
OMA:LPQGMPK RefSeq:YP_261343.1 ProteinModelPortal:Q4K8U0
GeneID:3477377 KEGG:pfl:PFL_4251 PATRIC:19877913
ProtClustDB:CLSK867560 BioCyc:PFLU220664:GIX8-4286-MONOMER
Uniprot:Q4K8U0
Length = 557
Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
Identities = 148/474 (31%), Positives = 241/474 (50%)
Query: 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPML 82
GGF +L L PN+ A+ GY+ P+ IQ++++P+IL+G D++ A+TG+GKTAAF +P+L
Sbjct: 6 GGFAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPIL 65
Query: 83 QRLN--QHVPQGGVRALILSPTRDLALQTLK-FTKELGRYTDLRISLLVGGDSMESQFEE 139
R++ + PQ ALIL+PTR+LALQ F + + + + GG M Q +
Sbjct: 66 HRIDPSKREPQ----ALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKA 121
Query: 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSEN 199
+ I++ATPGRL HL E + L +V ++V DEAD + +GF + L I + E
Sbjct: 122 IRNGAQIVVATPGRLCDHLRRDEKV-LATVNHLVLDEADEMLKLGFMDDLEVIFKAMPET 180
Query: 200 RQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI 259
RQT+LFSATLP ++ A+ L+DP V++ T+ ++ A + ++K +A+L ++
Sbjct: 181 RQTVLFSATLPQSIRAIAERHLKDPKHVKIQSKTQTVTAIEQAHLLVHADQKTSAVLSLL 240
Query: 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319
+ ++FV TK L +G + + GD+ Q+ R+ + + +
Sbjct: 241 E--VEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDI 298
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLL 379
++ TDVAARG+D+P + +V N D P P+ +VHR+ VT + L
Sbjct: 299 VVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQ 358
Query: 380 DLHLFLSKPIRAA--PSEEEVL-LDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVR 436
+ + + P + VL + + + + +A+ E +G DL+ DR+
Sbjct: 359 VIERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAEATHG-------DLL-DRLT 410
Query: 437 EIIDSS--ADLNSLQRTCTN--AFRLYS--KTKPLPSKESIRRGKDLPREGLHP 484
I S A +L R TN A L + K +PL S RG R G P
Sbjct: 411 ADIGCSPRALAAALLRKATNGQALNLAAIEKERPLVPN-SAPRGDRPERSGDRP 463
>TIGR_CMR|GSU_0491 [details] [associations]
symbol:GSU_0491 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:NP_951550.1 ProteinModelPortal:Q74FW1 GeneID:2686040
KEGG:gsu:GSU0491 PATRIC:22023733 OMA:TTHEHIE ProtClustDB:CLSK827872
BioCyc:GSUL243231:GH27-490-MONOMER Uniprot:Q74FW1
Length = 450
Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
Identities = 125/371 (33%), Positives = 204/371 (54%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L L+P++ +A+ GY PTP+Q +P L D++A A+TG+GKTAAF++P LQR
Sbjct: 3 FAELKLAPHILKAVAACGYTEPTPVQAAAVPRALENVDLLATAQTGTGKTAAFVLPALQR 62
Query: 85 LNQHVPQG---GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L+ PQG G R L+L+PTR+LA Q + G + +R ++GG +Q L+
Sbjct: 63 LSSP-PQGPGRGPRVLVLTPTRELAQQVTDAVRTYGAFMRVRSGAILGGMPYHAQLRLLS 121
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
D I+ATPGRL+ L + L +E +V DEAD + MGF++ + +I RQ
Sbjct: 122 APVDFIVATPGRLVDLLDR-RSLDLSRLELLVLDEADRMLDMGFSDDVDRIAAASPATRQ 180
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDV-DTKISPD-LKLAFFTLRQ-EEKHAALLYM 258
TLLF+AT+ SA+A A LR+P R+D+ TK + + ++ K+ L ++
Sbjct: 181 TLLFTATMDSAMARLAGRLLREPE--RIDIAGTKTTHEHIEQRLHVADDLHHKNRLLRHL 238
Query: 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
I + S ++ +IF +TK E L + + +G + +GDM Q+AR ++ + +
Sbjct: 239 ITDE--SLRRAIIFSATKRDAENLALELKAQGHSAAALHGDMPQNARNRTIAAMKQGRIR 296
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYL 378
L+ TDVAARG+D+ + +VIN+D P + +VHR+ SF + ++ YL
Sbjct: 297 LLVATDVAARGLDVTGISHVINFDLPKFAEDYVHRIGRTGRAGASGIAISFASLNEVNYL 356
Query: 379 LDLHLFLSKPI 389
+ ++ + +
Sbjct: 357 ARIERYIGQTL 367
>UNIPROTKB|F1NA53 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 EMBL:AADN02071779 EMBL:AADN02071780
IPI:IPI00684751 ProteinModelPortal:F1NA53
Ensembl:ENSGALT00000004949 ArrayExpress:F1NA53 Uniprot:F1NA53
Length = 402
Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
Identities = 135/386 (34%), Positives = 206/386 (53%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L L+P + ++ G PTP+Q +P IL G D + A+TGSGKTAAF++P+LQ
Sbjct: 4 FRELGLAPWLVEQARQMGLSRPTPVQASCIPPILQGRDCLGCAKTGSGKTAAFVLPVLQV 63
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L++ P G + L+L+PTR+LA Q + + LG+ L+ ++VGG M +Q EL++ P
Sbjct: 64 LSED-PYG-IFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCVVVGGLDMVAQALELSRKP 121
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG---FAEQLHKILGQLSENRQ 201
++IATPGRL HL SLK ++++V DEAD L G F L IL + RQ
Sbjct: 122 HVVIATPGRLADHLRSSNTFSLKKLKFLVLDEADRLLEQGCADFTADLEVILEAVPARRQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR- 260
TLLFSATL L E + P + + +L + + + K A L+++I+
Sbjct: 182 TLLFSATLTDTLNELKSLAMNRPFFWEAASEVRTVDELDQRYLLVPEAVKDAYLVHLIQT 241
Query: 261 ---EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVC-YGDMDQDARKIHVSRFRARK 316
EH D +IF T + LN++ R+ PSV + M Q R +++F++
Sbjct: 242 FQDEH--EDWSIIIFTKTCKECQILNMMLRKFSF-PSVALHSMMKQRQRFAALAKFKSSI 298
Query: 317 TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMA 376
LI TDVAARG+DIP + VIN + P PKI++HRV + VT D+
Sbjct: 299 FKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRNGISITMVTQYDIH 358
Query: 377 YLLDLHLFLSKPIRAAPSEEEVLLDM 402
+ + + ++ EE+++LD+
Sbjct: 359 LVHAIEEEIKLKLQEFSVEEKLVLDI 384
>UNIPROTKB|Q11039 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A homolog"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005618
GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842576 GO:GO:0006351 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
PIR:E70752 RefSeq:NP_215769.1 RefSeq:NP_335736.1
RefSeq:YP_006514628.1 ProteinModelPortal:Q11039 SMR:Q11039
PRIDE:Q11039 EnsemblBacteria:EBMYCT00000002426
EnsemblBacteria:EBMYCT00000070115 GeneID:13319832 GeneID:887069
GeneID:924778 KEGG:mtc:MT1292 KEGG:mtu:Rv1253 KEGG:mtv:RVBD_1253
PATRIC:18124606 TubercuList:Rv1253 OMA:LPQGMPK
ProtClustDB:CLSK791051 Uniprot:Q11039
Length = 563
Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
Identities = 144/463 (31%), Positives = 235/463 (50%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L + P V RAI GY+ PT IQ T+P +++G+DVV +A+TG+GKTAAF +PML +
Sbjct: 15 FADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSK 74
Query: 85 LN--QHVPQGGVRALILSPTRDLALQTLKFTKELGRY-TDLRISLLVGGDSMESQFEELA 141
++ VPQ AL+L PTR+LALQ + G Y + L + + GG S Q L
Sbjct: 75 IDITSKVPQ----ALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLR 130
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ +++ TPGR++ HL E + L V+++V DEAD + MGFA+ + +IL + E +Q
Sbjct: 131 RGAQVVVGTPGRMIDHL-ERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQ 189
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
LFSAT+P A+ + + L DP V T ++ ++ ++ + + K AL ++
Sbjct: 190 VALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVAR--KMDALTRVLE- 246
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ + ++FV TK E + R G + GD+ Q R+ ++ R L+
Sbjct: 247 -VEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILV 305
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDL 381
TDVAARG+D+ + +V+N+D P + +VHR+ FV+ ++ L +
Sbjct: 306 ATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAI 365
Query: 382 HLFLSKPIRAA--PSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREII 439
+ + A P+ E+V ++K +I N + G + LV + RE
Sbjct: 366 EKATRQTLTEAQLPTVEDVNTQR---VAKFADSITNA--LGGPGIELFRRLVEEYEREHD 420
Query: 440 DSSADLNS-LQRTCTN--AFRLYSKTKPLPSKESIRRGKDLPR 479
AD+ + L C AF L + PL + +R +D P+
Sbjct: 421 VPMADIAAALAVQCRGGEAF-LMAPDPPLSRRNRDQR-RDRPQ 461
>SGD|S000001212 [details] [associations]
symbol:DBP8 "ATPase, putative RNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0030686 "90S preribosome"
evidence=IDA] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0000447
"endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S
rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S
rRNA, LSU-rRNA)" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0000480 "endonucleolytic cleavage in 5'-ETS of
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000001212 GO:GO:0005524
GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:U00027 GO:GO:0030686
GO:GO:0004004 GO:GO:0000447 GO:GO:0000472 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 HOGENOM:HOG000268802
OrthoDB:EOG4PP1RW PIR:S48908 RefSeq:NP_012039.1
ProteinModelPortal:P38719 SMR:P38719 DIP:DIP-5628N IntAct:P38719
MINT:MINT-485349 STRING:P38719 PaxDb:P38719 PeptideAtlas:P38719
EnsemblFungi:YHR169W GeneID:856574 KEGG:sce:YHR169W CYGD:YHR169w
GeneTree:ENSGT00700000105515 OMA:FRNLCAI NextBio:982426
Genevestigator:P38719 GermOnline:YHR169W GO:GO:0000480
Uniprot:P38719
Length = 431
Score = 502 (181.8 bits), Expect = 6.5e-51, Sum P(2) = 6.5e-51
Identities = 124/363 (34%), Positives = 192/363 (52%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+SL LS + +++ PT IQ+ +P IL G D + A+TGSGKT AF PML +
Sbjct: 4 FKSLGLSKWLTESLRAMKITQPTAIQKACIPKILEGRDCIGGAKTGSGKTIAFAGPMLTK 63
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
++ P G + ++L+PTR+LA+Q + LG ++R+S++VGG+S+ Q +L + P
Sbjct: 64 WSED-PSG-MFGVVLTPTRELAMQIAEQFTALGSSMNIRVSVIVGGESIVQQALDLQRKP 121
Query: 145 DIIIATPGRLMHHL-SEVEDM--SLKSVEYVVFDEADCLFGMGFAEQLHKILGQL--SEN 199
IIATPGRL HH+ S +D L +Y+V DEAD L FA+ L + L +
Sbjct: 122 HFIIATPGRLAHHIMSSGDDTVGGLMRAKYLVLDEADILLTSTFADHLATCISALPPKDK 181
Query: 200 RQTLLFSATLPSALAEFAKAGLRD--PHLVRLDVDT----KISPDLKLAFFTLRQEEKHA 253
RQTLLF+AT+ + A ++ P L V++ I LK+ + + + K A
Sbjct: 182 RQTLLFTATITDQVKSLQNAPVQKGKPPLFAYQVESVDNVAIPSTLKIEYILVPEHVKEA 241
Query: 254 ALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFR 313
L ++ ++ +IFV+ E L ++ + + + M Q R + RFR
Sbjct: 242 YLYQLLTCEEYENKTAIIFVNRTMTAEILRRTLKQLEVRVASLHSQMPQQERTNSLHRFR 301
Query: 314 ARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSE 373
A LI TDVA+RG+DIP ++ V+N+D P P +F+HR SFVT
Sbjct: 302 ANAARILIATDVASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRIGDAISFVTQR 361
Query: 374 DMA 376
D++
Sbjct: 362 DVS 364
Score = 47 (21.6 bits), Expect = 6.5e-51, Sum P(2) = 6.5e-51
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 549 NLVHQQRS-SKSMEKEVEPEADSLMAKEIKETHGSKRKAKTFKDEE 593
N VH K++ K + + +SLMA + KE G +++ + K +
Sbjct: 381 NKVHDTAVIRKALTKVTKAKRESLMAMQ-KENFGERKRQQKKKQND 425
>TIGR_CMR|GSU_0522 [details] [associations]
symbol:GSU_0522 "ATP-dependent RNA helicase RhlB"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006401
"RNA catabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732
RefSeq:NP_951580.1 ProteinModelPortal:Q74FT4 GeneID:2685920
KEGG:gsu:GSU0522 PATRIC:22023799 OMA:LAYEFMN ProtClustDB:CLSK827899
BioCyc:GSUL243231:GH27-482-MONOMER Uniprot:Q74FT4
Length = 443
Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
Identities = 137/408 (33%), Positives = 215/408 (52%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F LNL V + + G+ TPIQ KT+PL L G DV A+TG+GKTAAFL+ + +
Sbjct: 3 FADLNLPEQVMQGVADAGFSDCTPIQEKTLPLSLGGKDVAGQAQTGTGKTAAFLISLFTK 62
Query: 85 LNQHVPQGGVR----ALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
L + +GG R A+IL+PTR+L +Q K + LG + I + GG Q L
Sbjct: 63 LLRS-GRGGERRHPRAIILAPTRELVVQIEKDAQVLGAHCGFTIQAIYGGVDYMKQKNAL 121
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS--E 198
+ D+++ TPGRL+ +L + + SLK +E +V DEAD +F MGF L IL +L +
Sbjct: 122 KEGADVVVGTPGRLIDYLKQ-KVYSLKEIEMLVIDEADRMFDMGFIADLRFILRRLPPYD 180
Query: 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258
RQ L+FSATL + E A + P V + + + ++ + + ++EK LL +
Sbjct: 181 KRQNLMFSATLNQRVMELAYEFMNVPEKVAVTPEQMTAERVEQVLYHVGRKEKFPLLLGL 240
Query: 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
+R+ ++T+IFV+TK EFL+ V GD++Q R + F++ K
Sbjct: 241 LRKE--GMERTMIFVNTKREAEFLDERLNANDFPCRVISGDVEQRKRLKILEDFKSGKLP 298
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYL 378
+I TDVA+RG+ I + +VIN+D P + +VHR+ S + ED A+
Sbjct: 299 IMIATDVASRGLHIDGVSHVINYDLPQDAEDYVHRIGRTARAGAEGKAIS-MADEDGAFH 357
Query: 379 LD-LHLFLSKPIRAAPSEEEVLL-DMDGVMS--KIDQAIANGETIYGR 422
L+ +H ++ I +E+++ + D V K + A G T +GR
Sbjct: 358 LEAIHEYIKDKIPVEWAEDDLFVHDFKRVKPRPKGQETRAKGPTRHGR 405
>UNIPROTKB|Q9KU63 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 OMA:PLAMDQR KO:K05590 ProtClustDB:PRK11192 PIR:F82295
RefSeq:NP_230309.1 ProteinModelPortal:Q9KU63 DNASU:2615450
GeneID:2615450 KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 500 (181.1 bits), Expect = 1.9e-50, Sum P(2) = 1.9e-50
Identities = 115/369 (31%), Positives = 194/369 (52%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L L P + AI+ G+ PT +Q + +P L G DV+A A TG+GKTAAF++P LQ
Sbjct: 5 FADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQY 64
Query: 85 LNQHVPQ--GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
L + G R LIL+PTR+LA+Q + + L + T L I + GG + + LA
Sbjct: 65 LLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILAT 124
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
DI++ATPGRL+ ++ + E +++E+++ DEAD + MGF + ++ + +QT
Sbjct: 125 TQDIVVATPGRLLEYI-DAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRKQT 183
Query: 203 LLFSATLPSALAE-FAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
LLFSATL E F L+DP +D + K++ + R ++ + + +
Sbjct: 184 LLFSATLEGRGVEGFTADLLKDP--AHVDAEPPRRERKKISQWYHRADDMPHKVELLKKI 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+++++F+ T+ + L + + + G+M QD R +SRFR L+
Sbjct: 242 LTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILL 301
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDL 381
TDVAARGID+P + +VIN+D P +++HR+ S V + D + +
Sbjct: 302 ATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARV 361
Query: 382 HLFLSKPIR 390
++ + ++
Sbjct: 362 ERYIKEEVK 370
Score = 45 (20.9 bits), Expect = 1.9e-50, Sum P(2) = 1.9e-50
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 540 KRAVHEKIINLV---HQQRSSKSMEKEVEPEADSLMAKEIKETHGSKRKAKTFK 590
K V E+ I+ + H++ K +K+++ AD K+ K T SK KAK K
Sbjct: 366 KEEVKERFIDGLRPKHKKPVFKKKKKDIKKTADKGAVKK-KTT--SKPKAKATK 416
Score = 37 (18.1 bits), Expect = 1.4e-49, Sum P(2) = 1.4e-49
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 648 KRGKKYIKLNNGERVSASGKVVK-TESGAKVKATK 681
K+ KK IK + + G V K T S K KATK
Sbjct: 387 KKKKKDIK-----KTADKGAVKKKTTSKPKAKATK 416
>TIGR_CMR|VC_0660 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003676 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
KO:K05590 ProtClustDB:PRK11192 PIR:F82295 RefSeq:NP_230309.1
ProteinModelPortal:Q9KU63 DNASU:2615450 GeneID:2615450
KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 500 (181.1 bits), Expect = 1.9e-50, Sum P(2) = 1.9e-50
Identities = 115/369 (31%), Positives = 194/369 (52%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L L P + AI+ G+ PT +Q + +P L G DV+A A TG+GKTAAF++P LQ
Sbjct: 5 FADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQY 64
Query: 85 LNQHVPQ--GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
L + G R LIL+PTR+LA+Q + + L + T L I + GG + + LA
Sbjct: 65 LLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILAT 124
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
DI++ATPGRL+ ++ + E +++E+++ DEAD + MGF + ++ + +QT
Sbjct: 125 TQDIVVATPGRLLEYI-DAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTECRWRKQT 183
Query: 203 LLFSATLPSALAE-FAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
LLFSATL E F L+DP +D + K++ + R ++ + + +
Sbjct: 184 LLFSATLEGRGVEGFTADLLKDP--AHVDAEPPRRERKKISQWYHRADDMPHKVELLKKI 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+++++F+ T+ + L + + + G+M QD R +SRFR L+
Sbjct: 242 LTEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILL 301
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDL 381
TDVAARGID+P + +VIN+D P +++HR+ S V + D + +
Sbjct: 302 ATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARV 361
Query: 382 HLFLSKPIR 390
++ + ++
Sbjct: 362 ERYIKEEVK 370
Score = 45 (20.9 bits), Expect = 1.9e-50, Sum P(2) = 1.9e-50
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 540 KRAVHEKIINLV---HQQRSSKSMEKEVEPEADSLMAKEIKETHGSKRKAKTFK 590
K V E+ I+ + H++ K +K+++ AD K+ K T SK KAK K
Sbjct: 366 KEEVKERFIDGLRPKHKKPVFKKKKKDIKKTADKGAVKK-KTT--SKPKAKATK 416
Score = 37 (18.1 bits), Expect = 1.4e-49, Sum P(2) = 1.4e-49
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 648 KRGKKYIKLNNGERVSASGKVVK-TESGAKVKATK 681
K+ KK IK + + G V K T S K KATK
Sbjct: 387 KKKKKDIK-----KTADKGAVKKKTTSKPKAKATK 416
>TAIR|locus:2086909 [details] [associations]
symbol:AT3G18600 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
[GO:0001510 "RNA methylation" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0034968
"histone lysine methylation" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AP001303 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY EMBL:AY070052 EMBL:AY096431 IPI:IPI00544206
RefSeq:NP_188490.1 UniGene:At.28418 ProteinModelPortal:Q9LIH9
SMR:Q9LIH9 STRING:Q9LIH9 PaxDb:Q9LIH9 PRIDE:Q9LIH9 DNASU:821391
EnsemblPlants:AT3G18600.1 GeneID:821391 KEGG:ath:AT3G18600
GeneFarm:1030 TAIR:At3g18600 InParanoid:Q9LIH9 PhylomeDB:Q9LIH9
ProtClustDB:CLSN2914752 Genevestigator:Q9LIH9 GermOnline:AT3G18600
Uniprot:Q9LIH9
Length = 568
Score = 524 (189.5 bits), Expect = 2.2e-50, P = 2.2e-50
Identities = 118/336 (35%), Positives = 198/336 (58%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+SL+LS AIK G++ T IQ ++ +L G DV+ ARTGSGKT AFL+P ++
Sbjct: 91 FDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVEL 150
Query: 85 L--NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
L + P+ G +++ PTR+LA+QT +EL ++ +S+++GG++ S+ + +A
Sbjct: 151 LFKERFSPRNGTGVIVICPTRELAIQTKNVAEELLKHHSQTVSMVIGGNNRRSEAQRIAS 210
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
+++IATPGRL+ HL + K ++ +V DEAD + F E ++KIL L + RQT
Sbjct: 211 GSNLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEADRILEENFEEDMNKILKILPKTRQT 270
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDT---KISPD-LKLAFFTLRQEEKHAALLYM 258
LFSAT S + + A+ L P V +DVD K++ + L+ + + +++ L+
Sbjct: 271 ALFSATQTSKVKDLARVSLTSP--VHVDVDDGRRKVTNEGLEQGYCVVPSKQRLILLISF 328
Query: 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
++++++ ++ ++F ST V+F + + ++ S +G MDQ+ R F K
Sbjct: 329 LKKNLN--KKIMVFFSTCKSVQFHTEIMKISDVDVSDIHGGMDQNRRTKTFFDFMKAKKG 386
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRV 354
L+ TDVAARG+DIP +D +I +D P KP ++HRV
Sbjct: 387 ILLCTDVAARGLDIPSVDWIIQYDPPDKPTEYIHRV 422
>UNIPROTKB|Q8EGU0 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 503 (182.1 bits), Expect = 2.7e-50, Sum P(2) = 2.7e-50
Identities = 124/376 (32%), Positives = 202/376 (53%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F++L LS + AI GY+ T +Q++ +PL L G D++A A+TG+GKTAAF +P+L++
Sbjct: 3 FDTLGLSSPLLNAITECGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVLEQ 62
Query: 85 LN-QHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L + + +RAL+++PTR+LA+Q ++ ++ L+ + GG +M Q + + Q
Sbjct: 63 LAAKPADKPLLRALVMTPTRELAIQVCANIQKYSQFLPLKTLAVYGGANMNPQRKGVEQG 122
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
DI++ATPGRL + + ++ L SV +V DEAD + +GF + K+ ++ QT+
Sbjct: 123 VDILVATPGRLFDIIGQF-NLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIAPVHQTM 181
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
LFSAT A+ + + L P V + +T S +L + R +++ A L
Sbjct: 182 LFSATYSDAVKQLSHKMLNQPQWVNVAENTTASTVEQLVY---RVDKRRKAELLSELVGR 238
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
++ +Q L+F STK E L +G+ V +GD Q AR + F+A K L+ T
Sbjct: 239 NNWRQVLVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLRVLVAT 298
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHL 383
DVAARG+DI L VIN + P + +VHR+ SFV+ D L ++
Sbjct: 299 DVAARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEMLAEIEA 358
Query: 384 FLSK--PIRAAPSEEE 397
+ + P+ P EE
Sbjct: 359 LIGEKLPVTVQPGYEE 374
Score = 40 (19.1 bits), Expect = 2.7e-50, Sum P(2) = 2.7e-50
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 663 SASGKVVKTESGAKVKATKTGIYKKWKER 691
SA GK ++++ A+ ++ G Y K K +
Sbjct: 408 SAGGKSSESQARARKSPSREGKYSKDKAK 436
>TIGR_CMR|SO_1501 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 503 (182.1 bits), Expect = 2.7e-50, Sum P(2) = 2.7e-50
Identities = 124/376 (32%), Positives = 202/376 (53%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F++L LS + AI GY+ T +Q++ +PL L G D++A A+TG+GKTAAF +P+L++
Sbjct: 3 FDTLGLSSPLLNAITECGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVLEQ 62
Query: 85 LN-QHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L + + +RAL+++PTR+LA+Q ++ ++ L+ + GG +M Q + + Q
Sbjct: 63 LAAKPADKPLLRALVMTPTRELAIQVCANIQKYSQFLPLKTLAVYGGANMNPQRKGVEQG 122
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
DI++ATPGRL + + ++ L SV +V DEAD + +GF + K+ ++ QT+
Sbjct: 123 VDILVATPGRLFDIIGQF-NLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIAPVHQTM 181
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
LFSAT A+ + + L P V + +T S +L + R +++ A L
Sbjct: 182 LFSATYSDAVKQLSHKMLNQPQWVNVAENTTASTVEQLVY---RVDKRRKAELLSELVGR 238
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
++ +Q L+F STK E L +G+ V +GD Q AR + F+A K L+ T
Sbjct: 239 NNWRQVLVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLRVLVAT 298
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHL 383
DVAARG+DI L VIN + P + +VHR+ SFV+ D L ++
Sbjct: 299 DVAARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEMLAEIEA 358
Query: 384 FLSK--PIRAAPSEEE 397
+ + P+ P EE
Sbjct: 359 LIGEKLPVTVQPGYEE 374
Score = 40 (19.1 bits), Expect = 2.7e-50, Sum P(2) = 2.7e-50
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 663 SASGKVVKTESGAKVKATKTGIYKKWKER 691
SA GK ++++ A+ ++ G Y K K +
Sbjct: 408 SAGGKSSESQARARKSPSREGKYSKDKAK 436
>UNIPROTKB|E9PIF2 [details] [associations]
symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 HGNC:HGNC:2735 ChiTaRS:DDX10 EMBL:AP002453
EMBL:AP003027 EMBL:AP003387 IPI:IPI00982941
ProteinModelPortal:E9PIF2 SMR:E9PIF2 Ensembl:ENST00000526794
UCSC:uc001pkl.1 ArrayExpress:E9PIF2 Bgee:E9PIF2 Uniprot:E9PIF2
Length = 835
Score = 520 (188.1 bits), Expect = 2.8e-50, Sum P(2) = 2.8e-50
Identities = 143/496 (28%), Positives = 245/496 (49%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F LS + ++ Y++ T IQ++T+ L L G DV+ A+TGSGKT AFLVP+L+
Sbjct: 71 FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEA 130
Query: 85 LN--QHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
L Q G+ LI+SPTR+LA QT + +++G+ D L++GG ++ + E +
Sbjct: 131 LYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-N 189
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
N +I++ TPGRL+ H+ E ++ +V DEAD + MGFA+ ++ ++ L + RQT
Sbjct: 190 NINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQT 249
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKIS-P-DLKLAFFTLRQEEKHAALLYMIR 260
LLFSAT ++ + A+ L++P V + K S P L+ + ++K + L +R
Sbjct: 250 LLFSATQTKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELQQKISVLYSFLR 309
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLF-R-EEGLEPSVCYGDMDQDARKIHV-SRFRARKT 317
H+ +++++F S+ V++L +F R G+ +G Q R++ V + F ++
Sbjct: 310 SHLK--KKSIVFFSSCKEVQYLYRVFCRLRPGVSILALHG-RQQQMRRMEVYNEFVRKRA 366
Query: 318 MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAY 377
L TD+AARG+D P ++ V+ +D P ++HR + + A
Sbjct: 367 AVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEKAM 426
Query: 378 LLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSD---- 433
+ L L P++ E L+D V K++ +A + + R + + V
Sbjct: 427 VQQL-LQKKVPVKEIKINPEKLID---VQKKLESILAQDQDLKERAQRCFVSYVRSVYLM 482
Query: 434 RVREIID-SSADLN----SLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKN 488
+ +E+ D S + SL R K + P+KE +R D E P N
Sbjct: 483 KDKEVFDVSKLPIPEYALSLGLAVAPRVRFLQKMQKQPTKELVRSQADKVIEPRAPSLTN 542
Query: 489 VLEGGELMALAFSERL 504
E E A F+E++
Sbjct: 543 D-EVEEFRAY-FNEKM 556
Score = 57 (25.1 bits), Expect = 2.8e-50, Sum P(2) = 2.8e-50
Identities = 29/128 (22%), Positives = 53/128 (41%)
Query: 552 HQQRSSKSMEKEVEPEADSL-MAKEIKETHGSKRKAKTFKDEEYFISSVPTN------HH 604
H+Q + E++ E E D M +++ + GS+ + E I VPT
Sbjct: 571 HRQDNDTGNEEQEEEEDDEEEMEEKLAKAKGSQAPSLPNTSEAQKIKEVPTQFLDRDEEE 630
Query: 605 MEAG-LSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQK-QVYHWDKRGKKYIKLNNGERV 662
+A L V+ FGL+ + L ++K+ +V K K+ K+N
Sbjct: 631 EDADFLKVKRHNVFGLDLKDEKTLQKKEPSKSSIKKKMTKVAEAKKVMKRNFKVNKKITF 690
Query: 663 SASGKVVK 670
+ G++V+
Sbjct: 691 TDEGELVQ 698
Score = 47 (21.6 bits), Expect = 3.2e-49, Sum P(2) = 3.2e-49
Identities = 22/105 (20%), Positives = 45/105 (42%)
Query: 550 LVHQQRSSKSMEKEVEPEADSLMAKEIKETHGSKRKAKTFKDEEYFISSVPTNHHMEAGL 609
L ++ S S++K++ A+ AK++ + + K TF DE + P
Sbjct: 654 LQKKEPSKSSIKKKMTKVAE---AKKVMKRNFKVNKKITFTDEGELVQQWPQMQKSAIKD 710
Query: 610 SVRSDQ--GFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKK 652
+ D G L++ + + + D +K+ + H +KR K+
Sbjct: 711 AEEDDDTGGINLHKAKERLQEEDKFDKEEYRKKIKAKHREKRLKE 755
Score = 41 (19.5 bits), Expect = 1.4e-48, Sum P(2) = 1.4e-48
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 561 EKEVEPEADSLMAKEIKE 578
+K +EP A SL E++E
Sbjct: 530 DKVIEPRAPSLTNDEVEE 547
>UNIPROTKB|I3L976 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF Ensembl:ENSSSCT00000025539 Uniprot:I3L976
Length = 456
Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
Identities = 122/333 (36%), Positives = 197/333 (59%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L ++ + A + G+ PT IQ + +PL L G D++ +A TGSGKT AF +P+L
Sbjct: 25 FKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNA 84
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGG-DSMESQFEELAQN 143
L + PQ + AL+L+PTR+LA Q + + LG ++ +++VGG DSM SQ LA+
Sbjct: 85 LLE-TPQR-LFALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSM-SQSLALAKK 141
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
P I+IATPGRL+ HL + +L++++Y+V DEAD + M F ++ KIL + +R+T
Sbjct: 142 PHIVIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTF 201
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLA--FFTLRQEEKHAALLYMIRE 261
LFSAT+ + + +A L++P V+ V +K KL + + + K L+Y++ E
Sbjct: 202 LFSATMTKKVQKLQRAALKNP--VKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVYILNE 259
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ +IF ST ++ + +L R G +G M Q R +++F+A+ L+
Sbjct: 260 --LAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILL 317
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRV 354
TDVA+RG+DIP +D V+N+D P K ++HRV
Sbjct: 318 ATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRV 350
>TAIR|locus:2152099 [details] [associations]
symbol:AT5G65900 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
EMBL:AL021684 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 EMBL:AB018108 EMBL:AY059930
EMBL:BT001188 EMBL:AJ012745 IPI:IPI00526354 PIR:T05883 PIR:T51352
RefSeq:NP_201391.1 UniGene:At.19658 UniGene:At.66704
ProteinModelPortal:Q9SB89 SMR:Q9SB89 PaxDb:Q9SB89 PRIDE:Q9SB89
EnsemblPlants:AT5G65900.1 GeneID:836719 KEGG:ath:AT5G65900
GeneFarm:951 TAIR:At5g65900 InParanoid:Q9SB89 OMA:HLENTNG
PhylomeDB:Q9SB89 ProtClustDB:CLSN2916378 Genevestigator:Q9SB89
GermOnline:AT5G65900 Uniprot:Q9SB89
Length = 633
Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
Identities = 125/384 (32%), Positives = 207/384 (53%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FESL+LS N +++IK G+ T IQ K +P ++ G DV+ ARTGSGKT AFL+P ++
Sbjct: 156 FESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAVEL 215
Query: 85 LNQ--HVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
L + P+ G L++ PTR+LA+Q+ KEL +Y + ++GG+ +++ E LA+
Sbjct: 216 LYRVKFTPRNGTGVLVICPTRELAIQSYGVAKELLKYHSQTVGKVIGGEKRKTEAEILAK 275
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
++++ATPGRL+ HL K+++++V DEAD + F E L KIL L + RQT
Sbjct: 276 GVNLLVATPGRLLDHLENTNGFIFKNLKFLVMDEADRILEQNFEEDLKKILNLLPKTRQT 335
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTK--ISPDLKLAFFTLRQEEKHAALLYMIR 260
LFSAT + + + A+ L P + +D K + L+ + + + LL ++
Sbjct: 336 SLFSATQSAKVEDLARVSLTSPVYIDVDEGRKEVTNEGLEQGYCVVPSAMRLLFLLTFLK 395
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
++ ++F ST +F LFR + G +DQ+ R +F +T L
Sbjct: 396 R-FQGKKKIMVFFSTCKSTKFHAELFRYIKFDCLEIRGGIDQNKRTPTFLQFIKAETGIL 454
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFV-TSEDMAYLL 379
+ T+VAARG+D P +D ++ +D P P ++HRV V T +++ ++
Sbjct: 455 LCTNVAARGLDFPHVDWIVQYDPPDNPTDYIHRVGRTARGEGAKGKALLVLTPQELKFIQ 514
Query: 380 DLHLFLSK-PIRAAPSEEEVLLDM 402
+L +K P+ EE+ LLD+
Sbjct: 515 --YLKAAKIPVEEHEFEEKKLLDV 536
>UNIPROTKB|Q13206 [details] [associations]
symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=TAS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CH471065
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268801 CTD:1662 HOVERGEN:HBG102756 OrthoDB:EOG4BK536
EMBL:U28042 EMBL:AB040537 EMBL:AK315216 EMBL:BC091521 EMBL:BC093654
EMBL:BC093656 IPI:IPI00297900 RefSeq:NP_004389.2 UniGene:Hs.591931
PDB:2PL3 PDBsum:2PL3 ProteinModelPortal:Q13206 SMR:Q13206
IntAct:Q13206 STRING:Q13206 PhosphoSite:Q13206 DMDM:76803554
SWISS-2DPAGE:Q13206 PaxDb:Q13206 PeptideAtlas:Q13206 PRIDE:Q13206
Ensembl:ENST00000322536 GeneID:1662 KEGG:hsa:1662 UCSC:uc001pkm.3
GeneCards:GC11P108569 HGNC:HGNC:2735 HPA:HPA004691 MIM:601235
neXtProt:NX_Q13206 PharmGKB:PA27200 InParanoid:Q13206 OMA:ADKVIEP
ChiTaRS:DDX10 EvolutionaryTrace:Q13206 GenomeRNAi:1662 NextBio:6838
ArrayExpress:Q13206 Bgee:Q13206 CleanEx:HS_DDX10
Genevestigator:Q13206 GermOnline:ENSG00000178105 Uniprot:Q13206
Length = 875
Score = 520 (188.1 bits), Expect = 4.8e-50, Sum P(2) = 4.8e-50
Identities = 143/496 (28%), Positives = 245/496 (49%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F LS + ++ Y++ T IQ++T+ L L G DV+ A+TGSGKT AFLVP+L+
Sbjct: 71 FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEA 130
Query: 85 LN--QHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
L Q G+ LI+SPTR+LA QT + +++G+ D L++GG ++ + E +
Sbjct: 131 LYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-N 189
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
N +I++ TPGRL+ H+ E ++ +V DEAD + MGFA+ ++ ++ L + RQT
Sbjct: 190 NINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQT 249
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKIS-P-DLKLAFFTLRQEEKHAALLYMIR 260
LLFSAT ++ + A+ L++P V + K S P L+ + ++K + L +R
Sbjct: 250 LLFSATQTKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELQQKISVLYSFLR 309
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLF-R-EEGLEPSVCYGDMDQDARKIHV-SRFRARKT 317
H+ +++++F S+ V++L +F R G+ +G Q R++ V + F ++
Sbjct: 310 SHLK--KKSIVFFSSCKEVQYLYRVFCRLRPGVSILALHG-RQQQMRRMEVYNEFVRKRA 366
Query: 318 MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAY 377
L TD+AARG+D P ++ V+ +D P ++HR + + A
Sbjct: 367 AVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEKAM 426
Query: 378 LLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSD---- 433
+ L L P++ E L+D V K++ +A + + R + + V
Sbjct: 427 VQQL-LQKKVPVKEIKINPEKLID---VQKKLESILAQDQDLKERAQRCFVSYVRSVYLM 482
Query: 434 RVREIID-SSADLN----SLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKN 488
+ +E+ D S + SL R K + P+KE +R D E P N
Sbjct: 483 KDKEVFDVSKLPIPEYALSLGLAVAPRVRFLQKMQKQPTKELVRSQADKVIEPRAPSLTN 542
Query: 489 VLEGGELMALAFSERL 504
E E A F+E++
Sbjct: 543 D-EVEEFRAY-FNEKM 556
Score = 57 (25.1 bits), Expect = 4.8e-50, Sum P(2) = 4.8e-50
Identities = 29/128 (22%), Positives = 53/128 (41%)
Query: 552 HQQRSSKSMEKEVEPEADSL-MAKEIKETHGSKRKAKTFKDEEYFISSVPTN------HH 604
H+Q + E++ E E D M +++ + GS+ + E I VPT
Sbjct: 571 HRQDNDTGNEEQEEEEDDEEEMEEKLAKAKGSQAPSLPNTSEAQKIKEVPTQFLDRDEEE 630
Query: 605 MEAG-LSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQK-QVYHWDKRGKKYIKLNNGERV 662
+A L V+ FGL+ + L ++K+ +V K K+ K+N
Sbjct: 631 EDADFLKVKRHNVFGLDLKDEKTLQKKEPSKSSIKKKMTKVAEAKKVMKRNFKVNKKITF 690
Query: 663 SASGKVVK 670
+ G++V+
Sbjct: 691 TDEGELVQ 698
Score = 47 (21.6 bits), Expect = 5.4e-49, Sum P(2) = 5.4e-49
Identities = 22/105 (20%), Positives = 45/105 (42%)
Query: 550 LVHQQRSSKSMEKEVEPEADSLMAKEIKETHGSKRKAKTFKDEEYFISSVPTNHHMEAGL 609
L ++ S S++K++ A+ AK++ + + K TF DE + P
Sbjct: 654 LQKKEPSKSSIKKKMTKVAE---AKKVMKRNFKVNKKITFTDEGELVQQWPQMQKSAIKD 710
Query: 610 SVRSDQ--GFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKK 652
+ D G L++ + + + D +K+ + H +KR K+
Sbjct: 711 AEEDDDTGGINLHKAKERLQEEDKFDKEEYRKKIKAKHREKRLKE 755
Score = 41 (19.5 bits), Expect = 2.3e-48, Sum P(2) = 2.3e-48
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 561 EKEVEPEADSLMAKEIKE 578
+K +EP A SL E++E
Sbjct: 530 DKVIEPRAPSLTNDEVEE 547
>WB|WBGene00019219 [details] [associations]
symbol:H20J04.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0002009 GO:GO:0040010
GO:GO:0003676 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14778 HOGENOM:HOG000268802
GeneTree:ENSGT00670000098028 OMA:CQLLSMT EMBL:FO080156
RefSeq:NP_001040789.1 ProteinModelPortal:Q2WF63 SMR:Q2WF63
PaxDb:Q2WF63 EnsemblMetazoa:H20J04.4b GeneID:186756
KEGG:cel:CELE_H20J04.4 UCSC:H20J04.4a CTD:186756 WormBase:H20J04.4b
InParanoid:Q2WF63 NextBio:932876 ArrayExpress:Q2WF63 Uniprot:Q2WF63
Length = 561
Score = 500 (181.1 bits), Expect = 5.1e-50, Sum P(2) = 5.1e-50
Identities = 120/372 (32%), Positives = 198/372 (53%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L + + + ++ K TP+Q +P IL G+D++ ARTG+GKT AF +P+LQ+
Sbjct: 91 FSQLGVCSWITQQLQTMQIKTATPVQAACIPKILEGSDILGCARTGTGKTLAFAIPILQK 150
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L+ V G+ ALIL+PTR+LA Q + LG+ L+ S++VGG S+ Q EL++ P
Sbjct: 151 LS--VDPYGIYALILTPTRELAFQIAEQFTALGKPITLKCSVIVGGRSLIHQARELSERP 208
Query: 145 DIIIATPGRLMHHL-SEVEDMS--LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+++ATPGRL + S+ + ++ K +++ V DEAD + + +QL I +SE RQ
Sbjct: 209 HVVVATPGRLADLIESDPDTIAKVFKKIQFFVLDEADRMLEGQYNDQLKPIFESISEKRQ 268
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVR-LDVDTKISPD-LKLAFFTLRQEEKHAALLYMI 259
TLL SAT+ + + + R P+ D + + D L+ + K A L+Y++
Sbjct: 269 TLLLSATITNNINMLHRVSTRKPYFFEDKGKDDESTVDRLEQKYVVCPVAVKDAYLVYVV 328
Query: 260 REHISSDQQT--LIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKT 317
+ + + ++ +IF T + L +F G + + Q R +S FR++
Sbjct: 329 KNYSEKNPKSSVMIFAQTCRECQALAYMFEGLGFRVGSLHSQIPQKQRLAALSAFRSKTL 388
Query: 318 MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAY 377
+I TDVA+RG+DIP +D V+N + P PK ++HRV SFVT D+
Sbjct: 389 QVIICTDVASRGLDIPHVDLVVNHNVPQCPKTYIHRVGRSARAGRFGSALSFVTQYDVEL 448
Query: 378 LLDLHLFLSKPI 389
L + + K +
Sbjct: 449 LQAVEQVIGKKL 460
Score = 41 (19.5 bits), Expect = 5.1e-50, Sum P(2) = 5.1e-50
Identities = 18/70 (25%), Positives = 33/70 (47%)
Query: 500 FSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIIN-LVHQQRSSK 558
F E+ + R K+ ++ E +HL+ ++ + K+K EKI L + R K
Sbjct: 493 FGEKKEINRRKELLMSGMDEDEADRHLEEMRTRRMTNSKRKL---EKISGQLDKRDRFQK 549
Query: 559 SME-KEVEPE 567
+ K+V+ E
Sbjct: 550 KLAAKKVKKE 559
>UNIPROTKB|Q81JK1 [details] [associations]
symbol:BAS5307 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 503 (182.1 bits), Expect = 5.5e-50, Sum P(2) = 5.5e-50
Identities = 122/379 (32%), Positives = 207/379 (54%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F + LS V RA+ GY+ PT +Q + +P+ L D+V ++TGSGKTA+F +P+ +
Sbjct: 6 FSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65
Query: 85 LN--QHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
+ ++ PQ AL+L+PTR+LA+Q + +GR+ ++ + + G Q EL Q
Sbjct: 66 VEWEENKPQ----ALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQ 121
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
I++ TPGR++ H+ E +SL+ ++Y+V DEAD + MGF +Q+ I+ +L R T
Sbjct: 122 KTHIVVGTPGRVLDHI-EKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMT 180
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
+LFSATLP + ++ + P + + + ++ F +R+EEK +LL +
Sbjct: 181 MLFSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEK-LSLLKDVTT- 238
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
I + +IF T+ +V+ + +G M Q+ R + FR K +L+
Sbjct: 239 IENPDSCIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVA 298
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLH 382
TDVAARGIDI + +VIN+D P + + +VHR +F+T + +L ++
Sbjct: 299 TDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEIE 358
Query: 383 LFLSKPI-RA-APSEEEVL 399
++ I +A APS+EEV+
Sbjct: 359 AYIGFAIPKANAPSKEEVM 377
Score = 37 (18.1 bits), Expect = 5.5e-50, Sum P(2) = 5.5e-50
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 529 PSSQWVDVMKKKRAVHEKI 547
PS + +VMK K A EKI
Sbjct: 371 PSKE--EVMKGKAAFEEKI 387
>TIGR_CMR|BA_5703 [details] [associations]
symbol:BA_5703 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 503 (182.1 bits), Expect = 5.5e-50, Sum P(2) = 5.5e-50
Identities = 122/379 (32%), Positives = 207/379 (54%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F + LS V RA+ GY+ PT +Q + +P+ L D+V ++TGSGKTA+F +P+ +
Sbjct: 6 FSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEM 65
Query: 85 LN--QHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
+ ++ PQ AL+L+PTR+LA+Q + +GR+ ++ + + G Q EL Q
Sbjct: 66 VEWEENKPQ----ALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQ 121
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
I++ TPGR++ H+ E +SL+ ++Y+V DEAD + MGF +Q+ I+ +L R T
Sbjct: 122 KTHIVVGTPGRVLDHI-EKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMT 180
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
+LFSATLP + ++ + P + + + ++ F +R+EEK +LL +
Sbjct: 181 MLFSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEK-LSLLKDVTT- 238
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
I + +IF T+ +V+ + +G M Q+ R + FR K +L+
Sbjct: 239 IENPDSCIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVA 298
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLH 382
TDVAARGIDI + +VIN+D P + + +VHR +F+T + +L ++
Sbjct: 299 TDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEIE 358
Query: 383 LFLSKPI-RA-APSEEEVL 399
++ I +A APS+EEV+
Sbjct: 359 AYIGFAIPKANAPSKEEVM 377
Score = 37 (18.1 bits), Expect = 5.5e-50, Sum P(2) = 5.5e-50
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 529 PSSQWVDVMKKKRAVHEKI 547
PS + +VMK K A EKI
Sbjct: 371 PSKE--EVMKGKAAFEEKI 387
>UNIPROTKB|Q8ECL2 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
Identities = 128/356 (35%), Positives = 187/356 (52%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L + + + GY PTP+Q T+P +LSG DV+A A TGSGKTAAF +P+LQR
Sbjct: 11 FAELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQR 70
Query: 85 LNQ----HVPQGGVRALILSPTRDLALQTL-KFTKELGRYT-DLRISLLVGGDSMESQFE 138
L++ G VR L+L PTR+LA Q F + L+I GG S+ Q +
Sbjct: 71 LSEAKSADKSAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQMQ 130
Query: 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198
L D+++ATPGRL+ L+ + L V V DEAD + +GF E+L ++L L
Sbjct: 131 SLRAGADVLVATPGRLLDLLAS-NALKLTQVSAFVLDEADRMLSLGFTEELEQVLAALPR 189
Query: 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258
+QTLLFSAT P + L P L + + + + ++ T+ +E+K A L ++
Sbjct: 190 QKQTLLFSATFPEEVRALTTKLLHQPLEYHLQSEQESTIEQRV--ITVNREQKTALLAHL 247
Query: 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
I++H S Q LIFVS K+ L + G+ V +GD Q AR + F+ +
Sbjct: 248 IKQHQWS--QALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEIS 305
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSED 374
LI TD+AARGIDI L VIN+D P P ++HR+ + ++ E+
Sbjct: 306 VLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEE 361
>TIGR_CMR|SO_3125 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
Identities = 128/356 (35%), Positives = 187/356 (52%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L + + + GY PTP+Q T+P +LSG DV+A A TGSGKTAAF +P+LQR
Sbjct: 11 FAELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQR 70
Query: 85 LNQ----HVPQGGVRALILSPTRDLALQTL-KFTKELGRYT-DLRISLLVGGDSMESQFE 138
L++ G VR L+L PTR+LA Q F + L+I GG S+ Q +
Sbjct: 71 LSEAKSADKSAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQMQ 130
Query: 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198
L D+++ATPGRL+ L+ + L V V DEAD + +GF E+L ++L L
Sbjct: 131 SLRAGADVLVATPGRLLDLLAS-NALKLTQVSAFVLDEADRMLSLGFTEELEQVLAALPR 189
Query: 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258
+QTLLFSAT P + L P L + + + + ++ T+ +E+K A L ++
Sbjct: 190 QKQTLLFSATFPEEVRALTTKLLHQPLEYHLQSEQESTIEQRV--ITVNREQKTALLAHL 247
Query: 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
I++H S Q LIFVS K+ L + G+ V +GD Q AR + F+ +
Sbjct: 248 IKQHQWS--QALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEIS 305
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSED 374
LI TD+AARGIDI L VIN+D P P ++HR+ + ++ E+
Sbjct: 306 VLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEE 361
>POMBASE|SPBP8B7.16c [details] [associations]
symbol:dbp2 "ATP-dependent RNA helicase Dbp2"
species:4896 "Schizosaccharomyces pombe" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBP8B7.16c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 GO:GO:0000184
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY OrthoDB:EOG47SWP6
EMBL:X52648 EMBL:L11574 PIR:T40810 RefSeq:NP_596523.1
ProteinModelPortal:P24782 IntAct:P24782 STRING:P24782 PRIDE:P24782
EnsemblFungi:SPBP8B7.16c.1 GeneID:2541383 KEGG:spo:SPBP8B7.16c
NextBio:20802492 Uniprot:P24782
Length = 550
Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
Identities = 120/368 (32%), Positives = 197/368 (53%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE V + +K+ G++ PTPIQ++ P+ +SG D+V ++ TGSGKT ++ +P +
Sbjct: 124 FEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVH 183
Query: 85 LNQHV---PQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
+N P G L+L+PTR+LA+Q + + G+ + +R + + GG Q +L
Sbjct: 184 INAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLI 243
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ +I IATPGRL+ L +L+ V Y+V DEAD + MGF Q+ KI+ Q+ +RQ
Sbjct: 244 RGVEICIATPGRLLDMLDS-NKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 302
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRL-DVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
T++FSAT P + A+ L D V + +D S ++K + +K A L I
Sbjct: 303 TVMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLGKDIE 362
Query: 261 EHISS-DQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319
E + D + LIF TK + + R++G +GD QD R ++ FR K+
Sbjct: 363 EVLKDRDNKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPI 422
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLL 379
++ TDVA+RGID+ + +V N+DFP + +VHR+ +++ TS++
Sbjct: 423 MVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQAR 482
Query: 380 DLHLFLSK 387
+L LS+
Sbjct: 483 ELVSILSE 490
>CGD|CAL0004095 [details] [associations]
symbol:TIF species:5476 "Candida albicans" [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0016281 "eukaryotic translation initiation factor 4F complex"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0004095 GO:GO:0005524
GO:GO:0005737 GO:GO:0003743 EMBL:AACQ01000045 EMBL:AACQ01000042
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K03257
EMBL:D84472 RefSeq:XP_718147.1 RefSeq:XP_718416.1
ProteinModelPortal:P87206 STRING:P87206 PRIDE:P87206 GeneID:3639917
GeneID:3640190 KEGG:cal:CaO19.10834 KEGG:cal:CaO19.3324
Uniprot:P87206
Length = 397
Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
Identities = 119/371 (32%), Positives = 189/371 (50%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ LNL PN+ R I GY+ P+ IQ++ + I G DV+A A++G+GKTA F + LQR
Sbjct: 25 FDDLNLKPNIVRGIFGYGYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQR 84
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
+N++ + +ALIL+PTR+LALQ +G Y + + +GG SM E
Sbjct: 85 INEN--EKATQALILAPTRELALQIKNVITAIGLYLKVTVHASIGGTSMSDDIEAFRSGV 142
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
I++ TPGR++ + E V+ + DEAD + GF EQ++ I L E Q +L
Sbjct: 143 QIVVGTPGRVLDMI-ERRYFKTDKVKMFILDEADEMLSSGFKEQIYNIFRLLPETTQIVL 201
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
SAT+P + E + +P + + D +K + + E+ L + + IS
Sbjct: 202 LSATMPQDVLEVTTKFMNNPVRILVKKDELTLEGIKQFYINVELEDYKFDCLCDLYDSIS 261
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
Q +IF +T+ VEFL RE+ S + D+ Q R + FR+ + LI TD
Sbjct: 262 VTQ-AVIFCNTRSKVEFLTNKLREQHFTVSAIHADLPQAERDTIMKEFRSGSSRILISTD 320
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHLF 384
+ ARGID+ + VIN+D P + ++HR+ +FVT D+ + ++ F
Sbjct: 321 LLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTDRDVGMMREIEKF 380
Query: 385 LSKPIRAAPSE 395
S I P++
Sbjct: 381 YSTQIEEMPAD 391
>UNIPROTKB|P87206 [details] [associations]
symbol:TIF1 "ATP-dependent RNA helicase eIF4A"
species:237561 "Candida albicans SC5314" [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0004095
GO:GO:0005524 GO:GO:0005737 GO:GO:0003743 EMBL:AACQ01000045
EMBL:AACQ01000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K03257 EMBL:D84472 RefSeq:XP_718147.1 RefSeq:XP_718416.1
ProteinModelPortal:P87206 STRING:P87206 PRIDE:P87206 GeneID:3639917
GeneID:3640190 KEGG:cal:CaO19.10834 KEGG:cal:CaO19.3324
Uniprot:P87206
Length = 397
Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
Identities = 119/371 (32%), Positives = 189/371 (50%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ LNL PN+ R I GY+ P+ IQ++ + I G DV+A A++G+GKTA F + LQR
Sbjct: 25 FDDLNLKPNIVRGIFGYGYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQR 84
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
+N++ + +ALIL+PTR+LALQ +G Y + + +GG SM E
Sbjct: 85 INEN--EKATQALILAPTRELALQIKNVITAIGLYLKVTVHASIGGTSMSDDIEAFRSGV 142
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
I++ TPGR++ + E V+ + DEAD + GF EQ++ I L E Q +L
Sbjct: 143 QIVVGTPGRVLDMI-ERRYFKTDKVKMFILDEADEMLSSGFKEQIYNIFRLLPETTQIVL 201
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
SAT+P + E + +P + + D +K + + E+ L + + IS
Sbjct: 202 LSATMPQDVLEVTTKFMNNPVRILVKKDELTLEGIKQFYINVELEDYKFDCLCDLYDSIS 261
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
Q +IF +T+ VEFL RE+ S + D+ Q R + FR+ + LI TD
Sbjct: 262 VTQ-AVIFCNTRSKVEFLTNKLREQHFTVSAIHADLPQAERDTIMKEFRSGSSRILISTD 320
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHLF 384
+ ARGID+ + VIN+D P + ++HR+ +FVT D+ + ++ F
Sbjct: 321 LLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTDRDVGMMREIEKF 380
Query: 385 LSKPIRAAPSE 395
S I P++
Sbjct: 381 YSTQIEEMPAD 391
>FB|FBgn0021995 [details] [associations]
symbol:Rs1 "Rs1" species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0042254
"ribosome biogenesis" evidence=NAS] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE013599 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0016779 HSSP:P10081 GeneTree:ENSGT00550000074997 KO:K13181
CTD:6247 EMBL:BT004908 RefSeq:NP_651970.1 UniGene:Dm.11481
SMR:Q7JQN4 STRING:Q7JQN4 EnsemblMetazoa:FBtr0088788 GeneID:44087
KEGG:dme:Dmel_CG2173 UCSC:CG2173-RA FlyBase:FBgn0021995
InParanoid:Q7JQN4 OMA:EHYIHRV OrthoDB:EOG42NGFQ GenomeRNAi:44087
NextBio:836725 Uniprot:Q7JQN4
Length = 782
Score = 530 (191.6 bits), Expect = 8.6e-50, P = 8.6e-50
Identities = 126/396 (31%), Positives = 209/396 (52%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F +NLS + RAI GY PTPIQ T+P+ L G D+ A TG+GKTAA+++P L+R
Sbjct: 159 FYQMNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLER 218
Query: 85 LNQHVPQGG---VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L + P R L+L PTR+L Q + TK+L ++T + + L +GG +++Q L
Sbjct: 219 L-LYRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTTIDVGLAIGGLDVKAQEAVLR 277
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
QNPDI+IATPGRL+ H+ +L S+E ++ DEAD + FAEQ+ +I+ + RQ
Sbjct: 278 QNPDIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTRQ 337
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEK--HAALLYMI 259
T+LFSAT+ + + A L P V ++ + +++ +L+ F +R++++ +L +
Sbjct: 338 TMLFSATMSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILASL 397
Query: 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319
D ++FV TK L++L G+ +G++ Q R + +F+ +
Sbjct: 398 ICRTFHDH-CMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDV 456
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLL 379
LI TDVAARG+DI + VIN+ P + ++HRV S ++ +
Sbjct: 457 LIATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVK 516
Query: 380 DLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIAN 415
D+ I+ E++ ++ ++ I N
Sbjct: 517 DIIKNAESTIKNRIIPPEIIEKYRNKLTSLEPEIQN 552
>UNIPROTKB|Q8EE19 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
Identities = 120/356 (33%), Positives = 189/356 (53%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L L + +A+ GY+ PTPIQ + +P IL+G +V+A A+TG+GKTA+F++P+L R
Sbjct: 3 FSQLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLLHR 62
Query: 85 LNQ--HVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
+ VR++IL+PTR+LALQ + + +Y L + GG Q + L +
Sbjct: 63 FADAPKIRPKRVRSIILTPTRELALQVEQNINQYAKYLPLTAMAMYGGVDAAPQKKRLIE 122
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
D+++ATPGRL+ ++ + V +V DEAD + MGF E ++ I+ +L E RQ
Sbjct: 123 GVDLLVATPGRLLDMYTQ-RAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEKLPEQRQN 181
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
LLFSATL + AK + D + + S + T+ ++ K A L ++I+E+
Sbjct: 182 LLFSATLSKQVKALAKTAIPDAIEIEISRKNAASTQIDQWLTTVDKDRKSALLSHLIKEN 241
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
+ Q LIF+ TKH L + G+ + Q R+ + F+A K FL+
Sbjct: 242 --NWAQALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAIREQLLIDFKAGKVPFLVA 299
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYL 378
T V +RGIDI L+ VIN+D P + ++HR+ SFV+ +D L
Sbjct: 300 TGVVSRGIDIDALERVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDDFRNL 355
>TIGR_CMR|SO_2571 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
Identities = 120/356 (33%), Positives = 189/356 (53%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L L + +A+ GY+ PTPIQ + +P IL+G +V+A A+TG+GKTA+F++P+L R
Sbjct: 3 FSQLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLLHR 62
Query: 85 LNQ--HVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
+ VR++IL+PTR+LALQ + + +Y L + GG Q + L +
Sbjct: 63 FADAPKIRPKRVRSIILTPTRELALQVEQNINQYAKYLPLTAMAMYGGVDAAPQKKRLIE 122
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
D+++ATPGRL+ ++ + V +V DEAD + MGF E ++ I+ +L E RQ
Sbjct: 123 GVDLLVATPGRLLDMYTQ-RAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEKLPEQRQN 181
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
LLFSATL + AK + D + + S + T+ ++ K A L ++I+E+
Sbjct: 182 LLFSATLSKQVKALAKTAIPDAIEIEISRKNAASTQIDQWLTTVDKDRKSALLSHLIKEN 241
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
+ Q LIF+ TKH L + G+ + Q R+ + F+A K FL+
Sbjct: 242 --NWAQALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAIREQLLIDFKAGKVPFLVA 299
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYL 378
T V +RGIDI L+ VIN+D P + ++HR+ SFV+ +D L
Sbjct: 300 TGVVSRGIDIDALERVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDDFRNL 355
>TAIR|locus:2032910 [details] [associations]
symbol:RH36 "RNA helicase 36" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0006364 "rRNA processing" evidence=IMP] [GO:0009553 "embryo sac
development" evidence=IMP] [GO:0009791 "post-embryonic development"
evidence=IMP] [GO:0090406 "pollen tube" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0009561 "megagametogenesis"
evidence=IMP] [GO:0006606 "protein import into nucleus"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005634 GO:GO:0003676
GO:GO:0009791 GO:GO:0009561 EMBL:AC006341 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
HOGENOM:HOG000268802 OMA:EVRTVEQ GO:GO:0090406 IPI:IPI00521131
PIR:G86297 RefSeq:NP_173078.1 UniGene:At.51634
ProteinModelPortal:Q9SA27 SMR:Q9SA27 PaxDb:Q9SA27 PRIDE:Q9SA27
EnsemblPlants:AT1G16280.1 GeneID:838197 KEGG:ath:AT1G16280
KEGG:dosa:Os07t0633500-00 GeneFarm:1012 TAIR:At1g16280
InParanoid:Q9SA27 PhylomeDB:Q9SA27 ProtClustDB:CLSN2679781
Genevestigator:Q9SA27 GermOnline:AT1G16280 Uniprot:Q9SA27
Length = 491
Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
Identities = 138/396 (34%), Positives = 207/396 (52%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE L L+ K G + PTP+Q +P IL+G DV+ +A+TGSGKTAAF +P+L R
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHR 119
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L + P G V AL+++PTR+LA Q + K LG +LR S++VGG M +Q L P
Sbjct: 120 LAED-PYG-VFALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSLVSRP 177
Query: 145 DIIIATPGRLMHHLSEVEDMS--LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
I+I TPGR+ L D+ +++V DEAD + +GF ++L I L ++RQT
Sbjct: 178 HIVITTPGRIKVLLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQCLPKSRQT 237
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
LLFSAT+ S L + + K L F E+K A LY++ H
Sbjct: 238 LLFSATMTSNLQALLEHSSNKAYFYEAYEGLKTVDTLTQQFIF---EDKDAKELYLV--H 292
Query: 263 ISSDQQ------TLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK 316
I S + +IFVST + L+++ E +E + Q R +S+F++ K
Sbjct: 293 ILSQMEDKGIRSAMIFVSTCRTCQRLSLMLDELEVENIAMHSLNSQSMRLSALSKFKSGK 352
Query: 317 TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMA 376
L+ TDVA+RG+DIP +D VIN+D P P+ +VHRV S +T D+
Sbjct: 353 VPILLATDVASRGLDIPTVDLVINYDIPRDPRDYVHRVGRTARAGRGGLAVSIITETDVK 412
Query: 377 YLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQA 412
+ + + K + P ++V+ D V +K+ +A
Sbjct: 413 LIHKIEEEVGKKME--PYNKKVITDSLEV-TKVSKA 445
>TAIR|locus:2084178 [details] [associations]
symbol:DRH1 "DEAD box RNA helicase 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001202 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00397
PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194
SMART:SM00456 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000184 GO:GO:0003723
EMBL:AC009325 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AB010259 EMBL:AY062591 EMBL:AF428313 EMBL:AY050375
EMBL:BT000795 EMBL:BT009670 IPI:IPI00544638 IPI:IPI00545196
PIR:T52137 RefSeq:NP_001030619.1 RefSeq:NP_566141.1
RefSeq:NP_850492.1 RefSeq:NP_974206.1 UniGene:At.22096
ProteinModelPortal:Q8H136 SMR:Q8H136 IntAct:Q8H136 STRING:Q8H136
PaxDb:Q8H136 PRIDE:Q8H136 EnsemblPlants:AT3G01540.2
EnsemblPlants:AT3G01540.3 EnsemblPlants:AT3G01540.4 GeneID:821116
KEGG:ath:AT3G01540 GeneFarm:931 TAIR:At3g01540 InParanoid:Q8H136
OMA:DPSTEAY PhylomeDB:Q8H136 ProtClustDB:CLSN2687967
Genevestigator:Q8H136 GermOnline:AT3G01540 Uniprot:Q8H136
Length = 619
Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
Identities = 128/394 (32%), Positives = 207/394 (52%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP---M 81
FE+ P + R + G+ PTPIQ ++ P+ + G D+VA+A+TGSGKT +L+P
Sbjct: 160 FEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLH 219
Query: 82 LQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
LQR+ G L+LSPTR+LA Q + + GR + + + L GG Q +L
Sbjct: 220 LQRIRNDSRMGPT-ILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLE 278
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ DI++ATPGRL + + E+ +SL+ + Y+V DEAD + MGF Q+ KI+ ++ RQ
Sbjct: 279 RGADIVVATPGRL-NDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQ 337
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRL-DVDTKIS-PDLKLAFFTLRQEEKHAALLYMI 259
TL+++AT P + + A L +P V + +VD ++ + + EK L ++
Sbjct: 338 TLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRRLEQIL 397
Query: 260 REHISSDQQTLIFVSTKHHVEFLNV-LFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
R + +IF STK + L L R+ G + +GD Q R +++FR+ +T
Sbjct: 398 RSQ-EPGSKVIIFCSTKRMCDQLTRNLTRQFGA--AAIHGDKSQPERDNVLNQFRSGRTP 454
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYL 378
L+ TDVAARG+D+ + V+N+DFP + +VHR+ F+F +D +
Sbjct: 455 VLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHA 514
Query: 379 LDLHLFLSKPIRAAPSE-EEVLLDMDGVMSKIDQ 411
DL L + P + E+ G M+K +
Sbjct: 515 SDLIKILEGANQRVPPQIREMATRGGGGMNKFSR 548
>DICTYBASE|DDB_G0288501 [details] [associations]
symbol:ddx42 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0288501 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000154_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AAFI02000112 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
KO:K12835 RefSeq:XP_636700.1 ProteinModelPortal:Q54IV3
STRING:Q54IV3 EnsemblProtists:DDB0233432 GeneID:8626657
KEGG:ddi:DDB_G0288501 OMA:DRDKRGG Uniprot:Q54IV3
Length = 986
Score = 532 (192.3 bits), Expect = 1.5e-49, P = 1.5e-49
Identities = 128/365 (35%), Positives = 201/365 (55%)
Query: 34 VFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRL-NQ-HVPQ 91
+ +AI ++ + PTPIQ++ +P+ LSG D++A+A+TGSGKTA F+ P + + +Q ++ +
Sbjct: 316 LLQAIAKQSIETPTPIQKQAIPIALSGRDLIAIAKTGSGKTATFIWPSISHIMDQPYLEK 375
Query: 92 G-GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIAT 150
G G AL L+PTR+LA Q T + +Y L+ ++L GG S + Q +EL +II+AT
Sbjct: 376 GDGPIALFLAPTRELAHQIYLETLKYSKYFKLKTTVLYGGVSKQQQCKELKAGCEIIVAT 435
Query: 151 PGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLP 210
PGRL+ + +++ L V Y+V DEAD +F GF Q+ I+ + +RQTLLFSAT
Sbjct: 436 PGRLIDMI-KLKATKLNRVSYLVLDEADKMFDFGFGPQVLSIVNHVRPDRQTLLFSATFK 494
Query: 211 SALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTL 270
+ EFA+ L DP + + + + D+ L+ + L + S L
Sbjct: 495 PNVEEFARTILSDPIKISIGMIGSANSDITQIVQVLKSDSDKWNWLTNQLALLLSQGSVL 554
Query: 271 IFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGI 330
IFVSTK VE L+ + G + +GD +Q R + F+ K LI TDVAARG+
Sbjct: 555 IFVSTKVAVEQLSSNLTKFGFQTCTLHGDKNQIERSQTIQTFKEGKINILIATDVAARGL 614
Query: 331 DIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHLFLSKPIR 390
DIPL+ NV+N+D + HR+ ++ +T +D+ + +DL L +
Sbjct: 615 DIPLIKNVVNYDTSRDIESHTHRIGRTGRAGNTGVAYTLITPKDIHFSVDLIKNLESASQ 674
Query: 391 AAPSE 395
P E
Sbjct: 675 FVPPE 679
>GENEDB_PFALCIPARUM|PFB0860c [details] [associations]
symbol:PFB0860c "RNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AE001362
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802 HSSP:P10081
KO:K14777 PIR:C71604 RefSeq:XP_001349688.1
ProteinModelPortal:O96264 EnsemblProtists:PFB0860c:mRNA
GeneID:812770 KEGG:pfa:PFB0860c EuPathDB:PlasmoDB:PF3D7_0218400
OMA:KHRAKRV ProtClustDB:CLSZ2432676 Uniprot:O96264
Length = 562
Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
Identities = 130/381 (34%), Positives = 207/381 (54%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE LN+ + +IK G+K PT IQR+ +P D++ ++ TGSGKTA F++P+LQ
Sbjct: 158 FEDLNICEEILESIKELGWKKPTEIQREILPHAFLKKDIIGLSETGSGKTACFIIPILQD 217
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L V + AL++SPTR+L +Q + + LG + I + GG + +Q LA+ P
Sbjct: 218 LK--VNKQSFYALVISPTRELCIQISQNFQALGMNLLINICTIYGGVDIVTQSLNLAKKP 275
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
++I++TPGR++ HL+ + +LK+++Y+VFDEAD L F ++K+L L NR T L
Sbjct: 276 NVIVSTPGRILDHLNNTKGFNLKNLKYLVFDEADKLLSQDFESSINKLLLILPPNRITFL 335
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKL--AFFTLRQEEKHAALLYMIREH 262
FSAT+ +A+ KA L++P V+++V K S L + L + K+ L + +
Sbjct: 336 FSATMTKNVAKLKKACLKNP--VKVEVSNKYSTVSTLIETYIFLPLKYKYTYLSSLCFHY 393
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVC-YGDMDQDARKIHVSRFRARKTMFLI 321
+ +IF +T + LN R GL+ S+C +G + Q+ R ++ F+ K LI
Sbjct: 394 --QTRNIIIFTNTCATAQKLNFFCRNLGLK-SICLHGKLTQNQRLSSLNSFKVNKYNILI 450
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDL 381
T V ARG+D+ + VIN+D K ++HRV +FVT D+ L +
Sbjct: 451 STQVGARGLDLQDIKIVINFDIC-SCKEYIHRVGRTARAGRSGKSITFVTQYDVENFLAI 509
Query: 382 HLFLSKPIRAAPS--EEEVLL 400
L+K I E +VLL
Sbjct: 510 EKQLNKKIDKFTDLDENDVLL 530
>UNIPROTKB|O96264 [details] [associations]
symbol:PFB0860c "DEAD/DEAH box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
EMBL:AE001362 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 HSSP:P10081 KO:K14777 PIR:C71604
RefSeq:XP_001349688.1 ProteinModelPortal:O96264
EnsemblProtists:PFB0860c:mRNA GeneID:812770 KEGG:pfa:PFB0860c
EuPathDB:PlasmoDB:PF3D7_0218400 OMA:KHRAKRV ProtClustDB:CLSZ2432676
Uniprot:O96264
Length = 562
Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
Identities = 130/381 (34%), Positives = 207/381 (54%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE LN+ + +IK G+K PT IQR+ +P D++ ++ TGSGKTA F++P+LQ
Sbjct: 158 FEDLNICEEILESIKELGWKKPTEIQREILPHAFLKKDIIGLSETGSGKTACFIIPILQD 217
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L V + AL++SPTR+L +Q + + LG + I + GG + +Q LA+ P
Sbjct: 218 LK--VNKQSFYALVISPTRELCIQISQNFQALGMNLLINICTIYGGVDIVTQSLNLAKKP 275
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
++I++TPGR++ HL+ + +LK+++Y+VFDEAD L F ++K+L L NR T L
Sbjct: 276 NVIVSTPGRILDHLNNTKGFNLKNLKYLVFDEADKLLSQDFESSINKLLLILPPNRITFL 335
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKL--AFFTLRQEEKHAALLYMIREH 262
FSAT+ +A+ KA L++P V+++V K S L + L + K+ L + +
Sbjct: 336 FSATMTKNVAKLKKACLKNP--VKVEVSNKYSTVSTLIETYIFLPLKYKYTYLSSLCFHY 393
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVC-YGDMDQDARKIHVSRFRARKTMFLI 321
+ +IF +T + LN R GL+ S+C +G + Q+ R ++ F+ K LI
Sbjct: 394 --QTRNIIIFTNTCATAQKLNFFCRNLGLK-SICLHGKLTQNQRLSSLNSFKVNKYNILI 450
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDL 381
T V ARG+D+ + VIN+D K ++HRV +FVT D+ L +
Sbjct: 451 STQVGARGLDLQDIKIVINFDIC-SCKEYIHRVGRTARAGRSGKSITFVTQYDVENFLAI 509
Query: 382 HLFLSKPIRAAPS--EEEVLL 400
L+K I E +VLL
Sbjct: 510 EKQLNKKIDKFTDLDENDVLL 530
>TIGR_CMR|CPS_2658 [details] [associations]
symbol:CPS_2658 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 RefSeq:YP_269372.1
ProteinModelPortal:Q480Z7 GeneID:3520428 KEGG:cps:CPS_2658
PATRIC:21468367 OMA:ERNFDSS BioCyc:CPSY167879:GI48-2720-MONOMER
Uniprot:Q480Z7
Length = 399
Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
Identities = 113/361 (31%), Positives = 203/361 (56%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F++ +L ++ + KGYK PTPIQ++ +P +++G D++ +A+TG+GKTAAF +P++ +
Sbjct: 4 FKAFSLLESIIDRVNLKGYKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLPIINK 63
Query: 85 LNQH---VPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
++ + R+LIL+PTR+LA Q ++ + L+ ++ GG ++Q + +
Sbjct: 64 FGRNKIDIKAKSTRSLILTPTRELASQIMQNIDDYSDGLGLKTKVVYGGVGRQAQVDSIE 123
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
DI++ATPGRL+ L E D++ K++E V DEAD + MGF + + I+ +L ++RQ
Sbjct: 124 LGLDILVATPGRLLD-LIETGDINFKALEVFVLDEADTMLDMGFFKDVQSIISKLPKSRQ 182
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDL-KLAFFTLRQEEKHAALLYMIR 260
TLLFSAT+P+ + A+A L DP +++ +T ++ DL + + L + K LL+ I
Sbjct: 183 TLLFSATMPAEIEILAEAILTDPTKIQITAET-VTIDLVNQSVYHLDKSNK-VPLLFNIL 240
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
+ ++ LIF TK+ + + + + + + Q R+ + F+ L
Sbjct: 241 TK-ADYEKVLIFCKTKYGADIIVKALEKASITAASLHSGKTQAVREEALQNFKDSTLRVL 299
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLD 380
+ TDVAARGID+ + VIN++ P P+ ++HR+ SF D+ L +
Sbjct: 300 VATDVAARGIDVDNITLVINYNLPEDPRNYIHRIGRTARAGKSGMAISFAVENDIRQLTN 359
Query: 381 L 381
+
Sbjct: 360 I 360
>TIGR_CMR|SO_4034 [details] [associations]
symbol:SO_4034 "ATP-dependent RNA helicase DeaD"
species:211586 "Shewanella oneidensis MR-1" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0009631 "cold
acclimation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:LPQGMPK RefSeq:NP_719564.1
ProteinModelPortal:Q8EA75 GeneID:1171660 KEGG:son:SO_4034
PATRIC:23527732 ProtClustDB:CLSK907463 Uniprot:Q8EA75
Length = 623
Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
Identities = 120/378 (31%), Positives = 197/378 (52%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L LS N+ RA+ GY+ PTPIQ ++ +++G D++ A+TG+GKT AF +P+L +
Sbjct: 8 FRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLNK 67
Query: 85 L-NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEELAQ 142
+ +Q PQ L+L+PTR+LA+Q + ++ + + + GG SM+ Q L +
Sbjct: 68 VTSQTTPQ----ILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNALKR 123
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
P +I+ TPGR+M H+ + L++++ +V DEAD + MGF + + IL RQ
Sbjct: 124 GPQVIVGTPGRVMDHMRR-GTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPPQRQL 182
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
LFSAT+P + A L++ + + ++ F + Q K AL+ ++
Sbjct: 183 ALFSATMPEQIKRVANKHLKNATNISIAASHTTVDSIEQRFVQVSQHNKLEALVRVLE-- 240
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
+ + + +IFV T++ L G S +GDM+Q AR+ V + + K LI
Sbjct: 241 VENTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKNGKLDILIA 300
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLH 382
TDVAARG+D+ + +V+N+D P + +VHR+ FVTS +M L +
Sbjct: 301 TDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIE 360
Query: 383 LFLSKPIRA--APSEEEV 398
+ I PS E V
Sbjct: 361 RATNSRISPMKVPSPETV 378
>UNIPROTKB|A4QVP2 [details] [associations]
symbol:TIF1 "ATP-dependent RNA helicase eIF4A"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:CM001231 GO:GO:0043581 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K03257 OrthoDB:EOG4PG98F
RefSeq:XP_003711015.1 ProteinModelPortal:A4QVP2 SMR:A4QVP2
EnsemblFungi:MGG_04400T0 GeneID:2677872 KEGG:mgr:MGG_04400
Uniprot:A4QVP2
Length = 396
Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
Identities = 112/369 (30%), Positives = 195/369 (52%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ +NL + R I G++ P+ IQ++ + ++ G DV+A A++G+GKTA F + +LQ+
Sbjct: 25 FDEMNLKSELLRGIYAYGFERPSAIQQRAIMPVIKGHDVIAQAQSGTGKTATFSISVLQK 84
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
++ +V Q +ALIL+PTR+LA Q K +G + ++ +GG S+ + L P
Sbjct: 85 IDTNVKQ--CQALILAPTRELAQQIQKVVVAIGDFMNIECHACIGGTSVRDDMKALQDGP 142
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
+++ TPGR+ H + + + ++ V DEAD + GF EQ++ I L ++ Q +L
Sbjct: 143 QVVVGTPGRV-HDMIQRRFLKTDGMKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVVL 201
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
SAT+P + E +RDP + + D +K + + +EE L + E ++
Sbjct: 202 LSATMPQDVLEVTTKFMRDPVRILVKKDELTLEGIKQFYIAVEKEEWKLDTLSDLYETVT 261
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
Q +IF +T+ V++L S +GDMDQ R + + FR+ + LI TD
Sbjct: 262 ITQ-AVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMDQAQRDLIMKEFRSGSSRVLIATD 320
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHLF 384
+ ARGID+ + VIN+D P + ++HR+ +FVT++D+ + ++ F
Sbjct: 321 LLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQF 380
Query: 385 LSKPIRAAP 393
S I P
Sbjct: 381 YSTQIEEMP 389
>ZFIN|ZDB-GENE-040426-2802 [details] [associations]
symbol:eif4a2 "eukaryotic translation initiation
factor 4A, isoform 2" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-040426-2802 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00530000062880
EMBL:CT027646 EMBL:CU929049 IPI:IPI00507769
ProteinModelPortal:F1R166 Ensembl:ENSDART00000130781
ArrayExpress:F1R166 Bgee:F1R166 Uniprot:F1R166
Length = 411
Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
Identities = 117/370 (31%), Positives = 198/370 (53%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ +NL + R I G++ P+ IQ++ + + G DV+A A++G+GKTA F + +LQ+
Sbjct: 39 FDDMNLKETLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ 98
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL-AQN 143
L + Q +AL+L+PTR+LA Q K LG Y +GG ++ ++ ++L A+
Sbjct: 99 LE--IEQKETQALVLAPTRELAQQIQKVILALGDYMGASCHACIGGTNVRNEMQKLQAEA 156
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
P I++ TPGR+ L+ +S K ++ V DEAD + GF +Q+++I +LS N Q +
Sbjct: 157 PHIVVGTPGRVFDMLNR-RYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLSTNIQVV 215
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
L SAT+P+ + E +R+P + + + +K + + +EE L + E +
Sbjct: 216 LLSATMPADVLEVTTKFMREPVRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETL 275
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+ Q +IF++T+ V++L S +GDMDQ R I + FR+ + LI T
Sbjct: 276 TITQ-AVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDIIMREFRSGSSRVLITT 334
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHL 383
D+ ARGID+ + VIN+D P + ++HR+ +FVT ED L D+
Sbjct: 335 DLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIET 394
Query: 384 FLSKPIRAAP 393
F + + P
Sbjct: 395 FYNTTVEEMP 404
>UNIPROTKB|E1C2R8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0009791 "post-embryonic
development" evidence=IEA] [GO:0072358 "cardiovascular system
development" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
OMA:QQFPQPP EMBL:AADN02006148 EMBL:AADN02006147 IPI:IPI00594176
Ensembl:ENSGALT00000020002 Uniprot:E1C2R8
Length = 496
Score = 511 (184.9 bits), Expect = 5.5e-49, P = 5.5e-49
Identities = 127/388 (32%), Positives = 211/388 (54%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F + V A+ + + PTPIQ + PL LSG D+V +A+TGSGKT A+L+P +
Sbjct: 92 FHQCSFPQYVMDALMDQNFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVH 151
Query: 85 LNQ--HVPQG-GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
+N ++ +G G L+L+PTR+LA Q + + G+ + L+ + + GG Q +L
Sbjct: 152 INHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLE 211
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ +I IATPGRL+ L E +L+ Y+V DEAD + MGF Q+ KI+ Q+ +RQ
Sbjct: 212 RGVEICIATPGRLIDFL-EAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 270
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDV-DTKISPD---LKLAFFTLRQEEKHAALLY 257
TL++SAT P + + A+ L+D V+++V + ++S + L++ + E+ H +
Sbjct: 271 TLMWSATWPKEVRQLAEDFLQD--YVQINVGNLELSANHNILQIVDVCMESEKDHKLIQL 328
Query: 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVC-YGDMDQDARKIHVSRFRARK 316
M + +T+IFV TK + L R +G P++C +GD Q R ++ FR+ K
Sbjct: 329 MEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGW-PAMCIHGDKSQPERDWVLNEFRSGK 387
Query: 317 TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMA 376
LI TDVA+RG+D+ + VIN+D+P + +VHR+ ++F T ++
Sbjct: 388 APILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLK 447
Query: 377 YLLDLHLFLSKPIRAAPSEEEVLLDMDG 404
+L L + +A + L+D G
Sbjct: 448 QARELIKVLEEANQAINPKLMQLVDHRG 475
>UNIPROTKB|Q8JFP1 [details] [associations]
symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 GeneTree:ENSGT00530000062880 HSSP:P60842
KO:K03257 OrthoDB:EOG4640C1 CTD:1974 OMA:TENDARQ EMBL:AF515726
EMBL:AJ720280 IPI:IPI00588868 RefSeq:NP_989880.1 UniGene:Gga.4580
ProteinModelPortal:Q8JFP1 SMR:Q8JFP1 STRING:Q8JFP1 PRIDE:Q8JFP1
Ensembl:ENSGALT00000014135 Ensembl:ENSGALT00000039726 GeneID:395232
KEGG:gga:395232 InParanoid:Q8JFP1 NextBio:20815321
ArrayExpress:Q8JFP1 Uniprot:Q8JFP1
Length = 407
Score = 511 (184.9 bits), Expect = 5.5e-49, P = 5.5e-49
Identities = 116/370 (31%), Positives = 199/370 (53%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ +NL ++ R I G++ P+ IQ++ + + G DV+A A++G+GKTA F + +LQ+
Sbjct: 35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ 94
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL-AQN 143
L + + +AL+L+PTR+LA Q K LG Y +GG ++ ++ ++L A+
Sbjct: 95 LEIDLKE--TQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEA 152
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
P I++ TPGR+ L+ +S K ++ V DEAD + GF +Q+++I +LS N Q +
Sbjct: 153 PHIVVGTPGRVFDMLNR-RYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLSTNIQVV 211
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
L SAT+P + E K +R+P + + + +K + + +EE L + E +
Sbjct: 212 LLSATMPMDVLEVTKKFMREPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETL 271
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+ Q +IF++T+ V++L S +GDMDQ R + + FR+ + LI T
Sbjct: 272 TITQ-AVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITT 330
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHL 383
D+ ARGID+ + VIN+D P + ++HR+ +FVT ED L D+
Sbjct: 331 DLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIET 390
Query: 384 FLSKPIRAAP 393
F + + P
Sbjct: 391 FYNTTVEEMP 400
>UNIPROTKB|Q08DT0 [details] [associations]
symbol:DDX10 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
GeneTree:ENSGT00550000074980 CTD:1662 HOVERGEN:HBG102756
OrthoDB:EOG4BK536 OMA:ADKVIEP EMBL:DAAA02040206 EMBL:DAAA02040207
EMBL:DAAA02040208 EMBL:DAAA02040209 EMBL:DAAA02040210
EMBL:DAAA02040211 EMBL:DAAA02040212 EMBL:DAAA02040213
EMBL:DAAA02040214 EMBL:DAAA02040215 EMBL:DAAA02040216
EMBL:DAAA02040217 EMBL:BC123579 IPI:IPI00717487
RefSeq:NP_001070349.1 UniGene:Bt.63620 SMR:Q08DT0
Ensembl:ENSBTAT00000003086 GeneID:528483 KEGG:bta:528483
InParanoid:Q08DT0 NextBio:20874836 Uniprot:Q08DT0
Length = 876
Score = 513 (185.6 bits), Expect = 7.2e-49, Sum P(2) = 7.2e-49
Identities = 155/559 (27%), Positives = 269/559 (48%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F LS + ++ Y++ T IQ++T+ L L G DV+ A+TGSGKT AFLVP+L+
Sbjct: 71 FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEA 130
Query: 85 LN--QHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
L Q G+ LI+SPTR+LA QT + +++G+ D L++GG ++ + E +
Sbjct: 131 LYRLQWTSADGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-N 189
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
N +I++ TPGRL+ H+ E +++ +V DEAD + MGFA+ ++ I+ L + RQT
Sbjct: 190 NINILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPKKRQT 249
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKIS-P-DLKLAFFTLRQEEKHAALLYMIR 260
LLFSAT ++ + A+ L++P V + K S P L+ + ++K + L +R
Sbjct: 250 LLFSATQTKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELQQKISVLYSFLR 309
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLF-R-EEGLEPSVCYGDMDQDARKIHV-SRFRARKT 317
H+ +++++F S+ V++L +F R G+ +G Q R++ V + F ++
Sbjct: 310 SHLK--KKSIVFFSSCKEVQYLYRVFCRLRPGVSLLALHG-RQQQMRRMEVYNEFVRKRA 366
Query: 318 MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVT-SEDMA 376
L TD+AARG+D P ++ V+ +D P ++HR + SE+
Sbjct: 367 AVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEEKG 426
Query: 377 YLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSD--- 433
+ L L P++ E L+D V K++ +A + + R + I +
Sbjct: 427 MVQQL-LQKKVPVKEIKINPEKLID---VQKKLESFLAQDQDLKERAQRCFISYIRSVYL 482
Query: 434 -RVREIIDSS----ADLN-SLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFK 487
+ +EI D S +D SL R + + PSKE + + E P
Sbjct: 483 MKDKEIFDVSKLPISDYALSLGLAVAPRIRFLQRMQKQPSKELVVSEDNKVTEPRAPSLT 542
Query: 488 NVLEGGELMALAFSERLKAF-----RPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRA 542
N E E A F+E++ RP+ T + + + + + +D K +RA
Sbjct: 543 ND-EVEEFRAY-FNEKMSILQKGGKRPEGTGYRPDSGISDKEEEEKEDEEEMDE-KLRRA 599
Query: 543 VHEKIINLVHQQRSSKSME 561
+ ++ + S K E
Sbjct: 600 KGSPLESVPSSEESQKDRE 618
Score = 56 (24.8 bits), Expect = 7.2e-49, Sum P(2) = 7.2e-49
Identities = 27/106 (25%), Positives = 49/106 (46%)
Query: 550 LVHQQRSSKSMEKEVEPEADSLMAKEIKETHGSKRKAKTFKDEEYFISSVPTNHHMEAGL 609
L ++ S SM+K+V A+ AK++ + + K TF DE + P +
Sbjct: 658 LQKKEPSKSSMKKKVTKIAE---AKKVMKRNFKVNKKITFTDEGELVQQWPQVQKSVSKD 714
Query: 610 SVRSDQGFGLNRLEAAVLDLVADDSGGLQK-QKQVY--HWDKRGKK 652
+ D G+N L+ A L +D ++ +K++ H +KR K+
Sbjct: 715 TEEEDDAGGIN-LDKAKERLQEEDKFDKEEYRKKIKAKHREKRLKE 759
Score = 39 (18.8 bits), Expect = 4.4e-47, Sum P(2) = 4.4e-47
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 574 KEIKETHG----SKRKAKTFKDEEYFI 596
K +KE SKR+AK +EE F+
Sbjct: 755 KRLKEREARREASKRQAKARDEEEAFL 781
>UNIPROTKB|Q3SZ54 [details] [associations]
symbol:EIF4A1 "Eukaryotic initiation factor 4A-I"
species:9913 "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 GeneTree:ENSGT00530000062880 EMBL:BC103130
IPI:IPI00698793 RefSeq:NP_001029400.1 UniGene:Bt.14169
ProteinModelPortal:Q3SZ54 SMR:Q3SZ54 STRING:Q3SZ54 PRIDE:Q3SZ54
Ensembl:ENSBTAT00000000144 GeneID:504958 KEGG:bta:504958 CTD:1973
InParanoid:Q3SZ54 KO:K03257 OMA:IKMFILD OrthoDB:EOG4640C1
NextBio:20866906 Uniprot:Q3SZ54
Length = 406
Score = 510 (184.6 bits), Expect = 7.2e-49, P = 7.2e-49
Identities = 116/370 (31%), Positives = 196/370 (52%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ +NLS ++ R I G++ P+ IQ++ + + G DV+A A++G+GKTA F + +LQ+
Sbjct: 34 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 93
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN- 143
+ + +AL+L+PTR+LA Q K LG Y +GG ++ ++ ++L
Sbjct: 94 IELDLK--ATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 151
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
P II+ TPGR+ L+ +S K ++ V DEAD + GF +Q++ I +L+ N Q +
Sbjct: 152 PHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVV 210
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
L SAT+PS + E K +RDP + + + ++ + + +EE L + E +
Sbjct: 211 LLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETL 270
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+ Q +IF++T+ V++L S +GDMDQ R + + FR+ + LI T
Sbjct: 271 TITQ-AVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITT 329
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHL 383
D+ ARGID+ + VIN+D P + ++HR+ + VT ED L D+
Sbjct: 330 DLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIET 389
Query: 384 FLSKPIRAAP 393
F + I P
Sbjct: 390 FYNTSIEEMP 399
>UNIPROTKB|F1P895 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 OMA:PILEMED EMBL:AAEX03003619
EMBL:AAEX03003621 EMBL:AAEX03003620 Ensembl:ENSCAFT00000026357
Uniprot:F1P895
Length = 406
Score = 510 (184.6 bits), Expect = 7.2e-49, P = 7.2e-49
Identities = 116/370 (31%), Positives = 196/370 (52%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ +NLS ++ R I G++ P+ IQ++ + + G DV+A A++G+GKTA F + +LQ+
Sbjct: 34 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 93
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN- 143
+ + +AL+L+PTR+LA Q K LG Y +GG ++ ++ ++L
Sbjct: 94 IELDLK--ATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 151
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
P II+ TPGR+ L+ +S K ++ V DEAD + GF +Q++ I +L+ N Q +
Sbjct: 152 PHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVV 210
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
L SAT+PS + E K +RDP + + + ++ + + +EE L + E +
Sbjct: 211 LLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETL 270
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+ Q +IF++T+ V++L S +GDMDQ R + + FR+ + LI T
Sbjct: 271 TITQ-AVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITT 329
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHL 383
D+ ARGID+ + VIN+D P + ++HR+ + VT ED L D+
Sbjct: 330 DLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIET 389
Query: 384 FLSKPIRAAP 393
F + I P
Sbjct: 390 FYNTSIEEMP 399
>UNIPROTKB|J9NY67 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 CTD:1973 KO:K03257 OMA:IKMFILD
EMBL:AAEX03006506 EMBL:AAEX03006505 RefSeq:NP_001238871.1
ProteinModelPortal:J9NY67 Ensembl:ENSCAFT00000014379
GeneID:100688577 KEGG:cfa:100688577 Uniprot:J9NY67
Length = 406
Score = 510 (184.6 bits), Expect = 7.2e-49, P = 7.2e-49
Identities = 116/370 (31%), Positives = 196/370 (52%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ +NLS ++ R I G++ P+ IQ++ + + G DV+A A++G+GKTA F + +LQ+
Sbjct: 34 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 93
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN- 143
+ + +AL+L+PTR+LA Q K LG Y +GG ++ ++ ++L
Sbjct: 94 IELDLK--ATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 151
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
P II+ TPGR+ L+ +S K ++ V DEAD + GF +Q++ I +L+ N Q +
Sbjct: 152 PHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVV 210
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
L SAT+PS + E K +RDP + + + ++ + + +EE L + E +
Sbjct: 211 LLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETL 270
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+ Q +IF++T+ V++L S +GDMDQ R + + FR+ + LI T
Sbjct: 271 TITQ-AVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITT 329
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHL 383
D+ ARGID+ + VIN+D P + ++HR+ + VT ED L D+
Sbjct: 330 DLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIET 389
Query: 384 FLSKPIRAAP 393
F + I P
Sbjct: 390 FYNTSIEEMP 399
>UNIPROTKB|P60842 [details] [associations]
symbol:EIF4A1 "Eukaryotic initiation factor 4A-I"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0004386 "helicase activity"
evidence=TAS] [GO:0000339 "RNA cap binding" evidence=TAS]
[GO:0008135 "translation factor activity, nucleic acid binding"
evidence=TAS] [GO:0016281 "eukaryotic translation initiation factor
4F complex" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0019221 "cytokine-mediated signaling
pathway" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
Reactome:REACT_6900 EMBL:CH471108 GO:GO:0019048
Pathway_Interaction_DB:mtor_4pathway GO:GO:0006413 GO:GO:0016281
GO:GO:0031100 GO:GO:0003729 GO:GO:0019221 GO:GO:0008135
GO:GO:0004386 GO:GO:0003743 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000289 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 Reactome:REACT_1762 CTD:1973 KO:K03257
OMA:IKMFILD OrthoDB:EOG4640C1 EMBL:D13748 EMBL:BT019880
EMBL:BT019881 EMBL:AK312630 EMBL:AC016876 EMBL:BC006210
EMBL:BC009585 EMBL:BC073752 IPI:IPI00025491 PIR:S33681
RefSeq:NP_001191439.1 RefSeq:NP_001407.1 UniGene:Hs.129673 PDB:2G9N
PDB:2ZU6 PDB:3EIQ PDBsum:2G9N PDBsum:2ZU6 PDBsum:3EIQ
ProteinModelPortal:P60842 SMR:P60842 DIP:DIP-29755N IntAct:P60842
MINT:MINT-5001111 STRING:P60842 PhosphoSite:P60842 DMDM:46397463
PaxDb:P60842 PRIDE:P60842 DNASU:1973 Ensembl:ENST00000293831
Ensembl:ENST00000577269 GeneID:1973 KEGG:hsa:1973 UCSC:uc002gho.2
GeneCards:GC17P007476 HGNC:HGNC:3282 HPA:CAB011689 MIM:602641
neXtProt:NX_P60842 PharmGKB:PA27710 PhylomeDB:P60842 ChiTaRS:EIF4A1
EvolutionaryTrace:P60842 GenomeRNAi:1973 NextBio:7987
ArrayExpress:P60842 Bgee:P60842 CleanEx:HS_EIF4A1
Genevestigator:P60842 GermOnline:ENSG00000161960 GO:GO:0000339
Uniprot:P60842
Length = 406
Score = 510 (184.6 bits), Expect = 7.2e-49, P = 7.2e-49
Identities = 116/370 (31%), Positives = 196/370 (52%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ +NLS ++ R I G++ P+ IQ++ + + G DV+A A++G+GKTA F + +LQ+
Sbjct: 34 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 93
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN- 143
+ + +AL+L+PTR+LA Q K LG Y +GG ++ ++ ++L
Sbjct: 94 IELDLK--ATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 151
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
P II+ TPGR+ L+ +S K ++ V DEAD + GF +Q++ I +L+ N Q +
Sbjct: 152 PHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVV 210
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
L SAT+PS + E K +RDP + + + ++ + + +EE L + E +
Sbjct: 211 LLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETL 270
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+ Q +IF++T+ V++L S +GDMDQ R + + FR+ + LI T
Sbjct: 271 TITQ-AVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITT 329
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHL 383
D+ ARGID+ + VIN+D P + ++HR+ + VT ED L D+
Sbjct: 330 DLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIET 389
Query: 384 FLSKPIRAAP 393
F + I P
Sbjct: 390 FYNTSIEEMP 399
>UNIPROTKB|A6M928 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 CTD:1973 KO:K03257 OMA:IKMFILD
OrthoDB:EOG4640C1 EMBL:CU914279 EMBL:DQ351283 RefSeq:NP_001093666.1
UniGene:Ssc.22034 ProteinModelPortal:A6M928 SMR:A6M928 PRIDE:A6M928
Ensembl:ENSSSCT00000019541 GeneID:100101929 KEGG:ssc:100101929
Uniprot:A6M928
Length = 406
Score = 510 (184.6 bits), Expect = 7.2e-49, P = 7.2e-49
Identities = 116/370 (31%), Positives = 196/370 (52%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ +NLS ++ R I G++ P+ IQ++ + + G DV+A A++G+GKTA F + +LQ+
Sbjct: 34 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 93
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN- 143
+ + +AL+L+PTR+LA Q K LG Y +GG ++ ++ ++L
Sbjct: 94 IELDLK--ATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 151
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
P II+ TPGR+ L+ +S K ++ V DEAD + GF +Q++ I +L+ N Q +
Sbjct: 152 PHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVV 210
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
L SAT+PS + E K +RDP + + + ++ + + +EE L + E +
Sbjct: 211 LLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETL 270
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+ Q +IF++T+ V++L S +GDMDQ R + + FR+ + LI T
Sbjct: 271 TITQ-AVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITT 329
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHL 383
D+ ARGID+ + VIN+D P + ++HR+ + VT ED L D+
Sbjct: 330 DLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIET 389
Query: 384 FLSKPIRAAP 393
F + I P
Sbjct: 390 FYNTSIEEMP 399
>UNIPROTKB|Q81QF0 [details] [associations]
symbol:BAS2301 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 510 (184.6 bits), Expect = 7.2e-49, P = 7.2e-49
Identities = 119/382 (31%), Positives = 201/382 (52%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L +S ++ G TPIQ K +P+ILSG D++ A+TG+GKT AF++P+L++
Sbjct: 7 FLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEK 66
Query: 85 LNQHVPQGGVRALILSPTRDLALQ-TLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
++ V+ALI++PTR+LALQ T + K L + D+ + + GG + Q +L N
Sbjct: 67 IDPE--SSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
I++ATPGRL+ H+ E + L ++ +V DEAD + GF + IL + ++QT+
Sbjct: 125 THIVVATPGRLLDHIRR-ETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTM 183
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
LFSAT+P + + AK + +P ++++ + ++ K AL +++
Sbjct: 184 LFSATIPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVM---- 239
Query: 264 SSDQQTL--IFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
DQ L IF TK L + G + +GD+ Q R+ + FR K +LI
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDL 381
TDVAARG+D+ + +V N+D P + ++HR+ +FV ++D +L ++
Sbjct: 300 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359
Query: 382 HLFLSKPIRAAPSEEEVLLDMD 403
L PI+ E+ + +D
Sbjct: 360 EKTLGAPIQREIIEQPKIKRVD 381
>TIGR_CMR|BA_2475 [details] [associations]
symbol:BA_2475 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 510 (184.6 bits), Expect = 7.2e-49, P = 7.2e-49
Identities = 119/382 (31%), Positives = 201/382 (52%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L +S ++ G TPIQ K +P+ILSG D++ A+TG+GKT AF++P+L++
Sbjct: 7 FLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEK 66
Query: 85 LNQHVPQGGVRALILSPTRDLALQ-TLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
++ V+ALI++PTR+LALQ T + K L + D+ + + GG + Q +L N
Sbjct: 67 IDPE--SSDVQALIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQLRKLKGN 124
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
I++ATPGRL+ H+ E + L ++ +V DEAD + GF + IL + ++QT+
Sbjct: 125 THIVVATPGRLLDHIRR-ETIDLSNLSTIVLDEADQMLYFGFLYDIEDILDETPGSKQTM 183
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
LFSAT+P + + AK + +P ++++ + ++ K AL +++
Sbjct: 184 LFSATIPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVM---- 239
Query: 264 SSDQQTL--IFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
DQ L IF TK L + G + +GD+ Q R+ + FR K +LI
Sbjct: 240 DRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLI 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDL 381
TDVAARG+D+ + +V N+D P + ++HR+ +FV ++D +L ++
Sbjct: 300 ATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDEKHLEEI 359
Query: 382 HLFLSKPIRAAPSEEEVLLDMD 403
L PI+ E+ + +D
Sbjct: 360 EKTLGAPIQREIIEQPKIKRVD 381
>MGI|MGI:95303 [details] [associations]
symbol:Eif4a1 "eukaryotic translation initiation factor 4A1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0006413 "translational
initiation" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:95303 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989 CTD:1973
KO:K03257 OMA:IKMFILD OrthoDB:EOG4640C1 EMBL:X03039 EMBL:X03040
EMBL:L36611 EMBL:M22873 EMBL:L36608 EMBL:L36609 EMBL:L36610
EMBL:AB011595 EMBL:AK077429 EMBL:BC049915 IPI:IPI00118676
PIR:JS0039 RefSeq:NP_659207.1 UniGene:Mm.279821 UniGene:Mm.371557
UniGene:Mm.473799 ProteinModelPortal:P60843 SMR:P60843
MINT:MINT-202155 STRING:P60843 PhosphoSite:P60843
REPRODUCTION-2DPAGE:P60843 PaxDb:P60843 PRIDE:P60843
Ensembl:ENSMUST00000163666 GeneID:13681 KEGG:mmu:13681
InParanoid:P60843 NextBio:284438 Bgee:P60843 CleanEx:MM_EIF4A1
Genevestigator:P60843 GermOnline:ENSMUSG00000064241 Uniprot:P60843
Length = 406
Score = 510 (184.6 bits), Expect = 7.2e-49, P = 7.2e-49
Identities = 116/370 (31%), Positives = 196/370 (52%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ +NLS ++ R I G++ P+ IQ++ + + G DV+A A++G+GKTA F + +LQ+
Sbjct: 34 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 93
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN- 143
+ + +AL+L+PTR+LA Q K LG Y +GG ++ ++ ++L
Sbjct: 94 IELDLK--ATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 151
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
P II+ TPGR+ L+ +S K ++ V DEAD + GF +Q++ I +L+ N Q +
Sbjct: 152 PHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVV 210
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
L SAT+PS + E K +RDP + + + ++ + + +EE L + E +
Sbjct: 211 LLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETL 270
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+ Q +IF++T+ V++L S +GDMDQ R + + FR+ + LI T
Sbjct: 271 TITQ-AVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITT 329
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHL 383
D+ ARGID+ + VIN+D P + ++HR+ + VT ED L D+
Sbjct: 330 DLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIET 389
Query: 384 FLSKPIRAAP 393
F + I P
Sbjct: 390 FYNTSIEEMP 399
>UNIPROTKB|Q6P3V8 [details] [associations]
symbol:Eif4a1 "Protein Eif4a1" species:10116 "Rattus
norvegicus" [GO:0003743 "translation initiation factor activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:735141
GO:GO:0005524 GO:GO:0003743 EMBL:CH473948 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 CTD:1973 KO:K03257 OMA:IKMFILD
OrthoDB:EOG4640C1 EMBL:BC063812 IPI:IPI00369618 RefSeq:NP_955404.1
UniGene:Rn.91523 SMR:Q6P3V8 STRING:Q6P3V8
Ensembl:ENSRNOT00000049048 GeneID:287436 KEGG:rno:287436
InParanoid:Q6P3V8 NextBio:626135 Genevestigator:Q6P3V8
Uniprot:Q6P3V8
Length = 406
Score = 510 (184.6 bits), Expect = 7.2e-49, P = 7.2e-49
Identities = 116/370 (31%), Positives = 196/370 (52%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ +NLS ++ R I G++ P+ IQ++ + + G DV+A A++G+GKTA F + +LQ+
Sbjct: 34 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 93
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN- 143
+ + +AL+L+PTR+LA Q K LG Y +GG ++ ++ ++L
Sbjct: 94 IELDLK--ATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 151
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
P II+ TPGR+ L+ +S K ++ V DEAD + GF +Q++ I +L+ N Q +
Sbjct: 152 PHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVV 210
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
L SAT+PS + E K +RDP + + + ++ + + +EE L + E +
Sbjct: 211 LLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETL 270
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+ Q +IF++T+ V++L S +GDMDQ R + + FR+ + LI T
Sbjct: 271 TITQ-AVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITT 329
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHL 383
D+ ARGID+ + VIN+D P + ++HR+ + VT ED L D+
Sbjct: 330 DLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIET 389
Query: 384 FLSKPIRAAP 393
F + I P
Sbjct: 390 FYNTSIEEMP 399
>WB|WBGene00010260 [details] [associations]
symbol:F58E10.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:Z81555 PIR:T22917
RefSeq:NP_001041134.1 ProteinModelPortal:Q9XUW5 SMR:Q9XUW5
STRING:Q9XUW5 PaxDb:Q9XUW5 PRIDE:Q9XUW5 EnsemblMetazoa:F58E10.3a.1
EnsemblMetazoa:F58E10.3a.2 EnsemblMetazoa:F58E10.3a.3
EnsemblMetazoa:F58E10.3a.4 EnsemblMetazoa:F58E10.3a.5 GeneID:179897
KEGG:cel:CELE_F58E10.3 UCSC:F58E10.3a.1 CTD:179897
WormBase:F58E10.3a InParanoid:Q9XUW5 OMA:YVLQEIT NextBio:907314
ArrayExpress:Q9XUW5 Uniprot:Q9XUW5
Length = 561
Score = 510 (184.6 bits), Expect = 7.2e-49, P = 7.2e-49
Identities = 122/367 (33%), Positives = 201/367 (54%)
Query: 43 YKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQ--HVPQG-GVRALIL 99
++ PT IQ + P+ +SG D++++A+TGSGKT AF++P L + + H +G G L+L
Sbjct: 149 FQKPTVIQSISWPIAMSGRDIISIAKTGSGKTLAFMLPALVHITKQAHRQRGEGPAVLVL 208
Query: 100 SPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLS 159
PTR+LA Q + + + L+++ L GG S Q +L + DI++ATPGRL+ L
Sbjct: 209 LPTRELAQQVQEVSIDFCHSLGLKMTCLFGGASKGPQARDLERGVDIVVATPGRLLDFLD 268
Query: 160 EVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKA 219
++K Y+V DEAD + MGF Q+ KI+GQ+ +RQTL+FSAT P + A
Sbjct: 269 N-GTTNMKKCSYLVLDEADRMLDMGFEPQIKKIIGQIRPDRQTLMFSATWPKEVRALASD 327
Query: 220 GLRDPHLVRL-DVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQ--TLIFVSTK 276
+D + + ++ + ++ L + K A L+ ++ HI + ++ T+IFV TK
Sbjct: 328 FQKDAAFLNVGSLELAANHNITQVVDILEEHAKQAKLMELLN-HIMNQKECKTIIFVETK 386
Query: 277 HHVEFLNVLFREEGLEPSVC-YGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL 335
+ L R +G P++C +GD +Q R + F+A KT ++ TDVAARG+D+ +
Sbjct: 387 RKADELTRAMRRDGW-PTLCIHGDKNQGERDWVLQEFKAGKTPIMLATDVAARGLDVDDI 445
Query: 336 DNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHLFLSKPIRAAPSE 395
VIN+D+P + +VHR+ ++F T + + DL L + + P
Sbjct: 446 KFVINYDYPNNSEDYVHRIGRTGRSDKKGTAYTFFTHTNASKAKDLLKVLDEAKQTVP-- 503
Query: 396 EEVLLDM 402
+ L DM
Sbjct: 504 -QALRDM 509
>RGD|1308990 [details] [associations]
symbol:Ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 10"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1308990
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CH473975 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000074980 CTD:1662 OrthoDB:EOG4BK536 OMA:ADKVIEP
IPI:IPI00869603 RefSeq:NP_001100290.1 UniGene:Rn.99481
Ensembl:ENSRNOT00000017683 GeneID:300710 KEGG:rno:300710
UCSC:RGD:1308990 NextBio:647348 Uniprot:D3ZBY5
Length = 874
Score = 513 (185.6 bits), Expect = 9.5e-49, Sum P(3) = 9.5e-49
Identities = 145/510 (28%), Positives = 251/510 (49%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F LS + ++ Y++ T IQ++T+ L L G DV+ A+TGSGKT AFLVP+L+
Sbjct: 71 FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEA 130
Query: 85 LN--QHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
L Q G+ LI+SPTR+LA QT + +++G+ D L++GG ++ + E +
Sbjct: 131 LYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-N 189
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
N +I++ TPGRL+ H+ E +++ +V DEAD + MGFA+ ++ I+ L + RQT
Sbjct: 190 NINILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPKKRQT 249
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKIS-P-DLKLAFFTLRQEEKHAALLYMIR 260
LLFSAT ++ + A+ L+DP V + K S P L+ + +K + L +R
Sbjct: 250 LLFSATQTKSVKDLARLSLKDPEYVWVHEKAKYSTPATLEQNYIICELHQKISVLFSFLR 309
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLF-R-EEGLEPSVCYGDMDQDARKIHV-SRFRARKT 317
H++ +++++F S+ V++L +F R G+ +G Q R++ V + F ++
Sbjct: 310 SHLT--KKSIVFFSSCKEVQYLYRVFCRLRPGISILALHG-RQQQMRRMEVYNEFVRKRA 366
Query: 318 MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVT-SEDMA 376
L TD+AARG+D P ++ V+ +D P ++HR + SE+
Sbjct: 367 AVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEEQG 426
Query: 377 YLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSD--- 433
+ L L P++ E L+D V +++ +A + + R + + +
Sbjct: 427 MVQQL-LQKKVPVKEIKINPEKLID---VQKRLESFLAQDQDLKERAQRCFVSYIRSVYL 482
Query: 434 -RVREIID-SSADLN----SLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFK 487
+ +E+ D + + SL R K + P+KE GK+ E + P
Sbjct: 483 MKDKEVFDVNKLPITEYALSLGLAVAPRIRFLQKMEKQPNKEL---GKNQVTEAIQPRAP 539
Query: 488 NVL--EGGELMALAFSERLKAFRPKQTILE 515
++ E E A FSE++ LE
Sbjct: 540 SLTSDEVEEFRAY-FSEKMSILHKSGKRLE 568
Score = 45 (20.9 bits), Expect = 9.5e-49, Sum P(3) = 9.5e-49
Identities = 24/133 (18%), Positives = 53/133 (39%)
Query: 632 DDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKT-ESGAKVKATKTGIYKKWKE 690
DD+GG+ K + K + K +++ A + + E A+ +A K ++ K
Sbjct: 717 DDTGGINLDKAKERLQEEDK-FDKEEYRKKIKAKHRERRLKEREARREANK----RQAKA 771
Query: 691 RSHKKVYLKGASNEGNAEETTSVPG-GRHLXXXXXXXXXXXXQQRSVPNAHVCSEIKDLD 749
R ++ +L + + + +++P +H + S H S+ K
Sbjct: 772 RDEEEAFLDWSDEDDGGFDPSTLPDPDKH---------RSSEESESEDTKHKMSDTKKKQ 822
Query: 750 QVRKERQKKADRI 762
++RK + D +
Sbjct: 823 EMRKRNNTEVDDV 835
Score = 42 (19.8 bits), Expect = 9.5e-49, Sum P(3) = 9.5e-49
Identities = 14/73 (19%), Positives = 34/73 (46%)
Query: 545 EKIINLVHQQRSSKSMEKEVEPEADSLMAKEIKE--THGSKRKAKTFKDEEYFISSVPTN 602
+K+ +++ + + ++P A SL + E++E + S++ + K + T
Sbjct: 515 QKMEKQPNKELGKNQVTEAIQPRAPSLTSDEVEEFRAYFSEKMSILHKSGKRLEE---TE 571
Query: 603 HHMEAGLSVRSDQ 615
H + +G S D+
Sbjct: 572 HSLASGESEEQDE 584
>SGD|S000005056 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase of the DEAD-box
protein family" species:4932 "Saccharomyces cerevisiae" [GO:0071042
"nuclear polyadenylation-dependent mRNA catabolic process"
evidence=IGI;IMP] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0008186 "RNA-dependent
ATPase activity" evidence=IMP;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;IPI] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005056 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0000184 EMBL:BK006947 GO:GO:0003723 EMBL:Z69382
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
OrthoDB:EOG47SWP6 EMBL:X52649 EMBL:Z71388 EMBL:M64991 PIR:S13757
RefSeq:NP_014287.3 RefSeq:NP_014296.4 ProteinModelPortal:P24783
SMR:P24783 DIP:DIP-2438N IntAct:P24783 MINT:MINT-636962
STRING:P24783 PaxDb:P24783 PeptideAtlas:P24783 EnsemblFungi:YNL112W
GeneID:855611 GeneID:855620 KEGG:sce:YNL103W KEGG:sce:YNL112W
CYGD:YNL112w GeneTree:ENSGT00660000095174 NextBio:979789
Genevestigator:P24783 GermOnline:YNL112W Uniprot:P24783
Length = 546
Score = 509 (184.2 bits), Expect = 9.7e-49, P = 9.7e-49
Identities = 120/355 (33%), Positives = 189/355 (53%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ V +K +G+ PT IQ + P+ LSG D+V +A TGSGKT ++ +P +
Sbjct: 115 FDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVH 174
Query: 85 LNQH---VPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
+N P G L+L+PTR+LA+Q + G + +R + + GG Q +L+
Sbjct: 175 INAQPLLAPGDGPIVLVLAPTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQIRDLS 234
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ +I+IATPGRL+ L E+ +LK V Y+V DEAD + MGF Q+ KI+ Q+ +RQ
Sbjct: 235 RGSEIVIATPGRLIDML-EIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 293
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRL-DVDTKISPDLKLAFFTLRQEEKHAAL-LYMI 259
TL++SAT P + + A L DP V++ ++ S ++ + EK L Y+
Sbjct: 294 TLMWSATWPKEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNKYLE 353
Query: 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319
++ +TLIF STK + + RE+G +GD DQ R + FR ++
Sbjct: 354 TASQDNEYKTLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRSPI 413
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSED 374
++ TDVAARGID+ ++ VIN+D P + +VHR+ SF T ++
Sbjct: 414 MVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQN 468
>UNIPROTKB|Q48PB7 [details] [associations]
symbol:PSPPH_0449 "ATP-dependent RNA helicase RhlE,
putative" species:264730 "Pseudomonas syringae pv. phaseolicola
1448A" [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000058 GenomeReviews:CP000058_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_272752.1 ProteinModelPortal:Q48PB7 GeneID:3558820
KEGG:psp:PSPPH_0449 PATRIC:19969930 OMA:DGDLMGF
ProtClustDB:CLSK865855 Uniprot:Q48PB7
Length = 625
Score = 492 (178.3 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
Identities = 117/374 (31%), Positives = 190/374 (50%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F SL LS + RAI+ GY PTP+Q++ +P +L G D++ A+TG+GKT F +P+L+R
Sbjct: 3 FASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILER 62
Query: 85 L---------NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMES 135
L +H P+ R L+L+PTR+LA Q + K R + + GG M
Sbjct: 63 LFPNGVPDKSQRHGPRQP-RVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMNP 121
Query: 136 QFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQ 195
Q + +++ D+++A PGRL+ L+ + L VE +V DEAD + MGF + K+L +
Sbjct: 122 QVQAMSRGVDVLVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180
Query: 196 LSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAAL 255
L RQ LLFSAT + + A L +P + + ++ F L K + L
Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLL 240
Query: 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRAR 315
++I + + +Q L+F TKH L + GL +G+ Q+AR ++ F+A
Sbjct: 241 AHLIT--VGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAG 298
Query: 316 KTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDM 375
++ TD+AARG+DI L +V+N++ P + +VHR+ S V ++
Sbjct: 299 DVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEE 358
Query: 376 AYLLDLHLFLSKPI 389
L + + I
Sbjct: 359 KLLKSIERMTKQKI 372
Score = 38 (18.4 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 472 RRGKDLPREGLHPMFKNVLEG 492
R + LPREG P + +G
Sbjct: 562 REDQPLPREGQEPAVRAPRDG 582
>FB|FBgn0003261 [details] [associations]
symbol:Rm62 "Rm62" species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0019730 "antimicrobial humoral response"
evidence=IMP] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE014297 GO:GO:0005524 GO:GO:0005875
GO:GO:0006417 GO:GO:0016246 GO:GO:0022008 GO:GO:0003729
GO:GO:0019730 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0005703 GO:GO:0000381 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 GeneTree:ENSGT00660000095174 EMBL:X52846
EMBL:BT001716 EMBL:BT011476 EMBL:BT015209 PIR:S11485
RefSeq:NP_001163528.1 RefSeq:NP_001189182.1 RefSeq:NP_524243.2
RefSeq:NP_731031.1 RefSeq:NP_731032.1 RefSeq:NP_731033.1
RefSeq:NP_731034.1 RefSeq:NP_731035.2 UniGene:Dm.1520
ProteinModelPortal:P19109 SMR:P19109 DIP:DIP-17867N IntAct:P19109
MINT:MINT-301207 STRING:P19109 PaxDb:P19109 PRIDE:P19109
EnsemblMetazoa:FBtr0078652 GeneID:40739 KEGG:dme:Dmel_CG10279
CTD:40739 FlyBase:FBgn0003261 InParanoid:P19109 OMA:HISNQPR
OrthoDB:EOG4QBZMP PhylomeDB:P19109 GenomeRNAi:40739 NextBio:820339
Bgee:P19109 GermOnline:CG10279 Uniprot:P19109
Length = 719
Score = 518 (187.4 bits), Expect = 1.1e-48, P = 1.1e-48
Identities = 121/357 (33%), Positives = 195/357 (54%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F ++L V + I+R+GYK PT IQ + P+ +SG++ V +A+TGSGKT +++P +
Sbjct: 283 FSEVHLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIVH 342
Query: 85 LNQHVP--QG-GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
+N P +G G AL+L+PTR+LA Q + E G + +R + + GG Q +L
Sbjct: 343 INNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQ 402
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ +I+IATPGRL+ LS +LK Y+V DEAD + MGF Q+ KI+ Q+ +RQ
Sbjct: 403 RGCEIVIATPGRLIDFLS-AGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 461
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRL-DVDTKISPDLKLAFFT---LRQEEKHAALLY 257
TL++SAT P + + A+ L + + + ++ + +++ +EEK LL
Sbjct: 462 TLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTLLS 521
Query: 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKT 317
I + S + +IFV TK V+ L R G+ +GD Q R + FR+ K+
Sbjct: 522 DIYDTSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKS 581
Query: 318 MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSED 374
L+ TDVAARG+D+ + VIN+D+P + ++HR+ F+F T +
Sbjct: 582 NILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNN 638
>UNIPROTKB|A7E307 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
CTD:10521 HOVERGEN:HBG015893 KO:K13178 OrthoDB:EOG4QRH3N
GO:GO:0072358 EMBL:DAAA02014661 EMBL:DAAA02014662 EMBL:BC151648
IPI:IPI00914517 RefSeq:NP_001095463.1 UniGene:Bt.91623
Ensembl:ENSBTAT00000037682 GeneID:514323 KEGG:bta:514323
InParanoid:A7E307 OMA:QQFPQPP NextBio:20871275 Uniprot:A7E307
Length = 650
Score = 508 (183.9 bits), Expect = 1.3e-48, P = 1.3e-48
Identities = 125/386 (32%), Positives = 209/386 (54%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F N V + + + PTPIQ + PL LSG D+V +A+TGSGKT A+L+P +
Sbjct: 94 FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVH 153
Query: 85 LNQ--HVPQG-GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
+N ++ +G G L+L+PTR+LA Q + + G+ + L+ + + GG Q +L
Sbjct: 154 INHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLE 213
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ +I IATPGRL+ L E +L+ Y+V DEAD + MGF Q+ KI+ Q+ +RQ
Sbjct: 214 RGVEICIATPGRLIDFL-ESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 272
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRL-DVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
TL++SAT P + + A+ LRD + + +++ + ++ + EK L+ ++
Sbjct: 273 TLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLME 332
Query: 261 EHISS-DQQTLIFVSTKHHVEFLNVLFREEGLEPSVC-YGDMDQDARKIHVSRFRARKTM 318
E ++ + +T+IFV TK + L R +G P++C +GD Q R ++ FR+ K
Sbjct: 333 EIMAEKENKTIIFVETKRRCDDLTRRMRRDGW-PAMCIHGDKSQPERDWVLNEFRSGKAP 391
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYL 378
LI TDVA+RG+D+ + VIN+D+P + +VHR+ ++F T ++
Sbjct: 392 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQA 451
Query: 379 LDLHLFLSKPIRAAPSEEEVLLDMDG 404
+L L + +A + L+D G
Sbjct: 452 RELIKVLEEANQAINPKLMQLVDHRG 477
>UNIPROTKB|Q3SZ65 [details] [associations]
symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
species:9913 "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 GeneTree:ENSGT00530000062880 KO:K03257
OrthoDB:EOG4640C1 EMBL:BC103106 IPI:IPI00711238
RefSeq:NP_001029216.1 UniGene:Bt.13925 ProteinModelPortal:Q3SZ65
SMR:Q3SZ65 STRING:Q3SZ65 PRIDE:Q3SZ65 Ensembl:ENSBTAT00000019596
GeneID:286819 KEGG:bta:286819 CTD:1974 InParanoid:Q3SZ65
OMA:TENDARQ NextBio:20806473 ArrayExpress:Q3SZ65 Uniprot:Q3SZ65
Length = 407
Score = 508 (183.9 bits), Expect = 1.3e-48, P = 1.3e-48
Identities = 115/370 (31%), Positives = 199/370 (53%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ +NL ++ R I G++ P+ IQ++ + + G DV+A A++G+GKTA F + +LQ+
Sbjct: 35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ 94
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL-AQN 143
L + +AL+L+PTR+LA Q K LG Y +GG ++ ++ ++L A+
Sbjct: 95 LEIEFKE--TQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEA 152
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
P I++ TPGR+ L+ +S K ++ V DEAD + GF +Q+++I +L+ + Q +
Sbjct: 153 PHIVVGTPGRVFDMLNR-RYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVV 211
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
L SAT+P+ + E K +RDP + + + +K + + +EE L + E +
Sbjct: 212 LLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETL 271
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+ Q +IF++T+ V++L S +GDMDQ R + + FR+ + LI T
Sbjct: 272 TITQ-AVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITT 330
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHL 383
D+ ARGID+ + VIN+D P + ++HR+ +FVT ED L D+
Sbjct: 331 DLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIET 390
Query: 384 FLSKPIRAAP 393
F + + P
Sbjct: 391 FYNTTVEEMP 400
>UNIPROTKB|E2R3J1 [details] [associations]
symbol:EIF4A2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 KO:K03257 CTD:1974 OMA:TENDARQ
EMBL:AAEX03017297 RefSeq:XP_860499.2 ProteinModelPortal:E2R3J1
SMR:E2R3J1 PRIDE:E2R3J1 Ensembl:ENSCAFT00000021683 GeneID:488118
KEGG:cfa:488118 NextBio:20861546 Uniprot:E2R3J1
Length = 407
Score = 508 (183.9 bits), Expect = 1.3e-48, P = 1.3e-48
Identities = 115/370 (31%), Positives = 199/370 (53%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ +NL ++ R I G++ P+ IQ++ + + G DV+A A++G+GKTA F + +LQ+
Sbjct: 35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ 94
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL-AQN 143
L + +AL+L+PTR+LA Q K LG Y +GG ++ ++ ++L A+
Sbjct: 95 LEIEFKE--TQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEA 152
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
P I++ TPGR+ L+ +S K ++ V DEAD + GF +Q+++I +L+ + Q +
Sbjct: 153 PHIVVGTPGRVFDMLNR-RYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVV 211
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
L SAT+P+ + E K +RDP + + + +K + + +EE L + E +
Sbjct: 212 LLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETL 271
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+ Q +IF++T+ V++L S +GDMDQ R + + FR+ + LI T
Sbjct: 272 TITQ-AVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITT 330
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHL 383
D+ ARGID+ + VIN+D P + ++HR+ +FVT ED L D+
Sbjct: 331 DLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIET 390
Query: 384 FLSKPIRAAP 393
F + + P
Sbjct: 391 FYNTTVEEMP 400
>UNIPROTKB|E2RJ60 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AAEX03007314
Ensembl:ENSCAFT00000037931 Uniprot:E2RJ60
Length = 650
Score = 508 (183.9 bits), Expect = 1.3e-48, P = 1.3e-48
Identities = 125/386 (32%), Positives = 209/386 (54%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F N V + + + PTPIQ + PL LSG D+V +A+TGSGKT A+L+P +
Sbjct: 94 FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVH 153
Query: 85 LNQ--HVPQG-GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
+N ++ +G G L+L+PTR+LA Q + + G+ + L+ + + GG Q +L
Sbjct: 154 INHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLE 213
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ +I IATPGRL+ L E +L+ Y+V DEAD + MGF Q+ KI+ Q+ +RQ
Sbjct: 214 RGVEICIATPGRLIDFL-ESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 272
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRL-DVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
TL++SAT P + + A+ LRD + + +++ + ++ + EK L+ ++
Sbjct: 273 TLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLME 332
Query: 261 EHISS-DQQTLIFVSTKHHVEFLNVLFREEGLEPSVC-YGDMDQDARKIHVSRFRARKTM 318
E ++ + +T+IFV TK + L R +G P++C +GD Q R ++ FR+ K
Sbjct: 333 EIMAEKENKTIIFVETKRRCDDLTRRMRRDGW-PAMCIHGDKSQPERDWVLNEFRSGKAP 391
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYL 378
LI TDVA+RG+D+ + VIN+D+P + +VHR+ ++F T ++
Sbjct: 392 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQA 451
Query: 379 LDLHLFLSKPIRAAPSEEEVLLDMDG 404
+L L + +A + L+D G
Sbjct: 452 RELIKVLEEANQAINPKLMQLVDHRG 477
>UNIPROTKB|Q14240 [details] [associations]
symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0004386
"helicase activity" evidence=TAS] [GO:0006446 "regulation of
translational initiation" evidence=TAS] [GO:0016281 "eukaryotic
translation initiation factor 4F complex" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0019221 "cytokine-mediated signaling
pathway" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 Reactome:REACT_21257 Reactome:REACT_17015
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 Reactome:REACT_6900
GO:GO:0019048 GO:GO:0006446 GO:GO:0016281 EMBL:CH471052
GO:GO:0019221 GO:GO:0004386 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000289
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG107989 Reactome:REACT_1762 KO:K03257
CTD:1974 OMA:TENDARQ EMBL:D30655 EMBL:BT009860 EMBL:AC112907
EMBL:BC012547 EMBL:BC013708 EMBL:BC015842 EMBL:BC048105
IPI:IPI00328328 IPI:IPI00409717 RefSeq:NP_001958.2
UniGene:Hs.518475 UniGene:Hs.599481 PDB:3BOR PDBsum:3BOR
ProteinModelPortal:Q14240 SMR:Q14240 IntAct:Q14240 MINT:MINT-202114
STRING:Q14240 PhosphoSite:Q14240 DMDM:45645183 PaxDb:Q14240
PRIDE:Q14240 DNASU:1974 Ensembl:ENST00000323963
Ensembl:ENST00000440191 GeneID:1974 KEGG:hsa:1974 UCSC:uc003fqs.3
UCSC:uc003fqu.3 GeneCards:GC03P186539 H-InvDB:HIX0003899
HGNC:HGNC:3284 HPA:CAB011690 MIM:601102 neXtProt:NX_Q14240
PharmGKB:PA27712 InParanoid:Q14240 PhylomeDB:Q14240 ChiTaRS:EIF4A2
EvolutionaryTrace:Q14240 GenomeRNAi:1974 NextBio:7991
PMAP-CutDB:Q14240 ArrayExpress:Q14240 Bgee:Q14240 CleanEx:HS_EIF4A2
Genevestigator:Q14240 GermOnline:ENSG00000156976 Uniprot:Q14240
Length = 407
Score = 508 (183.9 bits), Expect = 1.3e-48, P = 1.3e-48
Identities = 115/370 (31%), Positives = 199/370 (53%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ +NL ++ R I G++ P+ IQ++ + + G DV+A A++G+GKTA F + +LQ+
Sbjct: 35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ 94
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL-AQN 143
L + +AL+L+PTR+LA Q K LG Y +GG ++ ++ ++L A+
Sbjct: 95 LEIEFKE--TQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEA 152
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
P I++ TPGR+ L+ +S K ++ V DEAD + GF +Q+++I +L+ + Q +
Sbjct: 153 PHIVVGTPGRVFDMLNR-RYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVV 211
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
L SAT+P+ + E K +RDP + + + +K + + +EE L + E +
Sbjct: 212 LLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETL 271
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+ Q +IF++T+ V++L S +GDMDQ R + + FR+ + LI T
Sbjct: 272 TITQ-AVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITT 330
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHL 383
D+ ARGID+ + VIN+D P + ++HR+ +FVT ED L D+
Sbjct: 331 DLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIET 390
Query: 384 FLSKPIRAAP 393
F + + P
Sbjct: 391 FYNTTVEEMP 400
>UNIPROTKB|A6M930 [details] [associations]
symbol:EIF4A2 "Eukaryotic translation initiation factor 4A
isoform 2" species:9823 "Sus scrofa" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003743 "translation initiation factor activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 KO:K03257 CTD:1974 OMA:TENDARQ
EMBL:CU633961 EMBL:DQ351285 RefSeq:NP_001093665.1 UniGene:Ssc.10843
ProteinModelPortal:A6M930 SMR:A6M930 PRIDE:A6M930
Ensembl:ENSSSCT00000012915 GeneID:100101928 KEGG:ssc:100101928
Uniprot:A6M930
Length = 407
Score = 508 (183.9 bits), Expect = 1.3e-48, P = 1.3e-48
Identities = 115/370 (31%), Positives = 199/370 (53%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ +NL ++ R I G++ P+ IQ++ + + G DV+A A++G+GKTA F + +LQ+
Sbjct: 35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ 94
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL-AQN 143
L + +AL+L+PTR+LA Q K LG Y +GG ++ ++ ++L A+
Sbjct: 95 LEIEFKE--TQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEA 152
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
P I++ TPGR+ L+ +S K ++ V DEAD + GF +Q+++I +L+ + Q +
Sbjct: 153 PHIVVGTPGRVFDMLNR-RYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVV 211
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
L SAT+P+ + E K +RDP + + + +K + + +EE L + E +
Sbjct: 212 LLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETL 271
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+ Q +IF++T+ V++L S +GDMDQ R + + FR+ + LI T
Sbjct: 272 TITQ-AVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITT 330
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHL 383
D+ ARGID+ + VIN+D P + ++HR+ +FVT ED L D+
Sbjct: 331 DLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIET 390
Query: 384 FLSKPIRAAP 393
F + + P
Sbjct: 391 FYNTTVEEMP 400
>TIGR_CMR|VC_2564 [details] [associations]
symbol:VC_2564 "ATP-dependent RNA helicase DbpA"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
KO:K05591 ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
OMA:THEKSTI PIR:B82060 RefSeq:NP_232192.1 ProteinModelPortal:Q9KP15
DNASU:2615581 GeneID:2615581 KEGG:vch:VC2564 PATRIC:20084152
Uniprot:Q9KP15
Length = 460
Score = 508 (183.9 bits), Expect = 1.3e-48, P = 1.3e-48
Identities = 119/355 (33%), Positives = 193/355 (54%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F +LNL P + ++ G+ TPIQ +++P IL G DV+ +TGSGKTAAF + +L
Sbjct: 6 FAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSN 65
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEELAQN 143
LN V + V+AL+L PTR+LA Q + LGR ++++ L GG M Q L
Sbjct: 66 LN--VKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHG 123
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
I++ TPGR++ HLS+ + + L + +V DEAD + MGF E L I+ RQTL
Sbjct: 124 AHILVGTPGRILDHLSK-DRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTL 182
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR-QEEKHAALLYMIREH 262
LFSAT P+++ + A++ R+ +++++ T + ++ F+ + + AL ++ H
Sbjct: 183 LFSATYPASIEQIAQSVTRNALMIKVEA-THDTSSIRQYFYKVEGSAARDEALETLLLHH 241
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
+++F +TK V+ + + G +GDM+Q R + +F + L+
Sbjct: 242 --QPTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVA 299
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAY 377
TDVAARG+D+ LD V N+D P++ VHR+ FSF S++ +Y
Sbjct: 300 TDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFF-SDNESY 353
>MGI|MGI:1914290 [details] [associations]
symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 17"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0030331 "estrogen receptor binding"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0072358 "cardiovascular system
development" evidence=IMP] [GO:2001014 "regulation of skeletal
muscle cell differentiation" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914290
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0045944
GO:GO:0006351 GO:GO:0003723 GO:GO:0003713 GO:GO:0009791
GO:GO:0033148 GO:GO:0030331 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:10521 HOVERGEN:HBG015893 KO:K13178
ChiTaRS:DDX17 GO:GO:2001014 EMBL:AK039888 EMBL:BC062910
EMBL:BC096036 IPI:IPI00396797 IPI:IPI00405364 RefSeq:NP_001035277.1
RefSeq:NP_951061.1 RefSeq:NP_951062.1 UniGene:Mm.29644
UniGene:Mm.298199 ProteinModelPortal:Q501J6 SMR:Q501J6
IntAct:Q501J6 STRING:Q501J6 PhosphoSite:Q501J6
REPRODUCTION-2DPAGE:IPI00405364 PaxDb:Q501J6 PRIDE:Q501J6
GeneID:67040 KEGG:mmu:67040 UCSC:uc007wtq.1 UCSC:uc007wtt.1
InParanoid:Q501J6 OrthoDB:EOG4QRH3N NextBio:323386 Bgee:Q501J6
CleanEx:MM_DDX17 Genevestigator:Q501J6
GermOnline:ENSMUSG00000055065 GO:GO:0072358 Uniprot:Q501J6
Length = 650
Score = 508 (183.9 bits), Expect = 1.3e-48, P = 1.3e-48
Identities = 125/386 (32%), Positives = 209/386 (54%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F N V + + + PTPIQ + PL LSG D+V +A+TGSGKT A+L+P +
Sbjct: 94 FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVH 153
Query: 85 LNQ--HVPQG-GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
+N ++ +G G L+L+PTR+LA Q + + G+ + L+ + + GG Q +L
Sbjct: 154 INHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLE 213
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ +I IATPGRL+ L E +L+ Y+V DEAD + MGF Q+ KI+ Q+ +RQ
Sbjct: 214 RGVEICIATPGRLIDFL-ESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 272
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRL-DVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
TL++SAT P + + A+ LRD + + +++ + ++ + EK L+ ++
Sbjct: 273 TLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLME 332
Query: 261 EHISS-DQQTLIFVSTKHHVEFLNVLFREEGLEPSVC-YGDMDQDARKIHVSRFRARKTM 318
E ++ + +T+IFV TK + L R +G P++C +GD Q R ++ FR+ K
Sbjct: 333 EIMAEKENKTIIFVETKRRCDDLTRRMRRDGW-PAMCIHGDKSQPERDWVLNEFRSGKAP 391
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYL 378
LI TDVA+RG+D+ + VIN+D+P + +VHR+ ++F T ++
Sbjct: 392 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQA 451
Query: 379 LDLHLFLSKPIRAAPSEEEVLLDMDG 404
+L L + +A + L+D G
Sbjct: 452 RELIKVLEEANQAINPKLMQLVDHRG 477
>MGI|MGI:106906 [details] [associations]
symbol:Eif4a2 "eukaryotic translation initiation factor 4A2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0006413 "translational
initiation" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:106906 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 KO:K03257 OrthoDB:EOG4640C1 CTD:1974
OMA:TENDARQ EMBL:X12507 EMBL:X14422 EMBL:X56953 EMBL:AK076509
EMBL:U64706 IPI:IPI00400432 IPI:IPI00409918 PIR:S00985
RefSeq:NP_038534.2 UniGene:Mm.260084 ProteinModelPortal:P10630
SMR:P10630 IntAct:P10630 STRING:P10630 PhosphoSite:P10630
PaxDb:P10630 PRIDE:P10630 Ensembl:ENSMUST00000023599
Ensembl:ENSMUST00000115341 GeneID:13682 KEGG:mmu:13682
NextBio:284442 Bgee:P10630 CleanEx:MM_EIF4A2 Genevestigator:P10630
GermOnline:ENSMUSG00000022884 Uniprot:P10630
Length = 407
Score = 508 (183.9 bits), Expect = 1.3e-48, P = 1.3e-48
Identities = 115/370 (31%), Positives = 199/370 (53%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ +NL ++ R I G++ P+ IQ++ + + G DV+A A++G+GKTA F + +LQ+
Sbjct: 35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ 94
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL-AQN 143
L + +AL+L+PTR+LA Q K LG Y +GG ++ ++ ++L A+
Sbjct: 95 LEIEFKE--TQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEA 152
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
P I++ TPGR+ L+ +S K ++ V DEAD + GF +Q+++I +L+ + Q +
Sbjct: 153 PHIVVGTPGRVFDMLNR-RYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVV 211
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
L SAT+P+ + E K +RDP + + + +K + + +EE L + E +
Sbjct: 212 LLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETL 271
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+ Q +IF++T+ V++L S +GDMDQ R + + FR+ + LI T
Sbjct: 272 TITQ-AVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITT 330
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHL 383
D+ ARGID+ + VIN+D P + ++HR+ +FVT ED L D+
Sbjct: 331 DLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIET 390
Query: 384 FLSKPIRAAP 393
F + + P
Sbjct: 391 FYNTTVEEMP 400
>RGD|1309225 [details] [associations]
symbol:Eif4a2 "eukaryotic translation initiation factor 4A2"
species:10116 "Rattus norvegicus" [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1309225 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989 HSSP:P60842
KO:K03257 OrthoDB:EOG4640C1 CTD:1974 EMBL:BC085859 IPI:IPI00193595
RefSeq:NP_001008336.1 UniGene:Rn.143972 ProteinModelPortal:Q5RKI1
SMR:Q5RKI1 STRING:Q5RKI1 PhosphoSite:Q5RKI1
World-2DPAGE:0004:Q5RKI1 PRIDE:Q5RKI1 GeneID:303831 KEGG:rno:303831
UCSC:RGD:1309225 InParanoid:Q5RKI1 NextBio:652169
ArrayExpress:Q5RKI1 Genevestigator:Q5RKI1
GermOnline:ENSRNOG00000001815 Uniprot:Q5RKI1
Length = 407
Score = 508 (183.9 bits), Expect = 1.3e-48, P = 1.3e-48
Identities = 115/370 (31%), Positives = 199/370 (53%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ +NL ++ R I G++ P+ IQ++ + + G DV+A A++G+GKTA F + +LQ+
Sbjct: 35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ 94
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL-AQN 143
L + +AL+L+PTR+LA Q K LG Y +GG ++ ++ ++L A+
Sbjct: 95 LEIEFKE--TQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEA 152
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
P I++ TPGR+ L+ +S K ++ V DEAD + GF +Q+++I +L+ + Q +
Sbjct: 153 PHIVVGTPGRVFDMLNR-RYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVV 211
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
L SAT+P+ + E K +RDP + + + +K + + +EE L + E +
Sbjct: 212 LLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETL 271
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+ Q +IF++T+ V++L S +GDMDQ R + + FR+ + LI T
Sbjct: 272 TITQ-AVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITT 330
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHL 383
D+ ARGID+ + VIN+D P + ++HR+ +FVT ED L D+
Sbjct: 331 DLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIET 390
Query: 384 FLSKPIRAAP 393
F + + P
Sbjct: 391 FYNTTVEEMP 400
>UNIPROTKB|F8WFX2 [details] [associations]
symbol:Eif4a2 "Eukaryotic initiation factor 4A-II"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1309225 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00530000062880
OMA:TENDARQ IPI:IPI00193595 ProteinModelPortal:F8WFX2 PRIDE:F8WFX2
Ensembl:ENSRNOT00000002484 Uniprot:F8WFX2
Length = 408
Score = 508 (183.9 bits), Expect = 1.3e-48, P = 1.3e-48
Identities = 115/370 (31%), Positives = 199/370 (53%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ +NL ++ R I G++ P+ IQ++ + + G DV+A A++G+GKTA F + +LQ+
Sbjct: 36 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ 95
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL-AQN 143
L + +AL+L+PTR+LA Q K LG Y +GG ++ ++ ++L A+
Sbjct: 96 LEIEFKE--TQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEA 153
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
P I++ TPGR+ L+ +S K ++ V DEAD + GF +Q+++I +L+ + Q +
Sbjct: 154 PHIVVGTPGRVFDMLNR-RYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVV 212
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
L SAT+P+ + E K +RDP + + + +K + + +EE L + E +
Sbjct: 213 LLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETL 272
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+ Q +IF++T+ V++L S +GDMDQ R + + FR+ + LI T
Sbjct: 273 TITQ-AVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITT 331
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHL 383
D+ ARGID+ + VIN+D P + ++HR+ +FVT ED L D+
Sbjct: 332 DLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIET 391
Query: 384 FLSKPIRAAP 393
F + + P
Sbjct: 392 FYNTTVEEMP 401
>UNIPROTKB|I3LLD5 [details] [associations]
symbol:I3LLD5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 Ensembl:ENSSSCT00000032168 OMA:SKRERIM
Uniprot:I3LLD5
Length = 401
Score = 507 (183.5 bits), Expect = 1.7e-48, P = 1.7e-48
Identities = 117/370 (31%), Positives = 197/370 (53%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ +NLS ++ R I G++ P+ IQ++ + + G DV+A A++G+GKTA F + +LQ+
Sbjct: 34 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 93
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN- 143
+ + +AL+L+PTR+LA Q K LG Y +GG ++ ++ ++L
Sbjct: 94 IELDLK--ATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 151
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
P II+ TPGR+ L+ +S K ++ V DEAD + GF +Q++ I +L+ N Q +
Sbjct: 152 PHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVV 210
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
L SAT+PS + E K +RDP + L ++ ++ + + +EE L + E +
Sbjct: 211 LLSATMPSDVLEVTKKFMRDPIRIXLTLE-----GIRQFYINVEREEWKLDTLCDLYETL 265
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+ Q +IF++T+ V++L S +GDMDQ R + + FR+ + LI T
Sbjct: 266 TITQ-AVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITT 324
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHL 383
D+ ARGID+ + VIN+D P + ++HR+ + VT ED L D+
Sbjct: 325 DLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIET 384
Query: 384 FLSKPIRAAP 393
F + I P
Sbjct: 385 FYNTSIEEMP 394
>CGD|CAL0003204 [details] [associations]
symbol:DBP2 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0003204 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000245
EMBL:AACQ01000246 RefSeq:XP_710694.1 RefSeq:XP_710708.1
ProteinModelPortal:Q59LU0 PRIDE:Q59LU0 GeneID:3647692
GeneID:3647705 KEGG:cal:CaO19.171 KEGG:cal:CaO19.7804 KO:K12823
Uniprot:Q59LU0
Length = 562
Score = 506 (183.2 bits), Expect = 2.2e-48, P = 2.2e-48
Identities = 123/377 (32%), Positives = 196/377 (51%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ V + +K +G+ PTPIQ + P+ LSG D++ +A TGSGKT ++ +P +
Sbjct: 129 FDEAGFPDYVLQEVKDQGFPKPTPIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPSIVH 188
Query: 85 LNQHVPQ---G-GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
+N PQ G G L+L+PTR+LA+Q + G+ + +R + + GG Q +L
Sbjct: 189 INAQ-PQLQYGDGPIVLVLAPTRELAVQIQTECSKFGKSSRIRNTCVYGGAPKGPQIRDL 247
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
A+ +I IATPGRL+ L E +LK V Y+V DEAD + MGF Q+ KI+ Q+ +R
Sbjct: 248 ARGVEICIATPGRLIDML-EAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 306
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRL-DVDTKISPDLKLAFFTLRQEEKHAALLYMI 259
QTL++SAT P + + + L DP V + ++ S + + + K L+ +
Sbjct: 307 QTLMWSATWPKEVQQLTRDYLNDPIQVTIGSLELAASHTITQLVEVIDEFSKRDRLVKHL 366
Query: 260 REHISS-DQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
++ D + L+F STK + + R +G +GD +Q+ R + FR KT
Sbjct: 367 ESALNEKDNKILVFASTKRTCDEITTYLRSDGWPALAIHGDKEQNERDWVLDEFRKGKTS 426
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYL 378
++ TDVAARGID+ + +VIN+D P + +VHR+ SF T +
Sbjct: 427 IMVATDVAARGIDVKGITHVINYDMPGNIEDYVHRIGRTGRGGASGTAISFFTEGNSKLG 486
Query: 379 LDLHLFLSKPIRAAPSE 395
DL + + + P E
Sbjct: 487 GDLCKIMREANQTVPPE 503
>TAIR|locus:2176192 [details] [associations]
symbol:AT5G51280 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0000741 "karyogamy"
evidence=RCA] [GO:0009560 "embryo sac egg cell differentiation"
evidence=RCA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AB023044 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K13116
OMA:DICRYLC HOGENOM:HOG000268792 EMBL:AK226380 IPI:IPI00530020
RefSeq:NP_199941.1 UniGene:At.29686 ProteinModelPortal:Q9LU46
SMR:Q9LU46 PaxDb:Q9LU46 PRIDE:Q9LU46 DNASU:835202
EnsemblPlants:AT5G51280.1 GeneID:835202 KEGG:ath:AT5G51280
GeneFarm:1011 TAIR:At5g51280 InParanoid:Q9LU46 PhylomeDB:Q9LU46
ProtClustDB:CLSN2685494 Genevestigator:Q9LU46 GermOnline:AT5G51280
Uniprot:Q9LU46
Length = 591
Score = 504 (182.5 bits), Expect = 3.8e-48, P = 3.8e-48
Identities = 132/411 (32%), Positives = 214/411 (52%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPML-- 82
F+ + V +K KG PTPIQ + +P+IL+G D++ +A TGSGKT F++PM+
Sbjct: 148 FKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMI 207
Query: 83 ---QRLNQHVPQG-GVRALILSPTRDLALQTLKFTKEL------GRYTDLRISLLVGGDS 132
+ + + G G LI+ P+R+LA QT + ++ Y LR L +GG
Sbjct: 208 ALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGID 267
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
M SQ E + + I++ATPGRL L++ + MSL + Y+ DEAD L +GF + + ++
Sbjct: 268 MRSQLEVVKRGVHIVVATPGRLKDMLAK-KKMSLDACRYLTLDEADRLVDLGFEDDIREV 326
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
RQTLLFSAT+P+ + FA++ L P V + + D+ ++QE K
Sbjct: 327 FDHFKSQRQTLLFSATMPTKIQIFARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKI 386
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
LL +++ + LIF K V+ ++ +G+E +G DQ+ R+ +S F
Sbjct: 387 VYLLECLQK---TSPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDREYAISSF 443
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVT- 371
+A K L+ TDVA++G+D P + +VIN+D P + + +VHR+ +F+
Sbjct: 444 KAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINK 503
Query: 372 SEDMAYLLDL-HLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYG 421
++ LLDL HL R P VL +++ M + + IAN + G
Sbjct: 504 NQSETTLLDLKHLLQEAKQRIPP----VLAELNDPMEEAE-TIANASGVKG 549
>WB|WBGene00018007 [details] [associations]
symbol:F33D11.10 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0051301
"cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0018996 "molting
cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0018996 GO:GO:0003676
GO:GO:0000910 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00530000062880 GO:GO:0001703 KO:K13025 OMA:IFGKQPF
EMBL:FO080753 PIR:T32773 RefSeq:NP_491703.1
ProteinModelPortal:O44781 SMR:O44781 DIP:DIP-27243N IntAct:O44781
MINT:MINT-1047941 STRING:O44781 PaxDb:O44781
EnsemblMetazoa:F33D11.10.1 EnsemblMetazoa:F33D11.10.2 GeneID:172258
KEGG:cel:CELE_F33D11.10 UCSC:F33D11.10.1 CTD:172258
WormBase:F33D11.10 InParanoid:O44781 NextBio:874709 Uniprot:O44781
Length = 399
Score = 504 (182.5 bits), Expect = 3.8e-48, P = 3.8e-48
Identities = 117/369 (31%), Positives = 192/369 (52%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ + L ++ R I G++ P+ IQ++ +P IL DV+A A++G+GKTA F + +LQ
Sbjct: 28 FDKMGLREDLLRGIYAYGFEKPSAIQQRAVPAILKARDVIAQAQSGTGKTATFSISVLQS 87
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L+ V + +ALILSPTR+LA+Q K LG Y +++ +GG ++ +L
Sbjct: 88 LDTQVRE--TQALILSPTRELAVQIQKVVLALGDYMNVQCHACIGGTNLGEDIRKLDYGQ 145
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
++ TPGR+ + ++ ++++ +V DEAD + GF EQL+ I L Q +L
Sbjct: 146 HVVSGTPGRVFDMIRR-RNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVVL 204
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
SATLP + E + DP + + D +K F + +EE L + + ++
Sbjct: 205 LSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLIDLYDTLT 264
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
Q L F +T+ V++L +E S +GDM+Q R + FRA T LI TD
Sbjct: 265 ITQAVL-FCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLISTD 323
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHLF 384
V ARG+D+P + VIN+D P ++++HR+ +FV +D+ L D+ +
Sbjct: 324 VWARGLDVPQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKQDDVRILRDIEQY 383
Query: 385 LSKPIRAAP 393
S I P
Sbjct: 384 YSTQIDEMP 392
>WB|WBGene00022029 [details] [associations]
symbol:Y65B4A.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0018991 "oviposition" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0018996 "molting cycle, collagen and
cuticulin-based cuticle" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0018991 GO:GO:0002119
GO:GO:0018996 GO:GO:0040011 GO:GO:0003676 GO:GO:0042127
GO:GO:0040035 GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00530000062880 KO:K13025 OMA:EDWKFDT EMBL:FO081482
RefSeq:NP_490761.2 ProteinModelPortal:Q9BL61 SMR:Q9BL61
STRING:Q9BL61 PaxDb:Q9BL61 EnsemblMetazoa:Y65B4A.6 GeneID:190485
KEGG:cel:CELE_Y65B4A.6 UCSC:Y65B4A.6 CTD:190485 WormBase:Y65B4A.6
InParanoid:Q9BL61 NextBio:945920 Uniprot:Q9BL61
Length = 399
Score = 504 (182.5 bits), Expect = 3.8e-48, P = 3.8e-48
Identities = 117/369 (31%), Positives = 192/369 (52%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ + L ++ R I G++ P+ IQ++ +P IL DV+A A++G+GKTA F + +LQ
Sbjct: 28 FDKMGLREDLLRGIYAYGFEKPSAIQQRAIPAILKARDVIAQAQSGTGKTATFSISVLQS 87
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L+ V + +ALILSPTR+LA+Q K LG Y +++ +GG ++ +L
Sbjct: 88 LDTQVRE--TQALILSPTRELAVQIQKVVLALGDYMNVQCHACIGGTNLGEDIRKLDYGQ 145
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
++ TPGR+ + ++ ++++ +V DEAD + GF EQL+ I L Q +L
Sbjct: 146 HVVSGTPGRVFDMIRR-RNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVVL 204
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
SATLP + E + DP + + D +K F + +EE L + + ++
Sbjct: 205 LSATLPHEILEMTSKFMTDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLIDLYDTLT 264
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
Q L F +T+ V++L +E S +GDM+Q R + FRA T LI TD
Sbjct: 265 ITQAVL-FCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLISTD 323
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHLF 384
V ARG+D+P + VIN+D P ++++HR+ +FV +D+ L D+ +
Sbjct: 324 VWARGLDVPQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKQDDVRILRDIEQY 383
Query: 385 LSKPIRAAP 393
S I P
Sbjct: 384 YSTQIDEMP 392
>TIGR_CMR|CPS_3401 [details] [associations]
symbol:CPS_3401 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_270076.1 ProteinModelPortal:Q47YP4
STRING:Q47YP4 GeneID:3521057 KEGG:cps:CPS_3401 PATRIC:21469753
OMA:HLIKEHQ ProtClustDB:CLSK907013
BioCyc:CPSY167879:GI48-3430-MONOMER Uniprot:Q47YP4
Length = 432
Score = 503 (182.1 bits), Expect = 5.1e-48, P = 5.1e-48
Identities = 124/359 (34%), Positives = 184/359 (51%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L L + + Y PTPIQ + +P + +G D++A A TGSGKTA F +PMLQ+
Sbjct: 10 FTELGLITPLLARLAELEYHQPTPIQARAIPSVFAGRDLIAGANTGSGKTATFALPMLQK 69
Query: 85 LNQHVPQGG-------VRALILSPTRDLALQTLKFTKELGRYTDLRISLLV--GGDSMES 135
L + + G V L+L PTR+LA Q K + + I L GG S+
Sbjct: 70 LREDISSGSKNSKGNFVTGLVLVPTRELAKQVADSIKSYAVHFNGEIKTLAVFGGVSVNI 129
Query: 136 QFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQ 195
Q L DI++ATPGRL+ +S + L V+ +V DEAD + +GF E+L +L
Sbjct: 130 QMLALRGGVDILVATPGRLLDLISS-NAIKLDKVKTLVLDEADRMLSLGFTEELTALLAL 188
Query: 196 LSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAAL 255
+ +QTLLFSAT P + + L +P + + + + + L FT+ + EK A L
Sbjct: 189 TPKKKQTLLFSATFPEQVTTLTQELLNNP--IEIQLQSADASTLVQRVFTVNKGEKTAVL 246
Query: 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRAR 315
++I++ +Q LIFV+ KHH E L + G+ +V +GD Q R + F+A
Sbjct: 247 AHLIQQE--QWRQALIFVNAKHHCEHLAEKLAKRGITAAVFHGDKGQSERSRVLDGFKAG 304
Query: 316 KTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSED 374
LI TD+AARG+DI L VIN++ P P ++HR+ S + ED
Sbjct: 305 DIEVLIATDIAARGLDIEKLPVVINFNLPRSPSDYMHRIGRSGRAGEVGLAISLIDHED 363
>CGD|CAL0004182 [details] [associations]
symbol:HCA4 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004182 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 EMBL:AACQ01000023 EMBL:AACQ01000025
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_720233.1 RefSeq:XP_720463.1 ProteinModelPortal:Q5AF95
STRING:Q5AF95 GeneID:3637911 GeneID:3638091 KEGG:cal:CaO19.10227
KEGG:cal:CaO19.2712 KO:K14776 InterPro:IPR025313 Pfam:PF13959
Uniprot:Q5AF95
Length = 765
Score = 517 (187.1 bits), Expect = 6.3e-48, P = 6.3e-48
Identities = 119/338 (35%), Positives = 187/338 (55%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L ++ N + +K + T IQ+KT+P+ L G D++ ARTGSGKT AFL+P+++
Sbjct: 50 FSDLPITENTLKGLKEATFVSLTDIQKKTIPIALKGEDLMGTARTGSGKTLAFLIPVIES 109
Query: 85 L--NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE-ELA 141
L N+ G+ ALI+SPTR+LA+Q + ++G+Y L+ GG + QFE E
Sbjct: 110 LIRNKITEYDGLAALIVSPTRELAVQIFEVLTKIGKYNTFSAGLVTGGKDV--QFEKERV 167
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+I++ TPGR+ HL+E M +++ +V DEAD MGF +Q+ ILG L RQ
Sbjct: 168 SRMNILVGTPGRISQHLNEAVGMETSNLQVLVLDEADRCLDMGFKKQIDNILGHLPTTRQ 227
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKIS--PD-LKLAFFTLRQEEKHAALLYM 258
TLLFSAT ++ + A+ L +P+ + + D ++S P+ L+ + + +EK L
Sbjct: 228 TLLFSATQSESVNDLARLSLTNPNKIGVSSDQEVSATPESLEQYYVKVPLDEKLDVLWSF 287
Query: 259 IREHISSDQQTLIFVSTKHHVEFLNVLFR--EEGLEPSVCYGDMDQDARKIHVSRFRARK 316
I+ H+ S + L+F S+ V++ FR + G+ YG Q +R +F +
Sbjct: 288 IKSHLKS--KILVFFSSSKQVQYTYETFRTLQPGISLMKLYGRHKQTSRLETTMKFSQAQ 345
Query: 317 TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRV 354
L TD+ ARG+D P +D V+ D P +VHRV
Sbjct: 346 HACLFATDIVARGLDFPAIDWVVQVDCPEDAATYVHRV 383
>ZFIN|ZDB-GENE-030131-18 [details] [associations]
symbol:si:dkey-156n14.5 "si:dkey-156n14.5"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-18 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
KO:K13178 EMBL:CR626864 IPI:IPI00896916 RefSeq:XP_001923830.1
UniGene:Dr.75535 Ensembl:ENSDART00000129202 GeneID:556764
KEGG:dre:556764 NextBio:20881652 ArrayExpress:F1QBS1 Bgee:F1QBS1
Uniprot:F1QBS1
Length = 671
Score = 502 (181.8 bits), Expect = 6.6e-48, P = 6.6e-48
Identities = 119/363 (32%), Positives = 200/363 (55%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F V + ++ +K PT IQ + PL LSG D+V +A+TGSGKT A+L+P +
Sbjct: 97 FHQAQFPQYVMDVLLQQNFKEPTAIQAQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVH 156
Query: 85 LNQ--HVPQG-GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
+N ++ +G G L+L+PTR+LA Q + + G+ + ++ + + GG Q +L
Sbjct: 157 INHQPYLERGDGPICLVLAPTRELAQQVQQVAFDYGKSSRIKSTCVYGGAPKGPQIRDLE 216
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ +I IATPGRL+ L EV +L+ Y+V DEAD + MGF Q+ KI+ Q+ +RQ
Sbjct: 217 RGVEICIATPGRLIDFL-EVGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 275
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLD-VDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
TL++SAT P + + A+ L+D + + ++ + ++ + EK L+ ++
Sbjct: 276 TLMWSATWPKEVRQLAEDFLQDYVQINIGALELSANHNILQIVDVCMENEKDNKLIQLME 335
Query: 261 EHISS-DQQTLIFVSTKHHVEFLNVLFREEGLEPSVC-YGDMDQDARKIHVSRFRARKTM 318
E ++ + +T+IFV TK + L R +G P++C +GD Q R ++ FR+ K
Sbjct: 336 EIMAEKENKTIIFVETKKRCDELTRRMRRDGW-PAMCIHGDKSQPERDWVLTEFRSGKAP 394
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYL 378
LI TDVA+RG+D+ + VIN+D+P + +VHR+ ++F T ++
Sbjct: 395 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLRQA 454
Query: 379 LDL 381
DL
Sbjct: 455 RDL 457
>DICTYBASE|DDB_G0282741 [details] [associations]
symbol:ddx18 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0282741 GO:GO:0005524
GO:GO:0005730 EMBL:AAFI02000047 GenomeReviews:CM000152_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 InterPro:IPR025313 Pfam:PF13959
RefSeq:XP_640236.1 ProteinModelPortal:Q54S03 STRING:Q54S03
EnsemblProtists:DDB0234194 GeneID:8623775 KEGG:ddi:DDB_G0282741
KO:K13179 OMA:KDGYRSY Uniprot:Q54S03
Length = 602
Score = 500 (181.1 bits), Expect = 1.1e-47, P = 1.1e-47
Identities = 127/435 (29%), Positives = 230/435 (52%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F +L + N ++I+ G+K TPIQ K++ +L G D++ ARTGSGKT AFL+P ++
Sbjct: 121 FSNLPIEENTKKSIEEMGFKKMTPIQAKSILPLLEGKDLLGAARTGSGKTLAFLIPAIEV 180
Query: 85 L--NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
L + P+ G +I+SPTR+LALQ +EL +Y +++GG S + + E L +
Sbjct: 181 LVKSNFKPRNGTGVIIISPTRELALQIYGVARELMKYHTQTHGIVIGGASKKPEEERLEK 240
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
++++ATPGRL+ HL + K+++ ++ DEAD + +GF E++H+I+ ++ + RQT
Sbjct: 241 GVNLLVATPGRLLDHLQNTKGFITKNLKCLIIDEADRILEVGFEEEMHQIIKKVPKTRQT 300
Query: 203 LLFSATLPSALAEFAKAGLRD-PHLVRLDVDTKISP--DLKLAFFTLRQEEKHAALLYMI 259
+LFSAT + + AK L + P V +D + +IS L+ + E + L +
Sbjct: 301 MLFSATQTRKVDDIAKVSLNNSPVYVGVDDEREISTVEGLEQGYVVCPSERRFLLLYTFL 360
Query: 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319
++++S ++ ++F+S+ + V++ L + +G Q R F +
Sbjct: 361 KKNLS--KKIIVFLSSCNAVKYTAELLNYIDIPVLELHGRQKQQKRTNTFYEFVNAEKGI 418
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXX-XFSFVTSEDMAYL 378
LI TDVAARG+DIP +D +I +D P PK ++HRV F+ +++ +L
Sbjct: 419 LICTDVAARGLDIPSVDWIIQYDPPDDPKEYIHRVGRTARGVGKKGRALLFLLPKELGFL 478
Query: 379 LDLHLFLSK-PIRAAPSEEEVLLDMDGVMSKI-DQAIANGETIYGRFPQTVIDLVSDRVR 436
+L L+K P+ + + ++ + K+ Q + + + S ++
Sbjct: 479 K--YLKLAKVPLNEYEFPKSKIANVQDQLEKVVSQNFYLYNSARDAYKAYICAYASHSLK 536
Query: 437 EIIDSSA-DLNSLQR 450
+I D +A DL + +
Sbjct: 537 DIFDVNALDLQCVAK 551
>UNIPROTKB|F1SQ03 [details] [associations]
symbol:LOC100524536 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:GLKSICI EMBL:CU927956 RefSeq:XP_003135023.1
ProteinModelPortal:F1SQ03 Ensembl:ENSSSCT00000013311
GeneID:100524536 Uniprot:F1SQ03
Length = 630
Score = 500 (181.1 bits), Expect = 1.1e-47, P = 1.1e-47
Identities = 116/368 (31%), Positives = 202/368 (54%)
Query: 32 PNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLN-QHVP 90
P + ++IK+ G++ PTPIQ + P++L G D++ +A+TG+GKT ++L+P LN Q V
Sbjct: 233 PELMKSIKKAGFQKPTPIQSQAWPIVLQGIDLIGIAQTGTGKTLSYLMPGFIHLNSQPVS 292
Query: 91 QG---GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDII 147
+G G L+L+PTR+LALQ + Y L+ + GG + + Q +++ + DII
Sbjct: 293 RGKRNGPGMLVLTPTRELALQVGAECSKYS-YKGLKSVCIYGGGNRKGQIQDIMKGVDII 351
Query: 148 IATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSA 207
IATPGRL + L ++L+S+ Y+V DEAD + +GF Q+ KIL + +RQT++ SA
Sbjct: 352 IATPGRL-NDLQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKILLDVRPDRQTIMTSA 410
Query: 208 TLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQ 267
T P + + A + L++P LV + ++ D + EE+ +L + +S
Sbjct: 411 TWPDTIRQLAHSYLKEPMLVYVGTLDLVAVDTVKQNIIITTEEEKRSLFQEFLQSLSPKD 470
Query: 268 QTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAA 327
+ ++FVS K + L+ +G+ +GD +Q R+ + F+ K LI TD+A+
Sbjct: 471 KVIVFVSRKLIADDLSSDLSIQGIPVQSLHGDREQSDRERALDDFKTGKVKILIATDLAS 530
Query: 328 RGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHLFLSK 387
RG+D+ + +V N++FP + +VHRV + +T +D +L L +
Sbjct: 531 RGLDVSDVTHVFNYNFPRNIEEYVHRVGRTGRAGKMGESVTLMTQDDWKVAGELIEILQR 590
Query: 388 PIRAAPSE 395
++ P +
Sbjct: 591 ANQSIPED 598
>UNIPROTKB|I3LHW0 [details] [associations]
symbol:I3LHW0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 Ensembl:ENSSSCT00000032137 OMA:FESQIMK
Uniprot:I3LHW0
Length = 621
Score = 500 (181.1 bits), Expect = 1.1e-47, P = 1.1e-47
Identities = 116/368 (31%), Positives = 202/368 (54%)
Query: 32 PNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLN-QHVP 90
P + ++IK+ G++ PTPIQ + P++L G D++ +A+TG+GKT ++L+P LN Q V
Sbjct: 224 PELMKSIKKAGFQKPTPIQSQAWPIVLQGIDLIGIAQTGTGKTLSYLMPGFIHLNSQPVS 283
Query: 91 QG---GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDII 147
+G G L+L+PTR+LALQ + Y L+ + GG + + Q +++ + DII
Sbjct: 284 RGKRNGPGMLVLTPTRELALQVGAECSKYS-YKGLKSVCIYGGGNRKGQIQDIMKGVDII 342
Query: 148 IATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSA 207
IATPGRL + L ++L+S+ Y+V DEAD + +GF Q+ KIL + +RQT++ SA
Sbjct: 343 IATPGRL-NDLQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKILLDVRPDRQTIMTSA 401
Query: 208 TLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQ 267
T P + + A + L++P LV + ++ D + EE+ +L + +S
Sbjct: 402 TWPDTIRQLAHSYLKEPMLVYVGTLDLVAVDTVKQNIIITTEEEKRSLFQEFLQSLSPKD 461
Query: 268 QTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAA 327
+ ++FVS K + L+ +G+ +GD +Q R+ + F+ K LI TD+A+
Sbjct: 462 KVIVFVSRKLIADDLSSDLSIQGIPVQSLHGDREQSDRERALDDFKTGKVKILIATDLAS 521
Query: 328 RGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHLFLSK 387
RG+D+ + +V N++FP + +VHRV + +T +D +L L +
Sbjct: 522 RGLDVSDVTHVFNYNFPRNIEEYVHRVGRTGRAGKMGESVTLMTQDDWKVAGELIEILQR 581
Query: 388 PIRAAPSE 395
++ P +
Sbjct: 582 ANQSIPED 589
>TIGR_CMR|CPS_4097 [details] [associations]
symbol:CPS_4097 "ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K05590
ProtClustDB:PRK11192 RefSeq:YP_270752.2 ProteinModelPortal:Q47WS0
STRING:Q47WS0 PRIDE:Q47WS0 GeneID:3520098 KEGG:cps:CPS_4097
PATRIC:21471063 OMA:YLDKGHF BioCyc:CPSY167879:GI48-4110-MONOMER
Uniprot:Q47WS0
Length = 430
Score = 500 (181.1 bits), Expect = 1.1e-47, P = 1.1e-47
Identities = 121/359 (33%), Positives = 194/359 (54%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE +L + +I + GY PT IQ +P + G DV+A A TG+GKTAAFL+P+ Q
Sbjct: 15 FEQFDLDSELLASINKIGYTKPTSIQELVIPQAMVGKDVLASAPTGTGKTAAFLLPIAQH 74
Query: 85 LNQH--VPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
L + G R LIL+PTR+LA+Q + +++L T ++ ++ GG + S + L
Sbjct: 75 LLDYPRTKPGFPRVLILTPTRELAIQIGEDSEQLTELTKIKTGVITGGVNYGSHADILTS 134
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
DI++ATPGRL+ ++ E E + +E +V DEAD + +GF+E +++I+ + +QT
Sbjct: 135 TTDILVATPGRLLEYI-ENEQFDAREIEILVLDEADRMLDLGFSETINRIVAEARWRKQT 193
Query: 203 LLFSATLPSALAE-FAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
+LFSATL S + FA+ L +P + K + + L + H L +
Sbjct: 194 MLFSATLESPGVQLFAEEVLNEPVFLESKPSRKEKAVIH-QWLHLADDANHKLNLLVNTL 252
Query: 262 HISSDQQTLIFVSTKHHVEFLN-VLFREEGLEPSVCY-GDMDQDARKIHVSRFRARKTMF 319
++T++F + + V++L+ L+ EE P V G M QD R + RF+ +
Sbjct: 253 KQEGVERTVVFANKRETVQYLSGKLYAEE--LPCVWLEGKMPQDKRNKAIERFKKGEVKV 310
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYL 378
L+ TDVAARG+DI + +VIN+D P K I++HR+ S V + DM +
Sbjct: 311 LVATDVAARGLDIDDISHVINFDMPRKVDIYIHRIGRTGRAGKKGTAISLVEAHDMGVI 369
>UNIPROTKB|Q7L014 [details] [associations]
symbol:DDX46 "Probable ATP-dependent RNA helicase DDX46"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0015030 "Cajal body" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0016607 GO:GO:0006397 GO:GO:0003723
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K12811 EMBL:AF106680 EMBL:AB018344 EMBL:BC012304 EMBL:BK000565
IPI:IPI00329791 RefSeq:NP_055644.2 UniGene:Hs.406549
ProteinModelPortal:Q7L014 SMR:Q7L014 IntAct:Q7L014
MINT:MINT-3002486 STRING:Q7L014 PhosphoSite:Q7L014 DMDM:116241326
PaxDb:Q7L014 PeptideAtlas:Q7L014 PRIDE:Q7L014
Ensembl:ENST00000354283 Ensembl:ENST00000452510 GeneID:9879
KEGG:hsa:9879 UCSC:uc003kzw.3 CTD:9879 GeneCards:GC05P134094
HGNC:HGNC:18681 HPA:HPA036554 neXtProt:NX_Q7L014
PharmGKB:PA134894452 HOGENOM:HOG000007229 HOVERGEN:HBG081426
InParanoid:Q7L014 OrthoDB:EOG441Q9T ChiTaRS:DDX46 GenomeRNAi:9879
NextBio:37233 PMAP-CutDB:Q7L014 ArrayExpress:Q7L014 Bgee:Q7L014
CleanEx:HS_DDX46 Genevestigator:Q7L014 GermOnline:ENSG00000145833
Uniprot:Q7L014
Length = 1031
Score = 519 (187.8 bits), Expect = 1.2e-47, Sum P(2) = 1.2e-47
Identities = 124/376 (32%), Positives = 203/376 (53%)
Query: 30 LSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRL--NQ 87
+S + ++K+ GY+ PTPIQ + +P I+SG D++ +A+TGSGKT AFL+PM + + +
Sbjct: 379 ISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQR 438
Query: 88 HVPQG-GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDI 146
+ +G G A+I++PTR+LALQ K K+ + LR+ + GG + Q EL + +I
Sbjct: 439 SLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEI 498
Query: 147 IIATPGRLMHHLSEVEDM--SLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
I+ TPGR++ L+ +L+ V YVV DEAD +F MGF Q+ +I+ + +RQT++
Sbjct: 499 IVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVM 558
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT P A+ A+ L P V++ + + D++ + +E+K LL ++ H
Sbjct: 559 FSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLG-HYQ 617
Query: 265 SDQQTLIFVSTKHHVE-FLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+IFV + H + L L R S+ +G +DQ R ++ F+ L+ T
Sbjct: 618 ESGSVIIFVDKQEHADGLLKDLMRASYPCMSL-HGGIDQYDRDSIINDFKNGTCKLLVAT 676
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHL 383
VAARG+D+ L V+N+ P + +VHR ++F+T + Y D+
Sbjct: 677 SVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIK 736
Query: 384 FLSKPIRAAPSEEEVL 399
L A P + E L
Sbjct: 737 ALELSGTAVPPDLEKL 752
Score = 41 (19.5 bits), Expect = 1.2e-47, Sum P(2) = 1.2e-47
Identities = 12/54 (22%), Positives = 23/54 (42%)
Query: 660 ERVSASGKVVKTESGAKVKATKTGIYKKWKERSHKKVYLKGASNEGNAEETTSV 713
++ A GK++K SG K K ++ KK+ + + +E +V
Sbjct: 758 DQQKAEGKIIKKSSGFSGKGFKFDETEQALANERKKLQKAALGLQDSDDEDAAV 811
>UNIPROTKB|F1MX40 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:DAAA02020348
EMBL:DAAA02020349 IPI:IPI00703383 Ensembl:ENSBTAT00000028682
Uniprot:F1MX40
Length = 1032
Score = 519 (187.8 bits), Expect = 1.2e-47, Sum P(2) = 1.2e-47
Identities = 124/376 (32%), Positives = 203/376 (53%)
Query: 30 LSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRL--NQ 87
+S + ++K+ GY+ PTPIQ + +P I+SG D++ +A+TGSGKT AFL+PM + + +
Sbjct: 379 ISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQR 438
Query: 88 HVPQG-GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDI 146
+ +G G A+I++PTR+LALQ K K+ + LR+ + GG + Q EL + +I
Sbjct: 439 SLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEI 498
Query: 147 IIATPGRLMHHLSEVEDM--SLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
I+ TPGR++ L+ +L+ V YVV DEAD +F MGF Q+ +I+ + +RQT++
Sbjct: 499 IVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVM 558
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT P A+ A+ L P V++ + + D++ + +E+K LL ++ H
Sbjct: 559 FSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLG-HYQ 617
Query: 265 SDQQTLIFVSTKHHVE-FLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+IFV + H + L L R S+ +G +DQ R ++ F+ L+ T
Sbjct: 618 ESGSVIIFVDKQEHADGLLKDLMRASYPCMSL-HGGIDQYDRDSIINDFKNGTCKLLVAT 676
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHL 383
VAARG+D+ L V+N+ P + +VHR ++F+T + Y D+
Sbjct: 677 SVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIK 736
Query: 384 FLSKPIRAAPSEEEVL 399
L A P + E L
Sbjct: 737 ALELSGTAVPPDLEKL 752
Score = 41 (19.5 bits), Expect = 1.2e-47, Sum P(2) = 1.2e-47
Identities = 12/54 (22%), Positives = 23/54 (42%)
Query: 660 ERVSASGKVVKTESGAKVKATKTGIYKKWKERSHKKVYLKGASNEGNAEETTSV 713
++ A GK++K SG K K ++ KK+ + + +E +V
Sbjct: 758 DQQKAEGKIIKKSSGFSGKGFKFDETEQALANERKKLQKAALGLQDSDDEDAAV 811
>UNIPROTKB|F1PK90 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AAEX03007786
Ensembl:ENSCAFT00000001619 Uniprot:F1PK90
Length = 1032
Score = 519 (187.8 bits), Expect = 1.2e-47, Sum P(2) = 1.2e-47
Identities = 124/376 (32%), Positives = 203/376 (53%)
Query: 30 LSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRL--NQ 87
+S + ++K+ GY+ PTPIQ + +P I+SG D++ +A+TGSGKT AFL+PM + + +
Sbjct: 379 ISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQR 438
Query: 88 HVPQG-GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDI 146
+ +G G A+I++PTR+LALQ K K+ + LR+ + GG + Q EL + +I
Sbjct: 439 SLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEI 498
Query: 147 IIATPGRLMHHLSEVEDM--SLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
I+ TPGR++ L+ +L+ V YVV DEAD +F MGF Q+ +I+ + +RQT++
Sbjct: 499 IVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVM 558
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT P A+ A+ L P V++ + + D++ + +E+K LL ++ H
Sbjct: 559 FSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLG-HYQ 617
Query: 265 SDQQTLIFVSTKHHVE-FLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+IFV + H + L L R S+ +G +DQ R ++ F+ L+ T
Sbjct: 618 ESGSVIIFVDKQEHADGLLKDLMRASYPCMSL-HGGIDQYDRDSIINDFKNGTCKLLVAT 676
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHL 383
VAARG+D+ L V+N+ P + +VHR ++F+T + Y D+
Sbjct: 677 SVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIK 736
Query: 384 FLSKPIRAAPSEEEVL 399
L A P + E L
Sbjct: 737 ALELSGTAVPPDLEKL 752
Score = 41 (19.5 bits), Expect = 1.2e-47, Sum P(2) = 1.2e-47
Identities = 12/54 (22%), Positives = 23/54 (42%)
Query: 660 ERVSASGKVVKTESGAKVKATKTGIYKKWKERSHKKVYLKGASNEGNAEETTSV 713
++ A GK++K SG K K ++ KK+ + + +E +V
Sbjct: 758 DQQKAEGKIIKKSSGFSGKGFKFDETEQALANERKKLQKAALGLQDSDDEDAAV 811
>UNIPROTKB|I3LR20 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:FP312757
Ensembl:ENSSSCT00000027801 Uniprot:I3LR20
Length = 1032
Score = 519 (187.8 bits), Expect = 1.2e-47, Sum P(2) = 1.2e-47
Identities = 124/376 (32%), Positives = 203/376 (53%)
Query: 30 LSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRL--NQ 87
+S + ++K+ GY+ PTPIQ + +P I+SG D++ +A+TGSGKT AFL+PM + + +
Sbjct: 379 ISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQR 438
Query: 88 HVPQG-GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDI 146
+ +G G A+I++PTR+LALQ K K+ + LR+ + GG + Q EL + +I
Sbjct: 439 SLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEI 498
Query: 147 IIATPGRLMHHLSEVEDM--SLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
I+ TPGR++ L+ +L+ V YVV DEAD +F MGF Q+ +I+ + +RQT++
Sbjct: 499 IVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVM 558
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT P A+ A+ L P V++ + + D++ + +E+K LL ++ H
Sbjct: 559 FSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLG-HYQ 617
Query: 265 SDQQTLIFVSTKHHVE-FLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+IFV + H + L L R S+ +G +DQ R ++ F+ L+ T
Sbjct: 618 ESGSVIIFVDKQEHADGLLKDLMRASYPCMSL-HGGIDQYDRDSIINDFKNGTCKLLVAT 676
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHL 383
VAARG+D+ L V+N+ P + +VHR ++F+T + Y D+
Sbjct: 677 SVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIK 736
Query: 384 FLSKPIRAAPSEEEVL 399
L A P + E L
Sbjct: 737 ALELSGTAVPPDLEKL 752
Score = 41 (19.5 bits), Expect = 1.2e-47, Sum P(2) = 1.2e-47
Identities = 12/54 (22%), Positives = 23/54 (42%)
Query: 660 ERVSASGKVVKTESGAKVKATKTGIYKKWKERSHKKVYLKGASNEGNAEETTSV 713
++ A GK++K SG K K ++ KK+ + + +E +V
Sbjct: 758 DQQKAEGKIIKKSSGFSGKGFKFDETEQALANERKKLQKAALGLQDSDDEDAAV 811
>MGI|MGI:1920895 [details] [associations]
symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1920895
GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
OrthoDB:EOG441Q9T ChiTaRS:DDX46 EMBL:AK129220 EMBL:BC026492
EMBL:BC092240 IPI:IPI00468896 IPI:IPI00660556 RefSeq:NP_666087.3
UniGene:Mm.202725 ProteinModelPortal:Q569Z5 SMR:Q569Z5
STRING:Q569Z5 PhosphoSite:Q569Z5 PaxDb:Q569Z5 PRIDE:Q569Z5
Ensembl:ENSMUST00000172272 GeneID:212880 KEGG:mmu:212880
UCSC:uc011yzx.1 InParanoid:Q569Z5 OMA:IEEENKF NextBio:373723
Bgee:Q569Z5 CleanEx:MM_DDX46 Genevestigator:Q569Z5
GermOnline:ENSMUSG00000021500 Uniprot:Q569Z5
Length = 1032
Score = 519 (187.8 bits), Expect = 1.2e-47, Sum P(2) = 1.2e-47
Identities = 124/376 (32%), Positives = 203/376 (53%)
Query: 30 LSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRL--NQ 87
+S + ++K+ GY+ PTPIQ + +P I+SG D++ +A+TGSGKT AFL+PM + + +
Sbjct: 379 ISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQR 438
Query: 88 HVPQG-GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDI 146
+ +G G A+I++PTR+LALQ K K+ + LR+ + GG + Q EL + +I
Sbjct: 439 SLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEI 498
Query: 147 IIATPGRLMHHLSEVEDM--SLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
I+ TPGR++ L+ +L+ V YVV DEAD +F MGF Q+ +I+ + +RQT++
Sbjct: 499 IVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVM 558
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT P A+ A+ L P V++ + + D++ + +E+K LL ++ H
Sbjct: 559 FSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLG-HYQ 617
Query: 265 SDQQTLIFVSTKHHVE-FLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+IFV + H + L L R S+ +G +DQ R ++ F+ L+ T
Sbjct: 618 ESGSVIIFVDKQEHADGLLKDLMRASYPCMSL-HGGIDQYDRDSIINDFKNGTCKLLVAT 676
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHL 383
VAARG+D+ L V+N+ P + +VHR ++F+T + Y D+
Sbjct: 677 SVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIK 736
Query: 384 FLSKPIRAAPSEEEVL 399
L A P + E L
Sbjct: 737 ALELSGTAVPPDLEKL 752
Score = 41 (19.5 bits), Expect = 1.2e-47, Sum P(2) = 1.2e-47
Identities = 12/54 (22%), Positives = 23/54 (42%)
Query: 660 ERVSASGKVVKTESGAKVKATKTGIYKKWKERSHKKVYLKGASNEGNAEETTSV 713
++ A GK++K SG K K ++ KK+ + + +E +V
Sbjct: 758 DQQKAEGKIIKKSSGFSGKGFKFDETEQALANERKKLQKAALGLQDSDDEDAAV 811
>RGD|708480 [details] [associations]
symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0015030 "Cajal body" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:708480
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0003723 GO:GO:0015030
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 KO:K12811 CTD:9879
HOGENOM:HOG000007229 HOVERGEN:HBG081426 OrthoDB:EOG441Q9T
EMBL:U25746 EMBL:BC107590 IPI:IPI00208266 PIR:A57514
RefSeq:NP_620798.1 UniGene:Rn.3436 ProteinModelPortal:Q62780
STRING:Q62780 PhosphoSite:Q62780 PRIDE:Q62780
Ensembl:ENSRNOT00000029885 GeneID:245957 KEGG:rno:245957
UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
ArrayExpress:Q62780 Genevestigator:Q62780
GermOnline:ENSRNOG00000021637 Uniprot:Q62780
Length = 1032
Score = 519 (187.8 bits), Expect = 1.2e-47, Sum P(2) = 1.2e-47
Identities = 124/376 (32%), Positives = 203/376 (53%)
Query: 30 LSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRL--NQ 87
+S + ++K+ GY+ PTPIQ + +P I+SG D++ +A+TGSGKT AFL+PM + + +
Sbjct: 379 ISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQR 438
Query: 88 HVPQG-GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDI 146
+ +G G A+I++PTR+LALQ K K+ + LR+ + GG + Q EL + +I
Sbjct: 439 SLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEI 498
Query: 147 IIATPGRLMHHLSEVEDM--SLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
I+ TPGR++ L+ +L+ V YVV DEAD +F MGF Q+ +I+ + +RQT++
Sbjct: 499 IVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVM 558
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT P A+ A+ L P V++ + + D++ + +E+K LL ++ H
Sbjct: 559 FSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLG-HYQ 617
Query: 265 SDQQTLIFVSTKHHVE-FLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+IFV + H + L L R S+ +G +DQ R ++ F+ L+ T
Sbjct: 618 ESGSVIIFVDKQEHADGLLKDLMRASYPCMSL-HGGIDQYDRDSIINDFKNGTCKLLVAT 676
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHL 383
VAARG+D+ L V+N+ P + +VHR ++F+T + Y D+
Sbjct: 677 SVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIK 736
Query: 384 FLSKPIRAAPSEEEVL 399
L A P + E L
Sbjct: 737 ALELSGTAVPPDLEKL 752
Score = 41 (19.5 bits), Expect = 1.2e-47, Sum P(2) = 1.2e-47
Identities = 12/54 (22%), Positives = 23/54 (42%)
Query: 660 ERVSASGKVVKTESGAKVKATKTGIYKKWKERSHKKVYLKGASNEGNAEETTSV 713
++ A GK++K SG K K ++ KK+ + + +E +V
Sbjct: 758 DQQKAEGKIIKKSSGFSGKGFKFDETEQALANERKKLQKAALGLQDSDDEDAAV 811
>UNIPROTKB|Q62780 [details] [associations]
symbol:Ddx46 "Probable ATP-dependent RNA helicase DDX46"
species:10116 "Rattus norvegicus" [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:708480 GO:GO:0005524
GO:GO:0005634 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
OrthoDB:EOG441Q9T EMBL:U25746 EMBL:BC107590 IPI:IPI00208266
PIR:A57514 RefSeq:NP_620798.1 UniGene:Rn.3436
ProteinModelPortal:Q62780 STRING:Q62780 PhosphoSite:Q62780
PRIDE:Q62780 Ensembl:ENSRNOT00000029885 GeneID:245957
KEGG:rno:245957 UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
ArrayExpress:Q62780 Genevestigator:Q62780
GermOnline:ENSRNOG00000021637 Uniprot:Q62780
Length = 1032
Score = 519 (187.8 bits), Expect = 1.2e-47, Sum P(2) = 1.2e-47
Identities = 124/376 (32%), Positives = 203/376 (53%)
Query: 30 LSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRL--NQ 87
+S + ++K+ GY+ PTPIQ + +P I+SG D++ +A+TGSGKT AFL+PM + + +
Sbjct: 379 ISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQR 438
Query: 88 HVPQG-GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDI 146
+ +G G A+I++PTR+LALQ K K+ + LR+ + GG + Q EL + +I
Sbjct: 439 SLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEI 498
Query: 147 IIATPGRLMHHLSEVEDM--SLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
I+ TPGR++ L+ +L+ V YVV DEAD +F MGF Q+ +I+ + +RQT++
Sbjct: 499 IVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVM 558
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT P A+ A+ L P V++ + + D++ + +E+K LL ++ H
Sbjct: 559 FSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLG-HYQ 617
Query: 265 SDQQTLIFVSTKHHVE-FLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+IFV + H + L L R S+ +G +DQ R ++ F+ L+ T
Sbjct: 618 ESGSVIIFVDKQEHADGLLKDLMRASYPCMSL-HGGIDQYDRDSIINDFKNGTCKLLVAT 676
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHL 383
VAARG+D+ L V+N+ P + +VHR ++F+T + Y D+
Sbjct: 677 SVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIK 736
Query: 384 FLSKPIRAAPSEEEVL 399
L A P + E L
Sbjct: 737 ALELSGTAVPPDLEKL 752
Score = 41 (19.5 bits), Expect = 1.2e-47, Sum P(2) = 1.2e-47
Identities = 12/54 (22%), Positives = 23/54 (42%)
Query: 660 ERVSASGKVVKTESGAKVKATKTGIYKKWKERSHKKVYLKGASNEGNAEETTSV 713
++ A GK++K SG K K ++ KK+ + + +E +V
Sbjct: 758 DQQKAEGKIIKKSSGFSGKGFKFDETEQALANERKKLQKAALGLQDSDDEDAAV 811
>ASPGD|ASPL0000037981 [details] [associations]
symbol:AN2932 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:BN001306 EMBL:AACD01000051 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 KO:K03257 OMA:TENDARQ RefSeq:XP_660536.1
PRIDE:Q5B948 GeneID:2874390 KEGG:ani:AN2932.2 OrthoDB:EOG4PG98F
Uniprot:Q5B948
Length = 398
Score = 498 (180.4 bits), Expect = 1.9e-47, P = 1.9e-47
Identities = 109/369 (29%), Positives = 194/369 (52%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+S+ L P + R + G++ P+ IQ++ + I+ G DV+A A++G+GKTA F + LQ+
Sbjct: 27 FDSMELKPELLRGVYAYGFERPSAIQQRAILPIVKGNDVIAQAQSGTGKTATFSISALQK 86
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L+ +V +ALI++PTR+LA Q K +G + +++ +GG ++ L + P
Sbjct: 87 LDPNVK--ACQALIVAPTRELAQQIQKVVIAIGDFMNIQCHACIGGTAVRDDMNALREGP 144
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
I++ TPGR+ H + + + ++ + DEAD + GF EQ++ I L ++ Q +L
Sbjct: 145 QIVVGTPGRI-HDMIQRRVLKTDQMKMFILDEADEMLSRGFTEQIYDIFQLLPQSTQVVL 203
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
SAT+P + E +RDP + + +K + + +EE L + E ++
Sbjct: 204 LSATMPQDVLEVTTKFMRDPVRILVKKQELTLEGIKQFYIAVEKEEWKLDTLSDLYETVT 263
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
Q +IF +T+ V++L S +GDM+Q R + + FR+ + LI TD
Sbjct: 264 ITQ-AVIFCNTRRKVDWLTDKLTARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATD 322
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHLF 384
+ ARGID+ + VIN+D P + ++HR+ +FVT++D+ + ++ F
Sbjct: 323 LLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVTADDVRMMREIEQF 382
Query: 385 LSKPIRAAP 393
S I P
Sbjct: 383 YSTQIEEMP 391
>UNIPROTKB|F1NM08 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 GO:GO:0003712 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:AADN02030017 IPI:IPI00680367 Ensembl:ENSGALT00000005586
ArrayExpress:F1NM08 Uniprot:F1NM08
Length = 595
Score = 498 (180.4 bits), Expect = 1.9e-47, P = 1.9e-47
Identities = 125/394 (31%), Positives = 207/394 (52%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F N NV I+R+ + PT IQ + P+ LSG D+V +A+TGSGKT ++L+P +
Sbjct: 84 FYEANFPANVMEVIQRQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVH 143
Query: 85 LNQHVP---QG-GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
+N H P +G G L+L+PTR+LA Q + E R L+ + + GG Q +L
Sbjct: 144 IN-HQPFLERGDGPICLVLAPTRELAQQVQQVAAEYSRACRLKSTCIYGGAPKGPQIRDL 202
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
+ +I IATPGRL+ L E +L+ Y+V DEAD + MGF Q+ KI+ Q+ +R
Sbjct: 203 ERGVEICIATPGRLIDFL-EAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 261
Query: 201 QTLLFSATLPSALAEFAKAGLRD-PHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI 259
QTL++SAT P + + A+ L++ H+ ++ + ++ EK L+ ++
Sbjct: 262 QTLMWSATWPKEVRQLAEDFLKEYVHINIGALELSANHNILQIVDVCHDVEKDDKLIRLM 321
Query: 260 REHISS-DQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
E +S + +T++FV TK + L R +G +GD Q R ++ F+ K
Sbjct: 322 EEIMSEKENKTIVFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAP 381
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYL 378
LI TDVA+RG+D+ + VIN+D+P + ++HR+ ++F T ++ +
Sbjct: 382 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQV 441
Query: 379 LDLHLFLSKPIRAA-PSEEEVLLDMDGVMSKIDQ 411
DL L + +A P +++ D S+ D+
Sbjct: 442 NDLISVLREANQAINPKLLQLIEDRGSGRSRGDR 475
>UNIPROTKB|F1NXI3 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0003713 "transcription coactivator
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0007623 "circadian rhythm" evidence=IEA] [GO:0030331 "estrogen
receptor binding" evidence=IEA] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0036002 "pre-mRNA binding" evidence=IEA] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0050681 "androgen receptor binding" evidence=IEA] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0045944 GO:GO:0000122
GO:GO:0003713 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AADN02030017 IPI:IPI00598253
ProteinModelPortal:F1NXI3 Ensembl:ENSGALT00000034644
ArrayExpress:F1NXI3 Uniprot:F1NXI3
Length = 603
Score = 498 (180.4 bits), Expect = 1.9e-47, P = 1.9e-47
Identities = 125/394 (31%), Positives = 207/394 (52%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F N NV I+R+ + PT IQ + P+ LSG D+V +A+TGSGKT ++L+P +
Sbjct: 92 FYEANFPANVMEVIQRQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVH 151
Query: 85 LNQHVP---QG-GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
+N H P +G G L+L+PTR+LA Q + E R L+ + + GG Q +L
Sbjct: 152 IN-HQPFLERGDGPICLVLAPTRELAQQVQQVAAEYSRACRLKSTCIYGGAPKGPQIRDL 210
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
+ +I IATPGRL+ L E +L+ Y+V DEAD + MGF Q+ KI+ Q+ +R
Sbjct: 211 ERGVEICIATPGRLIDFL-EAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 269
Query: 201 QTLLFSATLPSALAEFAKAGLRD-PHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI 259
QTL++SAT P + + A+ L++ H+ ++ + ++ EK L+ ++
Sbjct: 270 QTLMWSATWPKEVRQLAEDFLKEYVHINIGALELSANHNILQIVDVCHDVEKDDKLIRLM 329
Query: 260 REHISS-DQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
E +S + +T++FV TK + L R +G +GD Q R ++ F+ K
Sbjct: 330 EEIMSEKENKTIVFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAP 389
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYL 378
LI TDVA+RG+D+ + VIN+D+P + ++HR+ ++F T ++ +
Sbjct: 390 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQV 449
Query: 379 LDLHLFLSKPIRAA-PSEEEVLLDMDGVMSKIDQ 411
DL L + +A P +++ D S+ D+
Sbjct: 450 NDLISVLREANQAINPKLLQLIEDRGSGRSRGDR 483
>POMBASE|SPAC1F7.02c [details] [associations]
symbol:has1 "ATP-dependent RNA helicase Has1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC1F7.02c GO:GO:0005524 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY OrthoDB:EOG4ZKNVS PIR:S62574 RefSeq:NP_594488.1
ProteinModelPortal:Q09916 STRING:Q09916 EnsemblFungi:SPAC1F7.02c.1
GeneID:2541668 KEGG:spo:SPAC1F7.02c NextBio:20802761 Uniprot:Q09916
Length = 578
Score = 498 (180.4 bits), Expect = 1.9e-47, P = 1.9e-47
Identities = 110/336 (32%), Positives = 194/336 (57%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L LS N+ +AIK G++ T IQ++++P +L+G DV+ A+TGSGKT AFL+P ++
Sbjct: 91 FSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEM 150
Query: 85 LN--QHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
L + P+ G +I+SPTR+LALQ KEL +Y +++GG + ++ ++L +
Sbjct: 151 LYALKFKPRNGTGVIIISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADKLVK 210
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL-SENRQ 201
++++ATPGRL+ HL + +++ +V DEAD + +GF +++ +I+ L SENRQ
Sbjct: 211 GVNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGFEDEMRQIMKILPSENRQ 270
Query: 202 TLLFSATLPSALAEFAKAGLRD-PHLVRLDVD--TKISPDLKLAFFTLRQEEKHAALLYM 258
TLLFSAT + + + A+ L+ P V +D T L+ + + +++ L
Sbjct: 271 TLLFSATQTTKVEDLARISLKPGPLYVNVDSGKPTSTVEGLEQGYVVVDSDKRFLLLFSF 330
Query: 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
++ ++ ++ ++F+S+ V+++ L L +G Q R F +
Sbjct: 331 LKRNLK--KKVIVFMSSCASVKYMAELLNYIDLPVLDLHGKQKQQRRTNTFFEFCNAEKG 388
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRV 354
L+ T+VAARG+DIP +D ++ +D P P+ ++HRV
Sbjct: 389 ILLCTNVAARGLDIPAVDWIVQYDPPDDPRDYIHRV 424
>UNIPROTKB|C9JMU5 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 EMBL:Z97056 IPI:IPI01022339
HGNC:HGNC:2740 ChiTaRS:DDX17 ProteinModelPortal:C9JMU5 SMR:C9JMU5
STRING:C9JMU5 PRIDE:C9JMU5 Ensembl:ENST00000381633
ArrayExpress:C9JMU5 Bgee:C9JMU5 Uniprot:C9JMU5
Length = 652
Score = 497 (180.0 bits), Expect = 2.6e-47, P = 2.6e-47
Identities = 125/388 (32%), Positives = 209/388 (53%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F N V + + + PTPIQ + PL LSG D+V +A+TGSGKT A+L+P +
Sbjct: 94 FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVH 153
Query: 85 LNQ--HVPQG-GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
+N ++ +G G L+L+PTR+LA Q + + G+ + L+ + + GG Q +L
Sbjct: 154 INHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLE 213
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ +I IATPGRL+ L E +L+ Y+V DEAD + MGF Q+ KI+ Q+ +RQ
Sbjct: 214 RGVEICIATPGRLIDFL-ESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 272
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRL-DVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
TL++SAT P + + A+ LRD + + +++ + ++ + EK L+ ++
Sbjct: 273 TLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLME 332
Query: 261 EHISS-DQQTLIFVSTKHHVEFLNVLFREEGLEPSVC-YGDMDQDARKIHVSRFRARKTM 318
E ++ + +T+IFV TK + L R +G P++C +GD Q R ++ FR+ K
Sbjct: 333 EIMAEKENKTIIFVETKRRCDDLTRRMRRDGW-PAMCIHGDKSQPERDWVLNEFRSGKAP 391
Query: 319 FLIVTDVAARGI--DIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMA 376
LI TDVA+RG+ D+ + VIN+D+P + +VHR+ ++F T ++
Sbjct: 392 ILIATDVASRGLGFDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLK 451
Query: 377 YLLDLHLFLSKPIRAAPSEEEVLLDMDG 404
+L L + +A + L+D G
Sbjct: 452 QARELIKVLEEANQAINPKLMQLVDHRG 479
>SGD|S000001767 [details] [associations]
symbol:TIF1 "Translation initiation factor eIF4A"
species:4932 "Saccharomyces cerevisiae" [GO:0003743 "translation
initiation factor activity" evidence=IEA;IMP;IDA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006413 "translational
initiation" evidence=IEA;IMP;IDA] [GO:0006412 "translation"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IMP;IDA] [GO:0005840 "ribosome" evidence=TAS] [GO:0016281
"eukaryotic translation initiation factor 4F complex"
evidence=IGI;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000001767
SGD:S000003674 GO:GO:0005524 GO:GO:0005737 EMBL:BK006943
EMBL:BK006944 GO:GO:0003743 EMBL:X87371 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 KO:K03854
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 EMBL:U25436 KO:K03257
OMA:IKMFILD OrthoDB:EOG4PG98F EMBL:X12813 EMBL:X12814 EMBL:X58099
EMBL:Z49413 EMBL:Z28284 PIR:S05835 RefSeq:NP_012397.1
RefSeq:NP_012985.3 RefSeq:NP_012987.3 PDB:1FUK PDB:1FUU PDB:1QDE
PDB:1QVA PDB:2VSO PDB:2VSX PDBsum:1FUK PDBsum:1FUU PDBsum:1QDE
PDBsum:1QVA PDBsum:2VSO PDBsum:2VSX ProteinModelPortal:P10081
SMR:P10081 DIP:DIP-4571N IntAct:P10081 MINT:MINT-546056
STRING:P10081 SWISS-2DPAGE:P10081 PaxDb:P10081 EnsemblFungi:YJL138C
EnsemblFungi:YKR059W GeneID:853303 GeneID:853933 GeneID:853935
KEGG:sce:YJL138C KEGG:sce:YKR059W KEGG:sce:YKR061W SABIO-RK:P10081
EvolutionaryTrace:P10081 NextBio:973627 Genevestigator:P10081
GermOnline:YJL138C GermOnline:YKR059W Uniprot:P10081
Length = 395
Score = 497 (180.0 bits), Expect = 2.6e-47, P = 2.6e-47
Identities = 117/377 (31%), Positives = 196/377 (51%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ + L N+ R + G++ P+ IQ++ + I+ G DV+A A++G+GKT F + LQR
Sbjct: 24 FDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQR 83
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
++ V +AL+L+PTR+LALQ K L + D+++ +GG S E L ++
Sbjct: 84 IDTSVK--APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL-RDA 140
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
I++ TPGR+ ++ + K ++ + DEAD + GF EQ+++I L Q +L
Sbjct: 141 QIVVGTPGRVFDNIQRRRFRTDK-IKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVL 199
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
SAT+P+ + E +R+P + + D +K + + +EE L + + IS
Sbjct: 200 LSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSIS 259
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
Q +IF +T+ VE L R + S Y D+ Q R + FR+ + LI TD
Sbjct: 260 VTQ-AVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD 318
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHLF 384
+ ARGID+ + VIN+D P + ++HR+ +FVT+ED+ + +L F
Sbjct: 319 LLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKF 378
Query: 385 LSKPIRAAPSEEEVLLD 401
S I PS+ LL+
Sbjct: 379 YSTQIEELPSDIATLLN 395
>SGD|S000003674 [details] [associations]
symbol:TIF2 "Translation initiation factor eIF4A"
species:4932 "Saccharomyces cerevisiae" [GO:0003743 "translation
initiation factor activity" evidence=IEA;ISS;IDA;TAS] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;ISS;IDA] [GO:0006446 "regulation of translational
initiation" evidence=ISS] [GO:0005840 "ribosome" evidence=TAS]
[GO:0016281 "eukaryotic translation initiation factor 4F complex"
evidence=IGI;ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IMP] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0006413 "translational initiation"
evidence=IEA;TAS] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000001767 SGD:S000003674 GO:GO:0005524
GO:GO:0005737 EMBL:BK006943 EMBL:BK006944 GO:GO:0003743 EMBL:X87371
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
KO:K03854 eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 EMBL:U25436 KO:K03257
OMA:IKMFILD OrthoDB:EOG4PG98F EMBL:X12813 EMBL:X12814 EMBL:X58099
EMBL:Z49413 EMBL:Z28284 PIR:S05835 RefSeq:NP_012397.1
RefSeq:NP_012985.3 RefSeq:NP_012987.3 PDB:1FUK PDB:1FUU PDB:1QDE
PDB:1QVA PDB:2VSO PDB:2VSX PDBsum:1FUK PDBsum:1FUU PDBsum:1QDE
PDBsum:1QVA PDBsum:2VSO PDBsum:2VSX ProteinModelPortal:P10081
SMR:P10081 DIP:DIP-4571N IntAct:P10081 MINT:MINT-546056
STRING:P10081 SWISS-2DPAGE:P10081 PaxDb:P10081 EnsemblFungi:YJL138C
EnsemblFungi:YKR059W GeneID:853303 GeneID:853933 GeneID:853935
KEGG:sce:YJL138C KEGG:sce:YKR059W KEGG:sce:YKR061W SABIO-RK:P10081
EvolutionaryTrace:P10081 NextBio:973627 Genevestigator:P10081
GermOnline:YJL138C GermOnline:YKR059W Uniprot:P10081
Length = 395
Score = 497 (180.0 bits), Expect = 2.6e-47, P = 2.6e-47
Identities = 117/377 (31%), Positives = 196/377 (51%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ + L N+ R + G++ P+ IQ++ + I+ G DV+A A++G+GKT F + LQR
Sbjct: 24 FDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQR 83
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
++ V +AL+L+PTR+LALQ K L + D+++ +GG S E L ++
Sbjct: 84 IDTSVK--APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL-RDA 140
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
I++ TPGR+ ++ + K ++ + DEAD + GF EQ+++I L Q +L
Sbjct: 141 QIVVGTPGRVFDNIQRRRFRTDK-IKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVL 199
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
SAT+P+ + E +R+P + + D +K + + +EE L + + IS
Sbjct: 200 LSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSIS 259
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
Q +IF +T+ VE L R + S Y D+ Q R + FR+ + LI TD
Sbjct: 260 VTQ-AVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD 318
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHLF 384
+ ARGID+ + VIN+D P + ++HR+ +FVT+ED+ + +L F
Sbjct: 319 LLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKF 378
Query: 385 LSKPIRAAPSEEEVLLD 401
S I PS+ LL+
Sbjct: 379 YSTQIEELPSDIATLLN 395
>WB|WBGene00021277 [details] [associations]
symbol:Y23H5B.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0003723 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268801 GeneTree:ENSGT00550000074980 OMA:ADKVIEP
HSSP:P10081 EMBL:FO080963 RefSeq:NP_490989.1
ProteinModelPortal:Q9N478 SMR:Q9N478 STRING:Q9N478 PaxDb:Q9N478
EnsemblMetazoa:Y23H5B.6 GeneID:171810 KEGG:cel:CELE_Y23H5B.6
UCSC:Y23H5B.6 CTD:171810 WormBase:Y23H5B.6 InParanoid:Q9N478
NextBio:872791 Uniprot:Q9N478
Length = 732
Score = 510 (184.6 bits), Expect = 2.9e-47, P = 2.9e-47
Identities = 143/468 (30%), Positives = 234/468 (50%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE LS +K Y PT IQR T+ L+G+DVV A+TGSGKT A ++P+L+
Sbjct: 78 FEDFPLSWRTLEGLKDNDYTKPTEIQRDTIAYSLTGSDVVGAAKTGSGKTLALVIPVLEA 137
Query: 85 L--NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
L + P G+ ALI+SPTR+LALQT +G + L++GG + + ++
Sbjct: 138 LWRAKWSPDYGLGALIISPTRELALQTFSTINAVGAHHGFSCGLVIGGSDVAFERNRIS- 196
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
+II+ TPGRL+ H+ E MS S++ +V DEAD + MGF++QL+ I+ L RQT
Sbjct: 197 GINIIVCTPGRLLQHMDENAQMSCDSLQVLVLDEADRMLDMGFSKQLNSIINNLPAERQT 256
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKIS-PD-LKLAFFTLRQEEKHAALLYMIR 260
LLFSAT + + + DP V + + + PD LK ++ + +E K AL I
Sbjct: 257 LLFSATQTRNVKDLCRVCTNDPVFVSVHENASAATPDNLKQSYVIVEEEHKINALWSFIE 316
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFRE--EGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
H +++L+FVS+ FL F + GL +G M+Q R ++F K
Sbjct: 317 AH--RKKKSLVFVSSCKQARFLTEAFSQLRPGLPVMGLWGTMNQKKRIETFTKFDESKAA 374
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVT-SEDMAY 377
LI TDVA+RG+D +D VI D P + ++HRV V+ S++ A
Sbjct: 375 VLIATDVASRGLDFEHIDWVIQVDCPAQIDDYIHRVGRSARMDDSGNSLLMVSPSQEEAM 434
Query: 378 L--LDLHLFLSKPIRAAPSE-EEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDR 434
+ L+ H + ++ P +V + + ++++ + + + +++ + +
Sbjct: 435 IGKLEKHSIPIEELKIHPDAMSDVRVKLRAILAESQELKEYAQKSIVAYLRSIYTMKDKK 494
Query: 435 VREI--IDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPRE 480
V ++ ID++A +S R +K K S E + K++ E
Sbjct: 495 VFDVEAIDAAALADSFGLVSVPRVRFLNK-KAKKSGEKLME-KEVKEE 540
>UNIPROTKB|E1BSC0 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AADN02028359
IPI:IPI00577115 Ensembl:ENSGALT00000010339 Uniprot:E1BSC0
Length = 1031
Score = 512 (185.3 bits), Expect = 3.0e-47, Sum P(2) = 3.0e-47
Identities = 124/377 (32%), Positives = 203/377 (53%)
Query: 30 LSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRL-NQH 88
+S + A+K+ GY+ PTPIQ + +P I++G D++ +A+TGSGKT AFL+PM + + +Q
Sbjct: 378 ISMKILTALKKHGYEKPTPIQSQAIPAIMNGRDLIGIAKTGSGKTIAFLLPMFRHIMDQR 437
Query: 89 -VPQG-GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDI 146
+ +G G A+I++PTR+LALQ K K+ + LR+ + GG + Q EL + +I
Sbjct: 438 ALEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEI 497
Query: 147 IIATPGRLMHHLSEVEDM--SLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
I+ TPGR++ L+ +L+ V YVV DEAD +F MGF Q+ +I+ + +RQT++
Sbjct: 498 IVCTPGRMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVM 557
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT P A+ A+ L P V++ + + D++ + +E K LL ++ H
Sbjct: 558 FSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQHVIVIEEENKFLKLLELLG-HYQ 616
Query: 265 SDQQTLIFVSTKHHVE-FLNVLFREEGLEPSVC-YGDMDQDARKIHVSRFRARKTMFLIV 322
+IFV + H + L L R P + +G +DQ R ++ F+ L+
Sbjct: 617 EKGSVIIFVDKQEHADGLLKDLMRAS--YPCLSLHGGIDQYDRDSIINDFKNGTCKLLVA 674
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLH 382
T VAARG+D+ L V+N+ P + +VHR ++F+T + Y D+
Sbjct: 675 TSVAARGLDVKQLMLVVNYSCPNHYEDYVHRAGRTGRAGNKGFAYTFITEDQARYAGDII 734
Query: 383 LFLSKPIRAAPSEEEVL 399
L P++ E L
Sbjct: 735 KALELSGNPIPADLEKL 751
Score = 47 (21.6 bits), Expect = 3.0e-47, Sum P(2) = 3.0e-47
Identities = 14/54 (25%), Positives = 24/54 (44%)
Query: 660 ERVSASGKVVKTESGAKVKATKTGIYKKWKERSHKKVYLKGASNEGNAEETTSV 713
E+ A GK++K SG K K ++ KK+ + + +E T+V
Sbjct: 757 EQQKAEGKLIKKSSGFSGKGFKFDETEQALANERKKLQKAALGLQDSDDEDTAV 810
>UNIPROTKB|Q47Z59 [details] [associations]
symbol:CPS_3215 "Putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0042254
"ribosome biogenesis" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 496 (179.7 bits), Expect = 3.4e-47, P = 3.4e-47
Identities = 123/395 (31%), Positives = 204/395 (51%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L + I+ G+ PT IQ++ +P ++G D++A ++TGSGKT AF++P LQR
Sbjct: 3 FSDFGLDSALMSTIEHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQR 62
Query: 85 L--NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
L N+ + + R +IL+PTR+LA Q + T + L++GG++ Q + L +
Sbjct: 63 LSKNRALSKRDPRVVILTPTRELAKQVFSQLRLFTANTQYKAVLILGGENFNDQVKVLQK 122
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSEN-RQ 201
P+ I+ATPGRL HL++ L +E ++ DEAD + +GF+++L +I RQ
Sbjct: 123 EPEFIVATPGRLADHLTQGH-FHLNGLELLILDEADRMLDLGFSKELTQINKAADHRKRQ 181
Query: 202 TLLFSATLPSA-LAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALL--YM 258
TLLFSATL A + EFA L P + ++ D+ F+ + ALL ++
Sbjct: 182 TLLFSATLDHAQVNEFATELLTKPKRIAINAGHSEHVDIAKRFYLADNLTQKEALLQHFL 241
Query: 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
+ E QQ +IF +T+ + L L E+ L G+++Q R + F +
Sbjct: 242 VTE---KSQQIIIFTATRSDTDRLAKLLTEQNLNAVALSGELNQGQRNQIMESFSKGQHK 298
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYL 378
L+ TD+A+RG+D+ + +VIN+D P + FVHR+ S V D L
Sbjct: 299 ILVTTDLASRGLDLINVSHVINFDMPKHTEEFVHRIGRTGRAGTKGDAISLVGPNDWLSL 358
Query: 379 LDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAI 413
++ FL + I + E + + G+ K ++A+
Sbjct: 359 KNVEAFLQQKI-SFTKVEGIKVKFKGLKPKKEKAV 392
>TIGR_CMR|CPS_3215 [details] [associations]
symbol:CPS_3215 "putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 496 (179.7 bits), Expect = 3.4e-47, P = 3.4e-47
Identities = 123/395 (31%), Positives = 204/395 (51%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L + I+ G+ PT IQ++ +P ++G D++A ++TGSGKT AF++P LQR
Sbjct: 3 FSDFGLDSALMSTIEHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIPALQR 62
Query: 85 L--NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
L N+ + + R +IL+PTR+LA Q + T + L++GG++ Q + L +
Sbjct: 63 LSKNRALSKRDPRVVILTPTRELAKQVFSQLRLFTANTQYKAVLILGGENFNDQVKVLQK 122
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSEN-RQ 201
P+ I+ATPGRL HL++ L +E ++ DEAD + +GF+++L +I RQ
Sbjct: 123 EPEFIVATPGRLADHLTQGH-FHLNGLELLILDEADRMLDLGFSKELTQINKAADHRKRQ 181
Query: 202 TLLFSATLPSA-LAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALL--YM 258
TLLFSATL A + EFA L P + ++ D+ F+ + ALL ++
Sbjct: 182 TLLFSATLDHAQVNEFATELLTKPKRIAINAGHSEHVDIAKRFYLADNLTQKEALLQHFL 241
Query: 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
+ E QQ +IF +T+ + L L E+ L G+++Q R + F +
Sbjct: 242 VTE---KSQQIIIFTATRSDTDRLAKLLTEQNLNAVALSGELNQGQRNQIMESFSKGQHK 298
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYL 378
L+ TD+A+RG+D+ + +VIN+D P + FVHR+ S V D L
Sbjct: 299 ILVTTDLASRGLDLINVSHVINFDMPKHTEEFVHRIGRTGRAGTKGDAISLVGPNDWLSL 358
Query: 379 LDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAI 413
++ FL + I + E + + G+ K ++A+
Sbjct: 359 KNVEAFLQQKI-SFTKVEGIKVKFKGLKPKKEKAV 392
>UNIPROTKB|F1MBQ8 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072332 "intrinsic apoptotic signaling pathway by p53
class mediator" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0060765 "regulation of androgen
receptor signaling pathway" evidence=IEA] [GO:0050681 "androgen
receptor binding" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IEA] [GO:0036002
"pre-mRNA binding" evidence=IEA] [GO:0033148 "positive regulation
of intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0030331 "estrogen receptor binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0000122 GO:GO:0003713 GO:GO:0033148 GO:GO:0043517
GO:GO:0060765 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
KO:K12823 OMA:IDAMSGY GeneTree:ENSGT00660000095174 CTD:1655
EMBL:DAAA02049347 IPI:IPI01002739 RefSeq:NP_001178324.1
UniGene:Bt.64934 ProteinModelPortal:F1MBQ8 SMR:F1MBQ8 PRIDE:F1MBQ8
Ensembl:ENSBTAT00000024514 GeneID:533700 KEGG:bta:533700
NextBio:20876124 ArrayExpress:F1MBQ8 Uniprot:F1MBQ8
Length = 614
Score = 495 (179.3 bits), Expect = 4.4e-47, P = 4.4e-47
Identities = 119/363 (32%), Positives = 193/363 (53%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F N NV I R+ + PT IQ + P+ LSG D+V +A+TGSGKT ++L+P +
Sbjct: 96 FYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVH 155
Query: 85 LNQHVP---QG-GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
+N H P +G G L+L+PTR+LA Q + E R L+ + + GG Q +L
Sbjct: 156 IN-HQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDL 214
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
+ +I IATPGRL+ L E +L+ Y+V DEAD + MGF Q+ KI+ Q+ +R
Sbjct: 215 ERGVEICIATPGRLIDFL-ECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 273
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLD-VDTKISPDLKLAFFTLRQEEKHAALLYMI 259
QTL++SAT P + + A+ L+D + + ++ + ++ EK L+ ++
Sbjct: 274 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 333
Query: 260 REHISS-DQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
E +S + +T++FV TK + L R +G +GD Q R ++ F+ K
Sbjct: 334 EEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAP 393
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYL 378
LI TDVA+RG+D+ + VIN+D+P + ++HR+ ++F T ++ +
Sbjct: 394 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQV 453
Query: 379 LDL 381
DL
Sbjct: 454 SDL 456
>UNIPROTKB|F1PEA6 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] [GO:0003712 "transcription cofactor
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AAEX03006361
Ensembl:ENSCAFT00000018595 Uniprot:F1PEA6
Length = 671
Score = 495 (179.3 bits), Expect = 4.4e-47, P = 4.4e-47
Identities = 119/363 (32%), Positives = 193/363 (53%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F N NV I R+ + PT IQ + P+ LSG D+V +A+TGSGKT ++L+P +
Sbjct: 153 FYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVH 212
Query: 85 LNQHVP---QG-GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
+N H P +G G L+L+PTR+LA Q + E R L+ + + GG Q +L
Sbjct: 213 IN-HQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDL 271
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
+ +I IATPGRL+ L E +L+ Y+V DEAD + MGF Q+ KI+ Q+ +R
Sbjct: 272 ERGVEICIATPGRLIDFL-ECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 330
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLD-VDTKISPDLKLAFFTLRQEEKHAALLYMI 259
QTL++SAT P + + A+ L+D + + ++ + ++ EK L+ ++
Sbjct: 331 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 390
Query: 260 REHISS-DQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
E +S + +T++FV TK + L R +G +GD Q R ++ F+ K
Sbjct: 391 EEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAP 450
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYL 378
LI TDVA+RG+D+ + VIN+D+P + ++HR+ ++F T ++ +
Sbjct: 451 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQV 510
Query: 379 LDL 381
DL
Sbjct: 511 SDL 513
>UNIPROTKB|J3KTA4 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC009994 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HGNC:HGNC:2746 ChiTaRS:DDX5 ProteinModelPortal:J3KTA4
Ensembl:ENST00000578804 Uniprot:J3KTA4
Length = 614
Score = 495 (179.3 bits), Expect = 4.4e-47, P = 4.4e-47
Identities = 119/363 (32%), Positives = 193/363 (53%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F N NV I R+ + PT IQ + P+ LSG D+V +A+TGSGKT ++L+P +
Sbjct: 96 FYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVH 155
Query: 85 LNQHVP---QG-GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
+N H P +G G L+L+PTR+LA Q + E R L+ + + GG Q +L
Sbjct: 156 IN-HQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDL 214
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
+ +I IATPGRL+ L E +L+ Y+V DEAD + MGF Q+ KI+ Q+ +R
Sbjct: 215 ERGVEICIATPGRLIDFL-ECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 273
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLD-VDTKISPDLKLAFFTLRQEEKHAALLYMI 259
QTL++SAT P + + A+ L+D + + ++ + ++ EK L+ ++
Sbjct: 274 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 333
Query: 260 REHISS-DQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
E +S + +T++FV TK + L R +G +GD Q R ++ F+ K
Sbjct: 334 EEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAP 393
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYL 378
LI TDVA+RG+D+ + VIN+D+P + ++HR+ ++F T ++ +
Sbjct: 394 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQV 453
Query: 379 LDL 381
DL
Sbjct: 454 SDL 456
>UNIPROTKB|P17844 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0005516 "calmodulin binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0019899 "enzyme binding"
evidence=IEA] [GO:0045069 "regulation of viral genome replication"
evidence=IEA] [GO:0048306 "calcium-dependent protein binding"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IMP;NAS]
[GO:0016049 "cell growth" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA;NAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0005515 "protein binding" evidence=IPI]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IMP] [GO:0072332
"intrinsic apoptotic signaling pathway by p53 class mediator"
evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA] [GO:2001014
"regulation of skeletal muscle cell differentiation" evidence=ISS]
[GO:0045667 "regulation of osteoblast differentiation"
evidence=ISS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0050681
"androgen receptor binding" evidence=IDA] [GO:0060765 "regulation
of androgen receptor signaling pathway" evidence=IMP] [GO:0033148
"positive regulation of intracellular estrogen receptor signaling
pathway" evidence=IDA] [GO:0003713 "transcription coactivator
activity" evidence=IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0030331 "estrogen receptor binding" evidence=IDA] [GO:0036002
"pre-mRNA binding" evidence=IDA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0016049 GO:GO:0001701 GO:GO:0045944
GO:GO:0006351 GO:GO:0000122 GO:GO:0003713 EMBL:CH471109
GO:GO:0033148 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0045069 GO:GO:0004004 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY HOVERGEN:HBG015893
GO:GO:2001014 EMBL:X52104 EMBL:AF015812 EMBL:BT006943 EMBL:AB451257
EMBL:BC016027 EMBL:X15729 EMBL:AJ010931 IPI:IPI00017617 PIR:JC1087
RefSeq:NP_004387.1 UniGene:Hs.279806 PDB:3FE2 PDB:4A4D PDBsum:3FE2
PDBsum:4A4D ProteinModelPortal:P17844 SMR:P17844 DIP:DIP-29844N
IntAct:P17844 MINT:MINT-5000516 STRING:P17844 PhosphoSite:P17844
DMDM:129383 SWISS-2DPAGE:P17844 PaxDb:P17844 PeptideAtlas:P17844
PRIDE:P17844 DNASU:1655 Ensembl:ENST00000225792
Ensembl:ENST00000574715 GeneID:1655 KEGG:hsa:1655 UCSC:uc002jej.2
CTD:1655 GeneCards:GC17M062494 HGNC:HGNC:2746 HPA:CAB005868
HPA:HPA020043 MIM:180630 neXtProt:NX_P17844 PharmGKB:PA27228
InParanoid:P17844 OrthoDB:EOG4BVRTM PhylomeDB:P17844 ChiTaRS:DDX5
EvolutionaryTrace:P17844 GenomeRNAi:1655 NextBio:6816
ArrayExpress:P17844 Bgee:P17844 CleanEx:HS_DDX5
Genevestigator:P17844 GermOnline:ENSG00000108654 Uniprot:P17844
Length = 614
Score = 495 (179.3 bits), Expect = 4.4e-47, P = 4.4e-47
Identities = 119/363 (32%), Positives = 193/363 (53%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F N NV I R+ + PT IQ + P+ LSG D+V +A+TGSGKT ++L+P +
Sbjct: 96 FYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVH 155
Query: 85 LNQHVP---QG-GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
+N H P +G G L+L+PTR+LA Q + E R L+ + + GG Q +L
Sbjct: 156 IN-HQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDL 214
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
+ +I IATPGRL+ L E +L+ Y+V DEAD + MGF Q+ KI+ Q+ +R
Sbjct: 215 ERGVEICIATPGRLIDFL-ECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 273
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLD-VDTKISPDLKLAFFTLRQEEKHAALLYMI 259
QTL++SAT P + + A+ L+D + + ++ + ++ EK L+ ++
Sbjct: 274 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 333
Query: 260 REHISS-DQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
E +S + +T++FV TK + L R +G +GD Q R ++ F+ K
Sbjct: 334 EEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAP 393
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYL 378
LI TDVA+RG+D+ + VIN+D+P + ++HR+ ++F T ++ +
Sbjct: 394 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQV 453
Query: 379 LDL 381
DL
Sbjct: 454 SDL 456
>UNIPROTKB|Q5R4I9 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9601 "Pongo abelii" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 KO:K12823 HOVERGEN:HBG015893
GO:GO:2001014 HSSP:P10081 CTD:1655 EMBL:CR861259
RefSeq:NP_001126958.1 UniGene:Pab.18500 ProteinModelPortal:Q5R4I9
PRIDE:Q5R4I9 GeneID:100173977 KEGG:pon:100173977 InParanoid:Q5R4I9
Uniprot:Q5R4I9
Length = 614
Score = 495 (179.3 bits), Expect = 4.4e-47, P = 4.4e-47
Identities = 119/363 (32%), Positives = 193/363 (53%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F N NV I R+ + PT IQ + P+ LSG D+V +A+TGSGKT ++L+P +
Sbjct: 96 FYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVH 155
Query: 85 LNQHVP---QG-GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
+N H P +G G L+L+PTR+LA Q + E R L+ + + GG Q +L
Sbjct: 156 IN-HQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDL 214
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
+ +I IATPGRL+ L E +L+ Y+V DEAD + MGF Q+ KI+ Q+ +R
Sbjct: 215 ERGVEICIATPGRLIDFL-ECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 273
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLD-VDTKISPDLKLAFFTLRQEEKHAALLYMI 259
QTL++SAT P + + A+ L+D + + ++ + ++ EK L+ ++
Sbjct: 274 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 333
Query: 260 REHISS-DQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
E +S + +T++FV TK + L R +G +GD Q R ++ F+ K
Sbjct: 334 EEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAP 393
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYL 378
LI TDVA+RG+D+ + VIN+D+P + ++HR+ ++F T ++ +
Sbjct: 394 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQV 453
Query: 379 LDL 381
DL
Sbjct: 454 SDL 456
>MGI|MGI:105037 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 5"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=ISO] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IDA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=IMP]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0030331 "estrogen
receptor binding" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=ISO]
[GO:0036002 "pre-mRNA binding" evidence=ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISO] [GO:0045069 "regulation of viral genome
replication" evidence=ISO] [GO:0045667 "regulation of osteoblast
differentiation" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0060765 "regulation of androgen receptor signaling pathway"
evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:0072332 "intrinsic apoptotic signaling pathway by
p53 class mediator" evidence=ISO] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:105037
GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0007623
GO:GO:0001701 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0030529 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
EMBL:AL603664 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014 OrthoDB:EOG4BVRTM
ChiTaRS:DDX5 EMBL:X65627 IPI:IPI00420363 PIR:I48385
UniGene:Mm.220038 ProteinModelPortal:Q61656 SMR:Q61656
DIP:DIP-32293N IntAct:Q61656 STRING:Q61656 PhosphoSite:Q61656
PaxDb:Q61656 PRIDE:Q61656 InParanoid:Q61656 CleanEx:MM_DDX5
Genevestigator:Q61656 GermOnline:ENSMUSG00000020719 Uniprot:Q61656
Length = 614
Score = 495 (179.3 bits), Expect = 4.4e-47, P = 4.4e-47
Identities = 119/363 (32%), Positives = 193/363 (53%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F N NV I R+ + PT IQ + P+ LSG D+V +A+TGSGKT ++L+P +
Sbjct: 96 FYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVH 155
Query: 85 LNQHVP---QG-GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
+N H P +G G L+L+PTR+LA Q + E R L+ + + GG Q +L
Sbjct: 156 IN-HQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDL 214
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
+ +I IATPGRL+ L E +L+ Y+V DEAD + MGF Q+ KI+ Q+ +R
Sbjct: 215 ERGVEICIATPGRLIDFL-ECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 273
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLD-VDTKISPDLKLAFFTLRQEEKHAALLYMI 259
QTL++SAT P + + A+ L+D + + ++ + ++ EK L+ ++
Sbjct: 274 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 333
Query: 260 REHISS-DQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
E +S + +T++FV TK + L R +G +GD Q R ++ F+ K
Sbjct: 334 EEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAP 393
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYL 378
LI TDVA+RG+D+ + VIN+D+P + ++HR+ ++F T ++ +
Sbjct: 394 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQV 453
Query: 379 LDL 381
DL
Sbjct: 454 SDL 456
>RGD|619906 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box helicase 5" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0003712 "transcription cofactor
activity" evidence=ISO] [GO:0003713 "transcription coactivator
activity" evidence=IEA;ISO] [GO:0003724 "RNA helicase activity"
evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0007623 "circadian
rhythm" evidence=IEA;ISO] [GO:0019899 "enzyme binding"
evidence=IDA] [GO:0030331 "estrogen receptor binding"
evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=IEA;ISO] [GO:0036002
"pre-mRNA binding" evidence=IEA;ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA;ISO] [GO:0045069 "regulation of viral genome
replication" evidence=IMP] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA;ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=IDA] [GO:0050681 "androgen receptor binding"
evidence=IEA;ISO] [GO:0060765 "regulation of androgen receptor
signaling pathway" evidence=IEA;ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA;ISO] [GO:0072332 "intrinsic apoptotic
signaling pathway by p53 class mediator" evidence=IEA;ISO]
[GO:2001014 "regulation of skeletal muscle cell differentiation"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:619906 GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0019899 GO:GO:0000122 GO:GO:0003713 GO:GO:0005516
GO:GO:0048306 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
EMBL:CH473948 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0045069 GO:GO:0004004
GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 CTD:1655
EMBL:BC079036 IPI:IPI00464718 RefSeq:NP_001007614.1
UniGene:Rn.162208 IntAct:Q6AYI1 STRING:Q6AYI1
Ensembl:ENSRNOT00000048490 GeneID:287765 KEGG:rno:287765
UCSC:RGD:619906 InParanoid:Q6AYI1 NextBio:626970
Genevestigator:Q6AYI1 Uniprot:Q6AYI1
Length = 615
Score = 495 (179.3 bits), Expect = 4.4e-47, P = 4.4e-47
Identities = 119/363 (32%), Positives = 193/363 (53%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F N NV I R+ + PT IQ + P+ LSG D+V +A+TGSGKT ++L+P +
Sbjct: 96 FYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVH 155
Query: 85 LNQHVP---QG-GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
+N H P +G G L+L+PTR+LA Q + E R L+ + + GG Q +L
Sbjct: 156 IN-HQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDL 214
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
+ +I IATPGRL+ L E +L+ Y+V DEAD + MGF Q+ KI+ Q+ +R
Sbjct: 215 ERGVEICIATPGRLIDFL-ECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 273
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLD-VDTKISPDLKLAFFTLRQEEKHAALLYMI 259
QTL++SAT P + + A+ L+D + + ++ + ++ EK L+ ++
Sbjct: 274 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 333
Query: 260 REHISS-DQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
E +S + +T++FV TK + L R +G +GD Q R ++ F+ K
Sbjct: 334 EEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAP 393
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYL 378
LI TDVA+RG+D+ + VIN+D+P + ++HR+ ++F T ++ +
Sbjct: 394 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQV 453
Query: 379 LDL 381
DL
Sbjct: 454 SDL 456
>ZFIN|ZDB-GENE-030131-925 [details] [associations]
symbol:ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
5" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-925 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:BX085195 IPI:IPI00488168 Ensembl:ENSDART00000055492
ArrayExpress:F1Q5L6 Bgee:F1Q5L6 Uniprot:F1Q5L6
Length = 617
Score = 495 (179.3 bits), Expect = 4.4e-47, P = 4.4e-47
Identities = 120/365 (32%), Positives = 197/365 (53%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F N V I ++ + PTPIQ + P+ LSG D+V +A+TGSGKT ++L+P +
Sbjct: 98 FHEANFPKYVMDVITKQNWTDPTPIQAQGWPVALSGKDMVGIAQTGSGKTLSYLLPAIVH 157
Query: 85 LNQHVP---QG-GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
+N H P G G L+L+PTR+LA Q + E G+ + ++ + + GG Q +L
Sbjct: 158 IN-HQPFLEHGDGPICLVLAPTRELAQQVQQVAAEYGKASRIKSTCIYGGAPKGPQIRDL 216
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
+ +I IATPGRL+ L E +L+ Y+V DEAD + MGF Q+ KI+ Q+ +R
Sbjct: 217 ERGVEICIATPGRLIDFL-EAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 275
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDT-KISPDLKLAFFT--LRQEEKHAALLY 257
QTL++SAT P + + A+ L++ ++++V ++S + + EK L+
Sbjct: 276 QTLMWSATWPKEVRQLAEDFLKE--YIQINVGALQLSANHNILQIVDVCNDGEKEDKLIR 333
Query: 258 MIREHISS-DQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK 316
++ E +S + +T+IFV TK + L R +G +GD +Q R ++ F+ K
Sbjct: 334 LLEEIMSEKENKTIIFVETKRRCDDLTRRMRRDGWPAMGIHGDKNQQERDWVLNEFKYGK 393
Query: 317 TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMA 376
LI TDVA+RG+D+ + VIN+D+P + ++HR+ ++F T +M
Sbjct: 394 APILIATDVASRGLDVEDVKFVINFDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMK 453
Query: 377 YLLDL 381
DL
Sbjct: 454 QAHDL 458
>TAIR|locus:2065215 [details] [associations]
symbol:AT2G47330 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003723 EMBL:AC002337 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 UniGene:At.12226 UniGene:At.25582
HOGENOM:HOG000268793 KO:K12835 EMBL:AY057700 EMBL:AY124871
IPI:IPI00516775 PIR:H84913 RefSeq:NP_566099.1
ProteinModelPortal:O22907 SMR:O22907 STRING:O22907 PaxDb:O22907
PRIDE:O22907 EnsemblPlants:AT2G47330.1 GeneID:819346
KEGG:ath:AT2G47330 GeneFarm:942 TAIR:At2g47330 InParanoid:O22907
OMA:QEYANLM PhylomeDB:O22907 ProtClustDB:CLSN2688982
Genevestigator:O22907 GermOnline:AT2G47330 Uniprot:O22907
Length = 760
Score = 510 (184.6 bits), Expect = 4.9e-47, P = 4.9e-47
Identities = 133/392 (33%), Positives = 207/392 (52%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE S + AIK++ Y+ PT IQ + +P++LSG DV+ +A+TGSGKTAAF++PM+
Sbjct: 230 FEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVH 289
Query: 85 L-NQHVPQG--GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
+ +Q Q G +I +PTR+LA Q K+ + LR+S + GG S QF+EL
Sbjct: 290 IMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKELK 349
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+I++ATPGRL+ L +++ +++ Y+V DEAD +F +GF Q+ I+GQ+ +RQ
Sbjct: 350 AGCEIVVATPGRLIDML-KMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQ 408
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQE-EKHAALLYMIR 260
TLLFSAT+P + + A+ L DP V + + D+ + + EK LL +
Sbjct: 409 TLLFSATMPWKVEKLAREILSDPIRVTVGEVGMANEDITQVVNVIPSDAEKLPWLLEKLP 468
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
I + L+F S K V+ + + + +GD DQ +R + +F++ L
Sbjct: 469 GMID-EGDVLVFASKKATVDEIEAQLTLNSFKVAALHGDKDQASRMETLQKFKSGVHHVL 527
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXX-XFSFVTSEDMAYLL 379
I TDVAARG+DI L V+N+D + VHR+ ++ VT + +
Sbjct: 528 IATDVAARGLDIKSLKTVVNYDIAKDMDMHVHRIGRTGRAGDRDGVAYTLVTQREARFAG 587
Query: 380 DLHLFLSKPIRAAPSEEEVLLDMDG-VMSKID 410
+L L + P E L DG SK D
Sbjct: 588 ELVNSLVAAGQNVPPELTDLAMKDGRFKSKRD 619
>TAIR|locus:2081061 [details] [associations]
symbol:AT3G06480 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005773
"vacuole" evidence=IDA] [GO:0006635 "fatty acid beta-oxidation"
evidence=RCA] [GO:0016558 "protein import into peroxisome matrix"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001202
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00397 PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS51194 SMART:SM00456 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0000184 GO:GO:0003723 EMBL:AC011623 Gene3D:2.20.70.10
SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 IPI:IPI00528334 RefSeq:NP_187299.1
UniGene:At.27592 ProteinModelPortal:Q9SQV1 SMR:Q9SQV1 PaxDb:Q9SQV1
PRIDE:Q9SQV1 EnsemblPlants:AT3G06480.1 GeneID:819825
KEGG:ath:AT3G06480 GeneFarm:1016 TAIR:At3g06480
HOGENOM:HOG000154116 InParanoid:Q9SQV1 OMA:GMRENSF PhylomeDB:Q9SQV1
ProtClustDB:CLSN2915418 Genevestigator:Q9SQV1 GermOnline:AT3G06480
Uniprot:Q9SQV1
Length = 1088
Score = 516 (186.7 bits), Expect = 5.0e-47, P = 5.0e-47
Identities = 127/362 (35%), Positives = 196/362 (54%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP--ML 82
FES L P + R + G+ PTPIQ +T P+ L D+VA+A+TGSGKT +L+P +L
Sbjct: 437 FESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFIL 496
Query: 83 QRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
R ++ + G LIL+PTR+LA Q GR + + + L GG Q +EL +
Sbjct: 497 LRHCRNDSRNGPTVLILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELER 556
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
DI++ATPGRL + + E++ + + V +V DEAD + MGF Q+ KI+ ++ RQT
Sbjct: 557 GADIVVATPGRL-NDILEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQT 615
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFT--LRQEEKHAALLYMIR 260
L+++AT P + + A L +P V + +++ + + + + Q EK L ++R
Sbjct: 616 LMYTATWPKEVRKIASDLLVNPVQVNIGRVDELAANKAITQYVEVVPQMEKERRLEQILR 675
Query: 261 EHISSDQQTLIFVSTKHHVEFL-NVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319
+ +IF STK + L + R G V +GD Q R +++FR+ K+
Sbjct: 676 SQ-ERGSKVIIFCSTKRLCDHLARSVGRHFGAV--VIHGDKTQGERDWVLNQFRSGKSCV 732
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLL 379
LI TDVAARG+DI + VIN+DFP + +VHR+ F+F T +D Y
Sbjct: 733 LIATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFTFFTEQDWKYAP 792
Query: 380 DL 381
DL
Sbjct: 793 DL 794
>UNIPROTKB|Q92841 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0033148 "positive
regulation of intracellular estrogen receptor signaling pathway"
evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0003724 "RNA helicase activity"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0008186 "RNA-dependent ATPase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005730
EMBL:CH471095 GO:GO:0045944 GO:GO:0006351 GO:GO:0003723
GO:GO:0006396 GO:GO:0003713 GO:GO:0033148 GO:GO:0030331
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 GO:GO:0008186 EMBL:U59321 EMBL:CR456432
EMBL:AL713763 EMBL:Z97056 EMBL:BC000595 IPI:IPI00651653
IPI:IPI00651677 IPI:IPI00889541 IPI:IPI01022339 PIR:S72367
RefSeq:NP_006377.2 UniGene:Hs.706116 UniGene:Hs.725500
ProteinModelPortal:Q92841 SMR:Q92841 DIP:DIP-29843N IntAct:Q92841
MINT:MINT-4545892 STRING:Q92841 PhosphoSite:Q92841 DMDM:3122595
REPRODUCTION-2DPAGE:IPI00023785 PaxDb:Q92841 PRIDE:Q92841
DNASU:10521 Ensembl:ENST00000403230 GeneID:10521 KEGG:hsa:10521
UCSC:uc003avx.4 CTD:10521 GeneCards:GC22M038879 HGNC:HGNC:2740
HPA:CAB024908 MIM:608469 neXtProt:NX_Q92841 PharmGKB:PA27206
HOVERGEN:HBG015893 InParanoid:Q92841 KO:K13178 ChiTaRS:DDX17
GenomeRNAi:10521 NextBio:39902 ArrayExpress:Q92841 Bgee:Q92841
CleanEx:HS_DDX17 Genevestigator:Q92841 GermOnline:ENSG00000100201
GO:GO:2001014 Uniprot:Q92841
Length = 729
Score = 508 (183.9 bits), Expect = 5.1e-47, P = 5.1e-47
Identities = 125/386 (32%), Positives = 209/386 (54%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F N V + + + PTPIQ + PL LSG D+V +A+TGSGKT A+L+P +
Sbjct: 173 FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVH 232
Query: 85 LNQ--HVPQG-GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
+N ++ +G G L+L+PTR+LA Q + + G+ + L+ + + GG Q +L
Sbjct: 233 INHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLE 292
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ +I IATPGRL+ L E +L+ Y+V DEAD + MGF Q+ KI+ Q+ +RQ
Sbjct: 293 RGVEICIATPGRLIDFL-ESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 351
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRL-DVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
TL++SAT P + + A+ LRD + + +++ + ++ + EK L+ ++
Sbjct: 352 TLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLME 411
Query: 261 EHISS-DQQTLIFVSTKHHVEFLNVLFREEGLEPSVC-YGDMDQDARKIHVSRFRARKTM 318
E ++ + +T+IFV TK + L R +G P++C +GD Q R ++ FR+ K
Sbjct: 412 EIMAEKENKTIIFVETKRRCDDLTRRMRRDGW-PAMCIHGDKSQPERDWVLNEFRSGKAP 470
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYL 378
LI TDVA+RG+D+ + VIN+D+P + +VHR+ ++F T ++
Sbjct: 471 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQA 530
Query: 379 LDLHLFLSKPIRAAPSEEEVLLDMDG 404
+L L + +A + L+D G
Sbjct: 531 RELIKVLEEANQAINPKLMQLVDHRG 556
>UNIPROTKB|H3BLZ8 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IEA] [GO:0072358
"cardiovascular system development" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0009791
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:Z97056 HGNC:HGNC:2740
ChiTaRS:DDX17 GO:GO:0072358 ProteinModelPortal:H3BLZ8 SMR:H3BLZ8
Ensembl:ENST00000396821 Bgee:H3BLZ8 Uniprot:H3BLZ8
Length = 731
Score = 508 (183.9 bits), Expect = 5.3e-47, P = 5.3e-47
Identities = 125/386 (32%), Positives = 209/386 (54%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F N V + + + PTPIQ + PL LSG D+V +A+TGSGKT A+L+P +
Sbjct: 173 FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVH 232
Query: 85 LNQ--HVPQG-GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
+N ++ +G G L+L+PTR+LA Q + + G+ + L+ + + GG Q +L
Sbjct: 233 INHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLE 292
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ +I IATPGRL+ L E +L+ Y+V DEAD + MGF Q+ KI+ Q+ +RQ
Sbjct: 293 RGVEICIATPGRLIDFL-ESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 351
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRL-DVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
TL++SAT P + + A+ LRD + + +++ + ++ + EK L+ ++
Sbjct: 352 TLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLME 411
Query: 261 EHISS-DQQTLIFVSTKHHVEFLNVLFREEGLEPSVC-YGDMDQDARKIHVSRFRARKTM 318
E ++ + +T+IFV TK + L R +G P++C +GD Q R ++ FR+ K
Sbjct: 412 EIMAEKENKTIIFVETKRRCDDLTRRMRRDGW-PAMCIHGDKSQPERDWVLNEFRSGKAP 470
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYL 378
LI TDVA+RG+D+ + VIN+D+P + +VHR+ ++F T ++
Sbjct: 471 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQA 530
Query: 379 LDLHLFLSKPIRAAPSEEEVLLDMDG 404
+L L + +A + L+D G
Sbjct: 531 RELIKVLEEANQAINPKLMQLVDHRG 556
>UNIPROTKB|Q4R6M5 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9541 "Macaca fascicularis" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014
HSSP:P10081 EMBL:AB169157 ProteinModelPortal:Q4R6M5 PRIDE:Q4R6M5
Uniprot:Q4R6M5
Length = 614
Score = 494 (179.0 bits), Expect = 5.8e-47, P = 5.8e-47
Identities = 119/363 (32%), Positives = 193/363 (53%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F N NV I R+ + PT IQ + P+ LSG D+V +A+TGSGKT ++L+P +
Sbjct: 96 FYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVH 155
Query: 85 LNQHVP---QG-GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
+N H P +G G L+L+PTR+LA Q + E R L+ + + GG Q +L
Sbjct: 156 IN-HQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDL 214
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
+ +I IATPGRL+ L E +L+ Y+V DEAD + MGF Q+ KI+ Q+ +R
Sbjct: 215 ERGVEICIATPGRLIDFL-ECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 273
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLD-VDTKISPDLKLAFFTLRQEEKHAALLYMI 259
QTL++SAT P + + A+ L+D + + ++ + ++ EK L+ ++
Sbjct: 274 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 333
Query: 260 REHISS-DQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
E +S + +T++FV TK + L R +G +GD Q R ++ F+ K
Sbjct: 334 EEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERGWVLNEFKHGKAP 393
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYL 378
LI TDVA+RG+D+ + VIN+D+P + ++HR+ ++F T ++ +
Sbjct: 394 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQV 453
Query: 379 LDL 381
DL
Sbjct: 454 SDL 456
>UNIPROTKB|F1PID8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:QQFPQPP EMBL:AAEX03007314
Ensembl:ENSCAFT00000002162 Uniprot:F1PID8
Length = 736
Score = 508 (183.9 bits), Expect = 6.0e-47, P = 6.0e-47
Identities = 125/386 (32%), Positives = 209/386 (54%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F N V + + + PTPIQ + PL LSG D+V +A+TGSGKT A+L+P +
Sbjct: 175 FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVH 234
Query: 85 LNQ--HVPQG-GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
+N ++ +G G L+L+PTR+LA Q + + G+ + L+ + + GG Q +L
Sbjct: 235 INHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLE 294
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ +I IATPGRL+ L E +L+ Y+V DEAD + MGF Q+ KI+ Q+ +RQ
Sbjct: 295 RGVEICIATPGRLIDFL-ESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 353
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRL-DVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
TL++SAT P + + A+ LRD + + +++ + ++ + EK L+ ++
Sbjct: 354 TLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLME 413
Query: 261 EHISS-DQQTLIFVSTKHHVEFLNVLFREEGLEPSVC-YGDMDQDARKIHVSRFRARKTM 318
E ++ + +T+IFV TK + L R +G P++C +GD Q R ++ FR+ K
Sbjct: 414 EIMAEKENKTIIFVETKRRCDDLTRRMRRDGW-PAMCIHGDKSQPERDWVLNEFRSGKAP 472
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYL 378
LI TDVA+RG+D+ + VIN+D+P + +VHR+ ++F T ++
Sbjct: 473 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQA 532
Query: 379 LDLHLFLSKPIRAAPSEEEVLLDMDG 404
+L L + +A + L+D G
Sbjct: 533 RELIKVLEEANQAINPKLMQLVDHRG 558
>UNIPROTKB|F1SKQ0 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 GO:GO:0072358 OMA:QQFPQPP
EMBL:FP102457 Ensembl:ENSSSCT00000000110 Uniprot:F1SKQ0
Length = 736
Score = 508 (183.9 bits), Expect = 6.0e-47, P = 6.0e-47
Identities = 125/386 (32%), Positives = 209/386 (54%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F N V + + + PTPIQ + PL LSG D+V +A+TGSGKT A+L+P +
Sbjct: 175 FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVH 234
Query: 85 LNQ--HVPQG-GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
+N ++ +G G L+L+PTR+LA Q + + G+ + L+ + + GG Q +L
Sbjct: 235 INHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLE 294
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ +I IATPGRL+ L E +L+ Y+V DEAD + MGF Q+ KI+ Q+ +RQ
Sbjct: 295 RGVEICIATPGRLIDFL-ESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQ 353
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRL-DVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
TL++SAT P + + A+ LRD + + +++ + ++ + EK L+ ++
Sbjct: 354 TLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLME 413
Query: 261 EHISS-DQQTLIFVSTKHHVEFLNVLFREEGLEPSVC-YGDMDQDARKIHVSRFRARKTM 318
E ++ + +T+IFV TK + L R +G P++C +GD Q R ++ FR+ K
Sbjct: 414 EIMAEKENKTIIFVETKRRCDDLTRRMRRDGW-PAMCIHGDKSQPERDWVLNEFRSGKAP 472
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYL 378
LI TDVA+RG+D+ + VIN+D+P + +VHR+ ++F T ++
Sbjct: 473 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQA 532
Query: 379 LDLHLFLSKPIRAAPSEEEVLLDMDG 404
+L L + +A + L+D G
Sbjct: 533 RELIKVLEEANQAINPKLMQLVDHRG 558
>POMBASE|SPBC543.06c [details] [associations]
symbol:dbp8 "ATP-dependent RNA helicase Dbp8
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPBC543.06c GO:GO:0005524 GO:GO:0005730
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ OrthoDB:EOG4PP1RW
RefSeq:NP_596794.1 ProteinModelPortal:Q9HGM5 STRING:Q9HGM5
EnsemblFungi:SPBC543.06c.1 GeneID:2541069 KEGG:spo:SPBC543.06c
NextBio:20802183 Uniprot:Q9HGM5
Length = 453
Score = 467 (169.5 bits), Expect = 7.6e-47, Sum P(2) = 7.6e-47
Identities = 122/361 (33%), Positives = 197/361 (54%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L +SP + +K PT IQ + IL G + + A+TGSGKTAAF +P++++
Sbjct: 9 FSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEK 68
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
++ P G + ALIL+PTR+LA+Q + LG +L+ +L+VGG M Q +L++ P
Sbjct: 69 WSKD-PSG-IFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSKRP 126
Query: 145 DIIIATPGRLMHHL-SEVEDM--SLKSVEYVVFDEADCLFGMGFAEQLHKILGQL--SEN 199
+++ATPGRL + S E+ L+ ++++V DEAD L FA+ L L SE+
Sbjct: 127 HVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFSVLPASED 186
Query: 200 RQTLLFSATLPSALAEFAKAGLRD--PHLVRLDVDT-KIS-PD-LKLAFFTLRQEEKHAA 254
RQTLLF+AT+ A+ + ++ P L +V+T IS P L+ ++ + + + A
Sbjct: 187 RQTLLFTATVTDAIRQLKYQPQKNNKPPLWLYEVETDNISVPSTLQQSYIFVSSQVREAY 246
Query: 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRA 314
L++++ ++ + +IFV+ E + + R L + + +M Q R + RFRA
Sbjct: 247 LVHLLTIPENAKKSAIIFVNRTRTAELIYSILRLLELRVTELHSEMVQRERINSLGRFRA 306
Query: 315 RKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSED 374
L+ TDVA+RG+DIP + VIN+D P P ++HRV S VT D
Sbjct: 307 EAAKILVATDVASRGLDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESISIVTERD 366
Query: 375 M 375
+
Sbjct: 367 V 367
Score = 49 (22.3 bits), Expect = 7.6e-47, Sum P(2) = 7.6e-47
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 543 VHEKIINLVH--QQRSSKSMEKEVEPEADSLMAKEIKETHGSKRKA 586
V E+ ++LVH + R + E E +++ M + IKE +KR+A
Sbjct: 362 VTERDVDLVHAIEDRVGTKLS-EYEHVSENKMLEYIKEVTDAKRQA 406
Score = 40 (19.1 bits), Expect = 6.7e-46, Sum P(2) = 6.7e-46
Identities = 15/56 (26%), Positives = 30/56 (53%)
Query: 655 KLNNGERVSASGKV--VKTESGAKVKAT----KTGIYKKWKERSHKKVYLKGASNE 704
KL+ E VS + + +K + AK +A+ G ++ ++R+ K++ G SN+
Sbjct: 380 KLSEYEHVSENKMLEYIKEVTDAKRQASLEMIDRGFGERRQKRNEKRLMANGISNK 435
>UNIPROTKB|Q485I3 [details] [associations]
symbol:dbpA "ATP-dependent RNA helicase DbpA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
Length = 468
Score = 473 (171.6 bits), Expect = 8.2e-47, Sum P(2) = 8.2e-47
Identities = 119/388 (30%), Positives = 199/388 (51%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F SL+L ++ + + GY+ TPIQ KT+P +L G DV+ A+TGSGKTAAF + +L +
Sbjct: 12 FSSLSLKQDLVKNLSSLGYEQMTPIQAKTLPELLKGKDVIGEAKTGSGKTAAFGLALLNK 71
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGR-YTDLRISLLVGGDSMESQFEELAQN 143
L V + ++++++ PTR+LA Q K ++L R +++I L GG Q L
Sbjct: 72 LE--VKKFRIQSMVICPTRELADQVAKELRKLARGIHNIKILTLCGGTPFGPQIGSLEHG 129
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
+I+ TPGRL H+ + + L ++ +V DEAD + MGF L I+G+ +RQTL
Sbjct: 130 AHVIVGTPGRLEEHVIK-GTLQLDNLNLLVLDEADRMLEMGFQAALDNIVGRTPLDRQTL 188
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH--AALLYMIRE 261
LFSAT P + +++ + DP +V++ ++ + FF + ++ A L ++
Sbjct: 189 LFSATFPDQIKSISESIMTDPVMVKI-ASSEDQSTISQKFFKVGNDDDRLDALRLLLLGN 247
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ S T IF +TK + + +G +GD++Q R + RF + L+
Sbjct: 248 QVES---TAIFCNTKKETQQVADALHFDGFSVLALHGDLEQRDRDQTLLRFANKSASILV 304
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDL 381
TDVAARG+DI LD VIN+ ++ VHR+ +S + ++ + L
Sbjct: 305 ATDVAARGLDIDSLDLVINYHIARDSEVHVHRIGRTGRAGSTGIAYSLFSDKESYKVGLL 364
Query: 382 HLFLSKPIRAAPSEEEVLLDMDGVMSKI 409
+L I P +L + +K+
Sbjct: 365 EDYLEAVITPEPLPSLAVLSNERPQAKM 392
Score = 42 (19.8 bits), Expect = 8.2e-47, Sum P(2) = 8.2e-47
Identities = 17/56 (30%), Positives = 27/56 (48%)
Query: 657 NNGERVSASGKVVKTESGAKVKATKTGIYKKWKERSHKKVYLKGASNEGNAEETTS 712
+NG + S GK+ ++ A V TK + K+ S K +KG + NA T+
Sbjct: 417 DNGVQGSQVGKISVLDNKAYVAVTKAALNLALKKISKGK--MKGRTF--NARHLTN 468
>TIGR_CMR|CPS_1540 [details] [associations]
symbol:CPS_1540 "ATP-dependent RNA helicase DbpA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0019843 "rRNA binding" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
Length = 468
Score = 473 (171.6 bits), Expect = 8.2e-47, Sum P(2) = 8.2e-47
Identities = 119/388 (30%), Positives = 199/388 (51%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F SL+L ++ + + GY+ TPIQ KT+P +L G DV+ A+TGSGKTAAF + +L +
Sbjct: 12 FSSLSLKQDLVKNLSSLGYEQMTPIQAKTLPELLKGKDVIGEAKTGSGKTAAFGLALLNK 71
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGR-YTDLRISLLVGGDSMESQFEELAQN 143
L V + ++++++ PTR+LA Q K ++L R +++I L GG Q L
Sbjct: 72 LE--VKKFRIQSMVICPTRELADQVAKELRKLARGIHNIKILTLCGGTPFGPQIGSLEHG 129
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
+I+ TPGRL H+ + + L ++ +V DEAD + MGF L I+G+ +RQTL
Sbjct: 130 AHVIVGTPGRLEEHVIK-GTLQLDNLNLLVLDEADRMLEMGFQAALDNIVGRTPLDRQTL 188
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH--AALLYMIRE 261
LFSAT P + +++ + DP +V++ ++ + FF + ++ A L ++
Sbjct: 189 LFSATFPDQIKSISESIMTDPVMVKI-ASSEDQSTISQKFFKVGNDDDRLDALRLLLLGN 247
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ S T IF +TK + + +G +GD++Q R + RF + L+
Sbjct: 248 QVES---TAIFCNTKKETQQVADALHFDGFSVLALHGDLEQRDRDQTLLRFANKSASILV 304
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDL 381
TDVAARG+DI LD VIN+ ++ VHR+ +S + ++ + L
Sbjct: 305 ATDVAARGLDIDSLDLVINYHIARDSEVHVHRIGRTGRAGSTGIAYSLFSDKESYKVGLL 364
Query: 382 HLFLSKPIRAAPSEEEVLLDMDGVMSKI 409
+L I P +L + +K+
Sbjct: 365 EDYLEAVITPEPLPSLAVLSNERPQAKM 392
Score = 42 (19.8 bits), Expect = 8.2e-47, Sum P(2) = 8.2e-47
Identities = 17/56 (30%), Positives = 27/56 (48%)
Query: 657 NNGERVSASGKVVKTESGAKVKATKTGIYKKWKERSHKKVYLKGASNEGNAEETTS 712
+NG + S GK+ ++ A V TK + K+ S K +KG + NA T+
Sbjct: 417 DNGVQGSQVGKISVLDNKAYVAVTKAALNLALKKISKGK--MKGRTF--NARHLTN 468
>DICTYBASE|DDB_G0293064 [details] [associations]
symbol:DDB_G0293064 species:44689 "Dictyostelium
discoideum" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0293064 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AAFI02000199
RefSeq:XP_629301.1 ProteinModelPortal:Q54CB8
EnsemblProtists:DDB0191757 GeneID:8629024 KEGG:ddi:DDB_G0293064
InParanoid:Q54CB8 OMA:VLYWSAT Uniprot:Q54CB8
Length = 573
Score = 492 (178.3 bits), Expect = 9.9e-47, P = 9.9e-47
Identities = 122/405 (30%), Positives = 221/405 (54%)
Query: 26 ESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRL 85
ES+ + + +K ++ PTP+Q P+ LSG+D++ +++TGSGKT +F++P ++ +
Sbjct: 143 ESVPFQSTIKNFLSKK-FEKPTPVQSLGWPIALSGSDMLGISKTGSGKTLSFILPAIEHI 201
Query: 86 NQHVPQG---GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
Q G L+++PTR+LA Q + ++ R ++ I+ + GG SQ +L++
Sbjct: 202 LAQPRQSYYPGPSVLVVAPTRELANQINQEAEQYLRLVNIEIATIYGGAPRRSQQLQLSR 261
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
P I++ TPGR++ + E D+SLK++ ++V DEAD L MGF +Q+ I + +RQ
Sbjct: 262 RPKIVVGTPGRIIDFM-ESGDLSLKNISFLVVDEADRLMEMGFEQQIDGIFNSIRPDRQV 320
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTK---ISPDLKLAFFTLRQE-EKHAALLYM 258
L +SAT P ++ FA+ +R P +RL + + + ++ F + + +K AL+
Sbjct: 321 LYWSATWPKKVSSFAEKHIRTP--IRLQIGSSQLTANKNISQKFKIVPTDADKVDALMDT 378
Query: 259 IREHISSDQ--QTLIFVSTKHHVEFLNVLFREEG--LEPSVCYGDMDQDARKIHVSRFRA 314
+ E S+D+ QTLIF TK + L + G + +GD+DQ+ R+ V F+
Sbjct: 379 LGEIYSADEKAQTLIFTMTKKGADTLKHYIQSNGDNVRIDTLHGDVDQNRRERIVQDFKN 438
Query: 315 RKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTS-- 372
++ ++ TDVA+RG+DI + +VIN+ P + +VHR+ S +++
Sbjct: 439 KRLDIVVATDVASRGLDIKGISHVINFSLPSDCETYVHRIGRTGRAGALGTSHSILSNNS 498
Query: 373 -EDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANG 416
+DM + DL L + + PSE LD++ + ++ + NG
Sbjct: 499 LDDMELVGDLTNLLQRSEQEVPSE---FLDINAIRNRQNMKGGNG 540
>UNIPROTKB|A4QSS5 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase DBP2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 EMBL:CM001233 GO:GO:0003723
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OrthoDB:EOG47SWP6 RefSeq:XP_003712846.1
ProteinModelPortal:A4QSS5 EnsemblFungi:MGG_16901T0 GeneID:12985738
KEGG:mgr:MGG_16901 Uniprot:A4QSS5
Length = 548
Score = 492 (178.3 bits), Expect = 9.9e-47, P = 9.9e-47
Identities = 116/364 (31%), Positives = 192/364 (52%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ V +K +G+ PT IQ + P+ LSG DVV +A TGSGKT + +P +
Sbjct: 127 FDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVH 186
Query: 85 LNQH---VPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
+N P G LIL+PTR+LA+Q + G+ + +R + + GG Q +L+
Sbjct: 187 INAQPLLAPGDGPIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDLS 246
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ ++ IATPGRL+ L E +L+ V Y+V DEAD + MGF Q+ KI+GQ+ +RQ
Sbjct: 247 RGVEVCIATPGRLIDML-ESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQ 305
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRL-DVDTKISPDLKLAFFTLRQEEKHAALL-YM- 258
TL++SAT P + A L+D V + +D + + + + EK ++ +M
Sbjct: 306 TLMWSATWPKEVRNMAADFLQDFIQVNIGSLDLSANHRITQIVEVVSESEKRDRMIRHME 365
Query: 259 -IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKT 317
+ + S + LIFV TK + + R++G +GD Q+ R + +F+ K+
Sbjct: 366 KVMDGKDSKNKILIFVGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKS 425
Query: 318 MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAY 377
++ TDVA+RGID+ + +V+N+D+P + ++HR+ +F T+E+
Sbjct: 426 PIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTENSKQ 485
Query: 378 LLDL 381
DL
Sbjct: 486 ARDL 489
>MGI|MGI:1914192 [details] [associations]
symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 18"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914192
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
GeneTree:ENSGT00680000100037 CTD:8886 HOVERGEN:HBG105702
OrthoDB:EOG4894MF EMBL:AK075864 EMBL:AK019845 EMBL:BC028246
EMBL:BC103776 IPI:IPI00459381 RefSeq:NP_080136.2 UniGene:Mm.44219
ProteinModelPortal:Q8K363 SMR:Q8K363 STRING:Q8K363
PhosphoSite:Q8K363 PaxDb:Q8K363 PRIDE:Q8K363
Ensembl:ENSMUST00000001724 GeneID:66942 KEGG:mmu:66942
InParanoid:Q8K363 NextBio:323084 Bgee:Q8K363 CleanEx:MM_DDX18
Genevestigator:Q8K363 GermOnline:ENSMUSG00000001674 Uniprot:Q8K363
Length = 660
Score = 492 (178.3 bits), Expect = 9.9e-47, P = 9.9e-47
Identities = 118/341 (34%), Positives = 196/341 (57%)
Query: 25 FESL-NL-SPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPML 82
F SL NL + N +AI+ G+K T IQ K++ +L G D++A A+TGSGKT AFL+P++
Sbjct: 169 FASLSNLVNENTLKAIEEMGFKRMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPVI 228
Query: 83 QRLNQ--HVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
+ + + +P+ G LILSPTR+LA+QT KEL + L++GG + ++ ++L
Sbjct: 229 ELIVKLKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEVQKL 288
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
+II+ATPGRL+ H+ K+++ +V DEAD + +GF E+L +I+ L R
Sbjct: 289 LNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPARR 348
Query: 201 QTLLFSATLPSALAEFAKAGLR-DPHLVRLDVDTKISP--DLKLAFFTLRQEEKHAALLY 257
QT+LFSAT + + A+ L+ +P V +D D +++ L+ + E++ L
Sbjct: 349 QTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKEVATVDGLEQGYVVCPSEKRFLLLFT 408
Query: 258 MIREHISSDQQTLIF----VSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFR 313
++++ ++ ++F +S K+H E LN + L +G Q+ R +F
Sbjct: 409 FLKKN--RKKKVMVFFSSCMSVKYHYELLNYI----DLPVLAIHGKQKQNKRTTTFFQFC 462
Query: 314 ARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRV 354
+ L+ TDVAARG+DIP +D ++ +D P PK ++HRV
Sbjct: 463 NADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRV 503
>TAIR|locus:2035741 [details] [associations]
symbol:RH20 "RNA helicase 20" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AC073944 EMBL:AY062745 EMBL:AY128786 EMBL:AJ010470
IPI:IPI00528901 PIR:B96593 PIR:T51345 RefSeq:NP_175911.1
UniGene:At.20425 ProteinModelPortal:Q9C718 SMR:Q9C718 PaxDb:Q9C718
PRIDE:Q9C718 ProMEX:Q9C718 EnsemblPlants:AT1G55150.1 GeneID:841958
KEGG:ath:AT1G55150 GeneFarm:937 TAIR:At1g55150 InParanoid:Q9C718
OMA:CANHNIL PhylomeDB:Q9C718 ProtClustDB:CLSN2682455
Genevestigator:Q9C718 GermOnline:AT1G55150 Uniprot:Q9C718
Length = 501
Score = 492 (178.3 bits), Expect = 9.9e-47, P = 9.9e-47
Identities = 112/361 (31%), Positives = 194/361 (53%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F + V +K+ G+ PTPIQ + P+ + G D++ +A TGSGKT ++L+P +
Sbjct: 101 FRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVH 160
Query: 85 LNQH--VPQG-GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
+N + G G L+L+PTR+LA+Q + + G + ++ + + GG Q +L
Sbjct: 161 VNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQ 220
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ +I+IATPGRL+ + E + +L+ V Y+V DEAD + MGF Q+ KI+ + +RQ
Sbjct: 221 KGVEIVIATPGRLID-MMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQ 279
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRL-DVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
TL +SAT P + + +K L +P+ V + D K + ++ + + +K+ L+ ++
Sbjct: 280 TLYWSATWPKEVEQLSKKFLYNPYKVIIGSSDLKANRAIRQIVDVISESQKYNKLVKLL- 338
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
E I + L+F+ TK + + R +G +GD Q R +S FR+ K+ +
Sbjct: 339 EDIMDGSRILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIM 398
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLD 380
TDVAARG+D+ + VIN+DFP + +VHR+ ++F T + + +
Sbjct: 399 TATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVANARFAKE 458
Query: 381 L 381
L
Sbjct: 459 L 459
>UNIPROTKB|Q4K4H4 [details] [associations]
symbol:rhlE_2 "Putative ATP-dependent RNA helicase"
species:220664 "Pseudomonas protegens Pf-5" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006139 GO:GO:0003676
EMBL:CP000076 GenomeReviews:CP000076_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:DGDLMGF ProtClustDB:CLSK865855 RefSeq:YP_262859.1
ProteinModelPortal:Q4K4H4 GeneID:3480173 KEGG:pfl:PFL_5801
PATRIC:19881109 BioCyc:PFLU220664:GIX8-5841-MONOMER Uniprot:Q4K4H4
Length = 622
Score = 491 (177.9 bits), Expect = 1.3e-46, P = 1.3e-46
Identities = 120/373 (32%), Positives = 188/373 (50%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F SL LS + AI+ GY PTP+Q++ +P +L G D++ A+TG+GKT F +P+L+R
Sbjct: 3 FASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILER 62
Query: 85 L--NQHVPQG---GVR---ALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQ 136
L N H + G R L+L+PTR+LA Q K R + + GG M Q
Sbjct: 63 LFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMNPQ 122
Query: 137 FEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL 196
+ +A+ D+++A PGRL+ L+ + L VE +V DEAD + MGF + K+L +L
Sbjct: 123 VQAMARGVDVLVACPGRLLD-LAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARL 181
Query: 197 SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALL 256
RQ LLFSAT + + A L +P + + ++ F L K A L
Sbjct: 182 PAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALLA 241
Query: 257 YMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK 316
++I + +Q L+F TKH L + GL +G+ Q+AR ++ F+A +
Sbjct: 242 HLITA--GAWEQVLVFTRTKHGANRLAEYLDKHGLSAVAIHGNKSQNARTKALADFKAGE 299
Query: 317 TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMA 376
L+ TD+AARG+DI L +V+N++ P + +VHR+ S V ++
Sbjct: 300 VRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEK 359
Query: 377 YLLDLHLFLSKPI 389
L + + I
Sbjct: 360 LLKSIERMTKQKI 372
>UNIPROTKB|D4A824 [details] [associations]
symbol:Ddx18 "Protein Ddx18" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1549712 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
EMBL:AC128353 IPI:IPI00393022 Ensembl:ENSRNOT00000028172
ArrayExpress:D4A824 Uniprot:D4A824
Length = 662
Score = 491 (177.9 bits), Expect = 1.3e-46, P = 1.3e-46
Identities = 117/341 (34%), Positives = 196/341 (57%)
Query: 25 FESL-NL-SPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPML 82
F SL NL + N +AI+ G+K T IQ K++ +L G D++A A+TGSGKT AFL+P++
Sbjct: 171 FASLSNLVNENTLKAIEEMGFKHMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPVI 230
Query: 83 QRLNQ--HVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
+ + + +P+ G LILSPTR+LA+QT KEL + L++GG + ++ ++L
Sbjct: 231 ELIVKLKFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEVQKL 290
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
+I++ATPGRL+ H+ K+++ +V DEAD + +GF E+L +I+ L R
Sbjct: 291 LNGINIVVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPARR 350
Query: 201 QTLLFSATLPSALAEFAKAGLR-DPHLVRLDVDTKISP--DLKLAFFTLRQEEKHAALLY 257
QT+LFSAT + + A+ L+ +P V +D D +++ L+ + E++ L
Sbjct: 351 QTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKEVATVDGLEQGYVVCPSEKRFLLLFT 410
Query: 258 MIREHISSDQQTLIF----VSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFR 313
++++ ++ ++F +S K+H E LN + L +G Q+ R +F
Sbjct: 411 FLKKN--RKKKVMVFFSSCMSVKYHYELLNYI----DLPVLAIHGKQKQNKRTTTFFQFC 464
Query: 314 ARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRV 354
+ L+ TDVAARG+DIP +D ++ +D P PK ++HRV
Sbjct: 465 NADSGILLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRV 505
>TAIR|locus:2119176 [details] [associations]
symbol:AT4G33370 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0046872 GO:GO:0008270 EMBL:AL035678 EMBL:AL161583
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13116 HOGENOM:HOG000268792 ProtClustDB:CLSN2685494
IPI:IPI00545227 PIR:T05988 RefSeq:NP_195063.1 UniGene:At.65448
ProteinModelPortal:Q9SZB4 SMR:Q9SZB4 PaxDb:Q9SZB4 PRIDE:Q9SZB4
EnsemblPlants:AT4G33370.1 GeneID:829474 KEGG:ath:AT4G33370
GeneFarm:1022 TAIR:At4g33370 InParanoid:Q9SZB4 OMA:MEETETI
PhylomeDB:Q9SZB4 Genevestigator:Q9SZB4 GermOnline:AT4G33370
Uniprot:Q9SZB4
Length = 542
Score = 491 (177.9 bits), Expect = 1.3e-46, P = 1.3e-46
Identities = 134/405 (33%), Positives = 212/405 (52%)
Query: 31 SPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPML-----QRL 85
SP + R +K KG PTPIQ + +P++LSG D++ +A TGSGKT F++PM+ + +
Sbjct: 106 SP-LLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEI 164
Query: 86 NQHVPQG-GVRALILSPTRDLALQTL----KFTKELGR--YTDLRISLLVGGDSMESQFE 138
+ G G AL++ P+R+LA QT +F L Y LR L +GG M SQ +
Sbjct: 165 MMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLD 224
Query: 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198
+ + I++ATPGRL L++ + MSL + + DEAD L +GF + + +
Sbjct: 225 VVKKGVHIVVATPGRLKDILAK-KKMSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFKS 283
Query: 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258
RQTLLFSAT+P+ + FA + L P V + + D+ ++QE K LL
Sbjct: 284 QRQTLLFSATMPAKIQIFATSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLEC 343
Query: 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
+++ + LIF K V+ ++ +G+E +G DQ+ R +S F+A K
Sbjct: 344 LQK---TTPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKD 400
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVT-SEDMAY 377
L+ TDVA++G+D P + +VIN+D P + + +VHR+ +F+ ++
Sbjct: 401 VLVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIATTFINKNQSEIT 460
Query: 378 LLDL-HLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYG 421
LLDL HL R P VL +++G M + + IAN + G
Sbjct: 461 LLDLKHLLQEAKQRIPP----VLAELNGPMEETE-TIANASGVKG 500
>ZFIN|ZDB-GENE-040120-6 [details] [associations]
symbol:eif4a1b "eukaryotic translation initiation
factor 4A, isoform 1B" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0006413 "translational initiation" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-040120-6 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG107989 OrthoDB:EOG4640C1 EMBL:BC153507
IPI:IPI00509685 UniGene:Dr.104803 ProteinModelPortal:A8E590
SMR:A8E590 STRING:A8E590 ArrayExpress:A8E590 Uniprot:A8E590
Length = 429
Score = 491 (177.9 bits), Expect = 1.3e-46, P = 1.3e-46
Identities = 110/370 (29%), Positives = 199/370 (53%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ +NL + R I G++ P+ IQ++ + + G DV+A A++G+GKTA F + +LQ+
Sbjct: 57 FDDMNLRETLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 116
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL-AQN 143
++ + G +AL+L+PTR+LA Q K LG Y +GG ++ ++ ++L A+
Sbjct: 117 ID--IELKGTQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEVQKLQAEA 174
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
P I++ TPGR+ L+ + +S K ++ V DEAD + GF +Q+++I +LS + Q +
Sbjct: 175 PHIVVGTPGRVYDMLNR-KFLSSKYIKMFVLDEADEMLSRGFKDQIYEIFQKLSTSIQVV 233
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
L SAT+P+ + + +R+P + + + ++ + + +EE L + E +
Sbjct: 234 LLSATMPAEVLDVTTKFMREPVRILVKKEELTLEGIRQFYINVEKEEWKLDTLCDLYETL 293
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+ Q +IF++T+ V++L S +GDMDQ R + + FR+ + LI T
Sbjct: 294 TITQ-AVIFINTRRKVDWLTEKMHARDFTVSALHGDMDQKDRDLIMREFRSGSSRVLITT 352
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHL 383
D+ ARGID+ + VIN+D P + ++HR+ + VT +D L D+
Sbjct: 353 DLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEDDKRTLRDIET 412
Query: 384 FLSKPIRAAP 393
F + + P
Sbjct: 413 FYNTTVEEMP 422
>ZFIN|ZDB-GENE-030131-667 [details] [associations]
symbol:ddx46 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 46" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IMP] [GO:0031017 "exocrine
pancreas development" evidence=IMP] [GO:0007420 "brain development"
evidence=IMP] [GO:0048546 "digestive tract morphogenesis"
evidence=IMP] [GO:0072576 "liver morphogenesis" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-667
GO:GO:0005524 GO:GO:0007420 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0048546
GO:GO:0008026 GO:GO:0031017 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF GO:GO:0072576
EMBL:CU302316 IPI:IPI00865887 Ensembl:ENSDART00000099265
ArrayExpress:F1RA00 Bgee:F1RA00 Uniprot:F1RA00
Length = 1035
Score = 509 (184.2 bits), Expect = 1.4e-46, Sum P(2) = 1.4e-46
Identities = 122/375 (32%), Positives = 195/375 (52%)
Query: 30 LSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV 89
+S V A+K+ Y+ PTPIQ + +P I+SG D++ +A+TGSGKT AFL+PM + +
Sbjct: 364 ISMKVLNALKKHNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHILDQR 423
Query: 90 PQG---GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDI 146
P G G A+I++PTR+LALQ K K+ + LR+ + GG + Q EL + +I
Sbjct: 424 PVGEAEGPLAVIMTPTRELALQITKECKKFSKSLALRVVCVYGGTGISEQIAELKRGAEI 483
Query: 147 IIATPGRLMHHLSEVEDM--SLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
I+ TPGR++ L +L+ V YVV DEAD +F MGF Q+ +I+ + +RQT++
Sbjct: 484 IVCTPGRMIDMLGANNGRVTNLRRVTYVVIDEADRMFDMGFEPQVMRIVDNVRPDRQTVM 543
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT P + A+ L P V++ + + D++ + +E+K LL ++ H
Sbjct: 544 FSATFPRTMEALARRILSKPVEVQVGGRSVVCSDVEQHVIVIEEEKKFLKLLEILG-HYQ 602
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
+IFV + H + L + +G +DQ R ++ F+ L+ T
Sbjct: 603 EKGSVIIFVDKQEHADGLLKDLMKASYPCMSLHGGIDQYDRDSIINDFKNGACRLLVATS 662
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHLF 384
VAARG+D+ L V+N+ P + +VHR ++F+T Y D+
Sbjct: 663 VAARGLDVKQLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEGQARYSGDILKA 722
Query: 385 LSKPIRAAPSEEEVL 399
L + P+E E L
Sbjct: 723 LELSGSSVPAELEQL 737
Score = 45 (20.9 bits), Expect = 1.4e-46, Sum P(2) = 1.4e-46
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 657 NNGERVSASGKVVKTESGAKVKATK 681
N E+ A GK++K+ SG K K
Sbjct: 740 NFKEQQKAEGKIIKSSSGFSGKGFK 764
>UNIPROTKB|Q8EJQ5 [details] [associations]
symbol:rhlB "ATP-dependent RNA helicase RhlB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_00661 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732 ProtClustDB:PRK04837
RefSeq:NP_716045.1 ProteinModelPortal:Q8EJQ5 GeneID:1168284
KEGG:son:SO_0407 PATRIC:23520517 OMA:PANAERQ Uniprot:Q8EJQ5
Length = 439
Score = 490 (177.5 bits), Expect = 1.7e-46, P = 1.7e-46
Identities = 121/384 (31%), Positives = 204/384 (53%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L L P V +A+ G++ TPIQ ++P++L D+ A+TG+GKT AFLV
Sbjct: 11 FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNH 70
Query: 85 L-NQHVPQGGV----RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139
L + +P+G RA+I++PTR+LA+Q K L ++T L++ ++ GG+S + Q +
Sbjct: 71 LLSSSIPEGRQLNQPRAIIMAPTRELAIQIAKDAILLAKHTRLKVGIVYGGESYDVQRKV 130
Query: 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL--S 197
L Q DI+I T GR++ ++ + ++L +++ VV DEAD +F +GF + + + ++ +
Sbjct: 131 LDQGVDILIGTTGRIIDYVRQ-GIINLNAIQAVVLDEADRMFDLGFIKDIRFLFRRMPNA 189
Query: 198 ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLY 257
+ R +LFSATL + E A + DP V + + K S ++K F QE+K LL
Sbjct: 190 DQRLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSKNIKEEIFYPSQEDKMRLLLT 249
Query: 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKT 317
+I E ++ ++F +TKH E L +G + GD+ Q R + +F +
Sbjct: 250 LIEE--DWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTQGQL 307
Query: 318 MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAY 377
L+ TDVAARG+ I + +V N+D P + +VHR+ SF E
Sbjct: 308 DILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFACEEYALN 367
Query: 378 LLDLHLFLSKPIRAAPSEEEVLLD 401
L + +++ I + + + LLD
Sbjct: 368 LPAIETYINHSIPVSNYDRDALLD 391
>TIGR_CMR|SO_0407 [details] [associations]
symbol:SO_0407 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] HAMAP:MF_00661 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732 ProtClustDB:PRK04837
RefSeq:NP_716045.1 ProteinModelPortal:Q8EJQ5 GeneID:1168284
KEGG:son:SO_0407 PATRIC:23520517 OMA:PANAERQ Uniprot:Q8EJQ5
Length = 439
Score = 490 (177.5 bits), Expect = 1.7e-46, P = 1.7e-46
Identities = 121/384 (31%), Positives = 204/384 (53%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L L P V +A+ G++ TPIQ ++P++L D+ A+TG+GKT AFLV
Sbjct: 11 FADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKTMAFLVATFNH 70
Query: 85 L-NQHVPQGGV----RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139
L + +P+G RA+I++PTR+LA+Q K L ++T L++ ++ GG+S + Q +
Sbjct: 71 LLSSSIPEGRQLNQPRAIIMAPTRELAIQIAKDAILLAKHTRLKVGIVYGGESYDVQRKV 130
Query: 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL--S 197
L Q DI+I T GR++ ++ + ++L +++ VV DEAD +F +GF + + + ++ +
Sbjct: 131 LDQGVDILIGTTGRIIDYVRQ-GIINLNAIQAVVLDEADRMFDLGFIKDIRFLFRRMPNA 189
Query: 198 ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLY 257
+ R +LFSATL + E A + DP V + + K S ++K F QE+K LL
Sbjct: 190 DQRLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSKNIKEEIFYPSQEDKMRLLLT 249
Query: 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKT 317
+I E ++ ++F +TKH E L +G + GD+ Q R + +F +
Sbjct: 250 LIEE--DWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILEQFTQGQL 307
Query: 318 MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAY 377
L+ TDVAARG+ I + +V N+D P + +VHR+ SF E
Sbjct: 308 DILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFACEEYALN 367
Query: 378 LLDLHLFLSKPIRAAPSEEEVLLD 401
L + +++ I + + + LLD
Sbjct: 368 LPAIETYINHSIPVSNYDRDALLD 391
>ZFIN|ZDB-GENE-071022-2 [details] [associations]
symbol:ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
10" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-071022-2 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000074980 EMBL:CR450711 IPI:IPI00898518
Ensembl:ENSDART00000125785 ArrayExpress:F1QMM9 Bgee:F1QMM9
Uniprot:F1QMM9
Length = 875
Score = 494 (179.0 bits), Expect = 1.9e-46, Sum P(2) = 1.9e-46
Identities = 116/337 (34%), Positives = 186/337 (55%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F LS + + Y+ PT IQR+T+ L G DV+ A+TGSGKT AFL+P+L+
Sbjct: 72 FSDFPLSKKTLKGLLEAQYRQPTEIQRQTIGFALQGRDVLGAAKTGSGKTLAFLIPVLEC 131
Query: 85 L--NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
L Q G+ ALI+SPTR+LA QT + +++G+ + L++GG ++ + E++ +
Sbjct: 132 LYREQWTAMDGLGALIISPTRELAYQTFEVLRKVGKNHEFSAGLVIGGKDLKDESEKIHR 191
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
+III TPGRL+ H+ E + +V DEAD + MGFA+ L+ I+ L ++RQT
Sbjct: 192 T-NIIICTPGRLLQHMDETATFHASDLHMLVLDEADRILDMGFADTLNAIVENLPKSRQT 250
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKIS-P-DLKLAFFTLRQEEKHAALLYMIR 260
LLFSAT ++ + A+ L+DP V + K S P L+ + +K L +R
Sbjct: 251 LLFSATQTRSVKDLARLSLKDPEYVWVHEQAKFSTPATLEQNYVVCELHQKVNMLYSFLR 310
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLF-R-EEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
H+ ++ ++F + V++L +F R G+ +G Q +++ V RKT
Sbjct: 311 SHLQ--KKIIVFFACCKEVQYLFRIFCRLRPGISVLALHGKQQQ-MKRVEVYNDFVRKTS 367
Query: 319 -FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRV 354
L TD+AARG+D P ++ V+ +D P ++HRV
Sbjct: 368 AVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRV 404
Score = 58 (25.5 bits), Expect = 1.9e-46, Sum P(2) = 1.9e-46
Identities = 30/108 (27%), Positives = 47/108 (43%)
Query: 567 EADSLMAKEIKETHGSKRKAKTFKDEEYFISSVP--TNHHMEAGLSVRSDQGFGLNRLEA 624
EAD L K K TH ++ + E + T + A ++V+ G +
Sbjct: 589 EADLLTVKSAK-THLIPEVNRSIQVESVLSQDLNLFTTYQHSAVMTVKKKVITGSCVVCF 647
Query: 625 AVLDLVADDSGGLQKQKQVYHWD--KRGKKYIKLNNGERVSASGKVVK 670
VLD AD +KQK+ D K K+ +K+N + + GKVV+
Sbjct: 648 RVLDKDADADAKNRKQKESKFKDAKKIQKRNLKVNTKKVFTEDGKVVQ 695
Score = 49 (22.3 bits), Expect = 1.6e-45, Sum P(2) = 1.6e-45
Identities = 18/65 (27%), Positives = 29/65 (44%)
Query: 567 EADSLMAKEIKETHGSKRKAKTFKDEEYFIS-------SVPTNHHMEAGLSVRSDQGFGL 619
E D L AK E+ + K ++F EE + PT ++ GLS+ D+ L
Sbjct: 809 EEDGLQAKINNESSDAGGKKRSFSSEEQTTQKSRKKPRTEPTVTALDTGLSLAEDEELVL 868
Query: 620 NRLEA 624
+ L +
Sbjct: 869 HLLSS 873
Score = 39 (18.8 bits), Expect = 1.8e-44, Sum P(2) = 1.8e-44
Identities = 23/74 (31%), Positives = 35/74 (47%)
Query: 519 EAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKSMEKEVEPEADSLMAKEIKE 578
EAA+ + + Q D M+ +R + EK H+++ K EK EA +K+ KE
Sbjct: 721 EAAKERLRR--EDQAFDKMEYRRKIKEK-----HREKRLK--EKAARREA----SKQHKE 767
Query: 579 THGSKRKAKTFKDE 592
KRKA D+
Sbjct: 768 ---EKRKADGDDDD 778
>UNIPROTKB|E1BII7 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:DAAA02025231 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:DAAA02025227 EMBL:DAAA02025228
EMBL:DAAA02025229 EMBL:DAAA02025230 IPI:IPI00712097
Ensembl:ENSBTAT00000029077 OMA:ANQNIPE Uniprot:E1BII7
Length = 647
Score = 489 (177.2 bits), Expect = 2.2e-46, P = 2.2e-46
Identities = 121/375 (32%), Positives = 201/375 (53%)
Query: 26 ESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRL 85
++ + P V R I++ G++ PTPIQ + P+IL G D++ +A+TG+GKT ++L+P +
Sbjct: 244 DAFHCYPEVMRNIEKAGFQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPGFIHI 303
Query: 86 N-QHVPQ---GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
+ Q V Q G L+L+PTR+LALQ E Y L+ + GG + Q ++L+
Sbjct: 304 DSQPVLQRARNGPGMLVLTPTRELALQVDAECSEYS-YRGLKSVCIYGGGDRDGQIKDLS 362
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ DIIIATPGRL H L + LKS+ Y+V DEAD + MGF Q+ KIL + +RQ
Sbjct: 363 KGADIIIATPGRL-HDLQMNNFVYLKSITYLVLDEADKMLDMGFEPQIMKILLDVRPDRQ 421
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLD-VDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
T++ SAT P A+ A++ L++P +V + +D + ++EK + + I
Sbjct: 422 TVMTSATWPYAVRRLAQSYLKEPMIVYVGTLDLVAVSTVTQNIIVTTEDEKRSHIQAFI- 480
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
+ +S + +IFVS K + L+ + +G+ +Q R+ + F+ K L
Sbjct: 481 DSMSPKDKVIIFVSRKAVADHLSSDLGIRRISVESLHGNREQSDRERALKSFKTGKVRIL 540
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLD 380
I TD+A+RG+D+ + +V N+DFP + +VHRV + +T D +
Sbjct: 541 IATDLASRGLDVHDVTHVYNYDFPRNIEEYVHRVGRTGRAGRTGVSITLITRNDWKIAGE 600
Query: 381 LHLFLSKPIRAAPSE 395
L L + ++ P +
Sbjct: 601 LINILERANQSVPED 615
>UNIPROTKB|Q8EHT1 [details] [associations]
symbol:SO_1136 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
Uniprot:Q8EHT1
Length = 447
Score = 489 (177.2 bits), Expect = 2.2e-46, P = 2.2e-46
Identities = 129/409 (31%), Positives = 211/409 (51%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L L+ + +A+ + K PT +Q+ +P IL+G D++A+++TGSGKT AF +P+LQ
Sbjct: 19 FAELGLNAALRKALPTR-LKHPTRVQQLAIPAILAGRDLLALSQTGSGKTFAFGLPLLQI 77
Query: 85 LNQH---------VPQGGVRALILSPTRDLALQTLK----FTKELGRYTDLRISLLVGGD 131
L Q VP AL+L PTR+LALQ + +L L I LL GG
Sbjct: 78 LWQQIAVQTTAKSVPAAKPLALVLVPTRELALQVSEALHALASQLSTSAPLNIQLLCGGV 137
Query: 132 SMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHK 191
++E Q +L+ P +++ATPGRL+ L +SL +++++V DEAD L MGF + K
Sbjct: 138 ALEQQLADLSAKPQLVVATPGRLLD-LCTQSHISLDAIKHLVLDEADRLLEMGFWPDMQK 196
Query: 192 ILGQLSENRQTLLFSATLPSALAEFA-KAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE 250
++ + + +QTLLFSATLP AL A K DP V + +++ + + +
Sbjct: 197 LMAMMPKRKQTLLFSATLPEALDSLAGKLLTNDPLKVEASTRNAVVGEIEEQLYLVNKGS 256
Query: 251 KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVS 310
K AL+ +++++ Q L+F+S + + + + G+ + +G+ DQ R ++
Sbjct: 257 KAQALIALLKQY--QWPQVLVFISARDDADAIAKRLVKAGINAAALHGEKDQTVRSQTLA 314
Query: 311 RFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFV 370
F+A + L+ TD+ ARGI + L VIN D P ++VHR+ S V
Sbjct: 315 DFKADRIQVLVATDLMARGIHVDALPVVINLDLPTSAPVYVHRIGRTARAGAKGLAISLV 374
Query: 371 TSEDMAYLLDLH---------LFLSK-PIRAAPSEEEVLLDMDGVMSKI 409
+M L + +FL+ P+ PSE+ + DG +K+
Sbjct: 375 CHGEMPNLTAIRNLTARALPLVFLADFPVTDKPSEKII----DGAENKV 419
>TIGR_CMR|CPS_1726 [details] [associations]
symbol:CPS_1726 "RNA helicase DeaD" species:167879
"Colwellia psychrerythraea 34H" [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 RefSeq:YP_268464.1 ProteinModelPortal:Q484Q1
STRING:Q484Q1 GeneID:3523325 KEGG:cps:CPS_1726 PATRIC:21466621
OMA:WIVKGVE ProtClustDB:CLSK741103
BioCyc:CPSY167879:GI48-1803-MONOMER Uniprot:Q484Q1
Length = 611
Score = 489 (177.2 bits), Expect = 2.2e-46, P = 2.2e-46
Identities = 114/352 (32%), Positives = 186/352 (52%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F SL L N+ A+ G+ T IQ T+P +L+G DV+ A+TG+GKTAAF +P L +
Sbjct: 17 FASLGLPENLLSAVLSIGFTSATDIQALTIPPLLAGKDVLGEAQTGTGKTAAFGLPALAK 76
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGR-YTDLRISLLVGGDSMESQFEELAQN 143
++ + + + ++L+PTR+LA+Q + + G+ LR++ L GG S QF++L +
Sbjct: 77 IDTSIKKP--QLMVLAPTRELAMQVAEAIESFGKDMKGLRVATLYGGQSYGPQFQQLERG 134
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
+++ TPGRLM HL + + L + V DEAD + MGF E + IL + + Q
Sbjct: 135 AQVVVGTPGRLMDHLRR-KSLKLDELRVCVLDEADEMLNMGFLEDIQWILDHIPKTAQMC 193
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
LFSAT+P A+ + A L+DP +++ K ++ + + K AL I E +
Sbjct: 194 LFSATMPPAIRKIANRFLKDPEHIKVAAVKKAKANITQYAWKVSGITKMTAL-ERIAEVV 252
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
D +IFV T++ + G GD++Q R+ + + ++ K+ L+ T
Sbjct: 253 EYDAM-IIFVRTRNDTVDIAEKLERAGYPALALNGDLNQAQRERCIDQMKSGKSSILVAT 311
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDM 375
DV ARG+DIP + VIN+D P + +VHR+ +FV +M
Sbjct: 312 DVVARGLDIPRISLVINYDLPGDNEAYVHRIGRTGRAGREGMSIAFVRPREM 363
>TIGR_CMR|SO_1136 [details] [associations]
symbol:SO_1136 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
Uniprot:Q8EHT1
Length = 447
Score = 489 (177.2 bits), Expect = 2.2e-46, P = 2.2e-46
Identities = 129/409 (31%), Positives = 211/409 (51%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L L+ + +A+ + K PT +Q+ +P IL+G D++A+++TGSGKT AF +P+LQ
Sbjct: 19 FAELGLNAALRKALPTR-LKHPTRVQQLAIPAILAGRDLLALSQTGSGKTFAFGLPLLQI 77
Query: 85 LNQH---------VPQGGVRALILSPTRDLALQTLK----FTKELGRYTDLRISLLVGGD 131
L Q VP AL+L PTR+LALQ + +L L I LL GG
Sbjct: 78 LWQQIAVQTTAKSVPAAKPLALVLVPTRELALQVSEALHALASQLSTSAPLNIQLLCGGV 137
Query: 132 SMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHK 191
++E Q +L+ P +++ATPGRL+ L +SL +++++V DEAD L MGF + K
Sbjct: 138 ALEQQLADLSAKPQLVVATPGRLLD-LCTQSHISLDAIKHLVLDEADRLLEMGFWPDMQK 196
Query: 192 ILGQLSENRQTLLFSATLPSALAEFA-KAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE 250
++ + + +QTLLFSATLP AL A K DP V + +++ + + +
Sbjct: 197 LMAMMPKRKQTLLFSATLPEALDSLAGKLLTNDPLKVEASTRNAVVGEIEEQLYLVNKGS 256
Query: 251 KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVS 310
K AL+ +++++ Q L+F+S + + + + G+ + +G+ DQ R ++
Sbjct: 257 KAQALIALLKQY--QWPQVLVFISARDDADAIAKRLVKAGINAAALHGEKDQTVRSQTLA 314
Query: 311 RFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFV 370
F+A + L+ TD+ ARGI + L VIN D P ++VHR+ S V
Sbjct: 315 DFKADRIQVLVATDLMARGIHVDALPVVINLDLPTSAPVYVHRIGRTARAGAKGLAISLV 374
Query: 371 TSEDMAYLLDLH---------LFLSK-PIRAAPSEEEVLLDMDGVMSKI 409
+M L + +FL+ P+ PSE+ + DG +K+
Sbjct: 375 CHGEMPNLTAIRNLTARALPLVFLADFPVTDKPSEKII----DGAENKV 419
>MGI|MGI:1924841 [details] [associations]
symbol:Ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 10"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1924841 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
GeneTree:ENSGT00550000074980 CTD:1662 HOVERGEN:HBG102756
OrthoDB:EOG4BK536 OMA:ADKVIEP ChiTaRS:DDX10 EMBL:BC049261
IPI:IPI00896604 RefSeq:NP_084212.2 UniGene:Mm.133560
ProteinModelPortal:Q80Y44 SMR:Q80Y44 STRING:Q80Y44
PhosphoSite:Q80Y44 PaxDb:Q80Y44 PRIDE:Q80Y44
Ensembl:ENSMUST00000065630 GeneID:77591 KEGG:mmu:77591
UCSC:uc009plz.2 InParanoid:Q80Y44 NextBio:347162 Bgee:Q80Y44
CleanEx:MM_DDX10 Genevestigator:Q80Y44
GermOnline:ENSMUSG00000053289 Uniprot:Q80Y44
Length = 875
Score = 508 (183.9 bits), Expect = 2.4e-46, P = 2.4e-46
Identities = 151/555 (27%), Positives = 262/555 (47%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F LS + ++ Y++ T IQ++T+ L L G DV+ A+TGSGKT AFLVP+L+
Sbjct: 71 FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEA 130
Query: 85 LN--QHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
L Q G+ LI+SPTR+LA QT + +++G+ D L++GG ++ + E +
Sbjct: 131 LYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-N 189
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
N +I++ TPGRL+ H+ E +++ +V DEAD + MGFA+ ++ I+ L + RQT
Sbjct: 190 NINILVCTPGRLLQHMDETICFHATNLQMLVLDEADRILDMGFADTMNAIIENLPKKRQT 249
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKIS-P-DLKLAFFTLRQEEKHAALLYMIR 260
LLFSAT ++ + A+ L+DP V + K S P L+ + +K + L +R
Sbjct: 250 LLFSATQTKSVKDLARLSLKDPEYVWVHEKAKYSTPATLEQNYIICELHQKISVLFSFLR 309
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLF-R-EEGLEPSVCYGDMDQDARKIHV-SRFRARKT 317
H+ +++++F S+ V++L +F R G+ +G Q R++ V + F ++
Sbjct: 310 SHLK--KKSIVFFSSCKEVQYLYRVFCRLRPGISILALHG-RQQQMRRMEVYNEFVRKRA 366
Query: 318 MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVT-SEDMA 376
L TD+AARG+D P ++ V+ +D P ++HR + SE+
Sbjct: 367 AVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEEQG 426
Query: 377 YLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSD--- 433
+ L L P++ E L+D V K++ +A + + R + + +
Sbjct: 427 MVQQL-LQKKVPVKEIKINPEKLID---VQKKLESFLAQDQDLKERAQRCFVSYIRSVYL 482
Query: 434 -RVREIID-SSADLN----SLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFK 487
+ +E+ + S + SL R K + PS E ++ P
Sbjct: 483 MKDKEVFNVSKLPITEYALSLGLAVAPRIRFLQKLEKQPSTELVKNPVTEAVPPRAPSLP 542
Query: 488 NVLEGGELMALAFSERLKAFRPKQTILE------AEGEAARSKHLQGPSSQWVDVMKKKR 541
N E E A SE++ LE A G+ + + + D + K R
Sbjct: 543 ND-EADESPAYV-SEKMSVLHKSGERLEETEHRLASGDGDEEQDEETEDEETEDHLGKAR 600
Query: 542 AVH-EKIINLVHQQR 555
H E ++++ Q+
Sbjct: 601 EPHTESVVSIEEAQK 615
>TAIR|locus:2222617 [details] [associations]
symbol:AT5G14610 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009664
"plant-type cell wall organization" evidence=RCA] [GO:0042545 "cell
wall modification" evidence=RCA] InterPro:IPR000629
InterPro:IPR001202 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00397 PROSITE:PS00039
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194 SMART:SM00456
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GO:GO:0003676
Gene3D:2.20.70.10 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
KO:K12823 IPI:IPI00992350 RefSeq:NP_196965.2 UniGene:At.43560
ProteinModelPortal:F4K6V1 SMR:F4K6V1 PRIDE:F4K6V1
EnsemblPlants:AT5G14610.1 GeneID:831313 KEGG:ath:AT5G14610
OMA:YLIPGFM Uniprot:F4K6V1
Length = 712
Score = 501 (181.4 bits), Expect = 2.8e-46, P = 2.8e-46
Identities = 129/392 (32%), Positives = 208/392 (53%)
Query: 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP--M 81
GF S + P R + G+ P+PIQ ++ P+ + D+VA+A+TGSGKT +L+P M
Sbjct: 230 GFNSYLVLPANGRMVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFM 289
Query: 82 -LQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
LQR++ G L+LSPTR+LA Q + G+ + + + L GG Q +E+
Sbjct: 290 HLQRIHNDSRMGPT-ILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEI 348
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
+ DI++ATPGRL + + E++ +SL V Y+V DEAD + MGF Q+ KI+ ++ R
Sbjct: 349 ERGVDIVVATPGRL-NDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKR 407
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRL-DVDTKIS-PDLKLAFFTLRQEEKHAALLYM 258
QTL+++AT P + + A L +P V + +VD ++ + L EKH+ L +
Sbjct: 408 QTLMYTATWPKEVRKIAADLLVNPAQVNIGNVDELVANKSITQTIEVLAPMEKHSRLEQI 467
Query: 259 IREHISSDQQTLIFVSTKHHVEFL-NVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKT 317
+R + +IF STK + L L R G + +GD Q R +++FR+ +T
Sbjct: 468 LRSQ-EPGSKIIIFCSTKRMCDQLARNLTRTFGA--AAIHGDKSQAERDDVLNQFRSGRT 524
Query: 318 MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAY 377
L+ TDVAARG+D+ + V+N+DFP + +VHR+ ++F +D +
Sbjct: 525 PVLVATDVAARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKH 584
Query: 378 LLDLHLFLSKPIRAAPSE-EEVLLDMDGVMSK 408
DL L + P + E+ G M+K
Sbjct: 585 ASDLIKILEGANQKVPPQVREMATRGGGGMNK 616
>CGD|CAL0001638 [details] [associations]
symbol:FAL1 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0097078 "FAl1-SGD1 complex"
evidence=IEA] [GO:0000462 "maturation of SSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0001638 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AACQ01000041 EMBL:AACQ01000040 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AJ250879
RefSeq:XP_718509.1 RefSeq:XP_718592.1 ProteinModelPortal:Q5A9Z6
SMR:Q5A9Z6 GeneID:3639739 GeneID:3639839 KEGG:cal:CaO19.10024
KEGG:cal:CaO19.2488 KO:K13025 Uniprot:Q5A9Z6
Length = 399
Score = 488 (176.8 bits), Expect = 2.8e-46, P = 2.8e-46
Identities = 112/369 (30%), Positives = 195/369 (52%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FES+NL P++ + I G++ P+ IQ + + I+SG D +A A++G+GKTA F + ML+
Sbjct: 28 FESMNLKPDLLKGIYAYGFETPSAIQSRAIMQIISGRDTIAQAQSGTGKTATFSIGMLEV 87
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
++ + +ALILSPTR+LA+Q K LG Y ++ +GG ++ ++L Q
Sbjct: 88 IDTKSKE--CQALILSPTRELAIQIQNVVKHLGDYMNIHTHACIGGKNVGEDVKKLQQGQ 145
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
I+ TPGR++ + ++ ++++ ++ DEAD LF GF EQ+++I L + Q ++
Sbjct: 146 QIVSGTPGRVIDVIKR-RNLQTRNIKVLILDEADELFTKGFKEQIYEIYKHLPPSVQVVV 204
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
SATLP + E DP + + D +K + +E+ L + ++++
Sbjct: 205 VSATLPREVLEMTSKFTTDPVKILVKRDEISLSGIKQYYVQCEREDWKFDTLCDLYDNLT 264
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
Q +IF +TK V +L +++ +GDM QD R ++ FR + LI TD
Sbjct: 265 ITQ-AVIFCNTKLKVNWLADQMKKQNFTVVAMHGDMKQDERDSIMNDFRRGNSRVLISTD 323
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHLF 384
V ARGID+ + VIN+D P + ++HR+ + +T +D+ L + +
Sbjct: 324 VWARGIDVQQVSLVINYDLPTDKENYIHRIGRSGRFGRKGTAINLITKDDVVTLKEFEKY 383
Query: 385 LSKPIRAAP 393
S I+ P
Sbjct: 384 YSTKIKEMP 392
>GENEDB_PFALCIPARUM|PFF1500c [details] [associations]
symbol:PFF1500c "DEAD/DEAH box ATP-dependent RNA
helicase, putative" species:5833 "Plasmodium falciparum"
[GO:0016070 "RNA metabolic process" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
EMBL:AL844505 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
RefSeq:XP_966291.1 ProteinModelPortal:C6KTE4
EnsemblProtists:PFF1500c:mRNA GeneID:3885813 KEGG:pfa:PFF1500c
EuPathDB:PlasmoDB:PF3D7_0630900 ProtClustDB:CLSZ2514457
Uniprot:C6KTE4
Length = 601
Score = 488 (176.8 bits), Expect = 2.8e-46, P = 2.8e-46
Identities = 124/391 (31%), Positives = 211/391 (53%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE LN+ + + +K + T IQ K +P LSG D++ A+TGSGKT AFLVP +
Sbjct: 150 FEELNICDALKKGLKELNFVTLTEIQAKCIPHFLSGKDILGAAKTGSGKTLAFLVPSINI 209
Query: 85 L-N-QHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
L N + +P+ G LI+SPTR+L LQ + K+L +Y +++GG S + ++
Sbjct: 210 LYNIKFLPKNGTGVLIISPTRELCLQIYQVCKDLCKYIPQTNGIIIGGMSRNEEKKKFIH 269
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
+I+IATPGRL+ H+ ++ K++ ++ DEAD L +GF E+++ I+ +L + RQT
Sbjct: 270 GINILIATPGRLLDHMQNTKEFIYKNLICLIIDEADRLLQIGFEEEINLIIKRLPKKRQT 329
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAF-FTLRQEEKHAALLY-MIR 260
LFSAT + + + L+ P + ++V TKI+ +L + L E+K LL+ ++
Sbjct: 330 ALFSATQTTKVESLIRLSLQKP--IFIEVTTKIATVERLQQGYALVDEDKRFLLLFTFLK 387
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVC-YGDMDQDARKIHVSRFRARKTMF 319
+++S ++ ++F + V+F N L + P+ C +G Q+ R F A K
Sbjct: 388 KNMS--KKIMVFFNNCMSVQFYNDLLNYIDI-PTYCIHGKKKQNKRLKSFHDFSAAKCAI 444
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXX-XXXXXXXXXFSFVTSEDMAYL 378
L+ T+VAARG+DIP ++ +I +D P K ++HRV F+ ++ +L
Sbjct: 445 LLCTNVAARGLDIPNVNYIIQYDPPDDSKEYIHRVGRTCRGQDSNGSAIIFLMKHELKFL 504
Query: 379 LDLHLFLSKPIRAAPSEEEVLLDMDGVMSKI 409
L F + PI + L+++ + I
Sbjct: 505 NYLK-FYNIPINQFAYDPNKLINIQSHIQSI 534
>UNIPROTKB|A5A6J2 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9598 "Pan troglodytes" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 HOVERGEN:HBG015893 GO:GO:2001014
CTD:1655 OrthoDB:EOG4BVRTM EMBL:AB222120 RefSeq:NP_001138306.1
UniGene:Ptr.274 ProteinModelPortal:A5A6J2 PRIDE:A5A6J2
GeneID:455267 KEGG:ptr:455267 InParanoid:A5A6J2 NextBio:20836697
Uniprot:A5A6J2
Length = 614
Score = 488 (176.8 bits), Expect = 2.8e-46, P = 2.8e-46
Identities = 118/363 (32%), Positives = 192/363 (52%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F N NV I R+ + PT IQ + P+ LSG D+V +A+TGSGKT ++L+P +
Sbjct: 96 FYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVH 155
Query: 85 LNQHVP---QG-GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
+N H P +G G L+L+PTR+LA Q + E R L+ + + GG Q +L
Sbjct: 156 IN-HQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDL 214
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
+ + IATPGRL+ L E +L+ Y+V DEAD + MGF Q+ KI+ Q+ +R
Sbjct: 215 ERGVENCIATPGRLIDFL-ECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 273
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLD-VDTKISPDLKLAFFTLRQEEKHAALLYMI 259
QTL++SAT P + + A+ L+D + + ++ + ++ EK L+ ++
Sbjct: 274 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 333
Query: 260 REHISS-DQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
E +S + +T++FV TK + L R +G +GD Q R ++ F+ K
Sbjct: 334 EEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAP 393
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYL 378
LI TDVA+RG+D+ + VIN+D+P + ++HR+ ++F T ++ +
Sbjct: 394 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQV 453
Query: 379 LDL 381
DL
Sbjct: 454 SDL 456
>UNIPROTKB|C6KTE4 [details] [associations]
symbol:PFF1500c "DEAD/DEAH box ATP-dependent RNA helicase,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 EMBL:AL844505 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY RefSeq:XP_966291.1
ProteinModelPortal:C6KTE4 EnsemblProtists:PFF1500c:mRNA
GeneID:3885813 KEGG:pfa:PFF1500c EuPathDB:PlasmoDB:PF3D7_0630900
ProtClustDB:CLSZ2514457 Uniprot:C6KTE4
Length = 601
Score = 488 (176.8 bits), Expect = 2.8e-46, P = 2.8e-46
Identities = 124/391 (31%), Positives = 211/391 (53%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE LN+ + + +K + T IQ K +P LSG D++ A+TGSGKT AFLVP +
Sbjct: 150 FEELNICDALKKGLKELNFVTLTEIQAKCIPHFLSGKDILGAAKTGSGKTLAFLVPSINI 209
Query: 85 L-N-QHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
L N + +P+ G LI+SPTR+L LQ + K+L +Y +++GG S + ++
Sbjct: 210 LYNIKFLPKNGTGVLIISPTRELCLQIYQVCKDLCKYIPQTNGIIIGGMSRNEEKKKFIH 269
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
+I+IATPGRL+ H+ ++ K++ ++ DEAD L +GF E+++ I+ +L + RQT
Sbjct: 270 GINILIATPGRLLDHMQNTKEFIYKNLICLIIDEADRLLQIGFEEEINLIIKRLPKKRQT 329
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAF-FTLRQEEKHAALLY-MIR 260
LFSAT + + + L+ P + ++V TKI+ +L + L E+K LL+ ++
Sbjct: 330 ALFSATQTTKVESLIRLSLQKP--IFIEVTTKIATVERLQQGYALVDEDKRFLLLFTFLK 387
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVC-YGDMDQDARKIHVSRFRARKTMF 319
+++S ++ ++F + V+F N L + P+ C +G Q+ R F A K
Sbjct: 388 KNMS--KKIMVFFNNCMSVQFYNDLLNYIDI-PTYCIHGKKKQNKRLKSFHDFSAAKCAI 444
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXX-XXXXXXXXXFSFVTSEDMAYL 378
L+ T+VAARG+DIP ++ +I +D P K ++HRV F+ ++ +L
Sbjct: 445 LLCTNVAARGLDIPNVNYIIQYDPPDDSKEYIHRVGRTCRGQDSNGSAIIFLMKHELKFL 504
Query: 379 LDLHLFLSKPIRAAPSEEEVLLDMDGVMSKI 409
L F + PI + L+++ + I
Sbjct: 505 NYLK-FYNIPINQFAYDPNKLINIQSHIQSI 534
>TIGR_CMR|SPO_1443 [details] [associations]
symbol:SPO_1443 "ATP-dependent RNA helicase RhlE"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_166684.1
ProteinModelPortal:Q5LTH1 GeneID:3193638 KEGG:sil:SPO1443
PATRIC:23376201 OMA:VPTHAED ProtClustDB:CLSK933557 Uniprot:Q5LTH1
Length = 471
Score = 488 (176.8 bits), Expect = 2.8e-46, P = 2.8e-46
Identities = 116/338 (34%), Positives = 182/338 (53%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F LNL+P V +AI+ GY+ PTPIQ +P L G DV+ +A+TG+GKTA+F +PM+
Sbjct: 4 FSELNLNPKVLKAIEEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMITL 63
Query: 85 LNQHVPQGGV-RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L + + + R+L+L PTR+LA Q + ++ L +LL+GG S + Q + +
Sbjct: 64 LARGRARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDALIDRG 123
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
D++IATPGRL+ H E + L V+ +V DEAD + MGF + +I RQTL
Sbjct: 124 VDVLIATPGRLLDHF-ERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTL 182
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLK---LAFFTLRQE----EKHAALL 256
FSAT+ + L P + + S ++ + F R++ EK A L
Sbjct: 183 FFSATMAPEIERITNTFLSAPARIEVARQATASETIEQGVVLFKGSRRDREASEKRAVLR 242
Query: 257 YMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK 316
+I +IF + K V+ + ++ G + + +GD+DQ R + FR K
Sbjct: 243 ALIDAEGEKCTNAIIFCNRKTDVDIVAKSLQKYGYDAAPIHGDLDQSQRTRTLDGFREGK 302
Query: 317 TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRV 354
L+ +DVAARG+D+P + +V N+D P P+ +VHR+
Sbjct: 303 LRLLVASDVAARGLDVPSVSHVFNFDVPGHPEDYVHRI 340
>TAIR|locus:2825324 [details] [associations]
symbol:AT1G71370 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524
GO:GO:0003723 EMBL:AC016163 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268803 KO:K14809 EMBL:AK118294 IPI:IPI00527105
RefSeq:NP_177293.1 UniGene:At.70349 ProteinModelPortal:Q8GXD6
SMR:Q8GXD6 PRIDE:Q8GXD6 EnsemblPlants:AT1G71370.1 GeneID:843478
KEGG:ath:AT1G71370 GeneFarm:1028 TAIR:At1g71370 InParanoid:Q8GXD6
OMA:EYLKCEA PhylomeDB:Q8GXD6 ProtClustDB:CLSN2914591
Genevestigator:Q8GXD6 GermOnline:AT1G71370 Uniprot:Q8GXD6
Length = 558
Score = 488 (176.8 bits), Expect = 2.8e-46, P = 2.8e-46
Identities = 118/361 (32%), Positives = 201/361 (55%)
Query: 30 LSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQ---RLN 86
LS ++ A+ R G++V TP+Q +T+P + S DVV A TGSGKT AFL+P ++ R N
Sbjct: 23 LSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSN 82
Query: 87 QHVPQGG-VRALILSPTRDLALQTLKFTKE-LGRYTDLRISLLVGGDSMESQFEELAQN- 143
+ P+ V +I+SPTR+L+ Q K + + ++ LLVGG +E+ L +
Sbjct: 83 SYPPKPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTLEEEG 142
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
+++I TPGRL + +E + +++E ++ DEAD L MGF +Q++ I+ +L + R+T
Sbjct: 143 ANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTG 202
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTK--ISPDLKLAFFTLRQEEKHAALLYMIRE 261
LFSAT A+A+ AKAGLR+ V ++K S L + ++K + L++++ E
Sbjct: 203 LFSATQTQAVADLAKAGLRNAMEVISGAESKSKTSSGLYCEYLKCEADQKSSQLVHLLIE 262
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCY----GDMDQDARKIHVSRFRARKT 317
+ +++ ++F T V++ ++ + S+ + G MDQ R ++ F +
Sbjct: 263 N--KNKKLVVFFMTCACVDYWGLVLSKIPTLKSISFFSTHGKMDQKGRDTALASFTEASS 320
Query: 318 MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAY 377
L+ TDVAARG+DIP +D V+ +D P P +F+HRV F+ ++ Y
Sbjct: 321 GVLLCTDVAARGLDIPGIDYVVQYDPPQDPDVFIHRVGRTARMERQGRAIVFLMPKETDY 380
Query: 378 L 378
+
Sbjct: 381 V 381
>TAIR|locus:2030285 [details] [associations]
symbol:AT1G72730 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009505
"plant-type cell wall" evidence=IDA] [GO:0005774 "vacuolar
membrane" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0005794 "Golgi apparatus" evidence=RCA] [GO:0009744 "response
to sucrose stimulus" evidence=RCA] [GO:0009749 "response to glucose
stimulus" evidence=RCA] [GO:0009750 "response to fructose stimulus"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005774
GO:GO:0009505 GO:GO:0003743 EMBL:AC010926 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 KO:K03257
ProtClustDB:CLSN2679594 EMBL:AJ010472 EMBL:AY060592 EMBL:AY142066
EMBL:AY088176 IPI:IPI00526542 PIR:B96752 PIR:T51347
RefSeq:NP_177417.1 UniGene:At.22983 ProteinModelPortal:Q9CAI7
SMR:Q9CAI7 IntAct:Q9CAI7 STRING:Q9CAI7 PaxDb:Q9CAI7 PRIDE:Q9CAI7
EnsemblPlants:AT1G72730.1 GeneID:843605 KEGG:ath:AT1G72730
GeneFarm:940 TAIR:At1g72730 InParanoid:Q9CAI7 OMA:AVINYHI
PhylomeDB:Q9CAI7 Genevestigator:Q9CAI7 GermOnline:AT1G72730
Uniprot:Q9CAI7
Length = 414
Score = 488 (176.8 bits), Expect = 2.8e-46, P = 2.8e-46
Identities = 116/376 (30%), Positives = 195/376 (51%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+++ L P++ R I G++ P+ IQ++ + G DV+ A++G+GKTA F +LQ+
Sbjct: 43 FDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQQ 102
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L+ + Q +AL+L+PTR+LA Q K + LG Y ++ VGG S+ L
Sbjct: 103 LDISLVQ--CQALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQSGV 160
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
+++ TPGR+ L + + +++ V DEAD + GF +Q++ I L Q +
Sbjct: 161 HVVVGTPGRVFDLLRR-QSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGV 219
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P E + + P + + D +K + + +EE L + E ++
Sbjct: 220 FSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLA 279
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
Q ++IFV+T+ V++L R S +GDMDQ+ R I + FR+ + LI TD
Sbjct: 280 ITQ-SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD 338
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHLF 384
+ ARGID+ + VIN+D P +P+ ++HR+ +F+TSED + D+ F
Sbjct: 339 LLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFMTSEDERMMADIQRF 398
Query: 385 LSKPIRAAPSEEEVLL 400
+ + PS LL
Sbjct: 399 YNVVVEELPSNVADLL 414
>GENEDB_PFALCIPARUM|PF14_0437 [details] [associations]
symbol:PF14_0437 "helicase, truncated,
putative" species:5833 "Plasmodium falciparum" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_001348611.2 ProteinModelPortal:Q8IL13 IntAct:Q8IL13
MINT:MINT-1661155 PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA
GeneID:812019 KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 487 (176.5 bits), Expect = 3.7e-46, P = 3.7e-46
Identities = 121/370 (32%), Positives = 197/370 (53%)
Query: 34 VFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRL--NQHVPQ 91
V +++K PTPIQ + P+ LSG D++ A TGSGKT AF++P + ++
Sbjct: 124 VIKSLKNNNIVAPTPIQIQGWPIALSGKDMIGKAETGSGKTLAFILPAFVHILAQPNLKY 183
Query: 92 G-GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIAT 150
G G L+L+PTR+LA Q + + + +R + GG Q L Q I+IA
Sbjct: 184 GDGPIVLVLAPTRELAEQIRQECIKFSTESKIRNTCAYGGVPKSGQIYALKQGVHILIAC 243
Query: 151 PGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLP 210
PGRL+ L E +L V Y+V DEAD + MGF Q+ KI+ Q+ +RQTL++SAT P
Sbjct: 244 PGRLID-LLEQNVTNLMRVTYLVLDEADKMLDMGFELQIRKIVDQIRPDRQTLMWSATWP 302
Query: 211 SALAEFAKAGLRD-PHLVRLDVDTKIS-PDLKLAFFTLRQEEKHAALLYMIREHISSDQQ 268
+ AK ++ P V + T + +K + L + EK L +++ + +
Sbjct: 303 KEVQALAKDLCKEQPIQVNVGSLTLTACRSIKQEIYLLEEHEKIGNLKSLLQRIFKDNDR 362
Query: 269 TLIFVSTKHHVEFLNVLFREEGLEPSVC-YGDMDQDARKIHVSRFRARKTMFLIVTDVAA 327
++FV TK + +F+ R +G+ P++C +GD Q+ R+ ++ F+ K+ +I TDVA+
Sbjct: 363 IIVFVETKKNADFITKALRLDGM-PALCIHGDKKQEERRWVLNEFKTGKSPIMIATDVAS 421
Query: 328 RGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHLFLSK 387
RG+DI + VIN+DFP + + +VHR+ F+F+T++ DL L +
Sbjct: 422 RGLDIKNVKYVINFDFPNQIEDYVHRIGRTGRAGSHGASFTFLTADKYRLAKDLVKILRE 481
Query: 388 PIRAAPSEEE 397
+ P + E
Sbjct: 482 SEQPVPPQLE 491
>UNIPROTKB|Q86TM3 [details] [associations]
symbol:DDX53 "Probable ATP-dependent RNA helicase DDX53"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
HOVERGEN:HBG015893 OrthoDB:EOG43BMNQ EMBL:AY039237 EMBL:BC051703
EMBL:BC067878 IPI:IPI00328813 PIR:JC7831 RefSeq:NP_874358.2
UniGene:Hs.434416 PDB:3IUY PDBsum:3IUY ProteinModelPortal:Q86TM3
SMR:Q86TM3 STRING:Q86TM3 PhosphoSite:Q86TM3 DMDM:143811384
PaxDb:Q86TM3 PRIDE:Q86TM3 Ensembl:ENST00000327968 GeneID:168400
KEGG:hsa:168400 UCSC:uc004daj.3 CTD:168400 GeneCards:GC0XP023018
HGNC:HGNC:20083 HPA:HPA003186 neXtProt:NX_Q86TM3
PharmGKB:PA134863598 InParanoid:Q86TM3 OMA:GLKSICI
EvolutionaryTrace:Q86TM3 GenomeRNAi:168400 NextBio:88718
Bgee:Q86TM3 CleanEx:HS_DDX53 Genevestigator:Q86TM3
GermOnline:ENSG00000184735 Uniprot:Q86TM3
Length = 631
Score = 487 (176.5 bits), Expect = 3.7e-46, P = 3.7e-46
Identities = 116/375 (30%), Positives = 204/375 (54%)
Query: 32 PNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLN-QHVP 90
P++ ++I R G PTPIQ + P+IL G D++ +A+TG+GKT ++L+P L+ Q +
Sbjct: 231 PDLLKSIIRVGIVKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPIS 290
Query: 91 Q---GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDII 147
+ G L+L+PTR+LAL + Y L+ + GG + Q E++++ DII
Sbjct: 291 REQRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDII 349
Query: 148 IATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSA 207
IATPGRL + L ++L+S+ Y+V DEAD + M F Q+ KIL + +RQT++ SA
Sbjct: 350 IATPGRL-NDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSA 408
Query: 208 TLPSALAEFAKAGLRDPHLVRL-DVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSD 266
T P + + A + L+DP +V + +++ +K ++EK A + E++S +
Sbjct: 409 TWPDTVRQLALSYLKDPMIVYVGNLNLVAVNTVKQNIIVTTEKEKRALTQEFV-ENMSPN 467
Query: 267 QQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVA 326
+ ++FVS KH + L+ F +G+ +G+ +Q ++ V F++ LI TD+
Sbjct: 468 DKVIMFVSQKHIADDLSSDFNIQGISAESLHGNSEQSDQERAVEDFKSGNIKILITTDIV 527
Query: 327 ARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHLFLS 386
+RG+D+ + +V N+DFP ++VHRV + +T D +L L
Sbjct: 528 SRGLDLNDVTHVYNYDFPRNIDVYVHRVGYIGRTGKTGTSVTLITQRDSKMAGELIKILD 587
Query: 387 KPIRAAPSEEEVLLD 401
+ ++ P + V+ +
Sbjct: 588 RANQSVPEDLVVMAE 602
>UNIPROTKB|Q8IL13 [details] [associations]
symbol:PF14_0437 "Helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014187
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_001348611.2
ProteinModelPortal:Q8IL13 IntAct:Q8IL13 MINT:MINT-1661155
PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA GeneID:812019
KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 487 (176.5 bits), Expect = 3.7e-46, P = 3.7e-46
Identities = 121/370 (32%), Positives = 197/370 (53%)
Query: 34 VFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRL--NQHVPQ 91
V +++K PTPIQ + P+ LSG D++ A TGSGKT AF++P + ++
Sbjct: 124 VIKSLKNNNIVAPTPIQIQGWPIALSGKDMIGKAETGSGKTLAFILPAFVHILAQPNLKY 183
Query: 92 G-GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIAT 150
G G L+L+PTR+LA Q + + + +R + GG Q L Q I+IA
Sbjct: 184 GDGPIVLVLAPTRELAEQIRQECIKFSTESKIRNTCAYGGVPKSGQIYALKQGVHILIAC 243
Query: 151 PGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLP 210
PGRL+ L E +L V Y+V DEAD + MGF Q+ KI+ Q+ +RQTL++SAT P
Sbjct: 244 PGRLID-LLEQNVTNLMRVTYLVLDEADKMLDMGFELQIRKIVDQIRPDRQTLMWSATWP 302
Query: 211 SALAEFAKAGLRD-PHLVRLDVDTKIS-PDLKLAFFTLRQEEKHAALLYMIREHISSDQQ 268
+ AK ++ P V + T + +K + L + EK L +++ + +
Sbjct: 303 KEVQALAKDLCKEQPIQVNVGSLTLTACRSIKQEIYLLEEHEKIGNLKSLLQRIFKDNDR 362
Query: 269 TLIFVSTKHHVEFLNVLFREEGLEPSVC-YGDMDQDARKIHVSRFRARKTMFLIVTDVAA 327
++FV TK + +F+ R +G+ P++C +GD Q+ R+ ++ F+ K+ +I TDVA+
Sbjct: 363 IIVFVETKKNADFITKALRLDGM-PALCIHGDKKQEERRWVLNEFKTGKSPIMIATDVAS 421
Query: 328 RGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHLFLSK 387
RG+DI + VIN+DFP + + +VHR+ F+F+T++ DL L +
Sbjct: 422 RGLDIKNVKYVINFDFPNQIEDYVHRIGRTGRAGSHGASFTFLTADKYRLAKDLVKILRE 481
Query: 388 PIRAAPSEEE 397
+ P + E
Sbjct: 482 SEQPVPPQLE 491
>SGD|S000004903 [details] [associations]
symbol:HAS1 "ATP-dependent RNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0008186 "RNA-dependent ATPase
activity" evidence=IDA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA;IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA]
[GO:0005635 "nuclear envelope" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=IEA;IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0030686 "90S preribosome"
evidence=IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000004903 GO:GO:0005524
GO:GO:0005635 GO:GO:0005730 GO:GO:0003723 EMBL:BK006946
GO:GO:0030687 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030686 GO:GO:0006364 GO:GO:0004004 EMBL:X80836
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY GeneTree:ENSGT00680000100037 OrthoDB:EOG4ZKNVS
PIR:S47451 RefSeq:NP_014017.1 ProteinModelPortal:Q03532 SMR:Q03532
DIP:DIP-4396N IntAct:Q03532 MINT:MINT-482816 STRING:Q03532
PaxDb:Q03532 PeptideAtlas:Q03532 EnsemblFungi:YMR290C GeneID:855335
KEGG:sce:YMR290C CYGD:YMR290c NextBio:979064 Genevestigator:Q03532
GermOnline:YMR290C Uniprot:Q03532
Length = 505
Score = 487 (176.5 bits), Expect = 3.7e-46, P = 3.7e-46
Identities = 114/393 (29%), Positives = 211/393 (53%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE L LS +AI++ G+ T +Q +T+P +L+G DV+ A+TGSGKT AFL+P ++
Sbjct: 44 FEELKLSQPTLKAIEKMGFTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEL 103
Query: 85 LN--QHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
L+ + P+ G ++++PTR+LALQ +EL + +++GG + + E+L +
Sbjct: 104 LHSLKFKPRNGTGIIVITPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEAEKLMK 163
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL-SENRQ 201
+++IATPGRL+ HL + K+++ ++ DEAD + +GF +++ +I+ L +E+RQ
Sbjct: 164 GVNMLIATPGRLLDHLQNTKGFVFKNLKALIIDEADRILEIGFEDEMRQIIKILPNEDRQ 223
Query: 202 TLLFSATLPSALAEFAKAGLRD-PHLVRL--DVDTKISPDLKLAFFTLRQEEKHAALLYM 258
++LFSAT + + + A+ LR P + + + D + L+ + +++ L
Sbjct: 224 SMLFSATQTTKVEDLARISLRPGPLFINVVPETDNSTADGLEQGYVVCDSDKRFLLLFSF 283
Query: 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
++ + ++ ++F+S+ + V++ L L +G Q R F +
Sbjct: 284 LKRN--QKKKIIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERG 341
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXX-XFSFVTSEDMAY 377
LI TDVAARG+DIP +D +I +D P P+ ++HRV F+T ++ +
Sbjct: 342 ILICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTKGKGKSLMFLTPNELGF 401
Query: 378 LLDLHLFLSK-PIRAAPSEEEVLLDMDGVMSKI 409
L +L SK P+ E + ++ + K+
Sbjct: 402 LR--YLKASKVPLNEYEFPENKIANVQSQLEKL 432
>UNIPROTKB|E1BJD2 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:DAAA02049325 IPI:IPI00701280
Ensembl:ENSBTAT00000028046 Uniprot:E1BJD2
Length = 946
Score = 507 (183.5 bits), Expect = 4.3e-46, P = 4.3e-46
Identities = 126/361 (34%), Positives = 191/361 (52%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F + I++ Y PTPIQ + +P+ LSG D++ +A+TGSGKTAAF+ PML
Sbjct: 255 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 314
Query: 85 L---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
+ + P G A+I+ PTR+L Q K G+ +LR + GG SM Q + L
Sbjct: 315 IMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQ 374
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ +I++ TPGRL+ H+ + + +L+ V Y+VFDEAD +F MGF Q+ I + +RQ
Sbjct: 375 EGAEIVVCTPGRLIDHVKK-KATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQ 433
Query: 202 TLLFSATLPSALAEFAKAGLRDP-HLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
TLLFSAT + + A+ L DP +V+ D+ + + D+ L K L +
Sbjct: 434 TLLFSATFRKKIEKLARDILIDPIRVVQGDIG-EANEDVTQIVEILHSGSKWNWLTRRLV 492
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
E SS L+FV+ K + E L ++EG + +GDMDQ R +S F+ + L
Sbjct: 493 EFTSSGS-VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVL 551
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLD 380
+ TDVAARG+DIP + VIN+D HR+ ++ +T +D + D
Sbjct: 552 VATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGD 611
Query: 381 L 381
L
Sbjct: 612 L 612
>ZFIN|ZDB-GENE-030131-9685 [details] [associations]
symbol:ddx18 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 18" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0030099 "myeloid
cell differentiation" evidence=IMP] [GO:0030097 "hemopoiesis"
evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-9685
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0030099 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 KO:K13179 CTD:8886
HOVERGEN:HBG105702 EMBL:AY648748 IPI:IPI00492099
RefSeq:NP_001003411.1 UniGene:Dr.24235 ProteinModelPortal:Q6DRL1
STRING:Q6DRL1 PRIDE:Q6DRL1 GeneID:321127 KEGG:dre:321127
InParanoid:Q6DRL1 NextBio:20807243 ArrayExpress:Q6DRL1 Bgee:Q6DRL1
Uniprot:Q6DRL1
Length = 653
Score = 486 (176.1 bits), Expect = 4.8e-46, P = 4.8e-46
Identities = 115/341 (33%), Positives = 191/341 (56%)
Query: 25 FESLN--LSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPML 82
F SL+ +S N + +K G+ T IQ KT+ +L G DV+A A+TGSGKT AFL+P +
Sbjct: 161 FASLSEVVSENTLKGVKEMGFDTMTEIQHKTIRPLLEGRDVLAAAKTGSGKTLAFLIPSI 220
Query: 83 QRLNQ--HVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
+ + + +P+ G ++LSPTR+LA+QT KEL + L++GG + ++ ++L
Sbjct: 221 ELIYKLKFMPRNGTGVIVLSPTRELAMQTYGVLKELMTHHVHTYGLIMGGSNRSAEAQKL 280
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
A +I++ATPGRL+ HL K+++ ++ DEAD + +GF E+L +I+ L + R
Sbjct: 281 ANGVNILVATPGRLLDHLQNTPGFMFKNLQCLIIDEADRILEVGFEEELKQIIKLLPKKR 340
Query: 201 QTLLFSATLPSALAEFAKAGLR-DPHLVRLD--VDTKISPDLKLAFFTLRQEEKHAALLY 257
Q++LFSAT + + A+ L+ +P V +D DT L+ + E++ L
Sbjct: 341 QSMLFSATQTRKVEDLARISLKKEPLYVGVDDNKDTATVEGLEQGYVVCPSEKRFLLLFT 400
Query: 258 MIREHISSDQQTLIF----VSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFR 313
++++ ++ ++F +S K H E LN + L +G Q R +F
Sbjct: 401 FLKKN--RKKKLMVFFSSCMSVKFHYELLNYI----DLPVMAIHGKQKQTKRTTTFFQFC 454
Query: 314 ARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRV 354
+ L+ TDVAARG+DIP +D ++ +D P PK ++HRV
Sbjct: 455 NADSGILLCTDVAARGLDIPEVDWIVQFDPPDDPKEYIHRV 495
>TAIR|locus:2098886 [details] [associations]
symbol:AT3G61240 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005829
"cytosol" evidence=RCA] [GO:0009165 "nucleotide biosynthetic
process" evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006417 GO:GO:0006397 GO:GO:0003723
EMBL:AL137898 GO:GO:0000932 GO:GO:0051028 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
EMBL:AJ010464 EMBL:AY120712 EMBL:BT000038 IPI:IPI00548726
PIR:T47916 PIR:T51743 RefSeq:NP_191683.1 RefSeq:NP_974472.1
UniGene:At.20236 ProteinModelPortal:Q9M2E0 SMR:Q9M2E0 STRING:Q9M2E0
PaxDb:Q9M2E0 PRIDE:Q9M2E0 EnsemblPlants:AT3G61240.1
EnsemblPlants:AT3G61240.2 GeneID:825296 KEGG:ath:AT3G61240
GeneFarm:928 TAIR:At3g61240 InParanoid:Q9M2E0 OMA:PLAMDQR
PhylomeDB:Q9M2E0 ProtClustDB:CLSN2683443 Genevestigator:Q9M2E0
GermOnline:AT3G61240 Uniprot:Q9M2E0
Length = 498
Score = 485 (175.8 bits), Expect = 6.2e-46, P = 6.2e-46
Identities = 121/371 (32%), Positives = 194/371 (52%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE L ++ + I KG++ P+PIQ +++P+ L+G+D++A A+ G+GKT AF +P+L++
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
++ + ++A+IL PTR+LALQT + KEL +Y ++++ + GG S+ L Q
Sbjct: 186 IDPN--NNVIQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPV 243
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
+++ TPGR++ L++ LK +V DEAD L F L +++ L +NRQ L+
Sbjct: 244 HLLVGTPGRILD-LTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLM 302
Query: 205 FSATLPSALAEFAKAGLRDPHLVRL-DVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
FSAT P + F LR P+++ L D T + AF RQ+ H + I
Sbjct: 303 FSATFPVTVKAFKDRHLRKPYVINLMDQLTLMGVTQYYAFVEERQKV-HCLNTLFSKLQI 361
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+ Q++IF ++ + VE L E G + M QD R FR L+ T
Sbjct: 362 N---QSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCT 418
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHL 383
D+ RGIDI ++ VIN+DFP + ++HRV + VT ED +
Sbjct: 419 DLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMYQTEQ 478
Query: 384 FLSKPIRAAPS 394
L I+ PS
Sbjct: 479 ELGTEIKPIPS 489
Score = 222 (83.2 bits), Expect = 5.6e-15, P = 5.6e-15
Identities = 71/248 (28%), Positives = 110/248 (44%)
Query: 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPH 225
LK +V DEAD L F L +++ L +NRQ L+FSAT P + F LR P+
Sbjct: 264 LKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFSATFPVTVKAFKDRHLRKPY 323
Query: 226 LVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVL 285
++ L + + F +++ H + I+ Q++IF ++ + VE L
Sbjct: 324 VINLMDQLTLMGVTQYYAFVEERQKVHCLNTLFSKLQIN---QSIIFCNSVNRVELLAKK 380
Query: 286 FREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPP 345
E G + M QD R FR L+ TD+ RGIDI ++ VIN+DFP
Sbjct: 381 ITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPR 440
Query: 346 KPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGV 405
+ ++HRV + VT ED + +E+E+ ++ +
Sbjct: 441 TSESYLHRVGRSGRFGHLGLAVNLVTYEDR-------------FKMYQTEQELGTEIKPI 487
Query: 406 MSKIDQAI 413
S IDQAI
Sbjct: 488 PSNIDQAI 495
>UNIPROTKB|Q5ZM36 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0006417 GO:GO:0000184 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0051028 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025 CTD:9775
OrthoDB:EOG4229JV EMBL:AJ719548 IPI:IPI00588271
RefSeq:NP_001025820.1 UniGene:Gga.7844 ProteinModelPortal:Q5ZM36
SMR:Q5ZM36 PRIDE:Q5ZM36 GeneID:416704 KEGG:gga:416704
InParanoid:Q5ZM36 NextBio:20820126 Uniprot:Q5ZM36
Length = 412
Score = 485 (175.8 bits), Expect = 6.2e-46, P = 6.2e-46
Identities = 111/369 (30%), Positives = 194/369 (52%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+++ L ++ R I G++ P+ IQ++ + I+ G DV+A +++G+GKTA F + +LQ
Sbjct: 41 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQC 100
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L+ V + +ALIL+PTR+LA+Q K LG Y +++ +GG ++ +L
Sbjct: 101 LDIQVRE--TQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ 158
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
++ TPGR+ + + ++++ +V DEAD + GF EQ++ + L Q +L
Sbjct: 159 HVVAGTPGRVFDMIRR-RSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVL 217
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
SATLP + E + DP + + D +K F + +EE L + + ++
Sbjct: 218 ISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLT 277
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
Q +IF +TK V++L RE S +GDM Q R+ + FR+ + LI TD
Sbjct: 278 ITQ-AVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD 336
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHLF 384
V ARG+D+P + +IN+D P ++++HR+ +FV ++D+ L D+ +
Sbjct: 337 VWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQY 396
Query: 385 LSKPIRAAP 393
S I P
Sbjct: 397 YSTQIDEMP 405
>UNIPROTKB|Q2NL22 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045727 "positive regulation of translation"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0000184
GO:GO:0008380 GO:GO:0017148 GO:GO:0016607 GO:GO:0006397
GO:GO:0045727 GO:GO:0051028 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
GO:GO:0035145 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008143 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 KO:K13025 EMBL:BC111184
IPI:IPI00708766 RefSeq:NP_001039653.1 UniGene:Bt.3377
ProteinModelPortal:Q2NL22 SMR:Q2NL22 PRIDE:Q2NL22
Ensembl:ENSBTAT00000021327 GeneID:515145 KEGG:bta:515145 CTD:9775
InParanoid:Q2NL22 OMA:LALGDFM OrthoDB:EOG4229JV NextBio:20871682
Uniprot:Q2NL22
Length = 411
Score = 485 (175.8 bits), Expect = 6.2e-46, P = 6.2e-46
Identities = 111/369 (30%), Positives = 194/369 (52%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+++ L ++ R I G++ P+ IQ++ + I+ G DV+A +++G+GKTA F + +LQ
Sbjct: 40 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQC 99
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L+ V + +ALIL+PTR+LA+Q K LG Y +++ +GG ++ +L
Sbjct: 100 LDIQVRE--TQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ 157
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
++ TPGR+ + + ++++ +V DEAD + GF EQ++ + L Q +L
Sbjct: 158 HVVAGTPGRVFDMIRR-RSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVL 216
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
SATLP + E + DP + + D +K F + +EE L + + ++
Sbjct: 217 ISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLT 276
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
Q +IF +TK V++L RE S +GDM Q R+ + FR+ + LI TD
Sbjct: 277 ITQ-AVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD 335
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHLF 384
V ARG+D+P + +IN+D P ++++HR+ +FV ++D+ L D+ +
Sbjct: 336 VWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQY 395
Query: 385 LSKPIRAAP 393
S I P
Sbjct: 396 YSTQIDEMP 404
>UNIPROTKB|E2RDZ4 [details] [associations]
symbol:EIF4A3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0035145 "exon-exon junction complex" evidence=IEA] [GO:0017148
"negative regulation of translation" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0045727 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0035145 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008143
GeneTree:ENSGT00530000062880 KO:K13025 OMA:EDWKFDT CTD:9775
EMBL:AAEX03006203 RefSeq:XP_533130.2 Ensembl:ENSCAFT00000009055
GeneID:475922 KEGG:cfa:475922 NextBio:20851666 Uniprot:E2RDZ4
Length = 411
Score = 485 (175.8 bits), Expect = 6.2e-46, P = 6.2e-46
Identities = 111/369 (30%), Positives = 194/369 (52%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+++ L ++ R I G++ P+ IQ++ + I+ G DV+A +++G+GKTA F + +LQ
Sbjct: 40 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQC 99
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L+ V + +ALIL+PTR+LA+Q K LG Y +++ +GG ++ +L
Sbjct: 100 LDIQVRE--TQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ 157
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
++ TPGR+ + + ++++ +V DEAD + GF EQ++ + L Q +L
Sbjct: 158 HVVAGTPGRVFDMIRR-RSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVL 216
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
SATLP + E + DP + + D +K F + +EE L + + ++
Sbjct: 217 ISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLT 276
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
Q +IF +TK V++L RE S +GDM Q R+ + FR+ + LI TD
Sbjct: 277 ITQ-AVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD 335
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHLF 384
V ARG+D+P + +IN+D P ++++HR+ +FV ++D+ L D+ +
Sbjct: 336 VWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQY 395
Query: 385 LSKPIRAAP 393
S I P
Sbjct: 396 YSTQIDEMP 404
>UNIPROTKB|P38919 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9606 "Homo sapiens" [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048026 "positive
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0045727 "positive regulation
of translation" evidence=IMP] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0035145 "exon-exon junction complex"
evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IMP;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0017148 "negative
regulation of translation" evidence=IDA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0019221
"cytokine-mediated signaling pathway" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005829
GO:GO:0005524 Reactome:REACT_6900 GO:GO:0000184 GO:GO:0017148
GO:GO:0016607 GO:GO:0019221 TCDB:3.A.18.1.1 EMBL:CH471099
GO:GO:0045727 GO:GO:0051028 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 GO:GO:0000289 EMBL:AC087741 GO:GO:0035145 PDB:2HYI
PDB:2J0Q PDB:2J0S PDB:2J0U PDB:2XB2 PDB:3EX7 PDBsum:2HYI
PDBsum:2J0Q PDBsum:2J0S PDBsum:2J0U PDBsum:2XB2 PDBsum:3EX7
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0008143 HOVERGEN:HBG107989 KO:K13025
OMA:EDWKFDT CTD:9775 OrthoDB:EOG4229JV EMBL:X79538 EMBL:D21853
EMBL:AK290608 EMBL:CR456750 EMBL:BC003662 EMBL:BC004386
EMBL:BC011151 IPI:IPI00009328 PIR:S45142 RefSeq:NP_055555.1
UniGene:Hs.389649 PDB:2HXY PDBsum:2HXY ProteinModelPortal:P38919
SMR:P38919 DIP:DIP-33218N IntAct:P38919 MINT:MINT-1460615
STRING:P38919 PhosphoSite:P38919 DMDM:20532400
REPRODUCTION-2DPAGE:IPI00009328 PaxDb:P38919 PeptideAtlas:P38919
PRIDE:P38919 DNASU:9775 Ensembl:ENST00000269349 GeneID:9775
KEGG:hsa:9775 UCSC:uc002jxs.3 GeneCards:GC17M078109 HGNC:HGNC:18683
HPA:HPA021878 MIM:608546 neXtProt:NX_P38919 PharmGKB:PA162384945
InParanoid:P38919 PhylomeDB:P38919 ChiTaRS:EIF4A3
EvolutionaryTrace:P38919 GenomeRNAi:9775 NextBio:36802 Bgee:P38919
CleanEx:HS_EIF4A3 Genevestigator:P38919 GermOnline:ENSG00000141543
Uniprot:P38919
Length = 411
Score = 485 (175.8 bits), Expect = 6.2e-46, P = 6.2e-46
Identities = 111/369 (30%), Positives = 194/369 (52%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+++ L ++ R I G++ P+ IQ++ + I+ G DV+A +++G+GKTA F + +LQ
Sbjct: 40 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQC 99
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L+ V + +ALIL+PTR+LA+Q K LG Y +++ +GG ++ +L
Sbjct: 100 LDIQVRE--TQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ 157
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
++ TPGR+ + + ++++ +V DEAD + GF EQ++ + L Q +L
Sbjct: 158 HVVAGTPGRVFDMIRR-RSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVL 216
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
SATLP + E + DP + + D +K F + +EE L + + ++
Sbjct: 217 ISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLT 276
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
Q +IF +TK V++L RE S +GDM Q R+ + FR+ + LI TD
Sbjct: 277 ITQ-AVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD 335
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHLF 384
V ARG+D+P + +IN+D P ++++HR+ +FV ++D+ L D+ +
Sbjct: 336 VWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQY 395
Query: 385 LSKPIRAAP 393
S I P
Sbjct: 396 YSTQIDEMP 404
>UNIPROTKB|A6M931 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 KO:K13025 CTD:9775
OrthoDB:EOG4229JV EMBL:DQ351286 RefSeq:NP_001093663.1
UniGene:Ssc.869 ProteinModelPortal:A6M931 SMR:A6M931 PRIDE:A6M931
GeneID:100101926 KEGG:ssc:100101926 Uniprot:A6M931
Length = 411
Score = 485 (175.8 bits), Expect = 6.2e-46, P = 6.2e-46
Identities = 111/369 (30%), Positives = 194/369 (52%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+++ L ++ R I G++ P+ IQ++ + I+ G DV+A +++G+GKTA F + +LQ
Sbjct: 40 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQC 99
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L+ V + +ALIL+PTR+LA+Q K LG Y +++ +GG ++ +L
Sbjct: 100 LDIQVRE--TQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ 157
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
++ TPGR+ + + ++++ +V DEAD + GF EQ++ + L Q +L
Sbjct: 158 HVVAGTPGRVFDMIRR-RSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVL 216
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
SATLP + E + DP + + D +K F + +EE L + + ++
Sbjct: 217 ISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLT 276
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
Q +IF +TK V++L RE S +GDM Q R+ + FR+ + LI TD
Sbjct: 277 ITQ-AVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD 335
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHLF 384
V ARG+D+P + +IN+D P ++++HR+ +FV ++D+ L D+ +
Sbjct: 336 VWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQY 395
Query: 385 LSKPIRAAP 393
S I P
Sbjct: 396 YSTQIDEMP 404
>UNIPROTKB|Q4K4K3 [details] [associations]
symbol:dbpA "ATP-independent RNA helicase DbpA"
species:220664 "Pseudomonas protegens Pf-5" [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 EMBL:CP000076 GenomeReviews:CP000076_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 OMA:THEKSTI RefSeq:YP_262830.1
ProteinModelPortal:Q4K4K3 STRING:Q4K4K3 GeneID:3480144
KEGG:pfl:PFL_5772 PATRIC:19881049
BioCyc:PFLU220664:GIX8-5812-MONOMER Uniprot:Q4K4K3
Length = 461
Score = 485 (175.8 bits), Expect = 6.2e-46, P = 6.2e-46
Identities = 120/334 (35%), Positives = 179/334 (53%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F +L LSP + + GY TPIQ +++P+IL G D++A A+TGSGKTAAF + +L
Sbjct: 8 FNTLPLSPAMLANLDSLGYAQMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGIGLLNP 67
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD-LRISLLVGGDSMESQFEELAQN 143
+N G +AL++ PTR+LA Q K + L R D +++ L GG S Q L
Sbjct: 68 INPRY--FGCQALVICPTRELADQVAKEVRRLARAEDNIKVLTLCGGVSFGPQIASLEHG 125
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
II+ TPGR+ HL + + L + +V DEAD + MGF + + I+ + RQTL
Sbjct: 126 AHIIVGTPGRIQQHLRK-GSLVLDGLNTLVLDEADRMLDMGFYDAIEDIIEKTPSRRQTL 184
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDV---DTKISPDLKLAFFTLRQEEKHAALLYMIR 260
LFSAT P + + A +RDP V+ + DT+I F+ + EE+ +A+ ++
Sbjct: 185 LFSATYPVGIKQLASKFMRDPQTVKAEAFHDDTQIEQ----RFYEISPEERMSAVTKVL- 239
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
H + F TK V+ +G+ +GD++Q R ++ F R T L
Sbjct: 240 -HHFRPASCVAFCFTKQQVQETVDHLTAKGISAVGLHGDLEQRDRDQVLAMFANRSTSVL 298
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRV 354
+ TDVAARG+DI LD VIN + +I +HRV
Sbjct: 299 VATDVAARGLDIDALDMVINVELARDSEIHIHRV 332
>RGD|1591139 [details] [associations]
symbol:Eif4a3 "eukaryotic translation initiation factor 4A,
isoform 3" species:10116 "Rattus norvegicus" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0035145 "exon-exon junction complex" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1591139 GO:GO:0005524
GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
EMBL:CH473948 GO:GO:0051028 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P60842 KO:K13025 CTD:9775 EMBL:BC105875
IPI:IPI00656385 RefSeq:NP_001093628.1 UniGene:Rn.202617
ProteinModelPortal:Q3B8Q2 SMR:Q3B8Q2 PRIDE:Q3B8Q2 GeneID:688288
KEGG:rno:688288 NextBio:736113 Genevestigator:Q3B8Q2 Uniprot:Q3B8Q2
Length = 411
Score = 485 (175.8 bits), Expect = 6.2e-46, P = 6.2e-46
Identities = 111/369 (30%), Positives = 194/369 (52%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+++ L ++ R I G++ P+ IQ++ + I+ G DV+A +++G+GKTA F + +LQ
Sbjct: 40 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQC 99
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L+ V + +ALIL+PTR+LA+Q K LG Y +++ +GG ++ +L
Sbjct: 100 LDIQVRE--TQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ 157
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
++ TPGR+ + + ++++ +V DEAD + GF EQ++ + L Q +L
Sbjct: 158 HVVAGTPGRVFDMIRR-RSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVL 216
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
SATLP + E + DP + + D +K F + +EE L + + ++
Sbjct: 217 ISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLT 276
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
Q +IF +TK V++L RE S +GDM Q R+ + FR+ + LI TD
Sbjct: 277 ITQ-AVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD 335
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLLDLHLF 384
V ARG+D+P + +IN+D P ++++HR+ +FV ++D+ L D+ +
Sbjct: 336 VWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQY 395
Query: 385 LSKPIRAAP 393
S I P
Sbjct: 396 YSTQIDEMP 404
>UNIPROTKB|Q8EDC4 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 484 (175.4 bits), Expect = 8.1e-46, P = 8.1e-46
Identities = 121/368 (32%), Positives = 194/368 (52%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F +L + +++K G PT IQ + +P+ L+G D++A ++TGSGKT AFL+P LQR
Sbjct: 3 FTDFSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPALQR 62
Query: 85 L--NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
+ + + + R LIL PTR+LA Q + L T + ++GG++ Q + LA+
Sbjct: 63 VISTRALSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKALAK 122
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSEN--R 200
P I+ATPGR+ HL E +++ L +E ++ DEAD + +GFA QL K + + +++ R
Sbjct: 123 EPHFIVATPGRIADHL-EQKNLFLNGLELLILDEADRMLDLGFAPQL-KAINEAADHKRR 180
Query: 201 QTLLFSATLP-SALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI 259
QTL+FSATL S + E A A L++P V + D+ + + ALL +
Sbjct: 181 QTLMFSATLDHSEINEIAAALLKNPLHVAIGTAHAEHQDISQRIYLCDHLDHKEALLSRL 240
Query: 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319
S +Q +IF +T+ E L +G + G++ Q AR + +F +
Sbjct: 241 LSD-ESHKQVIIFTATRADTERLAAKLSAQGFATAALSGELKQAARNQIMDQFARGQQQI 299
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVXXXXXXXXXXXXFSFVTSEDMAYLL 379
L+ TDVA+RG+D+ + VIN+D P + +VHR+ S V +D
Sbjct: 300 LVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKDWDSFK 359
Query: 380 DLHLFLSK 387
+ LFL K
Sbjct: 360 KVQLFLRK 367
WARNING: HSPs involving 649 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.133 0.377 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 786 728 0.00086 121 3 11 22 0.40 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 899
No. of states in DFA: 615 (65 KB)
Total size of DFA: 331 KB (2168 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 67.87u 0.12s 67.99t Elapsed: 00:00:03
Total cpu time: 67.93u 0.12s 68.05t Elapsed: 00:00:04
Start: Fri May 10 06:44:17 2013 End: Fri May 10 06:44:21 2013
WARNINGS ISSUED: 2