BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003924
(786 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359492294|ref|XP_002279081.2| PREDICTED: putative DEAD-box ATP-dependent RNA helicase 29-like
[Vitis vinifera]
Length = 784
Score = 1337 bits (3459), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 660/783 (84%), Positives = 709/783 (90%), Gaps = 7/783 (0%)
Query: 4 VSSKAELKRREKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADV 63
VSSKAELKRREKQKKK++SGGFESL LSPNV+RAIKRKGY+VPTPIQRKTMPLILSG DV
Sbjct: 8 VSSKAELKRREKQKKKARSGGFESLGLSPNVYRAIKRKGYRVPTPIQRKTMPLILSGCDV 67
Query: 64 VAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLR 123
VAMARTGSGKTAAFL+PML+RL QHVPQ GVRALILSPTRDLALQTLKFTKEL RYTD+R
Sbjct: 68 VAMARTGSGKTAAFLIPMLERLKQHVPQTGVRALILSPTRDLALQTLKFTKELARYTDVR 127
Query: 124 ISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM 183
ISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEV+DMSL++VEYVVFDEADCLFGM
Sbjct: 128 ISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVDDMSLRTVEYVVFDEADCLFGM 187
Query: 184 GFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAF 243
GFAEQLHKIL QLS+NRQTLLFSATLPSALAEFAKAGL+DP LVRLD+DTKISPDLK+ F
Sbjct: 188 GFAEQLHKILAQLSDNRQTLLFSATLPSALAEFAKAGLQDPQLVRLDLDTKISPDLKVNF 247
Query: 244 FTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQD 303
FTLR EEK AALLY+IRE ISSDQQTLIFVSTKHHVEFLNVLFREEG+E SVCYGDMDQD
Sbjct: 248 FTLRHEEKLAALLYLIREQISSDQQTLIFVSTKHHVEFLNVLFREEGIEASVCYGDMDQD 307
Query: 304 ARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRT 363
ARKIH+SRFR+RKTM LIVTDVAARGIDIPLLDNV+NWDFPPKPKIFVHRVGRAARAGRT
Sbjct: 308 ARKIHISRFRSRKTMLLIVTDVAARGIDIPLLDNVVNWDFPPKPKIFVHRVGRAARAGRT 367
Query: 364 GTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRF 423
GTAFSFVTSEDM YLLDLHLFLSKPIRAAP+EEEVL D D VMSKIDQ +ANG T+YGR
Sbjct: 368 GTAFSFVTSEDMPYLLDLHLFLSKPIRAAPTEEEVLQDPDEVMSKIDQIVANGGTVYGRL 427
Query: 424 PQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLH 483
PQTVIDLVSDRVRE++DSSA+L SLQ+TCTNAFRLYSKTKP PS+ESIRR KDLPREGLH
Sbjct: 428 PQTVIDLVSDRVRELVDSSAELASLQKTCTNAFRLYSKTKPSPSRESIRRAKDLPREGLH 487
Query: 484 PMFKNVLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAV 543
P+FKNVL GGELMALAFSERLKAFRPKQTILEAEGEAA+SK+ QGP+ VDVMKKKRA+
Sbjct: 488 PIFKNVLGGGELMALAFSERLKAFRPKQTILEAEGEAAKSKNFQGPA---VDVMKKKRAI 544
Query: 544 HEKIINLVHQQRSSKSMEKEVEPEADSLMAKEIKETHGSKRKAKTFKDEEYFISSVPTNH 603
HEK+INLV QQRSS + KEVEPE KE K SKRKAKTFKDEEYFISSVPTN
Sbjct: 545 HEKVINLVQQQRSSDHVAKEVEPEMAYPKDKEKKGGSSSKRKAKTFKDEEYFISSVPTNR 604
Query: 604 HMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVS 663
H EAGLSVR+++GFG +RLEAAVLDLVADDS GLQKQK VYHWDKRGKKYIKLNNGERV+
Sbjct: 605 HAEAGLSVRANEGFGSSRLEAAVLDLVADDSSGLQKQKSVYHWDKRGKKYIKLNNGERVT 664
Query: 664 ASGKVVKTESGAKVKATKTGIYKKWKERSHKKVYLKGASNEGNAEETTSVPGGRHLGGNN 723
ASGK +KTESG+KVKATKTGIYKKWKERSH K+ LKG SNEGNAE T+S G L G N
Sbjct: 665 ASGK-IKTESGSKVKATKTGIYKKWKERSHNKISLKGTSNEGNAEATSSA-GNHQLHGGN 722
Query: 724 RKFRGGKNQQRSVPNAHVCSEIKDLDQVRKERQKKADRIAFMKGKTQKG-KKFSKNGKRG 782
K RG KN RS+PNAHV SEIKD +QVRK+RQKKA+RI+ MK K KG KKF KNGKRG
Sbjct: 723 WKLRGRKN-HRSMPNAHVRSEIKDSEQVRKDRQKKANRISHMKSKPMKGNKKFGKNGKRG 781
Query: 783 KPR 785
K +
Sbjct: 782 KSK 784
>gi|255582203|ref|XP_002531894.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223528461|gb|EEF30493.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 789
Score = 1333 bits (3449), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 643/763 (84%), Positives = 704/763 (92%), Gaps = 2/763 (0%)
Query: 3 LVSSKAELKRREKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGAD 62
LVSSKAELK ++ KKK+KSGGFESLNLSPNV+ +KRKGY+VPTPIQRKTMP+ILSG+D
Sbjct: 7 LVSSKAELKHKQNLKKKAKSGGFESLNLSPNVYNGVKRKGYRVPTPIQRKTMPIILSGSD 66
Query: 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDL 122
VVAMARTGSGKTAAFL+PML+RL QHV QGG RALILSPTRDLALQTLKFTKELGR+TDL
Sbjct: 67 VVAMARTGSGKTAAFLIPMLERLKQHVSQGGARALILSPTRDLALQTLKFTKELGRFTDL 126
Query: 123 RISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG 182
R SLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEV+DMSL++VEYVVFDEAD LFG
Sbjct: 127 RASLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVDDMSLRTVEYVVFDEADSLFG 186
Query: 183 MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLA 242
MGFAEQLH+IL QLSENRQTLLFSATLPSALAEFAKAGLRDP LVRLDVDTKISPDLK
Sbjct: 187 MGFAEQLHQILTQLSENRQTLLFSATLPSALAEFAKAGLRDPQLVRLDVDTKISPDLKTV 246
Query: 243 FFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQ 302
FFTLRQEEK+AALLY++REHISSDQQTLIFVSTKHHVEFLN+LFREEG+EPSVCYGDMDQ
Sbjct: 247 FFTLRQEEKYAALLYLVREHISSDQQTLIFVSTKHHVEFLNILFREEGIEPSVCYGDMDQ 306
Query: 303 DARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGR 362
DARKIHVSRFRA+KTM LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGR
Sbjct: 307 DARKIHVSRFRAQKTMLLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGR 366
Query: 363 TGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGR 422
TGTAFSFVTSEDM YLLDLHLFLSKPIRAAP+EEEV+ DMD VM KI++A+ANGETIYGR
Sbjct: 367 TGTAFSFVTSEDMPYLLDLHLFLSKPIRAAPTEEEVVKDMDRVMMKINEAVANGETIYGR 426
Query: 423 FPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGL 482
FPQTV+DLVSDRVRE+IDSSA+L SLQ+TCTNAFRLY+KTKPLP+KESIRR KDLP EG+
Sbjct: 427 FPQTVLDLVSDRVREVIDSSAELTSLQKTCTNAFRLYTKTKPLPAKESIRRVKDLPHEGI 486
Query: 483 HPMFKNVLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRA 542
HP+FKN L GGEL ALAFSERLKAFRPKQTILEAEGEAA+SK+ +GPSSQWVDVMK+KRA
Sbjct: 487 HPIFKNGLGGGELTALAFSERLKAFRPKQTILEAEGEAAKSKNARGPSSQWVDVMKRKRA 546
Query: 543 VHEKIINLVHQQRSSKSMEKEVEPEADSLMAKEIKETHGSKRKAKTFKDEEYFISSVPTN 602
+HEKIINLVHQ RS + +KEVE E S KE KE GSKRKAK+FKDEEY+ISSVPTN
Sbjct: 547 IHEKIINLVHQHRSIQQEDKEVESEIPSSSGKEKKEARGSKRKAKSFKDEEYYISSVPTN 606
Query: 603 HHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERV 662
HH EAGLSVR+++GFG NRLEAAVLDLVADDSGG+QKQK VYHWDKRGKKYIKLNNGERV
Sbjct: 607 HHTEAGLSVRANEGFGSNRLEAAVLDLVADDSGGMQKQKTVYHWDKRGKKYIKLNNGERV 666
Query: 663 SASGKVVKTESGAKVKATKTGIYKKWKERSHKKVYLKGASNEGNAEETTSVPGGRHLGGN 722
+ASGK VKTE GAKVKA KTGIYKKWKERSH+KV LKGAS+EGNAE+T++ G L GN
Sbjct: 667 TASGK-VKTEGGAKVKANKTGIYKKWKERSHRKVSLKGASDEGNAEQTSTFSGDNRLRGN 725
Query: 723 NRKFRGGKNQQRSVPNAHVCSEIKDLDQVRKERQKKADRIAFM 765
NRKF+GGK +Q +PNA+V SEIK L+QVRKERQKKA +++ M
Sbjct: 726 NRKFKGGK-KQNFMPNANVRSEIKSLEQVRKERQKKASQMSHM 767
>gi|302142729|emb|CBI19932.3| unnamed protein product [Vitis vinifera]
Length = 786
Score = 1332 bits (3446), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 660/785 (84%), Positives = 709/785 (90%), Gaps = 9/785 (1%)
Query: 4 VSSKAELKRREKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADV 63
VSSKAELKRREKQKKK++SGGFESL LSPNV+RAIKRKGY+VPTPIQRKTMPLILSG DV
Sbjct: 8 VSSKAELKRREKQKKKARSGGFESLGLSPNVYRAIKRKGYRVPTPIQRKTMPLILSGCDV 67
Query: 64 VAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLR 123
VAMARTGSGKTAAFL+PML+RL QHVPQ GVRALILSPTRDLALQTLKFTKEL RYTD+R
Sbjct: 68 VAMARTGSGKTAAFLIPMLERLKQHVPQTGVRALILSPTRDLALQTLKFTKELARYTDVR 127
Query: 124 ISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM 183
ISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEV+DMSL++VEYVVFDEADCLFGM
Sbjct: 128 ISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVDDMSLRTVEYVVFDEADCLFGM 187
Query: 184 GFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAF 243
GFAEQLHKIL QLS+NRQTLLFSATLPSALAEFAKAGL+DP LVRLD+DTKISPDLK+ F
Sbjct: 188 GFAEQLHKILAQLSDNRQTLLFSATLPSALAEFAKAGLQDPQLVRLDLDTKISPDLKVNF 247
Query: 244 FTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQD 303
FTLR EEK AALLY+IRE ISSDQQTLIFVSTKHHVEFLNVLFREEG+E SVCYGDMDQD
Sbjct: 248 FTLRHEEKLAALLYLIREQISSDQQTLIFVSTKHHVEFLNVLFREEGIEASVCYGDMDQD 307
Query: 304 ARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRT 363
ARKIH+SRFR+RKTM LIVTDVAARGIDIPLLDNV+NWDFPPKPKIFVHRVGRAARAGRT
Sbjct: 308 ARKIHISRFRSRKTMLLIVTDVAARGIDIPLLDNVVNWDFPPKPKIFVHRVGRAARAGRT 367
Query: 364 GTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRF 423
GTAFSFVTSEDM YLLDLHLFLSKPIRAAP+EEEVL D D VMSKIDQ +ANG T+YGR
Sbjct: 368 GTAFSFVTSEDMPYLLDLHLFLSKPIRAAPTEEEVLQDPDEVMSKIDQIVANGGTVYGRL 427
Query: 424 PQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLH 483
PQTVIDLVSDRVRE++DSSA+L SLQ+TCTNAFRLYSKTKP PS+ESIRR KDLPREGLH
Sbjct: 428 PQTVIDLVSDRVRELVDSSAELASLQKTCTNAFRLYSKTKPSPSRESIRRAKDLPREGLH 487
Query: 484 PMFKNVLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAV 543
P+FKNVL GGELMALAFSERLKAFRPKQTILEAEGEAA+SK+ QGP+ VDVMKKKRA+
Sbjct: 488 PIFKNVLGGGELMALAFSERLKAFRPKQTILEAEGEAAKSKNFQGPA---VDVMKKKRAI 544
Query: 544 HEKIINLVHQQRSSKSMEK--EVEPEADSLMAKEIKETHGSKRKAKTFKDEEYFISSVPT 601
HEK+INLV QQRSS + K EVEPE KE K SKRKAKTFKDEEYFISSVPT
Sbjct: 545 HEKVINLVQQQRSSDHVAKMQEVEPEMAYPKDKEKKGGSSSKRKAKTFKDEEYFISSVPT 604
Query: 602 NHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGER 661
N H EAGLSVR+++GFG +RLEAAVLDLVADDS GLQKQK VYHWDKRGKKYIKLNNGER
Sbjct: 605 NRHAEAGLSVRANEGFGSSRLEAAVLDLVADDSSGLQKQKSVYHWDKRGKKYIKLNNGER 664
Query: 662 VSASGKVVKTESGAKVKATKTGIYKKWKERSHKKVYLKGASNEGNAEETTSVPGGRHLGG 721
V+ASGK +KTESG+KVKATKTGIYKKWKERSH K+ LKG SNEGNAE T+S G L G
Sbjct: 665 VTASGK-IKTESGSKVKATKTGIYKKWKERSHNKISLKGTSNEGNAEATSSA-GNHQLHG 722
Query: 722 NNRKFRGGKNQQRSVPNAHVCSEIKDLDQVRKERQKKADRIAFMKGKTQKG-KKFSKNGK 780
N K RG KN RS+PNAHV SEIKD +QVRK+RQKKA+RI+ MK K KG KKF KNGK
Sbjct: 723 GNWKLRGRKN-HRSMPNAHVRSEIKDSEQVRKDRQKKANRISHMKSKPMKGNKKFGKNGK 781
Query: 781 RGKPR 785
RGK +
Sbjct: 782 RGKSK 786
>gi|449511783|ref|XP_004164052.1| PREDICTED: putative DEAD-box ATP-dependent RNA helicase 29-like
[Cucumis sativus]
Length = 789
Score = 1273 bits (3293), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 623/787 (79%), Positives = 699/787 (88%), Gaps = 13/787 (1%)
Query: 4 VSSKAELKRREKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADV 63
VSSKAELKRREKQ+KK+KSGGFESL LS NVFR IKRKGY+VPTPIQRKTMPLILSGADV
Sbjct: 10 VSSKAELKRREKQQKKAKSGGFESLGLSANVFRGIKRKGYRVPTPIQRKTMPLILSGADV 69
Query: 64 VAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLR 123
VAMARTGSGKTAAFLVPML+RL QH PQGGVRALILSPTRDLALQTLKFTKELG++TDLR
Sbjct: 70 VAMARTGSGKTAAFLVPMLERLKQHEPQGGVRALILSPTRDLALQTLKFTKELGKFTDLR 129
Query: 124 ISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM 183
ISLLVGGDSME+QFEELAQ+PD+IIATPGRLMHHL+EV+DM+L++VEYVVFDEADCLF M
Sbjct: 130 ISLLVGGDSMETQFEELAQSPDVIIATPGRLMHHLAEVDDMTLRTVEYVVFDEADCLFDM 189
Query: 184 GFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAF 243
GFAEQLHKIL QLSENRQTLLFSATLPS LAEFAKAGLRDP LVRLD+DTKISPDLK+ F
Sbjct: 190 GFAEQLHKILAQLSENRQTLLFSATLPSVLAEFAKAGLRDPQLVRLDLDTKISPDLKVVF 249
Query: 244 FTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQD 303
FTLRQEEK+AALLY+IRE IS+DQQ+LIFVST+HHVEFLNVLFREEG+EPSVCYG+MDQD
Sbjct: 250 FTLRQEEKNAALLYLIREQISADQQSLIFVSTRHHVEFLNVLFREEGIEPSVCYGEMDQD 309
Query: 304 ARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRT 363
ARKIH+SRFRAR+TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRT
Sbjct: 310 ARKIHISRFRARRTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRT 369
Query: 364 GTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRF 423
GTAFSFVTSED+ LLDLHLFLSKPIRAAP+EEEVLLD +GV SKID AIA+GET+YGR
Sbjct: 370 GTAFSFVTSEDLPNLLDLHLFLSKPIRAAPTEEEVLLDKEGVFSKIDHAIASGETVYGRL 429
Query: 424 PQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLH 483
PQTVIDL SDR+RE IDSSADL SLQ+TC+NAFR+YSK+KPLPSKESIRR KDLPREGLH
Sbjct: 430 PQTVIDLASDRIRETIDSSADLISLQKTCSNAFRMYSKSKPLPSKESIRRAKDLPREGLH 489
Query: 484 PMFKNVLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAV 543
P+FK LEGGELMALAFSERLK FRPKQTILEAEGE ++S+H QGP +QWVDVMK+KRA+
Sbjct: 490 PIFKTALEGGELMALAFSERLKTFRPKQTILEAEGETSKSRHRQGP-NQWVDVMKRKRAI 548
Query: 544 HEKIINLVHQQRSSKSMEKEVEPEADSLMAKEIKETHGSK-RKAKTFKDEEYFISSVPTN 602
HE++INLVHQQ+ +K +E+E+ E S K+ K G K RK +FKDEE++I+SVPTN
Sbjct: 549 HEEVINLVHQQQFAKHVEEELPLENISPKDKQKKGPRGLKRRKTTSFKDEEFYINSVPTN 608
Query: 603 HHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERV 662
HH EAGL+V+ DQGFG NRL+ AVLDLVADDS G+QK K VYHWDKR KKY+KLNNG+RV
Sbjct: 609 HHTEAGLTVKGDQGFGSNRLDNAVLDLVADDSSGMQKNKSVYHWDKRSKKYVKLNNGDRV 668
Query: 663 SASGKVVKTESGAKVKATKTGIYKKWKERSHKKVYLKGASN---EGNAEETTSVPGGRHL 719
+ASGK +KTESGAKVKA KTGIYKKWKERSH K+ LKG SN +G+A T G +
Sbjct: 669 TASGK-IKTESGAKVKANKTGIYKKWKERSHNKISLKGISNGEHDGDAINT----GNQRF 723
Query: 720 GGNNRKFRGGKNQQRSVPNAHVCSEIKDLDQVRKERQKKADRIAFMKGKTQKGKKFSKNG 779
GN R+F GKN+ SVPNAHV E+K+LDQ+RKERQKKAD++ M K + K+ K+G
Sbjct: 724 SGNKRRFGQGKNKH-SVPNAHVRPEVKNLDQIRKERQKKADKVQHM--KNNRPKRGKKSG 780
Query: 780 KRGKPRK 786
KRG RK
Sbjct: 781 KRGSKRK 787
>gi|449449653|ref|XP_004142579.1| PREDICTED: putative DEAD-box ATP-dependent RNA helicase 29-like
[Cucumis sativus]
Length = 789
Score = 1271 bits (3290), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 622/787 (79%), Positives = 699/787 (88%), Gaps = 13/787 (1%)
Query: 4 VSSKAELKRREKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADV 63
VSSKAELKRREKQ+KK+KSGGFESL LS NVFR IKRKGY+VPTPIQRKTMPLILSGADV
Sbjct: 10 VSSKAELKRREKQQKKAKSGGFESLGLSANVFRGIKRKGYRVPTPIQRKTMPLILSGADV 69
Query: 64 VAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLR 123
VAMARTGSGKTAAFLVPML+RL QH PQGGVRALILSPTRDLALQTLKFTKELG++TDLR
Sbjct: 70 VAMARTGSGKTAAFLVPMLERLKQHEPQGGVRALILSPTRDLALQTLKFTKELGKFTDLR 129
Query: 124 ISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM 183
ISLLVGGDSME+QFEELAQ+PD+IIATPGRLMHHL+EV+DM+L++VEYVVFDEADCLF M
Sbjct: 130 ISLLVGGDSMETQFEELAQSPDVIIATPGRLMHHLAEVDDMTLRTVEYVVFDEADCLFDM 189
Query: 184 GFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAF 243
GFAEQLHKIL QLSENRQTLLFSATLPS LAEFAKAGLRDP LVRLD+DTKISPDLK+ F
Sbjct: 190 GFAEQLHKILAQLSENRQTLLFSATLPSVLAEFAKAGLRDPQLVRLDLDTKISPDLKVVF 249
Query: 244 FTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQD 303
FTLRQEEK+AALLY+IRE IS+DQQ+LIFVST+HHVEFLNVLFREEG+EPSVCYG+MDQD
Sbjct: 250 FTLRQEEKNAALLYLIREQISADQQSLIFVSTRHHVEFLNVLFREEGIEPSVCYGEMDQD 309
Query: 304 ARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRT 363
ARKIH+SRFRAR+TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRT
Sbjct: 310 ARKIHISRFRARRTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRT 369
Query: 364 GTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRF 423
GTAFSFVTSED+ LLDLHLFLSKPIRAAP+EEEVLLD +GV SKID AIA+GET+YGR
Sbjct: 370 GTAFSFVTSEDLPNLLDLHLFLSKPIRAAPTEEEVLLDKEGVFSKIDHAIASGETVYGRL 429
Query: 424 PQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLH 483
PQTVIDL SDR+RE IDSSADL SLQ+TC+NAFR+YSK+KPLPSKESIRR KDLPREGLH
Sbjct: 430 PQTVIDLASDRIRETIDSSADLISLQKTCSNAFRMYSKSKPLPSKESIRRAKDLPREGLH 489
Query: 484 PMFKNVLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAV 543
P+FK LEGGELMALAFSERLK FRPKQTILEAEGE ++S+H QGP +QWVDVMK+KRA+
Sbjct: 490 PIFKTALEGGELMALAFSERLKTFRPKQTILEAEGETSKSRHRQGP-NQWVDVMKRKRAI 548
Query: 544 HEKIINLVHQQRSSKSMEKEVEPEADSLMAKEIKETHGSK-RKAKTFKDEEYFISSVPTN 602
HE++INLVHQQ+ +K +E+E+ E S K+ K G K RK +FKDEE++I+SVPTN
Sbjct: 549 HEEVINLVHQQQFAKHVEEELPLENISPKDKQKKGPRGLKRRKTTSFKDEEFYINSVPTN 608
Query: 603 HHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERV 662
HH EAGL+V+ DQGFG NRL+ AVLDLVADDS G+QK K VYHWDKR KKY+KLNNG+RV
Sbjct: 609 HHTEAGLTVKGDQGFGSNRLDNAVLDLVADDSSGMQKNKSVYHWDKRSKKYVKLNNGDRV 668
Query: 663 SASGKVVKTESGAKVKATKTGIYKKWKERSHKKVYLKGASN---EGNAEETTSVPGGRHL 719
+ASGK +KTESGAKVKA KTGIYKKWKERSH K+ LKG SN +G+A T G +
Sbjct: 669 TASGK-IKTESGAKVKANKTGIYKKWKERSHNKISLKGISNGEHDGDAINT----GNQRF 723
Query: 720 GGNNRKFRGGKNQQRSVPNAHVCSEIKDLDQVRKERQKKADRIAFMKGKTQKGKKFSKNG 779
GN R+F G+N+ SVPNAHV E+K+LDQ+RKERQKKAD++ M K + K+ K+G
Sbjct: 724 SGNKRRFGQGRNKH-SVPNAHVRPEVKNLDQIRKERQKKADKVQHM--KNNRPKRGKKSG 780
Query: 780 KRGKPRK 786
KRG RK
Sbjct: 781 KRGSKRK 787
>gi|356558698|ref|XP_003547640.1| PREDICTED: putative DEAD-box ATP-dependent RNA helicase 29-like
[Glycine max]
Length = 778
Score = 1253 bits (3242), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 601/755 (79%), Positives = 678/755 (89%), Gaps = 4/755 (0%)
Query: 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPM 81
SGGFESL L+PNVF+ IKRKGYKVPTPIQRKTMPLILSG+DVVAMARTGSGKTAAFLVPM
Sbjct: 17 SGGFESLGLNPNVFKGIKRKGYKVPTPIQRKTMPLILSGSDVVAMARTGSGKTAAFLVPM 76
Query: 82 LQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L RLNQH+PQ GVRALILSPTRDLALQTLKFTKELG +TDLR+SLLVGGDSMESQFEELA
Sbjct: 77 LHRLNQHIPQSGVRALILSPTRDLALQTLKFTKELGHFTDLRVSLLVGGDSMESQFEELA 136
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
Q+PDIIIATPGRLMHHLSEV+DMSL+SVEYVVFDEADCLFGMGFAEQLH+IL QL ENRQ
Sbjct: 137 QSPDIIIATPGRLMHHLSEVDDMSLRSVEYVVFDEADCLFGMGFAEQLHQILAQLGENRQ 196
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
TLLFSATLPSALAEFAKAGLRDP L+RLD++T+ISPDLKLAFFTLRQEEK++ALLY+IRE
Sbjct: 197 TLLFSATLPSALAEFAKAGLRDPQLLRLDLETRISPDLKLAFFTLRQEEKYSALLYLIRE 256
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
HI SDQQTLIFVSTKHHVEFLN+LFREEG+EPSVCYGDMDQDARKIHVSRFR+RKTM LI
Sbjct: 257 HIGSDQQTLIFVSTKHHVEFLNLLFREEGIEPSVCYGDMDQDARKIHVSRFRSRKTMLLI 316
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTA+SFVT EDMAYLLDL
Sbjct: 317 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAYSFVTPEDMAYLLDL 376
Query: 382 HLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDS 441
HLFLSKPI+ AP+EEEVL DM+GV+S+ +QA+AN ETIYGRFPQ VIDLVSDRVREIID+
Sbjct: 377 HLFLSKPIKPAPTEEEVLQDMEGVLSRCEQAMANRETIYGRFPQKVIDLVSDRVREIIDT 436
Query: 442 SADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVLEGGELMALAFS 501
SA+L LQRTC NAFRLYSKTKPLP+KESIRR KDLP EGLHPMF NVLE GEL ALAFS
Sbjct: 437 SAELELLQRTCKNAFRLYSKTKPLPAKESIRRVKDLPHEGLHPMFMNVLETGELTALAFS 496
Query: 502 ERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKS-M 560
E LK FRPKQTILEAEGEAA+ KH QGPS QW DVMK+KRA+HE IINLVH+Q+ SKS
Sbjct: 497 EHLKKFRPKQTILEAEGEAAKLKHQQGPSGQWADVMKRKRAIHENIINLVHEQQQSKSNK 556
Query: 561 EKEVEPEADSLMAKEIKETHGSKRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLN 620
EKE++ E M K K GSKRK ++FKDE+++ISS+P N HMEAGLSV++++ F N
Sbjct: 557 EKEIQLEISPSMEKGRKAACGSKRKPQSFKDEDHYISSIPKNQHMEAGLSVKANEDFASN 616
Query: 621 RLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT 680
RLEAAVLDLVADD G+QKQ+ +YHWDKRGKKYIKLNNG+RV+A+GK +KTESGAK KA
Sbjct: 617 RLEAAVLDLVADDGAGIQKQRSMYHWDKRGKKYIKLNNGDRVAANGK-IKTESGAKTKAN 675
Query: 681 KTGIYKKWKERSHKKVYLKGASNEGNAEETTSVPGGRHLGGNNRKFRGGKNQQRSVPNAH 740
KTGIYKKWKERSH ++ LKG +N G+ +++TS+ G + L G F+G K +Q S+PNAH
Sbjct: 676 KTGIYKKWKERSHVRISLKG-TNNGDPQDSTSLTGTQRLHGGRSNFKGSK-KQHSMPNAH 733
Query: 741 VCSEIKDLDQVRKERQKKADRIAFMKGKTQKGKKF 775
V SE+KD+DQ+RKERQ KA+R++++K K+ KGK+F
Sbjct: 734 VRSELKDMDQIRKERQTKANRVSYIKSKSTKGKRF 768
>gi|356506148|ref|XP_003521849.1| PREDICTED: putative DEAD-box ATP-dependent RNA helicase 29-like
[Glycine max]
Length = 778
Score = 1247 bits (3227), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 598/750 (79%), Positives = 673/750 (89%), Gaps = 6/750 (0%)
Query: 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPM 81
SGGFESL L+PNVF+ IKRKGYKVPTPIQRKTMPLILSG+DVVAMARTGSGKTAAFLVPM
Sbjct: 17 SGGFESLGLNPNVFKGIKRKGYKVPTPIQRKTMPLILSGSDVVAMARTGSGKTAAFLVPM 76
Query: 82 LQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L RLNQH+PQ GVRALILSPTRDLALQTLKFTKELG +TDLR+SLLVGGDSME QFEELA
Sbjct: 77 LHRLNQHIPQSGVRALILSPTRDLALQTLKFTKELGHFTDLRVSLLVGGDSMEIQFEELA 136
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
Q+PDIIIATPGRLMHHLSEV+DMSL+SVEYVVFDEADCLFGMGFAEQLH+IL QL ENRQ
Sbjct: 137 QSPDIIIATPGRLMHHLSEVDDMSLRSVEYVVFDEADCLFGMGFAEQLHQILAQLGENRQ 196
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
TLLFSATLPSALAEFAKAGLRDP LVRLD++T+ISPDLKLAFFTLRQEEK++ALLY++RE
Sbjct: 197 TLLFSATLPSALAEFAKAGLRDPQLVRLDLETRISPDLKLAFFTLRQEEKYSALLYLVRE 256
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
HI SDQQTLIFVSTKHHVEFLNVLFREEG+EPSVCYGDMDQDARKIHVSRFRARKTM LI
Sbjct: 257 HIGSDQQTLIFVSTKHHVEFLNVLFREEGIEPSVCYGDMDQDARKIHVSRFRARKTMLLI 316
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTA+SFVT EDMAYLLDL
Sbjct: 317 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAYSFVTPEDMAYLLDL 376
Query: 382 HLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDS 441
HLFLSKPI+ AP+EEE L DMDGVMS+ +QA+AN ETIYGRFPQ VIDLVSDRVREIID+
Sbjct: 377 HLFLSKPIKPAPTEEEFLQDMDGVMSRCEQAMANRETIYGRFPQKVIDLVSDRVREIIDT 436
Query: 442 SADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVLEGGELMALAFS 501
SA+L LQRTC NAFRLYSKTKPLP+KESIRR KDLP EGLHPMF NVLE GEL ALAFS
Sbjct: 437 SAELELLQRTCKNAFRLYSKTKPLPAKESIRRVKDLPHEGLHPMFMNVLETGELTALAFS 496
Query: 502 ERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKSM- 560
E LK FRPKQTILEAEGEAA+SKH QGPS QWVDVMK+KRA+HE IINLV +Q+ SKS
Sbjct: 497 EHLKKFRPKQTILEAEGEAAKSKHQQGPSGQWVDVMKRKRAIHENIINLVREQQQSKSNK 556
Query: 561 -EKEVEPEADSLMAKEIKETHGSKRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGL 619
++E++ E M K K GSKRK ++FKDE+++ISS+P N HMEAGL+V++++ F
Sbjct: 557 EKEEIQSEISPSMEKGRKAARGSKRKPQSFKDEDHYISSIPKNQHMEAGLTVKANEDFAS 616
Query: 620 NRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKA 679
NRLEAAVLDLVADD G++KQ+ +YHWDKRGKKYIKLNNG+RV+A+GK +KTESGAK KA
Sbjct: 617 NRLEAAVLDLVADDGTGIKKQRSMYHWDKRGKKYIKLNNGDRVAANGK-IKTESGAKTKA 675
Query: 680 TKTGIYKKWKERSHKKVYLKGASNEGNAEETTSVPGGRHLGGNNRKFRGGKNQQRSVPNA 739
KTGIYKKWKERSH ++ LKG +N+G+++E+TS+ G G R F+G K +Q S+PNA
Sbjct: 676 NKTGIYKKWKERSHGRISLKGTNNDGDSQESTSLAGSYQRG--RRNFKGSK-KQHSMPNA 732
Query: 740 HVCSEIKDLDQVRKERQKKADRIAFMKGKT 769
HV SEIKD+DQ+RKERQ KA+R++++K K+
Sbjct: 733 HVRSEIKDMDQIRKERQTKANRVSYIKSKS 762
>gi|357474503|ref|XP_003607536.1| hypothetical protein MTR_4g079320 [Medicago truncatula]
gi|355508591|gb|AES89733.1| hypothetical protein MTR_4g079320 [Medicago truncatula]
Length = 787
Score = 1178 bits (3047), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 578/750 (77%), Positives = 648/750 (86%), Gaps = 13/750 (1%)
Query: 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQ 83
GFE+L L+ +VF IKRKGYKVPTPIQRKTMPLILSG DVVAMARTGSGKTAAFLVPML
Sbjct: 19 GFETLGLNRDVFSGIKRKGYKVPTPIQRKTMPLILSGIDVVAMARTGSGKTAAFLVPMLH 78
Query: 84 RLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
RLNQHVPQGGVR LILSPTRDLA QTLKFTKELG +TDLR+SLLVGGDSMESQFEELAQN
Sbjct: 79 RLNQHVPQGGVRGLILSPTRDLAQQTLKFTKELGHFTDLRVSLLVGGDSMESQFEELAQN 138
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
PDIIIATPGRLMHHLSEV+DMSL+ VEYVVFDEADCLFGMGFAEQLH+IL QL ENRQTL
Sbjct: 139 PDIIIATPGRLMHHLSEVDDMSLRKVEYVVFDEADCLFGMGFAEQLHQILAQLGENRQTL 198
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
LFSATLPSALAEFAKAGLRDP LVRLD++TKISPDLKL FFTLRQEEK+AALLY+IRE I
Sbjct: 199 LFSATLPSALAEFAKAGLRDPRLVRLDLETKISPDLKLVFFTLRQEEKYAALLYLIRELI 258
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
SD+QTLIFVSTKHHVEFLN LF+ EG+ PSVCYGDMDQDARK HV+RFR+RKTM LIVT
Sbjct: 259 GSDEQTLIFVSTKHHVEFLNSLFQLEGIRPSVCYGDMDQDARKEHVARFRSRKTMLLIVT 318
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHL 383
D+AARGIDIPLLDNVINWDFPPKPKIFVHRVGR ARAGRTGTA+SF+T+EDMAYLLDLHL
Sbjct: 319 DIAARGIDIPLLDNVINWDFPPKPKIFVHRVGRVARAGRTGTAYSFLTAEDMAYLLDLHL 378
Query: 384 FLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSA 443
FLSKP++AAP+EEEVL DMDGVMS+ID + NGETIYGRFPQ VIDLVSDRVRE+ID+SA
Sbjct: 379 FLSKPVKAAPTEEEVLRDMDGVMSRIDDEMLNGETIYGRFPQKVIDLVSDRVREVIDTSA 438
Query: 444 DLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVLEGGELMALAFSER 503
+L +LQR C NAFRLYSKTKPLPSKESIRR KDLP EGLHP+F VL GEL A+AFSE
Sbjct: 439 ELEALQRACKNAFRLYSKTKPLPSKESIRRVKDLPHEGLHPIFNKVLGTGELTAIAFSEH 498
Query: 504 LKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKII-NLVH-----QQRSS 557
LK FRPKQTILEAEGEAA++K GPS WVDVMK+KRAVH+ II N H Q S
Sbjct: 499 LKNFRPKQTILEAEGEAAKAKRRAGPSGHWVDVMKRKRAVHDSIIVNEQHSKSNEHQSKS 558
Query: 558 KSMEKEVEPEADSLMAKEIKETHGSKRK--AKTFKDEEYFISSVPTNHHMEAGLSVRSDQ 615
S ++E +PE S M K ++ GSKRK ++FKDEEYFISS+P N HMEAGL+V++++
Sbjct: 559 NSEKEENQPEITSSMDKG-RKARGSKRKPNPESFKDEEYFISSIPQNQHMEAGLAVKANE 617
Query: 616 GFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGA 675
GF NRL+ AVLDL ADD G++KQK VYHWDKR KKYIKLNNG+RV+A+GK +KTESGA
Sbjct: 618 GFSSNRLDDAVLDLGADDGAGIKKQKSVYHWDKRSKKYIKLNNGDRVAANGK-IKTESGA 676
Query: 676 KVKATKTGIYKKWKERSHKKVYLKGASNEGNAEETTSVPGGRHLGGNNRKFRGGKNQQRS 735
K KA KTGIYKKWKERSH K+ LKG S +G+A+E+ S G GG N ++GGK +Q
Sbjct: 677 KTKANKTGIYKKWKERSHSKISLKGTSADGDAQESRSSRGSYQGGGRN--YKGGK-KQHL 733
Query: 736 VPNAHVCSEIKDLDQVRKERQKKADRIAFM 765
+PNAHV SEIKD+DQ+RKERQKKA +I++M
Sbjct: 734 MPNAHVRSEIKDMDQIRKERQKKASKISYM 763
>gi|334183955|ref|NP_177829.5| DEAD-box helicase domain-containing protein [Arabidopsis thaliana]
gi|75318355|sp|O49289.1|RH29_ARATH RecName: Full=Putative DEAD-box ATP-dependent RNA helicase 29
gi|2829912|gb|AAC00620.1| Similar ATP-dependent RNA Helicase [Arabidopsis thaliana]
gi|332197806|gb|AEE35927.1| DEAD-box helicase domain-containing protein [Arabidopsis thaliana]
Length = 845
Score = 1142 bits (2953), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 568/771 (73%), Positives = 665/771 (86%), Gaps = 18/771 (2%)
Query: 3 LVSSKAELKRREKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGAD 62
LVSS EL R+EKQKKK KSGGFESLNL PNVF AIK+KGYKVPTPIQRKTMPLILSG D
Sbjct: 8 LVSSVTELHRKEKQKKKGKSGGFESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVD 67
Query: 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDL 122
VVAMARTGSGKTAAFL+PML++L QHVPQGGVRALILSPTRDLA QTLKFTKELG++TDL
Sbjct: 68 VVAMARTGSGKTAAFLIPMLEKLKQHVPQGGVRALILSPTRDLAEQTLKFTKELGKFTDL 127
Query: 123 RISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG 182
R+SLLVGGDSME QFEEL + PD+IIATPGRLMH LSEV+DM+L++VEYVVFDEAD LFG
Sbjct: 128 RVSLLVGGDSMEDQFEELTKGPDVIIATPGRLMHLLSEVDDMTLRTVEYVVFDEADSLFG 187
Query: 183 MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLA 242
MGFAEQLH+IL QLSENRQTLLFSATLPSALAEFAKAGLR+P LVRLDV+ KISPDLKL+
Sbjct: 188 MGFAEQLHQILTQLSENRQTLLFSATLPSALAEFAKAGLREPQLVRLDVENKISPDLKLS 247
Query: 243 FFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQ 302
F T+R EEK++ALLY++REHISSDQQTLIFVSTKHHVEF+N LF+ E +EPSVCYGDMDQ
Sbjct: 248 FLTVRPEEKYSALLYLVREHISSDQQTLIFVSTKHHVEFVNSLFKLENIEPSVCYGDMDQ 307
Query: 303 DARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGR 362
DARKIHVSRFRARKTM LIVTD+AARGIDIPLLDNVINWDFPP+PKIFVHRVGRAARAGR
Sbjct: 308 DARKIHVSRFRARKTMLLIVTDIAARGIDIPLLDNVINWDFPPRPKIFVHRVGRAARAGR 367
Query: 363 TGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGR 422
TG A+SFVT EDM Y+LDLHLFLSKP+R AP+E+EVL +M+ VM+K QAI +G T+YGR
Sbjct: 368 TGCAYSFVTPEDMPYMLDLHLFLSKPVRPAPTEDEVLKNMEEVMTKTSQAIDSGVTVYGR 427
Query: 423 FPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGL 482
FPQ IDL+ +R RE+IDSSA+L+SL+RT T AFRLYSKTKP PSKESIRR KDLPREGL
Sbjct: 428 FPQKTIDLIFNRTREMIDSSAELDSLERTSTKAFRLYSKTKPSPSKESIRRAKDLPREGL 487
Query: 483 HPMFKNVLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRA 542
HP+F++++E GEL A++F +++K FRPKQTILEAEGE A+SKH++GP+ QWVDVMKKKRA
Sbjct: 488 HPIFRSIIETGELEAMSFFQKIKNFRPKQTILEAEGEVAKSKHVKGPAGQWVDVMKKKRA 547
Query: 543 VHEKIINLVHQQR---SSKSMEKEVEPEADSLMAK-EIKETHGSKRKAK-TFKDEEYFIS 597
+HE+IIN HQQ S+ +E E EP + E + G KRKA+ TFKD+E+FIS
Sbjct: 548 IHEEIINTRHQQNQKTSNNHLEMEAEPTTSFVDGTVEGSKVSGKKRKAQETFKDDEFFIS 607
Query: 598 SVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLN 657
S+P NHH EAGLS+R ++GFG NRL+AAVLDLVADD G+++Q+ YHWDK+GKKYIKLN
Sbjct: 608 SIPVNHHSEAGLSLRGNEGFGSNRLDAAVLDLVADDGQGIKQQQSNYHWDKKGKKYIKLN 667
Query: 658 NGERVSASGKVVKTESGAKVKATKTGIYKKWKERSHKKVYLKGASNEGNAEETTSVPGGR 717
NG+RV+ASGK +KTESGAK A KTGIYK+W+ERSHKKV + + G+A+ETT +
Sbjct: 668 NGDRVTASGK-IKTESGAKATAKKTGIYKRWQERSHKKV----SRDSGDADETTRM---- 718
Query: 718 HLGGNNRKFRGGKNQQRSVPNAHVCSEIKDLDQVRKERQKKADRIAFMKGK 768
+ R R GK +Q SVPNAHV SEIKDLDQVRKERQ+KA+++++++ K
Sbjct: 719 ----SGRGGRDGKRRQGSVPNAHVRSEIKDLDQVRKERQQKANKVSYLQSK 765
>gi|297842471|ref|XP_002889117.1| hypothetical protein ARALYDRAFT_316620 [Arabidopsis lyrata subsp.
lyrata]
gi|297334958|gb|EFH65376.1| hypothetical protein ARALYDRAFT_316620 [Arabidopsis lyrata subsp.
lyrata]
Length = 834
Score = 1134 bits (2933), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 564/771 (73%), Positives = 667/771 (86%), Gaps = 17/771 (2%)
Query: 3 LVSSKAELKRREKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGAD 62
LVSS EL R+EKQKKK KSGGFESLNL PNVF AIK+KGYKVPTPIQRKTMPLILSG D
Sbjct: 8 LVSSVTELHRKEKQKKKGKSGGFESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVD 67
Query: 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDL 122
VVAMARTGSGKTAAFL+PML++L QHVPQGGVRALILSPTRDLA QTLKFTKELG++TDL
Sbjct: 68 VVAMARTGSGKTAAFLIPMLEKLKQHVPQGGVRALILSPTRDLAEQTLKFTKELGKFTDL 127
Query: 123 RISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG 182
R+SLLVGGDSME QFEEL + PD+IIATPGRLMH LSEV+DM+L++VEYVVFDEAD LFG
Sbjct: 128 RVSLLVGGDSMEDQFEELTKGPDVIIATPGRLMHLLSEVDDMTLRTVEYVVFDEADSLFG 187
Query: 183 MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLA 242
MGFAEQLH+IL QLSENRQTLLFSATLPSALAEFAKAGLR+P LVRLDV+ KISPDL+L+
Sbjct: 188 MGFAEQLHQILTQLSENRQTLLFSATLPSALAEFAKAGLREPQLVRLDVENKISPDLRLS 247
Query: 243 FFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQ 302
F T+R EEK+AALLY++REHISSDQQTLIFVSTKHHVEF+N LF+ E +EPSVCYGDMDQ
Sbjct: 248 FLTVRPEEKYAALLYLVREHISSDQQTLIFVSTKHHVEFVNSLFKLENIEPSVCYGDMDQ 307
Query: 303 DARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGR 362
DARKIHVSRFRARKTM LIVTD+AARGIDIPLLDNVINWDFPP+PKIFVHRVGRAARAGR
Sbjct: 308 DARKIHVSRFRARKTMLLIVTDIAARGIDIPLLDNVINWDFPPRPKIFVHRVGRAARAGR 367
Query: 363 TGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGR 422
TG+A+SFVT ED+ Y+LDLHLFLSKP+R AP+E+EVL +M+ VM+K QAI +G T+YGR
Sbjct: 368 TGSAYSFVTPEDVPYMLDLHLFLSKPVRPAPTEDEVLKNMEEVMTKTSQAIDSGVTVYGR 427
Query: 423 FPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGL 482
FPQ IDL+ +R RE+IDSSA+L+SL+RT T AFRLYSKTKP PSKESIRR KDLPREGL
Sbjct: 428 FPQKTIDLIFNRTREMIDSSAELDSLERTSTKAFRLYSKTKPSPSKESIRRAKDLPREGL 487
Query: 483 HPMFKNVLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRA 542
HP+F++++E GEL A++F +++K FRPKQTILEAEGE A+SKH++GP+ QWVDVMKKKRA
Sbjct: 488 HPIFRSIIETGELEAMSFFQKIKNFRPKQTILEAEGEVAKSKHVKGPAGQWVDVMKKKRA 547
Query: 543 VHEKIINLVHQQR---SSKSMEKEVEPEAD-SLMAKEIKETHGSKRKAK-TFKDEEYFIS 597
+HE+IIN HQQ S+ +E E EP E + G KRKA+ +FKD++++IS
Sbjct: 548 IHEEIINTRHQQNQKSSNNHLEMEAEPTTSFDEGTIEGSKLSGKKRKAQESFKDDDFYIS 607
Query: 598 SVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLN 657
S+P NHH EAGLS+R ++GFG NRL+AAVLDLVADD G+++Q+ YHWDK+ KKYIKLN
Sbjct: 608 SIPVNHHSEAGLSLRGNEGFGSNRLDAAVLDLVADDGQGMKQQQSNYHWDKKSKKYIKLN 667
Query: 658 NGERVSASGKVVKTESGAKVKATKTGIYKKWKERSHKKVYLKGASNEGNAEETTSVPGGR 717
NG+RV+ASGK +KTESGAKVKA KTGIYK+W+ERSHKKV+ + + G+A+ETT +
Sbjct: 668 NGDRVTASGK-IKTESGAKVKANKTGIYKRWQERSHKKVF---SRDGGDADETTRM---- 719
Query: 718 HLGGNNRKFRGGKNQQRSVPNAHVCSEIKDLDQVRKERQKKADRIAFMKGK 768
+ R R GK +Q SVPNAHV SEIKDL+QVRKERQ+KA+++++++ K
Sbjct: 720 ----SGRGGRDGKRRQGSVPNAHVRSEIKDLEQVRKERQQKANKVSYLQSK 766
>gi|158513663|sp|A2YV85.2|RH29_ORYSI RecName: Full=DEAD-box ATP-dependent RNA helicase 29; Short=RNAH
Length = 851
Score = 1053 bits (2724), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 517/768 (67%), Positives = 631/768 (82%), Gaps = 17/768 (2%)
Query: 17 KKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAA 76
KKK+KSGGFES+ L V+R ++ KGY+VPTPIQRK MPLIL+G D+ AMARTGSGKTAA
Sbjct: 43 KKKAKSGGFESMGLCEEVYRGVRHKGYRVPTPIQRKAMPLILAGHDIAAMARTGSGKTAA 102
Query: 77 FLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQ 136
FLVPM+QRL +H G+RALILSPTRDLA QTLKF ++LG++TDL+ISL+VGGDSMESQ
Sbjct: 103 FLVPMIQRLRRHDAGAGIRALILSPTRDLATQTLKFAQQLGKFTDLKISLIVGGDSMESQ 162
Query: 137 FEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL 196
FEELA+NPDIIIATPGRL+HHL+EVED++L++VEYVVFDEAD LF +G +QLH IL +L
Sbjct: 163 FEELAENPDIIIATPGRLVHHLAEVEDLNLRTVEYVVFDEADSLFSLGLIQQLHDILHKL 222
Query: 197 SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALL 256
S+ RQTLLFSATLP ALA+FAKAGLRDP +VRLD+D KISPDLKLAFFTLRQEEK AALL
Sbjct: 223 SDTRQTLLFSATLPQALADFAKAGLRDPQIVRLDLDKKISPDLKLAFFTLRQEEKLAALL 282
Query: 257 YMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK 316
Y++RE ISS++QT+IFVSTKHHVEFLN+LFREEGLEPS+ YG MDQ+AR IH+S+FRARK
Sbjct: 283 YLVRERISSEEQTIIFVSTKHHVEFLNILFREEGLEPSLSYGAMDQEARNIHISKFRARK 342
Query: 317 TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMA 376
TM LIVTDVAARG+DIPLLDNV+NWDFP KPK+FVHRVGR AR GR+GTA++FVTSEDMA
Sbjct: 343 TMILIVTDVAARGLDIPLLDNVVNWDFPAKPKLFVHRVGRVARQGRSGTAYTFVTSEDMA 402
Query: 377 YLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVR 436
YLLDLHLFLSKP+R AP+EEE+L DM+G+ KID+A+ANGET+YGRFPQT+IDLVSD +R
Sbjct: 403 YLLDLHLFLSKPLRPAPTEEELLKDMEGMNLKIDRALANGETVYGRFPQTIIDLVSDGIR 462
Query: 437 EIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVLEGGELM 496
E+I+ DL +L++ CTNAF LY KT+P+PS ESIRR KDLPREGLHP+F++VL EL
Sbjct: 463 EVINGCTDLIALEKPCTNAFHLYLKTRPMPSTESIRRVKDLPREGLHPIFRDVLGSDELS 522
Query: 497 ALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRS 556
ALAFSERLK+FRPKQTILEAEGEAAR S+QW+DVMKKKR VHE IINLVHQ+ +
Sbjct: 523 ALAFSERLKSFRPKQTILEAEGEAARG------SNQWLDVMKKKREVHEGIINLVHQKNN 576
Query: 557 SKSMEKEVEPEADSLMAKEIKETHGSKRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQG 616
KE E ++ E K+ G+KRK ++F+DEEY+ISSVP N H+EAGLSVR+++G
Sbjct: 577 VDHEPKEELVE--NISNWERKDVCGNKRKLQSFRDEEYYISSVPQNQHLEAGLSVRANEG 634
Query: 617 FGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAK 676
F NRL+AAVLDLV D++ G+Q QK YHW K K++KLN+G+RV+A+GK +KTESGAK
Sbjct: 635 FVENRLDAAVLDLVDDETSGMQAQKTRYHWKK--NKFVKLNSGDRVTATGK-IKTESGAK 691
Query: 677 VKATKTGIYKKWKERSHKKVYLKGASNEGNAEETTSVPGGRHLGGNNRKFRGGKNQQRSV 736
+K TKTGIYKKW++++H+ + G G AEE S G G NRK +R +
Sbjct: 692 LKPTKTGIYKKWQQKTHRSID-TGRKYGGFAEEGASTTGSHQRG--NRKHTAAGRGRRYI 748
Query: 737 PNAHVCSEIKDLDQVRKERQKKADRIAFMKGKTQKG---KKFSKNGKR 781
PNA V SEI++ +Q++K RQ+KA IA MK ++ K +KF KN +R
Sbjct: 749 PNADVPSEIRNPEQIQKSRQQKAMDIARMKNRSTKESKFQKFQKNNRR 796
>gi|218201153|gb|EEC83580.1| hypothetical protein OsI_29242 [Oryza sativa Indica Group]
Length = 883
Score = 1051 bits (2717), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 519/803 (64%), Positives = 641/803 (79%), Gaps = 46/803 (5%)
Query: 17 KKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAA 76
KKK+KSGGFES+ L V+R ++ KGY+VPTPIQRK MPLIL+G D+ AMARTGSGKTAA
Sbjct: 43 KKKAKSGGFESMGLCEEVYRGVRHKGYRVPTPIQRKAMPLILAGHDIAAMARTGSGKTAA 102
Query: 77 FLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQ 136
FLVPM+QRL +H G+RALILSPTRDLA QTLKF ++LG++TDL+ISL+VGGDSMESQ
Sbjct: 103 FLVPMIQRLRRHDAGAGIRALILSPTRDLATQTLKFAQQLGKFTDLKISLIVGGDSMESQ 162
Query: 137 FEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL 196
FEELA+NPDIIIATPGRL+HHL+EVED++L++VEYVVFDEAD LF +G +QLH IL +L
Sbjct: 163 FEELAENPDIIIATPGRLVHHLAEVEDLNLRTVEYVVFDEADSLFSLGLIQQLHDILHKL 222
Query: 197 SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALL 256
S+ RQTLLFSATLP ALA+FAKAGLRDP +VRLD+D KISPDLKLAFFTLRQEEK AALL
Sbjct: 223 SDTRQTLLFSATLPQALADFAKAGLRDPQIVRLDLDKKISPDLKLAFFTLRQEEKLAALL 282
Query: 257 YMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK 316
Y++RE ISS++QT+IFVSTKHHVEFLN+LFREEGLEPS+ YG MDQ+AR IH+S+FRARK
Sbjct: 283 YLVRERISSEEQTIIFVSTKHHVEFLNILFREEGLEPSLSYGAMDQEARNIHISKFRARK 342
Query: 317 TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMA 376
TM LIVTDVAARG+DIPLLDNV+NWDFP KPK+FVHRVGR AR GR+GTA++FVTSEDMA
Sbjct: 343 TMILIVTDVAARGLDIPLLDNVVNWDFPAKPKLFVHRVGRVARQGRSGTAYTFVTSEDMA 402
Query: 377 YLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVR 436
YLLDLHLFLSKP+R AP+EEE+L DM+G+ KID+A+ANGET+YGRFPQT+IDLVSD +R
Sbjct: 403 YLLDLHLFLSKPLRPAPTEEELLKDMEGMNLKIDRALANGETVYGRFPQTIIDLVSDGIR 462
Query: 437 EIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVLEGGELM 496
E+I+ DL +L++ CTNAF LY KT+P+PS ESIRR KDLPREGLHP+F++VL EL
Sbjct: 463 EVINGCTDLIALEKPCTNAFHLYLKTRPMPSTESIRRVKDLPREGLHPIFRDVLGSDELS 522
Query: 497 ALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRS 556
ALAFSERLK+FRPKQTILEAEGEAAR+++ +G S+QW+DVMKKKR VHE IINLVHQ ++
Sbjct: 523 ALAFSERLKSFRPKQTILEAEGEAARARNSKG-SNQWLDVMKKKREVHEGIINLVHQ-KN 580
Query: 557 SKSMEKEVEPEADSLMAK-----------------------------------EIKETHG 581
+ E ++EP+A ++ E K+ G
Sbjct: 581 NVDHEPKLEPKAQHALSHIILKILIAGSSVGGLEEGLSLCETEEELVENISNWERKDVCG 640
Query: 582 SKRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQK 641
+KRK ++F+DEEY+ISSVP N H+EAGLSVR+++GF NRL+AAVLDLV D++ G+Q QK
Sbjct: 641 NKRKLQSFRDEEYYISSVPQNQHLEAGLSVRANEGFVENRLDAAVLDLVDDETSGMQAQK 700
Query: 642 QVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKATKTGIYKKWKERSHKKVYLKGA 701
YHW K K++KLN+G+RV+A+GK +KTESGAK+K TKTGIYKKW++++H+ + G
Sbjct: 701 TRYHWKK--NKFVKLNSGDRVTATGK-IKTESGAKLKPTKTGIYKKWQQKTHRSID-TGR 756
Query: 702 SNEGNAEETTSVPGGRHLGGNNRKFRGGKNQQRSVPNAHVCSEIKDLDQVRKERQKKADR 761
G AEE S G G NRK +R +PNA V SEI++ +Q++K RQ+KA
Sbjct: 757 KYGGFAEEGASTTGSHQRG--NRKHTAAGRGRRYIPNADVPSEIRNPEQIQKSRQQKAMD 814
Query: 762 IAFMKGKTQKG---KKFSKNGKR 781
IA MK ++ K +KF KN +R
Sbjct: 815 IARMKNRSTKESKFQKFQKNNRR 837
>gi|115476424|ref|NP_001061808.1| Os08g0416100 [Oryza sativa Japonica Group]
gi|158513705|sp|A3BT52.2|RH29_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 29; Short=RNAH
gi|113623777|dbj|BAF23722.1| Os08g0416100 [Oryza sativa Japonica Group]
gi|222640554|gb|EEE68686.1| hypothetical protein OsJ_27320 [Oryza sativa Japonica Group]
Length = 851
Score = 1050 bits (2715), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 515/768 (67%), Positives = 631/768 (82%), Gaps = 17/768 (2%)
Query: 17 KKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAA 76
K+K+KSGGFES+ L V+R ++ KGY+VPTPIQRK MPLIL+G D+ AMARTGSGKTAA
Sbjct: 43 KRKAKSGGFESMGLCEEVYRGVRHKGYRVPTPIQRKAMPLILAGHDIAAMARTGSGKTAA 102
Query: 77 FLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQ 136
FLVPM+QRL +H G+RALILSPTRDLA QTLKF ++LG++TDL+ISL+VGGDSMESQ
Sbjct: 103 FLVPMIQRLRRHDAGAGIRALILSPTRDLATQTLKFAQQLGKFTDLKISLIVGGDSMESQ 162
Query: 137 FEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL 196
FEELA+NPDIIIATPGRL+HHL+EVED++L++VEYVVFDEAD LF +G +QLH IL +L
Sbjct: 163 FEELAENPDIIIATPGRLVHHLAEVEDLNLRTVEYVVFDEADSLFSLGLIQQLHDILHKL 222
Query: 197 SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALL 256
S+ RQTLLFSATLP ALA+FAKAGLRDP +VRLD+D KISPDLKLAFFTLRQEEK AALL
Sbjct: 223 SDTRQTLLFSATLPQALADFAKAGLRDPQIVRLDLDKKISPDLKLAFFTLRQEEKLAALL 282
Query: 257 YMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK 316
Y++RE ISS++QT+IFVSTKHHVEFLN+LFREEGLEPS+ YG MDQ+AR IH+S+FRARK
Sbjct: 283 YLVRERISSEEQTIIFVSTKHHVEFLNILFREEGLEPSLSYGAMDQEARNIHISKFRARK 342
Query: 317 TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMA 376
TM LIVTDVAARG+DIPLLDNV+NWDFP KPK+FVHRVGR AR GR+GTA++FVTSEDMA
Sbjct: 343 TMILIVTDVAARGLDIPLLDNVVNWDFPAKPKLFVHRVGRVARQGRSGTAYTFVTSEDMA 402
Query: 377 YLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVR 436
YLLDLHLFLSKP+R AP+EEE+L DM+G+ KID+A+ANGET+YGRFPQT+IDLVSD ++
Sbjct: 403 YLLDLHLFLSKPLRPAPTEEELLKDMEGMNLKIDRALANGETVYGRFPQTIIDLVSDGIK 462
Query: 437 EIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVLEGGELM 496
E+I+ DL +L++ CTNAF LY KT+P+PS ESIRR KDLPREGLHP+F++VL EL
Sbjct: 463 EVINGCTDLIALEKPCTNAFHLYLKTRPMPSTESIRRVKDLPREGLHPIFRDVLGSDELS 522
Query: 497 ALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRS 556
ALAFSERLK+FRPKQTILEAEGEAAR S+QW+DVMKKKR VHE IINLVHQ+ +
Sbjct: 523 ALAFSERLKSFRPKQTILEAEGEAARG------SNQWLDVMKKKREVHEGIINLVHQKNN 576
Query: 557 SKSMEKEVEPEADSLMAKEIKETHGSKRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQG 616
KE E ++ E K+ G+KRK ++F+DEEY+ISSVP N H+EAGLSVR+++G
Sbjct: 577 VDHEPKEELVE--NISNWERKDVCGNKRKLQSFRDEEYYISSVPQNQHLEAGLSVRANEG 634
Query: 617 FGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAK 676
F NRL+AAVLDLV D++ G+Q QK YHW K K++KLN+G+RV+A+GK +KTESGAK
Sbjct: 635 FVENRLDAAVLDLVDDETSGMQAQKTRYHWKK--NKFVKLNSGDRVTATGK-IKTESGAK 691
Query: 677 VKATKTGIYKKWKERSHKKVYLKGASNEGNAEETTSVPGGRHLGGNNRKFRGGKNQQRSV 736
+K TKTGIYKKW++++H+ + G G AEE S G G NRK +R +
Sbjct: 692 LKPTKTGIYKKWQQKTHRSID-TGRKFGGFAEEGASTTGSHQRG--NRKHTAVGRGRRYI 748
Query: 737 PNAHVCSEIKDLDQVRKERQKKADRIAFMKGKTQKG---KKFSKNGKR 781
PNA V SEI++ +Q++K RQ+KA IA MK ++ K +KF KN +R
Sbjct: 749 PNADVPSEIRNPEQIQKSRQQKAMDIARMKNRSTKESKFQKFQKNNRR 796
>gi|51449873|gb|AAU01909.1| putative ATP-dependent RNA helicase [Oryza sativa Indica Group]
Length = 828
Score = 1049 bits (2712), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 514/768 (66%), Positives = 631/768 (82%), Gaps = 17/768 (2%)
Query: 17 KKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAA 76
K+K+KSGGFES+ L V+R ++ KGY+VPTPIQRK MPLIL+G D+ AMARTGSGKTAA
Sbjct: 20 KRKAKSGGFESMGLCEEVYRGVRHKGYRVPTPIQRKAMPLILAGHDIAAMARTGSGKTAA 79
Query: 77 FLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQ 136
FLVPM+QRL +H G+RALILSPTRDLA QTLKF ++LG++TDL+ISL+VGGDSMESQ
Sbjct: 80 FLVPMIQRLRRHDAGAGIRALILSPTRDLATQTLKFAQQLGKFTDLKISLIVGGDSMESQ 139
Query: 137 FEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL 196
FEELA+NPDIIIATPGRL+HHL+EVED++L++VEYVVFDEAD LF +G +QLH IL +L
Sbjct: 140 FEELAENPDIIIATPGRLVHHLAEVEDLNLRTVEYVVFDEADSLFSLGLIQQLHDILHKL 199
Query: 197 SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALL 256
S+ RQTLLFSATLP ALA+FAKAGLRDP +VRLD+D KISPDLKLAFFTLRQEEK AALL
Sbjct: 200 SDTRQTLLFSATLPQALADFAKAGLRDPQIVRLDLDKKISPDLKLAFFTLRQEEKLAALL 259
Query: 257 YMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK 316
Y++RE ISS++QT+IFVSTKHHVEFLN+LFREEGLEPS+ YG MDQ+AR IH+S+FRAR+
Sbjct: 260 YLVRERISSEEQTIIFVSTKHHVEFLNILFREEGLEPSLSYGAMDQEARNIHISKFRARE 319
Query: 317 TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMA 376
TM LIVTDVAARG+DIPLLDNV+NWDFP KPK+FVHRVGR AR GR+GTA++FVTSEDMA
Sbjct: 320 TMILIVTDVAARGLDIPLLDNVVNWDFPAKPKLFVHRVGRVARQGRSGTAYTFVTSEDMA 379
Query: 377 YLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVR 436
YLLDLHLFLSKP+R AP+EEE+L DM+G+ KID+A+ANGET+YGRFPQT+IDLVSD ++
Sbjct: 380 YLLDLHLFLSKPLRPAPTEEELLKDMEGMNLKIDRALANGETVYGRFPQTIIDLVSDGIK 439
Query: 437 EIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVLEGGELM 496
E+I+ DL +L++ CTNAF LY KT+P+PS ESIRR KDLPREGLHP+F++VL EL
Sbjct: 440 EVINGCTDLIALEKPCTNAFHLYLKTRPMPSTESIRRVKDLPREGLHPIFRDVLGSDELS 499
Query: 497 ALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRS 556
ALAFSERLK+FRPKQTILEAEGEAAR S+QW+DVMKKKR VHE IINLVHQ+ +
Sbjct: 500 ALAFSERLKSFRPKQTILEAEGEAARG------SNQWLDVMKKKREVHEGIINLVHQKNN 553
Query: 557 SKSMEKEVEPEADSLMAKEIKETHGSKRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQG 616
KE E ++ E K+ G+KRK ++F+DEEY+ISSVP N H+EAGLSVR+++G
Sbjct: 554 VDHEPKEELVE--NISNWERKDVCGNKRKLQSFRDEEYYISSVPQNQHLEAGLSVRANEG 611
Query: 617 FGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAK 676
F NRL+AAVLDLV D++ G+Q QK YHW K K++KLN+G+RV+A+GK +KTESGAK
Sbjct: 612 FVENRLDAAVLDLVDDETSGMQAQKTRYHWKK--NKFVKLNSGDRVTATGK-IKTESGAK 668
Query: 677 VKATKTGIYKKWKERSHKKVYLKGASNEGNAEETTSVPGGRHLGGNNRKFRGGKNQQRSV 736
+K TKTGIYKKW++++H+ + G G AEE S G G NRK +R +
Sbjct: 669 LKPTKTGIYKKWQQKTHRSID-TGRKYGGFAEEGASTTGSHQRG--NRKHTAAGRGRRYI 725
Query: 737 PNAHVCSEIKDLDQVRKERQKKADRIAFMKGKTQKG---KKFSKNGKR 781
PNA V SEI++ +Q++K RQ+KA IA MK ++ K +KF KN +R
Sbjct: 726 PNADVPSEIRNPEQIQKSRQQKAMDIARMKNRSTKESKFQKFQKNNRR 773
>gi|37573051|dbj|BAC98579.1| putative ATP-dependent RNA-helicase [Oryza sativa Japonica Group]
Length = 828
Score = 1048 bits (2711), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 515/768 (67%), Positives = 631/768 (82%), Gaps = 17/768 (2%)
Query: 17 KKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAA 76
K+K+KSGGFES+ L V+R ++ KGY+VPTPIQRK MPLIL+G D+ AMARTGSGKTAA
Sbjct: 20 KRKAKSGGFESMGLCEEVYRGVRHKGYRVPTPIQRKAMPLILAGHDIAAMARTGSGKTAA 79
Query: 77 FLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQ 136
FLVPM+QRL +H G+RALILSPTRDLA QTLKF ++LG++TDL+ISL+VGGDSMESQ
Sbjct: 80 FLVPMIQRLRRHDAGAGIRALILSPTRDLATQTLKFAQQLGKFTDLKISLIVGGDSMESQ 139
Query: 137 FEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL 196
FEELA+NPDIIIATPGRL+HHL+EVED++L++VEYVVFDEAD LF +G +QLH IL +L
Sbjct: 140 FEELAENPDIIIATPGRLVHHLAEVEDLNLRTVEYVVFDEADSLFSLGLIQQLHDILHKL 199
Query: 197 SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALL 256
S+ RQTLLFSATLP ALA+FAKAGLRDP +VRLD+D KISPDLKLAFFTLRQEEK AALL
Sbjct: 200 SDTRQTLLFSATLPQALADFAKAGLRDPQIVRLDLDKKISPDLKLAFFTLRQEEKLAALL 259
Query: 257 YMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK 316
Y++RE ISS++QT+IFVSTKHHVEFLN+LFREEGLEPS+ YG MDQ+AR IH+S+FRARK
Sbjct: 260 YLVRERISSEEQTIIFVSTKHHVEFLNILFREEGLEPSLSYGAMDQEARNIHISKFRARK 319
Query: 317 TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMA 376
TM LIVTDVAARG+DIPLLDNV+NWDFP KPK+FVHRVGR AR GR+GTA++FVTSEDMA
Sbjct: 320 TMILIVTDVAARGLDIPLLDNVVNWDFPAKPKLFVHRVGRVARQGRSGTAYTFVTSEDMA 379
Query: 377 YLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVR 436
YLLDLHLFLSKP+R AP+EEE+L DM+G+ KID+A+ANGET+YGRFPQT+IDLVSD ++
Sbjct: 380 YLLDLHLFLSKPLRPAPTEEELLKDMEGMNLKIDRALANGETVYGRFPQTIIDLVSDGIK 439
Query: 437 EIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVLEGGELM 496
E+I+ DL +L++ CTNAF LY KT+P+PS ESIRR KDLPREGLHP+F++VL EL
Sbjct: 440 EVINGCTDLIALEKPCTNAFHLYLKTRPMPSTESIRRVKDLPREGLHPIFRDVLGSDELS 499
Query: 497 ALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRS 556
ALAFSERLK+FRPKQTILEAEGEAAR S+QW+DVMKKKR VHE IINLVHQ+ +
Sbjct: 500 ALAFSERLKSFRPKQTILEAEGEAARG------SNQWLDVMKKKREVHEGIINLVHQKNN 553
Query: 557 SKSMEKEVEPEADSLMAKEIKETHGSKRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQG 616
KE E ++ E K+ G+KRK ++F+DEEY+ISSVP N H+EAGLSVR+++G
Sbjct: 554 VDHEPKEELVE--NISNWERKDVCGNKRKLQSFRDEEYYISSVPQNQHLEAGLSVRANEG 611
Query: 617 FGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAK 676
F NRL+AAVLDLV D++ G+Q QK YHW K K++KLN+G+RV+A+GK +KTESGAK
Sbjct: 612 FVENRLDAAVLDLVDDETSGMQAQKTRYHWKK--NKFVKLNSGDRVTATGK-IKTESGAK 668
Query: 677 VKATKTGIYKKWKERSHKKVYLKGASNEGNAEETTSVPGGRHLGGNNRKFRGGKNQQRSV 736
+K TKTGIYKKW++++H+ + G G AEE S G G NRK +R +
Sbjct: 669 LKPTKTGIYKKWQQKTHRSID-TGRKFGGFAEEGASTTGSHQRG--NRKHTAVGRGRRYI 725
Query: 737 PNAHVCSEIKDLDQVRKERQKKADRIAFMKGKTQKG---KKFSKNGKR 781
PNA V SEI++ +Q++K RQ+KA IA MK ++ K +KF KN +R
Sbjct: 726 PNADVPSEIRNPEQIQKSRQQKAMDIARMKNRSTKESKFQKFQKNNRR 773
>gi|326514620|dbj|BAJ96297.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 873
Score = 1022 bits (2643), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/755 (67%), Positives = 615/755 (81%), Gaps = 11/755 (1%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
KSGGFES+ L V+R ++ KGY+VPTPIQRK MPLIL+G DV AMARTGSGKTAAFLVP
Sbjct: 64 KSGGFESMGLCEEVYRGVRHKGYRVPTPIQRKAMPLILAGLDVAAMARTGSGKTAAFLVP 123
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
MLQRL P G+RALILSPTRDLA QTLKFT +LG++TDL+ L+VGG SMESQFE L
Sbjct: 124 MLQRLRHRDPGAGIRALILSPTRDLATQTLKFTHQLGKFTDLKTGLIVGGGSMESQFEVL 183
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
A NPDI+IATPGR +H LS V+D+SL+SVEYVVFDEAD LF +GFAEQLHKIL +LS+ R
Sbjct: 184 ADNPDIVIATPGRFVHILSMVDDLSLRSVEYVVFDEADSLFSLGFAEQLHKILHKLSDTR 243
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSAT+P ALAEFAKAGLRDP ++RLD+D KISPDLKLAFFTLRQEEK AALLY++R
Sbjct: 244 QTLLFSATMPKALAEFAKAGLRDPQVIRLDLDKKISPDLKLAFFTLRQEEKLAALLYLVR 303
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
EHISS++QT+IFVSTK+HVEFLN+LFREEGLE S+ YG MDQ+AR IH+SRFRARKTM L
Sbjct: 304 EHISSEEQTMIFVSTKYHVEFLNILFREEGLEASLSYGAMDQEARTIHISRFRARKTMLL 363
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLD 380
IVTDVAARG+DIPLLDNV+NWDFP KPK+FVHRVGR AR GRTGTAF+FVTSEDM +LLD
Sbjct: 364 IVTDVAARGLDIPLLDNVVNWDFPAKPKLFVHRVGRVARQGRTGTAFTFVTSEDMPFLLD 423
Query: 381 LHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIID 440
LHLFLSKP+R AP+E+E+L DMDG+ KIDQ++A+GETIYGRFPQT++DL SD V+E+I
Sbjct: 424 LHLFLSKPLRPAPTEDELLKDMDGMNLKIDQSLADGETIYGRFPQTILDLCSDGVKEVIS 483
Query: 441 SSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVLEGGELMALAF 500
DL +L++ C NAFRLY KT+ +PSKES+RR KDLPREGLHP+F++VL E+ A+AF
Sbjct: 484 GCTDLIALEKPCANAFRLYLKTRAMPSKESVRRAKDLPREGLHPIFRDVLRPDEISAIAF 543
Query: 501 SERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKSM 560
S+RLK+FRPKQTILEAEGEAARS+ +G SSQW+DVMKKKR VHE IINLVHQ+ S
Sbjct: 544 SDRLKSFRPKQTILEAEGEAARSRSSKG-SSQWLDVMKKKREVHEGIINLVHQKNSGDLA 602
Query: 561 EKEVEPEADSLMAKEIKETHGSKRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLN 620
KE E E ++ E KE G KRK+++F+DE+++ISSVP N H EAGLSV+ ++GF +
Sbjct: 603 TKEEETE--NISNWEKKEVCGKKRKSQSFRDEDHYISSVPQNQHSEAGLSVKGNEGFVQD 660
Query: 621 RLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT 680
RL+AAVLDLV D++ G+Q QK YHW K K++KLNNG+RV+++GK +KTES AK+KA+
Sbjct: 661 RLDAAVLDLVDDETSGMQAQKTRYHWMK--NKFVKLNNGDRVTSTGK-IKTESSAKLKAS 717
Query: 681 KTGIYKKWKERSHKKVYLKGASNEGNAEETTSVPGGRHLGGNNRKFRGGKNQQRSVPNAH 740
K IYKKW+++SH+ + G N+G AE TS P G GGN R G+ + S+PNA
Sbjct: 718 KD-IYKKWQQKSHRAISSGG--NDG-AEGGTSTPAGYQRGGNRRYPAAGRGRS-SIPNAD 772
Query: 741 VCSEIKDLDQVRKERQKKADRIAFMKGKTQKGKKF 775
V SEI++ Q+RK RQ+KA + K+ K KF
Sbjct: 773 VPSEIRNPQQMRKGRQEKAMQDLRWNDKSAKDGKF 807
>gi|326504194|dbj|BAJ90929.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 873
Score = 1022 bits (2643), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/755 (67%), Positives = 615/755 (81%), Gaps = 11/755 (1%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
KSGGFES+ L V+R ++ KGY+VPTPIQRK MPLIL+G DV AMARTGSGKTAAFLVP
Sbjct: 64 KSGGFESMGLCEEVYRGVRHKGYRVPTPIQRKAMPLILAGLDVAAMARTGSGKTAAFLVP 123
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
MLQRL P G+RALILSPTRDLA QTLKFT +LG++TDL+ L+VGG SMESQFE L
Sbjct: 124 MLQRLRHRDPGAGIRALILSPTRDLATQTLKFTHQLGKFTDLKTGLIVGGGSMESQFEVL 183
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
A NPDI+IATPGR +H LS V+D+SL+SVEYVVFDEAD LF +GFAEQLHKIL +LS+ R
Sbjct: 184 ADNPDIVIATPGRFVHILSMVDDLSLRSVEYVVFDEADSLFSLGFAEQLHKILHKLSDTR 243
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSAT+P ALAEFAKAGLRDP ++RLD+D KISPDLKLAFFTLRQEEK AALLY++R
Sbjct: 244 QTLLFSATMPKALAEFAKAGLRDPQVIRLDLDKKISPDLKLAFFTLRQEEKLAALLYLVR 303
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
EHISS++QT+IFVSTK+HVEFLN+LFREEGLE S+ YG MDQ+AR IH+SRFRARKTM L
Sbjct: 304 EHISSEEQTMIFVSTKYHVEFLNILFREEGLEASLSYGAMDQEARTIHISRFRARKTMLL 363
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLD 380
IVTDVAARG+DIPLLDNV+NWDFP KPK+FVHRVGR AR GRTGTAF+FVTSEDM +LLD
Sbjct: 364 IVTDVAARGLDIPLLDNVVNWDFPAKPKLFVHRVGRVARQGRTGTAFTFVTSEDMPFLLD 423
Query: 381 LHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIID 440
LHLFLSKP+R AP+E+E+L DMDG+ KIDQ++A+GETIYGRFPQT++DL SD V+E+I
Sbjct: 424 LHLFLSKPLRPAPTEDELLKDMDGMNLKIDQSLADGETIYGRFPQTILDLCSDGVKEVIS 483
Query: 441 SSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVLEGGELMALAF 500
DL +L++ C NAFRLY KT+ +PSKES+RR KDLPREGLHP+F++VL E+ A+AF
Sbjct: 484 GCTDLIALEKPCANAFRLYLKTRAMPSKESVRRAKDLPREGLHPIFRDVLRPDEISAIAF 543
Query: 501 SERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKSM 560
S+RLK+FRPKQTILEAEGEAARS+ +G SSQW+DVMKKKR VHE IINLVHQ+ S
Sbjct: 544 SDRLKSFRPKQTILEAEGEAARSRSSKG-SSQWLDVMKKKREVHEGIINLVHQKNSGDLA 602
Query: 561 EKEVEPEADSLMAKEIKETHGSKRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLN 620
KE E E ++ E KE G KRK+++F+DE+++ISSVP N H EAGLSV+ ++GF +
Sbjct: 603 TKEEETE--NISNWEKKEVCGKKRKSQSFRDEDHYISSVPQNQHSEAGLSVKGNEGFVQD 660
Query: 621 RLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT 680
RL+AAVLDLV D++ G+Q QK YHW K K++KLNNG+RV+++GK +KTES AK+KA+
Sbjct: 661 RLDAAVLDLVDDETSGMQAQKTRYHWMK--NKFVKLNNGDRVTSTGK-IKTESSAKLKAS 717
Query: 681 KTGIYKKWKERSHKKVYLKGASNEGNAEETTSVPGGRHLGGNNRKFRGGKNQQRSVPNAH 740
K IYKKW+++SH+ + G N+G AE TS P G GGN R G+ + S+PNA
Sbjct: 718 KD-IYKKWQQKSHRAISSGG--NDG-AEGGTSTPAGYQRGGNRRYPAAGRGRS-SIPNAD 772
Query: 741 VCSEIKDLDQVRKERQKKADRIAFMKGKTQKGKKF 775
V SEI++ Q+RK RQ+KA + K+ K KF
Sbjct: 773 VPSEIRNPQQMRKGRQEKAMQDLRWNDKSAKDGKF 807
>gi|326526589|dbj|BAJ97311.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 880
Score = 1022 bits (2642), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/755 (67%), Positives = 615/755 (81%), Gaps = 11/755 (1%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
KSGGFES+ L V+R ++ KGY+VPTPIQRK MPLIL+G DV AMARTGSGKTAAFLVP
Sbjct: 71 KSGGFESMGLCEEVYRGVRHKGYRVPTPIQRKAMPLILAGLDVAAMARTGSGKTAAFLVP 130
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
MLQRL P G+RALILSPTRDLA QTLKFT +LG++TDL+ L+VGG SMESQFE L
Sbjct: 131 MLQRLRHRDPGAGIRALILSPTRDLATQTLKFTHQLGKFTDLKTGLIVGGGSMESQFEVL 190
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
A NPDI+IATPGR +H LS V+D+SL+SVEYVVFDEAD LF +GFAEQLHKIL +LS+ R
Sbjct: 191 ADNPDIVIATPGRFVHILSMVDDLSLRSVEYVVFDEADSLFSLGFAEQLHKILHKLSDTR 250
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSAT+P ALAEFAKAGLRDP ++RLD+D KISPDLKLAFFTLRQEEK AALLY++R
Sbjct: 251 QTLLFSATMPKALAEFAKAGLRDPQVIRLDLDKKISPDLKLAFFTLRQEEKLAALLYLVR 310
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
EHISS++QT+IFVSTK+HVEFLN+LFREEGLE S+ YG MDQ+AR IH+SRFRARKTM L
Sbjct: 311 EHISSEEQTMIFVSTKYHVEFLNILFREEGLEASLSYGAMDQEARTIHISRFRARKTMLL 370
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLD 380
IVTDVAARG+DIPLLDNV+NWDFP KPK+FVHRVGR AR GRTGTAF+FVTSEDM +LLD
Sbjct: 371 IVTDVAARGLDIPLLDNVVNWDFPAKPKLFVHRVGRVARQGRTGTAFTFVTSEDMPFLLD 430
Query: 381 LHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIID 440
LHLFLSKP+R AP+E+E+L DMDG+ KIDQ++A+GETIYGRFPQT++DL SD V+E+I
Sbjct: 431 LHLFLSKPLRPAPTEDELLKDMDGMNLKIDQSLADGETIYGRFPQTILDLCSDGVKEVIS 490
Query: 441 SSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVLEGGELMALAF 500
DL +L++ C NAFRLY KT+ +PSKES+RR KDLPREGLHP+F++VL E+ A+AF
Sbjct: 491 GCTDLIALEKPCANAFRLYLKTRAMPSKESVRRAKDLPREGLHPIFRDVLRPDEISAIAF 550
Query: 501 SERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKSM 560
S+RLK+FRPKQTILEAEGEAARS+ +G SSQW+DVMKKKR VHE IINLVHQ+ S
Sbjct: 551 SDRLKSFRPKQTILEAEGEAARSRSSKG-SSQWLDVMKKKREVHEGIINLVHQKNSGDLA 609
Query: 561 EKEVEPEADSLMAKEIKETHGSKRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLN 620
KE E E ++ E KE G KRK+++F+DE+++ISSVP N H EAGLSV+ ++GF +
Sbjct: 610 TKEEETE--NISNWEKKEVCGKKRKSQSFRDEDHYISSVPQNQHSEAGLSVKGNEGFVQD 667
Query: 621 RLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT 680
RL+AAVLDLV D++ G+Q QK YHW K K++KLNNG+RV+++GK +KTES AK+KA+
Sbjct: 668 RLDAAVLDLVDDETSGMQAQKTRYHWMK--NKFVKLNNGDRVTSTGK-IKTESSAKLKAS 724
Query: 681 KTGIYKKWKERSHKKVYLKGASNEGNAEETTSVPGGRHLGGNNRKFRGGKNQQRSVPNAH 740
K IYKKW+++SH+ + G N+G AE TS P G GGN R G+ + S+PNA
Sbjct: 725 KD-IYKKWQQKSHRAISSGG--NDG-AEGGTSTPAGYQRGGNRRYPAAGRGRS-SIPNAD 779
Query: 741 VCSEIKDLDQVRKERQKKADRIAFMKGKTQKGKKF 775
V SEI++ Q+RK RQ+KA + K+ K KF
Sbjct: 780 VPSEIRNPQQMRKGRQEKAMQDLRWNDKSAKDGKF 814
>gi|357147783|ref|XP_003574483.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 29-like
[Brachypodium distachyon]
Length = 851
Score = 1004 bits (2595), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 494/754 (65%), Positives = 604/754 (80%), Gaps = 9/754 (1%)
Query: 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPM 81
SGGFES+ L V+R ++ KGY+VPTPIQRK MPLIL+G DV AMARTGSGKTAAFLVPM
Sbjct: 54 SGGFESMGLCEEVYRGVRHKGYRVPTPIQRKAMPLILAGLDVAAMARTGSGKTAAFLVPM 113
Query: 82 LQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
LQRL + P G+RALILSPTRDLA+QTLKF +LG++T L+ +VGG S++SQFE LA
Sbjct: 114 LQRLRRRDPGAGIRALILSPTRDLAMQTLKFAHQLGKFTGLKTEAIVGGGSIDSQFEILA 173
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
NPDIIIATPGRL+H L+ V D+SL+SVEYVVFDEAD LF +GFAEQLH IL +LS+ RQ
Sbjct: 174 DNPDIIIATPGRLVHILTMVNDLSLRSVEYVVFDEADSLFSLGFAEQLHTILQKLSDTRQ 233
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
TLLFSAT+P ALAEFAKAGLRDP ++RLDVD KISPDLKL F TLRQEEK AALLY++RE
Sbjct: 234 TLLFSATMPKALAEFAKAGLRDPQVLRLDVDKKISPDLKLVFLTLRQEEKLAALLYLVRE 293
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
ISS++QT+IFVSTK+HVEFLN+LFREEGLEPS+ YG MDQ+AR IH+S+FRA+KTM LI
Sbjct: 294 RISSEEQTMIFVSTKYHVEFLNILFREEGLEPSLSYGAMDQEARNIHISKFRAKKTMLLI 353
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
VTDVAARG+DIPLLDNV+NWDFP KPK+FVHRVGR AR GRTGTA+SFVTSEDM +LLDL
Sbjct: 354 VTDVAARGLDIPLLDNVVNWDFPAKPKLFVHRVGRVARQGRTGTAYSFVTSEDMPFLLDL 413
Query: 382 HLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDS 441
HLFLSKP+R AP+EEE+L DMDG+ KIDQ++ANGET+YGRFPQT+IDL SD V+E+I+
Sbjct: 414 HLFLSKPLRPAPTEEELLKDMDGMNLKIDQSLANGETVYGRFPQTIIDLCSDGVKEVING 473
Query: 442 SADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVLEGGELMALAFS 501
DL +L++ C NAFRLY KT+ +PSKESIRR KD PREGLHP+F++VL E+ ALAFS
Sbjct: 474 CTDLIALEKPCANAFRLYLKTRAMPSKESIRRAKDFPREGLHPIFRDVLRSDEISALAFS 533
Query: 502 ERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKSME 561
ERLK+FRPKQTILEAEGEAA+S+ +G S+QW+DVMKKKR VHE IINLVH++ S
Sbjct: 534 ERLKSFRPKQTILEAEGEAAKSRSSKG-SNQWLDVMKKKREVHEGIINLVHEKNSGDLAT 592
Query: 562 KEVEPEADSLMAKEIKETHGSKRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNR 621
K E EA+++ E KE G KRK+++F+DE+Y+ISSVP N H EAGLSV+ ++GF +R
Sbjct: 593 K--EEEAENISNWETKEVCGKKRKSQSFRDEDYYISSVPQNQHSEAGLSVKGNEGFVQDR 650
Query: 622 LEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKATK 681
L+AAVLDLV D++ G+Q QK YHW K K++KLN+G+RV+ASGK +KTE AK KA
Sbjct: 651 LDAAVLDLVDDETSGMQSQKTRYHWMK--NKFVKLNSGDRVTASGK-IKTERTAKSKAAS 707
Query: 682 TGIYKKWKERSHKKVYLKGASNEGNAEETTSVPGGRHLGGNNRKFRGGKNQQRSVPNAHV 741
IYKKW+++SH+ + G + E S PGG G NR+ + S+PNA V
Sbjct: 708 QDIYKKWQQKSHRAIN-SGGKDGDFREGAPSTPGGYQRG--NRRHPAAGRGRWSIPNADV 764
Query: 742 CSEIKDLDQVRKERQKKADRIAFMKGKTQKGKKF 775
SEI++ Q++K RQ+KA + MK K+ K KF
Sbjct: 765 PSEIRNPQQMQKGRQQKAMQNMRMKEKSAKDGKF 798
>gi|224085049|ref|XP_002307470.1| predicted protein [Populus trichocarpa]
gi|222856919|gb|EEE94466.1| predicted protein [Populus trichocarpa]
Length = 510
Score = 920 bits (2379), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 447/506 (88%), Positives = 482/506 (95%)
Query: 3 LVSSKAELKRREKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGAD 62
LVSS AELKR+++ KKKSKS GFESLNLSPNVFR IKRKGY+VPTPIQRKTMPLIL+G D
Sbjct: 5 LVSSMAELKRKQQVKKKSKSCGFESLNLSPNVFRGIKRKGYRVPTPIQRKTMPLILAGID 64
Query: 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDL 122
VVAMARTGSGKTAAFL+PML++L QH+PQ GVRALILSPTRDLALQTLKFTKELGR+TDL
Sbjct: 65 VVAMARTGSGKTAAFLLPMLEKLKQHLPQSGVRALILSPTRDLALQTLKFTKELGRFTDL 124
Query: 123 RISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG 182
RISLLVGGD MESQFE+L+QNPDIIIATPGRLMHHLSE++DMSLK+VEYVVFDEAD LFG
Sbjct: 125 RISLLVGGDRMESQFEDLSQNPDIIIATPGRLMHHLSEIDDMSLKTVEYVVFDEADSLFG 184
Query: 183 MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLA 242
MGFAEQLHKIL QLSENRQTLLFSATLPSALAEFAKAGLRDP LVRLDVDTKISPDLK
Sbjct: 185 MGFAEQLHKILTQLSENRQTLLFSATLPSALAEFAKAGLRDPQLVRLDVDTKISPDLKTV 244
Query: 243 FFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQ 302
FFTLRQEEK+AAL+Y+IR+HIS+DQQTLIFVSTKHHVEFLNVLFRE+G+EPSVCYGDMDQ
Sbjct: 245 FFTLRQEEKYAALIYLIRDHISTDQQTLIFVSTKHHVEFLNVLFREDGIEPSVCYGDMDQ 304
Query: 303 DARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGR 362
DARKIHVSRFRARKTM LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGR ARAGR
Sbjct: 305 DARKIHVSRFRARKTMLLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRVARAGR 364
Query: 363 TGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGR 422
TGTAFSFVTSEDM YLLDLHLFLSKP++AAP+EEEVL D+DGVM+KIDQA ANGET+YGR
Sbjct: 365 TGTAFSFVTSEDMPYLLDLHLFLSKPVKAAPTEEEVLQDIDGVMNKIDQAFANGETVYGR 424
Query: 423 FPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGL 482
FPQTV+DLVSDRVREIIDSSA+L SLQ+ CTNAFRLY+KTKP P+KESI+R KDLP EGL
Sbjct: 425 FPQTVLDLVSDRVREIIDSSAELTSLQKACTNAFRLYTKTKPSPAKESIKRVKDLPCEGL 484
Query: 483 HPMFKNVLEGGELMALAFSERLKAFR 508
HP+FKNVLEGGELMALAFSERLK FR
Sbjct: 485 HPIFKNVLEGGELMALAFSERLKTFR 510
>gi|302758696|ref|XP_002962771.1| hypothetical protein SELMODRAFT_165331 [Selaginella moellendorffii]
gi|300169632|gb|EFJ36234.1| hypothetical protein SELMODRAFT_165331 [Selaginella moellendorffii]
Length = 786
Score = 918 bits (2372), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/764 (60%), Positives = 593/764 (77%), Gaps = 17/764 (2%)
Query: 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPM 81
SGGFESL LSP +++AI++KGY VPTPIQRKT+PLIL+G DVVAMARTGSGKTAAFL+PM
Sbjct: 23 SGGFESLGLSPPIYQAIRKKGYSVPTPIQRKTLPLILAGNDVVAMARTGSGKTAAFLIPM 82
Query: 82 LQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L++L H P+ G RALILSPTR+LALQT KF KELGR TDLRI++LVGGDSME+QFE+L+
Sbjct: 83 LEKLRAHSPKPGARALILSPTRELALQTFKFCKELGRNTDLRITVLVGGDSMETQFEQLS 142
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+NPDI+IATPGRLMHHLSEVE MSLKSVEYVVFDEAD LF MGFAEQL +IL QL E RQ
Sbjct: 143 KNPDILIATPGRLMHHLSEVEGMSLKSVEYVVFDEADRLFEMGFAEQLRQILTQLHELRQ 202
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
TLLFSATLP LA+FAKAGL+DP VRLD +TKISPDLKLAFFT+R+EEK A L++++RE
Sbjct: 203 TLLFSATLPRLLADFAKAGLKDPLTVRLDTETKISPDLKLAFFTMRKEEKLACLVHLLRE 262
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+S++QQT++FVSTKHHVEFL + + EG++ +V YG MDQ ARKI+V++FRARKTM L+
Sbjct: 263 VVSAEQQTVVFVSTKHHVEFLFEVLKSEGIDLAVVYGAMDQTARKINVAKFRARKTMILL 322
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
VTDVAARGIDIPLLDNV+N+DFP KPK+FVHRVGRAARAGRTGTA+SF+TS+++ YLLDL
Sbjct: 323 VTDVAARGIDIPLLDNVVNFDFPAKPKLFVHRVGRAARAGRTGTAYSFLTSDELPYLLDL 382
Query: 382 HLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDS 441
HLFLSKP+R AP+EE++ + G++S+ ++A++ G+T+YGRFPQ V+D +RVRE ID
Sbjct: 383 HLFLSKPVRPAPTEEDI-VSSPGLLSETEEAVSRGDTVYGRFPQLVLDTTMERVRESIDQ 441
Query: 442 SADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVLEGGELMALAFS 501
S D+ +LQ+ C+NA+RLYSKT+P PS ES +R K L +EGLHP+F+ + A +
Sbjct: 442 STDILALQKACSNAYRLYSKTRPTPSPESCKRVKTLAKEGLHPLFRKKAGTADAAAAF-A 500
Query: 502 ERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIIN-LVHQQRSSKSM 560
ERLK F+PKQT+LEAEGEAA++K + P + VDVMK+KR VH++ + + Q S +
Sbjct: 501 ERLKNFKPKQTVLEAEGEAAKAKKRKTPLADSVDVMKRKREVHDRFVKPRENAQNSLRES 560
Query: 561 EKEVEPEADSLMAKEIKETHGSKRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLN 620
+++ S++++ I G K + F+DEE++I+S+P+N H E GL+V + GFG N
Sbjct: 561 VQQLSTNEVSILSQNIC-GDGLKIISNNFRDEEFYINSIPSNRHSELGLAVDASDGFGKN 619
Query: 621 RLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT 680
RL+ VLDLV +D G+QKQK YHWDKR KKYIKLN GE+++ASGK +KTESGAKV A
Sbjct: 620 RLDTEVLDLVPEDDSGVQKQKATYHWDKRSKKYIKLNRGEKITASGK-IKTESGAKVNAG 678
Query: 681 KTGIYKKWKERSHKKVYLKGASNEGNAEETTSVPGGRHLGGNNRKFRGGKNQQ-RSVPNA 739
+YKKW ERSH KV SNE + +E T G + GG +R G+N++ + +PNA
Sbjct: 679 NRNLYKKWSERSHMKV--SKFSNENDDDEKTD--GRKRKGGFDRNNGSGRNKRMKQIPNA 734
Query: 740 HVCSEIKDLDQVRKERQKKADRIAFMKGKTQKGKKFSKNGKRGK 783
E+K +++VRK+RQ+ K K+ K F+ N +GK
Sbjct: 735 GARRELKGVEEVRKKRQES-------KNKSTKKGGFANNRGKGK 771
>gi|302758194|ref|XP_002962520.1| hypothetical protein SELMODRAFT_438217 [Selaginella moellendorffii]
gi|300169381|gb|EFJ35983.1| hypothetical protein SELMODRAFT_438217 [Selaginella moellendorffii]
Length = 821
Score = 917 bits (2370), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/774 (60%), Positives = 594/774 (76%), Gaps = 31/774 (4%)
Query: 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPM 81
SGGFESL LSP++++AI++KGY VPTPIQRKT+PLIL+G DVVAMARTGSGKTAAFL+PM
Sbjct: 52 SGGFESLGLSPSIYQAIRKKGYSVPTPIQRKTLPLILAGNDVVAMARTGSGKTAAFLIPM 111
Query: 82 LQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L++L H P+ G RALILSPTR+LALQT KF KELGR TDLRI++LVGGDSME+QFE+L+
Sbjct: 112 LEKLRAHSPKPGARALILSPTRELALQTFKFCKELGRNTDLRITVLVGGDSMETQFEQLS 171
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+NPDI+IATPGRLMHHLSEVE MSLKSVEYVVFDEAD LF MGFAEQL +IL QL E RQ
Sbjct: 172 KNPDILIATPGRLMHHLSEVEGMSLKSVEYVVFDEADRLFEMGFAEQLRQILTQLHELRQ 231
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
TLLFSATLP LA+FAKAGL+DP VRLD +TKISPDLKLAFFT+R+EEK A L++++RE
Sbjct: 232 TLLFSATLPRLLADFAKAGLKDPLTVRLDTETKISPDLKLAFFTMRKEEKLACLVHLLRE 291
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+SS+QQT++FVSTKHHVEFL + + EG++ +V YG MDQ ARKI+V++FRARKTM L+
Sbjct: 292 VVSSEQQTVVFVSTKHHVEFLFEVLKSEGIDLAVVYGAMDQTARKINVAKFRARKTMILL 351
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
VTDVAARGIDIPLLDNV+N+DFP KPK+FVHRVGRAARAGRTGTA+SF+TS+++ YLLDL
Sbjct: 352 VTDVAARGIDIPLLDNVVNFDFPAKPKLFVHRVGRAARAGRTGTAYSFLTSDELPYLLDL 411
Query: 382 HLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDS 441
HLFLSKP+R AP+EE++ + G++S+ ++A++ GET+YGRFPQ V+D +RVRE ID
Sbjct: 412 HLFLSKPVRPAPTEEDI-VSSPGLLSETEEAVSRGETVYGRFPQLVLDTTMERVRESIDQ 470
Query: 442 SADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVLEGGELMALAFS 501
S D+ +LQ+ C+NA+RLYSKT+P PS ES +R K L +EGLH +F+ A AF+
Sbjct: 471 STDILALQKACSNAYRLYSKTRPTPSPESCKRVKTLAKEGLHLLFRKKAG-TADAAAAFA 529
Query: 502 ERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKII-----------NL 550
ERLK F+PKQT+LEAEGEAA++K + P + VDVMK+KR VH++ +
Sbjct: 530 ERLKNFKPKQTVLEAEGEAAKAKKRKTPLADSVDVMKRKREVHDRFVKPRENAQNSLRES 589
Query: 551 VHQQRSSKSMEKEVEPEADSLMAKEIKETHGSKRKAKTFKDEEYFISSVPTNHHMEAGLS 610
V Q S+++ E + P+ S E G K + F+DEE++I+S+P+N H E GL+
Sbjct: 590 VQQLSSNETDECSMPPKKKSRNGGE-----GLKIISNNFRDEEFYINSIPSNRHSELGLA 644
Query: 611 VRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVK 670
V + GFG NRL+ VLDLV +D G+QKQK YHWDKR KKYIKLN GE+++ASGK +K
Sbjct: 645 VDASDGFGKNRLDTEVLDLVPEDDSGVQKQKATYHWDKRSKKYIKLNRGEKITASGK-IK 703
Query: 671 TESGAKVKATKTGIYKKWKERSHKKVYLKGASNEGNAEETTSVPGGRHLGGNNRKFRGGK 730
TESGAKV A +YKKW ERSH KV SNE + +E T G + GG +RK G+
Sbjct: 704 TESGAKVNAGNRNLYKKWAERSHMKV--SKFSNENDDDEKTD--GRKRKGGFDRKNGSGR 759
Query: 731 NQQ-RSVPNAHVCSEIKDLDQVRKERQKKADRIAFMKGKTQKGKKFSKNGKRGK 783
N++ + +PNA E+K +++VRK+RQ+ K K+ K F+ N +GK
Sbjct: 760 NKRMKQIPNAGARRELKGVEEVRKKRQES-------KNKSTKKGGFANNRGKGK 806
>gi|242081437|ref|XP_002445487.1| hypothetical protein SORBIDRAFT_07g020310 [Sorghum bicolor]
gi|241941837|gb|EES14982.1| hypothetical protein SORBIDRAFT_07g020310 [Sorghum bicolor]
Length = 666
Score = 905 bits (2339), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/597 (72%), Positives = 515/597 (86%), Gaps = 3/597 (0%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FES+ L V+R ++ KGY+VPTPIQRKTMPLIL+G DV AMARTGSGKTAAFLVPMLQR
Sbjct: 63 FESMGLCEEVYRGVRHKGYRVPTPIQRKTMPLILAGVDVAAMARTGSGKTAAFLVPMLQR 122
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L + P GVRALILSPTRDLA+QTLKF +LG++TDLR S++VGGDSMESQFE+L++ P
Sbjct: 123 LRRRDPSAGVRALILSPTRDLAMQTLKFCIQLGKFTDLRTSIIVGGDSMESQFEDLSECP 182
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
DIIIATPGRLMHHL++V+DM+L+SVEYVVFDEAD LF MGFA+ LH IL +LS+ RQTLL
Sbjct: 183 DIIIATPGRLMHHLNDVKDMTLRSVEYVVFDEADSLFSMGFAKHLHDILKKLSDTRQTLL 242
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSATLPSALA+FAKAGLRDPH+VRLD+D KISPDL+L FFTLRQEEK AALLY++RE IS
Sbjct: 243 FSATLPSALADFAKAGLRDPHIVRLDLDKKISPDLRLVFFTLRQEEKLAALLYLVRERIS 302
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
S++QT+IFVSTKHHVEFLN+LFREEGLEPS+ YG MDQ+AR IH+S+FRARKTM LIVTD
Sbjct: 303 SEEQTIIFVSTKHHVEFLNILFREEGLEPSLSYGAMDQEARMIHISKFRARKTMLLIVTD 362
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
VAARG+DIPLLDNV+NWDFP KPK+FVHRVGR AR GR GTA++FVTSEDM YLLDLHLF
Sbjct: 363 VAARGLDIPLLDNVVNWDFPAKPKLFVHRVGRVARQGRIGTAYTFVTSEDMPYLLDLHLF 422
Query: 385 LSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSAD 444
LS+P+R AP+EEE+L DMD + KID+AIANGE++YGRFPQTV+DL SD ++E+I +
Sbjct: 423 LSRPLRPAPTEEEILKDMDTINMKIDEAIANGESVYGRFPQTVLDLASDGLKEVISGCTE 482
Query: 445 LNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVLEGGELMALAFSERL 504
L +L++ C NAFRLY KT+ +PSKESI+R KDLPREGLHP+F++VL EL ALAFSERL
Sbjct: 483 LIALEKPCANAFRLYLKTRAMPSKESIKRVKDLPREGLHPIFRDVLRSDELSALAFSERL 542
Query: 505 KAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKSMEKEV 564
K+FRPKQTILEAEGEAA++++ +G S+QW+DVMKKKR VHE IINLVH Q+SS+ EV
Sbjct: 543 KSFRPKQTILEAEGEAAKARNSKG-SNQWLDVMKKKREVHEGIINLVH-QKSSEDPRPEV 600
Query: 565 EPEADSLMAKEIKETHGSKRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNR 621
E E D + E KE G KRK ++F+DE+Y+IS+VP N H+EAGLSVR ++GF NR
Sbjct: 601 E-EVDDISNWEKKEVCGKKRKLQSFRDEDYYISTVPQNQHLEAGLSVRDNEGFVENR 656
>gi|168065191|ref|XP_001784538.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663919|gb|EDQ50659.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 748
Score = 904 bits (2335), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 447/750 (59%), Positives = 579/750 (77%), Gaps = 6/750 (0%)
Query: 17 KKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAA 76
+KK KSGGFE+L LS VFRA+KRKGY++PTPIQRKT+PLIL+G DVVAMARTGSGKTAA
Sbjct: 1 EKKKKSGGFETLGLSLPVFRAVKRKGYRIPTPIQRKTLPLILAGYDVVAMARTGSGKTAA 60
Query: 77 FLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQ 136
FL+PM+++L +H G RA+ILSP+R+LALQT KF KEL +YTDL+I++LVGGDSME+Q
Sbjct: 61 FLIPMIEKLVEHSNNAGARAVILSPSRELALQTFKFCKELSKYTDLKIAILVGGDSMEAQ 120
Query: 137 FEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL 196
FE+LA NPD+IIATPGRLMHHLSEVE MSL++VEY+VFDEAD LF MGFAEQL +I+ L
Sbjct: 121 FEQLAGNPDVIIATPGRLMHHLSEVEGMSLRTVEYIVFDEADRLFEMGFAEQLRQIMSHL 180
Query: 197 SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALL 256
E+RQ LLFSATLP LA+FAKAGLRDPHLVRLDV+++ISPDL+L+FFT+R +EK AAL+
Sbjct: 181 GESRQVLLFSATLPRLLADFAKAGLRDPHLVRLDVESRISPDLQLSFFTVRHDEKPAALV 240
Query: 257 YMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK 316
+++RE I ++QQT++FV+TKHHVEFL L + EG++ SV YG MDQ ARKIH+++FRA K
Sbjct: 241 HLVREVIPAEQQTIVFVATKHHVEFLYELLKTEGIDISVVYGSMDQAARKIHIAKFRAGK 300
Query: 317 TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMA 376
T L+VTDVAARGIDIPLLDNVIN+DFPPKPK+FVHRVGRAARAGRTGT++SFVTSE+M
Sbjct: 301 TKLLLVTDVAARGIDIPLLDNVINYDFPPKPKLFVHRVGRAARAGRTGTSYSFVTSEEMP 360
Query: 377 YLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVR 436
Y+LDLHL+LSK IR AP EE ++ D + VM+ ++ A GETI+GR PQ+V+D DR+R
Sbjct: 361 YVLDLHLYLSKGIRPAPLEEAIVADREKVMADLEAASKRGETIFGRMPQSVLDFGMDRLR 420
Query: 437 EIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVLEGGELM 496
E+I ++ DL LQ+ NA++LY KT+P + ES +R K REGLHP + L E
Sbjct: 421 EVISNNDDLIGLQKAAKNAYKLYVKTRPPAALESAKRAKGFAREGLHPSLRQQLRNVEAE 480
Query: 497 ALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRS 556
AF+ERLKA RP+QT+LEAE EAA+ K+ P +Q V++MK+KR VHE +I QQ +
Sbjct: 481 VAAFTERLKAIRPRQTVLEAEAEAAKGKNKNVPIAQVVEIMKRKREVHEHVIAAAAQQHT 540
Query: 557 SKSMEKEVEPEADSLMAKEIKETHGSKRK--AKTFKDEEYFISSVPTNHHMEAGLSVRSD 614
+++ +E +P K K+T K+K K+++DEE+FI +VP N HMEAGLSV+
Sbjct: 541 TEATAEE-QPTMKR-RRKGAKDTSDVKQKLIPKSYRDEEFFIEAVPRNRHMEAGLSVQGG 598
Query: 615 QGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESG 674
GFG +R++ VLDL+ADD+ G+QKQ YHWDK+ KK++KLN GE+V+ASGK +KTESG
Sbjct: 599 DGFGRSRMDTEVLDLIADDAAGVQKQNATYHWDKKNKKFVKLNKGEQVTASGK-IKTESG 657
Query: 675 AKVKATKTGIYKKWKERSHKKVYLKGASNEG-NAEETTSVPGGRHLGGNNRKFRGGKNQQ 733
+KV A G+YKKWKERSH V G +++ A + GG + + +
Sbjct: 658 SKVNAGNHGLYKKWKERSHMHVPTHGEADDAPGALDGAPTSSRGGRGGRGGRGSSRGDSR 717
Query: 734 RSVPNAHVCSEIKDLDQVRKERQKKADRIA 763
S+PNA+V +E++ +++VRKERQKKA R A
Sbjct: 718 GSLPNANVKNELRGVEEVRKERQKKAMRSA 747
>gi|384252494|gb|EIE25970.1| DEAD-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 806
Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/765 (48%), Positives = 497/765 (64%), Gaps = 47/765 (6%)
Query: 16 QKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTA 75
++KK K G FE+L LSP + R IKRKGY++PTPIQR+T+PL L+G DVV MARTGSGKTA
Sbjct: 37 KRKKLKPGSFETLGLSPVIIRGIKRKGYQLPTPIQRRTLPLALTGQDVVGMARTGSGKTA 96
Query: 76 AFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMES 135
AF++PML+RL +H P+ G RALIL+PTR+L LQ K KEL RYTDLR ++LVGGDSME+
Sbjct: 97 AFVIPMLERLREHSPRAGARALILAPTRELTLQLHKVVKELSRYTDLRTAVLVGGDSMEA 156
Query: 136 QFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQ 195
QF ELA NPDI++ATPGRLMHHL EVE MSL++V+Y VFDEAD LF MGFAEQL +L +
Sbjct: 157 QFAELAANPDILLATPGRLMHHLQEVEGMSLQTVQYCVFDEADQLFEMGFAEQLRAVLSK 216
Query: 196 LSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAAL 255
+ + RQTLLFSATLP+ALAEFA+AGL++P VRLD DTK+SP+L+L F LRQE+K AAL
Sbjct: 217 MGDARQTLLFSATLPAALAEFARAGLKNPAFVRLDADTKLSPNLQLCFACLRQEDKTAAL 276
Query: 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRAR 315
L+++ E I TLIF +T+HHVEFL+ L EGL + YG MDQ AR+IH +FRA
Sbjct: 277 LWLLHEVIPEGSPTLIFTATRHHVEFLHTLLTREGLRSACVYGQMDQAARRIHSGKFRAG 336
Query: 316 KTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDM 375
+ LIVTDVAARGIDIPLLDNVIN+DFP +PK+FVHR GRAARAGR+GTA+S T E++
Sbjct: 337 QVNILIVTDVAARGIDIPLLDNVINYDFPARPKLFVHRAGRAARAGRSGTAYSLFTREEL 396
Query: 376 AYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRV 435
YLLDLHLFLS+ ++ AP + D ++YG FPQ ++ ++RV
Sbjct: 397 PYLLDLHLFLSRGVQPAPVASLAQAAAVAGGASSDV------SLYGTFPQAALEDNAERV 450
Query: 436 REIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVLEGGEL 495
R + ++++L LQR+C NA+ LY +T+P S ES+ R + +P G+HP L
Sbjct: 451 RAAVANASELQGLQRSCANAWLLYKRTRPAASPESVTRARSMPAAGVHPDLAAACPQSSL 510
Query: 496 MALAFSE-------RLKAFRPKQTILEAEGEAAR----SKHLQGPS-------SQWVDVM 537
L E RL+A+RP T+LEAE AR + + GP + +++VM
Sbjct: 511 AGLEAQEDMANIAARLRAYRPSATVLEAEVAPARRGEGAGCMSGPGMTASHGPAGFLEVM 570
Query: 538 KKKRAVHEKIINLVHQQRSSKSM-----EKEVEPEADSLMAKEIKETHGSKRKAKTFKDE 592
+ KR ++ Q+ +K+ + V+P A A E + F+D
Sbjct: 571 RLKRGRSKR-------QQENKAAGDAVSQGSVDPAALRRAASEAAREGDQALEQGRFRDA 623
Query: 593 EYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKK 652
E FI+S ++ + + G +V G L + AAVLDL+ DD+ G+ Q++ +HWDKR +
Sbjct: 624 ECFIASTKSSRYEDEGFAVHRSGGDDL--MSAAVLDLMEDDTAGMAAQQRRFHWDKRKRC 681
Query: 653 YIKLNNGERVSASGKVVKTESG--AKVKATKTGIYKKWKERSHKKVYLKGASNEGNAEET 710
YI+L E+V A GK +TESG + + +G+YKKW S +V G + ++T
Sbjct: 682 YIQLQPNEKVQA-GKRKRTESGKLGQKGSQPSGLYKKWVRSSKMRVPATGELPDAGVKDT 740
Query: 711 TSVPGGRHLGGNNRKFRGGKNQQRSV-PNAHVCSEIKDLDQVRKE 754
++ +GG RG KN +S P AH+ E+K+ DQVRKE
Sbjct: 741 ANLSDRFKMGG-----RGWKNPFKSQGPTAHIRDELKNQDQVRKE 780
>gi|348685911|gb|EGZ25726.1| hypothetical protein PHYSODRAFT_486355 [Phytophthora sojae]
Length = 852
Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/822 (43%), Positives = 506/822 (61%), Gaps = 75/822 (9%)
Query: 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPML 82
GGF+ L LSP VFR + GYKVPTPIQRK++P++LSG D VAMARTGSGKTAAFL+PML
Sbjct: 36 GGFQHLGLSPPVFRGVMAMGYKVPTPIQRKSLPIVLSGKDCVAMARTGSGKTAAFLIPML 95
Query: 83 QRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
++L +H + GVRA++LSPTR+LA+QTL+F K+L ++T L+++L+VGG+ M+ QFE +A
Sbjct: 96 EKLKEHSTKIGVRAVVLSPTRELAVQTLRFAKQLSKFTSLKMALIVGGEGMDQQFEAIAA 155
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
NPD+++ATPGRLMHHL E+ D +LK+VEYVVFDEAD +F MGFAEQL +IL + +RQT
Sbjct: 156 NPDVLVATPGRLMHHLQEIPDFNLKAVEYVVFDEADRIFEMGFAEQLQEILKNMPTSRQT 215
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
LLFSATLP AL +FA+AGL DP L+RLDV+ KIS +LK+AFFT+R +K A LYM+RE
Sbjct: 216 LLFSATLPKALVQFARAGLSDPELIRLDVENKISENLKMAFFTVRSLDKPALFLYMVREF 275
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
+ +QT++F +T+HHVEFL+ L +E S YGDMDQ +RKI++ +FRA+KT LIV
Sbjct: 276 LPKGEQTIVFAATRHHVEFLHALLAANHIEASCAYGDMDQASRKINLGKFRAKKTSLLIV 335
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
TDVAARGIDIPLL+NV+N+ FPP K+FVHRVGRAARAGR+GTAFSFV ++ +++DLH
Sbjct: 336 TDVAARGIDIPLLNNVLNYSFPPTAKLFVHRVGRAARAGRSGTAFSFVDPDESPFMVDLH 395
Query: 383 LFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSS 442
L++ + R S E+ +S++ + YG FP +ID ++ ++E++ S
Sbjct: 396 LYIGR--RLEDSSPELTDTKPYSLSEMRVE----DVHYGAFPNELIDQENEAIQELMRSH 449
Query: 443 ADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKN--VLEGGELMALAF 500
++ L + C NA++ Y++T+ PSK SIRRGK+L + +HP+F+ VLE + A+
Sbjct: 450 PQVSPLVKVCDNAYKAYARTRADPSKLSIRRGKELAVKKMHPLFQKEYVLEKSKADKAAY 509
Query: 501 SERLKAFRPKQTILE-AEGEAARSKHLQGPSSQWVDVMKKKRAVHEKII----------- 548
+ L+ FRP QTI E A G + +K SS V +M KKR +H KII
Sbjct: 510 IDSLQTFRPPQTIFEIAAGAHSSAKR----SSPGVQMMVKKRKLHGKIIATETTKAADKV 565
Query: 549 ---------------------NLVHQQRSSKSMEKEV---EPEADSLMAKEIKETHGSKR 584
+ K ++K V E E D + + G+
Sbjct: 566 KAKEEAAALNAAADEEEATGATFFLSKHERKQLKKRVAAGEKEEDVMKELAATKEQGAST 625
Query: 585 K----------AKTFKDEEYFISSVPTNHHMEAGLSVRSDQG-----FGLNRLEAAVLDL 629
A TFKD+E +I + + G ++ G F RLE A+LD+
Sbjct: 626 TDSKDQDDDEGASTFKDDENYIGYMKDGDYTTEGFLAKNADGGKVNAFAEARLEEAILDV 685
Query: 630 VADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKV-KATKTG-IYKK 687
D++ + K++++ HWD R KK++K GE S + ESG V K + G +Y+K
Sbjct: 686 NPDEAIEMNKKRRILHWDVRKKKFVKTTAGELTSQGTLKRRNESGVSVRKKQQVGEVYRK 745
Query: 688 WKERSHKKVYLKGASNEGNAEETTSVPGGRHLGG-NNRKFRGGKNQ-QRSVPNAHVCSEI 745
W+++ HK+V G E N + GGR L N RK RGG +RS N E+
Sbjct: 746 WQQKQHKRVAGGGVEMEDNDD-----AGGRKLDYRNGRKPRGGAAMAKRSSVNKFAKDEL 800
Query: 746 KDLDQVRKERQKKADR--IAFMKG-KTQKGKKFSKNGKRGKP 784
++RKE ++KA + G K+++GK K G P
Sbjct: 801 MSEGKIRKEEKRKARSRGVKVTSGVKSKRGKGNIKGKSHGAP 842
>gi|301111750|ref|XP_002904954.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262095284|gb|EEY53336.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 847
Score = 636 bits (1641), Expect = e-179, Method: Compositional matrix adjust.
Identities = 352/788 (44%), Positives = 494/788 (62%), Gaps = 65/788 (8%)
Query: 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPML 82
GGF+ L LSP VFR + GYKVPTPIQRK++P++LSG D VAMARTGSGKTAAFLVPM+
Sbjct: 36 GGFQHLGLSPLVFRGVMAMGYKVPTPIQRKSLPIVLSGKDCVAMARTGSGKTAAFLVPMV 95
Query: 83 QRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
++L +H + GVRA++LSPTR+LA+QTL+F K+L ++T L+++L+VGG+ M+ QFE +A
Sbjct: 96 EKLKEHSTKIGVRAVVLSPTRELAVQTLRFAKQLSKFTSLKMALIVGGEGMDQQFEAIAS 155
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
NPD+++ATPGRLMH L E+ D +LK+VEYVVFDEAD +F MGFAEQL +IL + +RQT
Sbjct: 156 NPDVLVATPGRLMHLLQEIPDFNLKAVEYVVFDEADRIFEMGFAEQLQEILKNMPTSRQT 215
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
LLFSATLP AL +FA+AGL DP L+RLDV+ KIS +LK+AFFT+R +K A LYM+RE
Sbjct: 216 LLFSATLPKALVQFARAGLSDPELIRLDVENKISENLKMAFFTVRSLDKPALFLYMVREF 275
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
+ QT++F +T+HHVEFL+ L +E S YGDMDQ +RKI++ +FRA+KT LIV
Sbjct: 276 LPKGDQTIVFAATRHHVEFLHALLAANHIEASCAYGDMDQASRKINLGKFRAKKTNLLIV 335
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
TDVAARGIDIPLL+NV+N+ FPP K+FVHRVGRAARAGR+GTAFSFV ++ +++DLH
Sbjct: 336 TDVAARGIDIPLLNNVLNYSFPPTAKLFVHRVGRAARAGRSGTAFSFVDPDETPFMVDLH 395
Query: 383 LFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSS 442
L++ + + + EE G + + YG FP +ID ++ ++E + S
Sbjct: 396 LYIGRRLEDSSPEESA-----GTKPYSLSTMRVEDVHYGAFPNELIDQENEALQETVRSH 450
Query: 443 ADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKN--VLEGGELMALAF 500
++ L + C NA++ Y++T+ PSK SIRRGK+L + +HP+F+ VL+ + A+
Sbjct: 451 PQVSPLVKVCDNAYKAYARTRADPSKNSIRRGKELAVKKVHPLFQQEYVLDESKADKAAY 510
Query: 501 SERLKAFRPKQTILE-AEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKS 559
+ L+ FRP QTI E A G + +K SS V +M KKR +H KII + + K
Sbjct: 511 IDSLQTFRPPQTIFEIAAGAHSSAKR----SSPGVLMMVKKRKLHGKIIATETTKAADKV 566
Query: 560 MEKEV---------------------------------EPEADSL----MAKEIKETHGS 582
KE E E D + AKE T+
Sbjct: 567 KAKEEATALNAAAEKEEKKAFFLSKHERKQLKKRVAAGEKEEDVMKQLAAAKEQGATNNE 626
Query: 583 KRKA--KTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLN-----RLEAAVLDLVADDSG 635
+ +FKD+E +I + + G ++ G +N RLE A+LD+ D++
Sbjct: 627 TQDEGDASFKDDENYIGYMKDGDYTTEGFLAKNADGGKVNAFAEARLEEAILDVNPDEAI 686
Query: 636 GLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKV-KATKTG-IYKKWKERSH 693
+ K++++ HWD R KK++K GE S + ESG V K + G +Y+KW+++ H
Sbjct: 687 EMNKKRRILHWDVRKKKFVKTTAGELTSQGTLKRRNESGVSVRKKQQVGEVYRKWQQKQH 746
Query: 694 KKVYLKGASNEGNAEETTSVPGGRHLGG-NNRKFRGGK-NQQRSVPNAHVCSEIKDLDQV 751
K+V G E ++ T GGR L N RK RGG +RS N H E+ ++
Sbjct: 747 KRV--AGGGVEVEDDDNT---GGRKLDYRNGRKPRGGAVMAKRSGVNKHAKDELMSEGKI 801
Query: 752 RKERQKKA 759
RKE ++KA
Sbjct: 802 RKEEKRKA 809
>gi|300796770|ref|NP_001178477.1| ATP-dependent RNA helicase DDX54 [Rattus norvegicus]
Length = 874
Score = 606 bits (1563), Expect = e-170, Method: Compositional matrix adjust.
Identities = 344/786 (43%), Positives = 490/786 (62%), Gaps = 66/786 (8%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
R + KKK KSGGF+S+ LS VF+ I +KGYKVPTPIQRKT+P+IL G DVVAMARTGSG
Sbjct: 85 RAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSG 144
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTA FL+PM +RL Q G RALILSPTR+LALQT+KFTKELG++T L+ +L++GGD
Sbjct: 145 KTACFLLPMFERLKARSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDK 204
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
ME QF L +NPDIIIATPGRL+H E+ ++ L+SVEYVVFDEAD LF MGFAEQL +I
Sbjct: 205 MEDQFAALHENPDIIIATPGRLVHVAVEM-NLKLQSVEYVVFDEADRLFEMGFAEQLQEI 263
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
+G+L QT+LFSATLP L EFA+AGL +P L+RLDVD+K++ LK +FF +R++ K
Sbjct: 264 IGRLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDSKLNEQLKTSFFLVREDTKT 323
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
A LLY+++ + Q ++FV+TKHH E+L L +G+ + Y +DQ ARKI++++F
Sbjct: 324 AVLLYLLQNVVRPQDQNVVFVATKHHAEYLTELLTGQGVSCAHIYSALDQTARKINLAKF 383
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
K LIVTD+AARG+DIPLLDNVIN+ FP K K+F+HRVGR ARAGR+GTA+S V
Sbjct: 384 THNKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAP 443
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEEEV---LLDMDGVMSKIDQAIANGETIYGRFPQTVID 429
+++ YLLDLHLFL + + A EE + DGV+ GR PQ+V+D
Sbjct: 444 DEVPYLLDLHLFLGRSVTLARPHEEPSSGAVGRDGVL--------------GRVPQSVVD 489
Query: 430 LVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK--DLPREGLHPMFK 487
++ + +S +L LQR NA + Y +++P PS ESI+R K DL GLHP+F
Sbjct: 490 DEDSSLQTALQASLELQGLQRVANNAQQQYLRSRPAPSPESIKRAKELDLAELGLHPLFS 549
Query: 488 NVLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKI 547
+ E GEL L + +K +R + TI E A SK PSSQ +M+ KR K
Sbjct: 550 SCFEEGELQRLRLVDSIKNYRTRTTIFEIN---ASSKD---PSSQ---MMRAKRQRDRKA 600
Query: 548 INLVHQQRSSKS-------MEKEVEPEADSLMAKEIK---------------ETHGSKRK 585
I HQ R + ++E+ + + M + ++ G+KR+
Sbjct: 601 ITSFHQGRQERQDGPADPVPQRELPQKEEEDMVETVEGVFTEVVGQKQPRPGPNQGAKRR 660
Query: 586 AK--TFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQV 643
K + +D+E+++ P + E GLSV G ++ AVLDL+ D++ + + +Q
Sbjct: 661 RKEASQRDQEFYVPYRPKDFDSERGLSVSGAGGAFEQQVAGAVLDLMGDEAQNMSRGRQQ 720
Query: 644 YHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGAS 702
WD++ K+++ G+ K +KTESG + ++ K +Y+KWK++ +K+ + +
Sbjct: 721 LKWDRKKKRFV----GQSGQEDKKKIKTESGRFISSSYKRDLYQKWKQK--QKIDDRDSE 774
Query: 703 NEGNAEETTSVPGGRHLGGNNRKFRGGKNQ--QRSVPNAHVCSEIKDLDQVRKERQKKAD 760
EG + P H GG + +GG+ + SVP H+ SE+K +Q+ K+R ++A
Sbjct: 775 EEGPSNRRGPGP---HRGGKRGRSQGGQGRWYASSVPTGHMRSELKTKEQILKQR-RQAQ 830
Query: 761 RIAFMK 766
+ F++
Sbjct: 831 KQRFLQ 836
>gi|198433176|ref|XP_002130371.1| PREDICTED: similar to ATP-dependent RNA helicase [Ciona
intestinalis]
Length = 816
Score = 605 bits (1560), Expect = e-170, Method: Compositional matrix adjust.
Identities = 351/790 (44%), Positives = 484/790 (61%), Gaps = 78/790 (9%)
Query: 5 SSKAELKRR----EKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSG 60
+S+AEL R + +KK KSGGF+S+ LS +VF+ + RKGYKVPTPIQRK +PLILS
Sbjct: 46 TSEAELNTRKLVTQMNRKKKKSGGFQSMGLSHSVFKGVIRKGYKVPTPIQRKCIPLILSD 105
Query: 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120
DVVAMARTGSGKTAAFL+PM ++L G RAL+LSPTR+LALQTLKF KELGR+T
Sbjct: 106 KDVVAMARTGSGKTAAFLIPMFEKLQGAQSGAGARALLLSPTRELALQTLKFVKELGRFT 165
Query: 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL 180
LR + ++GGDSM+ QF + +NPD+ IATPGRLMH L E+E + L ++ YVVFDEAD L
Sbjct: 166 SLRTACILGGDSMDEQFSAMHENPDVTIATPGRLMHVLIEME-LRLSNIHYVVFDEADRL 224
Query: 181 FGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLK 240
F +GF EQLH++L +L ++RQTLLFSATLP L EFAKAGL DP LVRLD+D+K+S LK
Sbjct: 225 FELGFQEQLHEVLHRLPDDRQTLLFSATLPKQLVEFAKAGLNDPTLVRLDLDSKLSDQLK 284
Query: 241 LAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDM 300
LAF LR+++K AL++++R +QT++FVSTKHHVEF+ + + + S Y +
Sbjct: 285 LAFLHLREDDKLPALIHLLRNVFKETEQTVVFVSTKHHVEFVKDVLKLFSINCSYVYSSL 344
Query: 301 DQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARA 360
D ARKI++++FR +KTM LIVTDVAARG+DIP+LDNVIN+ FP K K+FVHRVGR ARA
Sbjct: 345 DHTARKINIAKFRNKKTMVLIVTDVAARGLDIPMLDNVINFSFPAKSKLFVHRVGRVARA 404
Query: 361 GRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIY 420
GRTGTA+S V E++AY++DLHLFL +P+ A K Q + +Y
Sbjct: 405 GRTGTAYSLVCPEELAYVIDLHLFLGRPLNFA---------------KTGQTYQAWDNVY 449
Query: 421 GRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPRE 480
GR Q +ID ++ I ++S DL +L + NA++ Y K++P S ESI+R +++ +
Sbjct: 450 GRVSQRIIDEEQAALQNIKNNS-DLQALLKVAQNAYKQYLKSRPAASSESIKRSREILQS 508
Query: 481 ---GLHPMFKNVLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVM 537
LHP++ + E L ++ ++P TI E G A+S + +V M
Sbjct: 509 TNIALHPIYDESGDTSEEARLELLSSVRKYKPNSTIFEI-GATAKS------TGSYV--M 559
Query: 538 KKKRAVHEKIINLVHQQRSSKSMEKE------------------------------VEPE 567
KK R H K + HQQ+ K EK+ V P
Sbjct: 560 KKTRKRHVKFVE-KHQQKLRKLAEKDEVSALQVKENIPEVVNEEEEEDLKNTFSKIVRPT 618
Query: 568 ADSLMAKEIKETHGSKRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVL 627
+ E+K+ KR AK FKD E++I P +H+ EAGLS+ + + L
Sbjct: 619 NNIREFTEMKKKKKKKRTAKDFKDSEFYIDYKPKDHNTEAGLSIGNGRTNFAKEASNVTL 678
Query: 628 DLVADDSGGLQKQK-QVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIY 685
DL+ D+ L++QK Q WD++ K+++ + +A K ++TESGA + +T K IY
Sbjct: 679 DLIGDEDKTLRQQKMQRKVWDRKKKRFVNAQDAG-PTAPKKKIRTESGALISSTYKKNIY 737
Query: 686 KKWKERSHKKVYLKGASNEGNAEETTSVPGGRHLGGNNRKFRGGKNQQRSVPNAHVCSEI 745
++WK KK L E + TS GR G NR+ G QQ S N+ + SE+
Sbjct: 738 QEWK----KKTKLADRDEEVYTGDGTS---GRWRAGQNRRLSG--KQQNS--NSKIKSEL 786
Query: 746 KDLDQVRKER 755
K +Q+ K+R
Sbjct: 787 KRPEQILKQR 796
>gi|291239093|ref|XP_002739459.1| PREDICTED: ATP-dependent RNA helicase DDX54-like [Saccoglossus
kowalevskii]
Length = 851
Score = 601 bits (1550), Expect = e-169, Method: Compositional matrix adjust.
Identities = 350/836 (41%), Positives = 510/836 (61%), Gaps = 95/836 (11%)
Query: 5 SSKAELKRRE----KQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSG 60
SS AEL R+ + +KK KSGGF+++ LS V + I RKGYKVPTPIQRK +P+I+
Sbjct: 56 SSDAELNTRKMVAKQNRKKKKSGGFQAMGLSMGVLKGIFRKGYKVPTPIQRKCVPIIMDR 115
Query: 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120
DVVAMARTGSGKTAAFL+PM ++L +H + G RALILSPTR+LA+QTLKFT+ELG++
Sbjct: 116 KDVVAMARTGSGKTAAFLIPMFEKLQRHSAKTGARALILSPTRELAVQTLKFTRELGKFL 175
Query: 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL 180
LR ++++GGD M+ QF L +NPDIIIATPGRL+H L E+ D+ L S+EYVVFDEAD L
Sbjct: 176 GLRSAVILGGDKMDDQFAALHENPDIIIATPGRLLHVLVEM-DLKLNSLEYVVFDEADRL 234
Query: 181 FGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLK 240
F MGFAEQL +I+ +L ++RQTLLFSATLP L EFA+AGL DP L+RLDV++K+S LK
Sbjct: 235 FEMGFAEQLEEIIQRLPDDRQTLLFSATLPKLLVEFARAGLNDPMLIRLDVESKLSDQLK 294
Query: 241 LAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDM 300
LAFF+ R ++K + LL+++R I +QT+IF++T HHV+++ + + G+ Y +
Sbjct: 295 LAFFSTRADDKISLLLHLLRNVIKPSEQTVIFLATMHHVDYIKEILTQAGINCCHIYSSL 354
Query: 301 DQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARA 360
D ARKI+V++F +K M ++VTDVAARGIDIPLLDNVIN++FP KPK+FVHRVGR ARA
Sbjct: 355 DPAARKINVAKFTHKKAMVMLVTDVAARGIDIPLLDNVINFNFPAKPKLFVHRVGRVARA 414
Query: 361 GRTGTAFSFVTSEDMAYLLDLHLFLSKPIR-AAPSEEEVLLDMDGVMSKIDQAIANGETI 419
GRTGTA+S + S+++ YLLDLHLFL +P++ A+PS + + +
Sbjct: 415 GRTGTAYSLIASDELPYLLDLHLFLGRPLKCASPSHSR-----------------DADYL 457
Query: 420 YGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK--DL 477
+GR PQ V+D V + + S D+++++ C NA++ Y K++P P+ ES++R K D+
Sbjct: 458 FGRVPQRVVDDEEATVLTLHEQSLDIDTMKHVCNNAYKQYVKSRPAPAPESVKRMKEIDV 517
Query: 478 PREGLHPMFKNVLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVM 537
R +HP+F ++ E + + +K ++P TI E G + +S+ P VM
Sbjct: 518 SRIAIHPIFGEYIDKDENNRVQMVDEIKKYKPHTTIFEV-GVSTKSQ----PK---YSVM 569
Query: 538 KKKRAVHEK------------------IINLVHQ---QRSSKSMEKEVEPEADSLMA--- 573
K KR +H + N+ + + S +K++E +++A
Sbjct: 570 KAKRRLHSNAIEKYKVKKKEEIENTAMLQNIKEKAVFSSTEMSTDKDLEAVFSTVVAPGL 629
Query: 574 KEIKETHGSKRKAK------TFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVL 627
K + +RK K + +D++Y+I +HH E GLS+ D F + A+L
Sbjct: 630 KRKRRIEAMERKTKKQKPVVSVRDDDYYIHYRSQDHHAERGLSI-GDCSFD-QQASRAML 687
Query: 628 DLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYK 686
DL DD+ ++K K WD++ KK+I+ E+ + K +KTESG + A+ K+ IYK
Sbjct: 688 DLTGDDADMMKKHKDNIKWDRKKKKFIRDAGDEQ--SKKKKIKTESGTYIHASYKSNIYK 745
Query: 687 KWKERSHKKVYL--------------KGASNEGNAEETTSVPGGRHLGGNNRKFRGGKNQ 732
W E+S KG +G P G++ G ++K + K
Sbjct: 746 DWLEKSKMDEMDEEEEEEKEKKTRKHKGGKWKG--------PQGKNKGSFHQKGKSRKPN 797
Query: 733 QRSVPNA---HVCSEIKDLDQVRKERQKKADRIAFMKGKTQKGKKFSKNGKRGKPR 785
Q P V SE+K DQ+ K R+ A + F++ KT++ K ++ RGKPR
Sbjct: 798 QSKGPGGKRKKVRSEMKSKDQILKNRKTDAKK-NFLR-KTREKKAMMRSRGRGKPR 851
>gi|443712578|gb|ELU05832.1| hypothetical protein CAPTEDRAFT_148777 [Capitella teleta]
Length = 902
Score = 600 bits (1548), Expect = e-169, Method: Compositional matrix adjust.
Identities = 335/721 (46%), Positives = 461/721 (63%), Gaps = 59/721 (8%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
R++ +KK KSGGF+S+ LS +VF I R+GYKVPTPIQRKT+PLIL G DVVAMARTGSG
Sbjct: 139 RQQNRKKKKSGGFQSMGLSHHVFTGIMRRGYKVPTPIQRKTIPLILDGKDVVAMARTGSG 198
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTAAFL+PM ++L H+P G RALIL+PTR+LALQTLKFTKELG++T L+ ++++GGDS
Sbjct: 199 KTAAFLIPMFEKLKGHLPTGA-RALILAPTRELALQTLKFTKELGKFTGLKPAVILGGDS 257
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
ME+QF + +NPDI+IATPGR MH L E+E M L V+YVV+DEAD LF MGF+EQLH+I
Sbjct: 258 MENQFAAIHENPDILIATPGRFMHILVEME-MKLSEVQYVVYDEADRLFEMGFSEQLHEI 316
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
L +L E RQTLLFSATLP L +FAKAGL DP L+RLDVD+KISP L+L F R ++K
Sbjct: 317 LRRLPETRQTLLFSATLPKLLVDFAKAGLHDPSLIRLDVDSKISPHLQLQFLQCRSDDKV 376
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
A LL+++R I +QT++F++TKHHVE+LN++ E ++ S Y +DQ ARKI V++F
Sbjct: 377 ALLLHLLRNVIKPSEQTVVFLATKHHVEYLNMILTEAHIDCSYTYSSLDQTARKIQVAKF 436
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
RA +T L+VTD+AARGIDIP+LDNVIN+ FPPK K+FVHRVGR ARAGR+GTA+S V
Sbjct: 437 RANRTRVLLVTDLAARGIDIPMLDNVINYHFPPKCKLFVHRVGRVARAGRSGTAYSLVAQ 496
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIAN-GETIYGRFPQTVIDLV 431
+++A++LDL LFL +P+ S D+ IA+ ++ G PQ++ID
Sbjct: 497 DELAHVLDLQLFLGRPLTWVLS---------------DKPIADESASLIGCAPQSIIDEE 541
Query: 432 SDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPRE--GLHPMF--K 487
+R+ + + D+ + + +NAF+ Y K+ P S ESI+R K++ GLHP+F
Sbjct: 542 EADLRKWHE-NVDIFGMTKVISNAFKQYMKSSPAASTESIKRVKEMANLNIGLHPLFGKS 600
Query: 488 NVLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKI 547
++ GE ++ ++P+ TI E A SQ D+MK+KR H K+
Sbjct: 601 GGIQRGEEQRTQLLAAMRHYKPQTTIFEINSTA---------KSQSFDIMKEKREYHSKV 651
Query: 548 INLVHQQRSSKSME------------KEVEPEADSLMAKEIKETHGSKRKAKTFKDEEYF 595
I Q+R +S + K V+ EAD + + K + F+ +E +
Sbjct: 652 IAKAQQKREEQSEKLMQINKKNASSTKAVD-EADLTGVFNTESSEKRSAKKRKFEVDENY 710
Query: 596 ISSVPTNHHMEAGLSVRSDQGFGLNRLEA-AVLDLVADDSGGLQKQKQVYHWDKRGKKYI 654
IS P +H E L + G R A A LDL D+ + K WD++ K+++
Sbjct: 711 ISYRPKDHDTERALGL----GSSFERDAASAALDLTGDEESKQRASKGQMKWDRKKKRFV 766
Query: 655 KLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNAEETTSV 713
N + + K VKTESGA VKA+ KT +YK W E+ K A NE ++++ S
Sbjct: 767 --NETGKEAGGNKKVKTESGAWVKASYKTNVYKDWLEK------CKVAENEDDSDDEGSN 818
Query: 714 P 714
P
Sbjct: 819 P 819
>gi|147898895|ref|NP_001088266.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 [Xenopus laevis]
gi|83318280|gb|AAI08845.1| LOC495097 protein [Xenopus laevis]
Length = 846
Score = 597 bits (1540), Expect = e-168, Method: Compositional matrix adjust.
Identities = 353/794 (44%), Positives = 487/794 (61%), Gaps = 75/794 (9%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
R + KKK KSGGF+S+ LS V++ + +KGYKVPTPIQRK +P+IL G DVVAMARTGSG
Sbjct: 65 RAQNKKKKKSGGFQSMGLSYPVYKGVMKKGYKVPTPIQRKVVPVILDGKDVVAMARTGSG 124
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTA FL+PM ++L H Q GVR LILSPTR+LALQTLKFTKELG++T L+ +L++GGD
Sbjct: 125 KTACFLIPMFEKLKAHSAQTGVRGLILSPTRELALQTLKFTKELGKFTGLKTALILGGDR 184
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
ME QF L +NPDIIIATPGRLMH E+ ++ L+SVEYVVFDEAD LF MGFAEQL +I
Sbjct: 185 MEDQFAALHENPDIIIATPGRLMHVAIEM-NLKLRSVEYVVFDEADRLFEMGFAEQLQEI 243
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
+ +L E RQTLLFSATLP L EFA+AGL +P L+RLDVDTK+S LKL+FF +R E+K
Sbjct: 244 ISRLPETRQTLLFSATLPKMLLEFARAGLTEPVLIRLDVDTKLSDQLKLSFFNVRVEDKP 303
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
A LL+++R + +QT+IFV+TKHH E+L L +G+ S Y +DQ ARKI++ F
Sbjct: 304 AVLLHLLRCVVKPQEQTVIFVATKHHAEYLRELLDMQGIPCSHIYSSLDQTARKINLGLF 363
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
K L+VTDVAARGIDIP+LDNVIN++FPPK K+F+HRVGR ARAGR+GTA+SF+
Sbjct: 364 LHGKVRALLVTDVAARGIDIPMLDNVINYNFPPKAKLFLHRVGRVARAGRSGTAYSFIAP 423
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEE-EVLLDMDGVMSKIDQAIANGETIYGRFPQTVID-- 429
+++ Y+ DLHLFL +P++ A ++ E D DGV+ GR PQ++ID
Sbjct: 424 DEIPYVYDLHLFLGRPLKLANAQNIETEADTDGVL--------------GRVPQSLIDDE 469
Query: 430 ---LVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPRE--GLHP 484
L++DR R S +L +L + NA++ Y K++P PS ESI+R KD G+HP
Sbjct: 470 DALLITDRER-----SLELQNLHQVSENAYKQYIKSRPTPSPESIKRVKDANYNLLGVHP 524
Query: 485 MFKNVLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVH 544
+F + L G E+ L F + +K+++ K TI E + S +VM+ KR
Sbjct: 525 LFWSQLGGEEMQRLKFVDGIKSYKSKATIFEINSTSKTSAS---------EVMRAKRNHD 575
Query: 545 EKII---NLVHQQRSSKSM--------------EKEVEPEADSLMAK----EIKETHGS- 582
K+I + ++++S ++ E+ +E ++ K + E GS
Sbjct: 576 GKLIAKFQRLQEEKTSATVTSGISGLCCKQESDEENIEGVFSQVIGKRKMTDKDEAEGSK 635
Query: 583 KRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEA-AVLDLVADDSGGLQKQK 641
KRK +D Y+I P + E GLS+ G + A AV+DL+ D + L+K K
Sbjct: 636 KRKGGASQDSNYYIPYRPKDFESERGLSI---GGSSFEQAAAGAVMDLLGDHTEDLKKNK 692
Query: 642 QVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKG 700
QV WD++ KK++ E K +KTESG + ++ K +Y+ WK++ K
Sbjct: 693 QVLKWDRKKKKFVGTGGQE----DKKKIKTESGRLISSSYKKNLYEGWKKK------YKI 742
Query: 701 ASNEGNAEETTS-VPGGRHLGGNNRKFRGGKNQQRSVPNAHVCSEIKDLDQVRKERQKKA 759
+ EET GR G R + N Q S P SE++ Q+ K R+ ++
Sbjct: 743 DDQDSEEEETNQRTAAGRRKGRGGRGSQRHSNSQSSGPQGKAKSELRSKQQILKMRKAQS 802
Query: 760 DRIAFMKGKTQKGK 773
+ KG +K K
Sbjct: 803 KQNFLQKGGLKKMK 816
>gi|442750425|gb|JAA67372.1| Putative atp-dependent rna helicase [Ixodes ricinus]
Length = 767
Score = 595 bits (1535), Expect = e-167, Method: Compositional matrix adjust.
Identities = 346/805 (42%), Positives = 491/805 (60%), Gaps = 85/805 (10%)
Query: 19 KSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78
K KSGGF+S+ LSP + + + ++GY++PTPIQRKT+P+IL G D+VAMARTGSGKTAAFL
Sbjct: 10 KKKSGGFQSMGLSPPILKGVLKRGYQIPTPIQRKTIPVILEGRDMVAMARTGSGKTAAFL 69
Query: 79 VPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138
VP+L +L Q G RAL+LSPTR+LALQT KF KELG++TDL+ ++++GGD+ME QFE
Sbjct: 70 VPILDKLKARSLQAGARALVLSPTRELALQTHKFAKELGKFTDLKSTVILGGDNMEDQFE 129
Query: 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198
+ +NPD++IATPGR +H + E+ D+ L S++YVVFDEAD LF MGF EQL++IL +L E
Sbjct: 130 AIHENPDVLIATPGRFLHIVMEM-DLKLSSIKYVVFDEADRLFEMGFQEQLNEILHRLPE 188
Query: 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258
NRQTLLFSATLP L +FA+AGL +P LVRLDV++++S LK + R +K A LL++
Sbjct: 189 NRQTLLFSATLPRMLVDFARAGLNEPVLVRLDVESQLSDLLKTVYLMCRTNDKAAILLHL 248
Query: 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
++ + D+ TL+FV+T+HH E+L + + + Y +DQ ARKI+VS+ RAR+
Sbjct: 249 LKHVVKPDELTLVFVATRHHAEYLRDILERADVPCTQVYSSLDQAARKINVSKLRARQVP 308
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
++VTDVAARGIDIPLLDNVIN FPPK K+FVHRVGR ARAGR+GTA+S V ++ YL
Sbjct: 309 VMLVTDVAARGIDIPLLDNVINHSFPPKAKLFVHRVGRVARAGRSGTAYSLVAPDEAPYL 368
Query: 379 LDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREI 438
LDLHLFL +P++ A S QA +G + G+ PQ VID ++ +R +
Sbjct: 369 LDLHLFLGRPMQFA--------------SAASQAPESG--LCGKVPQMVIDEEAEMLRVL 412
Query: 439 IDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGL--HPMFKNVLEGGELM 496
+ ++DL ++R C+NA Y K++P PS ES +R K +E + HP+F+ E +
Sbjct: 413 HEQNSDLXXMERVCSNAMIQYLKSRPPPSSESAKRMKQFLKEDIAPHPVFR-AKSADEDV 471
Query: 497 ALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRS 556
+ + +K F+P TI E G +S VMKKKR H+K+I + Q +
Sbjct: 472 RASLLQGMKRFKPPSTIFEI-GNTGKSDAF--------SVMKKKRQKHDKLIERISSQAA 522
Query: 557 SKSMEK-----EVEPEADSLMAKE----------IKETHGSKRKAK-------------- 587
SKS E + E +++MA+E I G KRK +
Sbjct: 523 SKSQENSSPAPKTEGSQEAVMAEEEDIESAFATVIGSRKGQKRKKRGENSGSEASPEKKK 582
Query: 588 -----TFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQ 642
+FKDEE++I ++ H E GL + ++ F + AVLDL ADD L+KQK
Sbjct: 583 KARPDSFKDEEFYIPHFSSDFHSEKGLEL--EKTFE-QQASQAVLDLTADDEKMLRKQKS 639
Query: 643 VYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGA 701
WD++ K++++ N + K ++TESGA + A+ K+ +YK+WK +S
Sbjct: 640 TMKWDRKKKRFVREGNDD---PKKKKIRTESGAWIPASYKSDVYKQWKRKSQVDARDDDD 696
Query: 702 SNEGNAEETTSVPGGRHLGGNNRKFRGGKNQQRSVPNAHVCSEIKDLDQVRKERQKKADR 761
+ G + V LG +K RGG Q+ P E+K D++ K RQ+KA R
Sbjct: 697 EDSGGLGK-QKVAACDRLG---KKHRGGAKQKG--PRKQFRRELKTKDEILKARQRKA-R 749
Query: 762 IAFMKGKTQKGKKFSKNGKRGKPRK 786
+ F K K+G+R K RK
Sbjct: 750 LNFHVKK--------KHGERSKRRK 766
>gi|325180097|emb|CCA14499.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
Length = 836
Score = 595 bits (1534), Expect = e-167, Method: Compositional matrix adjust.
Identities = 337/844 (39%), Positives = 490/844 (58%), Gaps = 130/844 (15%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L LS V+RA+ GYKVPTPIQRK++PLILSG DVV MARTGSGK+AAFL+P++++
Sbjct: 28 FQHLGLSNPVYRAVMAMGYKVPTPIQRKSLPLILSGKDVVGMARTGSGKSAAFLIPLIEK 87
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L +H + G+R L+L+PTR+LALQTL+FTK L +YT LR+SL+VGG+ ME QF LA NP
Sbjct: 88 LKEHSTRVGLRGLVLAPTRELALQTLQFTKGLAKYTSLRVSLIVGGEGMEQQFSALASNP 147
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
DI++ATPGRLMHHL E+ D +LKSVEYVVFDEAD LF MGFA+QLH+IL Q+ NRQTLL
Sbjct: 148 DILVATPGRLMHHLQEIPDFNLKSVEYVVFDEADRLFEMGFADQLHEILSQMPPNRQTLL 207
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSATLPS LA+FA+AGL +P ++RLDV+ K+S +LK+AFFT+R ++K A ++++R+ +
Sbjct: 208 FSATLPSVLAQFARAGLNEPAMIRLDVENKMSENLKMAFFTVRSDDKPAVFVHLVRDFLP 267
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
+ QT+IF +T+HHVEFL+ L +E S YG+MDQ +RK+++++FRA KT L+VTD
Sbjct: 268 KNDQTIIFTATRHHVEFLHQLLIANDIESSCVYGEMDQTSRKLNIAKFRAGKTNLLLVTD 327
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
VAARGIDIPLL+NVIN+ FPP K+FVHRVGRAARAG++GTAFS + + +L+DLHL+
Sbjct: 328 VAARGIDIPLLNNVINYSFPPTAKLFVHRVGRAARAGKSGTAFSLLDPTEYPFLVDLHLY 387
Query: 385 L------SKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETI-YGRFPQTVIDLVSDRVRE 437
+ S P+ + P E + E I YG FP + D ++++++
Sbjct: 388 IGRRLEDSSPVNSKPYALEEM---------------QVENIHYGAFPSEITDRENEQIQD 432
Query: 438 IIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFK------NVLE 491
++ ++ L + C NA +LY +T+ PSK SI+R K L + HP+FK + +
Sbjct: 433 LLKHHPVVSPLVKVCANASKLYQRTRADPSKLSIKRAKGLQIQ-CHPLFKKEFVDHDTAQ 491
Query: 492 GGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLV 551
E +A R++ FRP QTI E A + ++ + VM KR H KII
Sbjct: 492 KAECLA-----RIQTFRPVQTIFEVASSRAVPGTKKATTTSAMSVMATKRNAHFKII--- 543
Query: 552 HQQRSSKSM-------------------------------------------------EK 562
++ +S+S+ E
Sbjct: 544 -EKNASRSLEVAQVKIPMEQNTIPKCIPARVEDETEHKKGRFLSKHSRKLLRKRVAAGEN 602
Query: 563 EVEPEADSLMAKEIKETHGSKRKAKT--------FKDEEYFISSVPTNHHMEAG--LSVR 612
EV+ D L A+ +++ +T +KDE+ +I+ T + G
Sbjct: 603 EVDVVEDLLTAQSMRKEPSLNNLDRTRQAQDKPEYKDEDNYINVAKTKRELMDGSFFDQV 662
Query: 613 SDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKV---- 668
DQ NRL+A+ LDL DD+ + ++++++HWD R KKY++ + V+ G +
Sbjct: 663 DDQNAFSNRLDASTLDLNPDDALQMSRKRRIFHWDTRKKKYVR-TMAQDVTKQGTIRKKP 721
Query: 669 -----VKTESGAKVKATKTG---IYKKWKERSHKKVYLKGASNEGNAEETTSVPGGRHLG 720
++TESG K+KA K +YKKW+++ H+ + +E G
Sbjct: 722 PAQEYIRTESGIKIKAKKQQWGELYKKWQQKQHRSIRSGLEEDE---------------G 766
Query: 721 GNNRKFRGGKNQQRSVPNAHVCSEIKDLDQVRKERQKKADRIAFMKGKTQKGKKFSKNGK 780
N +R + +Q+ V + E++ +RKE +KA + K K G
Sbjct: 767 AGNIDYRHKRAKQKGVKD-----ELQSEQMIRKEHARKARSQKNYNAEKFVHKPRKKGGS 821
Query: 781 RGKP 784
G P
Sbjct: 822 HGAP 825
>gi|156396703|ref|XP_001637532.1| predicted protein [Nematostella vectensis]
gi|156224645|gb|EDO45469.1| predicted protein [Nematostella vectensis]
Length = 700
Score = 593 bits (1529), Expect = e-166, Method: Compositional matrix adjust.
Identities = 334/709 (47%), Positives = 451/709 (63%), Gaps = 85/709 (11%)
Query: 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPM 81
SGGF+SL LS VF+ + +KGYKVPTPIQRKT+PL++ G DVVAMARTGSGKTAAFL+PM
Sbjct: 18 SGGFQSLGLSFPVFKGVMKKGYKVPTPIQRKTLPLVMDGKDVVAMARTGSGKTAAFLIPM 77
Query: 82 LQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
++L H + G+RALILSPTR+LALQT KF KELGR+T L+ S+++GGDS+E QF +
Sbjct: 78 FEKLQTHTAKVGIRALILSPTRELALQTQKFIKELGRFTGLKSSVILGGDSLEGQFAAIH 137
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
NPDI++ATPGR +H + E+E + L SVEYVVFDEAD LF MGFAEQLH+I+ +L E+RQ
Sbjct: 138 TNPDIVVATPGRFLHVVMEME-LKLSSVEYVVFDEADRLFEMGFAEQLHEIIHRLPESRQ 196
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
TLLFSATLP L +FAKAGL DP LVRLDVDTK+S LK++ + E + AL+++++
Sbjct: 197 TLLFSATLPRLLVDFAKAGLCDPALVRLDVDTKLSEQLKVSDYVFSL-ELYTALMHLLQN 255
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
I +QTLIF +TKHHVE+L + G++ S Y +DQ AR I+V +F+ +KTM ++
Sbjct: 256 VIKPTEQTLIFAATKHHVEYLKEMLLSGGIDCSYVYSSLDQTARTINVGKFQHKKTMVMV 315
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
VTDVAARGIDIP+LDNVIN+ FPPK K+FVHRVGR ARAGR+GTA+S V ++++A+LLDL
Sbjct: 316 VTDVAARGIDIPMLDNVINFHFPPKAKLFVHRVGRVARAGRSGTAYSLVANDEVAHLLDL 375
Query: 382 HLFLSKPIR--AAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREII 439
HLFL +P+R A S+EE DGV +G PQ V+D +R I
Sbjct: 376 HLFLGRPLRLSATGSQEE-----DGV--------------FGGMPQQVLDEEDATLRTIH 416
Query: 440 DSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGL--HPMFKNVLEGGELMA 497
D+S DL +LQ C NA++ Y +++P S ES++R K+L L HP+ G E+
Sbjct: 417 DNSHDLMTLQGVCANAYKQYIRSRPQASSESVKRSKELMATPLAVHPLL-----GSEVTD 471
Query: 498 LAFSE---RLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVH-- 552
+ S+ ++ F+P+QTI E + S DVMK KRA H I VH
Sbjct: 472 VPLSQLIDSVRNFKPRQTIFEVNPTSKTSAR---------DVMKSKRAQHGNTIEKVHSL 522
Query: 553 -QQRSSKSMEKEVEPEADS----------LMAKEIKETHGSKRKAK-------------T 588
QQ+ + PE ++ L A I + KRK K T
Sbjct: 523 KQQQQPYIEKTHTSPEGENVDMDDADVKGLFATIIDPSENKKRKPKRNGMLMYSRHLRST 582
Query: 589 FKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLE----AAVLDLVADDSGGLQKQKQVY 644
+ E +IS ++H+ E GL G GLN E AV+D+V DD L+K+K +
Sbjct: 583 IVNYENYISHTSSDHYAERGL------GLGLNSFEKEATGAVIDIVGDDDETLRKKKGLK 636
Query: 645 HWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERS 692
WD++ K+++ GE + K ++TESGA++ A+ K IYK W +R+
Sbjct: 637 KWDRKRKRFV----GEE--GNKKKIRTESGARIPASYKRNIYKDWVKRN 679
>gi|27545287|ref|NP_775375.1| ATP-dependent RNA helicase DDX54 [Danio rerio]
gi|20977591|gb|AAM28223.1| ATP-dependent RNA helicase [Danio rerio]
Length = 862
Score = 593 bits (1529), Expect = e-166, Method: Compositional matrix adjust.
Identities = 352/834 (42%), Positives = 492/834 (58%), Gaps = 99/834 (11%)
Query: 6 SKAELKRRE----KQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGA 61
S EL RE + KKK KSGGF+S+ LS V++ I +KGYKVPTPIQRKT+P+IL G
Sbjct: 57 SDVELDTRELVRAQNKKKKKSGGFQSMGLSYPVYKGIMKKGYKVPTPIQRKTIPVILDGK 116
Query: 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121
DVVAMARTGSGKTAAFLVP+ ++L Q G RALIL+PTR+LALQT+KFTKELG++T
Sbjct: 117 DVVAMARTGSGKTAAFLVPLFEKLKAPQAQTGARALILTPTRELALQTMKFTKELGKFTG 176
Query: 122 LRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181
LR +L++GGDSM+ QF L +NPDIII TPGRLMH + E+ ++ L+SVEYVVFDEAD LF
Sbjct: 177 LRTALILGGDSMDDQFAALHENPDIIIGTPGRLMHVIQEM-NLKLQSVEYVVFDEADRLF 235
Query: 182 GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKL 241
MGFAEQL +I+ +L + RQTLLFSATLP + EFA+AGL +P L+RLDVDTK+S LKL
Sbjct: 236 EMGFAEQLQEIIRRLPDARQTLLFSATLPKLIVEFARAGLTEPVLIRLDVDTKLSEQLKL 295
Query: 242 AFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMD 301
+FF+LR ++K A LL+++R + +QT++FV+TKHHVE+L L EG++ S Y +D
Sbjct: 296 SFFSLRLDDKPALLLHLLRNVVKPQEQTVVFVATKHHVEYLKELLSAEGVDCSCIYSALD 355
Query: 302 QDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAG 361
Q ARKI + RF RK M L+VTDVAARGIDIPLLDNVIN++FP KPK+F+HRVGR ARAG
Sbjct: 356 QTARKISIGRFVHRKVMLLLVTDVAARGIDIPLLDNVINYNFPCKPKLFLHRVGRVARAG 415
Query: 362 RTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYG 421
R GTA+S V +++ YL DLHLFL +P++ A E + DGV +G
Sbjct: 416 RGGTAYSLVCPDEVPYLYDLHLFLGRPMQLAHPEHTQ--EADGV--------------FG 459
Query: 422 RFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKD--LPR 479
R PQ+V+D ++ +S DL +L+R NA++ Y K++P+PS ESI+R ++ L
Sbjct: 460 RVPQSVLDDEECQLITAHQNSLDLQNLRRVSENAYKQYLKSRPVPSAESIKRSRNTQLTD 519
Query: 480 EGLHPMFKNVLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKK 539
+HP+ LE EL L + +K ++ K TI E S +VM+
Sbjct: 520 MAVHPLLGCGLEKMELDRLLMVDTIKGYKAKSTIFEINSSNKTSAS---------EVMRA 570
Query: 540 KRAVHEKIINLVHQQRSSKSMEK----EVEPEAD--------------SLMAKEI----- 576
KR+ + + + R+ E EP S + E+
Sbjct: 571 KRSRDRQRVEKFSRARAELRAEPGAGLRAEPPVHRETQEEDEEEQEELSTVFSEVVGGKR 630
Query: 577 ------KETHGSKRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLV 630
TH SK+ +D+E++I P + + E GLS+ S G + +AVLDL+
Sbjct: 631 RRPDAEPHTHKSKKSRTAGRDQEFYIPYRPKDFNSERGLSLDSGAGSFEQQASSAVLDLI 690
Query: 631 ADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKA--TKTGIYKKW 688
D+S L + K + WD++ K++++ E K ++TESG ++ K Y++W
Sbjct: 691 GDESNTLNQHKSLMKWDRKKKRFVRDTGKE---DKHKKIRTESGQLIRGHKKKKSFYEEW 747
Query: 689 KERSHKKVYLKGASNEGNAEETTSVPGGRHLGGNNRKFRGGKNQQRSVPNAH-----VCS 743
K KK ++G +++ + E + G G R ++ P H V S
Sbjct: 748 K----KKYKVEGGASDSDGEGGGAQRGRGSAGRRGRGRGRSAAGSQATPAQHQGGSGVRS 803
Query: 744 EIKDLDQVRKERQKKAD------------------------RIAFMKGKTQKGK 773
E+K+ Q+ K+R++KA + F +G +KGK
Sbjct: 804 ELKNRQQILKQRKRKAKQQFLQSGGMKKLRNKGKQRLREVMKSGFGRGAVKKGK 857
>gi|428163077|gb|EKX32169.1| hypothetical protein GUITHDRAFT_121663 [Guillardia theta CCMP2712]
Length = 914
Score = 592 bits (1527), Expect = e-166, Method: Compositional matrix adjust.
Identities = 334/761 (43%), Positives = 474/761 (62%), Gaps = 71/761 (9%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FES+ S V+R IK KGYKVPTPIQRKT+PL+L G D+VAMARTGSGKTAAFL+PM +R
Sbjct: 152 FESMGFSYPVYRGIKMKGYKVPTPIQRKTIPLVLRGHDLVAMARTGSGKTAAFLLPMFER 211
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L +H + G+RALILSPTR+LALQTLKF KELG+YT LR++LLVGGDSME QF LA NP
Sbjct: 212 LKEHSVKVGIRALILSPTRELALQTLKFGKELGKYTGLRMALLVGGDSMEDQFAALAHNP 271
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
D++IATPGRL+HHL EV ++L+SV+Y+VFDE D LF MGFA +L I+ ++S+NRQTLL
Sbjct: 272 DVVIATPGRLLHHLEEV-GLTLQSVQYIVFDECDRLFEMGFAAELRAIMKKVSDNRQTLL 330
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSATLP+ALAEFA+AGL+DP LVRLDV+TK+S L++AF +R EE+ AALLY+
Sbjct: 331 FSATLPAALAEFARAGLKDPELVRLDVETKVSDQLRMAFLCVRAEERDAALLYL------ 384
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
HHVE+++ L G+E + YG MD ARKI + RFRA+ + +LIVTD
Sbjct: 385 ------------HHVEYVHALLASVGIEACMLYGAMDPAARKIAIGRFRAKLSQYLIVTD 432
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
VAARG+DIPLL+NVIN +FP K K+FVHRVGRAARAGR+GTA+S V ED+A ++DLHLF
Sbjct: 433 VAARGVDIPLLENVINHNFPGKAKLFVHRVGRAARAGRSGTAYSLVGPEDVALMIDLHLF 492
Query: 385 LSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSAD 444
L +P++ + EE + E YGR PQ+++D + V+ ++ ++D
Sbjct: 493 LGRPLQTSDQSEEE---------------NSFEAFYGRMPQSLLDESQEIVQRLLHDNSD 537
Query: 445 LNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVLEGGELMALA--FSE 502
L + A LY KT PS +SIRR K++ + +HP F + ++ E+ F +
Sbjct: 538 LAAALAVAQRALGLYKKTMEKPSSQSIRRAKEMDEDAIHPWFLSDVDACEVAGQGRQFLK 597
Query: 503 RLKAFRPKQTILEAEG-----EAARSKHLQGPSSQWVDVMKKKR-------AVHEKIINL 550
L+ FRP+Q++LE A+ S+ ++ S V+ ++ + + + +
Sbjct: 598 ALQHFRPQQSVLEVHDGTKKVAASVSQQMRAQFSSAVEARRRAQQYLSMTEQIKQDLSEE 657
Query: 551 VHQQRSSKSME-----KEVEPEADSLMAKEIKETHGSKRKAKTFKDEEYFISSVPTNHHM 605
+ + RS +E K P A S K+ K + + +AK E + ++ + +
Sbjct: 658 LVESRSPPPLEDHASQKRERPRALSSEPKK-KRSRSAMEEAKRRDMESFRLAGEKADANT 716
Query: 606 EAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSAS 665
E GL++R L +E + ++ D+ G L K++ V WD R KK++K + +
Sbjct: 717 EKGLTIREAAKDRLQSIEQMIFEMDPDEEGTLLKKRAVLRWDSRKKKFVKDFDRTQDKTD 776
Query: 666 GKVVKTESGAKV-KATKTGIYKKWKERSHKKVYLKGASNEGNAEETTSVPGGRHLGGNNR 724
GK E+G K+ K + G+Y KWKERS ++ L+G + + + S+P R +R
Sbjct: 777 GKARMNEAGKKIKKGYRLGLYDKWKERSKARIQLEGEEEDSSVHQ--SLPDFR-----SR 829
Query: 725 KFRGGKNQ-----QRSVPNAHVCSEIKDLDQVRKERQKKAD 760
+FR K + ++ P E+K DQ+RKER+KK +
Sbjct: 830 RFRHNKGEAAAGGEKRGPR----DELKSKDQIRKEREKKQN 866
>gi|301609527|ref|XP_002934380.1| PREDICTED: ATP-dependent RNA helicase DDX54 [Xenopus (Silurana)
tropicalis]
Length = 847
Score = 592 bits (1526), Expect = e-166, Method: Compositional matrix adjust.
Identities = 338/719 (47%), Positives = 462/719 (64%), Gaps = 62/719 (8%)
Query: 5 SSKAELKRRE----KQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSG 60
+S EL RE + KKK KSGGF+S+ LS VF+ + +KGYKVPTPIQRK +P+IL G
Sbjct: 51 TSDTELDTREMVRAQNKKKKKSGGFQSMGLSYPVFKGVMKKGYKVPTPIQRKVIPVILDG 110
Query: 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120
DVVAMARTGSGKTA FL+PM ++L H Q GVR LILSPTR+LALQTLKFTKELG++T
Sbjct: 111 KDVVAMARTGSGKTACFLIPMFEKLKAHSAQTGVRGLILSPTRELALQTLKFTKELGKFT 170
Query: 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL 180
L+ +L++GGD ME QF L +NPDIIIATPGRLMH E+ ++ L++VEYVVFDEAD L
Sbjct: 171 GLKTALILGGDKMEDQFAALHENPDIIIATPGRLMHVAIEM-NLKLRTVEYVVFDEADRL 229
Query: 181 FGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLK 240
F MGFAEQL +I+ +L E RQTLLFSATLP L EFA+AGL +P L+RLDVDTK+S LK
Sbjct: 230 FEMGFAEQLQEIISRLPETRQTLLFSATLPKMLLEFARAGLTEPVLIRLDVDTKLSDQLK 289
Query: 241 LAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDM 300
L+FF +R E+K A LL+++R + +QT+IFV+TKHH E+L L +G+ S Y +
Sbjct: 290 LSFFNVRVEDKPAVLLHLLRCVVKPQEQTVIFVATKHHAEYLRELLDMQGIPCSHIYSAL 349
Query: 301 DQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARA 360
DQ ARKI++ F K L+VTDVAARGIDIP+LDNVIN++FPPK K+F+HRVGR ARA
Sbjct: 350 DQTARKINLGLFLHGKVRALLVTDVAARGIDIPMLDNVINYNFPPKAKLFLHRVGRVARA 409
Query: 361 GRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSE-EEVLLDMDGVMSKIDQAIANGETI 419
GR+GTA+S + +++ Y+ DLHLFL +P++ A ++ E D DGV+
Sbjct: 410 GRSGTAYSLIAPDEIPYVYDLHLFLGRPLKLATAQMMETGADTDGVL------------- 456
Query: 420 YGRFPQTVID-----LVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRG 474
GR PQ++ID L++DR R S +L +L NA++ Y K++P PS ESI+R
Sbjct: 457 -GRVPQSLIDDEDALLITDRER-----SLELQNLHNVAENAYKQYIKSRPTPSPESIKRV 510
Query: 475 KDLPRE--GLHPMFKNVLEGGELMALAFSERLKAFRPKQTILE--AEGEAARSKHLQGPS 530
KD G+HP+F + L E+ L F + +K+++ K TI E A + S+ ++
Sbjct: 511 KDANYNLLGVHPLFWSQLGEEEMQRLKFVDGIKSYKSKATIFEINATNKTNASEVMRAKR 570
Query: 531 SQWVDVMKKKRAVHEK---IINLVHQQRSSKSMEKEVEPE------ADSLMAKEIK---E 578
S V+ K + + E+ + + SS S ++E + E + L ++I E
Sbjct: 571 SHDGKVIAKFQRLQEEKSATVQTLTSGISSLSCKQESDEENMEGVFSQVLGKRKITDKDE 630
Query: 579 THGS-KRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLE----AAVLDLVADD 633
G+ KRKA T D +Y+I P + E GLS+ G + E AVLDL+ D
Sbjct: 631 AEGNKKRKAGTSHDTDYYIPYRPKDFESERGLSI------GASSFEQAAAGAVLDLLGDQ 684
Query: 634 SGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKER 691
+ L+K KQV WD++ KK++ E K +KTESG + ++ K +Y+ WK++
Sbjct: 685 TEDLRKNKQVMKWDRKKKKFVGTGGPE----DKKKIKTESGRLISSSYKKNLYEGWKKK 739
>gi|344257761|gb|EGW13865.1| ATP-dependent RNA helicase DDX54 [Cricetulus griseus]
Length = 861
Score = 591 bits (1523), Expect = e-166, Method: Compositional matrix adjust.
Identities = 338/778 (43%), Positives = 480/778 (61%), Gaps = 64/778 (8%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
R + KKK KSGGF+S+ LS VF+ I +KGYKVPTPIQRKT+P+IL G DVVAMARTGSG
Sbjct: 69 RAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSG 128
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTA FL+PM +RL Q G RALILSPTR+LALQT+KFTKELG++T L+ +L++GGD
Sbjct: 129 KTACFLLPMFERLKARSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDK 188
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
ME QF L +NPDIIIATPGRLMH E+ ++ L+SVEYVVFDEAD LF MGFAEQL +I
Sbjct: 189 MEDQFAALHENPDIIIATPGRLMHVAVEM-NLKLQSVEYVVFDEADRLFEMGFAEQLQEI 247
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
+G+L QT+LFSATLP L EFA+AGL +P L+RLDVDTK++ LK +F +R++ K
Sbjct: 248 IGRLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSFLLVREDTKA 307
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
A LLY++R + QT++FV+TKHH E+L L +G+ + Y +DQ ARKI++++F
Sbjct: 308 AVLLYLLRNVVRPQDQTVVFVATKHHAEYLMELLTAQGVSCAHIYSALDQTARKINLAKF 367
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
K LIVTD+AARG+DIPLLDNVIN+ FP K K+F+HRVGR ARAGR+GTA+S V
Sbjct: 368 THNKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAP 427
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEEEV--LLDMDGVMSKIDQAIANGETIYGRFPQTVIDL 430
+++ YLLDLHLFL + I A EE + DGV+ GR PQTV+D
Sbjct: 428 DEVPYLLDLHLFLGRSITLAQPHEEPSGAVGRDGVL--------------GRVPQTVVDD 473
Query: 431 VSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK--DLPREGLHPMFKN 488
++ +++S DL L R NA + Y +++P PS ESI+R K DL GLHP+F +
Sbjct: 474 EDSGLQTALEASLDLRGLHRVADNAQQQYVRSRPAPSPESIKRAKELDLAGLGLHPLFSS 533
Query: 489 VLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKII 548
E GE L + +K++R + TI E + PSSQ +M+ KR +K I
Sbjct: 534 RFEEGERQRLRLLDSVKSYRTRTTIFEINASC------RDPSSQ---MMRAKRQRDQKAI 584
Query: 549 NLVHQQRSSKSMEKEVEP----------EADSLMAKEIKE---------------THGSK 583
+ Q R + E +P E + MA+ +++ G+K
Sbjct: 585 DSFQQGRQERQ-ESPADPVPQKELPQKEEGEEDMAESVEDVFTEVVGQKRSKPGPNRGAK 643
Query: 584 RKAKTF--KDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQK 641
R+ + +D+E+++ P + E GLS+ G ++ AVLDL+ D++ + + +
Sbjct: 644 RRREEARQRDQEFYVPYRPKDFDSERGLSIGGTAGAFEQQVAGAVLDLMGDEAQNMSRGR 703
Query: 642 QVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKG 700
Q WD++ K+++ G+ K +KTESG + ++ K +Y+KWK++ +K+ +
Sbjct: 704 QQLKWDRKKKRFV----GQSGQEDKKKIKTESGRYISSSYKRDLYQKWKQK--QKIDDRD 757
Query: 701 ASNEGNAEETTSVPGGRHLGGNNRKFRGGK-NQQRSVPNAHVCSEIKDLDQVRKERQK 757
+ +EG+ + P G ++ +G + S P + SE+K +Q+ K R++
Sbjct: 758 SEDEGSFNQRGPGPRRGGKRGRSQGGQGASLPRAPSAPTGRMRSELKTKEQILKHRRQ 815
>gi|354497513|ref|XP_003510864.1| PREDICTED: ATP-dependent RNA helicase DDX54 isoform 2 [Cricetulus
griseus]
Length = 875
Score = 591 bits (1523), Expect = e-166, Method: Compositional matrix adjust.
Identities = 338/777 (43%), Positives = 480/777 (61%), Gaps = 64/777 (8%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
R + KKK KSGGF+S+ LS VF+ I +KGYKVPTPIQRKT+P+IL G DVVAMARTGSG
Sbjct: 85 RAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSG 144
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTA FL+PM +RL Q G RALILSPTR+LALQT+KFTKELG++T L+ +L++GGD
Sbjct: 145 KTACFLLPMFERLKARSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDK 204
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
ME QF L +NPDIIIATPGRLMH E+ ++ L+SVEYVVFDEAD LF MGFAEQL +I
Sbjct: 205 MEDQFAALHENPDIIIATPGRLMHVAVEM-NLKLQSVEYVVFDEADRLFEMGFAEQLQEI 263
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
+G+L QT+LFSATLP L EFA+AGL +P L+RLDVDTK++ LK +F +R++ K
Sbjct: 264 IGRLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSFLLVREDTKA 323
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
A LLY++R + QT++FV+TKHH E+L L +G+ + Y +DQ ARKI++++F
Sbjct: 324 AVLLYLLRNVVRPQDQTVVFVATKHHAEYLMELLTAQGVSCAHIYSALDQTARKINLAKF 383
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
K LIVTD+AARG+DIPLLDNVIN+ FP K K+F+HRVGR ARAGR+GTA+S V
Sbjct: 384 THNKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAP 443
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEEEV--LLDMDGVMSKIDQAIANGETIYGRFPQTVIDL 430
+++ YLLDLHLFL + I A EE + DGV+ GR PQTV+D
Sbjct: 444 DEVPYLLDLHLFLGRSITLAQPHEEPSGAVGRDGVL--------------GRVPQTVVDD 489
Query: 431 VSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK--DLPREGLHPMFKN 488
++ +++S DL L R NA + Y +++P PS ESI+R K DL GLHP+F +
Sbjct: 490 EDSGLQTALEASLDLRGLHRVADNAQQQYVRSRPAPSPESIKRAKELDLAGLGLHPLFSS 549
Query: 489 VLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKII 548
E GE L + +K++R + TI E + PSSQ +M+ KR +K I
Sbjct: 550 RFEEGERQRLRLLDSVKSYRTRTTIFEINASC------RDPSSQ---MMRAKRQRDQKAI 600
Query: 549 NLVHQQRSSKSMEKEVEP----------EADSLMAKEIKE---------------THGSK 583
+ Q R + E +P E + MA+ +++ G+K
Sbjct: 601 DSFQQGRQERQ-ESPADPVPQKELPQKEEGEEDMAESVEDVFTEVVGQKRSKPGPNRGAK 659
Query: 584 RKAKTF--KDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQK 641
R+ + +D+E+++ P + E GLS+ G ++ AVLDL+ D++ + + +
Sbjct: 660 RRREEARQRDQEFYVPYRPKDFDSERGLSIGGTAGAFEQQVAGAVLDLMGDEAQNMSRGR 719
Query: 642 QVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKG 700
Q WD++ K+++ G+ K +KTESG + ++ K +Y+KWK++ +K+ +
Sbjct: 720 QQLKWDRKKKRFV----GQSGQEDKKKIKTESGRYISSSYKRDLYQKWKQK--QKIDDRD 773
Query: 701 ASNEGNAEETTSVPGGRHLGGNNRKFRGGKNQQRSVPNAHVCSEIKDLDQVRKERQK 757
+ +EG+ + P G ++ + G+ S P + SE+K +Q+ K R++
Sbjct: 774 SEDEGSFNQRGPGPRRGGKRGRSQGGQ-GRWYTPSAPTGRMRSELKTKEQILKHRRQ 829
>gi|354497511|ref|XP_003510863.1| PREDICTED: ATP-dependent RNA helicase DDX54 isoform 1 [Cricetulus
griseus]
Length = 876
Score = 590 bits (1522), Expect = e-166, Method: Compositional matrix adjust.
Identities = 325/724 (44%), Positives = 459/724 (63%), Gaps = 57/724 (7%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
R + KKK KSGGF+S+ LS VF+ I +KGYKVPTPIQRKT+P+IL G DVVAMARTGSG
Sbjct: 85 RAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSG 144
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTA FL+PM +RL Q G RALILSPTR+LALQT+KFTKELG++T L+ +L++GGD
Sbjct: 145 KTACFLLPMFERLKARSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDK 204
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
ME QF L +NPDIIIATPGRLMH E+ ++ L+SVEYVVFDEAD LF MGFAEQL +I
Sbjct: 205 MEDQFAALHENPDIIIATPGRLMHVAVEM-NLKLQSVEYVVFDEADRLFEMGFAEQLQEI 263
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
+G+L QT+LFSATLP L EFA+AGL +P L+RLDVDTK++ LK +F +R++ K
Sbjct: 264 IGRLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSFLLVREDTKA 323
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
A LLY++R + QT++FV+TKHH E+L L +G+ + Y +DQ ARKI++++F
Sbjct: 324 AVLLYLLRNVVRPQDQTVVFVATKHHAEYLMELLTAQGVSCAHIYSALDQTARKINLAKF 383
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
K LIVTD+AARG+DIPLLDNVIN+ FP K K+F+HRVGR ARAGR+GTA+S V
Sbjct: 384 THNKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAP 443
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVS 432
+++ YLLDLHLFL + I A EE + G + + + + GR PQTV+D
Sbjct: 444 DEVPYLLDLHLFLGRSITLAQPHEEP--SVAGAVGR--------DGVLGRVPQTVVDDED 493
Query: 433 DRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK--DLPREGLHPMFKNVL 490
++ +++S DL L R NA + Y +++P PS ESI+R K DL GLHP+F +
Sbjct: 494 SGLQTALEASLDLRGLHRVADNAQQQYVRSRPAPSPESIKRAKELDLAGLGLHPLFSSRF 553
Query: 491 EGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINL 550
E GE L + +K++R + TI E + PSSQ +M+ KR +K I+
Sbjct: 554 EEGERQRLRLLDSVKSYRTRTTIFEINASC------RDPSSQ---MMRAKRQRDQKAIDS 604
Query: 551 VHQQRSSKSMEKEVEP----------EADSLMAKEIKE---------------THGSKRK 585
Q R + E +P E + MA+ +++ G+KR+
Sbjct: 605 FQQGRQERQ-ESPADPVPQKELPQKEEGEEDMAESVEDVFTEVVGQKRSKPGPNRGAKRR 663
Query: 586 AKTF--KDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQV 643
+ +D+E+++ P + E GLS+ G ++ AVLDL+ D++ + + +Q
Sbjct: 664 REEARQRDQEFYVPYRPKDFDSERGLSIGGTAGAFEQQVAGAVLDLMGDEAQNMSRGRQQ 723
Query: 644 YHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGAS 702
WD++ K+++ G+ K +KTESG + ++ K +Y+KWK++ +K+ + +
Sbjct: 724 LKWDRKKKRFV----GQSGQEDKKKIKTESGRYISSSYKRDLYQKWKQK--QKIDDRDSE 777
Query: 703 NEGN 706
+EG+
Sbjct: 778 DEGS 781
>gi|28076989|ref|NP_082317.1| ATP-dependent RNA helicase DDX54 [Mus musculus]
gi|46576606|sp|Q8K4L0.1|DDX54_MOUSE RecName: Full=ATP-dependent RNA helicase DDX54; AltName: Full=DEAD
box protein 54
gi|21325958|gb|AAM47540.1|AF319547_1 ATP-dependent RNA-helicase [Mus musculus]
gi|55249609|gb|AAH43699.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 [Mus musculus]
Length = 874
Score = 589 bits (1519), Expect = e-165, Method: Compositional matrix adjust.
Identities = 338/789 (42%), Positives = 483/789 (61%), Gaps = 72/789 (9%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
R + KKK KSGGF+S+ LS VF+ I +KGYKVPTPIQRKT+P+IL G DVVAMARTGSG
Sbjct: 85 RAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSG 144
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTA FL+PM +RL Q G RALILSPTR+LALQT+KFTKELG++T L+ +L++GGD
Sbjct: 145 KTACFLLPMFERLKARSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDK 204
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
ME QF L +NPDIIIATPGRL+H E+ ++ L+SVEYVVFDEAD LF MGFAEQL +I
Sbjct: 205 MEDQFAALHENPDIIIATPGRLVHVAVEM-NLKLQSVEYVVFDEADRLFEMGFAEQLQEI 263
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
+G+L QT+LFSATLP L EFA+AGL +P L+RLDVD+K++ LK +F +R++ K
Sbjct: 264 IGRLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDSKLNEQLKTSFLLVREDTKA 323
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
A LLY+++ + QT++FV+TKHH E+L L +G+ + Y +DQ ARKI++++F
Sbjct: 324 AVLLYLLQNVVRPQDQTVVFVATKHHAEYLTELLMGQGVSCAHIYSALDQTARKINLAKF 383
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
K LIVTD+AARG+DIPLLDNVIN+ FP K K+F+HRVGR ARAGR+GTA+S V
Sbjct: 384 THNKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAP 443
Query: 373 EDMAYLLDLHLFLSKPIRAA-PSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLV 431
+++ YLLDLHLFL + + A P EE + D G + + GR PQ+V+D
Sbjct: 444 DEVPYLLDLHLFLGRSVTLARPCEEPSVADAVGR-----------DGVLGRVPQSVVDDE 492
Query: 432 SDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK--DLPREGLHPMFKNV 489
++ + +S DL L R NA + Y +++P PS ESI+R K DL GLHP+F +
Sbjct: 493 DSSLQTAMGASLDLQGLHRVANNAQQQYVRSRPAPSPESIKRAKELDLAELGLHPLFSSC 552
Query: 490 LEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIIN 549
E GEL L + +K +R + TI E + + PSSQ +M+ KR K +
Sbjct: 553 FEEGELQRLRLVDSIKNYRTRTTIFEINASS------KDPSSQ---MMRAKRQRDRKAVA 603
Query: 550 LVHQQRSSKSMEKEVEPEADSLMAKEIKE---------------------------THGS 582
Q+R + E AD +E+ + + G+
Sbjct: 604 SFQQRRQERQ-----EGPADPAPQRELPQEEEEEMVETVEGVFTEVVGQKRPRPGPSQGA 658
Query: 583 KRKAKTF--KDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQ 640
KR+ +D+E+++ P + E GLSV G ++ AVLDL+ D++ + +
Sbjct: 659 KRRRMETRQRDQEFYVPYRPKDFDSERGLSVSGAGGAFEQQVAGAVLDLMGDEAQNMSRG 718
Query: 641 KQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLK 699
+Q WD++ K+++ G+ K +KTESG + ++ K +Y+KWK++ +K+ +
Sbjct: 719 QQQLKWDRKKKRFV----GQSGQEDKKKIKTESGRFISSSYKRDLYQKWKQK--QKIDDR 772
Query: 700 GASNEGNAEETTSVPGGRHLGGNNRKFRGGKNQQR--SVPNAHVCSEIKDLDQVRKERQK 757
+ EG + + P G ++ G +Q R SVP + SE+K +Q+ K+R +
Sbjct: 773 DSEEEGPSNQRGPGPRRGGKRGRSQ----GTSQPRASSVPAGRMRSELKTKEQILKQR-R 827
Query: 758 KADRIAFMK 766
+A + F++
Sbjct: 828 QAQKQRFLQ 836
>gi|26327389|dbj|BAC27438.1| unnamed protein product [Mus musculus]
Length = 874
Score = 589 bits (1519), Expect = e-165, Method: Compositional matrix adjust.
Identities = 341/789 (43%), Positives = 484/789 (61%), Gaps = 72/789 (9%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
R + KKK KSGGF+S+ LS VF+ I +KGYKVPTPIQRKT+P+IL G DVVAMARTGSG
Sbjct: 85 RAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSG 144
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTA FL+PM +RL Q G RALILSPTR+LALQT+KFTKELG++T L+ +L++GGD
Sbjct: 145 KTACFLLPMFERLKARSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDK 204
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
ME QF L +NPDIIIATPGRL+H E+ ++ L+SVEYVVFDEAD LF MGFAEQL +I
Sbjct: 205 MEDQFAALHENPDIIIATPGRLVHVAVEM-NLKLQSVEYVVFDEADRLFEMGFAEQLQEI 263
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
+G+L QT+LFSATLP L EFA+AGL +P L+RLDVD+K++ LK +F +R++ K
Sbjct: 264 IGRLPGGHQTVLFSATLPKLLVEFAQAGLTEPVLIRLDVDSKLNEQLKTSFLLVREDTKA 323
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
A LLY+++ + QT++FV+TKHH E+L L +G+ + Y +DQ ARKI++++F
Sbjct: 324 AVLLYLLQNVVRPQDQTVVFVATKHHAEYLTELLMGQGVSCAHIYSALDQTARKINLAKF 383
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
K LIVTD+AARG+DIPLLDNVIN+ FP K K+F+HRVGR ARAGR+GTA+S V
Sbjct: 384 THNKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAP 443
Query: 373 EDMAYLLDLHLFLSKPIRAA-PSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLV 431
+++ YLLDLHLFL + + A P EE + D G + + GR PQ+V+D
Sbjct: 444 DEVPYLLDLHLFLGRSVTLARPCEEPSVADAVGR-----------DGVLGRVPQSVVDDE 492
Query: 432 SDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK--DLPREGLHPMFKNV 489
++ + +S DL L R NA + Y +++P PS ESI+R K DL GLHP+F +
Sbjct: 493 DSSLQTAMGASLDLQGLHRVANNAQQQYVRSRPAPSPESIKRAKELDLAELGLHPLFSSC 552
Query: 490 LEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIIN 549
E GEL L + +K +R + TI E A SK PSSQ +M+ KR K +
Sbjct: 553 FEEGELQRLRLVDSIKNYRTRTTIFEIN---ASSKD---PSSQ---MMRAKRQRDRKAVA 603
Query: 550 LVHQQRSSKSMEKEVEPEADSLMAKEIKE---------------------------THGS 582
Q+R + E AD +E+ + + G+
Sbjct: 604 SFQQRRQERQ-----EGPADPAPQRELPQEEEEEMVETVEGVFTEVVGQKRPRPGPSQGA 658
Query: 583 KRKAKTF--KDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQ 640
KR+ +D+E+++ P + E GLSV G ++ AVLDL+ D++ + +
Sbjct: 659 KRRRMETRQRDQEFYVPYRPKDFDSERGLSVSGAGGAFEQQVAGAVLDLMGDEAQNMSRG 718
Query: 641 KQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLK 699
+Q WD++ K+++ G+ K +KTESG + ++ K +Y+KWK++ +K+ +
Sbjct: 719 QQQLKWDRKKKRFV----GQSGQEDKKKIKTESGRFISSSYKRDLYQKWKQK--QKIDDR 772
Query: 700 GASNEGNAEETTSVPGGRHLGGNNRKFRGGKNQQR--SVPNAHVCSEIKDLDQVRKERQK 757
+ EG + + P G ++ G +Q R SVP + SE+K +Q+ K+R +
Sbjct: 773 DSEEEGPSNQRGPGPRRGGKRGRSQ----GTSQPRASSVPAGRMRSELKTKEQILKQR-R 827
Query: 758 KADRIAFMK 766
+A + F++
Sbjct: 828 QAQKQRFLQ 836
>gi|26327531|dbj|BAC27509.1| unnamed protein product [Mus musculus]
Length = 909
Score = 588 bits (1516), Expect = e-165, Method: Compositional matrix adjust.
Identities = 339/783 (43%), Positives = 481/783 (61%), Gaps = 71/783 (9%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
R + KKK KSGGF+S+ LS VF+ I +KGYKVPTPIQRKT+P+IL G DVVAMARTGSG
Sbjct: 85 RAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSG 144
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTA FL+PM +RL Q G RALILSPTR+LALQT+KFTKELG++T L+ +L++GGD
Sbjct: 145 KTACFLLPMFERLKARSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDK 204
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
ME QF L +NPDIIIATPGRL+H E+ ++ L+SVEYVVFDEAD LF MGFAEQL +I
Sbjct: 205 MEDQFAALHENPDIIIATPGRLVHVAVEM-NLKLQSVEYVVFDEADRLFEMGFAEQLQEI 263
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
+G+L QT+LFSATLP L EFA+AGL +P L+RLDVD+K++ LK +F +R++ K
Sbjct: 264 IGRLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDSKLNEQLKTSFLLVREDTKA 323
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
A LLY+++ + QT++FV+TKHH E+L L +G+ + Y +DQ ARKI++++F
Sbjct: 324 AVLLYLLQNVVRPQDQTVVFVATKHHAEYLTELLMGQGVSCAHIYSALDQTARKINLAKF 383
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
K LIVTD+AARG+DIPLLDNVIN+ FP K K+F+HRVGR ARAGR+GTA+S V
Sbjct: 384 THNKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAP 443
Query: 373 EDMAYLLDLHLFLSKPIRAA-PSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLV 431
+++ YLLDLHLFL + + A P EE + D G + + GR PQ+V+D
Sbjct: 444 DEVPYLLDLHLFLGRSVTLARPCEEPSVADAVGR-----------DGVLGRVPQSVVDDE 492
Query: 432 SDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK--DLPREGLHPMFKNV 489
++ + +S DL L R NA + Y +++P PS ESI+R K DL GLHP+F +
Sbjct: 493 DSSLQTAMGASLDLQGLHRVANNAQQQYVRSRPAPSPESIKRAKELDLAELGLHPLFSSC 552
Query: 490 LEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIIN 549
E GEL L + +K +R + TI E A SK PSSQ +M+ KR K +
Sbjct: 553 FEEGELQRLRLVDSIKNYRTRTTIFEIN---ASSKD---PSSQ---MMRAKRQRDRKAVA 603
Query: 550 LVHQQRSSKSMEKEVEPEADSLMAKEIKE---------------------------THGS 582
Q+R + E AD +E+ + + G+
Sbjct: 604 SFQQRRQERQ-----EGPADPAPQRELPQEEEEEMVETVEGVFTEVVGQKRPRPGPSQGA 658
Query: 583 KRKAKTF--KDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQ 640
KR+ +D+E+++ P + E GLSV G ++ AVLDL+ D++ + +
Sbjct: 659 KRRRMETRQRDQEFYVPYRPKDFDSERGLSVSGAGGAFEQQVAGAVLDLMGDEAQNMSRG 718
Query: 641 KQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLK 699
+Q WD++ K+++ G+ K +KTESG + ++ K +Y+KWK++ +K+ +
Sbjct: 719 QQQLKWDRKKKRFV----GQSGQEDKKKIKTESGRFISSSYKRDLYQKWKQK--QKIDDR 772
Query: 700 GASNEGNAEETTSVPGGRHLGGNNRKFRGGKNQQR--SVPNAHVCSEIKDLDQVRKERQK 757
+ EG + + P G ++ G +Q R SVP + SE+K +Q+ K+R++
Sbjct: 773 DSEEEGPSNQRGPGPRRGGKRGRSQ----GTSQPRASSVPAGRMRSELKTKEQILKQRRQ 828
Query: 758 KAD 760
++
Sbjct: 829 GSE 831
>gi|301779842|ref|XP_002925338.1| PREDICTED: ATP-dependent RNA helicase DDX54-like [Ailuropoda
melanoleuca]
Length = 863
Score = 587 bits (1513), Expect = e-165, Method: Compositional matrix adjust.
Identities = 340/788 (43%), Positives = 478/788 (60%), Gaps = 68/788 (8%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
R + KKK KSGGF+S+ LS VF+ I +KGYKVPTPIQRKT+P+IL G DVVAMARTGSG
Sbjct: 73 RAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSG 132
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTA FL+PM +RL Q G RAL+LSPTR+LALQT+KFTKELG++T LR +L++GGD
Sbjct: 133 KTACFLIPMFERLKTRSAQTGARALVLSPTRELALQTMKFTKELGKFTGLRTALILGGDK 192
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
ME QF L +NPDIIIATPGRL+H E+ ++ L+SVEYVVFDEAD LF MGFAEQL +I
Sbjct: 193 MEDQFAALHENPDIIIATPGRLVHVAVEM-NLRLQSVEYVVFDEADRLFEMGFAEQLQEI 251
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
+ +L QT+LFSATLP L EFA+AGL +P L+RLDVD K++ LK +FF +R++ K
Sbjct: 252 ISRLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDAKLNEQLKTSFFLVREDTKA 311
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
A LL+++R + QT++FV+TKHH E+L+ L +G+ + Y +DQ ARKI++++F
Sbjct: 312 AVLLHLLRTVVRPQDQTVVFVATKHHAEYLSELLTTQGVSCTHIYSALDQTARKINLAKF 371
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
K LIVTD+AARG+DIPLLDNVIN+ FP K K+F+HRVGR ARAGR+GTA+S V
Sbjct: 372 THGKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAP 431
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVS 432
+++ YLLDLHLFL + + AP E + + GR PQ+V+D
Sbjct: 432 DEVPYLLDLHLFLGRALTPAPPHEGS------------SGAGGADGVLGRVPQSVVDDEE 479
Query: 433 DRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK--DLPREGLHPMFKNVL 490
+R + + +L L R NA + Y +++P PS ESI+R K DL GLHP+F +
Sbjct: 480 GGLRSTLAAVLELRGLGRVADNAQQQYVRSRPAPSPESIKRAKELDLAGLGLHPLFSSRF 539
Query: 491 EGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINL 550
E EL L + +K++R + TI E A S+ L SSQ VM+ KR K I
Sbjct: 540 EEKELQRLKLVDSIKSYRSRATIFEIN---ASSRDL---SSQ---VMRAKRQKDRKAIAS 590
Query: 551 VHQQRSSKSME----------------KEVEPEADSLMAKEIKETHGSKRK--------- 585
Q R + + +E E A M E G KR+
Sbjct: 591 FQQGRQGRQEDTAGPAPGCPAPLEQKPQEEEEAAGESMEDVFTEVMGRKRQQLGPNQGAK 650
Query: 586 ----AKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQK 641
+D+E++I P + E GLS+ D G ++ AVLDL+ D++ L + +
Sbjct: 651 RRREEARRRDQEFYIPYRPKDFDSERGLSIGGDGGAFEQQVAGAVLDLMGDEAQNLTRGR 710
Query: 642 QVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKG 700
Q WD++ K+++ G+ K +KTESG + ++ K +Y+KWK++ +K+ +
Sbjct: 711 QQLKWDRKKKRFV----GQSGQEDKKKIKTESGRYISSSYKRDLYQKWKQK--QKIDDRD 764
Query: 701 ASNEGNAEETTSVPGGRHLGGNNRKFRGGKNQQRS--VPNAHVCSEIKDLDQVRKERQKK 758
+ +EG + + G GG + +G +Q R+ P V SE+K Q+ K+R ++
Sbjct: 765 SEDEGPSHQR----GPERRGGKWGRGQGA-SQPRTPGAPAGRVRSELKTKQQILKQR-RR 818
Query: 759 ADRIAFMK 766
A ++ F++
Sbjct: 819 AQKLRFLQ 826
>gi|281343478|gb|EFB19062.1| hypothetical protein PANDA_014817 [Ailuropoda melanoleuca]
Length = 819
Score = 586 bits (1511), Expect = e-164, Method: Compositional matrix adjust.
Identities = 340/788 (43%), Positives = 478/788 (60%), Gaps = 68/788 (8%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
R + KKK KSGGF+S+ LS VF+ I +KGYKVPTPIQRKT+P+IL G DVVAMARTGSG
Sbjct: 29 RAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSG 88
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTA FL+PM +RL Q G RAL+LSPTR+LALQT+KFTKELG++T LR +L++GGD
Sbjct: 89 KTACFLIPMFERLKTRSAQTGARALVLSPTRELALQTMKFTKELGKFTGLRTALILGGDK 148
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
ME QF L +NPDIIIATPGRL+H E+ ++ L+SVEYVVFDEAD LF MGFAEQL +I
Sbjct: 149 MEDQFAALHENPDIIIATPGRLVHVAVEM-NLRLQSVEYVVFDEADRLFEMGFAEQLQEI 207
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
+ +L QT+LFSATLP L EFA+AGL +P L+RLDVD K++ LK +FF +R++ K
Sbjct: 208 ISRLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDAKLNEQLKTSFFLVREDTKA 267
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
A LL+++R + QT++FV+TKHH E+L+ L +G+ + Y +DQ ARKI++++F
Sbjct: 268 AVLLHLLRTVVRPQDQTVVFVATKHHAEYLSELLTTQGVSCTHIYSALDQTARKINLAKF 327
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
K LIVTD+AARG+DIPLLDNVIN+ FP K K+F+HRVGR ARAGR+GTA+S V
Sbjct: 328 THGKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAP 387
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVS 432
+++ YLLDLHLFL + + AP E + + GR PQ+V+D
Sbjct: 388 DEVPYLLDLHLFLGRALTPAPPHEGS------------SGAGGADGVLGRVPQSVVDDEE 435
Query: 433 DRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK--DLPREGLHPMFKNVL 490
+R + + +L L R NA + Y +++P PS ESI+R K DL GLHP+F +
Sbjct: 436 GGLRSTLAAVLELRGLGRVADNAQQQYVRSRPAPSPESIKRAKELDLAGLGLHPLFSSRF 495
Query: 491 EGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINL 550
E EL L + +K++R + TI E A S+ L SSQ VM+ KR K I
Sbjct: 496 EEKELQRLKLVDSIKSYRSRATIFEIN---ASSRDL---SSQ---VMRAKRQKDRKAIAS 546
Query: 551 VHQQRSSKSME----------------KEVEPEADSLMAKEIKETHGSKRK--------- 585
Q R + + +E E A M E G KR+
Sbjct: 547 FQQGRQGRQEDTAGPAPGCPAPLEQKPQEEEEAAGESMEDVFTEVMGRKRQQLGPNQGAK 606
Query: 586 ----AKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQK 641
+D+E++I P + E GLS+ D G ++ AVLDL+ D++ L + +
Sbjct: 607 RRREEARRRDQEFYIPYRPKDFDSERGLSIGGDGGAFEQQVAGAVLDLMGDEAQNLTRGR 666
Query: 642 QVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKG 700
Q WD++ K+++ G+ K +KTESG + ++ K +Y+KWK++ +K+ +
Sbjct: 667 QQLKWDRKKKRFV----GQSGQEDKKKIKTESGRYISSSYKRDLYQKWKQK--QKIDDRD 720
Query: 701 ASNEGNAEETTSVPGGRHLGGNNRKFRGGKNQQRS--VPNAHVCSEIKDLDQVRKERQKK 758
+ +EG + + G GG + +G +Q R+ P V SE+K Q+ K+R ++
Sbjct: 721 SEDEGPSHQR----GPERRGGKWGRGQGA-SQPRTPGAPAGRVRSELKTKQQILKQR-RR 774
Query: 759 ADRIAFMK 766
A ++ F++
Sbjct: 775 AQKLRFLQ 782
>gi|327282682|ref|XP_003226071.1| PREDICTED: ATP-dependent RNA helicase DDX54-like [Anolis
carolinensis]
Length = 840
Score = 585 bits (1509), Expect = e-164, Method: Compositional matrix adjust.
Identities = 344/823 (41%), Positives = 485/823 (58%), Gaps = 102/823 (12%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
R + KKK KSGGF+S+ LS VF+ + +KGYK+PTPIQRKT+P+IL G DVVAMARTGSG
Sbjct: 53 RAQNKKKKKSGGFQSMGLSYPVFKGVMKKGYKIPTPIQRKTIPVILDGKDVVAMARTGSG 112
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTA FL+PM ++L H + G RALILSPTR+LALQTLKFTKELGR+ L+ +L++GGD
Sbjct: 113 KTACFLIPMFEKLKAHSAKTGARALILSPTRELALQTLKFTKELGRFAGLKTALILGGDK 172
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
ME QF L +NPDIIIATPGRLMH E++ + L SVEYVVFDEAD LF MGF+E L +I
Sbjct: 173 MEDQFAALHENPDIIIATPGRLMHVAVEMK-LKLHSVEYVVFDEADRLFEMGFSEHLKEI 231
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
+ +L E+RQT+LFSATLP L EFA+AGL +P L+RLDV++K+S LKL+F+ +R ++K
Sbjct: 232 ISRLPESRQTVLFSATLPKVLVEFARAGLTEPVLIRLDVESKLSEQLKLSFYHIRADDKP 291
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
A LLY++R + QT++FV+TKHH E+L L +G++ + Y +DQ ARKI++ +F
Sbjct: 292 ALLLYLLRTVVRPQDQTIVFVATKHHTEYLKELLTAQGVDCTHVYSSLDQTARKINIGKF 351
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
K LIVTD+AARGIDIPLLDNVIN+ FP KPK+F+HRVGR ARAGR+GTA+SFV
Sbjct: 352 THGKCSVLIVTDLAARGIDIPLLDNVINYSFPAKPKLFLHRVGRVARAGRSGTAYSFVAP 411
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVS 432
++ YL DLHLFL +P+ A S E D DG ++GR PQ++ID
Sbjct: 412 DETPYLFDLHLFLGRPLVLA-SPHEKPKDTDG--------------MFGRVPQSIIDDEE 456
Query: 433 DRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK--DLPREGLHPMFKNVL 490
++ + S +L SL++ NA + Y K++P PS ESI+R K D G+HP+F +
Sbjct: 457 SLLQTDHERSQELQSLRQVADNAQKQYQKSRPAPSSESIKRVKEMDFSLLGIHPLFSSRF 516
Query: 491 EGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINL 550
EG E+ L F + +K +R K TI E A K L DVM+ KR ++I+
Sbjct: 517 EGDEMERLKFVDSIKTYRSKATIFEIN---ATKKTLAS------DVMRAKRNCDRQLIDR 567
Query: 551 VHQQRSSKSM---------------------EKEVEPEADSLMAKEIKETHGSKRKAKTF 589
HQ++ + + E+ ++ S++ ++ K+ K KT
Sbjct: 568 -HQRKQQERLSLAAAKKPTASPAAQEAPEEGEEHLQEVFSSVVGRKRKQNPARKDAEKTK 626
Query: 590 K--------DEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQK 641
K +++++I P + E GL V + + AVLDL+ D++ + K
Sbjct: 627 KKQRLSVQEEKDFYIPYRPKDFDSERGLCVGRESSAFEQQASGAVLDLMGDENENMNVNK 686
Query: 642 QVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKATKT-GIYKKWKERSHKKVYLKG 700
++ WD++ K+++ E K ++TESGA + ++ +Y+KWK+R+ +
Sbjct: 687 KLLKWDRKKKRFVGQTGQE---DKKKKIRTESGAYISSSYNRNLYEKWKKRNK----IDE 739
Query: 701 ASNEGNAEETTSVPGGRHLGGNNRKFRGGK------NQQRSVPNAHVCSEIKDLDQV--- 751
++G AE G G K RG + + R V SE+K Q+
Sbjct: 740 QDSDGEAE-------GERRSGKQWKGRGARPTPSSPHGSRGPQQGKVRSELKTKQQIFKE 792
Query: 752 -------------------RKERQ--KKADRIAFMKGKTQKGK 773
+ RQ K+ R AF +G T+KGK
Sbjct: 793 RKKKAKERFLQSGGLKRLKSRNRQHLKEMRRSAFGRGATKKGK 835
>gi|54038020|gb|AAH84268.1| LOC495097 protein, partial [Xenopus laevis]
Length = 717
Score = 582 bits (1499), Expect = e-163, Method: Compositional matrix adjust.
Identities = 321/673 (47%), Positives = 437/673 (64%), Gaps = 63/673 (9%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
R + KKK KSGGF+S+ LS V++ + +KGYKVPTPIQRK +P+IL G DVVAMARTGSG
Sbjct: 65 RAQNKKKKKSGGFQSMGLSYPVYKGVMKKGYKVPTPIQRKVVPVILDGKDVVAMARTGSG 124
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTA FL+PM ++L H Q GVR LILSPTR+LALQTLKFTKELG++T L+ +L++GGD
Sbjct: 125 KTACFLIPMFEKLKAHSAQTGVRGLILSPTRELALQTLKFTKELGKFTGLKTALILGGDR 184
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
ME QF L +NPDIIIATPGRLMH E+ ++ L+SVEYVVFDEAD LF MGFAEQL +I
Sbjct: 185 MEDQFAALHENPDIIIATPGRLMHVAIEM-NLKLRSVEYVVFDEADRLFEMGFAEQLQEI 243
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
+ +L E RQTLLFSATLP L EFA+AGL +P L+RLDVDTK+S LKL+FF +R E+K
Sbjct: 244 ISRLPETRQTLLFSATLPKMLLEFARAGLTEPVLIRLDVDTKLSDQLKLSFFNVRVEDKP 303
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
A LL+++R + +QT+IFV+TKHH E+L L +G+ S Y +DQ ARKI++ F
Sbjct: 304 AVLLHLLRCVVKPQEQTVIFVATKHHAEYLRELLDMQGIPCSHIYSSLDQTARKINLGLF 363
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
K L+VTDVAARGIDIP+LDNVIN++FPPK K+F+HRVGR ARAGR+GTA+SF+
Sbjct: 364 LHGKVRALLVTDVAARGIDIPMLDNVINYNFPPKAKLFLHRVGRVARAGRSGTAYSFIAP 423
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEE-EVLLDMDGVMSKIDQAIANGETIYGRFPQTVID-- 429
+++ Y+ DLHLFL +P++ A ++ E D DGV+ GR PQ++ID
Sbjct: 424 DEIPYVYDLHLFLGRPLKLANAQNIETEADTDGVL--------------GRVPQSLIDDE 469
Query: 430 ---LVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPRE--GLHP 484
L++DR R S +L +L + NA++ Y K++P PS ESI+R KD G+HP
Sbjct: 470 DALLITDRER-----SLELQNLHQVSENAYKQYIKSRPTPSPESIKRVKDANYNLLGVHP 524
Query: 485 MFKNVLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVH 544
+F + L G E+ L F + +K+++ K TI E + S +VM+ KR
Sbjct: 525 LFWSQLGGEEMQRLKFVDGIKSYKSKATIFEINSTSKTSAS---------EVMRAKRNHD 575
Query: 545 EKII---NLVHQQRSSKSM--------------EKEVEPEADSLMAK----EIKETHGS- 582
K+I + ++++S ++ E+ +E ++ K + E GS
Sbjct: 576 GKLIAKFQRLQEEKTSATVTSGISGLCCKQESDEENIEGVFSQVIGKRKMTDKDEAEGSK 635
Query: 583 KRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEA-AVLDLVADDSGGLQKQK 641
KRK +D Y+I P + E GLS+ G + A AV+DL+ D + L+K K
Sbjct: 636 KRKGGASQDSNYYIPYRPKDFESERGLSI---GGSSFEQAAAGAVMDLLGDHTEDLKKNK 692
Query: 642 QVYHWDKRGKKYI 654
QV WD++ KK++
Sbjct: 693 QVLKWDRKKKKFV 705
>gi|417405072|gb|JAA49261.1| Putative atp-dependent rna helicase [Desmodus rotundus]
Length = 876
Score = 581 bits (1498), Expect = e-163, Method: Compositional matrix adjust.
Identities = 340/793 (42%), Positives = 479/793 (60%), Gaps = 79/793 (9%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
R + KKK KSGGF+S+ LS VF+ I +KGYKVPTPIQRKT+P+IL G DVVAMARTGSG
Sbjct: 86 RAQNKKKKKSGGFQSMGLSYTVFKGIMKKGYKVPTPIQRKTIPVILDGRDVVAMARTGSG 145
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTA FL+PM +RL Q G RALILSPTR+LALQT+KFTKELG++T L+ +L++GGD
Sbjct: 146 KTACFLIPMFERLKARSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDK 205
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
ME QF L +NPD+IIATPGRLMH E+ ++ L+SVEYVVFDEAD LF MGFAEQL +I
Sbjct: 206 MEDQFSALHENPDVIIATPGRLMHVAVEM-NLKLQSVEYVVFDEADRLFEMGFAEQLQEI 264
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
+ +L QT+LFSATLP L EFA+AGL +P L+RLDVD K++ LK +FF +R++ K
Sbjct: 265 ISRLPGGHQTVLFSATLPKMLVEFARAGLTEPVLIRLDVDAKLNEQLKTSFFLVREDTKA 324
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
A LLY++R + QT++FV+TKHH E+L+ L + + + Y +DQ ARKI++++F
Sbjct: 325 AVLLYLLRTVMRPQDQTVVFVATKHHAEYLSELLTTQRMSCAHIYSALDQTARKINLAKF 384
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
K LIVTD+AARG+DIPLLDNVIN+ FP K K+F+HRVGR ARAGR+GTA+S V
Sbjct: 385 THGKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAP 444
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEEEV--LLDMDGVMSKIDQAIANGETIYGRFPQTVIDL 430
+++ YLLDLHLFL + + A +EE + DGV+ GR PQ+++D
Sbjct: 445 DEVPYLLDLHLFLGRALSLAQPQEEPSGAVGADGVL--------------GRVPQSLVDD 490
Query: 431 VSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK--DLPREGLHPMFKN 488
+R +++S +L L R NA + Y +++P PS ESI+R K DL GLHP+F +
Sbjct: 491 EDCSLRSALEASLELRGLCRVADNALQQYVRSRPAPSPESIKRTKELDLAGLGLHPLFSS 550
Query: 489 VLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKII 548
E EL L + L+ +R + TI E A S+ SSQ VM+ KR K I
Sbjct: 551 NFEEKELQRLRLVDGLRKYRSRATIFEIN---ASSRDF---SSQ---VMRAKRQKDSKAI 601
Query: 549 NLVHQQRSSKS--------------------------MEKEVEPEADSLMAKEIKETHGS 582
Q R + ++V E ++ G+
Sbjct: 602 ASFQQGREERQEGLAGPAPSCSAPKEEQPEEEEEAGESAEDVFTEVVGRKRQQPGPDRGA 661
Query: 583 KRKAKTF--KDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQ 640
KR+ + +D+ +++ P + E GLSV D G ++ AVLDL+ D++ L +
Sbjct: 662 KRRREEARQRDQGFYVPYRPKDFDSERGLSVSGDGGTFEQQVAGAVLDLMGDEAHNLTRG 721
Query: 641 KQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLK 699
+Q WD++ K+++ G+ K +KTESG + ++ K +YKKWK++ +K+ +
Sbjct: 722 RQQLKWDRKKKRFV----GQSGQEDKKKIKTESGRYISSSYKRDLYKKWKQK--QKIDDR 775
Query: 700 GASNEGNAEETTSVPGGRHLGGNNRKFRGGKNQ---QRSVPNA---HVCSEIKDLDQVRK 753
+ EG ++ G R ++ G+ Q Q P A V SE+K Q+ K
Sbjct: 776 DSEEEGTSDRR---------GPERRGWKRGQGQGAPQPCAPGAPAGRVRSELKTKQQILK 826
Query: 754 ERQKKADRIAFMK 766
+R +KA ++ F++
Sbjct: 827 QR-RKAQKMRFLQ 838
>gi|297484847|ref|XP_002694562.1| PREDICTED: ATP-dependent RNA helicase DDX54 [Bos taurus]
gi|296478588|tpg|DAA20703.1| TPA: DEAD box RNA helicase DP97-like [Bos taurus]
Length = 876
Score = 580 bits (1495), Expect = e-163, Method: Compositional matrix adjust.
Identities = 338/785 (43%), Positives = 478/785 (60%), Gaps = 63/785 (8%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
R + KKK KSGGF+S+ LS VF+ I +KGYKVPTPIQRKT+P+IL G DVVAMARTGSG
Sbjct: 86 RAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPMILDGKDVVAMARTGSG 145
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTA FL+PM +RL H Q G RALILSPTR+LALQT+KFTKELG++T L+ +L++GGD
Sbjct: 146 KTACFLIPMFERLKTHSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDK 205
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
ME QF L +NPDIIIATPGRL+H E+ ++ L+SVEYVVFDEAD LF MGFAEQL +I
Sbjct: 206 MEDQFAALHENPDIIIATPGRLVHVAVEM-NLKLQSVEYVVFDEADRLFEMGFAEQLQEI 264
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
+G+L QT+LFSATLP L EFA+AGL +P L+RLDVD+K++ LK +FF +R++ K
Sbjct: 265 IGRLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDSKLNEQLKTSFFLVREDAKA 324
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
A LL+++R + QT++FV+TKHH E+L+ L +G+ + Y +DQ ARKI+++RF
Sbjct: 325 AVLLHLLRNVVRPQDQTVVFVATKHHAEYLSELLATQGVSCAHIYSALDQTARKINLARF 384
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
K LIVTD+AARG+DIPLLDNVIN+ FP K K+F+HRVGR ARAGR+GTA+S V
Sbjct: 385 THGKCSALIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAP 444
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVS 432
+++ YLLDLHLFL + + A EE G+ + GR PQ V+D
Sbjct: 445 DEVPYLLDLHLFLGRALTLARPPEE------------PSGTEGGDGVLGRVPQGVVDDED 492
Query: 433 DRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK--DLPREGLHPMFKNVL 490
+R +++S +L L R NA + Y +++P PS ESI+R K DL GLHP+F +
Sbjct: 493 CGLRTSLEASLELRGLSRVANNAQQQYVRSRPAPSPESIKRAKELDLAGLGLHPLFSSRF 552
Query: 491 EGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINL 550
+ EL L + ++ +R + TI E A S+ L SSQ VM+ KR K I
Sbjct: 553 QQEELQRLRLVDSIRNYRSRATIFEIN---ASSRDL---SSQ---VMRAKREKDRKAIAS 603
Query: 551 VHQQRSSKS------------------MEKEVEPEADSLMAKEI----KETHGSKRKAKT 588
Q R + ++EV E+ + E+ ++ G +R AK
Sbjct: 604 FQQGRQERQEGPAGPTPSLPAPQEEQPEKEEVAGESVEDVFTEVVGRKRQQPGPQRGAKR 663
Query: 589 F------KDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQ 642
+D+ ++I P + E GLS+ D G ++ A LDL+ D++ L + +Q
Sbjct: 664 RREEARQRDQAFYIPYRPKDFDSERGLSIGGDGGAFEQQVAGAALDLMGDEAQSLTRGRQ 723
Query: 643 VYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGA 701
WD++ K+++ G+ K +KTESG + ++ K +Y+KWK++ +K+ + +
Sbjct: 724 QLRWDRKKKRFV----GQSGQEDKKKIKTESGRYISSSYKRDLYQKWKQK--QKIDDRDS 777
Query: 702 SNEGNAEETTSVPGGRHLGGNNRKFRGGKNQQRSVPNAHVCSEIKDLDQVRKERQKKADR 761
EG + R G R + + P V SE+K Q+ K+R ++A +
Sbjct: 778 EEEGTFDRRGPE---RRGGKRGRGQGASQPRTPGTPAGRVLSELKTKQQILKQR-RRAQK 833
Query: 762 IAFMK 766
+ F++
Sbjct: 834 MRFLQ 838
>gi|351694739|gb|EHA97657.1| ATP-dependent RNA helicase DDX54 [Heterocephalus glaber]
Length = 876
Score = 579 bits (1493), Expect = e-162, Method: Compositional matrix adjust.
Identities = 345/802 (43%), Positives = 487/802 (60%), Gaps = 71/802 (8%)
Query: 2 SLVSSKAELKRRE----KQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLI 57
S +S EL RE + KKK KSGGF+S+ LS VF+ I +KGYKVPTPIQRKT+P+I
Sbjct: 71 SECTSDVELDTREMVRAQNKKKKKSGGFQSMGLSYLVFKGIMKKGYKVPTPIQRKTIPVI 130
Query: 58 LSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117
L G D VAMARTGSGKTA FL+PM +RL Q G RALILSPTR+LALQT+KFTKELG
Sbjct: 131 LDGKDTVAMARTGSGKTACFLIPMFERLKTRSAQTGARALILSPTRELALQTMKFTKELG 190
Query: 118 RYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEA 177
R+T L+ +L++GGD ME QF L +NPDIIIATPGRL+H E+ ++ L SVEYVVFDEA
Sbjct: 191 RFTGLKTALILGGDKMEDQFAALHENPDIIIATPGRLVHVAVEM-NLKLHSVEYVVFDEA 249
Query: 178 DCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISP 237
D LF MGFAEQL +I+ +L QT+LFSATLP L EFA+AGL +P L+RLDVD K++
Sbjct: 250 DRLFEMGFAEQLQEIISRLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDAKLNE 309
Query: 238 DLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCY 297
LK +FF +R++ K A LL+++R + QT++FV+TKHH E+L L + + + Y
Sbjct: 310 QLKTSFFLVREDTKAAVLLHLLRTVVRPQDQTVVFVATKHHAEYLQELLSTQRVSCTHIY 369
Query: 298 GDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRA 357
+DQ ARKI+++RF K LIVTD+AARG+DIPLLDNVIN+ FP K K+F+HRVGR
Sbjct: 370 SALDQTARKINLARFTHGKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRV 429
Query: 358 ARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVL--LDMDGVMSKIDQAIAN 415
ARAGR+GTA+S V+ +++ YLLDLHLF+ + + AP +E +DGV+
Sbjct: 430 ARAGRSGTAYSLVSPDEVPYLLDLHLFVGRTLSLAPPNQEPTGAGSVDGVL--------- 480
Query: 416 GETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK 475
GR PQ+V+D +R ++ S +L SL R NA + Y +++P PS ESI+R K
Sbjct: 481 -----GRVPQSVVDDEDGGLRAALEVSLELRSLGRVADNAQQQYVRSRPAPSPESIKRAK 535
Query: 476 --DLPREGLHPMFKNVLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQW 533
DL GLHP+F + E EL L + ++ +R + TI E +A S+ L SSQ
Sbjct: 536 ELDLVALGLHPLFSSGFEEEELQRLRLVDSIRQYRSRATIFEI---SASSQDL---SSQ- 588
Query: 534 VDVMKKKRAVHEKIINLVHQQRSSKS-----------MEKEVEPEADSLMAKEIKETH-- 580
VM+ KR + I Q R + +E PE + A+ +++
Sbjct: 589 --VMRAKRQKDHRAITRFQQGRQERQEGPAGPAPACPTLQEEPPEKEEDAAESMEDVFTE 646
Query: 581 -------------GSKRKAKTF--KDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAA 625
G+KR+ + +D+E++I P + E GLSV S G ++ A
Sbjct: 647 VVGQKRPRPGPDGGAKRRREEARQRDQEFYIPYRPKDFDSERGLSVGSAAGAFEQQVAGA 706
Query: 626 VLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGI 684
VLDL+ D+S L + +Q WD++ K+++ G+ K +KTESG + ++ + +
Sbjct: 707 VLDLMGDESQNLTRGQQQLKWDRKKKRFV----GQAGQDDKKKIKTESGRYISSSYRRDL 762
Query: 685 YKKWKERSHKKVYLKGASNEGNAEETTSVPGGRHLGGNNRKFRGGKNQQRSVPNAHVCSE 744
Y+KWK++ +K+ + + EG ++ R G R + + S P V SE
Sbjct: 763 YQKWKQK--QKIDGRDSEEEGPSDRGGPP---RRGGKRGRGQGASQPRAPSTPTGRVRSE 817
Query: 745 IKDLDQVRKERQKKADRIAFMK 766
+K Q+ K+R ++A ++ F++
Sbjct: 818 LKTKQQILKQR-RRAQKLRFLQ 838
>gi|432885906|ref|XP_004074815.1| PREDICTED: ATP-dependent RNA helicase DDX54-like isoform 1 [Oryzias
latipes]
Length = 852
Score = 578 bits (1490), Expect = e-162, Method: Compositional matrix adjust.
Identities = 322/705 (45%), Positives = 442/705 (62%), Gaps = 48/705 (6%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
R + KKK KSGGF+S+ LS V++ + +KGYKVPTPIQRKT+P+IL G DVVAMARTGSG
Sbjct: 67 RAQNKKKKKSGGFQSMGLSYPVYKGVMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSG 126
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTAAFLVPM ++L G RALI+SPTR+LALQT+KFTKELG++ L+ +L++GGD
Sbjct: 127 KTAAFLVPMFEKLKAPQASAGARALIMSPTRELALQTMKFTKELGKFAGLKTALILGGDR 186
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
ME QF L +NPDIII TPGRLMH + E+ ++ L SVEYVVFDEAD LF MGFAEQL +I
Sbjct: 187 MEDQFAALHENPDIIIGTPGRLMHVVKEM-NLKLHSVEYVVFDEADRLFEMGFAEQLQEI 245
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
+ +L + RQTLLFSATLP L EFA+AGL +P L+RLDVD+K+S +KL+FF LR ++K
Sbjct: 246 IQRLPDTRQTLLFSATLPKLLVEFARAGLTEPVLIRLDVDSKLSDQIKLSFFHLRVDDKP 305
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
A LL++++ +QT++FV+TKHHVE+L L EG+E + Y +DQ ARKI++ +F
Sbjct: 306 AMLLHLLKNVAKPQEQTVVFVATKHHVEYLRELLSSEGIECAYIYSALDQTARKINIGKF 365
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
RK M LIVTDVAARGIDIP+LD VIN++FP KPK+F+HRVGR RAGR+GT +S +
Sbjct: 366 VHRKAMVLIVTDVAARGIDIPMLDIVINYNFPSKPKLFLHRVGRVGRAGRSGTTYSLICP 425
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVS 432
++M +L DLHLFL +P++ A + + DGV+ GR PQ ++D
Sbjct: 426 DEMPFLYDLHLFLGRPVQFATLDH--TQECDGVL--------------GRVPQNILDDEG 469
Query: 433 DRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK--DLPREGLHPMFKNVL 490
+ ++S DL +L R NA++ Y K++P PS ESIRR K DL +HP L
Sbjct: 470 SNLITAHENSLDLQNLHRVSENAYKQYLKSRPNPSAESIRRVKNLDLSCMAVHPFLGCGL 529
Query: 491 EGGELMALAFSERLKAFRPKQTILE--AEGEAARSKHLQGPSSQWVDVMKK--KR----A 542
E EL L + +K ++ K TI E + + S+ ++ S+ +M K KR A
Sbjct: 530 EKMELERLQIVDAIKGYKSKSTIFEINSNSKTTASEVMRAKRSKDTPLMDKFSKRKEDLA 589
Query: 543 VHEKIINLVHQQRSSKSMEKEVEPEADSLMAKEIKETHGSKRKA--------------KT 588
K +V + S + E E D + E G KRK +T
Sbjct: 590 AENKPQLVVASANNGDSTQGADEEEED--LKGVFSEVLGGKRKGPQKHEEHLQNKRRKQT 647
Query: 589 FKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDK 648
KDEEY+I P + + E GLS+ + + +AVLDL+ DDS L + K++ WD+
Sbjct: 648 GKDEEYYIPYRPKDFNSEKGLSLGGEGSNFEQQASSAVLDLMGDDSNQLNQHKKIMKWDR 707
Query: 649 RGKKYIKLNNGERVSASGKVVKTESGAKV--KATKTGIYKKWKER 691
+ K+++ R K +KTE+ V K + Y++WK++
Sbjct: 708 KRKRFV---TETRKEDHKKKIKTENNRVVVNKKNRKNFYEEWKKK 749
>gi|302832666|ref|XP_002947897.1| hypothetical protein VOLCADRAFT_103677 [Volvox carteri f.
nagariensis]
gi|300266699|gb|EFJ50885.1| hypothetical protein VOLCADRAFT_103677 [Volvox carteri f.
nagariensis]
Length = 1338
Score = 578 bits (1490), Expect = e-162, Method: Compositional matrix adjust.
Identities = 310/647 (47%), Positives = 416/647 (64%), Gaps = 74/647 (11%)
Query: 11 KRREKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTG 70
K+ +++K+K K+G F+++ +P V RAIKRKGY++PTPIQRK MPLI+ G DVV MARTG
Sbjct: 33 KKLKEEKRKMKAGSFDTMGFAPEVLRAIKRKGYRLPTPIQRKAMPLIMQGLDVVGMARTG 92
Query: 71 SGKTAAFLVPMLQR---------------------------------------------- 84
SGKTAAF++PM+ R
Sbjct: 93 SGKTAAFVLPMIHRHVGNGARVAVSLHVPGSASCICACERVPKSTDADVHRHGWANEASE 152
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L QH + G RA+IL+PTR+LALQT K +EL R+TDLR + LVGGDSME QFEELA NP
Sbjct: 153 LKQHSIKAGARAVILAPTRELALQTHKTVRELARFTDLRTACLVGGDSMEVQFEELAANP 212
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
DII+ATPGRL HHL EVE +SL+SVEY V DEAD +F MGF Q+ ++L ++S RQTLL
Sbjct: 213 DIIVATPGRLAHHLEEVEGLSLRSVEYCVCDEADRMFEMGFIIQVSELLRKMSPARQTLL 272
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P+ LAEFA+AGL P LVRLD + +ISP L LAFFT R E+K AALL+++RE +
Sbjct: 273 FSATMPATLAEFAQAGLNAPQLVRLDTERRISPQLGLAFFTCRMEDKVAALLHLVREVVP 332
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
+ Q T++F +T+HH EFL L +EG++ + +G MDQ ARKIHV++FR + L+ TD
Sbjct: 333 AKQLTILFTATRHHAEFLYNLLLKEGVDAACVFGSMDQTARKIHVAKFRGGRCHLLVTTD 392
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
VAARGIDIPL+DNVIN+DFPPKP++FVHRVGRAAR GR+GTA+S +T +++ YLLDLHL+
Sbjct: 393 VAARGIDIPLIDNVINFDFPPKPELFVHRVGRAARMGRSGTAYSLLTRDELPYLLDLHLY 452
Query: 385 LSKPIRAAPSEEEV----LLDMDGVMSKIDQAIANGE-TIYGRFPQTVIDLVSDRVREII 439
LS+ ++ AP E + + + A AN E + YG P V+D + + VRE++
Sbjct: 453 LSRSVKPAPLVPEAGPLPADEAADAAALVAAAAANSEDSTYGTLPAVVLDPLIEHVREVV 512
Query: 440 DSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVLEGGEL---- 495
S+ADL+ +QRT NA+ +Y KT+P PS +S+RR + L +EG+HP+ +L +
Sbjct: 513 ASAADLDGMQRTLANAWGMYCKTRPQPSAQSVRRARALAKEGVHPLLLALLPKTKYTQIE 572
Query: 496 --MALA-FSERLKAFRPKQTILEAEGEAARSKH-----LQGPSSQW------VDVMKKKR 541
+ALA F+ERLK FRP T+ EAE +S L+G S+ DVM KR
Sbjct: 573 NEVALAQFTERLKTFRPTATVFEAEIARVKSTFTNPLLLEGGSASLGRGGKSTDVMATKR 632
Query: 542 AVHEKIINLVHQQRSSKSMEKEVEPEADSLMAKEIKETHGSKRKAKT 588
A H II Q++ + + PE ++ KE KR+ T
Sbjct: 633 AAHAHIIEKERQKKM-----RLMAPEEQRGDQQDPKEKADDKRRTTT 674
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 94/208 (45%), Gaps = 43/208 (20%)
Query: 589 FKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDK 648
F+D +IS V H + V + + L+AAVLDL A+D G+ K+ YHWDK
Sbjct: 770 FRDPSLYISHVRDGRHRDEAFDVETR----VAELQAAVLDLTAEDQQGMTDSKRRYHWDK 825
Query: 649 RGKKYIKLNNGERVSASGKVVKTESGAKVKATKTG----IYKKWKERSHKKVYLKGASNE 704
R KKY+ L + E G+ ++ E+G KV K G +Y+KW + HK+V A +E
Sbjct: 826 RSKKYV-LRSTEDTQRKGRKLRNEAG-KVVQVKEGERGELYRKWSKAHHKRV--AAAGDE 881
Query: 705 GNAEETTSVPGGRHLGGNNR--KFRGGK-------------------------NQQRSVP 737
+ E S G NR FR G +Q +
Sbjct: 882 EDTERGGSGGLGGRFDRKNRHTNFRRGSSPGTGADAGGRGGKSGRGGRGGKGGDQPKGAR 941
Query: 738 NAHVCSEIKDLDQVRKERQKKADRIAFM 765
NA + +E DQVRKER+K R A++
Sbjct: 942 NAGLKTE----DQVRKERKKGERRKAWL 965
>gi|410904152|ref|XP_003965556.1| PREDICTED: ATP-dependent RNA helicase DDX54-like [Takifugu
rubripes]
Length = 863
Score = 578 bits (1489), Expect = e-162, Method: Compositional matrix adjust.
Identities = 315/715 (44%), Positives = 446/715 (62%), Gaps = 65/715 (9%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
R + KKK KSGGF+S+ LS V++ + RKGYKVPTPIQRKT+P+IL G DVVAMARTGSG
Sbjct: 64 RAQNKKKKKSGGFQSMGLSYPVYKGVMRKGYKVPTPIQRKTIPVILDGKDVVAMARTGSG 123
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTAAFL+PM ++L Q G RALILSPTR+LALQT+KFTKELG++T L+ +L++GGDS
Sbjct: 124 KTAAFLIPMFEKLKAPQAQTGARALILSPTRELALQTMKFTKELGKFTKLKTALILGGDS 183
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
M+ QF L +NPDIII TPGRLMH + E+ ++ L ++EYVVFDEAD LF MGFAEQL +I
Sbjct: 184 MDDQFAALHENPDIIIGTPGRLMHVIKEM-NLKLHNMEYVVFDEADRLFEMGFAEQLQEI 242
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
+ + + RQTLLFSATLP L EFA+AGL +P L+RLDVD+K+S +KL+FF +R ++K
Sbjct: 243 IRRFPDTRQTLLFSATLPKLLVEFARAGLTEPVLIRLDVDSKLSDQIKLSFFHVRVDDKA 302
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
A LLY++R + +QT++F +TKHHVE+L L EG+E + Y +DQ ARKI++ +F
Sbjct: 303 ALLLYLLRNVVKPQEQTVVFAATKHHVEYLKELLTLEGVECAYIYSSLDQTARKINIGKF 362
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
RK M LIVTDVAARGIDIPLLDNVIN++FP K K+F+HRVGR RAGR+GTA+S +
Sbjct: 363 VHRKAMVLIVTDVAARGIDIPLLDNVINYNFPSKAKLFLHRVGRVGRAGRSGTAYSMICQ 422
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVS 432
++M ++ DLHLFL +P++ A + + E + GR PQ+++D S
Sbjct: 423 DEMPFVFDLHLFLGRPVQFATPDH----------------TKDTEGVCGRVPQSILDDES 466
Query: 433 DRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK--DLPREGLHPMFKNVL 490
+ ++S DL +L R NA++ Y K++P PS ESIRR K D +HP+ L
Sbjct: 467 SHLITTHENSLDLQNLHRVSENAYKQYLKSRPNPSTESIRRVKSTDSSSMAVHPLLGVGL 526
Query: 491 EGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINL 550
E EL L + +K ++ K TI E + +Q +VM+ KR+ +++
Sbjct: 527 EKTELERLQIVDAIKGYKSKSTIFEINSSS---------KTQASEVMRAKRSKDARLVEK 577
Query: 551 VHQQRSSKSME----KEVEPE---------ADSLMAKEIKETH----GSKRKA------- 586
+Q+ S + E + V P A + ++KE G KR+
Sbjct: 578 FGKQKDSLAAEAPLRQPVCPSTTDGDETAYAPADDDDDLKEVFSAVVGGKRRGLRGDRED 637
Query: 587 --------KTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQ 638
+ KDEEY+I P + + E GLS+ + + +AVLDL+ D+ L
Sbjct: 638 WPKNKKSRQPGKDEEYYIPYRPKDFNSERGLSLSGEGTVFEQQASSAVLDLMGDEGDRLN 697
Query: 639 KQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKV--KATKTGIYKKWKER 691
+ K + WD++ K++++ + K +KT+ G + K K Y++WK++
Sbjct: 698 QHKTIMKWDRKRKRFVREMGKD---DHKKKIKTDGGQVIANKKNKKNFYEEWKKK 749
>gi|432885908|ref|XP_004074816.1| PREDICTED: ATP-dependent RNA helicase DDX54-like isoform 2 [Oryzias
latipes]
Length = 853
Score = 578 bits (1489), Expect = e-162, Method: Compositional matrix adjust.
Identities = 322/705 (45%), Positives = 442/705 (62%), Gaps = 48/705 (6%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
R + KKK KSGGF+S+ LS V++ + +KGYKVPTPIQRKT+P+IL G DVVAMARTGSG
Sbjct: 68 RAQNKKKKKSGGFQSMGLSYPVYKGVMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSG 127
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTAAFLVPM ++L G RALI+SPTR+LALQT+KFTKELG++ L+ +L++GGD
Sbjct: 128 KTAAFLVPMFEKLKAPQASAGARALIMSPTRELALQTMKFTKELGKFAGLKTALILGGDR 187
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
ME QF L +NPDIII TPGRLMH + E+ ++ L SVEYVVFDEAD LF MGFAEQL +I
Sbjct: 188 MEDQFAALHENPDIIIGTPGRLMHVVKEM-NLKLHSVEYVVFDEADRLFEMGFAEQLQEI 246
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
+ +L + RQTLLFSATLP L EFA+AGL +P L+RLDVD+K+S +KL+FF LR ++K
Sbjct: 247 IQRLPDTRQTLLFSATLPKLLVEFARAGLTEPVLIRLDVDSKLSDQIKLSFFHLRVDDKP 306
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
A LL++++ +QT++FV+TKHHVE+L L EG+E + Y +DQ ARKI++ +F
Sbjct: 307 AMLLHLLKNVAKPQEQTVVFVATKHHVEYLRELLSSEGIECAYIYSALDQTARKINIGKF 366
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
RK M LIVTDVAARGIDIP+LD VIN++FP KPK+F+HRVGR RAGR+GT +S +
Sbjct: 367 VHRKAMVLIVTDVAARGIDIPMLDIVINYNFPSKPKLFLHRVGRVGRAGRSGTTYSLICP 426
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVS 432
++M +L DLHLFL +P++ A + + DGV+ GR PQ ++D
Sbjct: 427 DEMPFLYDLHLFLGRPVQFATLDH--TQECDGVL--------------GRVPQNILDDEG 470
Query: 433 DRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK--DLPREGLHPMFKNVL 490
+ ++S DL +L R NA++ Y K++P PS ESIRR K DL +HP L
Sbjct: 471 SNLITAHENSLDLQNLHRVSENAYKQYLKSRPNPSAESIRRVKNLDLSCMAVHPFLGCGL 530
Query: 491 EGGELMALAFSERLKAFRPKQTILE--AEGEAARSKHLQGPSSQWVDVMKK--KR----A 542
E EL L + +K ++ K TI E + + S+ ++ S+ +M K KR A
Sbjct: 531 EKMELERLQIVDAIKGYKSKSTIFEINSNSKTTASEVMRAKRSKDTPLMDKFSKRKEDLA 590
Query: 543 VHEKIINLVHQQRSSKSMEKEVEPEADSLMAKEIKETHGSKRKA--------------KT 588
K +V + S + E E D + E G KRK +T
Sbjct: 591 AENKPQLVVASANNGDSTQGADEEEED--LKGVFSEVLGGKRKGPQKHEEHLQNKRRKQT 648
Query: 589 FKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDK 648
KDEEY+I P + + E GLS+ + + +AVLDL+ DDS L + K++ WD+
Sbjct: 649 GKDEEYYIPYRPKDFNSEKGLSLGGEGSNFEQQASSAVLDLMGDDSNQLNQHKKIMKWDR 708
Query: 649 RGKKYIKLNNGERVSASGKVVKTESGAKV--KATKTGIYKKWKER 691
+ K+++ R K +KTE+ V K + Y++WK++
Sbjct: 709 KRKRFV---TETRKEDHKKKIKTENNRVVVNKKNRKNFYEEWKKK 750
>gi|395834008|ref|XP_003790009.1| PREDICTED: ATP-dependent RNA helicase DDX54 [Otolemur garnettii]
Length = 859
Score = 578 bits (1489), Expect = e-162, Method: Compositional matrix adjust.
Identities = 339/788 (43%), Positives = 480/788 (60%), Gaps = 70/788 (8%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
R + KKK KSGGF+S+ LS VF+ I +KGYKVPTPIQRKT+P+IL G DVVAMARTGSG
Sbjct: 70 RAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSG 129
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTA FL+PM +RL Q G RALILSPTR+LALQT+KFTKELG++T L+ +L++GGD
Sbjct: 130 KTACFLLPMFERLKTRSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDK 189
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
ME QF L +NPDIIIATPGRL+H E+ ++ L+SVEYVVFDEAD LF MGFAEQL +I
Sbjct: 190 MEDQFAALHENPDIIIATPGRLVHVAVEM-NLKLQSVEYVVFDEADRLFEMGFAEQLQEI 248
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
+ +L + QT+LFSATLP L EFA+AGL +P L+RLDVD K++ LK +FF +R++ K
Sbjct: 249 IARLPDGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDAKLNEQLKTSFFLVREDTKA 308
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
A LLY++R + QT++FV+TKHH E+L L + + + Y +DQ ARKI++++F
Sbjct: 309 AVLLYLLRNVVRPQDQTVVFVATKHHAEYLTELLTAQCVSCTHIYSALDQTARKINLAKF 368
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
K LIVTD+AARG+DIPLLDNVIN+ FP K K+F+HRVGR ARAGR+GTA+S V
Sbjct: 369 TLGKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAP 428
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEEEV--LLDMDGVMSKIDQAIANGETIYGRFPQTVIDL 430
+++ YLLDLHLFL + + A EE L+ +DGV+ GR PQ+V+D
Sbjct: 429 DEVPYLLDLHLFLGRALTLAHPHEESSGLVGVDGVL--------------GRVPQSVVDE 474
Query: 431 VSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREG--LHPMFKN 488
+R ++ S +L L R NA + Y +++P PS ESI+R K+L G LHP+F +
Sbjct: 475 EDSGLRSALEKSLELRGLGRVADNAQQQYVRSRPAPSPESIKRAKELDLVGLSLHPLFSS 534
Query: 489 VLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKII 548
E EL L + +K +R + TI E S+ L SSQ VM+ KR K I
Sbjct: 535 CFEEEELQRLRLVDSIKNYRSRATIFEIN---TSSRDL---SSQ---VMRAKRQKDRKAI 585
Query: 549 NLVHQQRS----------------------SKSMEKEVEPEADSLMAKEIKE---THGSK 583
Q R + + VE ++ ++ ++ G+K
Sbjct: 586 ARFQQVRQKGLVGPVLSHPALQEEQPEEEEEEDPGESVENVFTEILGRKRQQPGPNMGAK 645
Query: 584 RKAKTF--KDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQK 641
R+ + +D+E+++ P + E GLSV D G ++ AVLDL+ D++ L + +
Sbjct: 646 RRREEARQRDQEFYVPYRPKDFDSERGLSVGGDGGTFEQQVTGAVLDLMGDETQNLTRGR 705
Query: 642 QVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKG 700
Q WD++ K+++ G+ K +KTESG + ++ K +Y+KWK++ +K+ +
Sbjct: 706 QQLKWDRKKKRFV----GQSGQEDKKKIKTESGGFISSSYKRDLYQKWKQK--QKIDDRD 759
Query: 701 ASNEGNAEETTSVPGGRHLGGNNRKFRGGKNQQR--SVPNAHVCSEIKDLDQVRKERQKK 758
+ EG ++ G R G +Q R P HV SE+K Q+ K+R ++
Sbjct: 760 SEEEGASDRRGP-----ERRGGKRGRGRGSSQPRIPGTPAGHVRSELKTKQQILKQR-RR 813
Query: 759 ADRIAFMK 766
++ F++
Sbjct: 814 TQKLRFLQ 821
>gi|194214292|ref|XP_001915035.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase
DDX54-like [Equus caballus]
Length = 860
Score = 577 bits (1488), Expect = e-162, Method: Compositional matrix adjust.
Identities = 322/731 (44%), Positives = 455/731 (62%), Gaps = 63/731 (8%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
R + KKK KSGGF+S+ LS VFR + +KGYKVPTPIQRKT+P+IL G DVVAMARTGSG
Sbjct: 66 RAQNKKKKKSGGFQSMGLSYPVFRGVMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSG 125
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTA FL+PM +RL H Q G RAL+LSPTR+LALQT+KFTKELG++T L+ +L++GGD
Sbjct: 126 KTACFLIPMFERLKTHSAQTGARALVLSPTRELALQTMKFTKELGKFTGLKTALILGGDK 185
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
ME QF L +NPDIIIATPGRL+H E+ ++ L+SVEYVVFDEAD LF MGFAEQL +I
Sbjct: 186 MEDQFAALHENPDIIIATPGRLVHVAVEM-NLKLQSVEYVVFDEADRLFEMGFAEQLQEI 244
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
+G+L QT+LFSATLP L EFA+AGL +P L+RLDVD K++ LK +F +R++ K
Sbjct: 245 IGRLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDAKLNEQLKTSFLLVREDAKA 304
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
A LL+++R + QT++FV+TKHH E+L+ L + + + Y +DQ ARKI++++F
Sbjct: 305 AVLLHLLRTAVRPQDQTVVFVATKHHAEYLSELLTTQRVSCAHIYSALDQTARKINLAKF 364
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
K LIVTD+AARG+DIPLLDNVIN+ FP K K+F+HRVGR ARAGR+GTA+S V
Sbjct: 365 THGKCSALIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAP 424
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVS 432
+++ YLLDLHLFL + + A EE G+ + GR PQ+V+D
Sbjct: 425 DEVPYLLDLHLFLGRTLTLACPHEE------------PSGAVGGDGVLGRVPQSVVDDED 472
Query: 433 DRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK--DLPREGLHPMFKNVL 490
+R +++S +L L R NA + Y +++P PS ESI+R K DL GLHP+F +
Sbjct: 473 CSLRNTLEASLELQGLGRVADNAQQQYVRSRPAPSPESIKRAKELDLAGLGLHPLFSSRF 532
Query: 491 EGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINL 550
E EL L + +K++R + TI E A S+ L SSQ VM+ KR K I
Sbjct: 533 EEKELQRLRLVDSIKSYRARATIFEIN---ASSRDL---SSQ---VMRAKRQKDRKAIAR 583
Query: 551 VHQQRSSK-------------------------SMEKEVEPEADSLMAKEIKET-----H 580
Q R + + VE ++ ++ +++
Sbjct: 584 FQQGRQERRESLASAASSCPPPQGEPPKEEEEAEAGESVEDVFTEVVGRKRQQSAADPAR 643
Query: 581 GSKRKAKTF--KDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQ 638
G+KR+ + +D+ +++ P + E GLSV D+G + +AVLDL+ D++ L
Sbjct: 644 GAKRRREEARQRDQAFYVPYRPKDFDSERGLSVSGDRGAFEQQAASAVLDLMGDEAQNLT 703
Query: 639 KQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVY 697
+ +Q WD++ K+++ G+ K +KTESG + ++ K +Y+KWK++ +K+
Sbjct: 704 RGRQQLKWDRKKKRFV----GQSGQEDKKKIKTESGRYISSSYKRDLYQKWKQK--QKID 757
Query: 698 LKGASNEGNAE 708
+ + EG E
Sbjct: 758 DRDSEEEGAPE 768
>gi|355683380|gb|AER97088.1| DEAD box polypeptide 54 [Mustela putorius furo]
Length = 877
Score = 577 bits (1487), Expect = e-162, Method: Compositional matrix adjust.
Identities = 334/793 (42%), Positives = 485/793 (61%), Gaps = 76/793 (9%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
R + KKK KSGGF+S+ LS VF+ I +KGYKVPTPIQRKT+P+IL G DVVAMARTGSG
Sbjct: 85 RAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSG 144
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTA FL+PM +RL Q G RAL+LSPTR+LALQT+KFTKELG++T LR +L++GGD
Sbjct: 145 KTACFLIPMFERLKTRSAQTGARALVLSPTRELALQTMKFTKELGKFTGLRTALILGGDK 204
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
ME QF L +NPDIIIATPGRL+H E+ ++ L+S+EYVVFDEAD LF MGFAEQL +I
Sbjct: 205 MEDQFAALHENPDIIIATPGRLVHVAVEM-NLKLQSIEYVVFDEADRLFEMGFAEQLQEI 263
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
+G+L QT+LFSATLP L EFA+AGL +P L+RLDVDTK++ LK +FF +R++ K
Sbjct: 264 IGRLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSFFLVREDTKA 323
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
A LL+++R + QT++FV+TKHH E+L+ L +G+ + Y +D ARKI++++F
Sbjct: 324 AVLLHLLRTVVRPQDQTVVFVATKHHTEYLSELLTTQGVSCAHIYSALDPTARKINLAKF 383
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
K LIVTD+AARG+DIPLLDNV+N+ FP K K+F+HRVGR ARAGR+GTA+S V
Sbjct: 384 THGKCSTLIVTDLAARGLDIPLLDNVVNYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAP 443
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEE--EVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDL 430
+++ YLLDLHLFL + + A E +DGV+ GR PQ+V+D
Sbjct: 444 DEVPYLLDLHLFLGRALTPARPHEGSSGAGSVDGVL--------------GRVPQSVVDD 489
Query: 431 VSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK--DLPREGLHPMFKN 488
+R + +S +L L R NA + Y +++P S ESI+R K DL GLHP+F +
Sbjct: 490 EESSLRGTLAASLELRGLGRVADNAQQQYVRSRPAASPESIKRAKELDLAGLGLHPLFSS 549
Query: 489 VLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKII 548
E EL L + ++ +R + TI E + + PSSQ VM+ KR K I
Sbjct: 550 RFEERELQRLKLVDSIRNYRSRATIFEINASS------RDPSSQ---VMRAKRQKDRKAI 600
Query: 549 NLVHQQRSSKSMEKEVEPEADSLMAKEIKET----------------------------- 579
+ Q + +++ A S A + ++
Sbjct: 601 SSFQQ--GLQGRQEDTAGPAPSCPASQEEKPEEEEEEAAGESVEDVFTEVMDRKRPQPGP 658
Query: 580 -HGSKRKAKT--FKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGG 636
G+KR+ + +D+E+++ P + E GLS+ D+G ++ AVLDL+ D++
Sbjct: 659 DRGAKRRREEARHRDQEFYVPYRPKDFDSERGLSIGGDRGAFEQQVAGAVLDLMGDEAQN 718
Query: 637 LQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKK 695
L + +Q WD++ K+++ G+ K +KTESG + ++ K +Y+KWK++ +K
Sbjct: 719 LTRGRQQLKWDRKKKRFV----GQSGQEDKKKIKTESGRYISSSYKRDLYQKWKQK--QK 772
Query: 696 VYLKGASNEGNAEETTSVPGGRHLGGNNRKFRGGKNQQRS--VPNAHVCSEIKDLDQVRK 753
+ + + +EG +++ GG + + G +Q RS P V SE+K Q+ K
Sbjct: 773 IDDRDSEDEGTSQQRGPE----RRGGKRGRGQQGASQPRSPGTPAGRVRSELKTKQQILK 828
Query: 754 ERQKKADRIAFMK 766
+R ++A+++ F++
Sbjct: 829 QR-RRAEKLRFLQ 840
>gi|115762569|ref|XP_792708.2| PREDICTED: ATP-dependent RNA helicase DDX54-like
[Strongylocentrotus purpuratus]
Length = 889
Score = 576 bits (1485), Expect = e-161, Method: Compositional matrix adjust.
Identities = 333/765 (43%), Positives = 479/765 (62%), Gaps = 73/765 (9%)
Query: 5 SSKAELKRR----EKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSG 60
SS A++ R ++ +KK KSGGF+S+ LS VF+ I +KGYK+PTPIQRK +P+I+ G
Sbjct: 51 SSDADIDTRALVKQQNRKKKKSGGFQSMGLSHAVFKGIMKKGYKIPTPIQRKCIPIIMEG 110
Query: 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120
DVV MARTGSGKTAAFL+PML+RL + Q G RALILSPTR+LALQTLKFTKEL RYT
Sbjct: 111 QDVVGMARTGSGKTAAFLLPMLERLQRRSAQSGARALILSPTRELALQTLKFTKELARYT 170
Query: 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL 180
DLR +++GGD M+ QF L +NPDI+IAT GRL+H L E+ D+ L VEYVVFDEAD L
Sbjct: 171 DLRSEVILGGDRMDDQFAALHENPDILIATRGRLLHVLVEM-DLKLMQVEYVVFDEADRL 229
Query: 181 FGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLK 240
F MGFAEQL++IL +L +NRQTLLFSATLP +L EFA AGL +P LVRLDV++KIS LK
Sbjct: 230 FEMGFAEQLNEILSRLPDNRQTLLFSATLPKSLVEFASAGLSEPVLVRLDVESKISEQLK 289
Query: 241 LAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDM 300
F R +K A LL+++R+ I +Q T++F++T+HHV+++ L + G+ + Y +
Sbjct: 290 SMFLYTRSNDKTAVLLHLLRDVIQPNQLTVVFLATRHHVDYVRELLEQAGISNTYIYSAL 349
Query: 301 DQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARA 360
DQ ARKI+V++F +KT L+VTD+AARGIDIP+LD VIN+ FP KPK+FVHRVGR ARA
Sbjct: 350 DQAARKINVAKFTHKKTHILLVTDIAARGIDIPMLDVVINFHFPGKPKLFVHRVGRVARA 409
Query: 361 GRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIY 420
GRTGTA+S V ++++YL+DLHLFL K I +++ K + +G+
Sbjct: 410 GRTGTAYSMVAPDELSYLIDLHLFLGKDIAFFKNDD-----------KTSEEDVSGK--L 456
Query: 421 GRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDL-PR 479
GR PQ+V+D +R + S+DL +L+R NA + Y +++PLPS S++R K++ P
Sbjct: 457 GRVPQSVVDDEESVLRNLHKMSSDLTNLKRPAFNAMKNYLRSRPLPSPASVKRSKEIDPM 516
Query: 480 E-GLHPMFKNVLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMK 538
+ HPM+ E + + +K ++P+ TI E + S H VM+
Sbjct: 517 DIAYHPMYGIQDSDLESTRVQLVDEVKGYKPRATIFEINSTSKNSAH---------GVMQ 567
Query: 539 KKRAVHEKIIN-----LVHQQRSSKSMEK---EVEPEADSLMA---------KEIKETHG 581
KR +H +IN L +++ ++M + E E +AD+ A K+ K+ G
Sbjct: 568 SKRRLHNTVINRNVQRLEEKKKEEQAMRRVAMETEDDADAENAFSVVIGPAGKKRKDVGG 627
Query: 582 SKRKAKTF-----KDEEYFISSVPTNHHMEAGLSVRSD---QGFGLNRLEAAVLDLVADD 633
+ + + F +DE FI+ + E GLS+ ++ Q G AVLD D+
Sbjct: 628 ASQGSLPFTQSAVRDENVFIAYTAPDKQQEQGLSIENNFEKQAAG------AVLDFTQDE 681
Query: 634 SGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKW--KE 690
S ++KQ+Q W+++ KK++ +G + K++ TESG + A+ K IYK+W K
Sbjct: 682 SREMRKQQQRVKWERKKKKFV--GDGGKDGKQKKIM-TESGKYISASYKKNIYKEWLNKS 738
Query: 691 RSHKKVYLKGASNEGNAEET----TSVPGGRHLGGNNRKFRGGKN 731
++ + + + S+ + + + S+ G R GN RGGK+
Sbjct: 739 KADSRDHHQSDSDNEDGDRSGLNKGSITGNRVRYGNG---RGGKH 780
>gi|259155174|ref|NP_001158829.1| ATP-dependent RNA helicase DDX54 [Salmo salar]
gi|223647616|gb|ACN10566.1| ATP-dependent RNA helicase DDX54 [Salmo salar]
Length = 875
Score = 575 bits (1483), Expect = e-161, Method: Compositional matrix adjust.
Identities = 318/715 (44%), Positives = 455/715 (63%), Gaps = 65/715 (9%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
R + KKK KSGGF+S+ LS VF+ + +KGYKVPTPIQRKT+P+IL G D+VAMARTGSG
Sbjct: 67 RAQNKKKKKSGGFQSMGLSYPVFKGVMKKGYKVPTPIQRKTIPVILDGKDMVAMARTGSG 126
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTAAFLVPM ++L Q G RALIL+PTR+LALQT+KFTKELG++T L+ +L++GGD
Sbjct: 127 KTAAFLVPMFEKLKVPQAQTGARALILTPTRELALQTMKFTKELGKFTGLKTALILGGDR 186
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
M+ QF L +NPDIII TPGRLMH + E+ ++ L+SVEYVVFDEAD LF MGFA+QL +I
Sbjct: 187 MDDQFAALHENPDIIIGTPGRLMHVVMEM-NLKLQSVEYVVFDEADRLFEMGFADQLQEI 245
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
+ +L +NRQTLLFSATLP L EFA+AGL +P L+RLDVD+K+S LKL+FF LR ++K
Sbjct: 246 IRRLPDNRQTLLFSATLPKLLVEFARAGLTEPVLIRLDVDSKLSELLKLSFFHLRMDDKP 305
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
A LL+++R +QT++FV+TKHHVE+L L EG+E + Y +DQ ARKI++ +F
Sbjct: 306 ALLLHLLRNVAKPQEQTVVFVATKHHVEYLKELLSSEGVECAYIYSALDQTARKINIGKF 365
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
RK M LIVTDVAARGIDIPLLDNVIN++FP K K+F+HRVGR ARAGR G A+S V +
Sbjct: 366 VHRKAMVLIVTDVAARGIDIPLLDNVINYNFPSKAKLFLHRVGRVARAGRCGAAYSLVCT 425
Query: 373 EDMAYLLDLHLFLSKPIR-AAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLV 431
+++ ++ DLHLFL +P++ A P ++ + DGV +GR PQ+++D
Sbjct: 426 DEIPFVYDLHLFLGRPLQLATPDHQQ---ESDGV--------------FGRVPQSILDDE 468
Query: 432 SDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKD--LPREGLHPMFKNV 489
++ ++S DL +L+R NA++ Y K++P+PS ES +R K+ LP +HP+ +
Sbjct: 469 ESQLITAHENSHDLQNLRRIADNAYKQYIKSRPMPSPESFKRVKNTELPSMAVHPLLGSG 528
Query: 490 LEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIIN 549
LE EL L + +K ++ + TI E + + + VM+ KR+ ++++
Sbjct: 529 LEKMELERLQMVDCIKGYKARATIFEINSNSKTNASV---------VMRAKRSRDMRLVD 579
Query: 550 LVHQQRSSKSMEKE----VEP------EADSLMAKE------IKETHGSKRK-------- 585
+ Q++ + E V P AD ++E E G KR+
Sbjct: 580 MFTQKKEVLAAEGRYHVPVTPLPSTHHTADQEDSEEEDFQGVFSEVVGGKRRKPQGDGDT 639
Query: 586 --------AKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGL 637
+T +DEE +I P + + E GLS+ ++ + AVLDL+ D+ L
Sbjct: 640 ERPDRKKTKQTGRDEENYIPYRPKDFNSERGLSLGTEGTTFEQQASTAVLDLMGDEGDRL 699
Query: 638 QKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKV-KATKTGIYKKWKER 691
+ K + WD++ K+++K E + K +TESG + K Y++WK++
Sbjct: 700 NQHKHMMKWDRKRKRFVKETGKE--ADQKKKKRTESGQMINNKNKKNFYEEWKKK 752
>gi|326929996|ref|XP_003211139.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase
DDX54-like [Meleagris gallopavo]
Length = 831
Score = 573 bits (1477), Expect = e-160, Method: Compositional matrix adjust.
Identities = 335/784 (42%), Positives = 474/784 (60%), Gaps = 73/784 (9%)
Query: 16 QKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTA 75
Q KK KSGGF+S+ LS VF+ + +KGYKVPTPIQRKT+P+IL G DVVAMARTGSGKTA
Sbjct: 53 QNKKKKSGGFQSMGLSYPVFKGVMKKGYKVPTPIQRKTIPVILRGRDVVAMARTGSGKTA 112
Query: 76 AFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMES 135
FL+PM +RL P G RALILSPTR+LALQTLKFTKELG++T L+ +L++GGD ME
Sbjct: 113 CFLLPMFERLKAPSP-SGARALILSPTRELALQTLKFTKELGKFTGLKTALVLGGDKMED 171
Query: 136 QFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQ 195
QF L +NPDIIIATPGRL+H E+ ++ L S+EYVVFDEAD LF MGFAEQL +IL +
Sbjct: 172 QFAALHENPDIIIATPGRLVHVAVEM-NLKLHSMEYVVFDEADRLFEMGFAEQLQEILAR 230
Query: 196 LSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAAL 255
L + QT+LFSATLP L EFA+AGL +P L+RLDV++K+S LKLAFF +R ++K A L
Sbjct: 231 LPGSHQTVLFSATLPKLLVEFARAGLTEPMLIRLDVESKLSEQLKLAFFHVRGDDKPAVL 290
Query: 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRAR 315
L+++R + QT++FV+TKHH E+L L +G+ + Y +DQ ARKI++++F
Sbjct: 291 LHLLRSVVKPQDQTVVFVATKHHTEYLKELLTSQGICCTHIYSSLDQTARKINIAKFAHG 350
Query: 316 KTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDM 375
K L+VTDVAARG+DIP+LDNVIN+ FP K K+F+HRVGR ARAGR+GTA+S V ++M
Sbjct: 351 KCQVLLVTDVAARGLDIPMLDNVINYSFPAKSKLFLHRVGRVARAGRSGTAYSLVAPDEM 410
Query: 376 AYLLDLHLFLSKPIRAAPSEEEV--LLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSD 433
Y+ DLHLFL +P+ A S V D DGV+ ++ Q++ + E L++D
Sbjct: 411 PYIFDLHLFLGRPLILAESSCTVPGAADADGVLGRVPQSLVDDEECL---------LLTD 461
Query: 434 RVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK--DLPREGLHPMFKNVLE 491
+ S +L SL+R NA + Y +++P PS ESI+R K D+ + G+HP+F E
Sbjct: 462 H-----EGSLELQSLRRVADNAQKQYLRSRPXPSPESIKRVKEMDMSQLGIHPLFSAHFE 516
Query: 492 GGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKK----RAVHEKI 547
EL L + +KA++ K TI E A H S +M+ K RA+ EK
Sbjct: 517 DTELERLKLVDSIKAYKSKATIFEINATA----HTMASS-----IMRSKRRHDRALIEKF 567
Query: 548 INLVHQQRSSKSMEKEVEP----------------EADSLMA-----KEIKETHGSKRKA 586
++R++ + + P E S M + G+++K
Sbjct: 568 QRGQEEKRAAALKGQGLHPATPKPEEEEEEEENLQEVFSTMVGWKRKRSRAAEDGARKKP 627
Query: 587 K--TFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVY 644
+ +DE+++I P + E GLSV + + AVLDL+ D+ L + KQ+
Sbjct: 628 QPPAQRDEDFYIPYRPKDFESERGLSVGGEGSAFEQQAAGAVLDLMGDEGHNLNRSKQLL 687
Query: 645 HWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASN 703
WD++ K+++ G+ K V+TESG + ++ K +Y+KWK+++ + N
Sbjct: 688 KWDRKKKRFV----GQTGQEEKKKVRTESGRYISSSYKNNLYEKWKQKNKVDERDEDEEN 743
Query: 704 EGNAEETTSVPGGRHLGGNNRKFRGGKNQQRSVPNAHVCSEIKDLDQVRKERQKKADRIA 763
+G E+ G+H R G QR V SE+K+ Q+ K+R+ A +
Sbjct: 744 QGGREQYR----GKH--------RRGHAPQRPPTQGKVRSELKNKQQILKQRKAAAKQRF 791
Query: 764 FMKG 767
+G
Sbjct: 792 LQRG 795
>gi|426247766|ref|XP_004017647.1| PREDICTED: ATP-dependent RNA helicase DDX54 [Ovis aries]
Length = 864
Score = 572 bits (1474), Expect = e-160, Method: Compositional matrix adjust.
Identities = 341/787 (43%), Positives = 477/787 (60%), Gaps = 79/787 (10%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
R + KKK KSGGF+S+ LS VF+ I +KGYKVPTPIQRKT+P+IL G DVVAMARTGSG
Sbjct: 86 RAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPMILDGKDVVAMARTGSG 145
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTA FL+PM +RL H Q G RALILSPTR+LALQT+KFTKELG++T L+ +L++GGD
Sbjct: 146 KTACFLIPMFERLKTHSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDK 205
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
ME QF L +NPDIIIATPGRL+H E+ ++ L+SVEYVVFDEAD LF MGFAEQL +I
Sbjct: 206 MEDQFAALHENPDIIIATPGRLVHVAVEM-NLKLQSVEYVVFDEADRLFEMGFAEQLQEI 264
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
+G+L QT+LFSATLP L EFA+AGL +P L+RLDVD+K++ LK +FF +R++ K
Sbjct: 265 IGRLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDSKLNEQLKTSFFLVREDAKA 324
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
A LL+++R + QT++FV+TKHH E+L+ L +G+ + Y +DQ ARKI+++RF
Sbjct: 325 AVLLHLLRNVVRPQDQTVVFVATKHHAEYLSELLATQGVSCAHIYSALDQTARKINLARF 384
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
K LIVTD+AARG+DIPLLDNVIN+ FP K K+F+HRVGR ARAGR+GTA+S V
Sbjct: 385 THGKCSALIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAP 444
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVS 432
+++ YLLDLHLFL + + A EE +GE PQT +
Sbjct: 445 DEVPYLLDLHLFLGRALTLARPPEE----------------PSGED-----PQT----IH 479
Query: 433 DRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK--DLPREGLHPMFKNVL 490
+R +++S +L L R NA + Y +++P PS ESI+R K DL GLHP+F +
Sbjct: 480 CGLRTSLEASLELRGLSRVADNAQQQYVRSRPAPSPESIKRAKGLDLAGLGLHPLFSSRF 539
Query: 491 EGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKII-- 548
+ EL L + ++ +R + TI E A S+ L SSQ VM+ KR K I
Sbjct: 540 QQEELQRLRLVDSIRNYRSRATIFEIN---ASSRDL---SSQ---VMRAKREKDRKAIAS 590
Query: 549 -----------------NLVHQQRSSKSMEKEVEPEADSLMAKEI---KETHGSKRKAKT 588
+L Q E+ V + + + + ++ G R+AK
Sbjct: 591 FQQGRQEQQEGPAGPAPSLPAPQEEQPEKEEVVGESVEDVFTEVVGRKRQQPGPHREAKR 650
Query: 589 F------KDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQ 642
+D+ ++I P + E GLSV D G ++ AVLDL+ D++ L K +Q
Sbjct: 651 RREEARQRDQAFYIPYRPKDFDSERGLSVGGDGGAFEQQVTGAVLDLMGDEAQSLTKGRQ 710
Query: 643 VYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGA 701
WD++ K+++ G+ K +KTESG + ++ K +Y+KWK++ K
Sbjct: 711 QLKWDRKKKRFV----GQSGQEDKKKIKTESGRYISSSYKRDLYQKWKQKQ------KID 760
Query: 702 SNEGNAEETTSVPGGRHLGGNNRKFRGGKNQQRS--VPNAHVCSEIKDLDQVRKERQKKA 759
+ EET G GG + + + G +Q R+ P V SE+K Q+ K+R ++A
Sbjct: 761 DRDSEEEETFDRRGPERRGGKHGRGQAGASQPRTPGTPAGRVRSELKTKQQILKQR-RRA 819
Query: 760 DRIAFMK 766
++ F++
Sbjct: 820 QKMRFLQ 826
>gi|348551186|ref|XP_003461411.1| PREDICTED: ATP-dependent RNA helicase DDX54-like isoform 2 [Cavia
porcellus]
Length = 876
Score = 572 bits (1473), Expect = e-160, Method: Compositional matrix adjust.
Identities = 325/728 (44%), Positives = 454/728 (62%), Gaps = 62/728 (8%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
R + KKK KSGGF+S+ LS VF+ I +KGYKVPTPIQRKT+P+IL G DVVAMARTGSG
Sbjct: 86 RAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSG 145
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTA FL+PM +RL Q G RAL+LSPTR+LALQT+KFTKELG++T L+ +L++GGD
Sbjct: 146 KTACFLIPMFERLKARSGQTGARALVLSPTRELALQTMKFTKELGKFTGLKTALILGGDR 205
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
ME QF L +NPDIIIATPGRL+H E+ ++ L+SVEYVVFDEAD LF MGFAEQL +I
Sbjct: 206 MEDQFAALHENPDIIIATPGRLVHVAVEM-NLKLQSVEYVVFDEADRLFEMGFAEQLQEI 264
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
+ +L QT+LFSATLP L EFA+AGL +P L+RLDVD K++ LK +F +R++ K
Sbjct: 265 ISRLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDAKLNEQLKTSFLLVREDAKA 324
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
A LL+++R + QT++FV+TKHH E+L+ L + + + Y +D ARKI+++RF
Sbjct: 325 AVLLHLLRTAVRPQDQTVVFVATKHHCEYLSELLSTQRVSCAHIYSALDPTARKINLARF 384
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
K LIVTD+AARG+DIPLLDNVIN+ FP K K+F+HRVGR ARAGR+GTA+S V+
Sbjct: 385 THGKCSALIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVSP 444
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVS 432
+++ YLLDLHLFL + + A EE +DGV+ GR PQTV+D
Sbjct: 445 DEVPYLLDLHLFLGRSLTLARPSEEPAGGVDGVL--------------GRVPQTVVDDED 490
Query: 433 DRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREG--LHPMFKNVL 490
+R +++S +L SL R NA + Y +++P PS ESI+R K+L G LHP+F +
Sbjct: 491 SGLRAALEASLELRSLGRVADNAQQQYVRSRPAPSPESIKRAKELDLAGLSLHPLFSSRF 550
Query: 491 EGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINL 550
E EL L + +K +R + TI E A S+ L SSQ VM+ KR + I
Sbjct: 551 EEAELQRLRLVDGIKQYRSRATIFEIN---ASSRDL---SSQ---VMRAKRQKDGRAIAR 601
Query: 551 VHQQRSSKS-----------MEKEVEP---EADSLMAKE--IKETHGSKR---------- 584
+ + + + KE +P E D+ + E E G KR
Sbjct: 602 FQRGQQERQEGPATPAPACPVPKEEQPLGREEDAGQSVEDIFTEVVGQKRLQPGPDRGAK 661
Query: 585 ---KAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQK 641
+ +D+E+++ P + E GLSV G ++ AVLDL+ D++ L + +
Sbjct: 662 RRREEARRRDQEFYVPYRPKDFDSEQGLSVGGATGAFEQQVAGAVLDLMGDEAQNLTRSR 721
Query: 642 QVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKG 700
Q WD++ K+++ G+ K +KTESG V ++ K +Y+KWK++ +K+ +
Sbjct: 722 QQLKWDRKKKRFV----GQSGQEDKKKIKTESGCYVSSSYKRDLYQKWKQK--QKIEDRD 775
Query: 701 ASNEGNAE 708
+ EG ++
Sbjct: 776 SEEEGPSD 783
>gi|348551184|ref|XP_003461410.1| PREDICTED: ATP-dependent RNA helicase DDX54-like isoform 1 [Cavia
porcellus]
Length = 875
Score = 572 bits (1473), Expect = e-160, Method: Compositional matrix adjust.
Identities = 325/728 (44%), Positives = 454/728 (62%), Gaps = 62/728 (8%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
R + KKK KSGGF+S+ LS VF+ I +KGYKVPTPIQRKT+P+IL G DVVAMARTGSG
Sbjct: 86 RAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSG 145
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTA FL+PM +RL Q G RAL+LSPTR+LALQT+KFTKELG++T L+ +L++GGD
Sbjct: 146 KTACFLIPMFERLKARSGQTGARALVLSPTRELALQTMKFTKELGKFTGLKTALILGGDR 205
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
ME QF L +NPDIIIATPGRL+H E+ ++ L+SVEYVVFDEAD LF MGFAEQL +I
Sbjct: 206 MEDQFAALHENPDIIIATPGRLVHVAVEM-NLKLQSVEYVVFDEADRLFEMGFAEQLQEI 264
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
+ +L QT+LFSATLP L EFA+AGL +P L+RLDVD K++ LK +F +R++ K
Sbjct: 265 ISRLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDAKLNEQLKTSFLLVREDAKA 324
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
A LL+++R + QT++FV+TKHH E+L+ L + + + Y +D ARKI+++RF
Sbjct: 325 AVLLHLLRTAVRPQDQTVVFVATKHHCEYLSELLSTQRVSCAHIYSALDPTARKINLARF 384
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
K LIVTD+AARG+DIPLLDNVIN+ FP K K+F+HRVGR ARAGR+GTA+S V+
Sbjct: 385 THGKCSALIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVSP 444
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVS 432
+++ YLLDLHLFL + + A EE +DGV+ GR PQTV+D
Sbjct: 445 DEVPYLLDLHLFLGRSLTLARPSEEPAGGVDGVL--------------GRVPQTVVDDED 490
Query: 433 DRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREG--LHPMFKNVL 490
+R +++S +L SL R NA + Y +++P PS ESI+R K+L G LHP+F +
Sbjct: 491 SGLRAALEASLELRSLGRVADNAQQQYVRSRPAPSPESIKRAKELDLAGLSLHPLFSSRF 550
Query: 491 EGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINL 550
E EL L + +K +R + TI E A S+ L SSQ VM+ KR + I
Sbjct: 551 EEAELQRLRLVDGIKQYRSRATIFEIN---ASSRDL---SSQ---VMRAKRQKDGRAIAR 601
Query: 551 VHQQRSSKS-----------MEKEVEP---EADSLMAKE--IKETHGSKR---------- 584
+ + + + KE +P E D+ + E E G KR
Sbjct: 602 FQRGQQERQEGPATPAPACPVPKEEQPLGREEDAGQSVEDIFTEVVGQKRLQPGPDRGAK 661
Query: 585 ---KAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQK 641
+ +D+E+++ P + E GLSV G ++ AVLDL+ D++ L + +
Sbjct: 662 RRREEARRRDQEFYVPYRPKDFDSEQGLSVGGATGAFEQQVAGAVLDLMGDEAQNLTRSR 721
Query: 642 QVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKG 700
Q WD++ K+++ G+ K +KTESG V ++ K +Y+KWK++ +K+ +
Sbjct: 722 QQLKWDRKKKRFV----GQSGQEDKKKIKTESGCYVSSSYKRDLYQKWKQK--QKIEDRD 775
Query: 701 ASNEGNAE 708
+ EG ++
Sbjct: 776 SEEEGPSD 783
>gi|427785439|gb|JAA58171.1| Putative atp-dependent rna helicase ddx54 [Rhipicephalus
pulchellus]
Length = 816
Score = 572 bits (1473), Expect = e-160, Method: Compositional matrix adjust.
Identities = 327/782 (41%), Positives = 475/782 (60%), Gaps = 78/782 (9%)
Query: 19 KSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78
K KSGGF+++ LS + + I ++GYK PTPIQRK +P++L G DVVAMARTGSGKTAAFL
Sbjct: 52 KKKSGGFQAMGLSHAILKGILKRGYKQPTPIQRKAIPVVLEGRDVVAMARTGSGKTAAFL 111
Query: 79 VPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138
VP+L+RL P G RALILSPTR+LALQT KF KELG++TDLR ++++GGDSME QFE
Sbjct: 112 VPILERLGGRSPHTGPRALILSPTRELALQTHKFAKELGKFTDLRSTVILGGDSMEDQFE 171
Query: 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198
+ +NPD++IATPGR +H + E+ ++ L SV+YVVFDEAD LF MGF EQL ++L +L E
Sbjct: 172 AIHENPDLLIATPGRFLHVVMEM-NLRLNSVKYVVFDEADRLFEMGFQEQLTEVLHRLPE 230
Query: 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258
RQTLLFSATLP L +FA+AGL +P L+RLDV+ K+S LK + R +K A LL++
Sbjct: 231 GRQTLLFSATLPRLLVDFARAGLSEPVLIRLDVEDKLSEQLKTVYVMCRNNDKTAILLHL 290
Query: 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
++ I D+ T IFV+T+HH E+L + G+ + Y +DQ AR+I+VS+F+AR+
Sbjct: 291 LKHIIKPDELTFIFVATRHHAEYLRDILERAGVTCTYVYSSLDQAARRINVSKFQARQVP 350
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
++VTDVAARG+DIPLLDNVIN+ FPP+PK+FVHRVGR ARAGRTGTA+S V ++ YL
Sbjct: 351 VMLVTDVAARGLDIPLLDNVINYSFPPRPKLFVHRVGRVARAGRTGTAYSLVAPDEAPYL 410
Query: 379 LDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREI 438
LDLHLFL + L + S +++ + GR PQTVID + +R +
Sbjct: 411 LDLHLFLGRE-----------LSLSNANSSPEES-----GLCGRVPQTVIDEELELLRCM 454
Query: 439 IDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGL--HPMFKNVLEGGELM 496
S DL +++R C+NA Y K++P PS ES++R K ++ L HP+F+ V E
Sbjct: 455 QQQSVDLQNMERVCSNAMIQYLKSRPAPSSESVKRMKQYLKDDLPPHPLFQ-VKSTDEDT 513
Query: 497 ALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRS 556
+ +K F+P TI E G +S VMK KR H+ +I + R
Sbjct: 514 RAKLLQGMKKFKPASTIFEI-GNTGKSAAFA--------VMKNKRRKHDNLIERL-SARG 563
Query: 557 SKSMEKE------VEPEADSLMA--KEIKE----------------------------TH 580
++ E+E P + ++MA +EI++ T
Sbjct: 564 AQVAEEEKPAAKCSNPSSSAVMAGEEEIEQAFATVINNNTKVPSRKGAKGSAASQSAATK 623
Query: 581 GSKRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQ 640
K K +FKDE+++I ++ H E GL + ++ F + AVLDL DD L+KQ
Sbjct: 624 SKKAKPASFKDEQFYIPHFASDFHSEKGLEL--EKTFE-QQASQAVLDLTGDDDKYLRKQ 680
Query: 641 KQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLK 699
K WD++ K++++ E K ++TESGA + A+ K+ +YK+W++++ +
Sbjct: 681 KSALKWDRKRKRFVR----EDSDPKKKKIRTESGAWIPASYKSDVYKQWRKKAQMDAQDE 736
Query: 700 GASNEGNAEETTSVPGGRHLGGNNR--KFRGGKNQQRSVPNAHVCSEIKDLDQVRKERQK 757
G+ ++ E + + G + + +R K G +Q+ P H E+K +++ K R++
Sbjct: 737 GSGDDEEGEAGSGL-GKQKVSACDRLGKRHSGPARQKG-PKKHFRRELKTKEEILKTRKR 794
Query: 758 KA 759
KA
Sbjct: 795 KA 796
>gi|403281618|ref|XP_003932278.1| PREDICTED: ATP-dependent RNA helicase DDX54 [Saimiri boliviensis
boliviensis]
Length = 879
Score = 571 bits (1471), Expect = e-160, Method: Compositional matrix adjust.
Identities = 336/789 (42%), Positives = 473/789 (59%), Gaps = 68/789 (8%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
R + KKK KSGGF+S+ LS VF+ I +KGYKVPTPIQRKT+P+IL G DVVAMARTGSG
Sbjct: 86 RAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSG 145
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTA FL+PM +RL H Q G RALILSPTR+LALQTLKFTKELG++T L+ +L++GGD
Sbjct: 146 KTACFLLPMFERLKTHSAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDR 205
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
ME QF L +NPDIIIATPGRL+H E+ ++ L+SVEYVVFDEAD LF MGFAEQL +I
Sbjct: 206 MEDQFAALHENPDIIIATPGRLVHVAVEM-NLKLQSVEYVVFDEADRLFEMGFAEQLQEI 264
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
+ +L QT+LFSATLP L EFA+AGL +P L+RLDVD K++ LK +FF +R++ K
Sbjct: 265 IARLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDAKLNEQLKTSFFLVREDTKA 324
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
A LL+++R + QT++FV+TKHH E+L L + + + Y +D ARKI++++F
Sbjct: 325 AVLLHLLRNVVRPQDQTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKF 384
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
K LIVTD+AARG+DIPLLDNVIN+ FP K K+F+HRVGR ARAGR+GTA+S V
Sbjct: 385 TLGKCSALIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAP 444
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVS 432
+++ YLLDLHLFL +P+ A EE A + + GR PQ+V+D
Sbjct: 445 DEIPYLLDLHLFLGRPLALALPLEE------------PSGAAGVDGVLGRVPQSVVDEED 492
Query: 433 DRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK--DLPREGLHPMFKNVL 490
++ +++S +L L R NA + Y +++P PS ESI+R K DL GLHP+F +
Sbjct: 493 GGLQSTLEASLELRGLARVADNAQQQYVRSRPAPSPESIKRAKELDLAGLGLHPLFSSRF 552
Query: 491 EGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINL 550
E EL L + ++ +R + TI E A S+ L SQ VM+ KR K I
Sbjct: 553 EEEELQRLRLVDSIRNYRSRATIFEIN---ASSRDL---CSQ---VMRAKRQKDRKAIAR 603
Query: 551 VHQQRSSKSMEKEVEPEADSLMAKEIKETH------------------------------ 580
Q R + +E P +L ++E
Sbjct: 604 FQQGRQGRQEHQE-GPVGPALSRPALQEKQPEEEEEAGESVEDVFSEVLGRKRPRSGLDR 662
Query: 581 GSKRK--AKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQ 638
G+KR+ A +D+E++I P + E GLSV + G + AVLDL+ D++ L
Sbjct: 663 GAKRQREAAWQRDQEFYIPYRPKDFDSERGLSVGGEGGAFEQQAAGAVLDLMGDETQNLT 722
Query: 639 KQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVY 697
+ +Q WD++ K+++ G+ K +KTESG + ++ K +Y+KWK++ +K+
Sbjct: 723 RGRQQLKWDRKKKRFV----GQSGQEDKKKIKTESGRYISSSYKRDLYQKWKQK--QKID 776
Query: 698 LKGASNEGNAEETTSVPGGRHLGGNNRKFRGGKNQQRSVPNAHVCSEIKDLDQVRKERQK 757
+ + EG ++ R G R + + P V E+K Q+ K+R +
Sbjct: 777 DRDSDEEGASDRRGPE---RRGGKRGRGQGASQPRAPGAPAGRVRPELKTKQQILKQR-R 832
Query: 758 KADRIAFMK 766
+A ++ F++
Sbjct: 833 RAQKLRFLQ 841
>gi|255072735|ref|XP_002500042.1| predicted protein [Micromonas sp. RCC299]
gi|226515304|gb|ACO61300.1| predicted protein, partial [Micromonas sp. RCC299]
Length = 523
Score = 570 bits (1470), Expect = e-160, Method: Compositional matrix adjust.
Identities = 263/467 (56%), Positives = 354/467 (75%), Gaps = 2/467 (0%)
Query: 11 KRREKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTG 70
+RR+ +K KSK GGFES+++ P VFRAIKRKGY++PTPIQRK +P+ LSGADVVAMARTG
Sbjct: 59 RRRKAEKAKSKGGGFESMDILPEVFRAIKRKGYRIPTPIQRKAIPVALSGADVVAMARTG 118
Query: 71 SGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGG 130
SGKTAAFL+P+L +L QH + G RA++LSPTR+LALQT KF +EL ++TDLR +VGG
Sbjct: 119 SGKTAAFLIPVLHKLRQHSLKAGARAVVLSPTRELALQTYKFAQELSKFTDLRCVCVVGG 178
Query: 131 DSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLH 190
DSME+QF++LA NPD+++ATPGRL+HH+ E+ S++SV +VV DEAD L MGFA+QL
Sbjct: 179 DSMEAQFDDLASNPDLLVATPGRLLHHVEEISGFSIRSVSHVVLDEADRLLEMGFADQLR 238
Query: 191 KILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE 250
I+ Q+++ RQ LLFSAT+PSALAEF + GL+DP ++RLD + K+SPDLKL+F +RQ+E
Sbjct: 239 DIMKQVADQRQCLLFSATMPSALAEFVRVGLKDPQVIRLDAEMKVSPDLKLSFTVMRQDE 298
Query: 251 KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVS 310
K +LL+ +RE + +QQT++F +T+HHVE L + EG+ S YG MD ARK+H+
Sbjct: 299 KIPSLLFFLREVVPENQQTVVFTATRHHVELLVTVLESEGITVSAVYGSMDMAARKLHIG 358
Query: 311 RFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFV 370
+FR RKT ++VTDVAARGIDIPLLDNV+N+DFPP+PK+FVHRVGR ARAGRTG A S +
Sbjct: 359 KFRNRKTSVMVVTDVAARGIDIPLLDNVVNFDFPPRPKLFVHRVGRVARAGRTGVAHSLL 418
Query: 371 TSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDL 430
E+M +L+DLHLFL + + AAP + D D+A ++ G P T +DL
Sbjct: 419 VKEEMGFLVDLHLFLGRSLVAAPVKPPE--SRDEARQIADEADEAQRSVVGIIPPTSLDL 476
Query: 431 VSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDL 477
V DRVRE+ D+ +L+ L+R C NA++LY +T+ + ES+ RG +L
Sbjct: 477 VQDRVRELFDARTELDGLRRACDNAYKLYQRTRGSAANESVARGAEL 523
>gi|363740165|ref|XP_003642273.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX54
[Gallus gallus]
Length = 858
Score = 570 bits (1468), Expect = e-159, Method: Compositional matrix adjust.
Identities = 335/785 (42%), Positives = 486/785 (61%), Gaps = 61/785 (7%)
Query: 16 QKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTA 75
Q KK KSGGF+S+ LS VF+ + +KGYKVPTPIQRKT+P+IL G DVVAMARTGSGKTA
Sbjct: 65 QNKKKKSGGFQSMGLSYPVFKGVMKKGYKVPTPIQRKTIPVILRGRDVVAMARTGSGKTA 124
Query: 76 AFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMES 135
FL+PM +RL P G RALILSPTR+LALQTLKFTKELG++T L+ +L++GGD ME
Sbjct: 125 CFLLPMFERLKAPSP-SGARALILSPTRELALQTLKFTKELGKFTGLKTALVLGGDKMED 183
Query: 136 QFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQ 195
QF L +NPDIIIATPGRL+H E+ ++ L+SVEYVVFDEAD LF MGFAEQL +IL +
Sbjct: 184 QFAALHENPDIIIATPGRLVHVAVEM-NLKLQSVEYVVFDEADRLFEMGFAEQLQEILAR 242
Query: 196 LSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAAL 255
L + QT+LFSATLP L EFA+AGL +P L+RLDV++K+S LKLAFF +R ++K A L
Sbjct: 243 LPGSHQTVLFSATLPKLLVEFARAGLTEPMLIRLDVESKLSEQLKLAFFHVRGDDKPAVL 302
Query: 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRAR 315
L+++R + QT++FV+TKHH E+L L +G+ + Y +DQ ARKI++++F
Sbjct: 303 LHLLRCVVKPQDQTVVFVATKHHTEYLKELLTSQGICCTHIYSSLDQTARKINIAKFAHG 362
Query: 316 KTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDM 375
K L+VTDVAARG+DIP+LDNVIN+ FP K K+F+HRVGR ARAGR+GTA+S V ++M
Sbjct: 363 KCQVLLVTDVAARGLDIPMLDNVINYSFPAKSKLFLHRVGRVARAGRSGTAYSLVAPDEM 422
Query: 376 AYLLDLHLFLSKPIRAAPSEEEV--LLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSD 433
Y+ DLHLFL +P+ A S V D DGV+ ++ Q++ + E L++D
Sbjct: 423 PYIFDLHLFLGRPLILAESXCTVPGAADADGVLGRVPQSLVDDEECL---------LLTD 473
Query: 434 RVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK--DLPREGLHPMFKNVLE 491
+ S +L SL+R NA + Y +++P PS ESI+R K DL + G+HP+F E
Sbjct: 474 H-----EGSLELQSLRRVADNAQKQYLRSRPGPSPESIKRVKEMDLSQLGIHPLFSAHFE 528
Query: 492 GGELMALAFSERLKAFRPKQTILEAEGEA---------ARSKHLQGPSSQWVDVMKKKRA 542
EL L + +KA++ K TI E A ++ +H + ++ ++KRA
Sbjct: 529 DTELERLKLVDSIKAYKSKATIFEINSTARTLASSIMRSKRQHDRPLIEKFQRGQEEKRA 588
Query: 543 VHEKIINL---VHQQRSSKSMEKEVEPEADSLMAKEIKETH----GSKRKAK--TFKDEE 593
K L + + E+ ++ +++ ++ K + G+++K + +DE+
Sbjct: 589 AALKGQGLHPATPRPEEEEGEEENLQEVFSTVVGRKRKRSRAAEDGARKKPQPPAQRDED 648
Query: 594 YFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKY 653
++I P + E GLSV + + AVLDL+ D+S L + KQ+ WD++ K++
Sbjct: 649 FYIPYRPKDFESERGLSVGGEGSAFEQQAAGAVLDLMGDESHNLNRSKQLLKWDRKKKRF 708
Query: 654 IKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNAEETTS 712
+ G+ K V+TESG + ++ K +Y+KWK+++ + N+G E+
Sbjct: 709 V----GQTGQEEKKKVRTESGRYISSSYKNNLYEKWKQKNKVDERDEDEDNQGGREQYR- 763
Query: 713 VPGGRHLGGNNRKFRGGKNQQRSV--------PNAH--VCSEIKDLDQVRKERQKKADRI 762
G+H G+ N+Q+S+ P A V SE+K+ Q+ K+R+ A +
Sbjct: 764 ---GKHRRGHGESL----NKQQSLYRPPSPQKPPAQGKVRSELKNKQQILKQRKAAAKQR 816
Query: 763 AFMKG 767
+G
Sbjct: 817 FLQRG 821
>gi|126324487|ref|XP_001378612.1| PREDICTED: ATP-dependent RNA helicase DDX54 [Monodelphis domestica]
Length = 895
Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust.
Identities = 321/708 (45%), Positives = 449/708 (63%), Gaps = 56/708 (7%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
R + KKK KSGGF+S+ LS VF+ I +KGYKVPTPIQRKT+P+IL G DVVAMARTGSG
Sbjct: 114 RAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSG 173
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTA FL+PM ++L H Q G RALILSPTR+LALQT+KFTKELG++T L+ +L++GGD
Sbjct: 174 KTACFLIPMFEKLKAHSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDK 233
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
ME QF L +NPDIIIATPGRLMH E+ ++ L+SV+Y VFDEAD LF MGFAEQL +I
Sbjct: 234 MEDQFAALHENPDIIIATPGRLMHVAVEM-NLKLQSVQYAVFDEADRLFEMGFAEQLQEI 292
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
+G+L E+ QT+LFSATLP L EFA+AGL +P L+RLDVDTK++ LK AFF +R+++K
Sbjct: 293 MGRLPEDHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTAFFHVRRDDKP 352
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
A LL+++R + QT++FV+TKH E+L L +G+ + Y +DQ ARKI+++RF
Sbjct: 353 AVLLHVLRNLVRPQDQTVVFVATKHEAEYLTELLTAQGVGCTHIYSALDQTARKINLARF 412
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
K LIVTDVAARG+DIPLLDNV+N++FP K K+F+HRVGR ARAGR+GTA+S V
Sbjct: 413 VHGKCSALIVTDVAARGLDIPLLDNVVNFNFPAKSKLFLHRVGRVARAGRSGTAYSLVAP 472
Query: 373 EDMAYLLDLHLFLSKPIR-AAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLV 431
+++ Y+ DLHLFL +P+ AAP+++ A A+G + GR P++V+D
Sbjct: 473 DEVPYVFDLHLFLDRPLALAAPNDKPS-----------GNAAADG--MLGRVPRSVVDDE 519
Query: 432 SDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPRE--GLHPMFKNV 489
R+ D+S++L SL+R NA + Y +++P PS ESI+R KDL GLHP+F +
Sbjct: 520 ECRLITDHDASSELQSLRRVAENAHKQYVRSRPGPSPESIKRAKDLDPTLLGLHPLFSSR 579
Query: 490 LEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIIN 549
E EL + + +K +R + TI E + + P SQ VM+ KR K I
Sbjct: 580 FEDDELERMKLVDSIKNYRARATIFEI------NTTTRDPGSQ---VMRAKRKRDHKAIT 630
Query: 550 LVHQQRSSK--------------------SMEKEVEPEADSLMAKEIKETHGSKRKAK-- 587
+ + + +E E + E G K+K K
Sbjct: 631 KFQKGQQERLRPQPGPPPPTPENQEEEEEGCVEEAFSEVLGPKRPRLAEGPGGKKKRKER 690
Query: 588 -TFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEA-AVLDLVADDSGGLQKQKQVYH 645
+ +D ++++ P + E GLSV QG + A AVLDL+ D++ L + +Q
Sbjct: 691 SSPQDADFYVPYRPKDFDSERGLSV-GGQGSAFEQQAAGAVLDLMGDETPTLARGRQQLK 749
Query: 646 WDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERS 692
WD++ K+++ G K +KTESG + ++ K +Y+KWK+++
Sbjct: 750 WDRKRKRFV----GSSGQEDKKKIKTESGRYISSSYKRDLYQKWKQKN 793
>gi|426374226|ref|XP_004053980.1| PREDICTED: ATP-dependent RNA helicase DDX54 [Gorilla gorilla
gorilla]
Length = 881
Score = 567 bits (1461), Expect = e-159, Method: Compositional matrix adjust.
Identities = 336/791 (42%), Positives = 474/791 (59%), Gaps = 70/791 (8%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
R + KKK KSGGF+S+ LS VF+ I +KGYKVPTPIQRKT+P+IL G DVVAMARTGSG
Sbjct: 86 RAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSG 145
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTA FL+PM +RL H Q G RALILSPTR+LALQTLKFTKELG++T L+ +L++GGD
Sbjct: 146 KTACFLLPMFERLKTHSAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDR 205
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
ME QF L +NPDIIIATPGRL+H E+ + L+SVEYVVFDEAD LF MGFAEQL +I
Sbjct: 206 MEDQFAALHENPDIIIATPGRLVHVAVEM-SLKLQSVEYVVFDEADRLFEMGFAEQLQEI 264
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
+ +L QT+LFSATLP L EFA+AGL +P L+RLDVDTK++ LK +FF +R++ K
Sbjct: 265 IARLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSFFLVREDTKA 324
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
A LL+++R + QT++FV+TKHH E+L L + + + Y +D ARKI++++F
Sbjct: 325 AVLLHLLRNVVRPQDQTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKF 384
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
K LIVTD+AARG+DIPLLDNVIN+ FP K K+F+HRVGR ARAGR+GTA+S V
Sbjct: 385 TLGKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAP 444
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVS 432
+++ YLLDLHLFL + + + EE +A + + GR PQ+V+D
Sbjct: 445 DEIPYLLDLHLFLGRSLTLSRPLEE------------PSGVAGVDGMLGRVPQSVVDEED 492
Query: 433 DRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK--DLPREGLHPMFKNVL 490
++ +++S +L L R NA + Y +++P PS ESI+R K DL GLHP+F +
Sbjct: 493 SGLQSTLEASLELRGLARVADNAQQQYVRSRPAPSPESIKRAKEMDLVGLGLHPLFSSRF 552
Query: 491 EGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIIN- 549
E EL L + +K +R + TI E A S+ L SQ VM+ KR K I
Sbjct: 553 EEEELQRLRLVDSIKNYRSRATIFEIN---ASSRDL---CSQ---VMRAKRQKDRKAIAR 603
Query: 550 -LVHQQRSSKSMEKEVEPEAD-------------------------SLMAKEIKETHGSK 583
QQ + E V P S + + ++ G
Sbjct: 604 FQQGQQGRQEQQEGPVGPAPSRPALQEKQPEKEEEEEAGESVEDIFSEVVGQKRQRSGPN 663
Query: 584 RKAKTF------KDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGL 637
R AK +D+E++I P + E GLS+ + G + AVLDL+ D++ L
Sbjct: 664 RGAKRRREEARQRDQEFYIPYRPRDFDSERGLSISGEGGAFEQQAAGAVLDLMGDEAQNL 723
Query: 638 QKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKV 696
+ +Q WD++ K+++ G+ K +KTESG + ++ K +Y+KWK++ +K+
Sbjct: 724 TRGRQQLKWDRKKKRFV----GQSGQEDKKKIKTESGRYISSSYKRDLYQKWKQK--QKI 777
Query: 697 YLKGASNEGNAEETTSVPGGRHLGGNNRKFRGG-KNQQRSVPNAHVCSEIKDLDQVRKER 755
+ + EG+++ G GG + +G + P V E+K Q+ K+R
Sbjct: 778 DDRDSDEEGSSDRR----GPERRGGKRDRGQGASRPHAPGTPAGRVRPELKTKQQILKQR 833
Query: 756 QKKADRIAFMK 766
++A ++ F++
Sbjct: 834 -RRAQKLRFLQ 843
>gi|440898266|gb|ELR49795.1| ATP-dependent RNA helicase DDX54 [Bos grunniens mutus]
Length = 872
Score = 567 bits (1460), Expect = e-158, Method: Compositional matrix adjust.
Identities = 334/785 (42%), Positives = 472/785 (60%), Gaps = 67/785 (8%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
R + KKK KSGGF+S+ LS VF+ I +KGYKVPTPIQRKT+P+IL G DVVAMARTGSG
Sbjct: 86 RAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPMILDGKDVVAMARTGSG 145
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTA FL+PM +RL H Q G RALILSPTR+LALQT+KFTKELG++T L+ +L++GGD
Sbjct: 146 KTACFLIPMFERLKTHSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDK 205
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
ME QF L +NPDIIIATPGRL+H E+ ++ L+SVEYVVFDEAD LF MGFAEQL +I
Sbjct: 206 MEDQFAALHENPDIIIATPGRLVHVAVEM-NLKLQSVEYVVFDEADRLFEMGFAEQLQEI 264
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
+G+L QT+LFSATLP L EFA+AGL +P L+RLDVD+K++ LK +FF +R++ K
Sbjct: 265 IGRLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDSKLNEQLKTSFFLVREDAKA 324
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
A LL+++R + QT++FV+TKHH E+L+ L +G+ + Y +DQ ARKI+++RF
Sbjct: 325 AVLLHLLRNVVRPQDQTVVFVATKHHAEYLSELLATQGVSCAHIYSALDQTARKINLARF 384
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
K LIVTD+AARG+DIPLLDNVIN+ FP K K+F+HRVGR ARAGR+GTA+S V
Sbjct: 385 THGKCSALIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAP 444
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVS 432
+++ YLLDLHLFL + + A EE G+ + GR PQ V+D
Sbjct: 445 DEVPYLLDLHLFLGRALTLARPPEE------------PSGTEGGDGVLGRVPQGVVDDED 492
Query: 433 DRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK--DLPREGLHPMFKNVL 490
+R +++S +L L R NA + Y +++P PS ESI+R K DL GLHP+F +
Sbjct: 493 CGLRTSLEASLELRGLNRVANNAQQQYVRSRPAPSPESIKRAKELDLAGLGLHPLFSSRF 552
Query: 491 EGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINL 550
+ EL L + ++ +R + TI E A S+ L SSQ VM+ KR K I
Sbjct: 553 QQEELQRLRLVDSIRNYRSRATIFEIN---ASSRDL---SSQ---VMRAKREKDRKAIAS 603
Query: 551 VHQQRSSKS------------------MEKEVEPEADSLMAKEI----KETHGSKRKAKT 588
Q R + ++EV E+ + E+ ++ G R AK
Sbjct: 604 FQQGRQERQEGPAGPTPSLPAPQEEQPEKEEVAGESVEDVFTEVVGRKRQQPGPHRGAKR 663
Query: 589 F------KDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQ 642
+D+ ++I P + E GLS+ D G ++ A LDL+ D++ L + +Q
Sbjct: 664 RREEARQRDQAFYIPYRPKDFDSERGLSIGGDGGAFEQQVAGAALDLMGDEAQSLTRGRQ 723
Query: 643 VYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGA 701
W +++ G+ K +KTESG + ++ K +Y+KWK++ +K+ + +
Sbjct: 724 QLRW-----RFV----GQSGQEDKKKIKTESGRYISSSYKRDLYQKWKQK--QKIDDRDS 772
Query: 702 SNEGNAEETTSVPGGRHLGGNNRKFRGGKNQQRSVPNAHVCSEIKDLDQVRKERQKKADR 761
EG + R + + + P V SE+K Q+ K+R ++A +
Sbjct: 773 EEEGTFDRRGPE--RRGGKRGRGQAGAPQPRTPGTPAGRVLSELKTKQQILKQR-RRAQK 829
Query: 762 IAFMK 766
+ F++
Sbjct: 830 MRFLQ 834
>gi|62740160|gb|AAH94142.1| LOC495097 protein, partial [Xenopus laevis]
Length = 693
Score = 565 bits (1456), Expect = e-158, Method: Compositional matrix adjust.
Identities = 315/661 (47%), Positives = 429/661 (64%), Gaps = 63/661 (9%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
R + KKK KSGGF+S+ LS V++ + +KGYKVPTPIQRK +P+IL G DVVAMARTGSG
Sbjct: 65 RAQNKKKKKSGGFQSMGLSYPVYKGVMKKGYKVPTPIQRKVVPVILDGKDVVAMARTGSG 124
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTA FL+PM ++L H Q GVR LILSPTR+LALQTLKFTKELG++T L+ +L++GGD
Sbjct: 125 KTACFLIPMFEKLKAHSAQTGVRGLILSPTRELALQTLKFTKELGKFTGLKTALILGGDR 184
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
ME QF L +NPDIIIATPGRLMH E+ ++ L+SVEYVVFDEAD LF MGFAEQL +I
Sbjct: 185 MEDQFAALHENPDIIIATPGRLMHVAIEM-NLKLRSVEYVVFDEADRLFEMGFAEQLQEI 243
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
+ +L E RQTLLFSATLP L EFA+AGL +P L+RLDVDTK+S LKL+FF +R E+K
Sbjct: 244 ISRLPETRQTLLFSATLPKMLLEFARAGLTEPVLIRLDVDTKLSDQLKLSFFNVRVEDKP 303
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
A LL+++R + +QT+IFV+TKHH E+L L +G+ S Y +DQ ARKI++ F
Sbjct: 304 AVLLHLLRCVVKPQEQTVIFVATKHHAEYLRELLDMQGIPCSHIYSSLDQTARKINLGLF 363
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
K L+VTDVAARGIDIP+LDNVIN++FPPK K+F+HRVGR ARAGR+GTA+SF+
Sbjct: 364 LHGKVRALLVTDVAARGIDIPMLDNVINYNFPPKAKLFLHRVGRVARAGRSGTAYSFIAP 423
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEE-EVLLDMDGVMSKIDQAIANGETIYGRFPQTVID-- 429
+++ Y+ DLHLFL +P++ A ++ E D DGV+ GR PQ++ID
Sbjct: 424 DEIPYVYDLHLFLGRPLKLANAQNIETEADTDGVL--------------GRVPQSLIDDE 469
Query: 430 ---LVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPRE--GLHP 484
L++DR R S +L +L + NA++ Y K++P PS ESI+R KD G+HP
Sbjct: 470 DALLITDRER-----SLELQNLHQVSENAYKQYIKSRPTPSPESIKRVKDANYNLLGVHP 524
Query: 485 MFKNVLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVH 544
+F + L G E+ L F + +K+++ K TI E + S +VM+ KR
Sbjct: 525 LFWSQLGGEEMQRLKFVDGIKSYKSKATIFEINSTSKTSAS---------EVMRAKRNHD 575
Query: 545 EKII---NLVHQQRSSKSM--------------EKEVEPEADSLMAK----EIKETHGS- 582
K+I + ++++S ++ E+ +E ++ K + E GS
Sbjct: 576 GKLIAKFQRLQEEKTSATVTSGISGLCCKQESDEENIEGVFSQVIGKRKMTDKDEAEGSK 635
Query: 583 KRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEA-AVLDLVADDSGGLQKQK 641
KRK +D Y+I P + E GLS+ G + A AV+DL+ D + L+K+K
Sbjct: 636 KRKGGASQDSNYYIPYRPKDFESERGLSI---GGSSFEQAAAGAVMDLLGDHTEDLKKKK 692
Query: 642 Q 642
+
Sbjct: 693 K 693
>gi|320163598|gb|EFW40497.1| ATP-dependent RNA helicase [Capsaspora owczarzaki ATCC 30864]
Length = 1198
Score = 564 bits (1453), Expect = e-158, Method: Compositional matrix adjust.
Identities = 280/546 (51%), Positives = 388/546 (71%), Gaps = 4/546 (0%)
Query: 16 QKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTA 75
Q +K SGGF+SL LS N+FRAI +KGYKVPTPIQRKTMPL+L G DVVAMARTGSGKTA
Sbjct: 250 QNRKKSSGGFQSLGLSYNIFRAIGKKGYKVPTPIQRKTMPLLLEGKDVVAMARTGSGKTA 309
Query: 76 AFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMES 135
AFLVP+L++L HVP G RALILSPTR+LA+QT KF +L +T+LR L+VGG+S+E
Sbjct: 310 AFLVPLLEKLQSHVPGTGCRALILSPTRELAMQTHKFCNDLSSFTNLRTRLIVGGESLEQ 369
Query: 136 QFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQ 195
QF + +NPDI+IATPGR +H + E+ ++ L++V+YVVFDEAD LF MGFAEQL ++L +
Sbjct: 370 QFAAMHENPDIVIATPGRFLHVVMEM-NLRLQAVQYVVFDEADRLFEMGFAEQLSELLAR 428
Query: 196 LSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAAL 255
L E RQT LFSATLP L +FA+AGL+DP LVRLDVDTKIS +L LA F +R++EK AL
Sbjct: 429 LPEGRQTCLFSATLPRMLVDFARAGLQDPVLVRLDVDTKISENLSLAHFIVRKDEKIGAL 488
Query: 256 LYMIREHI-SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRA 314
++++ I ++ +Q+++FV+T+HHVEF++++ GL + YG MDQ ARKI++++FR
Sbjct: 489 IHVLTNLINTTTEQSIVFVATRHHVEFISLILTSFGLSVASIYGSMDQAARKINLAKFRL 548
Query: 315 RKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
K ++VTDVAARGIDIPLL+NVIN+DFP KPK+F+HRVGRAARAGRTG A+S V ++
Sbjct: 549 NKASVMVVTDVAARGIDIPLLNNVINYDFPAKPKLFIHRVGRAARAGRTGVAYSLVQPDE 608
Query: 375 MAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDR 434
+ Y+LDLHLFL +P+ + E + KI I+ ET+ G P ++ +
Sbjct: 609 LPYVLDLHLFLGRPLVLSTGERRTVSGATPSGQKILPGISPDETVLGSIPNVLLADAVEE 668
Query: 435 VREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGL--HPMFKNVLEG 492
++ I +S D+ SL R TNA++LYSK++PLP+ ES+ R KD+ + HP F N ++
Sbjct: 669 SKQKIAASFDIQSLVRVVTNAYQLYSKSRPLPAAESVGRAKDMMSGTIPPHPCFLNEMDD 728
Query: 493 GELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVH 552
E+ ++L +F+P+ TI E ++ + G +++ VM KR H I+ H
Sbjct: 729 AEIARSTVLDQLHSFKPRGTIFEINSGSSSASGAGGKNNKDQMVMIAKREEHAATISRFH 788
Query: 553 QQRSSK 558
++R +
Sbjct: 789 EKREGR 794
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 92/181 (50%), Gaps = 15/181 (8%)
Query: 589 FKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEA--AVLDLVADDSGGLQKQKQVYHW 646
+D E++I + H E G S+R +G A AVLDL +D+ ++ K + W
Sbjct: 976 MRDREFYIPYRSKDAHQEGGYSMREREGTAGFETAASEAVLDLGGEDADTMRAHKSLMRW 1035
Query: 647 DKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEG 705
D++ KK++++N E K+++TESGA V A+ K +YK+WK + H V +E
Sbjct: 1036 DRKKKKFVRVNANESNDGKNKMIRTESGALVPASYKKDLYKEWKNKHH--VQGIAGRDEL 1093
Query: 706 NAEETTSV--PGGRHLGGNNRKFRGGKNQQRSVP------NAHVCSEIKDLDQVRKERQK 757
+A+ V G + +G + +G + + P +AH E+K Q+ K+R+K
Sbjct: 1094 DAKSAFGVDTSGPQRVGKRFKHMQGTPGYKSATPGPAKGGSAH--PELKPTSQLLKQREK 1151
Query: 758 K 758
K
Sbjct: 1152 K 1152
>gi|432094964|gb|ELK26372.1| ATP-dependent RNA helicase DDX54 [Myotis davidii]
Length = 829
Score = 564 bits (1453), Expect = e-158, Method: Compositional matrix adjust.
Identities = 336/797 (42%), Positives = 475/797 (59%), Gaps = 85/797 (10%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
R + KKK KSGGF+S+ LS VF+ I +KGYKVPTPIQRKT+P+IL G D+VAMARTGSG
Sbjct: 37 RAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDMVAMARTGSG 96
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTA FL+PM +RL Q G RALILSPTR+LALQT+KFTKELG++T L+ +L++GGD
Sbjct: 97 KTACFLIPMFERLKARSAQSGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDK 156
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
ME QF L +NPDIIIATPGRLMH E+ ++ L+SVEYVVFDEAD LF MGFAEQL +I
Sbjct: 157 MEDQFSALHENPDIIIATPGRLMHVAVEM-NLKLQSVEYVVFDEADRLFEMGFAEQLQEI 215
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
+ +L QTLLFSATLP L EFA+AGL +P L+RLDVD K++ LK +FF +R++ K
Sbjct: 216 ISRLPGGHQTLLFSATLPKMLVEFARAGLTEPVLIRLDVDAKLNEQLKTSFFLVREDTKA 275
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
A LL+++R+ + QT++FV+TKHH E+L+ L + + + Y +DQ ARKI++++F
Sbjct: 276 AVLLHLLRDVVRPQDQTVVFVATKHHAEYLSELLTTQRVSCAHIYSALDQTARKINLAKF 335
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
K LIVTD+AARG+DIPLLDNVIN+ FP K K+F+HRVGR ARAGR+GTA+S V
Sbjct: 336 THGKCSTLIVTDLAARGLDIPLLDNVINFSFPAKGKLFLHRVGRVARAGRSGTAYSLVAP 395
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEEEV--LLDMDGVMSKIDQAIANGETIYGRFPQTVIDL 430
+++ YLLDLHLFL + + A EE + +DGV+ GR PQ+V+D
Sbjct: 396 DEVPYLLDLHLFLGRSLTLARPHEEPSGAVGVDGVL--------------GRVPQSVVDD 441
Query: 431 VSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK--DLPREGLHPMFKN 488
+R +++S +L L R NA + Y +++P PS ESI+R K DL GLHP+F
Sbjct: 442 EDCGLRNTLEASLELRGLSRVADNAQQQYVRSRPAPSPESIKRAKELDLAGLGLHPLFXX 501
Query: 489 VLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKII 548
TI E A S+ L SSQ VM+ KR K I
Sbjct: 502 XXXXXXXXXXXXXXXXXXXXXXXTIFEIN---ASSRDL---SSQ---VMRAKRQKDCKAI 552
Query: 549 NLVHQQRSSKSMEKEVEPEADSLMAKEIKET----------------------------- 579
Q R + ++ + A S A+++++
Sbjct: 553 ASFQQGRQER--QEGLAGTARSCPARQVEQPGKEEEEAAGESVEDVFTEVVGRKRQQPGP 610
Query: 580 -HGSKRKAKTF--KDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGG 636
G+KR+ + +D+++++ P + E GLSV D G ++ AVLDL+ D++
Sbjct: 611 EQGAKRRKEEARQRDQDFYVPYRPKDFDSERGLSVGGDGGAFEQQVAGAVLDLMGDEAQN 670
Query: 637 LQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKK 695
L + +Q WD++ K+++ G+ K +KTESG + ++ K +Y+KWK++ +K
Sbjct: 671 LTRGRQQLKWDRKKKRFV----GQSGQEDKKKIKTESGRYISSSYKRDLYQKWKQK--QK 724
Query: 696 VYLKGASNEGNAEETTSVPGGRHLGGNNRKFRGGKNQQRSVPN------AHVCSEIKDLD 749
+ + + EG P R G R ++ G+ Q S P V SE+K
Sbjct: 725 IDDRDSEEEG--------PSDRR-GPEQRGWKRGRGQGASQPRTSGPPAGRVRSELKTKQ 775
Query: 750 QVRKERQKKADRIAFMK 766
Q+ K+R ++A ++ F++
Sbjct: 776 QILKQR-RQAQKMRFLQ 791
>gi|159490042|ref|XP_001702998.1| predicted protein [Chlamydomonas reinhardtii]
gi|158270905|gb|EDO96736.1| predicted protein [Chlamydomonas reinhardtii]
Length = 485
Score = 563 bits (1452), Expect = e-157, Method: Compositional matrix adjust.
Identities = 272/489 (55%), Positives = 364/489 (74%), Gaps = 16/489 (3%)
Query: 14 EKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGK 73
++QKKK K+G F+S+ SP+V RAIKRKGY++PTPIQR+ MP+I+ G DVV MARTGSGK
Sbjct: 1 KEQKKKMKAGTFDSMGFSPDVLRAIKRKGYRLPTPIQRRAMPMIMQGLDVVGMARTGSGK 60
Query: 74 TAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSM 133
TAAF++PM+ RL +H + G RA+ILSPTR+LALQT K ++L +YT LR + LVGGDSM
Sbjct: 61 TAAFVLPMIHRLKEHSIRAGARAVILSPTRELALQTHKTVRDLCKYTSLRTACLVGGDSM 120
Query: 134 ESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKIL 193
E QF ELA NPD+I+ATPGRL HHL EVE +SL++VEY V DEAD +F MGF Q+ ++L
Sbjct: 121 EVQFAELAANPDVIVATPGRLAHHLEEVEGLSLRAVEYCVCDEADRMFEMGFIAQVSELL 180
Query: 194 GQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ--EEK 251
++S RQTLLFSAT+PS LAEFA AGL P LVRLD + KISP+L LAFFT R E+K
Sbjct: 181 RKMSPGRQTLLFSATMPSTLAEFASAGLNAPQLVRLDTERKISPELGLAFFTCRCAFEDK 240
Query: 252 HAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSR 311
AA+L+++RE + ++Q T++F +T+HH EFL L +EG++ + +G MDQ ARKIHV++
Sbjct: 241 VAAMLHLVREVVPANQLTILFTATRHHAEFLYTLLLKEGVDAACVFGSMDQTARKIHVAK 300
Query: 312 FRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVT 371
FRA ++ L+ TDVAARGIDIPL+DNVIN+DFPPKP++FVHRVGRAARAGR+GTA+S +T
Sbjct: 301 FRAGRSHLLVTTDVAARGIDIPLIDNVINFDFPPKPELFVHRVGRAARAGRSGTAYSLLT 360
Query: 372 SEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDG----------VMSKIDQAIANGETIYG 421
E++ YLLDLHL+LS+ ++ AP ++ DM ++ E++YG
Sbjct: 361 REELPYLLDLHLYLSRDVKPAP----LVPDMPAPGSAAEGADAAALAAAATSSSSESVYG 416
Query: 422 RFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREG 481
P V+D + + VRE + +SADL + RT TNA+ +Y KT+P S +S+RR + L +EG
Sbjct: 417 SLPAVVLDPLIEHVREQVQASADLEGMLRTLTNAWSMYCKTRPQASAQSVRRARALTKEG 476
Query: 482 LHPMFKNVL 490
+HPM +L
Sbjct: 477 VHPMLLALL 485
>gi|164419743|ref|NP_001104792.1| ATP-dependent RNA helicase DDX54 isoform 1 [Homo sapiens]
gi|19110894|gb|AAL85336.1|AF478457_1 ATP-dependent RNA helicase [Homo sapiens]
gi|119618445|gb|EAW98039.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 54, isoform CRA_a [Homo
sapiens]
Length = 882
Score = 563 bits (1451), Expect = e-157, Method: Compositional matrix adjust.
Identities = 335/792 (42%), Positives = 473/792 (59%), Gaps = 71/792 (8%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
R + KKK KSGGF+S+ LS VF+ I +KGYKVPTPIQRKT+P+IL G DVVAMARTGSG
Sbjct: 86 RAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSG 145
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTA FL+PM +RL H Q G RALILSPTR+LALQTLKFTKELG++T L+ +L++GGD
Sbjct: 146 KTACFLLPMFERLKTHSAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDR 205
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
ME QF L +NPDIIIATPGRL+H E+ + L+SVEYVVFDEAD LF MGFAEQL +I
Sbjct: 206 MEDQFAALHENPDIIIATPGRLVHVAVEM-SLKLQSVEYVVFDEADRLFEMGFAEQLQEI 264
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
+ +L QT+LFSATLP L EFA+AGL +P L+RLDVDTK++ LK +FF +R++ K
Sbjct: 265 IARLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSFFLVREDTKA 324
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
A LL+++ + QT++FV+TKHH E+L L + + + Y +D ARKI++++F
Sbjct: 325 AVLLHLLHNVVRPQDQTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKF 384
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
K LIVTD+AARG+DIPLLDNVIN+ FP K K+F+HRVGR ARAGR+GTA+S V
Sbjct: 385 TLGKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAP 444
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVS 432
+++ YLLDLHLFL + + A +E +A + + GR PQ+V+D
Sbjct: 445 DEIPYLLDLHLFLGRSLTLARPLKE------------PSGVAGVDGMLGRVPQSVVDEED 492
Query: 433 DRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK--DLPREGLHPMFKNVL 490
++ +++S +L L R NA + Y +++P PS ESI+R K DL GLHP+F +
Sbjct: 493 SGLQSTLEASLELRGLARVADNAQQQYVRSRPAPSPESIKRAKEMDLVGLGLHPLFSSRF 552
Query: 491 EGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIIN- 549
E EL L + +K +R + TI E A S+ L SQ VM+ KR K I
Sbjct: 553 EEEELQRLRLVDSIKNYRSRATIFEIN---ASSRDL---CSQ---VMRAKRQKDRKAIAR 603
Query: 550 -LVHQQRSSKSMEKEVEPEAD-------------------------SLMAKEIKETHGSK 583
QQ + E V P S + ++ G
Sbjct: 604 FQQGQQGRQEQQEGPVGPAPSRPALQEKQPEKEEEEEAGESVEDIFSEVVGRKRQRSGPN 663
Query: 584 RKAKTF------KDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGL 637
R AK +D+E++I P + E GLS+ + G + AVLDL+ D++ L
Sbjct: 664 RGAKRRREEARQRDQEFYIPYRPKDFDSERGLSISGEGGAFEQQAAGAVLDLMGDEAQNL 723
Query: 638 QKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKV 696
+ +Q WD++ K+++ G+ K +KTESG + ++ K +Y+KWK++ +K+
Sbjct: 724 TRGRQQLKWDRKKKRFV----GQSGQEDKKKIKTESGRYISSSYKRDLYQKWKQK--QKI 777
Query: 697 YLKGASNEGNAEETTSVPGGRHLGGNNRKFRGGKNQQRS--VPNAHVCSEIKDLDQVRKE 754
+ + EG ++ G GG + + G ++ + P V E+K Q+ K+
Sbjct: 778 DDRDSDEEGASDRR----GPERRGGKRDRGQAGASRPHAPGTPAGRVRPELKTKQQILKQ 833
Query: 755 RQKKADRIAFMK 766
R ++A ++ F++
Sbjct: 834 R-RRAQKLHFLQ 844
>gi|405975829|gb|EKC40371.1| ATP-dependent RNA helicase DDX54, partial [Crassostrea gigas]
Length = 742
Score = 563 bits (1450), Expect = e-157, Method: Compositional matrix adjust.
Identities = 313/649 (48%), Positives = 418/649 (64%), Gaps = 67/649 (10%)
Query: 14 EKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGK 73
E+ +KK KSGGF+S+ LS V++ + RKGYK+PTPIQRKT+PLI+ G DVVAMARTGSGK
Sbjct: 24 EQNRKKKKSGGFQSMGLSHGVYKGVLRKGYKIPTPIQRKTVPLIMEGKDVVAMARTGSGK 83
Query: 74 TAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSM 133
TAAFL+PM ++L H + G R LILSPTR+LALQTLKFTKELG+YT LR ++++GGD M
Sbjct: 84 TAAFLIPMFEKLKTHTAKSGARGLILSPTRELALQTLKFTKELGKYTGLRAAVVLGGDKM 143
Query: 134 ESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKIL 193
+ QF L +NPDIIIATPGRLMH L E+E LKSVEYVVFDEAD LF MGF EQLH+I+
Sbjct: 144 DDQFAALHENPDIIIATPGRLMHVLVEMEK-KLKSVEYVVFDEADRLFEMGFQEQLHEII 202
Query: 194 GQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHA 253
+L E+RQT+LFSATLP L EFAKAGL DP L+RLDV+TK+S LK +FF R+E+K A
Sbjct: 203 HRLPESRQTVLFSATLPKLLVEFAKAGLHDPTLLRLDVETKLSEQLKQSFFRCREEDKPA 262
Query: 254 ALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFR 313
LLYM++ I DQQT++F +TKHHVE+L+++ G++ + Y +D ARKI+V++F+
Sbjct: 263 ILLYMLKHVIDLDQQTVVFAATKHHVEYLHMILTYAGIDSTYIYSSLDPSARKINVAKFQ 322
Query: 314 ARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSE 373
+K LIVTD+AARGIDIPLLDNVIN +FP K K+FVHRVGR ARAGR G A+S V +
Sbjct: 323 HKKVKVLIVTDLAARGIDIPLLDNVINVNFPAKSKLFVHRVGRVARAGREGCAYSLVAQD 382
Query: 374 DMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSD 433
++ +LLDL++FL + + A S+ + + D DGV+ G PQTVID +
Sbjct: 383 EVPFLLDLYIFLGRSLNIA-SQLKNVEDKDGVL--------------GDVPQTVIDEEEE 427
Query: 434 RVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPRE---GLHPMFKNVL 490
++R DL ++++ NA + Y +++PLP+KESI+R K + GLHP+F
Sbjct: 428 QLRLWHKDHIDLINMKKVVGNAQKKYLRSRPLPAKESIKRYKQIQSADNIGLHPVFAKEC 487
Query: 491 EGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINL 550
E LKA++ TI E + ++ DVMK KRA H+ +I
Sbjct: 488 STEEQQKNELLNALKAYKGHSTIFETNTSS---------KNRSFDVMKHKRAFHQTVI-- 536
Query: 551 VHQQRSSKSMEKEVEPEADS--------LMAKE--IKETH----GSKRKA---------- 586
Q+ +K + + E+D LMA E +KET G KRKA
Sbjct: 537 ---QKKTKQVTDLKDAESDDSDRGETEQLMADEENVKETFRTVIGGKRKANNKLFDPQRK 593
Query: 587 -----KTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNR-LEAAVLDL 629
++ +DEE ++ P + E GLS+ G ++ AVLDL
Sbjct: 594 KKRKQESIRDEENYLHYRPKDFQSELGLSL----GTSFDKEATGAVLDL 638
>gi|51094101|ref|NP_076977.3| ATP-dependent RNA helicase DDX54 isoform 2 [Homo sapiens]
gi|46576615|sp|Q8TDD1.2|DDX54_HUMAN RecName: Full=ATP-dependent RNA helicase DDX54; AltName:
Full=ATP-dependent RNA helicase DP97; AltName: Full=DEAD
box RNA helicase 97 kDa; AltName: Full=DEAD box protein
54
gi|162319036|gb|AAI56670.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 [synthetic construct]
Length = 881
Score = 562 bits (1449), Expect = e-157, Method: Compositional matrix adjust.
Identities = 335/791 (42%), Positives = 471/791 (59%), Gaps = 70/791 (8%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
R + KKK KSGGF+S+ LS VF+ I +KGYKVPTPIQRKT+P+IL G DVVAMARTGSG
Sbjct: 86 RAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSG 145
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTA FL+PM +RL H Q G RALILSPTR+LALQTLKFTKELG++T L+ +L++GGD
Sbjct: 146 KTACFLLPMFERLKTHSAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDR 205
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
ME QF L +NPDIIIATPGRL+H E+ + L+SVEYVVFDEAD LF MGFAEQL +I
Sbjct: 206 MEDQFAALHENPDIIIATPGRLVHVAVEM-SLKLQSVEYVVFDEADRLFEMGFAEQLQEI 264
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
+ +L QT+LFSATLP L EFA+AGL +P L+RLDVDTK++ LK +FF +R++ K
Sbjct: 265 IARLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSFFLVREDTKA 324
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
A LL+++ + QT++FV+TKHH E+L L + + + Y +D ARKI++++F
Sbjct: 325 AVLLHLLHNVVRPQDQTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKF 384
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
K LIVTD+AARG+DIPLLDNVIN+ FP K K+F+HRVGR ARAGR+GTA+S V
Sbjct: 385 TLGKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAP 444
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVS 432
+++ YLLDLHLFL + + A +E +A + + GR PQ+V+D
Sbjct: 445 DEIPYLLDLHLFLGRSLTLARPLKE------------PSGVAGVDGMLGRVPQSVVDEED 492
Query: 433 DRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK--DLPREGLHPMFKNVL 490
++ +++S +L L R NA + Y +++P PS ESI+R K DL GLHP+F +
Sbjct: 493 SGLQSTLEASLELRGLARVADNAQQQYVRSRPAPSPESIKRAKEMDLVGLGLHPLFSSRF 552
Query: 491 EGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIIN- 549
E EL L + +K +R + TI E A S+ L SQ VM+ KR K I
Sbjct: 553 EEEELQRLRLVDSIKNYRSRATIFEIN---ASSRDL---CSQ---VMRAKRQKDRKAIAR 603
Query: 550 -LVHQQRSSKSMEKEVEPEAD-------------------------SLMAKEIKETHGSK 583
QQ + E V P S + ++ G
Sbjct: 604 FQQGQQGRQEQQEGPVGPAPSRPALQEKQPEKEEEEEAGESVEDIFSEVVGRKRQRSGPN 663
Query: 584 RKAKTF------KDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGL 637
R AK +D+E++I P + E GLS+ + G + AVLDL+ D++ L
Sbjct: 664 RGAKRRREEARQRDQEFYIPYRPKDFDSERGLSISGEGGAFEQQAAGAVLDLMGDEAQNL 723
Query: 638 QKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKV 696
+ +Q WD++ K+++ G+ K +KTESG + ++ K +Y+KWK++ +K+
Sbjct: 724 TRGRQQLKWDRKKKRFV----GQSGQEDKKKIKTESGRYISSSYKRDLYQKWKQK--QKI 777
Query: 697 YLKGASNEGNAEETTSVPGGRHLGGNNRKFRGG-KNQQRSVPNAHVCSEIKDLDQVRKER 755
+ + EG ++ G GG + +G + P V E+K Q+ K+R
Sbjct: 778 DDRDSDEEGASDRR----GPERRGGKRDRGQGASRPHAPGTPAGRVRPELKTKQQILKQR 833
Query: 756 QKKADRIAFMK 766
++A ++ F++
Sbjct: 834 -RRAQKLHFLQ 843
>gi|28301751|gb|AAN59978.1| DEAD box RNA helicase DP97 [Homo sapiens]
gi|119618446|gb|EAW98040.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 54, isoform CRA_b [Homo
sapiens]
Length = 865
Score = 562 bits (1448), Expect = e-157, Method: Compositional matrix adjust.
Identities = 335/791 (42%), Positives = 471/791 (59%), Gaps = 70/791 (8%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
R + KKK KSGGF+S+ LS VF+ I +KGYKVPTPIQRKT+P+IL G DVVAMARTGSG
Sbjct: 70 RAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSG 129
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTA FL+PM +RL H Q G RALILSPTR+LALQTLKFTKELG++T L+ +L++GGD
Sbjct: 130 KTACFLLPMFERLKTHSAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDR 189
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
ME QF L +NPDIIIATPGRL+H E+ + L+SVEYVVFDEAD LF MGFAEQL +I
Sbjct: 190 MEDQFAALHENPDIIIATPGRLVHVAVEM-SLKLQSVEYVVFDEADRLFEMGFAEQLQEI 248
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
+ +L QT+LFSATLP L EFA+AGL +P L+RLDVDTK++ LK +FF +R++ K
Sbjct: 249 IARLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSFFLVREDTKA 308
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
A LL+++ + QT++FV+TKHH E+L L + + + Y +D ARKI++++F
Sbjct: 309 AVLLHLLHNVVRPQDQTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKF 368
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
K LIVTD+AARG+DIPLLDNVIN+ FP K K+F+HRVGR ARAGR+GTA+S V
Sbjct: 369 TLGKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAP 428
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVS 432
+++ YLLDLHLFL + + A +E +A + + GR PQ+V+D
Sbjct: 429 DEIPYLLDLHLFLGRSLTLARPLKE------------PSGVAGVDGMLGRVPQSVVDEED 476
Query: 433 DRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK--DLPREGLHPMFKNVL 490
++ +++S +L L R NA + Y +++P PS ESI+R K DL GLHP+F +
Sbjct: 477 SGLQSTLEASLELRGLARVADNAQQQYVRSRPAPSPESIKRAKEMDLVGLGLHPLFSSRF 536
Query: 491 EGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIIN- 549
E EL L + +K +R + TI E A S+ L SQ VM+ KR K I
Sbjct: 537 EEEELQRLRLVDSIKNYRSRATIFEIN---ASSRDL---CSQ---VMRAKRQKDRKAIAR 587
Query: 550 -LVHQQRSSKSMEKEVEPEAD-------------------------SLMAKEIKETHGSK 583
QQ + E V P S + ++ G
Sbjct: 588 FQQGQQGRQEQQEGPVGPAPSRPALQEKQPEKEEEEEAGESVEDIFSEVVGRKRQRSGPN 647
Query: 584 RKAKTF------KDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGL 637
R AK +D+E++I P + E GLS+ + G + AVLDL+ D++ L
Sbjct: 648 RGAKRRREEARQRDQEFYIPYRPKDFDSERGLSISGEGGAFEQQAAGAVLDLMGDEAQNL 707
Query: 638 QKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKV 696
+ +Q WD++ K+++ G+ K +KTESG + ++ K +Y+KWK++ +K+
Sbjct: 708 TRGRQQLKWDRKKKRFV----GQSGQEDKKKIKTESGRYISSSYKRDLYQKWKQK--QKI 761
Query: 697 YLKGASNEGNAEETTSVPGGRHLGGNNRKFRGG-KNQQRSVPNAHVCSEIKDLDQVRKER 755
+ + EG ++ G GG + +G + P V E+K Q+ K+R
Sbjct: 762 DDRDSDEEGASDRR----GPERRGGKRDRGQGASRPHAPGTPAGRVRPELKTKQQILKQR 817
Query: 756 QKKADRIAFMK 766
++A ++ F++
Sbjct: 818 -RRAQKLHFLQ 827
>gi|38014855|gb|AAH05848.2| DDX54 protein, partial [Homo sapiens]
Length = 864
Score = 562 bits (1448), Expect = e-157, Method: Compositional matrix adjust.
Identities = 335/791 (42%), Positives = 471/791 (59%), Gaps = 70/791 (8%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
R + KKK KSGGF+S+ LS VF+ I +KGYKVPTPIQRKT+P+IL G DVVAMARTGSG
Sbjct: 69 RAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSG 128
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTA FL+PM +RL H Q G RALILSPTR+LALQTLKFTKELG++T L+ +L++GGD
Sbjct: 129 KTACFLLPMFERLKTHSAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDR 188
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
ME QF L +NPDIIIATPGRL+H E+ + L+SVEYVVFDEAD LF MGFAEQL +I
Sbjct: 189 MEDQFAALHENPDIIIATPGRLVHVAVEM-SLKLQSVEYVVFDEADRLFEMGFAEQLQEI 247
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
+ +L QT+LFSATLP L EFA+AGL +P L+RLDVDTK++ LK +FF +R++ K
Sbjct: 248 IARLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSFFLVREDTKA 307
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
A LL+++ + QT++FV+TKHH E+L L + + + Y +D ARKI++++F
Sbjct: 308 AVLLHLLHNVVRPQDQTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKF 367
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
K LIVTD+AARG+DIPLLDNVIN+ FP K K+F+HRVGR ARAGR+GTA+S V
Sbjct: 368 TLGKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAP 427
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVS 432
+++ YLLDLHLFL + + A +E +A + + GR PQ+V+D
Sbjct: 428 DEIPYLLDLHLFLGRSLTLARPLKE------------PSGVAGVDGMLGRVPQSVVDEED 475
Query: 433 DRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK--DLPREGLHPMFKNVL 490
++ +++S +L L R NA + Y +++P PS ESI+R K DL GLHP+F +
Sbjct: 476 SGLQSTLEASLELRGLARVADNAQQQYVRSRPAPSPESIKRAKEMDLVGLGLHPLFSSRF 535
Query: 491 EGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIIN- 549
E EL L + +K +R + TI E A S+ L SQ VM+ KR K I
Sbjct: 536 EEEELQRLRLVDSIKNYRSRATIFEIN---ASSRDL---CSQ---VMRAKRQKDRKAIAR 586
Query: 550 -LVHQQRSSKSMEKEVEPEAD-------------------------SLMAKEIKETHGSK 583
QQ + E V P S + ++ G
Sbjct: 587 FQQGQQGRQEQQEGPVGPAPSRPALQEKQPEKEEEEEAGESVEDIFSEVVGRKRQRSGPN 646
Query: 584 RKAKTF------KDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGL 637
R AK +D+E++I P + E GLS+ + G + AVLDL+ D++ L
Sbjct: 647 RGAKRRREEARQRDQEFYIPYRPKDFDSERGLSISGEGGAFEQQAAGAVLDLMGDEAQNL 706
Query: 638 QKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKV 696
+ +Q WD++ K+++ G+ K +KTESG + ++ K +Y+KWK++ +K+
Sbjct: 707 TRGRQQLKWDRKKKRFV----GQSGQEDKKKIKTESGRYISSSYKRDLYQKWKQK--QKI 760
Query: 697 YLKGASNEGNAEETTSVPGGRHLGGNNRKFRGG-KNQQRSVPNAHVCSEIKDLDQVRKER 755
+ + EG ++ G GG + +G + P V E+K Q+ K+R
Sbjct: 761 DDRDSDEEGASDRR----GPERRGGKRDRGQGASRPHAPGTPAGRVRPELKTKQQILKQR 816
Query: 756 QKKADRIAFMK 766
++A ++ F++
Sbjct: 817 -RRAQKLHFLQ 826
>gi|241999744|ref|XP_002434515.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
gi|215497845|gb|EEC07339.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
Length = 771
Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust.
Identities = 339/811 (41%), Positives = 483/811 (59%), Gaps = 93/811 (11%)
Query: 19 KSKSGGFESLN------LSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
K KSGGF+S+ ++ N+ + + G + PI + T+P+IL G DVVAMARTGSG
Sbjct: 10 KKKSGGFQSMGNERADRVNWNLLTSAQLAG--LSPPILKGTIPVILEGRDVVAMARTGSG 67
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTAAFLVP+L +L Q G RAL+LSPTR+LALQT KF KELG++TDL+ ++++GGD+
Sbjct: 68 KTAAFLVPILDKLKARSLQAGARALVLSPTRELALQTHKFAKELGKFTDLKSTVILGGDN 127
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
ME QFE + +NPD++IATPGR +H + E+ D+ L S++YVVFDEAD LF MGF EQL++I
Sbjct: 128 MEDQFEAIHENPDVLIATPGRFLHIVMEM-DLKLSSIKYVVFDEADRLFEMGFQEQLNEI 186
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
L +L ENRQTLLFSATLP L +FA+AGL +P LVRLDV++++S LK + R +K
Sbjct: 187 LHRLPENRQTLLFSATLPRMLVDFARAGLNEPVLVRLDVESQLSDLLKTVYLMCRTNDKA 246
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
A LL++++ + D+ TL+FV+T+HH E+L + + + Y +DQ ARKI+VS+F
Sbjct: 247 AILLHLLKHVVKPDELTLVFVATRHHAEYLRDILERADVPCTQVYSSLDQAARKINVSKF 306
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
RAR+ ++VTDVAARGIDIPLLDNVIN FPPK K+FVHRVGR ARAGR+GTA+S V
Sbjct: 307 RARQVPVMLVTDVAARGIDIPLLDNVINHSFPPKAKLFVHRVGRVARAGRSGTAYSLVAP 366
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVS 432
++ YLLDLHLFL +P++ A S Q +G + G+ PQ VID +
Sbjct: 367 DEAPYLLDLHLFLGRPMQFA--------------SAASQVPESG--LCGKVPQMVIDEEA 410
Query: 433 DRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGL--HPMFKNVL 490
+ +R + + ++DL +++R C+NA Y K++P PS ES +R K +E + HP+F+
Sbjct: 411 EMLRVLHEQNSDLQNMERVCSNAMIQYLKSRPPPSSESAKRMKQFLKEDIAPHPVFR-AK 469
Query: 491 EGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINL 550
E + + + +K F+P TI E G +S VMKKKR H+K+I
Sbjct: 470 SADEDVRASLLQGMKRFKPPSTIFEI-GNTGKSDAF--------SVMKKKRQKHDKLIER 520
Query: 551 VHQQRSSKSMEK-----EVEPEADSLMAKE----------IKETHGSKRKAK-------- 587
+ Q +SKS E + E +++MA+E I KRK +
Sbjct: 521 ISSQAASKSQENTGPAPKTEGSQEAVMAEEEDIESAFATVIGSRKSQKRKKRGENCGSEA 580
Query: 588 -----------TFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGG 636
+FKDEE++I ++ H E GL + ++ F + AVLDL ADD
Sbjct: 581 SPEKKKKEKPDSFKDEEFYIPHFSSDFHSEKGLEL--EKTFE-QQASQAVLDLTADDEKM 637
Query: 637 LQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKK 695
LQKQK WD++ K++++ N + K ++TESGA + A+ K+ +YK+WK +S
Sbjct: 638 LQKQKSTMKWDRKKKRFVREGNDD---PKKKKIRTESGAWIPASYKSDVYKQWKRKSQVD 694
Query: 696 VYLKGASNEGNAEETTSVPGGRHLGGNNRKFRGGKNQQRSVPNAHVCSEIKDLDQVRKER 755
+ G + V LG +K RGG Q+ P E+K D++ K R
Sbjct: 695 ARDDDDEDSGGLGK-QKVAACDRLG---KKHRGGAKQKG--PRKQFKRELKTKDEILKAR 748
Query: 756 QKKADRIAFMKGKTQKGKKFSKNGKRGKPRK 786
Q+KA R+ F K K+G+R K RK
Sbjct: 749 QRKA-RLNFHVKK--------KHGERSKRRK 770
>gi|449268056|gb|EMC78927.1| ATP-dependent RNA helicase DDX54, partial [Columba livia]
Length = 797
Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust.
Identities = 325/784 (41%), Positives = 478/784 (60%), Gaps = 80/784 (10%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
R + +KK KSGGF+S+ LS VF+ I +KGYKVPTPIQRK++P IL G DVVAMARTGSG
Sbjct: 12 RAQNQKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKSIPAILRGRDVVAMARTGSG 71
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTA FL+PM +RL + Q G RAL+LSPTR+LALQTLKFTKELG++T L+ +L++GGD
Sbjct: 72 KTACFLIPMFERL-KAPSQAGARALVLSPTRELALQTLKFTKELGKFTGLKTALILGGDK 130
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
ME QF L +NPDIIIATPGRL+H E++ + L +VEYVVFDEAD LF MGFAEQL +I
Sbjct: 131 MEDQFAALHENPDIIIATPGRLVHVAVEMK-LKLHTVEYVVFDEADRLFEMGFAEQLQEI 189
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
+ +L + QT+LFSATLP L EFA+AGL +P L+RLDV++K+S LKLAFF LR ++K
Sbjct: 190 IARLPDCHQTVLFSATLPKLLVEFARAGLTEPMLIRLDVESKLSDQLKLAFFHLRGDDKP 249
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFL---NVLFREEGLEPSVCYGDMDQDARKIHV 309
A LL+++R + QT++FV+TKHH E+L + L +G+ + Y +DQ ARKI++
Sbjct: 250 AVLLHLLRSVVKPQDQTVVFVATKHHTEYLKEASSLLTAQGIRCTHIYSSLDQTARKINI 309
Query: 310 SRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSF 369
++F K L+VTDVAARG+DIP+LDNVIN+ FP K K+F+HRVGR ARAGR+GTA+S
Sbjct: 310 AKFSQGKCPVLLVTDVAARGLDIPMLDNVINYSFPAKAKLFLHRVGRVARAGRSGTAYSL 369
Query: 370 VTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVID 429
V ++M Y+ DLHLFL +P+ A +E+ D DGV+ ++ Q++ + E
Sbjct: 370 VAPDEMPYVFDLHLFLGRPLVLA-GAQEMPADADGVLGRVPQSLVDDEECL--------- 419
Query: 430 LVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK--DLPREGLHPMFK 487
L++D+ + S +L SL+R NA + Y +++P PS ESI+R K D+ + G+HP+F
Sbjct: 420 LLTDQ-----EGSLELRSLRRIAENAHKQYLRSRPGPSPESIKRAKELDVSQLGMHPLFS 474
Query: 488 NVLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKI 547
E EL L + +K ++ K TI E + + P+S VM+ KR H+++
Sbjct: 475 ARFEDTELERLKLVDSIKTYKSKATIFEINATS------RTPAS---TVMRSKRR-HDRV 524
Query: 548 I----NLVHQQRSSKSMEKE------VEPEA---------------DSLMAKEIKETHGS 582
+ Q+R + +++ + P+ +++ ++ K G
Sbjct: 525 LIEKYQRGQQERRAAALQGRGLCPDPLAPQEGEGEGEEEENLQDVFSTVVGQKRKRGRGG 584
Query: 583 ------KRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGG 636
K + +DE+++I P + E GLSV + + A+LDL+ D++
Sbjct: 585 DDGARKKTRQPVQQDEDFYIPYRPKDFESERGLSVGGEGSPFEQQAAGAILDLMGDENHN 644
Query: 637 LQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKK 695
L K KQ+ WD++ K+++ G+ K V+TESG + ++ K +Y+KWK++
Sbjct: 645 LNKSKQLLKWDRKKKRFV----GQTGQEGKKKVRTESGRYISSSYKNNLYEKWKQKYKVD 700
Query: 696 VYLKGASNEGNAEETTSVPGGRHLGGNNRKFRGGKNQQRSVPNAHVCSEIKDLDQVRKER 755
+ ++ E+ G+H R G + V SE+K+ Q+ K+R
Sbjct: 701 ERDEDEEDQRGREQFR----GKH--------RRGHGSGQPPAQGRVRSELKNKQQILKQR 748
Query: 756 QKKA 759
+K A
Sbjct: 749 KKAA 752
>gi|410216682|gb|JAA05560.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 [Pan troglodytes]
gi|410253650|gb|JAA14792.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 [Pan troglodytes]
gi|410293488|gb|JAA25344.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 [Pan troglodytes]
gi|410354049|gb|JAA43628.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 [Pan troglodytes]
Length = 882
Score = 561 bits (1445), Expect = e-157, Method: Compositional matrix adjust.
Identities = 334/790 (42%), Positives = 470/790 (59%), Gaps = 67/790 (8%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
R + KKK KSGGF+S+ LS VF+ I +KGYKVPTPIQRKT+P+IL G DVVAMARTGSG
Sbjct: 86 RAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSG 145
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTA FL+PM +RL H Q G RALILSPTR+LALQTLKFTKELG++T L+ +L++GGD
Sbjct: 146 KTACFLLPMFERLKTHSAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDR 205
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
ME QF L +NPDIIIATPGRL+H E+ + L+SVEYVVFDEAD LF MGFAEQL +I
Sbjct: 206 MEDQFAALHENPDIIIATPGRLVHVAVEM-SLKLQSVEYVVFDEADRLFEMGFAEQLQEI 264
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
+ +L QT+LFSATLP L EFA+AGL +P L+RLDVDTK++ LK +FF +R++ K
Sbjct: 265 IARLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSFFLVREDTKA 324
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
A LL+++R + QT++FV+TKHH E+L L + + + Y +D ARKI++++F
Sbjct: 325 AVLLHLLRNMVRPQDQTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKF 384
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
K LIVTD+AARG+DIPLLDNVIN+ FP K K+F+HRVGR ARAGR+GTA+S V
Sbjct: 385 TLGKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAP 444
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVS 432
+++ YLLDLHLFL + + A +E +A + + GR PQ+V+D
Sbjct: 445 DEIPYLLDLHLFLGRSLTLARPLKE------------PSGVAGVDGMLGRVPQSVVDEED 492
Query: 433 DRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK--DLPREGLHPMFKNVL 490
++ +++S +L L R NA + Y +++P PS ESI+R K DL GLHP+F +
Sbjct: 493 SGLQSTLEASLELRGLARVADNAQQQYVRSRPAPSPESIKRAKEMDLVGLGLHPLFSSRF 552
Query: 491 EGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIIN- 549
E EL L + +K +R + TI E A S+ L SQ VM+ KR K I
Sbjct: 553 EEEELQRLRLVDSIKNYRSRATIFEIN---ASSRDL---CSQ---VMRAKRQKDRKAIAR 603
Query: 550 -LVHQQRSSKSMEKEVEPEAD-------------------------SLMAKEIKETHGSK 583
QQ + E V P S + ++ G
Sbjct: 604 FQQGQQGRQEQQEGPVGPAPSRPALQEKQPEKEEEEEAGESVEDIFSEVVGRKRQRSGPN 663
Query: 584 RKAKTF------KDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGL 637
R AK +D+E++I P + E GLS+ + G + AVLDL+ D++ L
Sbjct: 664 RGAKRRREEARQRDQEFYIPYRPKDFDSERGLSISGEGGAFEQQAAGAVLDLMGDEAQNL 723
Query: 638 QKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKV 696
+ +Q WD++ K+++ G+ K +KTESG + ++ K +Y+KWK++ +K+
Sbjct: 724 TRGRQQLKWDRKKKRFV----GQSGQEDKKKIKTESGRYISSSYKRDLYQKWKQK--QKI 777
Query: 697 YLKGASNEGNAEETTSVPGGRHLGGNNRKFRGGKNQQRSVPNAHVCSEIKDLDQVRKERQ 756
+ + EG ++ P R + + + P V E+K Q+ K+R
Sbjct: 778 DDRDSDEEGASDRRG--PERRGGKRDRGRAGASRPHAPGTPAGQVRPELKTKQQILKQR- 834
Query: 757 KKADRIAFMK 766
++A ++ F++
Sbjct: 835 RRAQKLRFLQ 844
>gi|395513937|ref|XP_003761178.1| PREDICTED: ATP-dependent RNA helicase DDX54 [Sarcophilus harrisii]
Length = 757
Score = 560 bits (1443), Expect = e-156, Method: Compositional matrix adjust.
Identities = 314/685 (45%), Positives = 428/685 (62%), Gaps = 66/685 (9%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
R + KKK KSGGF+S+ LS VF+ I +KGYKVPTPIQRKT+P+IL G DVVAMARTGSG
Sbjct: 28 RAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSG 87
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTA FL+PM ++L H Q G RALILSPTR+LALQT+KFTKELG++T L+ +L++GGD
Sbjct: 88 KTACFLIPMFEKLKAHSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDK 147
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
ME QF L +NPDIIIATPGRLMH E+ ++ L SV+Y VFDEAD LF MGFAEQL +I
Sbjct: 148 MEDQFAALHENPDIIIATPGRLMHVAVEM-NLKLHSVQYAVFDEADRLFEMGFAEQLQEI 206
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
+ +L E+ QT+LFSATLP L EFA+AGL +P L+RLDVDTK++ LK+AFF +R+++K
Sbjct: 207 ISRLPEDHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKMAFFHIREDDKP 266
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
A LL+++R + QT++FV+TKHH E+L L +G+ + Y +DQ ARKI++++F
Sbjct: 267 AVLLHLLRNVVRPQDQTVVFVATKHHAEYLTELLTTQGVCCTHIYSSLDQTARKINLAKF 326
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
K LIVTDVAARG+DIPLLDNVIN++FP K K+F+HRVGR ARAGR+GTA+S V
Sbjct: 327 VHGKCSALIVTDVAARGLDIPLLDNVINYNFPAKSKLFLHRVGRVARAGRSGTAYSLVAP 386
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVS 432
+++ Y+ DLHLFL +P+ A E+ A+ + + GR P+ V+D
Sbjct: 387 DEVPYVFDLHLFLGRPLVLARPHEK------------PSGNASPDGVLGRVPRNVVDDEE 434
Query: 433 DRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPRE--GLHPMFKNVL 490
R+ D S++L SL+R NA + YS+++P PS ESI+R KDL GLHP+F +
Sbjct: 435 CRLLTDHDGSSELQSLRRVAENAPKQYSRSRPGPSPESIKRAKDLDPTLLGLHPLFSSQF 494
Query: 491 EGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINL 550
E EL + + +K +R + TI E + P SQ VM+ KR K I
Sbjct: 495 EDEELERMKLVDSIKNYRSRATIFEINTTT------RDPGSQ---VMRAKRKRDHKAIAK 545
Query: 551 VHQQRSSKSMEKEVEPEADSLMAKEIKETHGSKRKAKTFKDEEYFISSVPTNHHMEAGLS 610
Q ++E +P G R P H LS
Sbjct: 546 FQQG------QQERQP--------------GQPRPG-------------PLPAH---DLS 569
Query: 611 VRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVK 670
+ + + AVLDL+ D++ L K +Q WD++ K+++ E K +K
Sbjct: 570 IGGEGSAFEQQASGAVLDLMGDEAHSLTKSRQQLKWDRKKKRFVGATGQE----DKKKIK 625
Query: 671 TESGAKVKAT-KTGIYKKWKERSHK 694
TESG + ++ K +Y+KWK++ HK
Sbjct: 626 TESGRYISSSYKRDLYQKWKQK-HK 649
>gi|410216684|gb|JAA05561.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 [Pan troglodytes]
gi|410253652|gb|JAA14793.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 [Pan troglodytes]
gi|410293490|gb|JAA25345.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 [Pan troglodytes]
gi|410354051|gb|JAA43629.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 [Pan troglodytes]
Length = 885
Score = 560 bits (1442), Expect = e-156, Method: Compositional matrix adjust.
Identities = 333/793 (41%), Positives = 470/793 (59%), Gaps = 70/793 (8%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
R + KKK KSGGF+S+ LS VF+ I +KGYKVPTPIQRKT+P+IL G DVVAMARTGSG
Sbjct: 86 RAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSG 145
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTA FL+PM +RL H Q G RALILSPTR+LALQTLKFTKELG++T L+ +L++GGD
Sbjct: 146 KTACFLLPMFERLKTHSAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDR 205
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
ME QF L +NPDIIIATPGRL+H E+ + L+SVEYVVFDEAD LF MGFAEQL +I
Sbjct: 206 MEDQFAALHENPDIIIATPGRLVHVAVEM-SLKLQSVEYVVFDEADRLFEMGFAEQLQEI 264
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
+ +L QT+LFSATLP L EFA+AGL +P L+RLDVDTK++ LK +FF +R++ K
Sbjct: 265 IARLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSFFLVREDTKA 324
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
A LL+++R + QT++FV+TKHH E+L L + + + Y +D ARKI++++F
Sbjct: 325 AVLLHLLRNMVRPQDQTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKF 384
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
K LIVTD+AARG+DIPLLDNVIN+ FP K K+F+HRVGR ARAGR+GTA+S V
Sbjct: 385 TLGKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAP 444
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVS 432
+++ YLLDLHLFL + + A +E +A + + GR PQ+V+D
Sbjct: 445 DEIPYLLDLHLFLGRSLTLARPLKE------------PSGVAGVDGMLGRVPQSVVDEED 492
Query: 433 DRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK--DLPREGLHPMFKNVL 490
++ +++S +L L R NA + Y +++P PS ESI+R K DL GLHP+F +
Sbjct: 493 SGLQSTLEASLELRGLARVADNAQQQYVRSRPAPSPESIKRAKEMDLVGLGLHPLFSSRF 552
Query: 491 EGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKII-- 548
E EL L + +K +R + TI E A S+ L SQ VM+ KR K I
Sbjct: 553 EEEELQRLRLVDSIKNYRSRATIFEIN---ASSRDL---CSQ---VMRAKRQKDRKAIAR 603
Query: 549 ---NLVHQQRSSKSMEKEVEPEAD-------------------------SLMAKEIKETH 580
+Q + E V P S + ++
Sbjct: 604 FQQGQQGRQEQQEQQEGPVGPAPSRPALQEKQPEKEEEEEAGESVEDIFSEVVGRKRQRS 663
Query: 581 GSKRKAKTFK------DEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDS 634
G R AK + D+E++I P + E GLS+ + G + AVLDL+ D++
Sbjct: 664 GPNRGAKRRREEARQRDQEFYIPYRPKDFDSERGLSISGEGGAFEQQAAGAVLDLMGDEA 723
Query: 635 GGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSH 693
L + +Q WD++ K+++ G+ K +KTESG + ++ K +Y+KWK++
Sbjct: 724 QNLTRGRQQLKWDRKKKRFV----GQSGQEDKKKIKTESGRYISSSYKRDLYQKWKQK-- 777
Query: 694 KKVYLKGASNEGNAEETTSVPGGRHLGGNNRKFRGGKNQQRSVPNAHVCSEIKDLDQVRK 753
+K+ + + EG ++ P R + + + P V E+K Q+ K
Sbjct: 778 QKIDDRDSDEEGASDRRG--PERRGGKRDRGRAGASRPHAPGTPAGQVRPELKTKQQILK 835
Query: 754 ERQKKADRIAFMK 766
+R ++A ++ F++
Sbjct: 836 QR-RRAQKLRFLQ 847
>gi|321464010|gb|EFX75021.1| hypothetical protein DAPPUDRAFT_306922 [Daphnia pulex]
Length = 825
Score = 559 bits (1440), Expect = e-156, Method: Compositional matrix adjust.
Identities = 333/772 (43%), Positives = 466/772 (60%), Gaps = 86/772 (11%)
Query: 6 SKAELKRR----EKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGA 61
S+AEL R E+ +KK KSGGF+S+ LS NV+ + + GYK+PTPIQRK +PLI+
Sbjct: 14 SEAELDTRALVQEQNRKKKKSGGFQSMGLSYNVYHGVMKCGYKIPTPIQRKCIPLIMEKK 73
Query: 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121
DVVAMARTGSGKTA FL+P+ +RL H G RALI+SPTR+LALQTLKFT+ELG++T
Sbjct: 74 DVVAMARTGSGKTACFLIPLFERLQAH-STIGTRALIMSPTRELALQTLKFTRELGKFTG 132
Query: 122 LRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181
L+ + ++GGDSME+QF + + PDIIIATPGR H E+E + LK +EYVVFDEAD LF
Sbjct: 133 LKAATILGGDSMEAQFAAMHEIPDIIIATPGRFAHLCVEME-LKLKEIEYVVFDEADRLF 191
Query: 182 GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKL 241
MGF EQL +IL +L E RQTLLFSATLP L +F KAGL DP LVRLDVD+K+ LKL
Sbjct: 192 EMGFGEQLLEILNRLPELRQTLLFSATLPKLLVDFTKAGLTDPVLVRLDVDSKLPEALKL 251
Query: 242 AFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMD 301
F E K + LL+++R + S + TL+F +T HHVE+L++L + G+ + Y +D
Sbjct: 252 GFVFCPCESKASVLLHLLRNAVKSGELTLVFAATMHHVEYLHLLLDKAGISNTYIYSSLD 311
Query: 302 QDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAG 361
Q ARKIH ++F+ ++T +I TDVAARGIDIPLLDNVIN++FP K K+FVHRVGR ARAG
Sbjct: 312 QAARKIHAAKFQTKQTHVMITTDVAARGIDIPLLDNVINYNFPAKAKLFVHRVGRVARAG 371
Query: 362 RTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYG 421
R+G A+S V +++ L+DLHLFL +P++ P DG+ +D + G
Sbjct: 372 RSGCAYSLVALDELPALVDLHLFLGRPVKQIPQ--------DGLGKDVDW-----DGFLG 418
Query: 422 RFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPRE- 480
R QTVID S + S +L ++ + T+A++ Y ++ P PS ES+++ K++ E
Sbjct: 419 RVGQTVIDDGSSAMTLWHQESVELQNMIKVYTSAYKQYKRSCPPPSHESVKKAKEIKLEL 478
Query: 481 -GLHPMFKNVLEGGELMA--LAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVM 537
G HP+F V E EL L E++K++RP TI E A K VM
Sbjct: 479 LGPHPVF--VAESSELEGDRLNLLEQMKSYRPHHTIFEIGVTANSVK---------AKVM 527
Query: 538 KKKRAVHEKII----NLVHQQRSSKSMEKEVEPEADSLMAKEIKE--------------- 578
+KR H++II N +Q +K + EPE+ + +E E
Sbjct: 528 LEKRIKHQRIIIKQKNANMKQSETKPSD---EPESSGVPQEEANEELVQEAFSTVIAQKK 584
Query: 579 ---------THGSKRK--AKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEA-AV 626
KR+ +T KDEE +I+ +H E+GL++ D G R A AV
Sbjct: 585 RTSRKPFDPNQSKKRRLQPQTTKDEENYINYNSKDHQTESGLALGCDFG----RAAADAV 640
Query: 627 LDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIY 685
LDL DD L+KQ+ + WD++ KK+I ++ ++ + ++TESG + AT KT Y
Sbjct: 641 LDLTGDDDQELRKQRSLLKWDRKKKKFIGEDDTKK-----RKIRTESGVWIPATYKTDRY 695
Query: 686 KKWKERSHKKVYLKGASNEGNAEETTSVPGGRHLGGNNRKFRGGKNQQRSVP 737
++WK++S + + G+ E+ G R+ +F GG Q+R +P
Sbjct: 696 ERWKDKSKVDQNDPASEDSGDDEKV----GNRNAPA---RFDGG-YQRRGIP 739
>gi|297693028|ref|XP_002823828.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX54
[Pongo abelii]
Length = 883
Score = 559 bits (1440), Expect = e-156, Method: Compositional matrix adjust.
Identities = 333/792 (42%), Positives = 471/792 (59%), Gaps = 70/792 (8%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
R + KKK KSGGF+S+ LS VF+ I +KGYKVPTPIQRKT+P+IL G DVVAMARTGSG
Sbjct: 86 RAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSG 145
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTA FL+PM +RL H Q G RALILSPTR+LALQTLKFTKELG++T L+ +L++GGD
Sbjct: 146 KTACFLLPMFERLKTHSAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDR 205
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
ME QF L +NPDIIIATPGRL+H E+ ++ L+SVEYVVFDEAD LF MGFAEQL +I
Sbjct: 206 MEDQFAALHENPDIIIATPGRLVHVAVEM-NLKLQSVEYVVFDEADRLFEMGFAEQLQEI 264
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
+ +L QT+LFSATLP L EFA+AGL +P L+RLDVDTK++ LK +FF +R++ K
Sbjct: 265 IARLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSFFLVREDTKA 324
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
A LL+++R + QT++FV+TKHH E+L L + + + Y +D ARKI++++F
Sbjct: 325 AVLLHLLRNVVRPQDQTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKF 384
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
K LIVTD+AARG+DIPLLDNVIN+ FP K K+F+HRVGR ARAGR+GTA+S V
Sbjct: 385 TLGKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAP 444
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVS 432
+++ YLLDLHLFL + + A EE +A + + GR PQ+V+D
Sbjct: 445 DEIPYLLDLHLFLGRSLTLARPLEE------------PSGVAGVDGMLGRVPQSVVDEED 492
Query: 433 DRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK--DLPREGLHPMFKNVL 490
++ +++S +L L R NA + Y +++P PS ESI+R K D GLHP+F +
Sbjct: 493 SGLQSTLEASLELRGLARVADNAQQQYVRSRPAPSPESIKRAKEMDFVGLGLHPLFSSHF 552
Query: 491 EGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKII-- 548
E EL L + +K++R + TI E A S+ L VM+ KR K I
Sbjct: 553 EEEELQRLRLVDSIKSYRSRATIFEIN---ASSRDL------CRQVMRAKRQRDLKAIAR 603
Query: 549 -----------------------NLVHQQRSSKSMEKEVEPEADSLMAKEI----KETHG 581
L +Q + EKE E+ + E+ ++ G
Sbjct: 604 FQQEQQGRQEQQEGPVGPALSRPALQEKQPEKEEEEKEEAGESVEDIFSEVVGRKRQRSG 663
Query: 582 SKRKAKTFK------DEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSG 635
R AK + D+E++I P + E GLS+ + G + AVLDL+ D++
Sbjct: 664 PNRGAKRRREEARQRDQEFYIPYRPKDFDSERGLSISGEGGAFEQQAAGAVLDLMGDEAQ 723
Query: 636 GLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHK 694
L + +Q WD++ K+++ G+ K +KTESG + ++ K +Y+KWK++ +
Sbjct: 724 NLMRGQQQLKWDRKKKRFV----GQSGQEDKKKIKTESGRYISSSYKRDLYQKWKQK--Q 777
Query: 695 KVYLKGASNEGNAEETTSVPGGRHLGGNNRKFRGGKNQQRSVPNAHVCSEIKDLDQVRKE 754
K+ + + EG ++ R G + P V E+K Q+ K+
Sbjct: 778 KIDDRDSDEEGASDRRGPE---RRGGKRGGGQGASRPHAPGTPAGRVRPELKTKQQILKQ 834
Query: 755 RQKKADRIAFMK 766
R ++A ++ F++
Sbjct: 835 R-RRAQKLRFLQ 845
>gi|167518760|ref|XP_001743720.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777682|gb|EDQ91298.1| predicted protein [Monosiga brevicollis MX1]
Length = 787
Score = 558 bits (1439), Expect = e-156, Method: Compositional matrix adjust.
Identities = 324/801 (40%), Positives = 464/801 (57%), Gaps = 101/801 (12%)
Query: 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPML 82
G F+++ LS V RAI RKGYKVPTPIQRKT+PL+++G DVVAMARTGSGKTAAFL+P+
Sbjct: 2 GAFQAMGLSQAVARAINRKGYKVPTPIQRKTIPLLMAGQDVVAMARTGSGKTAAFLIPLF 61
Query: 83 QRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
+RL H + G+RAL+LSPTR+LALQT KF KELGR++DLR L++GGDSM+SQF ++
Sbjct: 62 ERLKNHSARVGIRALVLSPTRELALQTFKFVKELGRFSDLRSILILGGDSMDSQFGDMHT 121
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
NPDI++ATPGR +H + E+E +SL + EYVVFDEAD LF MGFAEQL +I+ +L + RQT
Sbjct: 122 NPDIVVATPGRFLHLIVEME-LSLVTTEYVVFDEADRLFEMGFAEQLREIMARLPDTRQT 180
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
LFSATLP L +FA+AGL++P LVRLD DTK+ L+ FF R+E+K A LLY +RE
Sbjct: 181 TLFSATLPKVLVDFARAGLKEPALVRLDADTKLPEQLQTQFFHCRREDKPALLLYALREI 240
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
I + T+IFV+TKHHVEFL L + E + YG +D ARKI+V++FR K L+V
Sbjct: 241 IPKGKLTVIFVATKHHVEFLRELLAKANFESTYSYGSLDPTARKINVAKFRNGKAPILLV 300
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
TDVAARGIDIP+LD VIN+DFP PK+FVHRVGR ARAGR+GTA+SF+ ++++ Y++DLH
Sbjct: 301 TDVAARGIDIPMLDYVINYDFPAAPKLFVHRVGRVARAGRSGTAYSFIGNDELPYVVDLH 360
Query: 383 LFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSS 442
+FL + + P+ + + DG ++G PQ+V+D + V + S
Sbjct: 361 VFLGRKFK--PALKRSKREEDG--------------LFGAVPQSVLDEDREAVESHLKGS 404
Query: 443 ADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREG--LHPMFKNVLEGGELMALAF 500
DL SL + N+++ Y +++P + ES++R K + G LHP F + + GEL
Sbjct: 405 VDLQSLHKVMINSYKNYDRSRPQAATESVKRSKQVEEIGYQLHPEFLSRIATGELEKETV 464
Query: 501 SERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQR----- 555
+ L F+P QT+ E + P+ + +M +KRA HE+ + V ++R
Sbjct: 465 LKALSRFKPSQTVFEVN---------KKPTDPVLLMMSEKRATHEQYRHNVTERRKELLQ 515
Query: 556 --------------SSKSMEKEVE--------------------PEADSLMAK---EIKE 578
+S +E+ PEA + K + E
Sbjct: 516 QADWMKDRTASLNQTSDGLEQATGDDLIEAFSTIVAPGRNKAGLPEAAIAVTKGQRAVGE 575
Query: 579 THGSKRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEA-AVLDLVADDSGGL 637
+ + ++ F+ TN H E G +++ +G R A A DL DD+ +
Sbjct: 576 ASAGVTITRAKEADDVFVPYRATNTHDERGYAMQ--EGGSFARASAQATFDLTGDDNQTM 633
Query: 638 QKQKQVYHWDKRGKKYIKLNNGERVSASG--KVVKTESGAKVKAT-KTGIYKKWKERSHK 694
Q Q WD+R KK+ V ASG K++KTE+G K+ AT ++ Y++W ++H
Sbjct: 634 HSQSQQKQWDRRKKKF--------VGASGDKKMIKTEAGNKIPATYRSNRYEEWSSKNHA 685
Query: 695 KVYLKGASNE-----------------GNAEETTSVPGGRHLGGNNRKFRGGKNQQRSVP 737
G + + S P G G +++ + G QQ
Sbjct: 686 DKQRPGEEEDERQVKRWHKDPRERRRGWHKSGAPSEPEGDFGGPPSKRGKQGGRQQGPPS 745
Query: 738 NAHVCSEIKDLDQVRKERQKK 758
A E++ DQ+ KER+++
Sbjct: 746 KAKRGGELRPKDQILKERKRR 766
>gi|397525044|ref|XP_003832488.1| PREDICTED: ATP-dependent RNA helicase DDX54 [Pan paniscus]
Length = 884
Score = 557 bits (1436), Expect = e-156, Method: Compositional matrix adjust.
Identities = 322/735 (43%), Positives = 447/735 (60%), Gaps = 67/735 (9%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
R + KKK KSGGF+S+ LS VF+ I +KGYKVPTPIQRKT+P+IL G DVVAMARTGSG
Sbjct: 86 RAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSG 145
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTA FL+PM +RL H Q G RALILSPTR+LALQTLKFTKELG++T L+ +L++GGD
Sbjct: 146 KTACFLLPMFERLKTHSAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDR 205
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
ME QF L +NPDIIIATPGRL+H E+ + L+SVEYVVFDEAD LF MGFAEQL +I
Sbjct: 206 MEDQFAALHENPDIIIATPGRLVHVAVEM-SLKLQSVEYVVFDEADRLFEMGFAEQLQEI 264
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
+ +L QT+LFSATLP L EFA+AGL +P L+RLDVDTK++ LK +FF +R++ K
Sbjct: 265 IARLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSFFLVREDTKA 324
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
A LL+++R + QT++FV+TKHH E+L L + + + Y +D ARKI++++F
Sbjct: 325 AVLLHLLRNMVRPQDQTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKF 384
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
K LIVTD+AARG+DIPLLDNVIN+ FP K K+F+HRVGR ARAGR+GTA+S V
Sbjct: 385 TLGKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAP 444
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVS 432
+++ YLLDLHLFL + + A +E +A + + GR PQ+V+D
Sbjct: 445 DEIPYLLDLHLFLGRSLTLARPLKE------------PSGVAGVDGMLGRVPQSVVDEED 492
Query: 433 DRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK--DLPREGLHPMFKNVL 490
++ +++S +L L R NA + Y +++P PS ESI+R K DL GLHP+F +
Sbjct: 493 SGLQSTLEASLELRGLARVADNAQQQYVRSRPAPSPESIKRAKEMDLVGLGLHPLFSSRF 552
Query: 491 EGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKII-- 548
E EL L + +K +R + TI E A S+ L SQ VM+ KR K I
Sbjct: 553 EEEELQRLRLVDSIKNYRSRATIFEIN---ASSRDL---CSQ---VMRAKRQKDRKAIAR 603
Query: 549 ---NLVHQQRSSKSMEKEVEPEAD-------------------------SLMAKEIKETH 580
+Q + E V P S + ++
Sbjct: 604 FQQGQQGRQEQQEQQEGPVGPAPSRPALQEKQPEKEEEEEAGEGVEDIFSEVVGRKRQRS 663
Query: 581 GSKRKAKTFK------DEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDS 634
G R AK + D+E++I P + E GLS+ + G + AVLDL+ D++
Sbjct: 664 GPNRGAKRRREEARQRDQEFYIPYRPKDFDSERGLSISGEGGAFEQQAAGAVLDLMGDEA 723
Query: 635 GGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSH 693
L + +Q WD++ K+++ G+ K +KTESG + ++ K +Y+KWK++
Sbjct: 724 QNLTRGRQQLKWDRKKKRFV----GQSGQEDKKKIKTESGRYISSSYKRDLYQKWKQK-- 777
Query: 694 KKVYLKGASNEGNAE 708
+K+ + + EG ++
Sbjct: 778 QKIDDRDSDEEGASD 792
>gi|114647100|ref|XP_001152281.1| PREDICTED: ATP-dependent RNA helicase DDX54 isoform 5 [Pan
troglodytes]
Length = 884
Score = 557 bits (1436), Expect = e-156, Method: Compositional matrix adjust.
Identities = 322/735 (43%), Positives = 447/735 (60%), Gaps = 67/735 (9%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
R + KKK KSGGF+S+ LS VF+ I +KGYKVPTPIQRKT+P+IL G DVVAMARTGSG
Sbjct: 86 RAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSG 145
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTA FL+PM +RL H Q G RALILSPTR+LALQTLKFTKELG++T L+ +L++GGD
Sbjct: 146 KTACFLLPMFERLKTHSAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDR 205
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
ME QF L +NPDIIIATPGRL+H E+ + L+SVEYVVFDEAD LF MGFAEQL +I
Sbjct: 206 MEDQFAALHENPDIIIATPGRLVHVAVEM-SLKLQSVEYVVFDEADRLFEMGFAEQLQEI 264
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
+ +L QT+LFSATLP L EFA+AGL +P L+RLDVDTK++ LK +FF +R++ K
Sbjct: 265 IARLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSFFLVREDTKA 324
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
A LL+++R + QT++FV+TKHH E+L L + + + Y +D ARKI++++F
Sbjct: 325 AVLLHLLRNMVRPQDQTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKF 384
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
K LIVTD+AARG+DIPLLDNVIN+ FP K K+F+HRVGR ARAGR+GTA+S V
Sbjct: 385 TLGKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAP 444
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVS 432
+++ YLLDLHLFL + + A +E +A + + GR PQ+V+D
Sbjct: 445 DEIPYLLDLHLFLGRSLTLARPLKE------------PSGVAGVDGMLGRVPQSVVDEED 492
Query: 433 DRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK--DLPREGLHPMFKNVL 490
++ +++S +L L R NA + Y +++P PS ESI+R K DL GLHP+F +
Sbjct: 493 SGLQSTLEASLELRGLARVADNAQQQYVRSRPAPSPESIKRAKEMDLVGLGLHPLFSSRF 552
Query: 491 EGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKII-- 548
E EL L + +K +R + TI E A S+ L SQ VM+ KR K I
Sbjct: 553 EEEELQRLRLVDSIKNYRSRATIFEIN---ASSRDL---CSQ---VMRAKRQKDRKAIAR 603
Query: 549 ---NLVHQQRSSKSMEKEVEPEAD-------------------------SLMAKEIKETH 580
+Q + E V P S + ++
Sbjct: 604 FQQGQQGRQEQQEQQEGPVGPAPSRPALQEKQPEKEEEEEAGESVEDIFSEVVGRKRQRS 663
Query: 581 GSKRKAKTFK------DEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDS 634
G R AK + D+E++I P + E GLS+ + G + AVLDL+ D++
Sbjct: 664 GPNRGAKRRREEARQRDQEFYIPYRPKDFDSERGLSISGEGGAFEQQAAGAVLDLMGDEA 723
Query: 635 GGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSH 693
L + +Q WD++ K+++ G+ K +KTESG + ++ K +Y+KWK++
Sbjct: 724 QNLTRGRQQLKWDRKKKRFV----GQSGQEDKKKIKTESGRYISSSYKRDLYQKWKQK-- 777
Query: 694 KKVYLKGASNEGNAE 708
+K+ + + EG ++
Sbjct: 778 QKIDDRDSDEEGASD 792
>gi|383421509|gb|AFH33968.1| ATP-dependent RNA helicase DDX54 isoform 1 [Macaca mulatta]
Length = 884
Score = 557 bits (1435), Expect = e-156, Method: Compositional matrix adjust.
Identities = 324/734 (44%), Positives = 452/734 (61%), Gaps = 66/734 (8%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
R + KKK KSGGF+S+ LS VF+ I +KGYKVPTPIQRKT+P+IL G DVVAMARTGSG
Sbjct: 86 RAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSG 145
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTA FL+PM +RL H Q G RALILSPTR+LALQTLKFTKELG++T L+ +L++GGD
Sbjct: 146 KTACFLLPMFERLKTHSAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDR 205
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
ME QF L +NPDIIIATPGRL+H E+ ++ L+SVEYVVFDEAD LF MGFAEQL +I
Sbjct: 206 MEDQFAALHENPDIIIATPGRLVHVAVEM-NLKLQSVEYVVFDEADRLFEMGFAEQLQEI 264
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
+ +L QT+LFSATLP L EFA+AGL +P L+RLDVDTK++ LK +FF +R++ K
Sbjct: 265 IARLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSFFLVREDTKA 324
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
A LL+++R + QT++FV+TKHH E+L L + + + Y +D ARKI++++F
Sbjct: 325 AVLLHLLRNVVRPQDQTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKF 384
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
K LIVTD+AARG+DIPLLDNVIN+ FP K K+F+HRVGR ARAGR+GTA+S V
Sbjct: 385 TLGKCSALIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAP 444
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVS 432
+++ YLLDLHLFL + + A L D G A + + GR PQ+V+D
Sbjct: 445 DEIPYLLDLHLFLGRSLALA----RPLEDPSGA--------AGVDGMLGRVPQSVVDEED 492
Query: 433 DRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK--DLPREGLHPMFKNVL 490
++ +++S +L L R NA + Y +++P PS ESI+R K DL GLHP+F +
Sbjct: 493 SGLQSTLEASLELRGLARVADNAQQQYVRSRPAPSPESIKRAKELDLVGLGLHPLFSSRF 552
Query: 491 EGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINL 550
E EL L + +K +R + TI E A S+ L SQ VM+ KR K I
Sbjct: 553 EEEELQRLRLVDSIKNYRSRATIFEIN---ASSRDL---CSQ---VMRAKRQKDHKAIAR 603
Query: 551 VHQQRSSKSMEKEV----EPEADSLMAKEI-------------------------KETHG 581
Q + + ++E P +L K+ ++ G
Sbjct: 604 FQQGQQGRQEQQEGPVGPAPSCPALQEKQPEKEEEEEEEARESVEDIFSEVMGRKRQRSG 663
Query: 582 SKRKAKTF------KDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSG 635
R AK +D+E++I P + E GLS+ + G ++ AVLDL+ D++
Sbjct: 664 PNRGAKRRREEAWERDQEFYIPYRPKDFDSERGLSISGEGGAFEQQVAGAVLDLMGDEAQ 723
Query: 636 GLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHK 694
L + +Q WD++ K+++ G+ K +KTESG + ++ K +Y+KWK++ +
Sbjct: 724 NLTRGRQQLKWDRKKKRFV----GKSGQEDKKKIKTESGRYINSSYKRDLYQKWKQK--Q 777
Query: 695 KVYLKGASNEGNAE 708
K+ + + EG ++
Sbjct: 778 KIDDRDSDEEGASD 791
>gi|109098826|ref|XP_001111246.1| PREDICTED: ATP-dependent RNA helicase DDX54 isoform 2 [Macaca
mulatta]
Length = 883
Score = 557 bits (1435), Expect = e-156, Method: Compositional matrix adjust.
Identities = 336/792 (42%), Positives = 474/792 (59%), Gaps = 70/792 (8%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
R + KKK KSGGF+S+ LS VF+ I +KGYKVPTPIQRKT+P+IL G DVVAMARTGSG
Sbjct: 86 RAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSG 145
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTA FL+PM +RL H Q G RALILSPTR+LALQTLKFTKELG++T L+ +L++GGD
Sbjct: 146 KTACFLLPMFERLKTHSAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDR 205
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
ME QF L +NPDIIIATPGRL+H E+ ++ L+SVEYVVFDEAD LF MGFAEQL +I
Sbjct: 206 MEDQFAALHENPDIIIATPGRLVHVAVEM-NLKLQSVEYVVFDEADRLFEMGFAEQLQEI 264
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
+ +L QT+LFSATLP L EFA+AGL +P L+RLDVDTK++ LK +FF +R++ K
Sbjct: 265 IARLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSFFLVREDTKA 324
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
A LL+++R + QT++FV+TKHH E+L L + + + Y +D ARKI++++F
Sbjct: 325 AVLLHLLRNVVRPQDQTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKF 384
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
K LIVTD+AARG+DIPLLDNVIN+ FP K K+F+HRVGR ARAGR+GTA+S V
Sbjct: 385 TLGKCSALIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVVP 444
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVS 432
+++ YLLDLHLFL + + A L D G A + + GR PQ+V+D
Sbjct: 445 DEIPYLLDLHLFLGRSLALA----RPLEDPSGA--------AGVDGMLGRVPQSVVDEED 492
Query: 433 DRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK--DLPREGLHPMFKNVL 490
++ +++S +L L R NA + Y +++P PS ESI+R K DL GLHP+F +
Sbjct: 493 SGLQSTLEASLELRGLARVADNAQQQYVRSRPAPSPESIKRAKELDLVGLGLHPLFSSRF 552
Query: 491 EGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINL 550
E EL L + +K +R + TI E A S+ L SQ VM+ KR K I
Sbjct: 553 EEEELQRLRLVDSIKNYRSRATIFEIN---ASSRDL---CSQ---VMRAKRQKDHKAIAR 603
Query: 551 VHQQRSSKSMEKEV----EPEADSLMAKEI-------------------------KETHG 581
Q + + ++E P +L K+ ++ G
Sbjct: 604 FQQGQQGRQEQQEGPVGPAPSCPALQEKQPEKEEEEEEEAGESVEDIFSEVMGRKRQRSG 663
Query: 582 SKRKAKTF------KDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSG 635
R AK +D+E++I P + E GLS+ + G ++ AVLDL+ D++
Sbjct: 664 PNRGAKRRREEAWQRDQEFYIPYRPKDFDSERGLSISGEGGAFEQQVAGAVLDLMGDEAQ 723
Query: 636 GLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHK 694
L + +Q WD++ K+++ G+ K +KTESG + ++ K +Y+KWK++ +
Sbjct: 724 NLTRGRQQLKWDRKKKRFV----GKSGQEDKKKIKTESGRYINSSYKRDLYQKWKQK--Q 777
Query: 695 KVYLKGASNEGNAEETTSVPGGRHLGGNNRKFRGGKNQQRSVPNAHVCSEIKDLDQVRKE 754
K+ + + EG ++ R G R + P V E+K Q+ K+
Sbjct: 778 KIDDRDSDEEGASDRRGPE---RRGGKRGRGQGASRPHTPGTPAGCVRPELKTKQQILKQ 834
Query: 755 RQKKADRIAFMK 766
R ++A ++ F++
Sbjct: 835 R-RRAQKLRFLQ 845
>gi|402887738|ref|XP_003907240.1| PREDICTED: ATP-dependent RNA helicase DDX54 [Papio anubis]
Length = 883
Score = 556 bits (1433), Expect = e-155, Method: Compositional matrix adjust.
Identities = 324/734 (44%), Positives = 451/734 (61%), Gaps = 66/734 (8%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
R + KKK KSGGF+S+ LS VF+ I +KGYKVPTPIQRKT+P+IL G DVVAMARTGSG
Sbjct: 86 RAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSG 145
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTA FL+PM +RL H Q G RALILSPTR+LALQTLKFTKELG++T L+ +L++GGD
Sbjct: 146 KTACFLLPMFERLKTHSAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDR 205
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
ME QF L +NPDIIIATPGRL+H E+ ++ L+SVEYVVFDEAD LF MGFAEQL +I
Sbjct: 206 MEDQFAALHENPDIIIATPGRLVHVAVEM-NLKLQSVEYVVFDEADRLFEMGFAEQLQEI 264
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
+ +L QT+LFSATLP L EFA+AGL +P L+RLDVDTK++ LK +FF +R++ K
Sbjct: 265 IARLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSFFLVREDTKA 324
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
A LL+++R + QT++FV+TKHH E+L L + + + Y +D ARKI++++F
Sbjct: 325 AVLLHLLRNVVRPQDQTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKF 384
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
K LIVTD+AARG+DIPLLDNVIN+ FP K K+F+HRVGR ARAGR+GTA+S V
Sbjct: 385 TLGKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAP 444
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVS 432
+++ YLLDLHLFL + + A L D G A + + GR PQ+V+D
Sbjct: 445 DEIPYLLDLHLFLGRSLALA----RPLEDPSGA--------AGVDGMLGRVPQSVVDEED 492
Query: 433 DRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK--DLPREGLHPMFKNVL 490
++ +++S +L L R NA + Y +++P PS ESI+R K DL GLHP+F
Sbjct: 493 SGLQSTLEASLELRGLARVADNAQQQYVRSRPAPSPESIKRAKELDLVGLGLHPLFSLRF 552
Query: 491 EGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINL 550
E EL L + +K +R + TI E A S+ L SQ VM+ KR K I
Sbjct: 553 EEEELQRLRLVDSIKNYRSRATIFEIN---ASSRDL---CSQ---VMRAKRQKDHKAIAR 603
Query: 551 VHQQRSSKSMEKEV----EPEADSLMAKEI-------------------------KETHG 581
Q + + ++E P +L K+ ++ G
Sbjct: 604 FQQGQQGRQEQQEGPVGPAPSCPALQEKQPEKEEEEEEEAGESVEDIFSEVMGRKRQRSG 663
Query: 582 SKRKAKTF------KDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSG 635
R AK +D+E++I P + E GLS+ + G ++ AVLDL+ D++
Sbjct: 664 PNRGAKRRREEAWQRDQEFYIPYRPKDFDSERGLSISGEGGAFEQQVAGAVLDLMGDEAQ 723
Query: 636 GLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHK 694
L + +Q WD++ K+++ G+ K +KTESG + ++ K +Y+KWK++ +
Sbjct: 724 NLTRGRQQLKWDRKKKRFV----GKSGQEDKKKIKTESGRYINSSYKRDLYQKWKQK--Q 777
Query: 695 KVYLKGASNEGNAE 708
K+ + + EG ++
Sbjct: 778 KIDDRDSDEEGASD 791
>gi|148687811|gb|EDL19758.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 [Mus musculus]
Length = 855
Score = 555 bits (1430), Expect = e-155, Method: Compositional matrix adjust.
Identities = 330/789 (41%), Positives = 468/789 (59%), Gaps = 93/789 (11%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
R + KKK KSGGF+S+ LS VF+ I +KGYKVPTPIQRKT+P+IL G DVVAMARTGSG
Sbjct: 87 RAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSG 146
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTA FL+PM +RL Q G RALILSPTR+LALQT+KFTKELG++T L+ +L++GGD
Sbjct: 147 KTACFLLPMFERLKARSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDK 206
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
ME QF L +NPDIIIATPGRL+H E+ ++ L+SVEYVVFDEAD LF MGFAEQL +I
Sbjct: 207 MEDQFAALHENPDIIIATPGRLVHVAVEM-NLKLQSVEYVVFDEADRLFEMGFAEQLQEI 265
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
+G+L QT+LFSATLP L EFA+AG +F +R++ K
Sbjct: 266 IGRLPGGHQTVLFSATLPKLLVEFARAG---------------------SFLLVREDTKA 304
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
A LLY+++ + QT++FV+TKHH E+L L +G+ + Y +DQ ARKI++++F
Sbjct: 305 AVLLYLLQNVVRPQDQTVVFVATKHHAEYLTELLMGQGVSCAHIYSALDQTARKINLAKF 364
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
K LIVTD+AARG+DIPLLDNVIN+ FP K K+F+HRVGR ARAGR+GTA+S V
Sbjct: 365 THNKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAP 424
Query: 373 EDMAYLLDLHLFLSKPIRAA-PSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLV 431
+++ YLLDLHLFL + + A P EE + D G + + GR PQ+V+D
Sbjct: 425 DEVPYLLDLHLFLGRSVTLARPCEEPSVADAVGR-----------DGVLGRVPQSVVDDE 473
Query: 432 SDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK--DLPREGLHPMFKNV 489
++ + +S DL L R NA + Y +++P PS ESI+R K DL GLHP+F +
Sbjct: 474 DSSLQTAMGASLDLQGLHRVANNAQQQYVRSRPAPSPESIKRAKELDLAELGLHPLFSSC 533
Query: 490 LEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIIN 549
E GEL L + +K +R + TI E A SK PSSQ +M+ KR K +
Sbjct: 534 FEEGELQRLRLVDSIKNYRTRTTIFEIN---ASSKD---PSSQ---MMRAKRQRDRKAVA 584
Query: 550 LVHQQRSSKSMEKEVEPEADSLMAKEIKE---------------------------THGS 582
Q+R + E AD +E+ + + G+
Sbjct: 585 SFQQRRQERQ-----EGPADPAPQRELPQEEEEEMVETVEGVFTEVVGQKRPRPGPSQGA 639
Query: 583 KRKAKTF--KDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQ 640
KR+ +D+E+++ P + E GLSV G ++ AVLDL+ D++ + +
Sbjct: 640 KRRRMETRQRDQEFYVPYRPKDFDSERGLSVSGAGGAFEQQVAGAVLDLMGDEAQNMSRG 699
Query: 641 KQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLK 699
+Q WD++ K+++ G+ K +KTESG + ++ K +Y+KWK++ +K+ +
Sbjct: 700 QQQLKWDRKKKRFV----GQSGQEDKKKIKTESGRFISSSYKRDLYQKWKQK--QKIDDR 753
Query: 700 GASNEGNAEETTSVPGGRHLGGNNRKFRGGKNQQR--SVPNAHVCSEIKDLDQVRKERQK 757
+ EG + + P G ++ G +Q R SVP + SE+K +Q+ K+R +
Sbjct: 754 DSEEEGPSNQRGPGPRRGGKRGRSQ----GTSQPRASSVPAGRMRSELKTKEQILKQR-R 808
Query: 758 KADRIAFMK 766
+A + F++
Sbjct: 809 QAQKQRFLQ 817
>gi|441629962|ref|XP_003274471.2| PREDICTED: ATP-dependent RNA helicase DDX54 [Nomascus leucogenys]
Length = 862
Score = 555 bits (1430), Expect = e-155, Method: Compositional matrix adjust.
Identities = 320/730 (43%), Positives = 445/730 (60%), Gaps = 63/730 (8%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
R + KKK KSGGF+S+ LS VF+ I +KGYKVPTPIQRKT+P+IL G DVVAMARTGSG
Sbjct: 70 RAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSG 129
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTA FL+PM +RL H Q G RALILSPTR+LALQTLKFTKELG++T L+ +L++GGD
Sbjct: 130 KTACFLLPMFERLKTHSAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDR 189
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
ME QF L +NPD IIATPGRL+H E+ ++ L+SVEYVVFDEAD LF MGFAEQL +I
Sbjct: 190 MEDQFAALHENPDTIIATPGRLVHVAVEM-NLKLQSVEYVVFDEADRLFEMGFAEQLQEI 248
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
+ +L QT+LFSATLP L EFA+AGL +P L+RLDVDTK++ LK +FF +R++ K
Sbjct: 249 ITRLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSFFLVREDTKA 308
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
A LL+++R + QT++FV+TKHH E+L L + + + Y +D ARKI++++F
Sbjct: 309 AVLLHLLRNVVRPQDQTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKF 368
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
K LIVTD+AARG+DIPLLDNVIN+ FP K K+F+HRVGR ARAGR+GTA+S V
Sbjct: 369 TLGKCSALIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAP 428
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVS 432
+++ YLLDLHLFL + + A EE +A + + GR PQ+V+D
Sbjct: 429 DEIPYLLDLHLFLGRSLTLARPLEE------------PSGVAGVDGMLGRVPQSVVDEED 476
Query: 433 DRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK--DLPREGLHPMFKNVL 490
++ +++S +L L NA + Y +++P PS ESI+R K DL GLHP+F +
Sbjct: 477 SGLQSTLEASLELRGLAHVADNAQQQYVRSRPAPSPESIKRAKEMDLVGLGLHPLFSSRF 536
Query: 491 EGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINL 550
E EL L + +K +R + TI E A S+ L SQ VM+ KR K +
Sbjct: 537 EEEELQRLRLVDSIKNYRSRATIFEIN---ASSRDL---CSQ---VMRAKRQKDRKAVAR 587
Query: 551 VHQQRSSKSMEKEVEPEAD-------------------------SLMAKEIKETHGSKRK 585
Q + E V P S + ++ G R
Sbjct: 588 FQQG-RQEQQEGPVGPAPSRPALQEKQPEEEEEEEAGESVEDIFSEVVGRKRQRSGPNRG 646
Query: 586 AK------TFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQK 639
AK +D+E++I P + E GLS+ + G + AVLDL+ D++ L +
Sbjct: 647 AKRQREEARQRDQEFYIPYRPKDFDSERGLSISREGGAFEQQAAGAVLDLMGDEAQNLTR 706
Query: 640 QKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYL 698
+Q WD++ K+++ G+ K +KTESG + ++ K +Y+KWK++ +K+
Sbjct: 707 GRQQLKWDRKKKRFV----GQSGQEDKKKIKTESGRYISSSYKRDLYQKWKQK--QKIDD 760
Query: 699 KGASNEGNAE 708
+ + EG ++
Sbjct: 761 RDSDEEGASD 770
>gi|308805432|ref|XP_003080028.1| Predicted ATP-dependent RNA helicase FAL1, involved in rRNA
maturation, DEAD-box superfamily (ISS) [Ostreococcus
tauri]
gi|116058487|emb|CAL53676.1| Predicted ATP-dependent RNA helicase FAL1, involved in rRNA
maturation, DEAD-box superfamily (ISS) [Ostreococcus
tauri]
Length = 1222
Score = 554 bits (1428), Expect = e-155, Method: Compositional matrix adjust.
Identities = 316/733 (43%), Positives = 444/733 (60%), Gaps = 66/733 (9%)
Query: 11 KRREKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTG 70
+R + KKK SGGFES+ + P VFRA+KRKGY+VPTPIQRK +P L G DVVAMARTG
Sbjct: 454 RRTLEAKKKKSSGGFESMEILPEVFRAVKRKGYRVPTPIQRKAIPPALEGRDVVAMARTG 513
Query: 71 SGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGG 130
SGKTAAFL+P+L +L H + G T F KEL ++T+LR++ LVGG
Sbjct: 514 SGKTAAFLIPVLSKLRTHSFESGC----------TVRGTFAFAKELSKFTNLRVAALVGG 563
Query: 131 DSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLH 190
DSME+QF +L+ NPDII+ATPGRL+HH+ EV+ +L++V +VV DE +G+ +
Sbjct: 564 DSMEAQFADLSNNPDIIVATPGRLLHHVEEVKAFTLRTVCHVVLDER-----IGYWRWV- 617
Query: 191 KILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE 250
+ TLLFSATLPSALAEF + GLR+P +VRLD + KIS DLK++F +R +E
Sbjct: 618 --------SGSTLLFSATLPSALAEFVRVGLREPEVVRLDAEMKISTDLKMSFILMRNDE 669
Query: 251 KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVS 310
K AALLYM+RE I QQT++F ST+HHVE+L+ L EG+ S YG MD ARK+ +S
Sbjct: 670 KVAALLYMLREVIPKGQQTVVFASTRHHVEWLHNLLEFEGVRVSSIYGSMDMMARKMALS 729
Query: 311 RFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFV 370
+FRA+K L+VTDVAARGIDIPLLDNVIN+DFP K K+FVHRVGR ARAGRTG A SF+
Sbjct: 730 KFRAKKADVLMVTDVAARGIDIPLLDNVINYDFPSKGKLFVHRVGRVARAGRTGNAHSFL 789
Query: 371 TSEDMAYLLDLHLFLSKPIRAA----PSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQT 426
E++ +L+DLHLFL + I AA P+ E A + +I G P
Sbjct: 790 VKEELGFLVDLHLFLGRKIAAASKLPPNSTEE------AAEIARAADESATSIIGTCPLG 843
Query: 427 VIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMF 486
+D+ DR+RE++ +L ++R +NA++LY KT+ S ES+ R + L G HP+
Sbjct: 844 ALDMTVDRLRELMKERDELEGMERAASNAYKLYQKTRGAASSESMSRAQPLIHAGPHPLL 903
Query: 487 KNVLEGG------ELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKK 540
GG EL + S ++A+RP+ T+LEAE +A + ++ M++K
Sbjct: 904 --CASGGVDATTQELAQITAS--IRAYRPQATVLEAEVASATKVNGSMRLTETSRAMQQK 959
Query: 541 RAVHEKIINLVHQQRSSKSMEKEVEPEADSLMAKEIKETH----GSKRKAKT-------- 588
R EK I + ++ K E D ++ +E + G+ +A
Sbjct: 960 RLKDEKFIKAKREGKTIKGRALRPLGEDDPILNQEGLDNDVNDGGADYEAMAAPAEDAFN 1019
Query: 589 ---FKDEEYFISSVP-TNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVY 644
F+D+++F+ + P +H E GLS R + +G LE A +DLV +D G+ +QK++Y
Sbjct: 1020 TGKFRDQDFFLDNAPRAVNHTELGLSTR-EGAYGA--LEDATMDLVEEDGAGISRQKKLY 1076
Query: 645 HWDKRGKKYIKLNNGE-RVSASGKVVKTESGAKVKATKTG-IYKKWKERSHKKVYLKGA- 701
HWD R K+Y+ + + E + GK +K E+G +V A + G YKKW ++HK + G+
Sbjct: 1077 HWDARKKRYVHIRSDEIDLKRGGKRIKNEAGQRVSAVEAGATYKKWVAKTHKSITATGSM 1136
Query: 702 SNEGNAEETTSVP 714
+E A + P
Sbjct: 1137 EDESTASQQVGTP 1149
>gi|340723049|ref|XP_003399911.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase
DDX54-like [Bombus terrestris]
Length = 772
Score = 553 bits (1426), Expect = e-155, Method: Compositional matrix adjust.
Identities = 323/748 (43%), Positives = 456/748 (60%), Gaps = 82/748 (10%)
Query: 15 KQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKT 74
K+K KSGGF+S+ LS + + I R+GYK+PTPIQRKT+PL L G DVVAMARTGSGKT
Sbjct: 28 KKKVCKKSGGFQSMALSFPLLKGILRRGYKIPTPIQRKTIPLALEGRDVVAMARTGSGKT 87
Query: 75 AAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSME 134
A FL+P+ ++L + G RALILSPTR+LALQTLKF KELG++TDL+ ++++GGDSME
Sbjct: 88 ACFLIPLFEKLKTRRAKAGARALILSPTRELALQTLKFIKELGKFTDLKAAVILGGDSME 147
Query: 135 SQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILG 194
+QF + NPDI++ATPGR +H E+ D+ L ++EYVVFDEAD LF MGF EQ+ +I
Sbjct: 148 NQFSAIHGNPDILVATPGRFLHICIEM-DLQLNNIEYVVFDEADRLFEMGFGEQITEITN 206
Query: 195 QLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAA 254
+L E+RQTLLFSATLP L +FAKAGL DP L+RLDV++KI L L+F R EEK A
Sbjct: 207 RLPESRQTLLFSATLPKLLVDFAKAGLTDPVLLRLDVESKIPEQLTLSFIVCRPEEKLAV 266
Query: 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRA 314
LL +++ I SD QT+IF +T+HHVE+++ + + G+ + Y ++D ARKI+ ++F
Sbjct: 267 LLCLLKNVIKSDSQTVIFAATQHHVEYIHQILEKAGISNTYIYSNLDPSARKINAAKFHT 326
Query: 315 RKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
K LIVTDVAARG+DIP LDNVIN++FP K K+FVHRVGR ARAGR GTA++ ++ ++
Sbjct: 327 SKVRVLIVTDVAARGLDIPQLDNVINFNFPAKSKLFVHRVGRCARAGRVGTAYNIISPDE 386
Query: 375 MAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDR 434
AYLLDLHLFL +P+ PS +I N + I G+ PQ +I+ +
Sbjct: 387 YAYLLDLHLFLGRPLNIVPSS---------------GSIENTDGIVGKMPQAMIE---EE 428
Query: 435 VREIID---SSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLP--REGLHPMFKNV 489
+ E+I+ S DL S+++ C NA++ Y +++PLPS ESI+R K+L G+ P + +V
Sbjct: 429 LAELINWHSCSTDLTSMEKVCDNAYKQYIRSRPLPSSESIKRVKELHIGEAGVIPEYSDV 488
Query: 490 LEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVH-EKII 548
L ++ +RP+ TI E +A SS VMKKKR +H E II
Sbjct: 489 ----SLSTTNLLSKIVNYRPQGTIFEIGAKA---------SSIDYQVMKKKRTLHKENII 535
Query: 549 NL------VHQQRSSKSMEKEVEPEADSLMAKEIKETHGS----------------KRKA 586
N V ++S++ + K+V + EI E + K K
Sbjct: 536 NFHRKADKVEVKKSTEDLPKKVYLPPST--TDEINEAFNTVVLPKKRNLDDLYKPKKXKR 593
Query: 587 KTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHW 646
+DE +FI + H E GL+V S F + +DL AD+ + Q Q+ W
Sbjct: 594 SIIRDENFFIPYNAPDKHTEEGLAVNS---FN-TEADKVQMDLTADNEESQRFQAQIKKW 649
Query: 647 DKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEG 705
D++ KK + +NN +V+ ++TESG + A+ K+ Y WKE+S KV A+N+
Sbjct: 650 DRKKKKMVTVNNERKVNK----IRTESGVWIPASYKSNRYTSWKEKS--KV---DATNDD 700
Query: 706 NAEETTS------VPGGRHLGGNNRKFR 727
++EE S H +N+K +
Sbjct: 701 DSEEEPSQMQKLQTTANTHWARHNQKLK 728
>gi|449477372|ref|XP_004176637.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase
DDX54-like [Taeniopygia guttata]
Length = 849
Score = 553 bits (1426), Expect = e-154, Method: Compositional matrix adjust.
Identities = 334/793 (42%), Positives = 475/793 (59%), Gaps = 86/793 (10%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
R + +KK KSGGF+S+ LS VF+ I +KGYKVPTPIQRKT+P IL G DVVAMARTGSG
Sbjct: 52 RAQNQKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPAILRGRDVVAMARTGSG 111
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTA FL+PM +RL + Q G RALILSPTR+LALQTLKFTKELG++T L+ +L++GGD
Sbjct: 112 KTACFLIPMFERL-KAPSQAGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDK 170
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
ME QF L +NPD+ + T GRL+H E++ L +VEYVVFDEAD LF MGFAEQL +I
Sbjct: 171 MEDQFAALHENPDMXVGTTGRLVHVAVEMK-QKLHTVEYVVFDEADRLFEMGFAEQLQEI 229
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
+ +L + QT+LFSATLP L EFA+AGL +P L+RLDV++K+S LKL FF +R ++K
Sbjct: 230 IARLPDCHQTVLFSATLPKLLVEFARAGLTEPMLIRLDVESKLSEQLKLVFFHVRGDDKP 289
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
A LL+++R + QT++FV+TKHH E+L L +G+ + Y +DQ ARKI++++F
Sbjct: 290 AVLLHLLRSVVKPQDQTVVFVATKHHTEYLRELLTAQGIRCTHIYSSLDQTARKINIAKF 349
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
K L+VTDVAARG+DIP+LDNVIN+ FP K K+F+HRVGR ARAGR+GTA+S V
Sbjct: 350 SQGKCPVLLVTDVAARGLDIPMLDNVINFSFPAKGKLFLHRVGRVARAGRSGTAYSLVAP 409
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVID--- 429
++M Y+ DLHLFL +P+ A ++E + +G A A G + GR PQ+++D
Sbjct: 410 DEMPYVFDLHLFLGRPLVLAGAQE--MPAGEGXHGVPWAADAGG--VMGRVPQSLVDDEE 465
Query: 430 --LVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDL--PREGLHPM 485
L++D S +L SL+R NA + Y +++P PS ESI+R KDL + G+HP+
Sbjct: 466 CLLLTDH-----QGSLELRSLRRVADNAHKQYLRSRPGPSPESIKRAKDLDVSQLGMHPL 520
Query: 486 FKNVLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKK----R 541
F+ E EL L + +K ++ K TI E + + P+S VM+ K R
Sbjct: 521 FRARFEDTELQRLKLVDSIKTYKSKATIFEINATS------RTPAS---TVMRSKRRHDR 571
Query: 542 AVHEKIINLVHQQRSS------------KSMEKEVEPEADSLMAKEIKETH----GSKRK 585
A+ EK ++R++ + + E E E ++ I++ G KRK
Sbjct: 572 ALIEKFQRGQQEKRAAALKGQGLCPAAPEPQDGEGEQEDLQVIGSSIQDVFSNVGGQKRK 631
Query: 586 --------------AKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVA 631
+ E+++I P + E GLSV + + AVLDL+
Sbjct: 632 RGRGGEDGPRKKPQQPAQQAEDFYIPYRPKDFESERGLSVGGEGSAFEQQAAGAVLDLMG 691
Query: 632 DDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKE 690
D++ L K KQ+ WD++ K+++ G+ K V+TESG + ++ K +Y+KWK+
Sbjct: 692 DENHNLNKNKQLLKWDRKKKRFV----GQTGQEDKKKVRTESGRYISSSYKNNLYEKWKQ 747
Query: 691 RSHKKVYLKGASNEGNAEETTSVPGGRHLGGNNRKFRG----GKNQQRSVPNAHVCSEIK 746
+ KV + EG P R +FRG G+ + V SE+K
Sbjct: 748 KY--KVDERDEDEEG--------PRSRE------QFRGKHRRGQGAAQPPAQGRVRSELK 791
Query: 747 DLDQVRKERQKKA 759
+ Q+ K+R+K A
Sbjct: 792 NKQQILKQRKKAA 804
>gi|440803241|gb|ELR24149.1| ATPdependent RNA helicase ddx54, putative [Acanthamoeba castellanii
str. Neff]
Length = 792
Score = 553 bits (1424), Expect = e-154, Method: Compositional matrix adjust.
Identities = 319/696 (45%), Positives = 426/696 (61%), Gaps = 63/696 (9%)
Query: 58 LSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117
+ G+DVVAMARTGSGKTAAF++PML +L +H Q G R LILSPTR+LALQTLKF KELG
Sbjct: 1 MGGSDVVAMARTGSGKTAAFVLPMLHKLQKHSFQFGARGLILSPTRELALQTLKFCKELG 60
Query: 118 RYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEA 177
+TDLR L+GGD+ME QF +L NPDI+IATPGRL+HHL EVE MSLKSV+YVVFDEA
Sbjct: 61 HFTDLRYCCLIGGDNMEDQFSQLTHNPDIMIATPGRLLHHLLEVE-MSLKSVQYVVFDEA 119
Query: 178 DCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISP 237
D LF MGFAEQL +I+G+L E RQTLLFSATLPS+L EFA+AGL P L+RLD D +S
Sbjct: 120 DRLFEMGFAEQLKEIMGRLGEGRQTLLFSATLPSSLVEFARAGLTQPSLIRLDTDITVSE 179
Query: 238 DLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCY 297
L+ FFT+R EEK A LL+M++ I D ++FV+T+HHVE+L L R + + Y
Sbjct: 180 HLRNVFFTVRAEEKAATLLWMMKAIIPQDLGAVVFVATRHHVEYLQELLRLGDISVTSVY 239
Query: 298 GDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRA 357
G MDQ ARK++++RFR + L+VTDVAARG+DIP LD VIN+DFP +PK+FVHRVGR
Sbjct: 240 GTMDQTARKLNLTRFRNGQARVLLVTDVAARGLDIPQLDYVINYDFPARPKLFVHRVGR- 298
Query: 358 ARAGRTGTAFSFVTSEDMAYLLDLHLFLS-KPIRAAPSEEEVLLDMDGVMSKIDQAIANG 416
R+GTA+S V+ +++AY+LD+HLF+ KP P EE
Sbjct: 299 ----RSGTAYSLVSPDELAYMLDVHLFMGWKPKHVVPEGEE---------------YHES 339
Query: 417 ETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKD 476
E YGR P I S+ V +++ +DL +L + NA++ Y +T+ PS ES++R K
Sbjct: 340 EVYYGRLPTDTISFYSEFVLNSLNNHSDLQALYKVTLNAYKQYHRTRTAPSPESVKRAKQ 399
Query: 477 LPREGLHPMFK--NVLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKH-----LQGP 529
LP +GLHP V+ ++ A+ F LK FRP QT+LE + SK L G
Sbjct: 400 LPSDGLHPCLARFGVVAKEQVEAIDFISSLKKFRPPQTVLEMQHGDVGSKRRGAAALTGQ 459
Query: 530 SSQWVDVMKKKRAVHEKIINLV---HQQRSSKSMEKEVEPEADS-LMAKE---------I 576
+ +DVMK KR H+++I QQ ++ M+ E + EA S +AKE +
Sbjct: 460 GA--LDVMKHKREQHDELIKRRIDGQQQELTEKMQTEADDEALSQAIAKEDEDENENDAV 517
Query: 577 KET--------HGS----KRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEA 624
ET H S KR+ +TF+DEEYFI E LSVR D GL +
Sbjct: 518 VETSKRSSAAEHNSVKKRKREPETFRDEEYFIPMFQQGRAKEDALSVRDDSR-GL--MGD 574
Query: 625 AVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGE-RVSASGKVVKTESGAKVKAT-KT 682
+DL++DD + K K WD++ K+++ + E + G K ESG V T K
Sbjct: 575 VAMDLMSDDKQTMMKNKNAMRWDRKRKRFVTAASLEAKEKKGGFKFKNESGTNVDGTKKI 634
Query: 683 GIYKKWKERSHKKVYLKGASNEGNAEETTSVPGGRH 718
IYKKW E++ + ++ ++ V GG++
Sbjct: 635 SIYKKWTEKT--RAHIPSVGDDETTVRAVPVEGGKY 668
>gi|412993031|emb|CCO16564.1| predicted protein [Bathycoccus prasinos]
Length = 910
Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust.
Identities = 283/562 (50%), Positives = 385/562 (68%), Gaps = 28/562 (4%)
Query: 10 LKRREKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMART 69
LK+ + KKK KSGGFES++L P++FRAIKRKGY++PTPIQRK +P+I +G DVVAMART
Sbjct: 56 LKQEKLNKKKQKSGGFESMDLPPDIFRAIKRKGYRLPTPIQRKAIPVISTGVDVVAMART 115
Query: 70 GSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVG 129
GSGKTAAF+VP+L L +H + G RALIL+PTR+LALQT T+++ ++TDLR+ LVG
Sbjct: 116 GSGKTAAFVVPVLAALQKHSLRNGARALILAPTRELALQTFAVTRDMAKFTDLRLCALVG 175
Query: 130 GDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQL 189
GDSME QFE+LA NPD+I+ATPGR++HH +E+E SL+ VE VV DEAD L MGF EQL
Sbjct: 176 GDSMEMQFEDLANNPDVIVATPGRVLHHTNEIESFSLRLVEKVVLDEADRLLEMGFQEQL 235
Query: 190 HKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQE 249
+I+ ++S++RQTLLFSATLPSALAEF K GLR+P ++RLD + KIS DL+L F +R+E
Sbjct: 236 SEIMKKVSQSRQTLLFSATLPSALAEFVKVGLREPRVIRLDSEMKISEDLRLTFALVRKE 295
Query: 250 EKHAALLYMIREHISSDQ-QTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIH 308
EK AALL +++ + +++ QT++F ST+HHVE L L ++EG +G MD ARKI
Sbjct: 296 EKIAALLRILQTVVENEKSQTVVFASTRHHVEHLETLLKKEGHSCVSIFGAMDFAARKIA 355
Query: 309 VSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFS 368
++ F++ K ++VTDVAARGID+PLLDNVIN+DFP K+FVHRVGR ARAGR G A S
Sbjct: 356 LATFKSGKANVMVVTDVAARGIDVPLLDNVINYDFPANAKLFVHRVGRVARAGRKGIAHS 415
Query: 369 FVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVI 428
+ E++ Y++DLHLFL + I+ P++ + + + + AN E++ G FP +
Sbjct: 416 ILVKEELGYVVDLHLFLGRKIK--PADIVPPQNEEEAEKRAREGDANEESVVGTFPIGSL 473
Query: 429 DLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMF-- 486
DL++DRVRE+ ++ +L +LQ+T NA++ Y KT+ S ES+ R K L G HP+F
Sbjct: 474 DLLADRVRELHETHIELEALQKTTVNAYKAYQKTRIPASSESVARAKPLIECGPHPLFCA 533
Query: 487 ------------------KNVLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQG 528
KN E ELM +K +RP T+LEAE +A
Sbjct: 534 AIFRKASNAGGTANTTTYKNAKELAELM-----RGMKNYRPHATVLEAEFASAGKIGKNW 588
Query: 529 PSSQWVDVMKKKRAVHEKIINL 550
SS V+ M +KR H K I +
Sbjct: 589 KSSVSVNAMSEKRKAHAKFIEM 610
Score = 76.6 bits (187), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 95/179 (53%), Gaps = 13/179 (7%)
Query: 589 FKDEEYFISSVPTN-HHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQ-VYHW 646
F+D+E+F+ VP +H E GLS + +G ++ L+ +D+VA+D ++KQK+ V W
Sbjct: 702 FRDDEFFMDVVPRKINHKELGLSTK--EGCTMDDLDEMTMDIVAEDGASMRKQKKLVSVW 759
Query: 647 DKRGKKYIKLNNGERVSASGKVVKTESGAKVKATKTG-IYKKWKERSHKKVYLKG--ASN 703
DK+ K Y++++ E + +GK +K ESG V G YKKW+ ++++ V G
Sbjct: 760 DKKKKNYVQVDANE-IGKNGKRIKNESGKVVSKDTLGKTYKKWQSKTNRYVSQVGEVEDE 818
Query: 704 EGNAEETTSVPGGRHLGGNNRKFR-----GGKNQQRSVPNAHVCSEIKDLDQVRKERQK 757
+ A G GG +F+ G + + + SE+++ DQ+RK R++
Sbjct: 819 KTRARYDKKKRAGASEGGGMSRFKRHFHTKGTDGGGNGSGNNAPSELRNADQIRKGRKE 877
>gi|350423736|ref|XP_003493575.1| PREDICTED: ATP-dependent RNA helicase DDX54-like [Bombus impatiens]
Length = 772
Score = 549 bits (1415), Expect = e-153, Method: Compositional matrix adjust.
Identities = 319/748 (42%), Positives = 455/748 (60%), Gaps = 82/748 (10%)
Query: 15 KQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKT 74
K+K KSGGF+S+ LS + + I R+GYK+PTPIQRKT+PL L G D+VAMARTGSGKT
Sbjct: 28 KKKVCKKSGGFQSMALSFPLLKGILRRGYKIPTPIQRKTIPLALEGRDIVAMARTGSGKT 87
Query: 75 AAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSME 134
A FL+P+ ++L + G RALILSPTR+LALQTLKF KELG++TDL+ ++++GGDSME
Sbjct: 88 ACFLIPLFEKLKTRQAKAGARALILSPTRELALQTLKFIKELGKFTDLKAAVILGGDSME 147
Query: 135 SQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILG 194
+QF + NPDI++ATPGR +H E+ D+ L ++EYVVFDEAD LF MGF EQ+ +I
Sbjct: 148 NQFSAIHGNPDILVATPGRFLHICIEM-DLQLNNIEYVVFDEADRLFEMGFGEQITEITN 206
Query: 195 QLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAA 254
+L E+RQTLLFSATLP L +FAKAGL DP L+RLDV++KI L L+F R EEK A
Sbjct: 207 RLPESRQTLLFSATLPKLLVDFAKAGLTDPVLLRLDVESKIPEQLTLSFIVCRSEEKLAV 266
Query: 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRA 314
LL +++ I SD QT+IF +T+HHVE+++ + + G+ + Y ++D ARKI+ ++F
Sbjct: 267 LLCLLKNIIKSDSQTVIFAATQHHVEYIHQILEKAGISNTYIYSNLDPSARKINAAKFHT 326
Query: 315 RKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
K LIVTDVAARG+DIP LDNVIN++FP K K+FVHRVGR ARAGR GTA++ ++ ++
Sbjct: 327 SKVRVLIVTDVAARGLDIPQLDNVINFNFPAKSKLFVHRVGRCARAGRAGTAYNIISPDE 386
Query: 375 MAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDR 434
AYLLDLHLFL +P+ PS +I N + I G+ PQ +I+ +
Sbjct: 387 YAYLLDLHLFLGRPLSIVPSF---------------GSIENTDGIVGKMPQAMIE---EE 428
Query: 435 VREIID---SSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDL--PREGLHPMFKNV 489
+ E+I+ S DL S+++ C NA++ Y +++P PS ESI+R K+L G+ P + +V
Sbjct: 429 LAELINWHSCSTDLTSMEKVCDNAYKQYIRSRPAPSSESIKRVKELHISEAGVIPEYSDV 488
Query: 490 LEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVH-EKII 548
L ++ +RP+ TI E +A SS VMKKKR +H E II
Sbjct: 489 ----SLSTTNLLSKIVNYRPQGTIFEIGAKA---------SSIDYQVMKKKRTLHKENII 535
Query: 549 NL------VHQQRSSKSMEKEVEPEADSLMAKEIKETHGS----------------KRKA 586
N V ++ ++ + K+V + EI E + K+K
Sbjct: 536 NFHRKADKVEAKKITEDLPKKVYLPPST--TDEINEAFNTVVLPKKRNLDDLYKPKKKKR 593
Query: 587 KTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHW 646
+DE +FI + H E GL+V S F + +DL AD+ + Q Q+ W
Sbjct: 594 SVIRDENFFIPYNAPDKHTEEGLAVNS---FN-TEADKVQMDLTADNEESQRFQAQIKKW 649
Query: 647 DKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEG 705
D++ KK + +N+ +V+ ++TESG + A+ K+ Y WKE+S KV A+N+
Sbjct: 650 DRKKKKMVTVNSERKVNK----IRTESGVWIPASYKSNRYTSWKEKS--KV---DATNDD 700
Query: 706 NAEETTS------VPGGRHLGGNNRKFR 727
++EE S H +N+K +
Sbjct: 701 DSEEEPSQMQKLQTTANTHWARHNQKLK 728
>gi|281209095|gb|EFA83270.1| putative RNA helicase [Polysphondylium pallidum PN500]
Length = 1070
Score = 548 bits (1412), Expect = e-153, Method: Compositional matrix adjust.
Identities = 275/541 (50%), Positives = 383/541 (70%), Gaps = 26/541 (4%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+S+ L +F+AI RKG+KVPTPIQRKT+PLIL+G+DVVAMARTGSGKTAAF+VPM+Q+
Sbjct: 259 FQSMELHKTLFKAIVRKGFKVPTPIQRKTIPLILAGSDVVAMARTGSGKTAAFVVPMIQK 318
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L +H + G RA+ILSPTR+LA+QT K K+ ++LR L+VGGDSME QF ELA+NP
Sbjct: 319 LGEHSIKVGARAIILSPTRELAIQTYKVVKDFTYGSNLRSCLVVGGDSMEDQFAELARNP 378
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
DII+ATPGRL+HHL EV M L +V+Y+VFDEAD LF MGF +QL+ I+ +LS+NRQTLL
Sbjct: 379 DIIVATPGRLVHHLQEV-GMGLSTVQYIVFDEADRLFEMGFQQQLNDIVSKLSDNRQTLL 437
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSATLPS L +F +AGL +P LVRLD +TKIS +L L+F+T+R +EK A LLY+++E I
Sbjct: 438 FSATLPSMLVDFVRAGLTNPILVRLDSETKISENLALSFYTIRHDEKLAVLLYLLKEVIE 497
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
Q T+IF +TK+HVE+L + ++ ++ ++ +G +D ARKI++++FR+ +IVTD
Sbjct: 498 DKQPTIIFTATKYHVEYLQIFLKQAKIDSTIIHGYLDPVARKINLAKFRSNNVSVMIVTD 557
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
+AARGIDIPLLDNVIN+DFPPK KIFVHRVGR ARAGR GTA+S V+ +++ Y++DLHL+
Sbjct: 558 IAARGIDIPLLDNVINFDFPPKEKIFVHRVGRVARAGRKGTAYSLVSPDEIPYMIDLHLY 617
Query: 385 LSKPI--RAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSS 442
L++ I +A P++ E D +I ++YG PQ +ID ++ V+
Sbjct: 618 LARKIINKAEPAQLE------------DTSI----SLYGNIPQHIIDRENEFVKIQKAEC 661
Query: 443 ADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVLEGGELMALAFSE 502
+L SL T NA++ + +T+P S ES R K+L + +HP L+ E+ AF +
Sbjct: 662 VELASLNNTINNAYKKFVRTRPGASHESNNRAKELNKSYIHPSLLGRLDQSEMDRNAFVQ 721
Query: 503 RLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKSMEK 562
LKAFRP QT+ E E RSK S +M +KR +H ++I+ ++ +K +E+
Sbjct: 722 SLKAFRPPQTVFEL--EMKRSKE-----SSSAAIMYEKRKLHSEVIDRQAKRAEAKRIEE 774
Query: 563 E 563
E
Sbjct: 775 E 775
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 94/193 (48%), Gaps = 34/193 (17%)
Query: 583 KRKAKTF-KDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQK 641
KRK ++ +DE +FISS P+N++ E LSV S L+R + L+L DD + K
Sbjct: 872 KRKTRSSGRDESFFISSTPSNYYEEKALSVTSH----LSRDDE--LNLNPDDQKHAKNAK 925
Query: 642 QVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKATKT--GIYKKWKERSHKKVYLK 699
+ WDK+ K++ + E + +V+ E+G V +K+ +Y+ WK+++ ++
Sbjct: 926 SM-KWDKKKGKFVGVQRDEG-KKNKNLVRNEAGVLVDVSKSKKNVYEDWKKKTRSRIQHT 983
Query: 700 GASNEGNAEETT--SVPGGRHLGGNNRKFRGGKN----QQRSVPNAHVC-----SEIKD- 747
G + + SVP K+RG K QQ+ V SEIKD
Sbjct: 984 GEDENERLQPNSKQSVP---------MKWRGKKGAQEKQQKEKSGGWVGKKVARSEIKDK 1034
Query: 748 --LDQVRKERQKK 758
+ + R+E+++K
Sbjct: 1035 HVIQKQRQEKERK 1047
>gi|322787030|gb|EFZ13254.1| hypothetical protein SINV_10425 [Solenopsis invicta]
Length = 775
Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust.
Identities = 332/789 (42%), Positives = 468/789 (59%), Gaps = 79/789 (10%)
Query: 15 KQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKT 74
K+K KSGGF+S+ LS V + I ++GYK+PTPIQRKT+PL L G DVVAMARTGSGKT
Sbjct: 28 KKKICKKSGGFQSMALSFPVLKGILKRGYKIPTPIQRKTIPLALEGRDVVAMARTGSGKT 87
Query: 75 AAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSME 134
A FL+P+ ++L + G RALILSPTR+LALQTLKF KELGR+T + S+++GGDSM+
Sbjct: 88 ACFLIPLFEKLKARQAKAGARALILSPTRELALQTLKFIKELGRFTGFKASVILGGDSMD 147
Query: 135 SQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILG 194
QF + NPDII+ATPGR +H E+ D+ LK+VEYVVFDEAD LF MGF EQ+ +I+
Sbjct: 148 DQFNAIHGNPDIIVATPGRFLHICVEM-DLQLKNVEYVVFDEADRLFEMGFGEQIQEIVN 206
Query: 195 QLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAA 254
+L E+RQTLLFSATLP L +FAKAGL DP L+RLDV++K+ L L+F T R EEK A
Sbjct: 207 RLPESRQTLLFSATLPKILVDFAKAGLSDPVLLRLDVESKLPEGLSLSFITCRPEEKLAV 266
Query: 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRA 314
LL +++ I + QT+IFV T HHVE+++ + + G+ + Y ++D ARKI+ ++F+
Sbjct: 267 LLSLLKRIIKPESQTIIFVETMHHVEYIHQILDKAGISNTFIYSNLDPSARKINAAKFQM 326
Query: 315 RKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
K LIVTDVAARGIDIP LD VIN++FP K K+FVHRVGR ARAGR GTA++ V+S++
Sbjct: 327 GKVRVLIVTDVAARGIDIPHLDFVINFNFPAKSKLFVHRVGRCARAGRAGTAYNIVSSDE 386
Query: 375 MAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDR 434
YLLDLHLFL +P+ P+ + N E+ G+ PQ +I+ +
Sbjct: 387 YPYLLDLHLFLGRPLTIVPTT---------------GSTENMESAVGKLPQAMIE---EE 428
Query: 435 VREII---DSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDL--PREGLHPMFKNV 489
+ E+I ++S DL ++++ C NA++ Y K++P S ES++R K+L G+ P + +
Sbjct: 429 LAELINWHNTSTDLINMRKVCNNAYQQYVKSRPGASMESVKRIKELRINEAGVLPEYSD- 487
Query: 490 LEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVH-EKII 548
A R+K +RP+ TI E G S Q VMK KR H E I+
Sbjct: 488 ---DSHAAADIISRMKNYRPQGTIFEI-GTKTNSTDYQ--------VMKTKRMFHKENIL 535
Query: 549 NL---VHQQRSSK---SMEKEVEPEADSLMAKEIKETHG----------------SKRKA 586
N V ++++ K + E + S A+EI SK+K
Sbjct: 536 NFHKKVEERKTDKINTASESSKKINLPSSNAEEINAAFNTVVVPKKISSNDLYKISKKKC 595
Query: 587 KTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHW 646
T +DEEY+I + H E GL+V + F + A +DL AD+ G Q Q+ W
Sbjct: 596 TTKRDEEYYIPYSAPDKHTEDGLAVNT---FA-TEADKAQIDLTADNEEGRHLQMQLKKW 651
Query: 647 DKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEG 705
D++ KK + + ER K ++TESGA + AT KT Y WKE++ + S +
Sbjct: 652 DRKRKKMVTV---ER-DPKAKKIRTESGAWIPATYKTNRYNVWKEKNKID---ENDSEDD 704
Query: 706 NAEETTSVPGGRHLGGNNRKFRGGKNQQRSVPNAHVCSEIKDLDQVRKER---QKKADRI 762
+ EE++ + R + ++ Q+ V +E+K +Q+ K R ++K R
Sbjct: 705 STEESSQMKNLRTTANTH----WARHNQKLKDKIKVKNELKRPEQILKARKLLERKRQRN 760
Query: 763 AFMKGKTQK 771
K K QK
Sbjct: 761 GRRKNKGQK 769
>gi|391345925|ref|XP_003747233.1| PREDICTED: ATP-dependent RNA helicase DDX54-like [Metaseiulus
occidentalis]
Length = 805
Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust.
Identities = 324/796 (40%), Positives = 489/796 (61%), Gaps = 76/796 (9%)
Query: 19 KSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78
K ++GGF+SL L+P++ + I++KGY+ PTPIQRK +P IL DVVAMARTGSGKTAAFL
Sbjct: 53 KKRTGGFQSLGLNPSLLKGIQKKGYRQPTPIQRKAIPPILERRDVVAMARTGSGKTAAFL 112
Query: 79 VPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138
+PM + L H P G RALI+SPTR+LA+QT KF KELG++TDLR +++GGDS++ QF
Sbjct: 113 LPMFEILKTHSPVTGGRALIISPTRELAIQTHKFCKELGKFTDLRSVVILGGDSLDDQFA 172
Query: 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198
+ +NPDIII TPGRL+H + E+ +++L+ +E VVFDEAD LF MG EQ+ +IL +L +
Sbjct: 173 AMHENPDIIIGTPGRLLHLVMEM-NLNLRMIEIVVFDEADRLFEMGLQEQMTEILNRLRD 231
Query: 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258
RQT+LFSATLP L +F +AGL+DP L+RLDVD+++ L+ ++ +R+E+K+A LL++
Sbjct: 232 TRQTVLFSATLPRLLIDFVQAGLKDPLLIRLDVDSRLPDTLRTVYWVMREEDKYAVLLHL 291
Query: 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
++E D T++FV TKHHVE++ + + G+ Y +DQ AR + V+ F+++
Sbjct: 292 LKELEVGDNLTVVFVPTKHHVEYIREILEKIGISCGCVYSSLDQVARTVAVNAFKSKSLK 351
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
L+VTDVAARGIDIPLLDNV+N+ FP KPK+FVHRVGR ARAGR GTA+SFV++++ +YL
Sbjct: 352 ILLVTDVAARGIDIPLLDNVVNFSFPAKPKLFVHRVGRVARAGRFGTAYSFVSADEASYL 411
Query: 379 LDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREI 438
LDLHLFL + + E + D D ++ G PQ++ID + ++
Sbjct: 412 LDLHLFLDRKLTFP--EPNMAQDEDRIL--------------GSVPQSIIDEERANLDKL 455
Query: 439 IDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGL--HPMF-KNVLE-GGE 494
S D+++LQ+ C NA Y K +P S ES RR K L + + HPMF K+ + E
Sbjct: 456 HSLSVDISNLQKVCANAMIQYRKARPNSSAESNRRMKALLKGSVPTHPMFAKDSTDVARE 515
Query: 495 LMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQ 554
M AF K F+P TI E G + S+ VM+ KR H+ +I
Sbjct: 516 DMLSAF----KKFKPNATIFEI-GNTGK--------SEASAVMRNKRRAHDDLIERSASN 562
Query: 555 RSSKSMEKEVEPE--------ADSLMAKEIKETHGSK-------RKAKTFKDEEYFISSV 599
S+ + + PE AD K++ T K R+ K+FKD +++IS +
Sbjct: 563 DRSEPILAKQSPEDKKSTLEDADEDAIKKVFATASWKVSKKKRAREMKSFKDTQFYISPL 622
Query: 600 PTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNG 659
P +HH E GL+V ++ F ++ VLDL+ +D+ ++K+ WD++ K++++ ++G
Sbjct: 623 PADHHFENGLNV--EKNFS-REAQSEVLDLMGEDTDDIRKKNNRMKWDRKKKRFVREDDG 679
Query: 660 ERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNAEETTSVPGG-- 716
+ K+++TESGA V A+ K +YK+WK +++ + LK ++E AEE
Sbjct: 680 N--NPKSKMIRTESGALVPASYKKDLYKQWKRKNN--IDLKD-NHEDEAEEGDMFGKQNL 734
Query: 717 --RHLGGNNR---KFRGGKNQQRSVPNAHVCSEIKDLDQVRKERQKKADRIAFMKGKTQK 771
R LG N R K R + +++ + SE+K + + KE ++K +TQ
Sbjct: 735 YRRELGVNQRFQPKLRRVQIDEKT--GKRIKSELKRPEVILKEYKRKK--------RTQH 784
Query: 772 GKKFS-KNGKRGKPRK 786
+K + KN ++G+ R+
Sbjct: 785 QQKMAKKNREQGRTRR 800
>gi|410976686|ref|XP_003994747.1| PREDICTED: ATP-dependent RNA helicase DDX54 [Felis catus]
Length = 866
Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust.
Identities = 331/792 (41%), Positives = 473/792 (59%), Gaps = 67/792 (8%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
R + KKK KSGGF+S+ LS VF+ I +KGYKVPTPIQRKT+P+IL G DVVAMARTGSG
Sbjct: 66 RAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPMILDGKDVVAMARTGSG 125
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTA FL+PM +RL Q G RALILSPTR+LALQT+KFTKELG++T LR +L++GGD
Sbjct: 126 KTACFLIPMFERLKTRSAQTGARALILSPTRELALQTMKFTKELGKFTGLRTALILGGDK 185
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
+E QF L +NPD+IIATPGRL+H E+ ++ L+SVEYVVFDEAD LF MGFAEQL +I
Sbjct: 186 IEDQFAALHENPDVIIATPGRLVHVAVEM-NLKLQSVEYVVFDEADRLFEMGFAEQLQEI 244
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
L +L QT+LFSATLP L EFA+AGL +P L+RLDVD K++ LK +FF +R++ K
Sbjct: 245 LCRLPGGHQTVLFSATLPRLLVEFARAGLTEPVLIRLDVDAKLNEQLKTSFFLVREDTKA 304
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
A LL+++R + QT++FV+TKHH E+L+ L +G+ + Y +DQ ARKI++++F
Sbjct: 305 AVLLHLLRTVMRPQDQTVVFVATKHHAEYLSELLTTQGVSCAHIYSALDQTARKINLAKF 364
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
K LIVTD+AARG+DIPLLDNVIN+ FP K K+F+HRVGR ARAGR+GTA+S V
Sbjct: 365 THGKCSTLIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAP 424
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTV----- 427
+++ YLLDLHLFL + + A E S + + + +T+
Sbjct: 425 DEVPYLLDLHLFLGRALTLARPHEGP--------SAFTPHFSCVPSCWRYMFETLHLTEF 476
Query: 428 IDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK--DLPREGLHPM 485
+ +R + +S +L L R NA + Y +++P PS ESI+R K D+ GLHP+
Sbjct: 477 LGQSQGGLRSALSASLELRGLGRVADNAQQQYVRSRPAPSPESIKRAKELDVAGLGLHPL 536
Query: 486 FKNVLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHE 545
F + E EL L + +K +R + TI E A S+ L SSQ VM+ KR
Sbjct: 537 FSSRFEEEELQRLRMVDTIKRYRSRATIFEIN---ASSRDL---SSQ---VMRAKRQKDR 587
Query: 546 KIINLVHQQRSSK----------------------------SMEKEVEPEADSLMAKEIK 577
K I Q R + S+E +V E ++
Sbjct: 588 KAIATFRQGRQGQQEGPAGPGPGCPAPREERPEEEEEAAGESLE-DVFTEVIGRKRQQPG 646
Query: 578 ETHGSKRKAKT--FKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSG 635
G+KR+ + +D E++I P + E GLS+ G ++ AVLDL+ D++
Sbjct: 647 PERGAKRRREEARHRDREFYIHYRPKDFDSERGLSISGAAGAFEQQVAGAVLDLMGDEAQ 706
Query: 636 GLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHK 694
L + +Q WD++ K+++ G+ K +KTESG + ++ K +Y+KWK++ +
Sbjct: 707 NLTRGRQQLKWDRKKKRFV----GQSGQEDKKKIKTESGHYISSSYKRDLYRKWKQK--Q 760
Query: 695 KVYLKGASNEGNAEETTSVPGGRHLGGNNRKFRGGKNQQRSVPNAHVCSEIKDLDQVRKE 754
KV + + +EG +++ R G R + + + P V SE+K Q+ K
Sbjct: 761 KVDDRDSEDEGASQQRGPE---RRGGRRGRGQGASQPRTPAGPAGRVRSELKTKQQILK- 816
Query: 755 RQKKADRIAFMK 766
R+++A ++ F++
Sbjct: 817 RRRRAQKLRFLQ 828
>gi|431914219|gb|ELK15477.1| ATP-dependent RNA helicase DDX54 [Pteropus alecto]
Length = 942
Score = 547 bits (1409), Expect = e-152, Method: Compositional matrix adjust.
Identities = 343/868 (39%), Positives = 485/868 (55%), Gaps = 135/868 (15%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
R + KKK KSGGF+S+ LS VFR + +KGYKVPTPIQRKT+P+IL G DVVAMARTGSG
Sbjct: 86 RAQNKKKKKSGGFQSMGLSYPVFRGVMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSG 145
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTA FL+PM +RL Q G RALILSPTR+LALQT+KFTKELG++T L+ +L++GGD
Sbjct: 146 KTACFLIPMFERLKARSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDK 205
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
ME QF L +NPDIIIATPGRLMH E+ ++ L+SVEYVVFDEAD LF MGFAEQL +I
Sbjct: 206 MEDQFSALHENPDIIIATPGRLMHVAVEM-NLKLQSVEYVVFDEADRLFEMGFAEQLQEI 264
Query: 193 L--------------------------GQLSE----------------NRQTLLFSATLP 210
+ G+L E +QT+LFSATLP
Sbjct: 265 ISRLPGGQQTVLFSATLPKMLVEFARAGELFEMGFAEQLQEIISRLPGGQQTVLFSATLP 324
Query: 211 SALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTL 270
L EFA+AGL +P L+RLDVD K++ LK AFF R++ K A LLY++R + QT+
Sbjct: 325 KMLVEFARAGLTEPVLIRLDVDAKLNEQLKTAFFLAREDTKAAVLLYLLRNVVRPQDQTV 384
Query: 271 IFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGI 330
+FV+TKHH E+L+ L + + + Y +DQ ARKI++++F K LIVTD+AARG+
Sbjct: 385 VFVATKHHAEYLSELLTAQRVSCAHIYSALDQTARKINLAKFTHGKCSALIVTDLAARGL 444
Query: 331 DIPLLDNVINWDFPPKPKIFVHR------------------------VGRAARAGRTGTA 366
DIPLLDNVIN+ FP K K+F+HR VGR ARAGR+GTA
Sbjct: 445 DIPLLDNVINYSFPAKGKLFLHRVEPCVGSCTLVQVTLVAVSAPSPFVGRVARAGRSGTA 504
Query: 367 FSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQT 426
+S V +++ YLLDLHLFL + + A +E L G+ + GR PQ+
Sbjct: 505 YSLVAPDEVPYLLDLHLFLGRALTLACPNKEPL------------GAVGGDGVLGRVPQS 552
Query: 427 VIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK--DLPREGLHP 484
V+D +R +++S +L L R NA + Y +++P PS ESI R K DL GLHP
Sbjct: 553 VVDDEDCGLRSTLEASLELRGLARVADNAQQQYVRSRPAPSPESIARAKELDLAGLGLHP 612
Query: 485 MFKNVLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVH 544
+F + LE EL L + ++ +R + TI E A S+ L SSQ VM+ KR
Sbjct: 613 LFSSRLEEKELQRLRLVDGIRNYRSRATIFEIN---ASSRDL---SSQ---VMRAKRQRD 663
Query: 545 EKIINLVHQQRSSKS-----------MEKEVEPEADSLMAKEIKET-------------- 579
K I Q R + +E + E + +++++
Sbjct: 664 RKAIASFQQGRQGRQEGPAGPARGLPAPQEEQREKEQAAGEDVEDVFAKVVGRKRRQPGP 723
Query: 580 -HGSKRKAKTFK--DEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGG 636
G+KR+ + + D + ++ P + E GLS+ D G ++ AVLDL+ D++
Sbjct: 724 DQGAKRRREGPRQQDRDCYVPYRPKDFDSERGLSIGGDGGAFEQQVAGAVLDLMGDETQN 783
Query: 637 LQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKK 695
L + +Q WD++ K+++ G+ K +KTESG + ++ K +Y+KWK++ +K
Sbjct: 784 LTRGRQQLKWDRKKKRFV----GQSGQEDKKKIKTESGRYISSSYKQDLYQKWKKK--QK 837
Query: 696 VYLKGASNEGNAEETTSVPGGRHLGGNNRKFRGGKNQQRSVPNAHVCSEIKDLDQVRKER 755
+ + + EG++ G R + + P V SE+K Q+ K+R
Sbjct: 838 IDDRDSEEEGSSHRRGPE---GRGGKRGRGQGASRPRTPGAPAGRVRSELKTKQQILKQR 894
Query: 756 QKKADRIAFMKGKTQKG--KKFSKNGKR 781
+ A ++ F+ Q+G K+ S G+R
Sbjct: 895 -RHAQKMRFL----QRGGLKQLSARGRR 917
>gi|355564704|gb|EHH21204.1| hypothetical protein EGK_04216 [Macaca mulatta]
Length = 790
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 315/705 (44%), Positives = 433/705 (61%), Gaps = 63/705 (8%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
R + KKK KSGGF+S+ LS VF+ I +KGYKVPTPIQRKT+P+IL G DVVAMARTGSG
Sbjct: 86 RAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSG 145
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTA FL+PM +RL H Q G RALILSPTR+LALQTLKFTKELG++T L+ +L++GGD
Sbjct: 146 KTACFLLPMFERLKTHSAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDR 205
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
ME QF L +NPDIIIATPGRL+H E+ ++ L+SVEYVVFDEAD LF MGFAEQL +I
Sbjct: 206 MEDQFAALHENPDIIIATPGRLVHVAVEM-NLKLQSVEYVVFDEADRLFEMGFAEQLQEI 264
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
+ +L QT+LFSATLP L EFA+AGL +P L+RLDVDTK++ LK +FF +R++ K
Sbjct: 265 IARLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDTKLNEQLKTSFFLVREDTKA 324
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
A LL+++R + QT++FV+TKHH E+L L + + + Y +D ARKI++++F
Sbjct: 325 AVLLHLLRNVVRPQDQTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKF 384
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
K LIVTD+AARG+DIPLLDNVIN+ FP K K+F+HRVGR ARAGR+GTA+S V
Sbjct: 385 TLGKCSALIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAP 444
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVS 432
+++ YLLDLHLFL + + A L D G A + + GR PQ+V+D
Sbjct: 445 DEIPYLLDLHLFLGRSLALA----RPLEDPSGA--------AGVDGMLGRVPQSVVDEED 492
Query: 433 DRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK--DLPREGLHPMFKNVL 490
++ +++S +L L R NA + Y +++P PS ESI+R K DL GLHP+F +
Sbjct: 493 SGLQSTLEASLELRGLARVADNAQQQYVRSRPAPSPESIKRAKELDLVGLGLHPLFSSRF 552
Query: 491 EGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAV-HEKIIN 549
E EL L + +K +R + TI E A S+ L SQ VM+ KR H+ I
Sbjct: 553 EEEELQRLRLVDSIKNYRSRATIFEIN---ASSRDL---CSQ---VMRAKRQKDHKAIAR 603
Query: 550 LVHQQRSSKSMEKEVEPEADSLMAKEI----------------------------KETHG 581
Q+ + ++ A S A + ++ G
Sbjct: 604 FQQGQQGRQEQQEGPVGPAPSCPALQEKQPEKEEEEEEEARESVEDIFSEVMGRKRQRSG 663
Query: 582 SKRKAKTF------KDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSG 635
R AK +D+E++I P + E GLS+ + G ++ AVLDL+ D++
Sbjct: 664 PNRGAKRRREEAWERDQEFYIPYRPKDFDSERGLSISGEGGAFEQQVAGAVLDLMGDEAQ 723
Query: 636 GLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT 680
L + +Q WD++ K+++ G+ K +KTESG + ++
Sbjct: 724 NLTRGRQQLKWDRKKKRFV----GKSGQEDKKKIKTESGRYINSS 764
>gi|307175593|gb|EFN65503.1| ATP-dependent RNA helicase DDX54 [Camponotus floridanus]
Length = 751
Score = 543 bits (1399), Expect = e-151, Method: Compositional matrix adjust.
Identities = 323/769 (42%), Positives = 462/769 (60%), Gaps = 88/769 (11%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
KSGGF+S+ LS + + I ++GYK+PTPIQRKT+PL L G D+VAMARTGSGKTA FL+P
Sbjct: 6 KSGGFQSMALSFPILKGILKRGYKIPTPIQRKTIPLALEGRDIVAMARTGSGKTACFLIP 65
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
+ ++L + G RALILSPTR+LALQTLKF KELGR+T L+ +++GGDSM++QF +
Sbjct: 66 LFEKLKTRQTKTGARALILSPTRELALQTLKFIKELGRFTGLKAVVILGGDSMDNQFSII 125
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
+NPDII+ATPGR +H E+ D+ LK+VEYVVFDEAD LF MGF EQ+ +I+ +L E R
Sbjct: 126 HENPDIIVATPGRFVHICIEM-DLKLKNVEYVVFDEADRLFEMGFGEQIQEIVNRLPETR 184
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSATLP L +FAKAGL DP L+RLDV++K+ L L+F T R EEK A LL +++
Sbjct: 185 QTLLFSATLPKILVDFAKAGLNDPVLLRLDVESKLPEGLMLSFITCRPEEKLAVLLCLLK 244
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
I D QT+IF T HHVE+++ + + + + Y ++D ARKI+ ++F+ K L
Sbjct: 245 RIIKPDSQTIIFAETMHHVEYIHQILDKANISNTFIYSNLDPCARKINAAKFQTGKVKVL 304
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLD 380
IVTDVAARGIDIP LD VIN++FP K K+FVHRVGR ARAGR GTA++ V+S++ YLLD
Sbjct: 305 IVTDVAARGIDIPYLDYVINFNFPAKSKLFVHRVGRCARAGRVGTAYNIVSSDEYPYLLD 364
Query: 381 LHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREII- 439
LHLFL +P+ PS +I N E+ G+ PQ++I+ + + E+I
Sbjct: 365 LHLFLGRPLTIMPST---------------GSIENVESAVGKMPQSMIE---EELGELIN 406
Query: 440 --DSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLP--REGLHPMFKNVLEGGEL 495
+SS DL ++QR C NA++ Y +++P S ES++R K+L G+ P + +V
Sbjct: 407 WHNSSTDLTNMQRVCNNAYQRYVRSRPGASTESVKRIKELCINEAGILPQYSDV----SP 462
Query: 496 MALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQ- 554
A ++K++RPK TI E G A S Q VMK KR H++ I H++
Sbjct: 463 TAADIISKMKSYRPKGTIFEI-GTKANSVDYQ--------VMKTKRIFHKENIFNFHKKI 513
Query: 555 ---------RSSKSMEKEVEPEADSLMAKEIKETHGS-----------------KRKAKT 588
+SK++ K++ + S A+EI + K+K T
Sbjct: 514 EDRKTEEVNMTSKNLPKKINLPSSS--AEEINAAFSTVIVPKKRSGDDLYKISKKKKTHT 571
Query: 589 FKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDK 648
+DEEY+I + H E GL+V + F + A +DL+AD+ QKQ+ WD+
Sbjct: 572 KRDEEYYIPYSAPDKHTEEGLAVNT---FA-TEADKAQMDLMADNEDSQHLQKQLKKWDR 627
Query: 649 RGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNA 707
+ KK + ++ + K ++TESG + AT KT Y WKE+S + NE ++
Sbjct: 628 KKKKMVTIDRDPK----AKKIRTESGVWIPATYKTNRYNMWKEKSK----VDENDNESDS 679
Query: 708 EETTSVPGGRHLGGNNRKFRGGKNQQRSVPNAHVCSEIKDLDQVRKERQ 756
EE + +K R N + N + ++K ++++K Q
Sbjct: 680 EEESL---------QTQKLRTTANTHWARHNQKLKDKVKTKNELKKPEQ 719
>gi|303277179|ref|XP_003057883.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460540|gb|EEH57834.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 532
Score = 543 bits (1399), Expect = e-151, Method: Compositional matrix adjust.
Identities = 253/455 (55%), Positives = 345/455 (75%), Gaps = 2/455 (0%)
Query: 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPML 82
GGFE+++L P+VFRAIKRKGY++PTPIQRK +P+ LSGADVVAMARTGSGKTAAFL+P+L
Sbjct: 80 GGFEAMDLLPDVFRAIKRKGYRIPTPIQRKAIPVALSGADVVAMARTGSGKTAAFLIPVL 139
Query: 83 QRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
+L H + G RA++LSPTR+LALQT KF +EL ++TDLR +VGGDSME+QFE+LA
Sbjct: 140 HKLRAHSLKAGARAIVLSPTRELALQTFKFAQELSKFTDLRCVCIVGGDSMEAQFEDLAT 199
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
NPD+ +ATPGRL+HH+ E++ ++++SV++VV DEAD L MGF++QL I+ Q+S+ RQT
Sbjct: 200 NPDLYVATPGRLLHHVEEIDGLTIRSVQHVVLDEADRLLEMGFSDQLRDIMRQVSDVRQT 259
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
LLFSAT+PS LAEF + GLRDP ++RLD + KIS DL+L+F R +EK LLY++RE
Sbjct: 260 LLFSATMPSQLAEFVRVGLRDPQVIRLDAEMKISDDLRLSFVVTRADEKIPMLLYILREV 319
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
I QQT++F +T+HHVE L + EEG++ S YG MD ARKI++ +FRARK+ L+V
Sbjct: 320 IPDKQQTVVFTATRHHVELLMAVLEEEGVKCSAVYGSMDMAARKINIGKFRARKSEVLVV 379
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
TDVAARGIDIPLLDNV+N+DFPP+PK+FVHRVGR ARAGR+G A S +T E+M +L+DLH
Sbjct: 380 TDVAARGIDIPLLDNVVNFDFPPRPKLFVHRVGRVARAGRSGVAHSILTKEEMGFLVDLH 439
Query: 383 LFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSS 442
LFL + + AA + + + + + A ++ G P T +DLV DRVR+I S
Sbjct: 440 LFLGRSLVAASTTPPD--NREEARALCEDADREQRSVVGGAPPTSLDLVQDRVRDIFQSK 497
Query: 443 ADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDL 477
+++ +++ C NA++LY +T+ ES+ RG +L
Sbjct: 498 VEMDGMRKACDNAYKLYQRTRGSAGNESVARGAEL 532
>gi|145348205|ref|XP_001418546.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578775|gb|ABO96839.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 546
Score = 543 bits (1399), Expect = e-151, Method: Compositional matrix adjust.
Identities = 263/469 (56%), Positives = 348/469 (74%), Gaps = 10/469 (2%)
Query: 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPM 81
SGGFES+++ P+VFRA+KRKGY+VPTPIQRK +P L G DVVAMARTGSGKTAAFL+P+
Sbjct: 84 SGGFESMDILPDVFRAVKRKGYRVPTPIQRKAIPPALEGRDVVAMARTGSGKTAAFLIPV 143
Query: 82 LQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L +L H + G R +IL+PTR+LALQT KF KEL ++TDLR++ LVGGDSME+QF +L+
Sbjct: 144 LSKLRTHSLKAGARCVILAPTRELALQTFKFAKELAKFTDLRVAALVGGDSMEAQFADLS 203
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
NPD+I+ATPGRL+HH+ EV+ +L++V +VV DEAD L MGFA+QL +I+ +++ RQ
Sbjct: 204 NNPDVIVATPGRLLHHIDEVKAFTLRTVCHVVLDEADRLLEMGFADQLKQIMNSVADVRQ 263
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
TLLFSATLPSALAEF + GLR+P +VRLD + KIS DL+++F +R +EK AALLYM+RE
Sbjct: 264 TLLFSATLPSALAEFVRVGLREPEVVRLDAEMKISSDLRMSFVLMRSDEKVAALLYMLRE 323
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
I QQT++F ST+HHVE+L + EG++ S YG MD ARK+ + RFRA+K L+
Sbjct: 324 VIPKRQQTVVFASTRHHVEWLQNVLEFEGVKVSSIYGSMDMMARKMALGRFRAKKADVLV 383
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
VTDVAARGIDIPLLDNVIN+DFP K K+FVHRVGR ARAGRTG A SF+ E++ +L+DL
Sbjct: 384 VTDVAARGIDIPLLDNVINYDFPAKGKLFVHRVGRVARAGRTGNAHSFLVKEELGFLVDL 443
Query: 382 HLFLSKPIRAA----PSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVRE 437
HLFL + I AA PS E L++ +A + +I G P +D+++DR+RE
Sbjct: 444 HLFLGRKIAAASKAPPSSTEEALEI------ARKAEESATSIIGTCPIGALDMLTDRLRE 497
Query: 438 IIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMF 486
++ + + L+RT NA+RLY KT+ S ES+ R + L G HP+
Sbjct: 498 VMKAKDEFEGLERTANNAYRLYQKTRGTASSESMSRAQPLVLAGPHPLL 546
>gi|328865714|gb|EGG14100.1| putative RNA helicase [Dictyostelium fasciculatum]
Length = 1076
Score = 542 bits (1397), Expect = e-151, Method: Compositional matrix adjust.
Identities = 280/591 (47%), Positives = 393/591 (66%), Gaps = 27/591 (4%)
Query: 15 KQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKT 74
+ ++K K GGF+ ++L +F+A+ +KG+K PTPIQR T+PLIL G DVV MARTGSGKT
Sbjct: 260 QDERKKKMGGFQGMDLHKFLFKAVMKKGFKQPTPIQRLTIPLILEGQDVVGMARTGSGKT 319
Query: 75 AAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSME 134
AAF++PM+Q+L QH + G RA+ILSPTR+LALQT + KEL +DLR ++VGGD+M
Sbjct: 320 AAFVIPMIQKLAQHSHKVGARAIILSPTRELALQTYRVVKELSSGSDLRSCVIVGGDNMA 379
Query: 135 SQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILG 194
QF ELA+NPDIIIATPGRL+HHL+EV +M L +V+Y+VFDEAD LF MGFA+QL +I+
Sbjct: 380 DQFTELARNPDIIIATPGRLVHHLTEV-NMGLHTVQYIVFDEADRLFEMGFADQLQEIIT 438
Query: 195 QLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAA 254
+LS +RQTLLFSATLPS LAEF +AGL +P LVRL+ DTKIS L L+FFT R +EK AA
Sbjct: 439 KLSPSRQTLLFSATLPSMLAEFVRAGLSNPKLVRLNTDTKISDQLSLSFFTCRHDEKFAA 498
Query: 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRA 314
LLY++++ I D+ T++F +TK HVE+L++L + + + +G MD ARKI++++FR+
Sbjct: 499 LLYLLKDIIKDDEPTIVFTATKFHVEYLHILLDQARIANTFIHGQMDPVARKINLAKFRS 558
Query: 315 RKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
+ ++VTD+AARGIDIP+LDNVIN+DF PK KIF+HRVGR ARAGR GTA+S V+ ++
Sbjct: 559 KVVNVMVVTDLAARGIDIPMLDNVINFDFAPKEKIFIHRVGRVARAGRKGTAYSLVSPDE 618
Query: 375 MAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDR 434
+ Y+LDLHL+++K + + + D++ + YG PQ +ID ++
Sbjct: 619 IPYMLDLHLYIAKKLTNKLLPGQTVEDLE-------------YSFYGNIPQQIIDRENEF 665
Query: 435 VREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVLEGGE 494
V +L SL+RT NA Y +T+P S ES +R K L + HP+ N + E
Sbjct: 666 VAIKAKECVELLSLKRTIFNAHGKYVRTRPGASHESNKRAKGLDKSQYHPLMYNFINSNE 725
Query: 495 LMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQ 554
+ F + LKAFRP QT+ E + G S D+M+ KR H +I H++
Sbjct: 726 AVRNDFVQSLKAFRPNQTVFE----------MTGKKSSAADIMQTKREFHSTVIGQQHRR 775
Query: 555 RSSKSME--KEVEPEADSLMAKEIKET-HGSKRKAKTFKDEEYFISSVPTN 602
++ E K+ + +S +E T SKRK +D+E F+ + N
Sbjct: 776 TQAEIEEYKKQDQLNRNSEDGEEAASTKKNSKRKRDKNEDDEGFLQELEQN 826
Score = 46.2 bits (108), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 113/232 (48%), Gaps = 32/232 (13%)
Query: 538 KKKRAVHEKIINLVHQQRSSKSMEKEVEPEADSLMAKEIKETHGSKRKAKT-FKDEEYFI 596
KKK+ H II+ Q+ ++ ++ + A E+K SK+K ++ KDE +F+
Sbjct: 837 KKKQKGH--IIDENEQEEGDDQVKYKITIDDSESKAAELK---NSKKKTRSSTKDEAFFM 891
Query: 597 SSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKL 656
SS P+N++ E L++ +D+ + + D GG +K ++ KK++ +
Sbjct: 892 SSTPSNYYQERALAI-TDKFTRDDEVNMGTDDGQNKTPGGSSGKKWD----RKKKKFVSV 946
Query: 657 N-NGERVSASGKVVKTESGAKVKATKT--GIYKKWKERSHKKVYLKGASNEGNAE----E 709
+ +R K V+ E+G V +K +Y++WK++++ ++ G E NA +
Sbjct: 947 QADADREKERKKWVRNEAGVLVDTSKNKKNLYEEWKKKTNSRIQRTG--EEENARFMPAK 1004
Query: 710 TTSVPGGRHLGGNNRKFRGGKNQQRSVPNA---HVCSEIKDLDQVRKERQKK 758
T VP K+RG K Q + ++ + IKD+D VRKER ++
Sbjct: 1005 PTYVP---------VKWRGNKQQAAEGEDGKKKNIRTGIKDIDDVRKERDRR 1047
>gi|380029382|ref|XP_003698353.1| PREDICTED: ATP-dependent RNA helicase DDX54-like [Apis florea]
Length = 772
Score = 540 bits (1392), Expect = e-150, Method: Compositional matrix adjust.
Identities = 324/793 (40%), Positives = 469/793 (59%), Gaps = 89/793 (11%)
Query: 15 KQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKT 74
K+K KSGGF+S+ LS + + I ++GYK+PTPIQRKT+PL L G D+VAMARTGSGKT
Sbjct: 28 KKKVYKKSGGFQSMALSFPILKGILKRGYKIPTPIQRKTIPLALEGRDIVAMARTGSGKT 87
Query: 75 AAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSME 134
A FL+P+ ++L + G RALILSPTR+LALQTLKF KELGR+T L+ +L++GGD+ME
Sbjct: 88 ACFLIPLFEKLKTRQAKAGARALILSPTRELALQTLKFIKELGRFTGLKATLILGGDNME 147
Query: 135 SQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILG 194
+QF + NPDI+IATPGR +H E+ D+ L ++EYVVFDEAD LF MGF EQ+++I+
Sbjct: 148 NQFSAIHGNPDILIATPGRFLHICVEM-DLQLNNIEYVVFDEADRLFEMGFGEQINEIIN 206
Query: 195 QLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAA 254
+L E+RQTLLFSATLP L +FAK GL DP L+RLDV+ KI L L+F R E+K A
Sbjct: 207 RLPESRQTLLFSATLPKLLVDFAKIGLNDPVLLRLDVENKIPEQLTLSFIICRPEQKLAI 266
Query: 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRA 314
LL +++ I ++ QT+IF +T HHVE+++ + + G+ + Y ++D ARKI+ ++F+
Sbjct: 267 LLCLLKNVIKNNTQTVIFAATMHHVEYIHQILEKAGISNTYIYSNLDASARKINAAKFQT 326
Query: 315 RKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
K LIVTDVAARG+DIP LDNVIN++FP K K+FVHRVGR ARAGRTGTA++ V+ ++
Sbjct: 327 NKVHVLIVTDVAARGLDIPHLDNVINFNFPAKSKLFVHRVGRCARAGRTGTAYNIVSPDE 386
Query: 375 MAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDR 434
AYLLDLHLFL + + PS +I N + I G+ PQ +I+ +
Sbjct: 387 YAYLLDLHLFLGRSLHIVPS---------------SGSIQNTDGIIGKMPQAMIE---EE 428
Query: 435 VREII---DSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDL--PREGLHPMFKNV 489
+ E+I + S DL ++++ C+NA++ Y +++P S ESI+R KDL G+ P + +V
Sbjct: 429 LAELINWHNCSTDLKNMEKVCSNAYKQYIRSRPAASSESIKRVKDLHISEAGVIPEYSDV 488
Query: 490 LEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVD--VMKKKRAVH-EK 546
+ ++ +RP+ TI E G + +D +MKKKR +H E
Sbjct: 489 SSN----TMNLLSKIVNYRPQGTIFEI-----------GTKTSSIDYQIMKKKRTLHKEN 533
Query: 547 IINL------VHQQRSSKSMEKEVEPEADSLMAKEIKETHGS-----KRKA--------- 586
IIN + ++ S+ + + V+ + + EI+ + KR
Sbjct: 534 IINFRRKVDELKIKKKSEDLSRTVDLPSST--TDEIRTAFNTIVLPKKRNLDDLYKYKKK 591
Query: 587 --KTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVY 644
+DEE+FI + H E GL+V S E +DL AD+ + Q Q+
Sbjct: 592 KRSVIRDEEFFIPYYAPDKHTEEGLAVNSFNA----EAEKVQMDLTADNEESQRLQTQIK 647
Query: 645 HWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASN 703
WD++ KK I +NN + V + ++TESG + A+ K+ Y WKE+S V +N
Sbjct: 648 KWDRKKKKIITINNEQNV----RKIRTESGVWIPASYKSNRYSTWKEKSKVDV-----TN 698
Query: 704 EGNAEETTS------VPGGRHLGGNNRKFRG--GKNQQRSVPNAHVCSEIKDLDQVRKER 755
+ N+EE +S H +N+K + +N + P + K LDQ RK
Sbjct: 699 DDNSEEESSQIQKLKTIANTHWARHNQKIKEKIKRNNELKRP-EQILKARKLLDQRRKRN 757
Query: 756 QKKADRIAFMKGK 768
+K R GK
Sbjct: 758 GRKNKRSQRNNGK 770
>gi|324503749|gb|ADY41623.1| ATP-dependent RNA helicase DDX54 [Ascaris suum]
Length = 799
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 322/777 (41%), Positives = 470/777 (60%), Gaps = 71/777 (9%)
Query: 15 KQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKT 74
+ +K+ K+GG+++L L VF+AI++KGY+ PTPIQRK +PLI+ G DVVAM+RTGSGKT
Sbjct: 30 RNRKQRKAGGWQALGLDHAVFKAIEKKGYRQPTPIQRKAIPLIIDGKDVVAMSRTGSGKT 89
Query: 75 AAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSME 134
AAF+VPMLQ+L + G RAL+++PTR+LALQT KFTKELGR+T LR + LVGGDS+E
Sbjct: 90 AAFVVPMLQKLKRR-EVNGTRALLIAPTRELALQTFKFTKELGRFTGLRCAALVGGDSIE 148
Query: 135 SQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILG 194
QF + + PDIIIATPGRL+H + E+ ++ L +V+Y+VFDEAD LF MGF+EQLH+IL
Sbjct: 149 EQFGAIHEKPDIIIATPGRLLHLIIEM-NLRLTTVQYLVFDEADRLFEMGFSEQLHEILK 207
Query: 195 QLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAA 254
+L +NRQTLLFSATLP L +FAKAGL DP LVRLDVD KIS L + F T R +K +A
Sbjct: 208 RLPDNRQTLLFSATLPKMLVDFAKAGLTDPVLVRLDVDEKISDRLSMIFLTCRTADKISA 267
Query: 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRA 314
LY++R I++++ T++F +T HVE+L + + ++ V Y +D ARKI++ RFR+
Sbjct: 268 FLYLVRLAIANNEMTIVFCATMKHVEYLAAVAQRAAIDCVVLYSQLDAAARKINIERFRS 327
Query: 315 RKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
++ + LIVTDVAARG+DIPLLDN IN+ FPPK K+FVHRVGR ARAG++G ++S +++++
Sbjct: 328 KQCLLLIVTDVAARGVDIPLLDNAINFHFPPKAKLFVHRVGRVARAGKSGKSYSLISADE 387
Query: 375 MAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDR 434
+ YL DL LFL +P+ A K D E + G F +++L SD
Sbjct: 388 LPYLADLFLFLGRPLNFA---------------KPDSIYREDEPLVGVFTDDLVELESDF 432
Query: 435 VREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGL-----HPMFKNV 489
+R I D+ ++ L++ NA YS+T+P PS ES+RR K RE HP+ +
Sbjct: 433 LRAIHDNCEEMADLRKKSENAMSKYSRTRPQPSAESVRRTKTELREAFAAASPHPILRRD 492
Query: 490 LEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIIN 549
E L F + L +F+P TI E + G SQ +MKKKR H+K +
Sbjct: 493 AAPVEDARLNFLQELHSFKPHTTIFEVQS---------GNKSQPAAIMKKKRKAHQKFVK 543
Query: 550 ---LVHQQRSSKSMEKEVEPEADSL-------------MAKEIKETHGS--------KRK 585
VH S+ + ++L +K + + S RK
Sbjct: 544 EHVSVHLNVDSRPTSDDCSANKNTLNDAVQNTFHEVIRSSKFVSQKDDSLKRRKRSQSRK 603
Query: 586 AKTFKDE--EYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQV 643
A + E +FI+ P + E L+V D+GF A +D+ ADD + KQ++
Sbjct: 604 ADELERERRNHFIAYAPADAASERALAV--DRGFDAE-ARANAVDICADDITEMYKQQKR 660
Query: 644 YHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGAS 702
WD++ K+++ +GE A+ K ++TE G+ + A+ K+G Y+KW + K ++
Sbjct: 661 KKWDRKRKRFVG-ESGE--DAAKKKIRTEDGSSIPASYKSGRYEKW----YSKQKIRYRD 713
Query: 703 NEGNAEETTSVPGGRHLGGNNRKF-RGGKNQQRSVPNAHVCSEIKDLDQVRKERQKK 758
NE EE + G ++R+ RGG ++ + SE+++ +Q+ K R+KK
Sbjct: 714 NEIGGEEAGEEHSVQQSGSSHRRRKRGGIPGEKGIQGGR--SELRNPEQILKIRRKK 768
>gi|328781928|ref|XP_397101.4| PREDICTED: ATP-dependent RNA helicase DDX54-like [Apis mellifera]
Length = 772
Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust.
Identities = 323/789 (40%), Positives = 471/789 (59%), Gaps = 81/789 (10%)
Query: 15 KQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKT 74
K+K KSGGF+S+ LS + + I ++GYK+PTPIQRKT+PL L G D+VAMARTGSGKT
Sbjct: 28 KKKVYKKSGGFQSMALSFPILKGILKRGYKIPTPIQRKTIPLALEGRDIVAMARTGSGKT 87
Query: 75 AAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSME 134
A FL+P+ ++L + G RALILSPTR+LALQTLKF KELGR+T L+ ++++GGD+ME
Sbjct: 88 ACFLIPLFEKLKIRQAKVGARALILSPTRELALQTLKFIKELGRFTGLKATIILGGDNME 147
Query: 135 SQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILG 194
+QF + NPDI+IATPGR +H E+ D+ L ++EYVVFDEAD LF MGF EQ+++I+
Sbjct: 148 NQFSAIHGNPDILIATPGRFLHICIEM-DLQLNNIEYVVFDEADRLFEMGFGEQINEIIN 206
Query: 195 QLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAA 254
+L E+RQTLLFSATLP L +FAK GL DP L+RLDV+ KI L L+F R E+K A
Sbjct: 207 RLPESRQTLLFSATLPKLLVDFAKIGLNDPVLLRLDVENKIPEQLTLSFIICRPEQKLAI 266
Query: 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRA 314
LL +++ I ++ QT+IF +T HHVE+++ + + G+ + Y ++D ARKI+ ++F+
Sbjct: 267 LLCLLKNIIKNNTQTVIFAATMHHVEYIHQILEKAGISNTYIYSNLDASARKINAAKFQT 326
Query: 315 RKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
K LIVTDVAARG+DIP LDNVIN++FP K K+FVHRVGR ARAGRTGTA++ V+ ++
Sbjct: 327 NKVHVLIVTDVAARGLDIPHLDNVINFNFPAKSKLFVHRVGRCARAGRTGTAYNIVSPDE 386
Query: 375 MAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDR 434
AYLLDLHLFL + + P +I N + I G+ PQ +I+ +
Sbjct: 387 YAYLLDLHLFLGRSLHIVPP---------------SGSIQNTDGIIGKLPQAMIE---EE 428
Query: 435 VREII---DSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDL--PREGLHPMFKNV 489
+ E+I + S DL ++++ C NA++ Y +++P S ESI+R KDL G+ P + +V
Sbjct: 429 LVELINWHNCSTDLKNMEKVCNNAYKQYIRSRPAASSESIKRVKDLHISEAGVIPEYSDV 488
Query: 490 LEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVH-EKII 548
+ ++ +RP+ TI E + SS VMKKKR +H E I+
Sbjct: 489 SSN----TMNLLSKIVNYRPQGTIFEIGAKT---------SSIDYQVMKKKRTLHKENIL 535
Query: 549 NL---VHQQRSSK-------------SMEKEVEPEADSLM---AKEIKETHGSKRKAKT- 588
N V++ + K S E+ ++++ + + + + K+K ++
Sbjct: 536 NFRRKVNELKIKKKSEDLSRTVDLPSSTNDEINTAFNTIVFPKKRNLDDLYKPKKKKRSV 595
Query: 589 FKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDK 648
+DEE+FI + H E GL+V S F E +DL AD+ + Q Q+ WD+
Sbjct: 596 IRDEEFFIPYYAPDKHTEEGLAVNS---FN-TEAEKVQMDLTADNEESQRLQAQIKKWDR 651
Query: 649 RGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNA 707
+ KK I +NN + V + ++TESG + A+ K+ Y WKE+S V +N+ N+
Sbjct: 652 KKKKIITINNEQNV----RKIRTESGVWIPASYKSNRYSTWKEKSKVDV-----TNDDNS 702
Query: 708 EETTS------VPGGRHLGGNNRKFRG--GKNQQRSVPNAHVCSEIKDLDQVRKERQKKA 759
EE +S H +N+K + +N + P + K LDQ RK +K
Sbjct: 703 EEESSQIQKLKTIANTHWARHNQKIKEKIKRNNELKRP-EQILKARKLLDQRRKRNGRKN 761
Query: 760 DRIAFMKGK 768
R GK
Sbjct: 762 KRSQRNNGK 770
>gi|384495385|gb|EIE85876.1| hypothetical protein RO3G_10586 [Rhizopus delemar RA 99-880]
Length = 958
Score = 537 bits (1383), Expect = e-150, Method: Compositional matrix adjust.
Identities = 316/740 (42%), Positives = 453/740 (61%), Gaps = 77/740 (10%)
Query: 17 KKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAA 76
+K KSGGF+S+ LS +F+A+ KG+KVPTPIQRK +PL+L G DVV MARTGSGKTAA
Sbjct: 153 RKNKKSGGFQSMGLSNPIFKAVLHKGFKVPTPIQRKCIPLVLQGDDVVGMARTGSGKTAA 212
Query: 77 FLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQ 136
FL+PML+RL H + G R+L+LSP+R+LALQT K KEL +YTDLR +VGGDS++ Q
Sbjct: 213 FLIPMLERLKAHSAKTGARSLVLSPSRELALQTQKVCKELMKYTDLRSCCIVGGDSLDEQ 272
Query: 137 FEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL 196
FE +A NPDI+IATPGRL+H E+ ++ L++VEYVVFDEAD LF MGFA QLH+IL +L
Sbjct: 273 FEMIASNPDILIATPGRLLHLAVEM-NLDLRTVEYVVFDEADRLFEMGFAIQLHEILSRL 331
Query: 197 SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALL 256
NRQTLLFSATLP L +FAKAGL++P L+RLDVDTKIS DL++AFF+++ EK ALL
Sbjct: 332 PPNRQTLLFSATLPKMLVDFAKAGLQEPTLIRLDVDTKISRDLEMAFFSVKDNEKDGALL 391
Query: 257 YMIREHIS-------------------------SDQQTLIFVSTKHHVEFLNVLFREEGL 291
Y++R I +D+QT++F +TKHHVE+L L G
Sbjct: 392 YLLRNIIQLPKKTGNEEKGTLGKKGKKKMSATEADRQTILFAATKHHVEYLAGLLTIAGY 451
Query: 292 EPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFV 351
+ S YG +DQ AR I ++RFR T L+VTDVAARGIDIP+L+NVIN+DF K+FV
Sbjct: 452 QVSYVYGSLDQAARSIQINRFRQGVTNILVVTDVAARGIDIPVLENVINYDFCGSSKVFV 511
Query: 352 HRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQ 411
HRVGRAARAGR G A+S VTS+++ YL+DL LFL++P+ +L D D+
Sbjct: 512 HRVGRAARAGRRGWAYSLVTSDELPYLVDLELFLTRPL---------VLGGDK-----DE 557
Query: 412 AIANGETIYGRFPQTVIDLVSDR--VREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKE 469
E + G P V L+ D+ V ++ A L RT NA++LY++TK + E
Sbjct: 558 YDYTSELVVGTLP--VDALIDDQTWVTNQVERDAALEGTYRTAMNAYKLYNRTKSRAAPE 615
Query: 470 SIRRGKDLPREG----LHPMFKNVL--EGGELMALAFSERLKAFRPKQTILEAEGEAARS 523
S R K++ ++ LHP+ K+ + ++ + + FRP +TI E R
Sbjct: 616 SYSRAKEVIKKKNYSQLHPLLKHTVGTSAADIERANMIQAISGFRPAETIFEV---GVRG 672
Query: 524 KHLQGPSSQWVDVMKKKRAVHEKIINL---------VHQQRSSKSMEKEVEPEADSLMAK 574
P++ +M+++R +K+I ++ ++S K++E D +
Sbjct: 673 SRKLTPATA---MMRERREAVDKVIAAHKSKLEAEEADEKDKTESTPKKIELGGD-VEED 728
Query: 575 EIKETHG-----SKRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDL 629
E+ +T +K ++F+DEEY++S + + E G S+ S F + A LDL
Sbjct: 729 ELAKTFNIPAARENKKKQSFRDEEYYLSYTQKDANTERGYSMTSKGNFA-EQASKAQLDL 787
Query: 630 VADDSGGLQKQKQVYHWDKRGKKYIKLNNGERV-SASGKVVKTESGAKVKAT-KTGIYKK 687
+ DD G++K + + WD + KK+++ G + S + K+++TESGA + A+ K+G + +
Sbjct: 788 IGDDQDGIKKNQNMLRWDSKKKKFVR---GTGIGSDNKKMIRTESGALISASYKSGRFDE 844
Query: 688 WKERSHKKVYLKGASNEGNA 707
W ++ H + G NA
Sbjct: 845 WAKKKHISIPRAGERELDNA 864
>gi|358416383|ref|XP_615157.5| PREDICTED: ATP-dependent RNA helicase DDX54 [Bos taurus]
Length = 885
Score = 537 bits (1383), Expect = e-149, Method: Compositional matrix adjust.
Identities = 325/794 (40%), Positives = 463/794 (58%), Gaps = 72/794 (9%)
Query: 13 REKQKKKSKSGGFESLN---------LSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADV 63
R + KKK KSGGF+S+ R P RKT+P+IL G DV
Sbjct: 86 RAQNKKKKKSGGFQSMGGPXXXXXXXXXXXXXXXXXRSPTSFPIHKWRKTIPMILDGKDV 145
Query: 64 VAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLR 123
VAMARTGSGKTA FL+PM +RL H Q G RALILSPTR+LALQT+KFTKELG++T L+
Sbjct: 146 VAMARTGSGKTACFLIPMFERLKTHSAQTGARALILSPTRELALQTMKFTKELGKFTGLK 205
Query: 124 ISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM 183
+L++GGD ME QF L +NPDIIIATPGRL+H E+ ++ L+SVEYVVFDEAD LF M
Sbjct: 206 TALILGGDKMEDQFAALHENPDIIIATPGRLVHVAVEM-NLKLQSVEYVVFDEADRLFEM 264
Query: 184 GFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAF 243
GFAEQL +I+G+L QT+LFSATLP L EFA+AGL +P L+RLDVD+K++ LK +F
Sbjct: 265 GFAEQLQEIIGRLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDSKLNEQLKTSF 324
Query: 244 FTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQD 303
F +R++ K A LL+++R + QT++FV+TKHH E+L+ L +G+ + Y +DQ
Sbjct: 325 FLVREDAKAAVLLHLLRNVVRPQDQTVVFVATKHHAEYLSELLATQGVSCAHIYSALDQT 384
Query: 304 ARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRT 363
ARKI+++RF K LIVTD+AARG+DIPLLDNVIN+ FP K K+F+HRVGR ARAGR+
Sbjct: 385 ARKINLARFTHGKCSALIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRS 444
Query: 364 GTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRF 423
GTA+S V +++ YLLDLHLFL + + A EE G+ + GR
Sbjct: 445 GTAYSLVAPDEVPYLLDLHLFLGRALTLARPPEE------------PSGTEGGDGVLGRV 492
Query: 424 PQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK--DLPREG 481
PQ V+D +R +++S +L L R NA + Y +++P PS ESI+R K DL G
Sbjct: 493 PQGVVDDEDCGLRTSLEASLELRGLSRVANNAQQQYVRSRPAPSPESIKRAKELDLAGLG 552
Query: 482 LHPMFKNVLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKR 541
LHP+F + + EL L + ++ +R + TI E A S+ L SSQ VM+ KR
Sbjct: 553 LHPLFSSRFQQEELQRLRLVDSIRNYRSRATIFEIN---ASSRDL---SSQ---VMRAKR 603
Query: 542 AVHEKIINLVHQQRSSKS------------------MEKEVEPEADSLMAKEI----KET 579
K I Q R + ++EV E+ + E+ ++
Sbjct: 604 EKDRKAIASFQQGRQERQEGPAGPTPSLPAPQEEQPEKEEVAGESVEDVFTEVVGRKRQQ 663
Query: 580 HGSKRKAKTF------KDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADD 633
G +R AK +D+ ++I P + E GLS+ D G ++ A LDL+ D+
Sbjct: 664 PGPQRGAKRRREEARQRDQAFYIPYRPKDFDSERGLSIGGDGGAFEQQVAGAALDLMGDE 723
Query: 634 SGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERS 692
+ L + +Q WD++ K+++ G+ K +KTESG + ++ K +Y+KWK++
Sbjct: 724 AQSLTRGRQQLRWDRKKKRFV----GQSGQEDKKKIKTESGRYISSSYKRDLYQKWKQK- 778
Query: 693 HKKVYLKGASNEGNAEETTSVPGGRHLGGNNRKFRGGKNQQRSVPNAHVCSEIKDLDQVR 752
+K+ + + EG + R G R + + P V SE+K Q+
Sbjct: 779 -QKIDDRDSEEEGTFDRRGPE---RRGGKRGRGQGASQPRTPGTPAGRVLSELKTKQQIL 834
Query: 753 KERQKKADRIAFMK 766
K+R ++A ++ F++
Sbjct: 835 KQR-RRAQKMRFLQ 847
>gi|383849107|ref|XP_003700188.1| PREDICTED: ATP-dependent RNA helicase DDX54-like [Megachile
rotundata]
Length = 770
Score = 536 bits (1382), Expect = e-149, Method: Compositional matrix adjust.
Identities = 306/704 (43%), Positives = 437/704 (62%), Gaps = 68/704 (9%)
Query: 15 KQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKT 74
K+K SKSGGF+S+ LS V + I R+GYK+PTPIQRKT+PL L G DVVAMARTGSGKT
Sbjct: 28 KKKACSKSGGFQSMALSYPVLKGILRRGYKIPTPIQRKTIPLALEGRDVVAMARTGSGKT 87
Query: 75 AAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSME 134
A FL+P+ ++L + G RALILSPTR+LALQTLKF KELGR+T L+ ++++GGD+ME
Sbjct: 88 ACFLIPLFEKLKARQTKIGARALILSPTRELALQTLKFIKELGRFTGLQAAVILGGDNME 147
Query: 135 SQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILG 194
+QF + NPDI++ATPGR +H E+ D+ L S+EYVVFDEAD LF MGF EQ+++I
Sbjct: 148 NQFSTIHGNPDILVATPGRFLHICIEM-DLQLNSIEYVVFDEADRLFEMGFGEQINEITN 206
Query: 195 QLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAA 254
+L E+RQTLLFSATLP L +FAKAGL DP L+RLDVD+KI +L L+F R EEK A
Sbjct: 207 RLPESRQTLLFSATLPKVLVDFAKAGLTDPVLLRLDVDSKIPEELALSFIVCRPEEKLAV 266
Query: 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRA 314
LL +++ I SD QT+IF +T HHVE+++++ + G+ + Y ++D ARKI+ ++F+
Sbjct: 267 LLCLLKNVIKSDSQTVIFAATMHHVEYIHMVLDKAGISNTFIYSNLDPSARKINAAKFQT 326
Query: 315 RKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
K L+VTDVAARG+DIP LDNVIN++FP K K+FVHRVGR ARAGRTGTA++ + ++
Sbjct: 327 NKVKVLVVTDVAARGLDIPHLDNVINFNFPAKSKLFVHRVGRCARAGRTGTAYNIIGPDE 386
Query: 375 MAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDR 434
AYLLDLHLFLS+P+ P G + AI G+ PQ++I+ +
Sbjct: 387 YAYLLDLHLFLSRPLHIIPP--------SGTAEGTEGAI-------GKMPQSMIE---EE 428
Query: 435 VREII---DSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDL--PREGLHPMFKNV 489
+ E+I +SS DL ++++ C NA++ Y +++P S ESI+R K+L + G+ P + +V
Sbjct: 429 LAELINWHNSSTDLQNMEKVCENAYKQYIRSRPTASSESIKRVKELNINQAGVIPEYSDV 488
Query: 490 LEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIIN 549
L ++ +RP+ TI E +A+ + + VMK KR++H++ I
Sbjct: 489 SSN----TLNLLSKIVNYRPQGTIFEIGAKASSTDY---------QVMKTKRSLHKQNIK 535
Query: 550 LVHQQ-----RSSKSMEKEVEPEADSLMAKEIKETHGS-----------------KRKAK 587
+++ K E + + S A EI T + K+K
Sbjct: 536 NFYRKTEELISKKKLEESSKKVDLPSSTADEINATFNTIVLPKKRNFNDLYKPPKKKKRS 595
Query: 588 TFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWD 647
+DE++FI + H E GL+V S + +DL AD+ + Q+ WD
Sbjct: 596 VTRDEDFFIPYAAPDKHTEDGLAVNSFN----TEADKVQMDLTADNEESQRLHSQLKKWD 651
Query: 648 KRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKE 690
++ KK I +++G K ++TESG + A+ KT Y WKE
Sbjct: 652 RKKKKMITIDDG----GKAKKIRTESGVWIPASYKTNRYSAWKE 691
>gi|270000966|gb|EEZ97413.1| hypothetical protein TcasGA2_TC011242 [Tribolium castaneum]
Length = 761
Score = 536 bits (1382), Expect = e-149, Method: Compositional matrix adjust.
Identities = 316/760 (41%), Positives = 452/760 (59%), Gaps = 81/760 (10%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ + LS NV + I ++GY+ PTPIQRKT+PL+L G DVVAMARTGSGKTA FL+PM ++
Sbjct: 35 FQCMGLSYNVLKGITKRGYQQPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMFEK 94
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L + G RALILSPTR+LALQTLKF KELGR+T L+ ++++GGDSM+ QF + NP
Sbjct: 95 LKIRSAKAGARALILSPTRELALQTLKFIKELGRFTGLKSAVILGGDSMDDQFSAIHGNP 154
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
DII+ATPGR +H E+E + L SVEYVVFDEAD LF MG EQL +I+ +L + RQT+L
Sbjct: 155 DIIVATPGRFLHVCIEME-LKLNSVEYVVFDEADRLFEMGLGEQLTEIVNRLPDARQTVL 213
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSATLP L EFAKAGL DP L+RLDV++KI +L+L + +R EE+ AALL +++ HI
Sbjct: 214 FSATLPKVLVEFAKAGLNDPVLLRLDVESKIPEELQLWYIIVRPEERLAALLVLLKTHID 273
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
+ QQT++F +T+HHVE+++++ G+ + Y ++D ARKI+ ++F K L+VTD
Sbjct: 274 NKQQTVVFAATRHHVEYIHMILDRVGVSNTYIYSNLDPSARKINAAKFSTGKVKVLVVTD 333
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
VAARGIDIP LDNVIN++FP K K+FVHRVGR ARAGR+GTA+S VT ++ YLLDLHLF
Sbjct: 334 VAARGIDIPQLDNVINYNFPAKSKLFVHRVGRCARAGRSGTAYSLVTPDEYPYLLDLHLF 393
Query: 385 LSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSAD 444
L +P+ E E G+ PQ +++ + + +++ D
Sbjct: 394 LGRPLSIKTRTE-------------------NEGSVGKIPQALLEEQHSALLTLHENNID 434
Query: 445 LNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDL--PREGLHPMFKNVLEGGELMALAFSE 502
L S+++ NA+ Y +++P S +S RR K+L G+HP+F + E E E
Sbjct: 435 LVSMKKVTENAYLQYVRSRPAASSDSNRRVKELAFASCGIHPIFGDYKEYVEEERENLLE 494
Query: 503 RLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKSMEK 562
++K++RP+ TI E G+ SQ +MK+KR+ H++ I HQ + K EK
Sbjct: 495 KMKSYRPQGTIFEICGKN---------KSQEYQIMKQKRSFHKEKITSFHQNQEQKENEK 545
Query: 563 EVEPEADS------------------LMAKEIKETHGSKRKAKTFKDEEYFISSVPTNHH 604
++ D + K+ K + KR K +E FI +P + H
Sbjct: 546 QLLNHKDETTLAKSSSEDIDDAFDRVITPKKRKLENLYKRNKKQKTKDENFIPYLPADRH 605
Query: 605 MEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSA 664
E GL++ + N LDL D + ++K Q WD++ KK + + +
Sbjct: 606 TEEGLAINNFH----NEASKVALDLTGDSAETMRKSVQAKKWDRKKKKMVAVPDKR---- 657
Query: 665 SGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNAEETTSVPGGR------ 717
SGK +KTESG + AT K+ Y +WKE+S K+ G SN + + T G +
Sbjct: 658 SGK-IKTESGVWIPATYKSNRYAQWKEKS--KI---GQSNSDDENDETGPSGPKLHTEAK 711
Query: 718 -HLGGNNRKFRGGKNQQRSVPNAHVCSEIKDLDQVRKERQ 756
H +N+K + +QR SE+K DQ+ K R+
Sbjct: 712 THWARHNKKL---QQKQRK-------SELKTTDQILKARK 741
>gi|156552297|ref|XP_001600622.1| PREDICTED: ATP-dependent RNA helicase DDX54-like [Nasonia
vitripennis]
Length = 782
Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust.
Identities = 308/698 (44%), Positives = 439/698 (62%), Gaps = 69/698 (9%)
Query: 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPML 82
GGF+S+ LS +V R I ++GYK+PTPIQRKT+P+ L G DVVAMARTGSGKTA FL+PM
Sbjct: 38 GGFQSMGLSQSVIRGILKRGYKIPTPIQRKTIPIALDGRDVVAMARTGSGKTACFLIPMF 97
Query: 83 QRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
++L + G RALILSPTR+LALQT +F KE+GR+T L+ S+++GGDSM++QF +
Sbjct: 98 EKLKTRQAKTGARALILSPTRELALQTQRFIKEIGRFTGLKSSVILGGDSMDNQFSAIHG 157
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
NPDII+ATPGR +H E+ DM+LKS+E+V+FDEAD LF MGF EQ+H+I +L +NRQT
Sbjct: 158 NPDIIVATPGRFLHICIEM-DMNLKSIEFVIFDEADRLFEMGFGEQIHEIANRLPKNRQT 216
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
LLFSATLP L EFA AGLR+P LVRLDV++K+ +LKL F T R EEK A L+ ++++
Sbjct: 217 LLFSATLPKVLVEFATAGLRNPVLVRLDVESKLPDELKLCFITCRPEEKLAVLMCLLKQV 276
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
I QT+IF +T HHVE+++ + + G+ + Y ++D ARKI+ ++F+ K L+V
Sbjct: 277 IKPGAQTVIFAATMHHVEYIHQILDQAGILNTFIYSNLDPSARKINAAKFQNGKVKVLVV 336
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
TDVAARGIDIP LDNVIN++FP K K+F+HRVGR ARAGR+GTA++ V ++ AYLLDLH
Sbjct: 337 TDVAARGIDIPHLDNVINFNFPAKSKLFIHRVGRCARAGRSGTAYNIVAPDEYAYLLDLH 396
Query: 383 LFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREII--- 439
LFL + P E + I G G+ PQ++I+ + + E+I
Sbjct: 397 LFLGRSFNIVPVSEA-------------KNIPEGSI--GKMPQSMIE---EELSELIAWH 438
Query: 440 DSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK--DLPREGLHPMFKNVL-EGGELM 496
++ D+ ++Q C NA++ Y +++P S ES +R K D+ R G+ P F++ E L+
Sbjct: 439 ENVTDIANMQNVCNNAYQQYCRSRPPASAESNKRIKELDINRAGILPEFRDANDEAANLL 498
Query: 497 ALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVH-EKIINLVH--Q 553
+ ++K++RP+ TI E + PSS VMK+KRA H E IIN +
Sbjct: 499 S-----KMKSYRPRGTIFEI---------VAKPSSVDYKVMKEKRAFHKENIINHYKKVE 544
Query: 554 QRSSKSMEKEVEP------EADSLMAKEIKETHGSKRKAKTF------------KDEEYF 595
+R ++ EP AD + A + KRK KD+E++
Sbjct: 545 EREIRTAACAAEPSKLPASSADEINAAFSEVIAPKKRKMDDLYKNDKKKKQKVLKDDEFY 604
Query: 596 ISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIK 655
I + H EAGL+V + F E A ++ AD+ ++Q Q+ WD++ KK +
Sbjct: 605 IPYAAVDSHTEAGLAVNT---FA-TEAEKAQIEFTADNEESRRQQTQIKKWDRKKKKMVT 660
Query: 656 LNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERS 692
+NN S +GK ++TESG + AT KT Y +WKE++
Sbjct: 661 VNNN---SKTGK-IRTESGVWIPATYKTKRYSQWKEKN 694
>gi|298708839|emb|CBJ30797.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 819
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 279/561 (49%), Positives = 375/561 (66%), Gaps = 36/561 (6%)
Query: 15 KQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKT 74
K K K G F+++ L ++FR I GYKVPTP+QRK++P+ L+GADVV MARTGSGKT
Sbjct: 2 KPPAKPKVGSFQAMGLGQDLFRGIMAMGYKVPTPVQRKSLPVTLAGADVVVMARTGSGKT 61
Query: 75 AAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSME 134
AAFL+P+L++L H + G R++ILSPTR+LA+QTL F +++ + DLR++LLVGGDSM+
Sbjct: 62 AAFLIPVLEKLGSHSHKMGARSIILSPTRELAVQTLTFARKMSKLKDLRMALLVGGDSMD 121
Query: 135 SQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILG 194
QF LA NPDIIIATPGRLMHHL EV + +L+SVE VVFDEAD LF MGFAEQL +I+
Sbjct: 122 KQFTALADNPDIIIATPGRLMHHLQEVPEFTLRSVEVVVFDEADRLFEMGFAEQLREIMR 181
Query: 195 QLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAA 254
+ E RQ+LLFSAT+P L +FA+AGL+DP L+RLD ++KIS +L LAF T R +K AA
Sbjct: 182 GVPEERQSLLFSATMPKQLVQFARAGLKDPVLIRLDTESKISTELSLAFLTCRSLDKPAA 241
Query: 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRA 314
LL+++RE I T++FV+T+HH EFL+ L +E G SV YG MDQ+AR IH+ +FR
Sbjct: 242 LLFLLREVIPEGDMTIVFVATRHHAEFLHELLKEAGTASSVVYGAMDQEARSIHLDKFRK 301
Query: 315 RKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
KT L+VTDVAARGID+PLL+NVIN+ FPP PK+FVHRVGRAAR GRTGTA+S V E+
Sbjct: 302 GKTKLLVVTDVAARGIDVPLLNNVINYAFPPAPKLFVHRVGRAARQGRTGTAYSIVDPEE 361
Query: 375 MAYLLDLHLFLS-KP--IRAAP--------------------SEEEVLLDMDGVMSKIDQ 411
+ ++LDLHLFL KP + AP E+E G + D
Sbjct: 362 IPHMLDLHLFLGRKPTNVYTAPKGPGPDGATVDGVGAGGGDAEEQE---GERGAIVGYDV 418
Query: 412 AIANGETI-YGRFPQTVIDLVSDRVREII-DSSADLNSLQRTCTNAFRLYSKTKPLPSKE 469
+ N + + YG FPQ V+D ++ ++E++ +S ++L+ L+R C NA + Y +T+P PS
Sbjct: 419 SELNPDLVHYGNFPQQVMDDENESLKEMLGNSGSNLSGLERVCQNAMKQYRRTRPDPSGR 478
Query: 470 SIRRGKDLPREGLHPMFKNVLEGGELMALAFSER------LKAFRPKQTILEAEGEAARS 523
+I R K L R HP+ G A A + R + +FRPK+TI E G
Sbjct: 479 AIARAKLLDRGETHPLLVGFEARGMHSAAAHAGRNQFMRAMSSFRPKETIFELLGGGG-- 536
Query: 524 KHLQGPSSQWVDVMKKKRAVH 544
+G Q + ++K+ VH
Sbjct: 537 TEAKGDMDQVMGAVRKRARVH 557
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 9/95 (9%)
Query: 589 FKDEEYFIS--SVPTNHHMEAGLSVRSDQ----GFGLNRLEAAVLDLVADDSGGLQKQKQ 642
F D+ ++I + + +EA L RS + GF RLE A+LD+ D++ + K+++
Sbjct: 717 FADKAFYIGYGTTEASSFVEAALQPRSVEKSGDGFAAGRLEEAILDVNPDEAVDMAKKQR 776
Query: 643 VYHWDKRGKKYIKLNNG---ERVSASGKVVKTESG 674
+ HWD R KK++K ER + + ++TESG
Sbjct: 777 LLHWDSRKKKFVKTTLAELSERKTGGSRKIRTESG 811
>gi|340384313|ref|XP_003390658.1| PREDICTED: ATP-dependent RNA helicase DDX54-like [Amphimedon
queenslandica]
Length = 708
Score = 530 bits (1365), Expect = e-147, Method: Compositional matrix adjust.
Identities = 319/734 (43%), Positives = 451/734 (61%), Gaps = 83/734 (11%)
Query: 51 RKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQ-GGVRALILSPTRDLALQT 109
R+T+PLI+ G DVVAMARTGSGKTAAFL+P+ +RL H PQ GVR LILSPTR+LALQT
Sbjct: 14 RRTIPLIMDGKDVVAMARTGSGKTAAFLIPLFERLKSHSPQVSGVRGLILSPTRELALQT 73
Query: 110 LKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSV 169
+KFTKELGR+T LR ++++GGD +E QF + +NPDIIIATPGR +H L E+ DM L V
Sbjct: 74 MKFTKELGRFTGLRAAVILGGDRIEDQFSTMHENPDIIIATPGRFLHLLLEM-DMKLLHV 132
Query: 170 EYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRL 229
EYVVFDEAD LF MGF+EQLH+I+ +L E RQTLLFSATLP L +FAKAGL DP L+RL
Sbjct: 133 EYVVFDEADRLFEMGFSEQLHEIIHKLPEQRQTLLFSATLPKMLVDFAKAGLTDPVLIRL 192
Query: 230 DVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE 289
DVD+K+S L L+F T+ LLY++R I +QQ++IFV+TKHHVE+L +
Sbjct: 193 DVDSKLSNQLSLSFLTV--------LLYLLRSVIPPNQQSVIFVATKHHVEYLKEILSSA 244
Query: 290 GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKI 349
G++ S YG +DQ ARKI + +F +KT L+VTD+AARGIDIPLLDNVIN+ FP K K+
Sbjct: 245 GIDSSYVYGSLDQTARKISIGKFLYKKTNVLLVTDIAARGIDIPLLDNVINYHFPSKAKL 304
Query: 350 FVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKI 409
FVHRVGR ARAGRTGTA+S V+ ++ AY++DLHLFL + I +E + DGV
Sbjct: 305 FVHRVGRVARAGRTGTAYSLVSPDEGAYVVDLHLFLGRNI---ITESRASKESDGV---- 357
Query: 410 DQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKE 469
YG P I+ + + ++ +++ +L SL++ N + Y K++ L S E
Sbjct: 358 ----------YGSVPHIAIEDEDELLIKLHNNNEELVSLRKVAENGMKHYIKSRNLSSPE 407
Query: 470 SIRRGKDLPRE-GLHPMFKN-----VLEGGELMALAFSERLKAFRPKQTILEAEGEAARS 523
SIRR K+L HP+F + +E GEL++ LK ++P QTI E
Sbjct: 408 SIRRAKELANSLHPHPLFGSHCLTAQVERGELLSA-----LKTYKPSQTIFEVNSTT--- 459
Query: 524 KHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKSMEKEVEPEADSLMAKEIKETHGSK 583
+G + + VM KRA +++++ + +E + KE + G +
Sbjct: 460 ---KGVAKK---VMLSKRAKYDQVVMTL----------REKSNQRKKEEEKEEEREKGEE 503
Query: 584 RKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQV 643
R+ K+ + +I+ P++HH E GLS+ + +AVLDL D++ +QK K++
Sbjct: 504 RRDKSVTAPQPYINYKPSDHHTEKGLSIDHFEEAA----SSAVLDLTGDENNDMQKAKRI 559
Query: 644 YHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGAS 702
WD++ K+++ + E +S K +KTESG + +T KTG+Y+ WK ++ KV
Sbjct: 560 RKWDRKRKRFVTESGKE---SSTKKIKTESGRWISSTYKTGLYQTWKTKN--KV------ 608
Query: 703 NEGNAEETTSVPG--GRHLGGNNRKFRGGKNQQRSVPNAHVCSEIKDLDQVRKERQKKAD 760
EGN+ ++ + P R G N + V SEIK ++++ ++RQK
Sbjct: 609 -EGNSMDSETPPARFARRKGRFNPR---QSTGGAGGTGRRVKSEIKSVNEILRKRQK--- 661
Query: 761 RIAFMKGKTQKGKK 774
I FMK + Q K+
Sbjct: 662 -INFMKERRQINKR 674
>gi|170590083|ref|XP_001899802.1| DEAD/DEAH box helicase family protein [Brugia malayi]
gi|158592721|gb|EDP31318.1| DEAD/DEAH box helicase family protein [Brugia malayi]
Length = 782
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 313/808 (38%), Positives = 474/808 (58%), Gaps = 90/808 (11%)
Query: 15 KQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKT 74
+ +K+ +GG++++ L +F+ I++KG++ PTPIQRK +P+I+ G D+VAM+RTGSGKT
Sbjct: 23 QNRKQRHAGGWQTIGLDHTLFKGIQKKGFRQPTPIQRKAIPIIIDGKDIVAMSRTGSGKT 82
Query: 75 AAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSME 134
AAF++P+LQ+L G+RALI+ PTR+LA+QT KELGR+T LR ++LVGGD +E
Sbjct: 83 AAFVIPILQKLKVR-DMKGIRALIIEPTRELAMQTFTVVKELGRFTGLRCAVLVGGDRIE 141
Query: 135 SQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILG 194
QF+ + + PDI+IATPGRL+H + E+ D L +V+ +VFDEAD LF MGFAEQLH++L
Sbjct: 142 EQFQTVHEKPDIVIATPGRLLHVIVEM-DFRLSAVQVIVFDEADRLFEMGFAEQLHEVLK 200
Query: 195 QLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAA 254
+L ENRQTLLFSATLP ++ F+KAGL DP LVRLD+ KIS L + F R ++K AA
Sbjct: 201 RLPENRQTLLFSATLPKSIIAFSKAGLSDPVLVRLDLAEKISDKLSMMFLYCRTDDKLAA 260
Query: 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRA 314
L++ RE +++++QT++F +T HVE+L + + G++ V Y +D AR I++ +FR
Sbjct: 261 FLHLAREVVAANEQTIVFCATMKHVEYLAAVAGKAGIDCVVLYSQLDSVARNINIQKFRK 320
Query: 315 RKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
++ LIVTD+AARG+DIPLLD IN+ FP KPK+FVHRVGR ARAGR+G A S +++
Sbjct: 321 KECSLLIVTDIAARGVDIPLLDVAINYHFPSKPKLFVHRVGRVARAGRSGKAISLFGADE 380
Query: 375 MAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDR 434
+ Y++DL LFL++P++ A + ++++ E + G FP +ID D
Sbjct: 381 VPYVIDLFLFLNRPLKFATT----------------SSVSSDEALIGIFPDGIIDREIDF 424
Query: 435 VREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGL-----HPMFKNV 489
++ + D+S +L+ L + NA + Y KT+P PS ES+RR KD +E L HP +
Sbjct: 425 LKNVHDNSDELDDLLKKSENAMQKYKKTRPQPSAESVRRAKDEVKEALFKASVHPFLQQE 484
Query: 490 LEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIIN 549
E + F L F+ TI E + G + VMK+KR H+ I+
Sbjct: 485 -SPEEAVRQLFLRDLHNFKSTTTIFEIQS---------GSKALSAAVMKEKRKAHQSYIH 534
Query: 550 LVHQQRSSKSMEKE------VEPEAD-------------------SLMAKEIKETHGSKR 584
+++ EP D +LM K+ K G KR
Sbjct: 535 SKTNSDKCTDLDQSEITDSTFEPSEDILKDTFQAVIRNTKFSAVNALMQKKYK---GRKR 591
Query: 585 KAKTFKDE--EYFISSVPTNHHMEAGLSVRSDQGFGLNRL-EAAVLDLVADDSGGLQKQK 641
KA +E ++FI+ P + E GL+V D N L +A+ ++++ADD G KQ+
Sbjct: 592 KANELLEEKKKHFIAYAPVEANAERGLAVDHD----FNALAKASAIEILADDEVGFYKQE 647
Query: 642 QVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKG 700
+ WD++ K+++ N + S K ++TE G + AT K+G Y+KW+ KK L+
Sbjct: 648 KRKKWDRKLKRFVGSNGDD----SKKKIRTEDGTYLPATYKSGRYEKWQ----KKQKLEY 699
Query: 701 ASNEGNAEETTSVPGGRHLGGNNRKFR----GGKNQQRSVPNAHVC-SEIKDLDQVRKER 755
+N+G+ +ET G FR GK ++ + N SE+K +Q+ K+R
Sbjct: 700 QNNDGDNDETVD------QGVKQHDFRVRSGSGKRRRNKMGNEKAPRSELKTSEQILKQR 753
Query: 756 QKKADRIAFMKGKTQKGKKFSKNGKRGK 783
+KA ++ + Q+ K K G GK
Sbjct: 754 NRKARIQSYQSYRRQQNLK--KKGVIGK 779
>gi|407926601|gb|EKG19568.1| RNA helicase ATP-dependent DEAD-box conserved site [Macrophomina
phaseolina MS6]
Length = 913
Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust.
Identities = 333/825 (40%), Positives = 471/825 (57%), Gaps = 103/825 (12%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+++ L+ NV +AI RKG+ VPTPIQRKT+PL+L G DVV MARTGSGKTAAF++P
Sbjct: 87 KGGGFQAMGLNANVLKAITRKGFSVPTPIQRKTIPLVLDGQDVVGMARTGSGKTAAFVIP 146
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M++RL H + G RA+I+SP+R+LALQTLK KELGR TDLR LLVGGDS+E QF ++
Sbjct: 147 MIERLKAHSAKVGARAIIMSPSRELALQTLKVVKELGRGTDLRTVLLVGGDSLEDQFADM 206
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
NPDIIIATPGR +H E+E + L +V YVVFDEAD LF MGFA QL +IL L NR
Sbjct: 207 NSNPDIIIATPGRFLHLKVEME-LDLSTVRYVVFDEADRLFEMGFAAQLTEILHALPPNR 265
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSATLP +L EFA+AGL++P LVRLD ++K+SPDL+ AFFT++ +K ALL++++
Sbjct: 266 QTLLFSATLPKSLVEFARAGLQEPKLVRLDAESKVSPDLESAFFTVKSADKEGALLHILQ 325
Query: 261 EHIS-------------------------------------SDQQTLIFVSTKHHVEFLN 283
+ I ++ T+IF +TKHHVEFL
Sbjct: 326 DIIKMPVGETEAAIKAKQKKIDSKSKKRKRDSDAPSATDSPTEHSTIIFAATKHHVEFLA 385
Query: 284 VLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDF 343
L R G S YG +DQ ARK+ V FR + L+VTDVAARGIDIP+L NVIN+DF
Sbjct: 386 ALLRSAGYSVSYVYGSLDQTARKMQVHAFRTGMSNILVVTDVAARGIDIPILANVINFDF 445
Query: 344 PPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMD 403
P +PKIF+HRVGR ARAG+ G A+S V D+ YLLDL LFLS+ + VL D
Sbjct: 446 PAQPKIFIHRVGRTARAGKKGWAYSLVRDSDLPYLLDLQLFLSRKL--------VLGRTD 497
Query: 404 GVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTK 463
G D + AN + + G F + + + V +++D DL++L+ + +LY +T+
Sbjct: 498 G-----DFSFAN-DVVVGGFVRDKLARACEWVNKLLDDDEDLSNLRIVASKGEKLYMRTR 551
Query: 464 PLPSKESIRRGKDLPR----EGLHPMFKNVLEGGELMALAFSERLKAFRPKQTILE--AE 517
S ES +R K++ L +F + ++ E+ R+ FRP++T+ E
Sbjct: 552 NSASSESAKRAKEISTTEAFSELSMLFNDDVDKVEVEREKMLARISGFRPQETVFEIGKR 611
Query: 518 GEAARSKHLQGPSSQWVDVMKK-----KRAVHEKII------NLVHQQRSSKSMEKEVEP 566
G A + + + VD ++ K+A +E+ I Q + E +V+
Sbjct: 612 GTADEAAEMMRKRREKVDPRRRQQTEGKQAFNERSIADLTSNTAAVQDDDDEFDEMDVDV 671
Query: 567 EADSLMAKEIK----ETHGSKRKAKTFKDEEYFISSVPTNHHM--EAGLSVRS----DQG 616
DS E++ ET +K ++++D E+F+S P ++ G V S +QG
Sbjct: 672 NMDSASEDELEITFPETQANKASKESWQDPEHFMSYTPKTLNLAENRGYGVHSGSYDNQG 731
Query: 617 FGLNRLE---AAVLDLVADDSGGLQK--QKQVYHWDKRGKKYIKLNNGERVSASGKVVKT 671
N +E A +DL D+S G + + + WDK+ KKY+ N E S K V+
Sbjct: 732 RSGNFVEEARGAAMDLNQDESKGFAEAHKSRGMRWDKKSKKYVARANDEDGSKGAKFVRG 791
Query: 672 ESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNAEETTSVPGGRHLGGNNRKFRGGK 730
ESG K+ A+ K+G ++ WK +++K L A G E +++V H G N R+F+
Sbjct: 792 ESGQKIAASFKSGRFEAWK-KTNKIGRLPRA---GETETSSNVS---H-GANGRRFK--- 840
Query: 731 NQQRSVPNAHVCSEIKDLDQVRKER-----QKKADRIAFMKGKTQ 770
+ V + +D VRK+R +K+ R A GK +
Sbjct: 841 --HKMVKAPKEADKFRDDYHVRKKRVEEAKEKRIGRFANGGGKNE 883
>gi|330812848|ref|XP_003291329.1| hypothetical protein DICPUDRAFT_155915 [Dictyostelium purpureum]
gi|325078509|gb|EGC32157.1| hypothetical protein DICPUDRAFT_155915 [Dictyostelium purpureum]
Length = 1031
Score = 527 bits (1357), Expect = e-146, Method: Compositional matrix adjust.
Identities = 322/820 (39%), Positives = 463/820 (56%), Gaps = 101/820 (12%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+S+ L+ + R+I +KG+ VPTPIQR+T+PLIL G DVV MARTGSGKT AF++PM+Q
Sbjct: 221 FQSMGLNKLLLRSILKKGFNVPTPIQRRTIPLILEGNDVVGMARTGSGKTGAFVIPMVQM 280
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L +H GVR++ILSPTR+LA+QT K K+ + T+LR L+VGGDSME Q+++LA+NP
Sbjct: 281 LQEHSTVVGVRSVILSPTRELAIQTFKVVKDFTQGTNLRTILIVGGDSMEEQYDDLARNP 340
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
DIIIATPGRLMHHL E MSL V+Y+VFDEAD LF MGF EQL +IL +LSENRQTLL
Sbjct: 341 DIIIATPGRLMHHLQET-GMSLSKVKYIVFDEADRLFEMGFNEQLTEILSKLSENRQTLL 399
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSATLPS L EF +AGL +P LVRLD DTKIS +L L+FFT+R +EK LLY++++ I
Sbjct: 400 FSATLPSLLVEFVRAGLNNPKLVRLDTDTKISENLALSFFTVRHDEKLGVLLYLLKDIIF 459
Query: 265 SDQQ----TLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
+D+ T+IF +TK+HVEF+++L G+ + +G +D ARKI++++FR + L
Sbjct: 460 ADRTKKSPTIIFTATKYHVEFIHILLERTGITSTYIHGYLDPVARKINLAKFRTNQVSIL 519
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLD 380
IVTD+AARGIDIPLLDNVIN+DFPPK KIFVHRVGR ARAG+ G A+S V+ +++ Y++D
Sbjct: 520 IVTDLAARGIDIPLLDNVINFDFPPKEKIFVHRVGRVARAGKKGIAYSLVSPDEVPYMID 579
Query: 381 LHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGE-TIYGRFPQTVIDLVSDRVREII 439
LHL+L + + +G Q + + + + YG PQ +ID ++ V
Sbjct: 580 LHLYLGRKFLNK-------FEFEG------QTVEDPKYSFYGTIPQYLIDAETEYVNIQK 626
Query: 440 DSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVLEGGELMALA 499
+L SL RT NA + Y +P S ES R K L + G HP+ + + + +
Sbjct: 627 KECVELLSLTRTIENAHKKYISMRPGASHESNNRAKALNKTGFHPILSGKISDNDNIKMD 686
Query: 500 FSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKII----------- 548
F ++LK+FRP QT+LE + AR + Q V VMK+KR +H I
Sbjct: 687 FIQQLKSFRPPQTVLEMD---ARKNNTQ------VAVMKEKRKMHNVAIESQQKKVLLET 737
Query: 549 ----------NLVHQQRSSKSMEKEVEPEADSLMAKEIKETHGSKR-------------- 584
+ ++ SK + + + + ++ E K H K+
Sbjct: 738 SETNLGPDNQEFDYNKKHSKRKDIDGDDITEDMLKNENKINHNVKKPIQEEDEEEDEMDQ 797
Query: 585 --------KAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGL-----NRLEAAVLDL-- 629
EE ++ PTN + S R D F + N E L +
Sbjct: 798 EEDEDDNNNKYNVNIEESVTTNKPTNSKKKTRSSSR-DLNFFISNTPENLHEERALSITN 856
Query: 630 -------VADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKATKT 682
V + G +KQK+ WDKR K++ + + + K+V+ E+G V+A K
Sbjct: 857 RFTKDVEVNLNPDGERKQKKSMVWDKRKGKFVSSSAEQDRKNAKKLVRNEAGVLVEAKKN 916
Query: 683 GI-YKKWKERSHKKVYLKGASNEGNAEETTSVPGGRHLGGNNRKFRGGKNQQRSVPNAHV 741
Y++WK+++ ++ G E P + K+RG Q+
Sbjct: 917 HKGYEEWKKKTRSRI-----QKVGEDENEKYQPHKKDFVP--MKWRGQDKQK-------T 962
Query: 742 CSEIKDLDQVRKERQKKADRIAFMKGKTQKGKKFSKNGKR 781
E + D+ + R + D+ + M+G+ +K +K N R
Sbjct: 963 KQESEKNDKKKPFRDEIKDKRSIMRGRDEKERKMKVNKSR 1002
>gi|312084924|ref|XP_003144474.1| DEAD/DEAH box helicase [Loa loa]
gi|307760364|gb|EFO19598.1| DEAD/DEAH box helicase [Loa loa]
Length = 783
Score = 527 bits (1357), Expect = e-146, Method: Compositional matrix adjust.
Identities = 309/808 (38%), Positives = 474/808 (58%), Gaps = 85/808 (10%)
Query: 15 KQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKT 74
+ +K+ ++GG++++ L +F+ I++KG++ PTPIQRK +PLI+ G D+VAM+RTGSGKT
Sbjct: 23 QNRKQRQAGGWQAIGLDHTLFKGIQKKGFRQPTPIQRKAIPLIIDGKDIVAMSRTGSGKT 82
Query: 75 AAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSME 134
AAF++P+LQ+L G+RALI+ PTR+LA+QT KELGR+T LR ++LVGGD +E
Sbjct: 83 AAFVIPILQKLKVR-DMKGIRALIIEPTRELAIQTFIVVKELGRFTGLRCAVLVGGDRIE 141
Query: 135 SQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILG 194
QF+ + + PDI++ATPGRL+H + E+ D L +V+ +VFDEAD LF MGFAEQLH++L
Sbjct: 142 EQFQAVHEKPDIVVATPGRLLHVIVEM-DFRLSAVQIIVFDEADRLFEMGFAEQLHEVLK 200
Query: 195 QLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAA 254
++ ENRQTLLFSATLP+++ F+KAGL DP LVRLD+ KIS L + F R ++K AA
Sbjct: 201 RIPENRQTLLFSATLPNSIIAFSKAGLSDPVLVRLDLAEKISDKLSMVFLYCRSDDKLAA 260
Query: 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRA 314
+++ RE ++ ++QT++F +T HVE+L + + G++ V Y +D AR I++ +FR
Sbjct: 261 FIHLAREVVAGNEQTVVFCATMKHVEYLAAVAEKAGIDCVVLYSQLDCVARNINIQKFRK 320
Query: 315 RKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
++ LIVTD+AARG+DIPLLD IN+ FPPKPK+FVHRVGR ARAGR G A S +++
Sbjct: 321 KECSLLIVTDIAARGVDIPLLDVAINYHFPPKPKLFVHRVGRVARAGRFGKAISLFGADE 380
Query: 375 MAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDR 434
+ Y++DL LFLS+P++ A ++ + ET+ G FP +ID D
Sbjct: 381 VPYVVDLFLFLSRPLKFATTD----------------SANKDETLIGIFPDDIIDREVDF 424
Query: 435 VREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK-----DLPREGLHPMFKNV 489
++ + D+S +L+ L + NA + Y KT+P PS ES+RR K L + +HP +
Sbjct: 425 LKNVHDNSDELDDLLKKSENAMQKYKKTRPQPSAESVRRAKGEIKATLFKAAVHPFLQQE 484
Query: 490 LEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIIN 549
E++ + L F+ TI E + G + VMK+KR H+ N
Sbjct: 485 -SPEEIVRQSLLRHLHNFKSTTTIFEIQS---------GSKTLSAAVMKEKRKAHQ---N 531
Query: 550 LVHQQRSSKSMEKEVEPE----------------------------ADSLMAKEIKETHG 581
+H + S +PE ++L+ K KE
Sbjct: 532 YIHSKTDSDKCSDLDQPEITNSTYEPSEDVLKNTFQTVIKSTKFSAVNALIQKPYKE--- 588
Query: 582 SKRKAKTFKDE--EYFISSVPTNHHMEAGLSVRSDQGFGLNRL-EAAVLDLVADDSGGLQ 638
KRKA +E ++FI+ P + E GL+V D N L +A+ ++++ADD GL
Sbjct: 589 RKRKADELLEEKRKHFIAYAPAEANAERGLAVDRD----FNTLAKASTIEILADDEVGLY 644
Query: 639 KQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVY 697
KQ++ WD++ KK++ G+ S K ++TE G + AT K+G Y++W+++ +K+
Sbjct: 645 KQEKRKKWDRKLKKFV----GDNGDDSKKKIRTEDGTYLPATYKSGRYERWQKK--QKLE 698
Query: 698 LKGASNEGNAEETTSVPGGRHLGGNNRKFRGGKNQQRSVPNAHVCSEIKDLDQVRKERQK 757
+ +E + R GN + R G+N+ S SE+K +Q+ K+R K
Sbjct: 699 YQNNDDEETIDARIKQHDFRRRSGNRK--RKGRNKTGSKELKAPRSELKTSEQILKQRNK 756
Query: 758 KADRIAFMKGKTQKGKKFSKNGKRGKPR 785
KA ++ + Q+ K + G GK R
Sbjct: 757 KARIQSYQAYRRQQNLK--RKGWTGKGR 782
>gi|66800711|ref|XP_629281.1| hypothetical protein DDB_G0292992 [Dictyostelium discoideum AX4]
gi|74996456|sp|Q54CD8.1|DDX54_DICDI RecName: Full=ATP-dependent RNA helicase ddx54; AltName:
Full=ATP-dependent RNA helicase helA; AltName: Full=DEAD
box protein 54
gi|60462646|gb|EAL60848.1| hypothetical protein DDB_G0292992 [Dictyostelium discoideum AX4]
Length = 1091
Score = 527 bits (1357), Expect = e-146, Method: Compositional matrix adjust.
Identities = 276/581 (47%), Positives = 375/581 (64%), Gaps = 61/581 (10%)
Query: 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPML 82
GGF+S++L+ N+ +AI +KG+ VPTPIQRK++P+IL G D+V MARTGSGKT AF++PM+
Sbjct: 230 GGFQSMDLTKNLLKAILKKGFNVPTPIQRKSIPMILDGHDIVGMARTGSGKTGAFVIPMI 289
Query: 83 QRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
Q+L H GVRA+ILSPTR+LA+QT K K+ + T LR L+VGGDSME QF +LA+
Sbjct: 290 QKLGDHSTTVGVRAVILSPTRELAIQTFKVVKDFSQGTQLRTILIVGGDSMEDQFTDLAR 349
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
NPDIIIATPGRLMHHL E MSL V+Y+VFDEAD LF MGF EQL +IL +LSENRQT
Sbjct: 350 NPDIIIATPGRLMHHLLET-GMSLSKVQYIVFDEADRLFEMGFNEQLTEILSKLSENRQT 408
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
LLFSATLPS L +F +AGL +P L+ LD DTKIS +L L+FFTLR EEK LL+++++
Sbjct: 409 LLFSATLPSLLVDFVRAGLNNPKLINLDTDTKISENLSLSFFTLRHEEKLGVLLFLLKDI 468
Query: 263 I-------------------SSDQQ------TLIFVSTKHHVEFLNVLFREEGLEPSVCY 297
I S+QQ T+IFVSTK+HVEF+++L G+ + +
Sbjct: 469 IYKKPQLPTTETTTTTTTNNESNQQQQKKSSTIIFVSTKYHVEFIHILLERAGIASTYIH 528
Query: 298 GDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRA 357
G +D ARKI++++FR+ + ++VTD+AARGIDIPLLDNVIN+DFPPK KIF+HRVGR
Sbjct: 529 GYLDPVARKINLAKFRSHQVGVMVVTDLAARGIDIPLLDNVINFDFPPKEKIFIHRVGRV 588
Query: 358 ARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGE 417
ARAGR+G A+S V+ +++ Y++DLHL+L + +++ G+
Sbjct: 589 ARAGRSGIAYSLVSPDEVPYMIDLHLYLGRKF-------------------LNKFQYEGQ 629
Query: 418 TI-------YGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKES 470
TI YG PQT+ID ++ V +L SL +T NA + Y T+P S ES
Sbjct: 630 TINDPKYSFYGTIPQTIIDRETEFVNVQRKECIELLSLTKTIHNAHKKYLSTRPGASHES 689
Query: 471 IRRGKDLPREGLHPMFKNVLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPS 530
RR K + + HPM + L + + F + LK+FRP QT+LE + AR ++Q
Sbjct: 690 NRRAKLMDKSKYHPMLSDHLNSNDQIRNDFIQSLKSFRPPQTVLELD---ARKNNVQ--- 743
Query: 531 SQWVDVMKKKRAVHEKIINLVHQQRSSKSMEKEVEPEADSL 571
V +MK KR VH +I ++ + E + PE +
Sbjct: 744 ---VSIMKDKRKVHTNVIESQQKKLYLQQSETNLGPENEEF 781
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 83/184 (45%), Gaps = 16/184 (8%)
Query: 591 DEEYFISSVPTNHHMEAGLSVRSDQGFGLNRL-EAAVLDLVADDSGGLQKQKQVYHWDKR 649
D +FIS+ P N E +S+ NR + ++LVAD +KQK+ WDKR
Sbjct: 885 DPNFFISATPENLIQERAMSIS-------NRFTKDDEVNLVADTD---RKQKKSMVWDKR 934
Query: 650 GKKYIKLNNGERVSASGKVVKTESGAKVKATKTGI-YKKWKERSHKKVYLKGASNEGNAE 708
K++ S K+V+ E+G V+A K+ Y++WK+++H ++ G +
Sbjct: 935 KGKFVSSQADADRKNSKKLVRNEAGKLVEAKKSHKGYEEWKKKTHGRIQRVGEDENSKYQ 994
Query: 709 ETTSVPGGRHLGGNNRKFRGGKNQQRSVPNAHVC----SEIKDLDQVRKERQKKADRIAF 764
+ G R+ N+ +H SE+KD +Q+ K R +K ++
Sbjct: 995 PNQKEYLPQKWRGQGREKEKKDNKASHAKGSHGLKGRPSELKDKNQISKNRSEKERKMRV 1054
Query: 765 MKGK 768
K K
Sbjct: 1055 NKTK 1058
>gi|242015175|ref|XP_002428249.1| ATP-dependent RNA helicase DDX54, putative [Pediculus humanus
corporis]
gi|212512810|gb|EEB15511.1| ATP-dependent RNA helicase DDX54, putative [Pediculus humanus
corporis]
Length = 723
Score = 526 bits (1354), Expect = e-146, Method: Compositional matrix adjust.
Identities = 312/699 (44%), Positives = 430/699 (61%), Gaps = 56/699 (8%)
Query: 18 KKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77
KK GGF++ S V + I+++GYK+PTPIQRK++PLIL G DVVAMARTGSGKTA F
Sbjct: 22 KKKNGGGFQAFGFSFPVLKGIQKRGYKIPTPIQRKSIPLILQGRDVVAMARTGSGKTACF 81
Query: 78 LVPMLQRLNQHVPQG--GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMES 135
L+PM ++L P+ GVRALILSPTR+LALQT+KF KELG++T L+ ++GGDSM+
Sbjct: 82 LLPMFEKLINKTPKSRLGVRALILSPTRELALQTVKFIKELGKFTKLKALAILGGDSMDQ 141
Query: 136 QFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQ 195
QF + +NPDII+ATPGR +H E+E + L SVEYVVFDEAD LF MGF EQL +IL +
Sbjct: 142 QFGAIHENPDIIVATPGRFLHICVEME-LKLTSVEYVVFDEADRLFEMGFGEQLKEILDR 200
Query: 196 LSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAAL 255
L +RQT+LFSATLP L +FAKAGL +P L+RLDV+TKI L L +F+++ +EK AAL
Sbjct: 201 LGVSRQTVLFSATLPKLLVDFAKAGLVNPVLLRLDVETKIPEMLDLVYFSVKHDEKLAAL 260
Query: 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRAR 315
L + + + QTLIFV+TKHHVE+++ + + + S Y D+D ARKI+ ++F+ +
Sbjct: 261 L-CLLNLLPKNTQTLIFVATKHHVEYIHKILEKANISSSYIYSDLDPTARKINAAKFQNK 319
Query: 316 KTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDM 375
LIVTDVAARG+DIP LD VIN+ FP KPK+FVHRVGR ARAGRTGTAFS V SE+
Sbjct: 320 VCSVLIVTDVAARGVDIPQLDYVINYHFPAKPKLFVHRVGRCARAGRTGTAFSLVCSEEF 379
Query: 376 AYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRV 435
Y++DLHLFL K I LLD SK+ + N + G+ P VI+ +
Sbjct: 380 PYIIDLHLFLGKKIN--------LLDK---TSKLTTS-CNAKEALGKIPSDVIESQQSEL 427
Query: 436 REIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK--DLPREGLHPMFKNVLEGG 493
+ ++++L++ C N ++ Y K++P S ES++R K DL +HP F++ G
Sbjct: 428 ISWHHNDEEISNLEKVCDNGYKKYLKSRPGASIESLKRAKELDLYNVEVHPFFRDHFNGE 487
Query: 494 ELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQ 553
E L ++K +RPK TI E +L S + VMK + H K I +
Sbjct: 488 E-NNLELVGKIKKYRPKGTIFEL--------NLSNKSKCYT-VMKNMKKFHAKNIINYKK 537
Query: 554 QRSSKSM----------------EKEVEPEADSLMA--KEIKETHGSKRKAKTFKDEEYF 595
++ ++ + E E E D ++ K+ K H + RK + F DEEY+
Sbjct: 538 KKETEKLNEEEEDENFDDNDNLKENREESEDDDFVSAVKKKKNNHLNVRKKRKFVDEEYY 597
Query: 596 ISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIK 655
+ ++ + E GLSV S N DL D+ L+ QK++ WDK+ KK +
Sbjct: 598 VPHFASDQYTEKGLSVNS----FTNEANKLAFDLTGDNENELKSQKRMKIWDKKRKKMV- 652
Query: 656 LNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSH 693
G GK +KTESG + A+ K+ Y+KWKERS+
Sbjct: 653 ---GVADQKVGK-IKTESGNWISASYKSNRYEKWKERSN 687
>gi|444723055|gb|ELW63720.1| ATP-dependent RNA helicase DDX54 [Tupaia chinensis]
Length = 937
Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust.
Identities = 316/760 (41%), Positives = 437/760 (57%), Gaps = 124/760 (16%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
R + KKK KSGGF+S+ LS VF+ I +KGYKVPTPIQRKT+P+IL G DVVAMARTGSG
Sbjct: 86 RAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSG 145
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTA FL+PM +RL Q G RALILSPTR+LALQTLKFTKELG++T L+ +L++GGD
Sbjct: 146 KTACFLLPMFERLKTRSAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDK 205
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
ME QF L +NPDIIIATPGRL+H E+ ++ L+SVEYVVFDEAD LF MGFAEQL +I
Sbjct: 206 MEDQFAALHENPDIIIATPGRLVHVAVEM-NLKLQSVEYVVFDEADRLFEMGFAEQLQEI 264
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
L +L QT+LFSATLP L EFA+AGL +P L+RLDVD+K++ LK +FF +R++ K
Sbjct: 265 LSRLPGGHQTVLFSATLPKMLVEFARAGLTEPVLIRLDVDSKLNEQLKTSFFLVREDTKA 324
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
A LLY++R + QT++FV+TKHH E+L+ L + + + Y +DQ ARKI++++F
Sbjct: 325 AVLLYLLRSVVRPQDQTVVFVATKHHAEYLSELLTSQRVSCAHIYSALDQTARKINLAKF 384
Query: 313 R-------------------------------ARKTMF-------------------LIV 322
A+ +F LIV
Sbjct: 385 AHGKCSALIVTDLAARGLDIPLLDNVINYSFPAKSKLFLHRVEQESHAKFAHGKCSALIV 444
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
TD+AARG+DIPLLDNVIN+ FP K K+F+HRVGR ARAGR+GTA+S V +++ YLLDLH
Sbjct: 445 TDLAARGLDIPLLDNVINYSFPAKSKLFLHRVGRVARAGRSGTAYSLVAPDELPYLLDLH 504
Query: 383 LFLSKPI--------------RA----------APSEEEVLLDMDGVMSKI--------- 409
LFL + + RA AP E LLD+ + +
Sbjct: 505 LFLGRSLSLARPHEEPSGRVARAGRSGTAYSLVAPDELPYLLDLHLFLGRSLSLARPHEE 564
Query: 410 DQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKE 469
+ + GR PQ+V+D ++ +++S +L L R NA + Y +++P PS E
Sbjct: 565 PSGAVTADGVLGRVPQSVVDDEDSSLQNTLEASMELRGLGRVADNAQQQYMRSRPAPSPE 624
Query: 470 SIRRGK--DLPREGLHPMFKNVLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQ 527
SI+R K DL GLHP+F + E EL L + ++ + + TI E + S+ L
Sbjct: 625 SIKRAKELDLAGLGLHPLFSSRFEEKELQRLRLVDGIRNYHSRATIFEIN---SSSRDL- 680
Query: 528 GPSSQWVDVMKKKRAVHEKIINLVHQQRSSKS-------MEKEVEPEADSLMAKE-IKET 579
SSQ VM+ KR H K I Q R + + +V E + +AKE I+E
Sbjct: 681 --SSQ---VMRAKRQKHHKAIASFQQGRQGRPGAPAGPVLSCQVLQEGEPEVAKEDIEEN 735
Query: 580 -------------------HGSKRKAKTF--KDEEYFISSVPTNHHMEAGLSVRSDQGFG 618
G+KR+ + +D+++F+ P + E GLSV +D G
Sbjct: 736 VEDVFAEVVGQKRRRPGPDRGAKRRREEARQRDQDFFVPYRPKDFDSERGLSVGADLGAF 795
Query: 619 LNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNN 658
+ AVLDL+ D++ L + +Q ++ K+ K+++
Sbjct: 796 EQQAAGAVLDLMGDEAQNLTRGRQQLKCYQKWKQKQKIDD 835
>gi|307193157|gb|EFN76062.1| ATP-dependent RNA helicase DDX54 [Harpegnathos saltator]
Length = 772
Score = 520 bits (1338), Expect = e-144, Method: Compositional matrix adjust.
Identities = 322/788 (40%), Positives = 471/788 (59%), Gaps = 87/788 (11%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+S+ L+ V + I ++GYK+PTPIQRKT+PL L G D+VAMARTGSGKTA FL+P+ ++
Sbjct: 37 FQSMALTFPVLKGILKRGYKIPTPIQRKTIPLALEGRDIVAMARTGSGKTACFLIPLFEK 96
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L + + G RALILSPTR+LALQTLKF KELG++T L+ ++++GGDS++ QF + NP
Sbjct: 97 LKTRLAKTGARALILSPTRELALQTLKFIKELGKFTGLKAAVILGGDSIDDQFSAIHGNP 156
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
DII+ATPGR +H E+ D+ LK+VEYVVFDEAD LF MGF EQ+H+I+ +L E+RQTLL
Sbjct: 157 DIIVATPGRFLHICVEM-DLQLKNVEYVVFDEADRLFEMGFGEQIHEIVNRLPESRQTLL 215
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSATLP L +FAKAGL DP L+RLDV++K+ L+L+F T R EEK A LL +++ I
Sbjct: 216 FSATLPKVLVDFAKAGLSDPVLLRLDVESKLPEGLELSFITCRPEEKLAVLLCLLKRVIK 275
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
D Q +IF T HHVE+++ + + + + Y ++D ARKI+ ++F+ K LIVTD
Sbjct: 276 EDSQIIIFAETMHHVEYIHQILDKAKIINTFIYSNLDPSARKINTAKFQTGKAKVLIVTD 335
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
VAARGIDIP LD VIN++FP K K+FVHRVGR ARAGR GTA++ V+ ++ YLLDLHLF
Sbjct: 336 VAARGIDIPHLDCVINFNFPAKSKLFVHRVGRCARAGRAGTAYNIVSVDEYPYLLDLHLF 395
Query: 385 LSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREII---DS 441
L +P+ P+ + N E+ G+ PQT+I+ + + E+I ++
Sbjct: 396 LGRPLLIVPAT---------------GSTENMESAVGKMPQTMIE---EELAELINWHNN 437
Query: 442 SADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDL--PREGLHPMFKNVLEGGELMALA 499
S DL ++Q+ C NA++ Y +++P S ES++R K+L G+ P + + G A+
Sbjct: 438 STDLTNMQKVCNNAYQQYVRSRPGASTESVKRVKELRINAAGVLPQYSD----GSSTAMD 493
Query: 500 FSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVD--VMKKKRAVH-EKIINL---VHQ 553
R+K +RP+ TI E G + +D VMK KRA H E I+N + +
Sbjct: 494 LISRMKNYRPQGTIFEI-----------GTKTSSIDYQVMKTKRAFHKENILNFHKKIEK 542
Query: 554 QRSSK-SMEKEVEPEAD--SLMAKEIKETHGS-----------------KRKAKTFKDEE 593
+ + K E E+ + D S ++I + KRK +T +DEE
Sbjct: 543 READKIDTESELSQKVDLPSSNTEDINSAFNTVVVPKKRSGDNLYKISKKRKRQTKRDEE 602
Query: 594 YFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKY 653
++I + H E GL+V + F + A +DL D+ Q Q+ WD++ KK
Sbjct: 603 FYIPYSAPDKHTEDGLAVNT---FS-TEADKAQMDLTVDNEQSRHLQTQLKKWDRKKKKM 658
Query: 654 IKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNAEETTS 712
I ++ + +GK ++TESG + A+ KT Y WKE+S + + ++ +
Sbjct: 659 ITIDKNPK---AGK-IRTESGVWIPASYKTNRYNMWKEKSKIEEANEDEEESAEMKKLRT 714
Query: 713 VPGGRHLGGNNRKFRGGKNQQRSVPNAHVCSEIKDLDQVRKERQKKADRIAFMKGKTQKG 772
P H +N+K KN+ R+ E+K +Q+ K R K +R G+ KG
Sbjct: 715 TPHT-HWARHNQKL---KNKMRAK------DELKRPEQILKAR-KLLERKRRKNGR--KG 761
Query: 773 KKFSKNGK 780
+K SK+GK
Sbjct: 762 RKGSKHGK 769
>gi|70992295|ref|XP_750996.1| ATP dependent RNA helicase (Dbp10) [Aspergillus fumigatus Af293]
gi|74697392|sp|Q8NJM2.1|DBP10_ASPFU RecName: Full=ATP-dependent RNA helicase dbp10
gi|21627815|emb|CAD37147.1| putative ATP-dependent RNA helicase [Aspergillus fumigatus]
gi|66848629|gb|EAL88958.1| ATP dependent RNA helicase (Dbp10), putative [Aspergillus fumigatus
Af293]
gi|159124566|gb|EDP49684.1| ATP dependent RNA helicase (Dbp10), putative [Aspergillus fumigatus
A1163]
Length = 869
Score = 520 bits (1338), Expect = e-144, Method: Compositional matrix adjust.
Identities = 302/728 (41%), Positives = 412/728 (56%), Gaps = 77/728 (10%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+++ LS N+ +AI RKG+ VPTPIQRKT+P+I+ DVV MARTGSGKTAAF++P
Sbjct: 68 KGGGFQAMGLSANLLKAIARKGFSVPTPIQRKTIPVIMDDQDVVGMARTGSGKTAAFVIP 127
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M+++L H + G R L+LSP+R+LALQTLK KELGR TDL+ LLVGGDS+E QF +
Sbjct: 128 MIEKLKSHSTKVGARGLVLSPSRELALQTLKVVKELGRGTDLKSVLLVGGDSLEEQFAMI 187
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
A NPDIIIATPGR +H E+ ++ L S+ YVVFDEAD LF MGFA QL +IL L NR
Sbjct: 188 AGNPDIIIATPGRFLHLKVEM-NLDLSSIRYVVFDEADRLFEMGFAAQLTEILHGLPANR 246
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSATLP +L EFA+AGL++P LVRLD ++KISPDL+ AFF+++ EK ALLY++
Sbjct: 247 QTLLFSATLPKSLVEFARAGLQEPTLVRLDTESKISPDLQNAFFSVKSSEKEGALLYILH 306
Query: 261 EHIS------------------------------------------SDQQTLIFVSTKHH 278
E I + T++F +TKHH
Sbjct: 307 EVIKMPTGPTEVSQQRKEEDASAKNLKNKKRKRAEMEKAVNTRESPTKHSTIVFAATKHH 366
Query: 279 VEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNV 338
V++L L E G S YG +DQ ARKI V FR T L+VTDVAARGIDIP+L NV
Sbjct: 367 VDYLYSLLCEAGFAVSYVYGSLDQTARKIQVQNFRTGMTNILVVTDVAARGIDIPILANV 426
Query: 339 INWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEV 398
IN+DFP +PKIFVHRVGR ARAGR G ++S V D YLLDL LFL + + V
Sbjct: 427 INYDFPSQPKIFVHRVGRTARAGRKGWSYSLVRDADAPYLLDLQLFLGRRL--------V 478
Query: 399 LLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRL 458
+ G DQ + + G P+ + + V +++D +ADL + + +L
Sbjct: 479 VGREFG-----DQVNFAEDVVTGSLPRDGLSQSCEWVTKVLDDNADLAAQRTVAAKGEKL 533
Query: 459 YSKTKPLPSKESIRRGKDLPRE----GLHPMFKNVLEGGELMALAFSERLKAFRPKQTIL 514
Y +T+ S ES +R K + +HP+F++ E R+ +RP +TI
Sbjct: 534 YMRTRNAASLESAKRSKQVVSSDNWTSVHPLFQDETSNLEAEREKMLARIGGYRPPETIF 593
Query: 515 EAEGEAARSKHLQGPSSQWVDVMK--------KKRAVHEKIINLVHQQRSSKSMEKEVEP 566
E KH + +D +K KK+ ++ ++ + SM + E
Sbjct: 594 EVNNRRM-GKH---ENVDALDTIKRVRSTLESKKKPFSDEDDDVPTGVADNMSMASDSEL 649
Query: 567 EADSLMAKEIKETHGSKRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEA-- 624
E + K+ K A +F++ EYF+S P N + + G N +A
Sbjct: 650 EVTFSSYSKSKDNKAKKASAASFQNPEYFMSYTPNNTSLAEDRAYGVHSGTNSNFAQASR 709
Query: 625 -AVLDLVADDSG-GLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-K 681
A +DL DD G G + + + WDKR KKY+ N E S ++V+ ESGAK+ A+ +
Sbjct: 710 SATMDLAGDDGGRGFGEARTLMRWDKRHKKYVARQNDEDGSKGTRLVRGESGAKIAASFR 769
Query: 682 TGIYKKWK 689
+G + WK
Sbjct: 770 SGRFDAWK 777
>gi|326473025|gb|EGD97034.1| ATP-dependent RNA helicase DBP10 [Trichophyton tonsurans CBS
112818]
Length = 941
Score = 517 bits (1331), Expect = e-143, Method: Compositional matrix adjust.
Identities = 325/882 (36%), Positives = 482/882 (54%), Gaps = 155/882 (17%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+++ L+PN+ +AI RKG+ VPTPIQRKT+PL+L DVV MARTGSGKTAAF++P
Sbjct: 91 KGGGFQAMGLNPNLLKAITRKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVIP 150
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M+++L H + G R LILSP+R+LALQTLK KELGR TDL+ LLVGGDS+E QF +
Sbjct: 151 MIEKLRNHSTKVGARGLILSPSRELALQTLKVVKELGRGTDLKCVLLVGGDSLEEQFGYM 210
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
A NPDIIIATPGR +H E+ ++ L S+ Y VFDEAD LF MGFA QL +IL L +R
Sbjct: 211 ASNPDIIIATPGRFLHLKVEM-NLDLSSIRYAVFDEADRLFEMGFAAQLTEILHALPTSR 269
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSATLP +L EFA+AGL++P L+RLD D+KISPDL+ AFFT++ +K ALL+++
Sbjct: 270 QTLLFSATLPKSLVEFARAGLQEPTLIRLDADSKISPDLQSAFFTVKSADKEGALLHILH 329
Query: 261 EHIS-----------------------------------------SDQQTLIFVSTKHHV 279
+ I ++ T++FV+TKHHV
Sbjct: 330 DIIKIPTGETEAGKLAKKEAQEGKQGTSKKRKRADMKGPGAHGTPTEHSTIVFVATKHHV 389
Query: 280 EFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI 339
E++ L R G S YG ++Q ARKI V FRA + L+VTDVAARGIDIP+L NVI
Sbjct: 390 EYIANLLRHSGFAVSYAYGSLNQTARKIQVQNFRAGISNILVVTDVAARGIDIPVLANVI 449
Query: 340 NWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVL 399
N+DFP +PKI++HRVGR ARAG+ G ++S V D YL+DL LFL + +
Sbjct: 450 NYDFPSQPKIYIHRVGRTARAGQKGWSYSLVRDSDAPYLIDLQLFLGRQL---------- 499
Query: 400 LDMDGVMSKIDQAIAN--GETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFR 457
+M + AN + + G P+ ++ + V +++ D+ L+ +
Sbjct: 500 -----LMGRTATENANYAEDIVVGSLPRKSLESHCEYVDKLLSDDVDIEGLRSVSIRGEK 554
Query: 458 LYSKTKPLPSKESIRRGKDLPREG----LHPMFKNVLEGGELMALAFSERLKAFRPKQTI 513
LY +T+ S ES +R KD+ +HP+F + E+ R+ ++P++T+
Sbjct: 555 LYMRTRNSASAESAKRAKDIVAADAWVTIHPLFNDESSRLEVEREQMLARVGGYKPQETV 614
Query: 514 LEAEGEAARSKHLQGPSSQWVDVMKKKRAVHE--KIINLVHQQ----------------- 554
E G+ + + + + V+VM+K R+V E KI + Q
Sbjct: 615 FEVMGK----RGGKSGNEEAVEVMRKIRSVMERKKIRRELASQHSPLQNSKEGKVDDDAG 670
Query: 555 -----RSSKSMEKEVEPEADSLMAKE--IKETHGSKRKAK------------TFKDEEYF 595
+S ++ ++ + D +A+E ++ T +++K TF++ EYF
Sbjct: 671 ENLGDKSDDDIDASIQDDPDMSLAEESDLEVTFSYPKQSKSRSNVENGNQSNTFQNPEYF 730
Query: 596 ISSVPTNHHMEAGLSVRSDQGFGL--------NRLEA---AVLDLVADDSG-GLQKQKQV 643
+S PT+ +S+ D+G+G+ N +EA A +DL D+ GL +
Sbjct: 731 MSYTPTS------ISLTEDRGYGVHSGSNSNTNFVEASRSATMDLNGDEGARGLGGAGSI 784
Query: 644 YHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKE-RSHKKVYLKGA 701
WDKR KKY+ N E S K+V+ ESGAK+ A+ ++G + WK+ + ++ G
Sbjct: 785 KRWDKRHKKYVLRQNDEDGSKGEKLVRGESGAKIAASFRSGRFDSWKKGKRLGRMPRVGE 844
Query: 702 SNEGNAEETTSVPGGRHLGGNNR------KFRG--------GKNQQRSVPNA-------- 739
N T +PG ++ + K+RG G+ Q+ +A
Sbjct: 845 MENSNLGNTGGIPGRKYRHNKEQAPKAADKYRGDYEKMKKKGEAMQKRREDAGIPTYGGK 904
Query: 740 -HVCSEIKDLDQVRKERQKKADRIAFMKGKTQKGKKFSKNGK 780
+V SE+K+ + VRK R++ ++ + +K + SK GK
Sbjct: 905 KNVKSELKNSEDVRKARKQ-------LEKRKEKNARPSKKGK 939
>gi|328708487|ref|XP_003243704.1| PREDICTED: ATP-dependent RNA helicase DDX54-like [Acyrthosiphon
pisum]
Length = 777
Score = 516 bits (1330), Expect = e-143, Method: Compositional matrix adjust.
Identities = 318/814 (39%), Positives = 461/814 (56%), Gaps = 94/814 (11%)
Query: 8 AELKRREKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMA 67
A LK KQK +SGGF+++ LS V + + ++GYKVPTPIQRKT+P+ L DVVAMA
Sbjct: 13 ATLKPEVKQKTGKRSGGFQAMGLSFPVLKGVLKRGYKVPTPIQRKTIPIALENRDVVAMA 72
Query: 68 RTGSGKTAAFLVPMLQRLNQHVPQG--GVRALILSPTRDLALQTLKFTKELGRYTDLRIS 125
RTGSGKTA FL+PM ++L QH G G+RALILSPTR+LA+QTLKF KE+G++T+L+ +
Sbjct: 73 RTGSGKTACFLIPMFEKLTQHTVNGHRGIRALILSPTRELAVQTLKFLKEIGKFTNLKSA 132
Query: 126 LLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGF 185
+++GGD ME+QF + PDI++ATPGR +H E+ + L ++YVVFDEAD LF MGF
Sbjct: 133 VILGGDPMEAQFSTMHSAPDIVVATPGRFLHLCVEMS-LKLPYIQYVVFDEADRLFEMGF 191
Query: 186 AEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFT 245
EQL +I+ +L E RQTLLFSATLP L +FA+AGL DP L+RLDV++KI L L F
Sbjct: 192 GEQLTEIIARLPETRQTLLFSATLPKVLVQFARAGLSDPVLIRLDVESKIPDTLGLGFLN 251
Query: 246 LRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDAR 305
+R EE+ ALL +++ + D T+IF TKHHV+F+++L + + + Y D+D AR
Sbjct: 252 VRPEERDGALLCLLKYVVKPDSMTIIFAPTKHHVDFIHLLLDFQDIPNTFIYSDLDPTAR 311
Query: 306 KIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGT 365
KI+ S+F+ LI TD+AARGIDIP LD VIN+ FP K K+FVHRVGR ARAG+ G
Sbjct: 312 KINASKFQTGSVKTLITTDIAARGIDIPQLDTVINYTFPAKSKLFVHRVGRCARAGKVGQ 371
Query: 366 AFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQ 425
A+S VT ++M YLLDLHLFL +P + D DG ++G PQ
Sbjct: 372 AYSLVTRDEMCYLLDLHLFLGRPFSPVLETPKSDDDTDG--------------LFGIVPQ 417
Query: 426 TVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK--DLPREGLH 483
+++ ++ SS D+ + +TCTN ++ Y K++P S +S+RR K +L H
Sbjct: 418 LLLEEELGQLTSWYTSSIDVINSLKTCTNGYKNYIKSRPGASVDSVRRAKKINLSVIAEH 477
Query: 484 PMFKNVLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAV 543
PMF+ ++ ++ + F R+K FRP+ T+ E G S+ + +++ K
Sbjct: 478 PMFQKII-AADMGRIDFVSRIKNFRPETTVFE-----------MGQSTNSIPLLQMKLLR 525
Query: 544 HEKIINLVHQQRSSKSMEKEVE---------PEADSLMAKEIKETHGS------------ 582
+ ++++ R + + E P +D EI ET
Sbjct: 526 ERNMPSVINYHRKKREQLDDSEGVRLKKVDLPSSDQ---TEISETFNDIITQRPRVTGQK 582
Query: 583 -----KRKAKTFKDEEYFISSVPTNHHMEAGLSV---RSDQGFGLNRLEAAVLDLVADDS 634
K+ +T K E+FI P + + E GL+V +S +G +LDL+ D
Sbjct: 583 KRKNLKKTKQTVK-SEHFIPYQPADCYTEEGLAVDNLKSSEG---------ILDLMGDSE 632
Query: 635 GGLQKQK-QVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERS 692
L KQ WD KY+ + E+ K +K+ESG + T K+ Y+KW+E+S
Sbjct: 633 QSLAKQNSNKRKWDPVSHKYVTAQSLEKNQV--KKIKSESGHWIPITYKSDRYEKWQEKS 690
Query: 693 HKKVYLKGASNEGNAEETTS--VPGGR-----HLGGNNRKFRGGKNQQR-SVPNAHVCSE 744
LK ++ EGN EE P R G +N K R +++ R + H+ +
Sbjct: 691 K----LKNSAAEGNNEEDEKKIAPLFRFKLDTRWGRHNAKLREQQSESRLKLDTKHILKQ 746
Query: 745 IKDLDQVRKERQKKADRIAFMKGKT-QKGKKFSK 777
+++ R+KK R K K +K KF+K
Sbjct: 747 ----RIIKEHRRKKNGRKPVKKDKIRKKSAKFNK 776
>gi|119471856|ref|XP_001258230.1| dead box ATP-dependent rna helicase [Neosartorya fischeri NRRL 181]
gi|134034063|sp|A1DNG2.1|DBP10_NEOFI RecName: Full=ATP-dependent RNA helicase dbp10
gi|119406382|gb|EAW16333.1| dead box ATP-dependent rna helicase [Neosartorya fischeri NRRL 181]
Length = 934
Score = 516 bits (1329), Expect = e-143, Method: Compositional matrix adjust.
Identities = 303/755 (40%), Positives = 416/755 (55%), Gaps = 100/755 (13%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+++ LS N+ +AI RKG+ VPTPIQRKT+P+I+ DVV MARTGSGKTAAF++P
Sbjct: 88 KGGGFQAMGLSANLLKAIARKGFSVPTPIQRKTIPVIMDDQDVVGMARTGSGKTAAFVIP 147
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M+++L H + G R LILSP+R+LALQTLK KELGR TDL+ LLVGGDS+E QF +
Sbjct: 148 MIEKLKSHSTKVGARGLILSPSRELALQTLKVVKELGRGTDLKSVLLVGGDSLEEQFAMM 207
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
A NPDI+IATPGR +H E+ ++ L S+ YVVFDEAD LF MGFA QL +IL L NR
Sbjct: 208 AGNPDIVIATPGRFLHLKVEM-NLDLSSIRYVVFDEADRLFEMGFAAQLTEILHGLPANR 266
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSATLP +L EFA+AGL++P LVRLD ++KISPDL+ AFF+++ EK ALLY+++
Sbjct: 267 QTLLFSATLPKSLVEFARAGLQEPTLVRLDTESKISPDLQNAFFSVKSSEKEGALLYILQ 326
Query: 261 EHIS------------------------------------------SDQQTLIFVSTKHH 278
E I + T++F +TKHH
Sbjct: 327 EVIKMPTGPTEVSQQRKEEDASAKNWKNKKRKRAEMEKAVNMRESPTKHSTIVFAATKHH 386
Query: 279 VEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNV 338
V++L L E G S YG +DQ ARKI V FR T L+VTDVAARGIDIP+L NV
Sbjct: 387 VDYLYSLLSEAGFAVSYVYGSLDQTARKIQVQNFRTGMTNILVVTDVAARGIDIPILANV 446
Query: 339 INWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEV 398
IN+DFP +PKIF+HRVGR ARAGR G ++S V D YLLDL LFL + + V
Sbjct: 447 INYDFPSQPKIFIHRVGRTARAGRKGWSYSLVRDADAPYLLDLQLFLGRRL--------V 498
Query: 399 LLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRL 458
+ G DQ + + G P+ + + V +++D +ADL + + +L
Sbjct: 499 VGREFG-----DQVNFAEDVVTGSLPRDGLSQSCEWVTKVLDDNADLAAQRTVAAKGEKL 553
Query: 459 YSKTKPLPSKESIRRGKDLPRE----GLHPMFKNVLEGGELMALAFSERLKAFRPKQTIL 514
Y +T+ S ES +R K + +HP+F++ E R+ +RP +TI
Sbjct: 554 YMRTRNSASLESAKRSKQVVSSDNWTSIHPLFQDETSNLEAEREKMLARIGGYRPPETIF 613
Query: 515 EAEG----------------------EAARSKHLQGPSSQWV-DVMKKKRAVHEKIINLV 551
E E+ + + S+++ D ++A +E N
Sbjct: 614 EVNNRRMGKHENVDALDTIKRVRTTLESKKKRAQANEKSEFLEDASDDEKAANEAGENEN 673
Query: 552 HQQRSSK------------SMEKEVEPEADSLMAKEIKETHGSKRKAKTFKDEEYFISSV 599
S + SM + E E + KE K A +F++ EYF+S
Sbjct: 674 EGAFSDEDDDVPTGVADNMSMASDSELEVTFSSYSQSKENKAKKASAASFQNPEYFMSYT 733
Query: 600 PTNHHMEAGLSVRSDQGFGLNRLEA---AVLDLVADDSG-GLQKQKQVYHWDKRGKKYIK 655
P N+ + + G N +A A +DL DD G G + + + WDKR KKY+
Sbjct: 734 PNNNSLVEDRAYGVHSGTNSNFAQASRSATMDLAGDDGGRGFGEARTLMRWDKRHKKYVA 793
Query: 656 LNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWK 689
N E S ++V+ ESGAK+ A+ ++G + WK
Sbjct: 794 RQNDEDGSKGTRLVRGESGAKIAASFRSGRFDAWK 828
>gi|391865804|gb|EIT75083.1| ATP-dependent RNA helicase [Aspergillus oryzae 3.042]
Length = 928
Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust.
Identities = 304/753 (40%), Positives = 425/753 (56%), Gaps = 99/753 (13%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+++ L+ ++ +AI RKG+ VPTPIQRKT+P+I+ G DVV MARTGSGKTAAF++P
Sbjct: 87 KGGGFQAMGLNAHLLKAITRKGFSVPTPIQRKTIPVIMDGQDVVGMARTGSGKTAAFVIP 146
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M+++L H + G R LILSP+R+LALQTLK KELG+ TDL+ LLVGGDS+E QF +
Sbjct: 147 MIEKLKSHSTKVGARGLILSPSRELALQTLKVVKELGKGTDLKSVLLVGGDSLEEQFSLM 206
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
A NPDI+IATPGR +H E+ ++ L S+ YVVFDEAD LF MGFA+QL +IL L NR
Sbjct: 207 AGNPDIVIATPGRFLHLKVEM-NLDLSSIRYVVFDEADRLFEMGFADQLTEILYGLPANR 265
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSATLP +L EFA+AGL++P L+RLD ++KISPDL+ FF+++ EK ALL+++
Sbjct: 266 QTLLFSATLPKSLVEFARAGLQEPTLIRLDTESKISPDLENVFFSVKSSEKEGALLHILH 325
Query: 261 EHIS-----------------------------------------SDQQTLIFVSTKHHV 279
E I + T++F +TKHHV
Sbjct: 326 EVIKMPTGPTEAAQRQKEQGDGKNFKNFKKRKRGDDKAINFQESPTKYSTIVFAATKHHV 385
Query: 280 EFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI 339
++L L RE G S YG +DQ ARKI V FRA + L+VTDVAARGIDIP+L NVI
Sbjct: 386 DYLYSLLREAGFAVSYAYGSLDQTARKIQVQNFRAGLSNILVVTDVAARGIDIPILANVI 445
Query: 340 NWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVL 399
N+DFP +PKIFVHRVGR ARAGR G ++S V D Y+LDL LFL + + V+
Sbjct: 446 NYDFPSQPKIFVHRVGRTARAGRKGWSYSLVRDADAPYMLDLQLFLGRRL--------VI 497
Query: 400 LDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLY 459
G DQ + + G P+ + + V +++++ AD+ S + +LY
Sbjct: 498 GREHG-----DQVNFAEDVVVGSLPRDGLSTSCEWVTKVLENEADIYSQRTIAGKGEKLY 552
Query: 460 SKTKPLPSKESIRRGKDLPRE----GLHPMFKNVLEGGELMALAFSERLKAFRPKQTILE 515
+T+ S ES +R K + +HP+F + EL R+ +RP++TI E
Sbjct: 553 MRTRNSASLESAKRAKQVVSSDNWTAVHPLFNDQGSQMELEREKMLARIGGYRPQETIFE 612
Query: 516 AEGEAARSKHLQGPSS--------QWVDVMKKKRAVHEKIINLVHQQRS-----SKSMEK 562
R+ +G + VD KKKR + EK + V S + EK
Sbjct: 613 VHNR--RNGKHEGDEAIDTIKRIRTTVDYKKKKREMAEKQSDFVEDASSGNKGEANETEK 670
Query: 563 EVEPEADS-----------LMAKE------IKETHGSKRK---AKTFKDEEYFISSVPTN 602
+P+ D MA E +G K K A +F++ EYF+S P++
Sbjct: 671 GAQPDEDEENIGEGVPDNMSMASESDLEVTFSSYNGGKAKKDSAASFQNPEYFMSYTPSS 730
Query: 603 HHMEAGLSVRSDQGFGLNRLEA---AVLDLVADDSG-GLQKQKQVYHWDKRGKKYIKLNN 658
++ + G N +A A +DL+ D+ G + + + WDKR KKY+ N
Sbjct: 731 TNLAEDRAYGVHTGTNANFTQASRSATMDLLGDEGARGFAEPRTMMRWDKRHKKYVSRQN 790
Query: 659 GERVSASGKVVKTESGAKVKAT-KTGIYKKWKE 690
E S +VK ESGAK+ +T ++G + W++
Sbjct: 791 DEDGSKGTHLVKGESGAKIASTFRSGRFDAWRK 823
>gi|340377875|ref|XP_003387454.1| PREDICTED: ATP-dependent RNA helicase DDX54-like, partial
[Amphimedon queenslandica]
Length = 1183
Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust.
Identities = 266/509 (52%), Positives = 354/509 (69%), Gaps = 31/509 (6%)
Query: 14 EKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGK 73
++ KKK +SGGF+S+ LS V++ + +KGY+VPTPIQRKT+PLI+ G DVVAMARTGSGK
Sbjct: 41 QQNKKKKRSGGFQSMGLSHTVYKGVMKKGYRVPTPIQRKTIPLIMDGKDVVAMARTGSGK 100
Query: 74 TAAFLVPMLQRLNQHVPQ-GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
TAAFL+P+ +RL H PQ GVR LILSPTR+LALQT+KFTKELGR+T LR ++++GGD
Sbjct: 101 TAAFLIPLFERLKSHSPQVSGVRGLILSPTRELALQTMKFTKELGRFTGLRAAVILGGDR 160
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
+E QF + +NPDIIIATPGR +H L E+ DM L VEYVVFDEAD LF MGF+EQLH+I
Sbjct: 161 IEDQFSTIHENPDIIIATPGRFLHLLLEM-DMKLLHVEYVVFDEADRLFEMGFSEQLHEI 219
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
+ +L E RQTLLFSATLP L +FAKAGL DP L+RLDVD+K+S L L+ + +
Sbjct: 220 IHKLPEQRQTLLFSATLPKMLVDFAKAGLTDPVLIRLDVDSKLSNQLSLSEHVIYMY-MY 278
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
LLY++R I +QQ+++FV+TKHHVE+L + G++ S YG +DQ ARKI + +F
Sbjct: 279 TVLLYLLRSVIPPNQQSVVFVATKHHVEYLKEILSSAGIDSSYVYGSLDQTARKISIGKF 338
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
+KT L+VTD+AARGIDIPLLDNVIN+ FP K K+FVHRVGR ARAGR GTA+S V+
Sbjct: 339 LYKKTNVLLVTDIAARGIDIPLLDNVINYHFPSKAKLFVHRVGRVARAGRAGTAYSLVSP 398
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVS 432
++ AY++DLHLFL + I +E + DGV YG P I+
Sbjct: 399 DEGAYVVDLHLFLGRNI---ITESHSSKESDGV--------------YGSVPHIAIEDED 441
Query: 433 DRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPRE-GLHPMF----- 486
+ + ++ +++ +L SL++ N + Y K++ L S ESIRR K+L HP+F
Sbjct: 442 ELLIKLHNNNEELVSLRKVAENGMKHYIKSRNLSSPESIRRAKELATSLHPHPLFGSHCL 501
Query: 487 KNVLEGGELMALAFSERLKAFRPKQTILE 515
+ +E GEL++ LK ++P QTI E
Sbjct: 502 TSQVERGELLS-----ALKTYKPLQTIFE 525
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 85/158 (53%), Gaps = 30/158 (18%)
Query: 624 AAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KT 682
+AVLDL D++ +QK K++ WD++ K+++ + E +S K +KTESG + +T KT
Sbjct: 554 SAVLDLTGDENNDMQKAKRIRKWDRKRKRFVTESGKE---SSTKKIKTESGRWISSTYKT 610
Query: 683 GIYKKWKERSHKKVYLKGASNEGNAEETTSVPG------GRHLGGNNRKFRGGKNQQRSV 736
G+Y+ WK ++ KV EGN+ ++ + P GR + + GG
Sbjct: 611 GLYQTWKTKN--KV-------EGNSMDSETPPDRFTRRKGRFNPRQSTRGAGGS------ 655
Query: 737 PNAHVCSEIKDLDQVRKERQKKADRIAFMKGKTQKGKK 774
V SEIK ++++ ++RQK I FMK + Q K+
Sbjct: 656 -GGRVKSEIKSVNEILRKRQK----INFMKERRQINKR 688
>gi|452978780|gb|EME78543.1| hypothetical protein MYCFIDRAFT_10719, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 855
Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust.
Identities = 299/768 (38%), Positives = 436/768 (56%), Gaps = 116/768 (15%)
Query: 10 LKRREKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMART 69
+ R+ K+G F+S+ L+ ++ +AI RKG+ VPTPIQRKT+PLI+ G DVV MART
Sbjct: 16 VNRKNDSTAAKKAGAFKSMGLNAHLLKAITRKGFTVPTPIQRKTIPLIMDGQDVVGMART 75
Query: 70 GSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVG 129
GSGKTAAF++PM+++L H + G RA++LSP+R+LALQTLK KE+GR TDLR +LLVG
Sbjct: 76 GSGKTAAFVIPMIEKLKSHSAKVGARAVVLSPSRELALQTLKVVKEMGRGTDLRTTLLVG 135
Query: 130 GDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQL 189
GDS+E QF +A NPDIIIATPGR H E+ + L SV+YVVFDEAD LF MGFA QL
Sbjct: 136 GDSLEDQFGSMASNPDIIIATPGRFEHLKVEM-GLELSSVKYVVFDEADRLFEMGFAAQL 194
Query: 190 HKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQE 249
H+I+ L NRQTLLFSATLP +L EFA+AGL+DP LVRLD ++KI+P L+ FFT+++
Sbjct: 195 HEIMYSLPSNRQTLLFSATLPKSLVEFARAGLQDPKLVRLDAESKIAPGLQSVFFTVKRA 254
Query: 250 EKHAALLYMIREHIS---------------------------------SDQQTLIFVSTK 276
EK ALL+++++ I S T++F +TK
Sbjct: 255 EKEGALLHILQDVIKMPAGSNVAEKRDGKDKGSKKRKRDSDAPAHEAPSAHSTVVFAATK 314
Query: 277 HHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLD 336
HHVE+L + G S YG +DQ ARK+ V FR+ T L+VTDVAARG+D+PLL
Sbjct: 315 HHVEYLANFLKAYGYATSYVYGSLDQTARKMQVQDFRSGITNILVVTDVAARGLDVPLLA 374
Query: 337 NVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEE 396
NVIN+DFP +PKIFVHRVGR ARAGR G ++S +T +DM YLLDL LFL + + +E+
Sbjct: 375 NVINYDFPSQPKIFVHRVGRTARAGREGWSYSLITQQDMPYLLDLQLFLGRRLVLGRTEK 434
Query: 397 EVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAF 456
E I + G + ++ + + ++I+ DL++++
Sbjct: 435 E-------------PGIFQNAIVLGALRRDKLEPLMEESAKLIEEDDDLSAMRDVAAKGE 481
Query: 457 RLYSKTKPLPSKESIRRGKDLPREG----LHPMFKNVLEGG---ELMALAFSERLKAFRP 509
+ Y +T+ S ES++R K L + G + +F+ + + E L ++ FRP
Sbjct: 482 KQYLRTRNAASAESVKRAKTLAQSGDTTATNILFEEIDQTAADEEQRRLDMLAKVSGFRP 541
Query: 510 KQTILEAEGEAARSKHLQGPSSQWVDVMKKKRA---------------VHEKIIN----- 549
+T+ E G+ +G ++ +VM+K+RA E+ +N
Sbjct: 542 AETVFEV-GQ-------RGKLTEAAEVMRKRRAKIEPKFSKKDANDSEEEEETVNMTGRD 593
Query: 550 -----------LVHQQRSSKSMEKEVEPEAD-SLMAKEIKETHG-SKRKAKTFKDEEYFI 596
LV Q + ME+ + E + + A + + G KRK T +D ++F+
Sbjct: 594 AEAEVSEDEDELVLTQPNGADMEEASDDEIELTFTASDGPQASGRKKRKNDTGQDSDFFM 653
Query: 597 SSVPTNHHMEAGLSVRSDQGFG------------LNRLEAAVLDLVADDSGGLQK--QKQ 642
S P+ +M D+G+G L + A +DL D+ GL++ + +
Sbjct: 654 SYTPSTINMA------EDRGYGVHSGGTNANSHFLEQARGATMDLTNDEDSGLKEASRSK 707
Query: 643 VYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWK 689
WDK+ KKY++ N E S ++++ ESG K+ A+ K+G + WK
Sbjct: 708 GLRWDKKSKKYVQKANDEDGSKGARMIRGESGQKIAASFKSGRFDAWK 755
>gi|326435254|gb|EGD80824.1| hypothetical protein PTSG_11725 [Salpingoeca sp. ATCC 50818]
Length = 818
Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust.
Identities = 317/800 (39%), Positives = 454/800 (56%), Gaps = 83/800 (10%)
Query: 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPML 82
GGF+S+ LS VFR I KGYKVPTPIQRKT+PLI+ G DVV MARTGSGKTAAF++PML
Sbjct: 36 GGFQSMGLSRGVFRGIMDKGYKVPTPIQRKTIPLIIGGQDVVGMARTGSGKTAAFVIPML 95
Query: 83 QRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
++L H + G+RAL++SPTR+LA QT KF KELGR TDLR++L++GGD+M+ QF +
Sbjct: 96 EKLKSHSAKVGIRALVMSPTRELAEQTFKFIKELGRRTDLRVALILGGDNMDDQFGWMHA 155
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
NPD+I+ATPGR +H L E+E +SLK+VEYVVFDEAD LF GF E L +IL +L E+RQT
Sbjct: 156 NPDVIVATPGRFLHLLVEME-LSLKAVEYVVFDEADQLFEKGFEEHLKEILMRLPEDRQT 214
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
LLFSATLP L EFA+AGL+ P LVRLD DTK+S L+ + R+ +K A L+Y++
Sbjct: 215 LLFSATLPKKLIEFARAGLKQPTLVRLDADTKLSEQLRTQYVHCRRADKPAGLIYLLTNV 274
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
I + T++FVSTKH +E+L VL + + YG++D ARKI++++FRA K L+V
Sbjct: 275 IPRGKLTVVFVSTKHLIEYLKVLLEALQIPCTYSYGNLDPTARKINIAKFRAGKVKLLLV 334
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
TDVAARGIDIP+LD V+N+DFP +PK+FVHRVGR ARAGR+GTA+S V +++A+L+DLH
Sbjct: 335 TDVAARGIDIPMLDYVVNYDFPRRPKLFVHRVGRVARAGRSGTAYSLVAVDEVAHLIDLH 394
Query: 383 LFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSS 442
FL +P AA S D DGV +GRFPQ +ID + V +
Sbjct: 395 TFLGRPFAAAISTTPA--DQDGV--------------FGRFPQALIDEYRELVHTTHRTH 438
Query: 443 ADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREG--LHPMFKNVLEGGELMALAF 500
+DL+SL N ++ Y K++P P++ S++R K L G +HPM ++ + F
Sbjct: 439 SDLDSLFHVVENGYKQYDKSRPDPAQASVKRAKQLEEVGYHVHPMLRDT-SSDAIARDDF 497
Query: 501 SERLKAFRPKQTILEAEGEAARS-------KHLQGPSSQWVDVMKKKRAVHEK-IINLVH 552
+ ++ FRP T+ E A S K + S W + K + K + +
Sbjct: 498 IKSIRNFRPSLTVFEVNKHANDSLLTMMTKKRAKDQSYVWDRTERMKELLGAKSLTSHTR 557
Query: 553 QQRSSKSMEKEVEPEADSLMA--------------------------------------- 573
+ + S +E+ +++A
Sbjct: 558 EAQLEASTSEEITSAFSNIIAPGRNKAGLLPGTAGATVLGTAQPSSSSSSSSSSSKSVMS 617
Query: 574 --KEIKETHGSKRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVA 631
+ + +H S +D E +I + E G ++ + F E+A L
Sbjct: 618 HGQRVTVSHSSS-AGDAGEDAEVYIPYRRGDDEDEQGYAINNGASF-TREAESATFALDG 675
Query: 632 DDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKE 690
DD + K Q WD++ KK++ GE S + K+++TESG KV AT K+ YK+W
Sbjct: 676 DDIQDMHKSSQRKKWDRKKKKFV----GE--SNNTKMIRTESGNKVPATFKSNRYKEWSA 729
Query: 691 RSHKKVYLKGASNEGNAEETTSVPGGRHLGGNNRKFRGGKNQQRSVPNAHVCSEIKDLDQ 750
++H V ++ E +++ + R G + K + + A E+K Q
Sbjct: 730 KNH--VSMQHVGEEEDSQTVSKFEIRRKRRGWHTK---TADDELKAKAAKRGGELKHKSQ 784
Query: 751 VRKERQKKADRIAFMKGKTQ 770
+ KER++K MK + Q
Sbjct: 785 IIKERKRKQKLQDQMKRRAQ 804
>gi|71999644|ref|NP_741348.2| Protein Y94H6A.5, isoform a [Caenorhabditis elegans]
gi|351051383|emb|CCD74205.1| Protein Y94H6A.5, isoform a [Caenorhabditis elegans]
Length = 825
Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust.
Identities = 292/723 (40%), Positives = 429/723 (59%), Gaps = 79/723 (10%)
Query: 15 KQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKT 74
+ +K K+GG++ + L +V++AI++KG+ PTPIQRKT+P I+ G DVVAM+RTGSGKT
Sbjct: 16 QNRKHKKAGGWQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKT 75
Query: 75 AAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSME 134
AAF++PMLQ+L + G+RAL++SPTR+LALQT K KELGR+T LR + LVGGD +E
Sbjct: 76 AAFVIPMLQKLKRR-DTTGIRALMVSPTRELALQTFKVVKELGRFTGLRCACLVGGDQIE 134
Query: 135 SQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILG 194
QF + +NPDI++ATPGRL+H + E+ D+ L V+YVVFDEAD LF MGF +QL + L
Sbjct: 135 EQFSTIHENPDILLATPGRLLHVIVEM-DLRLSYVQYVVFDEADRLFEMGFQDQLTETLK 193
Query: 195 QLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAA 254
++ E+RQTLLFSATLP L +FAKAGL DP LVRLDVD K+S L + F R +EK A
Sbjct: 194 RIPESRQTLLFSATLPKMLVDFAKAGLTDPMLVRLDVDEKVSDKLSMVFCMCRPDEKLFA 253
Query: 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRA 314
LL++ R ++QT++F +T HVE++ + G++ S Y +D ARK+++ +F
Sbjct: 254 LLHLCRRMDRENKQTVVFCATMKHVEYVVGILHRAGIDCSFVYSQLDATARKMNIQKFHE 313
Query: 315 RKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
++ L+VTDVAARG+DIPLLD VIN FPPK K+FVHRVGR ARAGR+GTA S + +++
Sbjct: 314 KQNNILVVTDVAARGVDIPLLDTVINLHFPPKAKLFVHRVGRVARAGRSGTAISLIANDE 373
Query: 375 MAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDR 434
+ YL DL +FL KPI A + E D ET+ GR P +++ L ++
Sbjct: 374 LPYLTDLFMFLGKPINFASDKSEYKED---------------ETLIGRVPDSIVSLETEF 418
Query: 435 VREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK-DLPREGL----HPMFKNV 489
I D++ D+ L++ TNA Y++T+P PS ES RR K D+ + + HP K
Sbjct: 419 FHSIHDNNEDMQDLRQKATNAMMKYTRTRPPPSAESARRVKQDIRTDSVECAPHPFLK-- 476
Query: 490 LEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIIN 549
G+ + ++ ++ + TI E + SQ + VM+ KR HE I+
Sbjct: 477 -ADGDKQSNDILNKISQYKSRNTIFEMN---------KSQKSQALAVMQAKRKAHEPRIS 526
Query: 550 LVHQQR--------------------SSKSMEKEVEPEADSLMAKEI---------KETH 580
V +++ + K++E E E + I +E
Sbjct: 527 TVTEEKRKQKEEKEQQQKSTDIAVEIAEKTVENAGEDELAEVFGTVIGSTKHTEKSEEKG 586
Query: 581 GSKRKAKT-----------FKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDL 629
G KRK T F+ E++++ + ++H E L++ D + E A +D+
Sbjct: 587 GKKRKIGTGKRIDRAEQMKFEREKHYVPYMSSDHVAERHLAL--DTVDFARQAEGASVDI 644
Query: 630 VADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKW 688
+ DD G+ +QK WD+R KKY+ L+ G + K ++TE G + A+ KTG Y+ W
Sbjct: 645 IMDDDRGMYQQKHGQRWDRRLKKYVGLSGGN--EPANKKIRTEDGTWLPASYKTGKYEDW 702
Query: 689 KER 691
K++
Sbjct: 703 KQK 705
>gi|326477276|gb|EGE01286.1| ATP-dependent RNA helicase DBP10 [Trichophyton equinum CBS 127.97]
Length = 941
Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust.
Identities = 324/882 (36%), Positives = 481/882 (54%), Gaps = 155/882 (17%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+++ L+PN+ +AI RKG+ VPTPIQRKT+PL+L DVV MARTGSGKTAAF++P
Sbjct: 91 KGGGFQAMGLNPNLLKAITRKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVIP 150
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M+++L H + G R LILSP+R+LALQTLK KELGR TDL+ LLVGGDS+E QF +
Sbjct: 151 MIEKLRNHSTKVGARGLILSPSRELALQTLKVVKELGRGTDLKCVLLVGGDSLEEQFGYM 210
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
A NPDIIIATPGR +H E+ ++ L S+ Y VFDEAD LF MGFA QL +IL L +R
Sbjct: 211 ASNPDIIIATPGRFLHLKVEM-NLDLSSIRYAVFDEADRLFEMGFAAQLTEILHALPTSR 269
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSATLP +L EFA+AGL++P L+RLD D+KISPDL+ AFFT++ +K ALL+++
Sbjct: 270 QTLLFSATLPKSLVEFARAGLQEPTLIRLDADSKISPDLQSAFFTVKSADKEGALLHILH 329
Query: 261 EHIS-----------------------------------------SDQQTLIFVSTKHHV 279
+ I ++ T++FV+TKHHV
Sbjct: 330 DIIKIPTGETEAGKLAKKEAQEGKQGTSKKRKRADMKGPGAHGTPTEHSTIVFVATKHHV 389
Query: 280 EFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI 339
E++ L R G S YG ++Q ARKI V FRA + L+VTDVAARGIDIP+L NVI
Sbjct: 390 EYIANLLRHSGFAVSYAYGSLNQTARKIQVQNFRAGISNILVVTDVAARGIDIPVLANVI 449
Query: 340 NWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVL 399
N+DFP +PKI++HRVGR ARAG+ G ++S V D YL+DL LF + +
Sbjct: 450 NYDFPSQPKIYIHRVGRTARAGQKGWSYSLVRDSDAPYLIDLQLFSGRQL---------- 499
Query: 400 LDMDGVMSKIDQAIAN--GETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFR 457
+M + AN + + G P+ ++ + V +++ D+ L+ +
Sbjct: 500 -----LMGRTATENANYAEDIVVGSLPRKSLESHCEYVDKLLSDDVDIEGLRSVSIRGEK 554
Query: 458 LYSKTKPLPSKESIRRGKDLPREG----LHPMFKNVLEGGELMALAFSERLKAFRPKQTI 513
LY +T+ S ES +R KD+ +HP+F + E+ R+ ++P++T+
Sbjct: 555 LYMRTRNSASAESAKRAKDIVAADAWVTIHPLFNDESSRLEVEREQMLARVGGYKPQETV 614
Query: 514 LEAEGEAARSKHLQGPSSQWVDVMKKKRAVHE--KIINLVHQQ----------------- 554
E G+ + + + + V+VM+K R+V E KI + Q
Sbjct: 615 FEVMGK----RGGKSGNEEAVEVMRKIRSVMERKKIRRELASQHSPLQNSKEGKVDDDAG 670
Query: 555 -----RSSKSMEKEVEPEADSLMAKE--IKETHGSKRKAK------------TFKDEEYF 595
+S ++ ++ + D +A+E ++ T +++K TF++ EYF
Sbjct: 671 ENLGDKSDDDIDASIQDDPDMSLAEESDLEVTFSYPKQSKSRSNVENGNQSNTFQNPEYF 730
Query: 596 ISSVPTNHHMEAGLSVRSDQGFGL--------NRLEA---AVLDLVADDSG-GLQKQKQV 643
+S PT+ +S+ D+G+G+ N +EA A +DL D+ GL +
Sbjct: 731 MSYTPTS------ISLTEDRGYGVHSGSNSNTNFVEASRSATMDLNGDEGARGLGGAGSI 784
Query: 644 YHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKE-RSHKKVYLKGA 701
WDKR KKY+ N E S K+V+ ESGAK+ A+ ++G + WK+ + ++ G
Sbjct: 785 KRWDKRHKKYVLRQNDEDGSKGEKLVRGESGAKIAASFRSGRFDSWKKGKRLGRMPRVGE 844
Query: 702 SNEGNAEETTSVPGGRHLGGNNR------KFRG--------GKNQQRSVPNA-------- 739
N T +PG ++ + K+RG G+ Q+ +A
Sbjct: 845 MENSNLGNTGGIPGRKYRHNKEQAPKAADKYRGDYEKMKKKGEAMQKRREDAGIPTYGGK 904
Query: 740 -HVCSEIKDLDQVRKERQKKADRIAFMKGKTQKGKKFSKNGK 780
+V SE+K+ + VRK R++ ++ + +K + SK GK
Sbjct: 905 KNVKSELKNSEDVRKARKQ-------LEKRKEKNARPSKKGK 939
>gi|452838537|gb|EME40477.1| hypothetical protein DOTSEDRAFT_90700 [Dothistroma septosporum
NZE10]
Length = 1010
Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust.
Identities = 307/772 (39%), Positives = 425/772 (55%), Gaps = 130/772 (16%)
Query: 12 RREKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGS 71
R+ + K K+G F+++ L+ ++ +AI RKG+ VPTPIQRKT+PLIL G DVV MARTGS
Sbjct: 170 RKSENKNAKKAGAFQTMGLNTHLLKAITRKGFSVPTPIQRKTIPLILDGQDVVGMARTGS 229
Query: 72 GKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGD 131
GKTAAF++PM+++L H + G RA++LSP+R+LALQTLK KE+G+ TDLR +LLVGGD
Sbjct: 230 GKTAAFVIPMIEKLKSHSAKVGARAIVLSPSRELALQTLKVVKEMGKGTDLRTTLLVGGD 289
Query: 132 SMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHK 191
S+E QF +A NPDIIIATPGR H E+ + L SV+YVVFDEAD LF MGFA QLH+
Sbjct: 290 SLEDQFSSMASNPDIIIATPGRFEHLKVEM-GLELSSVKYVVFDEADRLFEMGFAAQLHE 348
Query: 192 ILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEK 251
I+ L NRQTLLFSATLP +L EFA+AGL+DP LVRLD ++KI+P L+ AFFT+++ EK
Sbjct: 349 IMYSLPPNRQTLLFSATLPKSLVEFARAGLQDPKLVRLDAESKIAPGLQSAFFTVKRAEK 408
Query: 252 HAALLYMIREHIS-----------------------------------SDQQTLIFVSTK 276
ALL+++++ I S T+IF +TK
Sbjct: 409 EGALLHVLQDVIQMPTGETDAAKKANAPKKNDKKRKRGPDTPSAKETPSQHSTVIFTATK 468
Query: 277 HHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLD 336
HHVE+L + G S YG +DQ ARK+ V FR T ++VTDVAARGIDIP+L
Sbjct: 469 HHVEYLANFLKSFGYAVSYVYGALDQTARKMQVEDFRRGMTNIMVVTDVAARGIDIPVLA 528
Query: 337 NVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEE 396
NVIN+DFP +PK+FVHRVGR ARAG+ G A+S +TS D+ YLLDL LFLS+ + +E
Sbjct: 529 NVINYDFPSQPKVFVHRVGRTARAGKQGWAYSLITSSDLPYLLDLQLFLSRRLVLGRAEH 588
Query: 397 EVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAF 456
+ + D V + G + I+ S+ ++++ DL ++
Sbjct: 589 DSNMFKDAV-------------VIGAMKRDKIEQYSEEALKLLNEDDDLALMRDVAAKGE 635
Query: 457 RLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVL------EGGELMALAFSERLKAFRPK 510
+ Y +T+ S ES++R KDL G H N+L E E L R+ FRPK
Sbjct: 636 KQYMRTRNAASAESVKRAKDLS-AGEHFSEANMLFDAHGHEDVEQQRLDMLARVSGFRPK 694
Query: 511 QTILE------------------------------------AEGE----AARSKHLQGPS 530
+T+ E AEGE AA+S HL+
Sbjct: 695 ETVFEVGKRGVAQEAAEIQAIKRRRAKMESKPKKQKDEDSDAEGEISGVAAKSSHLEEDD 754
Query: 531 SQWVDVMKKKRAVHEKIINLVHQQRSSKSMEKEVEPEADSLMAKEIKETHGSKRKAKTFK 590
S +LV Q + M++ + E + K+K T K
Sbjct: 755 SD---------------EDLVLTQPNGVDMDEASDSELKLTFSAPEDPATRHKKKRTTGK 799
Query: 591 DEEYFISSVPTNHHMEAGLSVRSDQGFG----------LNRLEAAVLDLVADDSGGLQKQ 640
DEE+F+ P+ +++ D+ +G LN A +DL D+S G ++
Sbjct: 800 DEEFFMGYNPST------INIAEDKAYGVNSGGTNSHFLNDARGATMDLTNDESSGFKEA 853
Query: 641 KQV--YHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWK 689
+ WDK+ KKY+ N E S K++K ESG K+ A+ K+G + W+
Sbjct: 854 TKAKGLRWDKKSKKYVARANDEDGSKGAKMIKGESGQKIAASFKSGRFDAWR 905
>gi|302506487|ref|XP_003015200.1| hypothetical protein ARB_06323 [Arthroderma benhamiae CBS 112371]
gi|291178772|gb|EFE34560.1| hypothetical protein ARB_06323 [Arthroderma benhamiae CBS 112371]
Length = 940
Score = 513 bits (1322), Expect = e-142, Method: Compositional matrix adjust.
Identities = 324/882 (36%), Positives = 481/882 (54%), Gaps = 155/882 (17%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+++ L+P + +AI RKG+ VPTPIQRKT+PL+L DVV MARTGSGKTAAF++P
Sbjct: 90 KGGGFQAMGLNPTLLKAITRKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVIP 149
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M+++L H + G R LILSP+R+LALQTLK KELGR TDL+ LLVGGDS+E QF +
Sbjct: 150 MIEKLRNHSTKVGARGLILSPSRELALQTLKVVKELGRGTDLKCVLLVGGDSLEEQFGYM 209
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
A NPDIIIATPGR +H E+ ++ L S+ Y VFDEAD LF MGFA QL +IL L +R
Sbjct: 210 ASNPDIIIATPGRFLHLKVEM-NLDLSSIRYAVFDEADRLFEMGFAAQLTEILHALPTSR 268
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSATLP +L EFA+AGL++P L+RLD D+KISPDL+ AFFT++ +K ALL+++
Sbjct: 269 QTLLFSATLPKSLVEFARAGLQEPTLIRLDADSKISPDLQSAFFTVKSADKEGALLHILH 328
Query: 261 EHIS-----------------------------------------SDQQTLIFVSTKHHV 279
+ I ++ T++FV+TKHHV
Sbjct: 329 DLIKIPTGETEAGKLAKKEAQEGKQGTSKKRKRVDMKGPGTHGTPTEHSTIVFVATKHHV 388
Query: 280 EFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI 339
E++ L R G S YG ++Q ARKI V FRA + L+VTDVAARGIDIP+L NVI
Sbjct: 389 EYIANLLRHSGFAVSYAYGSLNQTARKIQVQNFRAGISNILVVTDVAARGIDIPVLANVI 448
Query: 340 NWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVL 399
N+DFP +PKI++HRVGR ARAG+ G ++S V D YL+DL LFL + +
Sbjct: 449 NYDFPSQPKIYIHRVGRTARAGQKGWSYSLVRDSDAPYLIDLQLFLGRRL---------- 498
Query: 400 LDMDGVMSKIDQAIAN--GETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFR 457
+M + AN + + G P+ ++ + V +++ D+ L+ +
Sbjct: 499 -----LMGRTATENANYAEDIVVGSLPRKSLESHCEYVDKLLSDDIDIEGLRSVSIRGEK 553
Query: 458 LYSKTKPLPSKESIRRGKDLPREG----LHPMFKNVLEGGELMALAFSERLKAFRPKQTI 513
LY +T+ S ES +R KD+ +HP+F + E+ R+ ++P++T+
Sbjct: 554 LYMRTRNSASAESAKRAKDIVAADAWVTIHPLFNDESSRLEVEREQMLARVGGYKPQETV 613
Query: 514 LEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEK--------IINLVHQQR---------- 555
E G+ + + + + V+VM+K R+V E+ NL Q
Sbjct: 614 FEVMGK----RGGKSGNEEAVEVMRKIRSVMERKKIRRELASQNLPLQNSKEEEIADDAG 669
Query: 556 ------SSKSMEKEVEPEADSLMAKE--IKETHGSKRKAK------------TFKDEEYF 595
S + ++ ++ + D +A+E ++ T +++K TF++ EYF
Sbjct: 670 ENLGDMSDEDIDASIQDDPDMSLAEESDLEVTFSYPKQSKSRSNVENGNQSNTFQNPEYF 729
Query: 596 ISSVPTNHHMEAGLSVRSDQGFGL--------NRLEA---AVLDLVADDSG-GLQKQKQV 643
+S PT+ +S+ D+G+G+ N +EA A +DL D+ GL +
Sbjct: 730 MSYTPTS------ISLTEDRGYGVHSGSNSKTNFVEASRSATMDLNGDEGARGLGGAGSI 783
Query: 644 YHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKE-RSHKKVYLKGA 701
WDKR KKY+ N E S K+V+ ESGAK+ A+ ++G + WK+ + ++ G
Sbjct: 784 KRWDKRHKKYVLRQNDEDGSKGEKLVRGESGAKIAASFRSGRFDSWKKGKRLGRMPRVGE 843
Query: 702 SNEGNAEETTSVPGGRHLGGNNR------KFRG--------GKNQQRSVPNA-------- 739
N T +PG ++ + K+RG G+ Q+ +A
Sbjct: 844 MENSNLGNTGGIPGRKYRHNKEQAPKAADKYRGDYEKMKKKGEAMQKRREDAGIPTYGGK 903
Query: 740 -HVCSEIKDLDQVRKERQKKADRIAFMKGKTQKGKKFSKNGK 780
+V SE+K+ + VRK R++ ++ + +K + SK GK
Sbjct: 904 KNVKSELKNSEDVRKARKQ-------LEKRREKNARPSKKGK 938
>gi|346325171|gb|EGX94768.1| dead box ATP-dependent rna helicase [Cordyceps militaris CM01]
Length = 891
Score = 513 bits (1321), Expect = e-142, Method: Compositional matrix adjust.
Identities = 315/808 (38%), Positives = 451/808 (55%), Gaps = 112/808 (13%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+++ ++ N+ +AI RKG+ VPTPIQRKT+PL+L DVV MARTGSGKTAAF++P
Sbjct: 81 KGGGFQAMGINANLLKAIARKGFSVPTPIQRKTIPLVLDRKDVVGMARTGSGKTAAFVIP 140
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M++RL H Q G RALI+SP+R+LA+QTLK KEL R TDL+ LLVGGDS+E QF +
Sbjct: 141 MIERLRAHSAQFGSRALIMSPSRELAIQTLKVVKELSRGTDLKAVLLVGGDSLEEQFGFM 200
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
A NPDI+IATPGR +H E+ ++L S++YVVFDEAD LF MGFA QL +IL L +R
Sbjct: 201 AANPDIVIATPGRFLHLKVEMS-LNLSSIKYVVFDEADRLFEMGFAAQLTEILHALPLSR 259
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSATLP++L EFA+AGL+DP LVRLD DTK+SPDL+ A+F+++ EK +LL+++
Sbjct: 260 QTLLFSATLPTSLVEFARAGLQDPSLVRLDADTKVSPDLESAYFSIKGGEKEGSLLHILH 319
Query: 261 EHIS-----------------------------SDQQTLIFVSTKHHVEFLNVLFREEGL 291
+ I + T++F +TKHHVE++ L + G
Sbjct: 320 DVIKVPVGKPEDADDSEKDSKKRKRGPDGPARPTKHSTIVFTATKHHVEYIANLLQWAGF 379
Query: 292 EPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFV 351
S YG +DQ AR+I V FR KT L+VTDVAARGIDIP+L NVIN+DFP +PKIFV
Sbjct: 380 AVSHAYGSLDQTARRIQVEDFRHGKTNILVVTDVAARGIDIPVLANVINYDFPSQPKIFV 439
Query: 352 HRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQ 411
HRVGR ARAG+ G ++S V D YL+DL LFL K + +E+ D
Sbjct: 440 HRVGRTARAGQRGWSYSLVRDTDAPYLVDLQLFLGKQLVIGQQKEKPSYADD-------- 491
Query: 412 AIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESI 471
+ G + ++ + +I + D+++LQ+ A +LY KT+ S +S
Sbjct: 492 ------VVVGSLIRNTLEEHVEWFNRVIHDNDDISALQKVSIKAEKLYLKTRNSASSQSA 545
Query: 472 RRGKDLPREG----LHPMFKNVLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQ 527
+R +++ G LHP+F N ++ GE ++ FRP +TI E +RS
Sbjct: 546 KRAREVVASGAWVQLHPLFGNDVDRGEKARAEMMAKISGFRPNETIF----EISRSDK-- 599
Query: 528 GPSSQWVDVMKKKRAVHEKIINLVHQQRSSKSMEKEVEPEADSLMAKE------------ 575
S++ DVMK+ R + ++R +++E+E + + +
Sbjct: 600 -SSNEAADVMKQIRK------KITPRRRPEAVVQEEIEDDGMGALTMDDSDEAVVDDGGL 652
Query: 576 --------------IKETHGSKRKAKTFKDEEYFISSVP--TNHHMEAGLSVRSDQGFGL 619
+ SK+ ++D + F++ P TN E G V S G G
Sbjct: 653 DAVDDDSDDGLEVTVSNAGKSKKDRDDWRDADVFMTYTPRTTNVAEERGYGVHSG-GAGS 711
Query: 620 NRLEAA---VLDLVADDSGGL--QKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESG 674
+ +EAA +DL D+S + KQ WDK+ KKY+ N E S K+V ESG
Sbjct: 712 SFIEAARDVTMDLGNDESAKSFGEANKQRLRWDKKSKKYVARQNDEDGSKGAKMVTGESG 771
Query: 675 AKVKAT-KTGIYKKWKERSHK--KVYLKGASNEGNAEETTSVPGGRHLGGNNRKFRGGKN 731
K+ A+ ++G Y +W+ ++H+ + G + A S G R+ K+
Sbjct: 772 VKIAASFQSGRYDRWR-KAHRMGRTQRVGEDEKAGAAALLSQGGARY-----------KH 819
Query: 732 QQRSVPNAHVCSEIKDLDQVRKERQKKA 759
+Q P A + +D QVRK+R +A
Sbjct: 820 KQEKAPKA--ADKYRDDFQVRKKRVDEA 845
>gi|169773155|ref|XP_001821046.1| ATP-dependent RNA helicase DBP10 [Aspergillus oryzae RIB40]
gi|238491104|ref|XP_002376789.1| ATP dependent RNA helicase (Dbp10), putative [Aspergillus flavus
NRRL3357]
gi|91208275|sp|Q2UHC1.1|DBP10_ASPOR RecName: Full=ATP-dependent RNA helicase dbp10
gi|83768907|dbj|BAE59044.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220697202|gb|EED53543.1| ATP dependent RNA helicase (Dbp10), putative [Aspergillus flavus
NRRL3357]
Length = 929
Score = 513 bits (1321), Expect = e-142, Method: Compositional matrix adjust.
Identities = 303/754 (40%), Positives = 426/754 (56%), Gaps = 100/754 (13%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+++ L+ ++ +AI RKG+ VPTPIQRKT+P+I+ G DVV MARTGSGKTAAF++P
Sbjct: 87 KGGGFQAMGLNAHLLKAITRKGFSVPTPIQRKTIPVIMDGQDVVGMARTGSGKTAAFVIP 146
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M+++L H + G R LILSP+R+LALQTLK KELG+ TDL+ LLVGGDS+E QF +
Sbjct: 147 MIEKLKSHSTKVGARGLILSPSRELALQTLKVVKELGKGTDLKSVLLVGGDSLEEQFSLM 206
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
A NPDI+IATPGR +H E+ ++ L S+ YVVFDEAD LF MGFA+QL +IL L NR
Sbjct: 207 AGNPDIVIATPGRFLHLKVEM-NLDLSSIRYVVFDEADRLFEMGFADQLTEILYGLPANR 265
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSATLP +L EFA+AGL++P L+RLD ++KISPDL+ FF+++ EK ALL+++
Sbjct: 266 QTLLFSATLPKSLVEFARAGLQEPTLIRLDTESKISPDLENVFFSVKSSEKEGALLHILH 325
Query: 261 EHIS-----------------------------------------SDQQTLIFVSTKHHV 279
E I + T++F +TKHHV
Sbjct: 326 EVIKMPTGPTEAAQRQKEQGDGKNFKNFKKRKRGDDKAINFQESPTKYSTIVFAATKHHV 385
Query: 280 EFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI 339
++L L RE G S YG +DQ ARKI V FRA + L+VTDVAARGIDIP+L NVI
Sbjct: 386 DYLYSLLREAGFAVSYAYGSLDQTARKIQVQNFRAGLSNILVVTDVAARGIDIPILANVI 445
Query: 340 NWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVL 399
N+DFP +PKIFVHRVGR ARAGR G ++S V D Y+LDL LFL + + V+
Sbjct: 446 NYDFPSQPKIFVHRVGRTARAGRKGWSYSLVRDADAPYMLDLQLFLGRRL--------VI 497
Query: 400 LDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLY 459
G DQ + + G P+ + + V +++++ AD+ S + +LY
Sbjct: 498 GREHG-----DQVNFAEDVVVGSLPRDGLSTSCEWVTKVLENEADIYSQRTIAGKGEKLY 552
Query: 460 SKTKPLPSKESIRRGKDLPRE----GLHPMFKNVLEGGELMALAFSERLKAFRPKQTILE 515
+T+ S ES +R K + +HP+F + EL R+ +RP++TI E
Sbjct: 553 MRTRNSASLESAKRAKQVVSSDNWTAVHPLFNDQGSQMELEREKMLARIGGYRPQETIFE 612
Query: 516 AEGEAARSKHLQGPSS--------QWVDVMKKKRAVHEKIINLVHQQRS------SKSME 561
R+ +G + VD KKKR + EK + V S +++ E
Sbjct: 613 VHNR--RNGKHEGDEAIDTIKRIRTTVDYKKKKREMAEKQSDFVEDASSGNKGEANETEE 670
Query: 562 KEVEPEADS-----------LMAKE------IKETHGSKRK---AKTFKDEEYFISSVPT 601
+P+ D MA E +G K K A +F++ EYF+S P+
Sbjct: 671 TGAQPDEDEEDIGEGVPDNMSMASESDLEVTFSSYNGGKAKKDSAASFQNPEYFMSYTPS 730
Query: 602 NHHMEAGLSVRSDQGFGLNRLEA---AVLDLVADDSG-GLQKQKQVYHWDKRGKKYIKLN 657
+ ++ + G N +A A +DL+ D+ G + + + WDKR KKY+
Sbjct: 731 STNLAEDRAYGVHTGTNANFTQASRSATMDLLGDEGARGFAEPRTMMRWDKRHKKYVSRQ 790
Query: 658 NGERVSASGKVVKTESGAKVKAT-KTGIYKKWKE 690
N E S +VK ESGAK+ +T ++G + W++
Sbjct: 791 NDEDGSKGTHLVKGESGAKIASTFRSGRFDAWRK 824
>gi|449295671|gb|EMC91692.1| hypothetical protein BAUCODRAFT_301346 [Baudoinia compniacensis
UAMH 10762]
Length = 909
Score = 513 bits (1321), Expect = e-142, Method: Compositional matrix adjust.
Identities = 304/783 (38%), Positives = 439/783 (56%), Gaps = 125/783 (15%)
Query: 3 LVSSKAELKRREKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGAD 62
+ +++A + R+ + K+G F+ + L+ N+ +AI RKG+ VPTPIQRKT+PLIL G D
Sbjct: 57 IAATQAAVNRKADSRTTKKAGAFQRMGLNANLLKAITRKGFTVPTPIQRKTVPLILDGQD 116
Query: 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDL 122
VV MARTGSGKTAAF++PM+++L H + G RA++LSP+R+LALQTLK K+ GR TDL
Sbjct: 117 VVGMARTGSGKTAAFVIPMIEKLKSHSAKVGARAIVLSPSRELALQTLKVVKDFGRGTDL 176
Query: 123 RISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG 182
R +LLVGGDS+E QF +A NPDIIIATPGR H E+ + L SV+YVVFDEAD LF
Sbjct: 177 RATLLVGGDSLEDQFGSIASNPDIIIATPGRFEHLKVEM-GLELSSVKYVVFDEADRLFE 235
Query: 183 MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLA 242
MGFA QLH+I+ L +RQTLLFSATLP L EFA+AGL+DP LVRLD ++KI+P L+ A
Sbjct: 236 MGFAAQLHEIMHSLPASRQTLLFSATLPKGLVEFARAGLQDPKLVRLDAESKIAPGLESA 295
Query: 243 FFTLRQEEKHAALLYMIREHIS------------------------------------SD 266
FFT+++ EK ALL+++++ IS S
Sbjct: 296 FFTVKRSEKEGALLHILQDVISMPTGPTDATTKVKEQSANNSKKRKRGAEDQGPNDTPSP 355
Query: 267 QQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVA 326
T++F +TKHHV++L L + S YG +DQ ARK+ V FR+ T L+VTDVA
Sbjct: 356 YSTVVFAATKHHVDYLAALLKAHNYATSYVYGSLDQTARKMQVQDFRSGFTNILVVTDVA 415
Query: 327 ARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLS 386
ARG+DIP+L NVIN+DFP +PKIFVHRVGR ARAG+TG ++S VT +DM YLLDL LFLS
Sbjct: 416 ARGLDIPILANVINYDFPSQPKIFVHRVGRTARAGKTGWSYSLVTGQDMPYLLDLQLFLS 475
Query: 387 KPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLN 446
+ + + E DM AI + G + ++ + ++ID DL
Sbjct: 476 RKLVLGRANRES--DM------FSSAI-----VVGALTTSQLERCCEETAKLIDDDTDLA 522
Query: 447 SLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVLEGGELMA------LAF 500
+++ + Y +T+ S ES++R K + +G+ + N+L G + A +
Sbjct: 523 AMREVAGKGEKQYLRTRNAASAESVKRAKQIAGDGVIGI--NMLFGEDDGADIEQRRIDM 580
Query: 501 SERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHE--------------- 545
R+ FRP++T+ E + A ++ +V+KK+RA E
Sbjct: 581 LARVSGFRPQETVFEIGRKGA-------AWNESAEVVKKQRARIEAKQQTRAEAEEQATS 633
Query: 546 --------KIINLVHQQRSSKSMEKEVE---PEADSL----------------MAKEIKE 578
++L Q E E+E P+A + + E
Sbjct: 634 AGGPLQSSTALDLTAGQSLDDDSEDELELTKPDAYDMAEASDTELELTFTAPDASPEPSR 693
Query: 579 THGSKRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFG----------LNRLEAAVLD 628
+K K +T++D E+F+S +PT+ + D+G+G LN + A +D
Sbjct: 694 NKRNKDKPETWQDSEHFMSYMPTS------FNAAEDRGYGVHSGGTNSHFLNAAKDATMD 747
Query: 629 LVADDSGGLQK-QKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYK 686
L D+S ++ K WDK+ KKY++ N E S K ++ ESG K+ A+ ++G +
Sbjct: 748 LAQDESSSFKEASKPGMRWDKKSKKYVRRENDEDGSKGQKFIRGESGQKIAASFRSGRFD 807
Query: 687 KWK 689
W+
Sbjct: 808 AWR 810
>gi|315045858|ref|XP_003172304.1| ATP-dependent RNA helicase DBP10 [Arthroderma gypseum CBS 118893]
gi|311342690|gb|EFR01893.1| ATP-dependent RNA helicase DBP10 [Arthroderma gypseum CBS 118893]
Length = 940
Score = 513 bits (1321), Expect = e-142, Method: Compositional matrix adjust.
Identities = 299/766 (39%), Positives = 429/766 (56%), Gaps = 120/766 (15%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+++ L+PN+ +AI RKG+ VPTPIQRKT+PL+L DVV MARTGSGKTAAF++P
Sbjct: 90 KGGGFQAMGLNPNLLKAITRKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVIP 149
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M+++L H + G R LILSP+R+LALQTLK KELGR TDL+ LLVGGDS+E QF +
Sbjct: 150 MIEKLKNHSTKVGARGLILSPSRELALQTLKVVKELGRGTDLKCVLLVGGDSLEEQFGYM 209
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
A NPDIIIATPGR +H E+ + L S+ Y VFDEAD LF MGFA QL +IL L +R
Sbjct: 210 AGNPDIIIATPGRFLHLKVEMS-LDLSSIRYAVFDEADRLFEMGFAAQLTEILHALPSSR 268
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSATLP +L EFA+AGL++P L+RLD D+KISPDL+ AFFT++ +K ALL+++
Sbjct: 269 QTLLFSATLPKSLVEFARAGLQEPVLIRLDADSKISPDLQSAFFTVKSADKEGALLHILH 328
Query: 261 EHIS-----------------------------------------SDQQTLIFVSTKHHV 279
+ I ++ T++FV+TKHHV
Sbjct: 329 DLIKIPTGETEAGKLAKKETHEAKQGTSKKRKRSDMKGQGAHGTPTEHSTIVFVATKHHV 388
Query: 280 EFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI 339
E++ L R G S YG ++Q ARKI V FRA + L+VTDVAARGIDIP+L NVI
Sbjct: 389 EYIANLLRHSGFAVSYAYGSLNQTARKIQVQNFRAGISNILVVTDVAARGIDIPVLANVI 448
Query: 340 NWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVL 399
N+DFP +PKI++HRVGR ARAG+ G ++S V D YL+DL LFL + L
Sbjct: 449 NYDFPSQPKIYIHRVGRTARAGQKGWSYSLVRDSDAPYLIDLQLFLGRK----------L 498
Query: 400 LDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLY 459
L G + A + + G P+ ++ + V +++ D+ L+ +LY
Sbjct: 499 LMGRGTTENANYA---EDIVVGSLPRKSLESHCEYVDKLLSEDIDIEGLRSVSIRGEKLY 555
Query: 460 SKTKPLPSKESIRRGKDLPREG----LHPMFKNVLEGGELMALAFSERLKAFRPKQTILE 515
+T+ S ES +R KD+ +HP+F + E+ R+ ++P++T+ E
Sbjct: 556 MRTRNSASAESAKRAKDIVAADAWGTIHPLFNDESSRMEVERENMLARVGGYKPQETVFE 615
Query: 516 AEGEAARSKHLQGPSSQWVDVMKKKRAVHEK--------IINLVHQQRSSKSMEKEVEPE 567
G+ + + + + V+VM+K R+V E+ NL Q S++ +
Sbjct: 616 VMGK----RGGKSGNEEAVEVMRKIRSVMERKKIRRELASQNLPLQSSKDGSIDDDAGEN 671
Query: 568 ADSLMAKEIKETHGSK------------------------------RKAKTFKDEEYFIS 597
D + A+++ + S ++ +F++ EYF+S
Sbjct: 672 LDGISAEDVDASIQSDPDMSLAEESDLEVTFSYPKQSKSRSNGQDGNQSNSFQNPEYFMS 731
Query: 598 SVPTNHHMEAGLSVRSDQGFGL--------NRLEA---AVLDLVADDSG-GLQKQKQVYH 645
PT+ +S+ D+G+G+ N +EA A +DL D+ GL +
Sbjct: 732 YTPTS------ISLTEDRGYGVHSGSNSNTNFVEASRSATMDLNGDEGARGLGGASSIKR 785
Query: 646 WDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKE 690
WDKR KKY+ N E S K+V+ ESGAK+ A+ ++G + WK+
Sbjct: 786 WDKRHKKYVLRQNDEDGSKGEKLVRGESGAKIAASFRSGRFDSWKK 831
>gi|71999646|ref|NP_741347.2| Protein Y94H6A.5, isoform b [Caenorhabditis elegans]
gi|351051384|emb|CCD74206.1| Protein Y94H6A.5, isoform b [Caenorhabditis elegans]
Length = 871
Score = 513 bits (1320), Expect = e-142, Method: Compositional matrix adjust.
Identities = 292/723 (40%), Positives = 428/723 (59%), Gaps = 79/723 (10%)
Query: 15 KQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKT 74
+ +K K+GG++ + L +V++AI++KG+ PTPIQRKT+P I+ G DVVAM+RTGSGKT
Sbjct: 16 QNRKHKKAGGWQQIGLDHSVYKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGSGKT 75
Query: 75 AAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSME 134
AAF++PMLQ+L + G+RAL++SPTR+LALQT K KELGR+T LR + LVGGD +E
Sbjct: 76 AAFVIPMLQKLKRR-DTTGIRALMVSPTRELALQTFKVVKELGRFTGLRCACLVGGDQIE 134
Query: 135 SQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILG 194
QF + +NPDI++ATPGRL+H + E+ D+ L V+YVVFDEAD LF MGF +QL + L
Sbjct: 135 EQFSTIHENPDILLATPGRLLHVIVEM-DLRLSYVQYVVFDEADRLFEMGFQDQLTETLK 193
Query: 195 QLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAA 254
++ E+RQTLLFSATLP L +FAKAGL DP LVRLDVD K+S L + F R +EK A
Sbjct: 194 RIPESRQTLLFSATLPKMLVDFAKAGLTDPMLVRLDVDEKVSDKLSMVFCMCRPDEKLFA 253
Query: 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRA 314
LL++ R ++QT++F +T HVE++ + G++ S Y +D ARK+++ +F
Sbjct: 254 LLHLCRRMDRENKQTVVFCATMKHVEYVVGILHRAGIDCSFVYSQLDATARKMNIQKFHE 313
Query: 315 RKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
++ L+VTDVAARG+DIPLLD VIN FPPK K+FVHRVGR ARAGR+GTA S + +++
Sbjct: 314 KQNNILVVTDVAARGVDIPLLDTVINLHFPPKAKLFVHRVGRVARAGRSGTAISLIANDE 373
Query: 375 MAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDR 434
+ YL DL +FL KPI A + E D ET+ GR P +++ L ++
Sbjct: 374 LPYLTDLFMFLGKPINFASDKSEYKED---------------ETLIGRVPDSIVSLETEF 418
Query: 435 VREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK-DLPREGL----HPMFKNV 489
I D++ D+ L++ TNA Y++T+P PS ES RR K D+ + + HP K
Sbjct: 419 FHSIHDNNEDMQDLRQKATNAMMKYTRTRPPPSAESARRVKQDIRTDSVECAPHPFLK-- 476
Query: 490 LEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIIN 549
G+ + ++ ++ + TI E + SQ + VM+ KR HE I+
Sbjct: 477 -ADGDKQSNDILNKISQYKSRNTIFEMN---------KSQKSQALAVMQAKRKAHEPRIS 526
Query: 550 LVHQ--------------------QRSSKSMEKEVEPEADSLMAKEI---------KETH 580
V + + + K++E E E + I +E
Sbjct: 527 TVTEEKRKQKEEKEQQQKSTDIAVEIAEKTVENAGEDELAEVFGTVIGSTKHTEKSEEKG 586
Query: 581 GSKRKAKT-----------FKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDL 629
G KRK T F+ E++++ + ++H E L++ D + E A +D+
Sbjct: 587 GKKRKIGTGKRIDRAEQMKFEREKHYVPYMSSDHVAERHLAL--DTVDFARQAEGASVDI 644
Query: 630 VADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKW 688
+ DD G+ +QK WD+R KKY+ L+ G + K ++TE G + A+ KTG Y+ W
Sbjct: 645 IMDDDRGMYQQKHGQRWDRRLKKYVGLSGGN--EPANKKIRTEDGTWLPASYKTGKYEDW 702
Query: 689 KER 691
K++
Sbjct: 703 KQK 705
>gi|258573243|ref|XP_002540803.1| predicted protein [Uncinocarpus reesii 1704]
gi|237901069|gb|EEP75470.1| predicted protein [Uncinocarpus reesii 1704]
Length = 937
Score = 512 bits (1319), Expect = e-142, Method: Compositional matrix adjust.
Identities = 315/808 (38%), Positives = 441/808 (54%), Gaps = 131/808 (16%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+++ L+ + ++I RKG+ VPTPIQRKT+PL+L DVV MARTGSGKTAAF++P
Sbjct: 88 KGGGFQAMGLNATLLKSITRKGFSVPTPIQRKTIPLVLDEQDVVGMARTGSGKTAAFVIP 147
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M+++L H + G RALI+SP+R+LALQTLK KELGR TDL+ LLVGGDS+E QF +
Sbjct: 148 MIEKLKSHSSKIGSRALIMSPSRELALQTLKVVKELGRGTDLKCVLLVGGDSLEEQFGYM 207
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
A NPDIIIATPGR +H E+ ++ L S++YVVFDEAD LF MGFA QL +IL L ++R
Sbjct: 208 AGNPDIIIATPGRFLHLKVEM-NLDLSSIKYVVFDEADRLFEMGFAAQLTEILHGLPQSR 266
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI- 259
QTLLFSATLP +L EFA+AGL+DP LVRLD ++KISPDL+ AFFT++ EK ALL+++
Sbjct: 267 QTLLFSATLPKSLVEFARAGLQDPTLVRLDTESKISPDLQNAFFTVKSAEKEGALLHILH 326
Query: 260 ----------------REHISS----------------------DQQTLIFVSTKHHVEF 281
+E SS + T++FV+TKHHV++
Sbjct: 327 NVIKVPTGETEAGIRAKEQSSSGKHSKKRKRSEQNNPSPQESPTEHSTIVFVATKHHVDY 386
Query: 282 LNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINW 341
+ + RE G + YG +DQ ARKI V+ FRA + L+VTDVAARGIDIP+L NVIN+
Sbjct: 387 IASILRESGFAVAYAYGSLDQTARKIQVNNFRAGISNILVVTDVAARGIDIPVLANVINY 446
Query: 342 DFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLD 401
DFP + KIFVHRVGR ARAGR G ++S V D YLLDL LFL + + + +E
Sbjct: 447 DFPSQAKIFVHRVGRTARAGRKGWSYSLVRDSDAPYLLDLQLFLGRRLIMGRNSKEAPNF 506
Query: 402 MDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSK 461
D V + G + + + V +++D D+ S + +LY +
Sbjct: 507 ADDV-------------VVGSIARDGLARHCEWVSKLLDEDIDIQSQREVAMKGEKLYMR 553
Query: 462 TKPLPSKESIRRGKDLPREG----LHPMFKNVLEGGELMALAFSERLKAFRPKQTILEAE 517
T+ S ES +R KD+ LHP+F + E+ R+ ++P++TI E
Sbjct: 554 TRNSASTESAKRSKDVVGSDEWTMLHPLFNDEASQMEVEREKMLARIGGYKPQETIFEIS 613
Query: 518 GEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKSMEKEVEPEAD----SLM- 572
G + + + +D+M+K R+ EK +R+ K E + +AD S M
Sbjct: 614 GR----RGGKAGDDEAMDMMRKIRSTVEK-------RRAKKQNENQATVDADGPTQSFML 662
Query: 573 ----------------------------------------AKEIKETHGSKRKAKTFKDE 592
+K K G + +F++
Sbjct: 663 EDEDNEGDDLDDDANGDDVADMSLASDSELEVTFSYPSDKSKAKKGDSGKQPAGSSFQNP 722
Query: 593 EYFISSVPTNHHMEAGLSVRSDQGFGLNRLEA---AVLDLVADDSG-GLQKQKQVYHWDK 648
EYF+S PT+H M + G N +EA A +DL D++ G + + + WDK
Sbjct: 723 EYFMSYTPTSHSMAEERAYGVHSGSNSNFVEASRDATMDLSRDEANRGFAEPRSIMRWDK 782
Query: 649 RGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNA 707
R KKY+ N E S +V+ ESGAK+ A+ ++G + WK K L G A
Sbjct: 783 RHKKYVSRQNDEDGSKGALLVRGESGAKIAASFRSGRFDAWK----KSKRLGRMPRVGEA 838
Query: 708 EE---TTSVPGGRHLGGNNRKFRGGKNQ 732
E +++VP G ++FR K Q
Sbjct: 839 ETPGLSSTVPAG------GKRFRHNKQQ 860
>gi|367022384|ref|XP_003660477.1| hypothetical protein MYCTH_2298870 [Myceliophthora thermophila ATCC
42464]
gi|347007744|gb|AEO55232.1| hypothetical protein MYCTH_2298870 [Myceliophthora thermophila ATCC
42464]
Length = 926
Score = 512 bits (1318), Expect = e-142, Method: Compositional matrix adjust.
Identities = 330/829 (39%), Positives = 460/829 (55%), Gaps = 128/829 (15%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+++ L+ N+ RAI RKG+ VPTPIQRKT+PLIL DVV MARTGSGKTAAF++P
Sbjct: 89 KGGGFQAMGLNANLLRAITRKGFSVPTPIQRKTIPLILDKRDVVGMARTGSGKTAAFVIP 148
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M++ L H + G RALILSP+R+LALQTLK KELGR TDL+ LLVGGDS+E QF +
Sbjct: 149 MIEHLKAHSARVGARALILSPSRELALQTLKVVKELGRGTDLKTVLLVGGDSLEEQFGLM 208
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
A NPDIIIATPGR +H E+ + L S+ YVVFDEAD LF MGFA QL +IL L +R
Sbjct: 209 ATNPDIIIATPGRFLHLKVEM-SLDLSSIRYVVFDEADRLFEMGFATQLTEILHALPPSR 267
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI- 259
QTLLFSATLPS+L EFA+AGL++P LVRLD +TK+SPDL+ AFF+++ EK ALL+++
Sbjct: 268 QTLLFSATLPSSLVEFARAGLQEPSLVRLDAETKVSPDLESAFFSVKGGEKEGALLHILH 327
Query: 260 ---------------------------------REHISSDQQTLIFVSTKHHVEFLNVLF 286
R ++ T+IF +TKHHVE+L+ L
Sbjct: 328 NVIKMPLGPPKGAAEETQEPQSKKRKRGSDRPGRNEKPTEHSTIIFAATKHHVEYLSQLL 387
Query: 287 REEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPK 346
R G S YG +DQ ARKI V FR K+ L+VTDVAARGIDIP+L NVIN+DFPP+
Sbjct: 388 RHAGFSVSYVYGSLDQTARKIQVEIFRRGKSNILVVTDVAARGIDIPVLANVINYDFPPQ 447
Query: 347 PKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVM 406
PKIFVHRVGR ARAG+ G A++ V D+ YLLDL LFL + + +E D V+
Sbjct: 448 PKIFVHRVGRTARAGQRGWAYALVRESDLPYLLDLQLFLGRRLVVGQEVKEPSYAQDVVI 507
Query: 407 SKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLP 466
G I V + V++++ D+++L++ A +LY KT+
Sbjct: 508 ---------GTLIRAELEDNV-----EWVKKVLGDEDDISALKKVTIKAEKLYMKTRNSA 553
Query: 467 SKESIRRGKDL----PREGLHPMFKNVLEGGELMALAFSERLKAFRPKQTILE--AEGEA 520
S +S++R +++ LHP+F E + ++ +F+P++TI E +G++
Sbjct: 554 SSQSVKRAREIIASKSWTQLHPLFGESAASAEEARDSLLSKISSFKPQETIFEIGPQGKS 613
Query: 521 ARSKHLQ---------GP--SSQWVDVMKKKRAVHEKIINLVHQQRSSKSME----KEVE 565
A++K + GP + + D + + L QQ + E E
Sbjct: 614 AKNKAAEVMRNFRARVGPRRTEKKNDEDTEMADAGDSDDGLPAQQNGGEPKEHGEPDEDR 673
Query: 566 PEADSLMAK-----------EIKETHGSKRK--AKTFKDEEYFISSVPTNHHMEAGLSVR 612
P AD A+ E+ T +K K +F+D E F+S P S+
Sbjct: 674 PGADGPGAREEDDSDSESELEVTVTSSAKAKKGQTSFQDPEVFMSYTPRT------TSLA 727
Query: 613 SDQGFGLNR------LEA---AVLDLVADDSG---GLQKQKQVYHWDKRGKKYIKLNNGE 660
++ +G+N +EA A +DL D+ GL + ++ WDKR KY+ N E
Sbjct: 728 EERAYGVNSGGTAQFVEAARDAAMDLANDEGAKAFGLPTRPKM-RWDKRHSKYVARANDE 786
Query: 661 RVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNAEETTSV------ 713
S K+++ ESG K+ A+ ++G ++KW+ R++K L G G E+ T V
Sbjct: 787 DGSRGVKMIRGESGVKIAASFQSGRFEKWR-RANKLGRLPGV---GETEKPTLVRQFGSG 842
Query: 714 ---PGGRHLGGNNRKFRGGKNQQRSVPNAHVCSEIKDLDQVRKERQKKA 759
PGGRH K++Q P + +D VRK+R +A
Sbjct: 843 PGAPGGRHY----------KHKQEKAPKE--ADKYRDDYHVRKKRVAEA 879
>gi|302665674|ref|XP_003024446.1| hypothetical protein TRV_01409 [Trichophyton verrucosum HKI 0517]
gi|291188499|gb|EFE43835.1| hypothetical protein TRV_01409 [Trichophyton verrucosum HKI 0517]
Length = 940
Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust.
Identities = 322/882 (36%), Positives = 480/882 (54%), Gaps = 155/882 (17%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+++ L+P + +AI RKG+ VPTPIQRKT+PL+L DVV MARTGSGKTAAF++P
Sbjct: 90 KGGGFQAMGLNPTLLKAITRKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVIP 149
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M+++L H + G R LILSP+R+LALQTLK KELGR TDL+ LLVGGDS+E QF +
Sbjct: 150 MIEKLRNHSTKVGARGLILSPSRELALQTLKVVKELGRGTDLKCVLLVGGDSLEEQFGYM 209
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
A NPDIIIATPGR +H E+ ++ L S+ Y VFDEAD LF MGFA QL +IL L +R
Sbjct: 210 ASNPDIIIATPGRFLHLKVEM-NLDLSSIRYAVFDEADRLFEMGFAAQLTEILHALPTSR 268
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSATLP +L EFA+AGL++P L+RLD D+KISPDL+ AFFT++ +K ALL+++
Sbjct: 269 QTLLFSATLPKSLVEFARAGLQEPTLIRLDADSKISPDLQSAFFTVKSADKEGALLHILH 328
Query: 261 EHIS-----------------------------------------SDQQTLIFVSTKHHV 279
+ I ++ T++FV+TKHHV
Sbjct: 329 DLIKIPTGETEAGKLAKKEAQEGKQGTSKKRKRADMKGPGAHGTPTEHSTIVFVATKHHV 388
Query: 280 EFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI 339
E++ L R G S YG ++Q ARKI V RA + L+VTDVAARGIDIP+L NVI
Sbjct: 389 EYIANLLRHSGFAVSYAYGSLNQTARKIQVQNLRAGISNILVVTDVAARGIDIPVLANVI 448
Query: 340 NWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVL 399
N+DFP +PKI++HRVGR ARAG+ G ++S V D YL+DL LFL + +
Sbjct: 449 NYDFPSQPKIYIHRVGRTARAGQKGWSYSLVRDSDAPYLIDLQLFLGRRL---------- 498
Query: 400 LDMDGVMSKIDQAIAN--GETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFR 457
+M + AN + + G P+ ++ + V +++ D+ L+ +
Sbjct: 499 -----LMGRTATENANYAEDIVVGSLPRKSLESHCEYVDKLLSDDVDIEGLRSVSIRGEK 553
Query: 458 LYSKTKPLPSKESIRRGKDLPREG----LHPMFKNVLEGGELMALAFSERLKAFRPKQTI 513
LY +T+ S ES +R KD+ +HP+F + E+ R+ ++P++T+
Sbjct: 554 LYMRTRNSASAESAKRAKDIVAADAWVTIHPLFNDESSRLEVEREQMLARVGGYKPQETV 613
Query: 514 LEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEK--------IINLVHQQR---------- 555
E G+ + + + + V+VM+K R+V E+ NL Q
Sbjct: 614 FEVMGK----RGGKSGNEEAVEVMRKIRSVMERKKIRRELASQNLPLQNSKEEEIADDAG 669
Query: 556 ------SSKSMEKEVEPEADSLMAK----EIKETHGSKRKAK----------TFKDEEYF 595
S + ++ ++ + D +A+ E+ ++ + K++ TF++ EYF
Sbjct: 670 ENLGDMSDEDIDASIQDDPDMSLAEKSDLEVTFSYPKQSKSRSNVENGNQSNTFQNPEYF 729
Query: 596 ISSVPTNHHMEAGLSVRSDQGFGL--------NRLEA---AVLDLVADDSG-GLQKQKQV 643
+S PT+ +S+ D+G+G+ N +EA A +DL D+ GL +
Sbjct: 730 MSYTPTS------ISLTEDRGYGVHSGSNSNTNFVEASRSATMDLNGDEGARGLGGAGSI 783
Query: 644 YHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKE-RSHKKVYLKGA 701
WDKR KKY+ N E S K+V+ ESGAK+ A+ ++G + WK+ + ++ G
Sbjct: 784 KRWDKRHKKYVLRQNDEDGSKGEKLVRGESGAKIAASFRSGRFDSWKKGKRLGRMPRVGE 843
Query: 702 SNEGNAEETTSVPGGRHLGGNNR------KFRG--------GKNQQRSVPNA-------- 739
N T +PG ++ + K+RG G+ Q+ +A
Sbjct: 844 MENSNLGSTGGIPGRKYRHNKEQAPKAADKYRGDYEKMKKKGEAMQKRREDAGIPTYGGK 903
Query: 740 -HVCSEIKDLDQVRKERQKKADRIAFMKGKTQKGKKFSKNGK 780
+V SE+K+ + VRK R++ ++ + +K + SK GK
Sbjct: 904 KNVKSELKNSEDVRKARKQ-------LEKRREKNARPSKKGK 938
>gi|327304757|ref|XP_003237070.1| ATP-dependent RNA helicase DBP10 [Trichophyton rubrum CBS 118892]
gi|326460068|gb|EGD85521.1| ATP-dependent RNA helicase DBP10 [Trichophyton rubrum CBS 118892]
Length = 940
Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust.
Identities = 310/809 (38%), Positives = 447/809 (55%), Gaps = 129/809 (15%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+++ L+PN+ +AI RKG+ VPTPIQRKT+PL+L DVV MARTGSGKTAAF++P
Sbjct: 90 KGGGFQAMGLNPNLLKAITRKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVIP 149
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M+++ H + G R LILSP+R+LALQTLK KELGR TDL+ LLVGGDS+E QF +
Sbjct: 150 MIEKFRNHSTKVGARGLILSPSRELALQTLKVVKELGRGTDLKCVLLVGGDSLEEQFGYM 209
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
A NPDIIIATPGR +H E+ ++ L S+ Y VFDEAD LF MGFA QL +IL L +R
Sbjct: 210 ASNPDIIIATPGRFLHLKVEM-NLDLSSIRYAVFDEADRLFEMGFAAQLTEILHALPTSR 268
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSATLP +L EFA+AGL++P L+RLD D+KISPDL+ AFFT++ +K ALL+++
Sbjct: 269 QTLLFSATLPKSLVEFARAGLQEPTLIRLDADSKISPDLQSAFFTVKSADKEGALLHILH 328
Query: 261 EHIS-----------------------------------------SDQQTLIFVSTKHHV 279
+ I ++ T++FV+TKHHV
Sbjct: 329 DLIKIPTGETEAGKMAKKEAQEGKQGASKKRKRADMKGPSAHGTPTEHSTIVFVATKHHV 388
Query: 280 EFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI 339
E++ L R G S YG ++Q ARKI V FRA + L+VTDVAARGIDIP+L NVI
Sbjct: 389 EYIAHLLRHSGFAVSYAYGSLNQTARKIQVQNFRAGISNILVVTDVAARGIDIPVLANVI 448
Query: 340 NWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVL 399
N+DFP +PKI++HRVGR ARAG+ G ++S V D YL+DL LFL + + + E +
Sbjct: 449 NYDFPSQPKIYIHRVGRTARAGQKGWSYSLVRDSDAPYLIDLQLFLGRRLLMGRTATENV 508
Query: 400 LDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLY 459
+ + + G P+ ++ + V +++ D+ L+ +LY
Sbjct: 509 NYAEDI-------------VVGSLPRKSLESHCEYVDKLLSDDIDIEGLRSVSIRGEKLY 555
Query: 460 SKTKPLPSKESIRRGKDLPREG----LHPMFKNVLEGGELMALAFSERLKAFRPKQTILE 515
+T+ S ES +R KD+ +HP+F + E+ R+ ++P++T+ E
Sbjct: 556 MRTRNSASAESAKRAKDIVAADAWVTIHPLFNDESSRLEVEREQMLARVGGYKPQETVFE 615
Query: 516 AEGEAARSKHLQGPSSQWVDVMKKKRAVHE--KIINLVHQQRSSKSMEKE---------- 563
G+ + + + + V+VM+K R+V E KI + Q S KE
Sbjct: 616 IMGK----RGGKSGNEEAVEVMRKIRSVMERKKIRRELASQNSPLQNSKEGKIDDDAGGN 671
Query: 564 ------------VEPEADSLMAKE--IKETHGSKRKAK------------TFKDEEYFIS 597
+ + D +A+E ++ T +++K TF++ EYF+S
Sbjct: 672 LGDMSDEDIDASIHDDPDMSLAEESDLEVTFSYPKQSKSRSNVENGNQSNTFQNPEYFMS 731
Query: 598 SVPTNHHMEAGLSVRSDQGFGL--------NRLEA---AVLDLVADDSG-GLQKQKQVYH 645
PT+ +S+ D+G+G+ N +EA A +DL D+ GL +
Sbjct: 732 YTPTS------ISLTEDRGYGVHSGSNSNTNFVEASRSATMDLNGDEGARGLGGVGSIKR 785
Query: 646 WDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKE-RSHKKVYLKGASN 703
WDKR KKY+ N E S K+V+ ESGAK+ A+ ++G + WK+ + ++ G
Sbjct: 786 WDKRHKKYVLRQNDEDGSKGEKLVRGESGAKIAASFRSGRFDSWKKGKRLGRMPRVGEME 845
Query: 704 EGNAEETTSVPGGRHLGGNNRKFRGGKNQ 732
N T +PG RK+R K Q
Sbjct: 846 NSNLGNTGGIPG--------RKYRHNKEQ 866
>gi|400596455|gb|EJP64229.1| DEAD/DEAH box helicase [Beauveria bassiana ARSEF 2860]
Length = 895
Score = 510 bits (1314), Expect = e-141, Method: Compositional matrix adjust.
Identities = 314/804 (39%), Positives = 448/804 (55%), Gaps = 102/804 (12%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+++ ++ + +AI RKG+ VPTPIQRKT+PL+L DVV MARTGSGKTAAF++P
Sbjct: 83 KGGGFQAMGINATLLKAIARKGFSVPTPIQRKTIPLVLDRKDVVGMARTGSGKTAAFVIP 142
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M++RL H + G RALI+SP+R+LA+QTLK KEL + TDL+ LLVGGDS+E QF +
Sbjct: 143 MIERLRAHSAKFGSRALIMSPSRELAIQTLKVVKELSKGTDLKAVLLVGGDSLEEQFGFM 202
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
A NPDI+IATPGR +H E++ + + S++YVVFDEAD LF MGFA QL +IL L +R
Sbjct: 203 AANPDIVIATPGRFLHLKVEMK-LDISSIKYVVFDEADRLFEMGFAAQLTEILHALPLSR 261
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSATLP++L EFA+AGL+DP LVRLD DTK+SPDL+ A+F+++ +EK +LL+++
Sbjct: 262 QTLLFSATLPTSLVEFARAGLQDPSLVRLDADTKVSPDLQSAYFSIKGDEKEGSLLHILH 321
Query: 261 EHIS-----------------------------SDQQTLIFVSTKHHVEFLNVLFREEGL 291
+ I + T++F +TKHHVE++ L + G
Sbjct: 322 DVIKVPVGEPENNDDTGKDSKKRKRGPDGPARPTQHSTIVFTATKHHVEYIANLLQWAGF 381
Query: 292 EPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFV 351
S YG +DQ AR+I V FR KT L+VTDVAARGIDIP+L NVIN+DFP +PKIFV
Sbjct: 382 AVSHVYGSLDQTARRIQVEDFRHGKTNILVVTDVAARGIDIPVLANVINYDFPSQPKIFV 441
Query: 352 HRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQ 411
HRVGR ARAG+ G ++S V D YLLDL LFL K + +E+ D
Sbjct: 442 HRVGRTARAGQRGWSYSLVRDTDAPYLLDLQLFLGKQLVIGQEKEKPSYADD-------- 493
Query: 412 AIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESI 471
+ G + ++ + +I + D+++LQ+ A RLY KT+ S +S
Sbjct: 494 ------VVVGSLERNSLEEHVEWFNRVIHDNDDISALQKVSIKAERLYLKTRNSASSQSA 547
Query: 472 RRGKDLPREG----LHPMFKNVLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQ 527
+R +++ G LHP+F N ++ E ++ FRP +TI E G + ++
Sbjct: 548 KRAREVVASGAWVQLHPLFGNDVDHDEKSRAEMMAKISGFRPNETIFEI-GRSDKA---- 602
Query: 528 GPSSQWVDVMKKKR----------------------AVHEKIINLVHQQRSSKSMEKEVE 565
S++ DVMK+ R V +N + V+
Sbjct: 603 --SNEAADVMKQLRKKITPRRRQEAEAEAEEEIDDDEVGAPAMNDFDDATDDDTGLGAVD 660
Query: 566 PEADSLMAKEIKETHGSKRKAKTFKDEEYFISSVP--TNHHMEAGLSVRSDQGFGLNRLE 623
++D + + SK+ ++D E F+S P N E G V S G G + +E
Sbjct: 661 EDSDEDLEVTVSNAGKSKKDRDDWRDSEIFMSYTPRTVNAAEERGYGVHSG-GAGSSFVE 719
Query: 624 AA---VLDLVADDSGGL--QKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVK 678
AA +DL D+S + KQ WDK+ KKY+ +N E S K+V ESG K+
Sbjct: 720 AARDVTMDLGNDESAKSFGEANKQRLRWDKKSKKYVSRHNDEDGSKGAKLVTGESGVKIA 779
Query: 679 AT-KTGIYKKWKERSHK--KVYLKGASNEGNAEETTSVPGGRHLGGNNRKFRGGKNQQRS 735
A+ ++G Y KW+ ++H+ + G + A S G R+ K++Q
Sbjct: 780 ASFQSGRYDKWR-KAHRIGRTQRVGEDEKAGAAALLSQGGVRY-----------KHKQEK 827
Query: 736 VPNAHVCSEIKDLDQVRKERQKKA 759
P A + +D QVRK+R +A
Sbjct: 828 APKA--ADKYRDDYQVRKKRVDEA 849
>gi|154286484|ref|XP_001544037.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|160380603|sp|A6QUM7.1|DBP10_AJECN RecName: Full=ATP-dependent RNA helicase DBP10
gi|150407678|gb|EDN03219.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 900
Score = 510 bits (1314), Expect = e-141, Method: Compositional matrix adjust.
Identities = 297/724 (41%), Positives = 414/724 (57%), Gaps = 75/724 (10%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+SL L+ + +AI RKG+ VPTPIQRKT+PL+L DVV MARTGSGKTAAF++P
Sbjct: 84 KGGGFQSLGLNAALLKAITRKGFSVPTPIQRKTIPLVLDDQDVVGMARTGSGKTAAFVIP 143
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M+++L H + G RALILSP+R+LALQTLK KELGR TDL+ LLVGGDS+E QFE +
Sbjct: 144 MIEKLKSHSAKFGSRALILSPSRELALQTLKVVKELGRGTDLKSVLLVGGDSLEEQFEYM 203
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
A NPDIIIATPGR +H E+ + L S+ YVVFDEAD LF MGFA QL +IL L +R
Sbjct: 204 ASNPDIIIATPGRFLHLKVEMS-LDLSSIRYVVFDEADRLFEMGFATQLTEILHGLPSSR 262
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSATLP +L EFA+AGL++P L+RLD ++KISPDL+ AFFT++ EK ALL+++
Sbjct: 263 QTLLFSATLPKSLVEFARAGLQEPILIRLDAESKISPDLQNAFFTVKSSEKEGALLHVLH 322
Query: 261 EHIS------------------------------------SDQQTLIFVSTKHHVEFLNV 284
E I ++ T+IF +TKHHV++L
Sbjct: 323 EVIKIPTGETEALKRAKEEVKHSKKRKRSEVTSNSHKESPTEHSTIIFTATKHHVDYLTS 382
Query: 285 LFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFP 344
+ R G S YG +DQ ARKI V FR T L+VTDVAARGIDIP+L NVIN+DFP
Sbjct: 383 ILRTSGFAVSYAYGSLDQTARKIEVQNFRDGITHILVVTDVAARGIDIPILSNVINYDFP 442
Query: 345 PKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDG 404
+PKIFVHRVGR ARAG+TG ++S + D YLLDL LFL +P+ + L +
Sbjct: 443 SQPKIFVHRVGRTARAGKTGWSYSLIRESDTPYLLDLQLFLGRPLILGRGSGQQLNYAEN 502
Query: 405 VMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKP 464
V + G P+ + ++ + +++D D+ + +LY +T+
Sbjct: 503 V-------------VVGSLPRDKVARYTEWMTKLLDEDVDIELQREVAIKGEKLYMRTRN 549
Query: 465 LPSKESIRRGKDLPREG----LHPMFKNVLEGGELMALAFSERLKAFRPKQTILEAEGEA 520
S ES +R K + +HP+F + E R+ ++P++TI E G
Sbjct: 550 SASGESAKRAKAVVESAEWMMVHPLFNDESSRLEEQREKMLARVGGYKPQETIFEISGRR 609
Query: 521 ARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKSMEKEVE-----PEADSLMAKE 575
+ H S D + R + N + S + + E+E P++ +K+
Sbjct: 610 GANHHPPDDS----DDANELRDFDGENDNAIAADNMSLASDSELEVTFSYPQSGKSNSKK 665
Query: 576 IKETHGSKRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEA---AVLDLVAD 632
H + R ++F + EYF+S P ++ + + G N +E+ A +DL D
Sbjct: 666 -DTNHPNLR--ESFHNPEYFMSYTPASNSLAEDRAYGVHSGSNTNFVESSRIATMDLAGD 722
Query: 633 DSG--GLQKQKQVYHWDKRGKKYIKLNNGERVSASGK---VVKTESGAKVKAT-KTGIYK 686
+S G + + + WDKR KKY+ N E S GK +V+ ESG K+ A+ ++G +
Sbjct: 723 ESTSRGFGEPRSIMRWDKRQKKYVSRRNDEDGSKGGKSDLLVRGESGVKIAASFRSGRFD 782
Query: 687 KWKE 690
WK+
Sbjct: 783 AWKK 786
>gi|239613976|gb|EEQ90963.1| ATP-dependent RNA helicase DBP10 [Ajellomyces dermatitidis ER-3]
Length = 945
Score = 510 bits (1314), Expect = e-141, Method: Compositional matrix adjust.
Identities = 312/813 (38%), Positives = 435/813 (53%), Gaps = 123/813 (15%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+S+ L+ + +AI RKG+ VPTPIQRKT+PL+L DVV MARTGSGKTAAF++P
Sbjct: 84 KGGGFQSMGLNATLLKAITRKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVIP 143
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M+++L H + G RALILSP+R+LALQTLK KELGR TDL+ LLVGGDS+E QFE +
Sbjct: 144 MIEKLKNHSAKFGSRALILSPSRELALQTLKVVKELGRGTDLKSVLLVGGDSLEEQFEYM 203
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
A NPDIIIATPGR +H E+ + L S+ YVVFDEAD LF MGFA QL +IL L +R
Sbjct: 204 AGNPDIIIATPGRFLHLKVEMS-LDLSSIRYVVFDEADRLFEMGFAAQLTEILHGLPSSR 262
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSATLP +L EFA+AGL++P L+RLD ++KISPDL+ AFFT++ EK ALL+++
Sbjct: 263 QTLLFSATLPKSLVEFARAGLQEPTLIRLDAESKISPDLQNAFFTVKSSEKEGALLHLLH 322
Query: 261 EHIS------------------------------------SDQQTLIFVSTKHHVEFLNV 284
E I ++ T+IF +TKHHV++L
Sbjct: 323 EVIKIPTGETEAHKRAKEEAKNPKKRKRSEFASNSHKESPTEHSTIIFTATKHHVDYLVS 382
Query: 285 LFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFP 344
+ R G S YG +DQ ARKI V FR+ T L+VTDVAARGIDIP+L NVIN+DFP
Sbjct: 383 ILRISGFAVSYAYGSLDQTARKIEVQNFRSGITHILVVTDVAARGIDIPILSNVINYDFP 442
Query: 345 PKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDG 404
+ KIFVHRVGR ARAG+TG ++S + D YLLDL LFL +P+ + L +
Sbjct: 443 SQAKIFVHRVGRTARAGKTGWSYSLIRESDAPYLLDLQLFLGRPLLLGRGSGQQLNYTED 502
Query: 405 VMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKP 464
V + G P+ + ++ V +++D D+ + +LY +T+
Sbjct: 503 V-------------VVGSLPRDKVSRYTEWVSKLLDEDVDVELQREVAMKGEKLYMRTRN 549
Query: 465 LPSKESIRRGKDLPREG----LHPMFKNVLEGGELMALAFSERLKAFRPKQTILEAEGEA 520
S ES +R KD+ +HP+F + E R+ ++P++TI E G
Sbjct: 550 SASSESAKRAKDVVESDEWLMVHPIFSDESSRLEEEREKMLARVGGYKPQETIFEIGGRR 609
Query: 521 ARSKHLQGPSSQWVDVMKK-------KRAVHEKIINLVHQQRSSKSMEKEVEPEADSLMA 573
+ + +D+M+K KRA E I H S + + + DS
Sbjct: 610 GGKNG----NDEAIDMMRKMRSTFASKRARKESAIKSAHLGNSGGAANDNLPNDNDSDDD 665
Query: 574 -------------------------------------KEIKETHGSKRKAKTFKDEEYFI 596
++K + ++F + EYF+
Sbjct: 666 GLADLGDENDNAITADNMSLASDSELEVTFSYPQSGKSKLKTDANDSKPGESFHNPEYFM 725
Query: 597 SSVPTNHHMEAGLSVRSDQGFGLNRLEA---AVLDLVADDSG--GLQKQKQVYHWDKRGK 651
S P ++ + + G N +EA A +DL D+S G + + + WDKR K
Sbjct: 726 SYTPASNSLAEDRAYGVHSGSNTNFVEASRGATMDLAGDESAARGFGEPRSIMRWDKRQK 785
Query: 652 KYIKLNNGERVSASGK---VVKTESGAKVKAT-KTGIYKKWK--ERSHKKVYLKGASNEG 705
KY+ N E S GK +V+ ESG K+ A+ ++G + WK +R + + A N G
Sbjct: 786 KYVSRRNDEDGSKGGKGDLLVRGESGIKIAASFRSGRFDAWKKGKRIGRMPRVGEAENPG 845
Query: 706 NAEETTSVPGGRHLGGNNRKFRGGKNQQRSVPN 738
A + +PGG +K+R K Q P+
Sbjct: 846 LA---SGMPGG-------KKYRHRKEQAPKNPD 868
>gi|332025035|gb|EGI65222.1| ATP-dependent RNA helicase DDX54 [Acromyrmex echinatior]
Length = 776
Score = 510 bits (1313), Expect = e-141, Method: Compositional matrix adjust.
Identities = 315/788 (39%), Positives = 460/788 (58%), Gaps = 89/788 (11%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+S+ LS + + I ++GYK+PTPIQRKT+PL L G D+VAMARTGSGKTA FL+P+ ++
Sbjct: 38 FQSMALSFPILKGILKRGYKIPTPIQRKTIPLALEGRDIVAMARTGSGKTACFLIPLFEK 97
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L + G RALILSPTR+LALQTLKF KELGR+T L+ ++++GGDSM++QF + NP
Sbjct: 98 LKVRQAKTGARALILSPTRELALQTLKFIKELGRFTGLKSAVILGGDSMDNQFSAIHGNP 157
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
DII+ATPGR +H E+ D+ LK++EY+VFDEAD LF MGF EQ+ +I+ +L E+RQTLL
Sbjct: 158 DIIVATPGRFLHICVEM-DLQLKNIEYIVFDEADRLFEMGFGEQIQEIVNRLPESRQTLL 216
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSATLP L +F KAGL DP L+RLDV++K+ L L+F T R EEK A LL +++ I
Sbjct: 217 FSATLPKILVDFTKAGLSDPVLLRLDVESKLPEGLTLSFITCRPEEKLAVLLSLLKRIIK 276
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
D Q +IF T HHVE+++ + + + + Y ++D ARKI+ ++F+ K LIVTD
Sbjct: 277 PDSQIIIFAETMHHVEYIHQILDKADISNTFIYSNLDPSARKINAAKFQIGKVRVLIVTD 336
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
VAARGIDIP LD VIN++FP K K+FVHRVGR ARAGR GTA++ V+S++ YLLDLHLF
Sbjct: 337 VAARGIDIPHLDCVINFNFPAKSKLFVHRVGRCARAGRVGTAYNIVSSDEYPYLLDLHLF 396
Query: 385 LSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDS--- 441
L +P+ P+ E D+++ E G+ PQ +V + + E+I+
Sbjct: 397 LGRPLTIVPTTE------------TDESM---EYAVGKLPQA---MVEEELAELINWHNI 438
Query: 442 SADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDL--PREGLHPMFKNVLEGGELMALA 499
S DL ++++ C NA++ Y +++P S ES++R K+L G+ P + + +
Sbjct: 439 STDLINMRKVCNNAYQQYVRSRPNASAESVKRIKELRINEAGILPQYT---DASHINTAD 495
Query: 500 FSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVH-EKIINLVHQQRSSK 558
R+K +RP+ TI E G S Q VMK KR H E I+N + K
Sbjct: 496 IISRMKNYRPQGTIFEI-GTKTNSTDYQ--------VMKTKRIFHKENILNFRKKMEEHK 546
Query: 559 ----SMEKEVEPEADSLMAKEIKETHGS--------------------KRKAKTFKDEEY 594
+M E+ + + L + +E + + K+K T +DEEY
Sbjct: 547 IDKINMASELSQKVN-LPSSNTEEINAAFRTVVVPKKRTSDDLYKLSKKKKRLTKRDEEY 605
Query: 595 FISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYI 654
+I + H E GL+V + F + A +DL AD+ G Q Q+ WD++ KK +
Sbjct: 606 YIPYSAPDKHTEDGLAVNT---FA-TEADKAQMDLTADNEDGQHLQMQLKKWDRKKKKMV 661
Query: 655 KLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNAEETTS- 712
+ ER K ++TESGA + AT KT Y WKE+S K+ ++++ E + S
Sbjct: 662 TV---ER-DPKAKKIRTESGAWIPATYKTNRYNVWKEKS--KIDENDSADDSEEEPSQSK 715
Query: 713 ---VPGGRHLGGNNRKFRGGKNQQRSVPNAHVCSEIKDLDQVRKER---QKKADRIAFMK 766
H +N+K + + +E+K +Q+ K R +KK + +
Sbjct: 716 NLRTTANTHWARHNQKLKD---------KIKIKNELKRPEQILKARKLLEKKRQKNGRKR 766
Query: 767 GKTQKGKK 774
K QK ++
Sbjct: 767 NKGQKNRR 774
>gi|145240463|ref|XP_001392878.1| ATP-dependent RNA helicase DBP10 [Aspergillus niger CBS 513.88]
gi|134034062|sp|A2QRY2.1|DBP10_ASPNC RecName: Full=ATP-dependent RNA helicase dbp10
gi|134077396|emb|CAK40010.1| unnamed protein product [Aspergillus niger]
Length = 932
Score = 510 bits (1313), Expect = e-141, Method: Compositional matrix adjust.
Identities = 322/828 (38%), Positives = 444/828 (53%), Gaps = 117/828 (14%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+++ L+ N+ +AI RKG+ VPTPIQRKT+P+I+ DVV MARTGSGKTAAF++P
Sbjct: 88 KGGGFQAMGLNANLLKAITRKGFSVPTPIQRKTIPVIMEDQDVVGMARTGSGKTAAFVIP 147
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M+Q+L H Q G R LILSP+R+LALQTLK KELG+ TDL+ LLVGGDS+E QF +
Sbjct: 148 MIQKLKSHSTQVGARGLILSPSRELALQTLKVVKELGKGTDLKAVLLVGGDSLEEQFSMM 207
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
A NPDI+IATPGR +H E+ ++ L S+ YVVFDEAD LF MGFA QL +IL L R
Sbjct: 208 AGNPDIVIATPGRFLHLKVEM-NLDLSSIRYVVFDEADRLFEMGFAAQLTEILHGLPSTR 266
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSATLP +L EFA+AGL++P LVRLD ++KISPDL+ AFF+++ +K AL+Y++
Sbjct: 267 QTLLFSATLPKSLVEFARAGLQEPTLVRLDTESKISPDLQNAFFSVKSGDKEGALMYILH 326
Query: 261 EHIS------------------------------------------SDQQTLIFVSTKHH 278
I + T+IF +TKHH
Sbjct: 327 NVIKMPTGPTEAAQRMKEENASGKSSKFSKKRKRSDDKAINFKESPTKHSTIIFAATKHH 386
Query: 279 VEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNV 338
V++L L E G S YG +DQ ARKI V FR + L+VTDVAARGIDIP+L NV
Sbjct: 387 VDYLYSLLNEAGFATSYAYGSLDQTARKIQVHNFRTGISNILVVTDVAARGIDIPILANV 446
Query: 339 INWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEV 398
IN+DFP + KIFVHRVGR ARAGRTG ++S V D YLLDL LFL + + V
Sbjct: 447 INYDFPSQAKIFVHRVGRTARAGRTGWSYSLVRDSDAPYLLDLQLFLGRRL--------V 498
Query: 399 LLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRL 458
L G DQ + + G FP+ + + V +++D + D+ + + + +L
Sbjct: 499 LGREHG-----DQVNFAEDVVVGGFPRDGLSQSCEWVNKVLDDTVDIAAQRSVASKGEKL 553
Query: 459 YSKTKPLPSKESIRRGKDLPRE----GLHPMFKNVLEGGELMALAFSERLKAFRPKQTIL 514
Y +T+ S ES +R K++ LHP+F + E R+ +RP +TI
Sbjct: 554 YLRTRNAASLESAKRSKEVVSSDNWTALHPLFNDETSQLEAEREKMLARIGGYRPNETIF 613
Query: 515 EA--------EGEAA-------------RSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQ 553
E E E A + K Q S++VD ++ +
Sbjct: 614 EVNNRRSGKPENEEALTTIKRVRTTLDSKKKRAQEAKSEFVDDDVPTKSGDADADDAEDG 673
Query: 554 QRSSKSMEKEVEPEADSLMAKEIKE------THGSKRKAK------TFKDEEYFISSVPT 601
S + E + SL ++ E S +KAK +F++ EYF+S P
Sbjct: 674 AFSDEDEAGEGAADNMSLASESDLEVTFSSYNQPSNKKAKKEASATSFQNPEYFMSYTPN 733
Query: 602 NHHMEAGLSVRSDQGFGLNRLEA---AVLDLVADD-SGGLQKQKQVYHWDKRGKKYIKLN 657
N +M + G N +A A +DL+ D+ S G + + + WDKR KKY+
Sbjct: 734 NTNMAEDRAYGVHSGTNANFAQASRDAAMDLLGDEGSRGFGEPRTMMRWDKRHKKYVSRQ 793
Query: 658 NGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNAEETTSVPGG 716
N E S ++V+ ESGAK+ A+ ++G + WK K L G AE PG
Sbjct: 794 NDEDGSKGTRLVRGESGAKIAASFRSGRFDAWK----KGKRLTRLPRVGEAE----TPG- 844
Query: 717 RHLGGNNRKFRGGKN--------QQRSVPNAHVCSEIKDLDQVRKERQ 756
LG + +RGG+ +R+ P ++K ++ KERQ
Sbjct: 845 --LGADLNHYRGGRRFKHNKEQAPKRADPLRGDYDKMKKKNEAAKERQ 890
>gi|67516603|ref|XP_658187.1| hypothetical protein AN0583.2 [Aspergillus nidulans FGSC A4]
gi|74681494|sp|Q5BFU7.1|DBP10_EMENI RecName: Full=ATP-dependent RNA helicase dbp10
gi|40747526|gb|EAA66682.1| hypothetical protein AN0583.2 [Aspergillus nidulans FGSC A4]
gi|259489152|tpe|CBF89188.1| TPA: ATP-dependent RNA helicase dbp10 (EC 3.6.1.-)
[Source:UniProtKB/Swiss-Prot;Acc:Q5BFU7] [Aspergillus
nidulans FGSC A4]
Length = 936
Score = 510 bits (1313), Expect = e-141, Method: Compositional matrix adjust.
Identities = 300/755 (39%), Positives = 415/755 (54%), Gaps = 100/755 (13%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+++ L+ N+ +AI RKG+ VPTPIQRKT+P+I+ DVV MARTGSGKTAAF++P
Sbjct: 89 KGGGFQAMGLNANLLKAIARKGFSVPTPIQRKTIPVIMEDQDVVGMARTGSGKTAAFVIP 148
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M+++L H + G R LILSP+R+LALQTLK KELG+ TDL+ LLVGGDS+E QF +
Sbjct: 149 MIEKLKSHSTKFGARGLILSPSRELALQTLKVVKELGKGTDLKSVLLVGGDSLEEQFGMM 208
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
A NPDI+IATPGR +H E+ ++ L S++YVVFDEAD LF MGFA QL +IL L R
Sbjct: 209 AGNPDIVIATPGRFLHLKVEM-NLDLSSIKYVVFDEADRLFEMGFAAQLTEILHGLPSTR 267
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSATLP +L EFA+AGL+DP LVRLD ++KISPDL+ AFF+++ EK ALLY++
Sbjct: 268 QTLLFSATLPKSLVEFARAGLQDPTLVRLDTESKISPDLQNAFFSVKSAEKEGALLYILN 327
Query: 261 EHIS----------------------------------------SDQQTLIFVSTKHHVE 280
E I + T++F +TKHHV+
Sbjct: 328 EVIKMPTGPTEASLRLKEKGPEDSKNKKRKRAEMERAVNMKESPTKHSTIVFAATKHHVD 387
Query: 281 FLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN 340
+L L RE G S YG +DQ ARKI V FR + L+VTDVAARGIDIP+L NVIN
Sbjct: 388 YLYSLLREAGFAVSYVYGSLDQTARKIQVQNFRTGISNILVVTDVAARGIDIPILANVIN 447
Query: 341 WDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLL 400
+DFP +PKIFVHRVGR ARAGR G ++S V D YLLDL LFL + + ++V
Sbjct: 448 YDFPSQPKIFVHRVGRTARAGRKGWSYSLVRDADAPYLLDLQLFLGRKLVLGRESDQVNF 507
Query: 401 DMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYS 460
D G P+ + + V ++D AD+ + + T +LY
Sbjct: 508 AED--------------VAVGSLPRDGLSQTCEWVSRVLDDDADIFAQRAVSTKGEKLYL 553
Query: 461 KTKPLPSKESIRRGKDLPRE----GLHPMFKNVLEGGELMALAFSERLKAFRPKQTILEA 516
+T+ S ES +R K + +HP+F++ E R+ +RP++TI E
Sbjct: 554 RTRNAASAESAKRAKQVVTSDNWTAVHPLFQDEASNLEAEREKMLARIGGYRPQETIFEV 613
Query: 517 EGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQ----QRSSKSMEKEVE------- 565
+ + +D +K+ R+ E Q + ++ + EV+
Sbjct: 614 QNRRGGKGGKASEPDEALDSIKRVRSTLEAKKKQRAQAEELEATTNTDGAEVDGDAFSDL 673
Query: 566 -------PEADSLMAKEIKE----THGSKRKAKT--------------FKDEEYFISSVP 600
P+ SL ++ E ++ + KA F++ EYF+S P
Sbjct: 674 EGDNANIPDNMSLASESDLEVTFSSYNTTDKASKSNSNSKSDSTPTTLFQNPEYFMSYTP 733
Query: 601 TNHHMEAGLSVRSDQGFGLNRLEA---AVLDLVADDSG-GLQKQKQVYHWDKRGKKYIKL 656
N + + G N A A +DL AD+ G G + + + WDKR KKY+
Sbjct: 734 ANTSLAEDRAYGVHSGTNANFASATRNATMDLQADEGGKGFGEPRTLMRWDKRHKKYVSR 793
Query: 657 NNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKE 690
N E S K+V+ ESGAK+ AT ++G + WK+
Sbjct: 794 QNDEDGSKGTKLVRGESGAKIAATFRSGRFDAWKK 828
>gi|350629908|gb|EHA18281.1| hypothetical protein ASPNIDRAFT_38116 [Aspergillus niger ATCC 1015]
Length = 932
Score = 509 bits (1311), Expect = e-141, Method: Compositional matrix adjust.
Identities = 321/828 (38%), Positives = 444/828 (53%), Gaps = 117/828 (14%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+++ L+ N+ +AI RKG+ VPTPIQRKT+P+++ DVV MARTGSGKTAAF++P
Sbjct: 88 KGGGFQAMGLNANLLKAITRKGFSVPTPIQRKTIPVVMEDQDVVGMARTGSGKTAAFVIP 147
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M+Q+L H Q G R LILSP+R+LALQTLK KELG+ TDL+ LLVGGDS+E QF +
Sbjct: 148 MIQKLKSHSTQVGARGLILSPSRELALQTLKVVKELGKGTDLKAVLLVGGDSLEEQFSMM 207
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
A NPDI+IATPGR +H E+ ++ L S+ YVVFDEAD LF MGFA QL +IL L R
Sbjct: 208 AGNPDIVIATPGRFLHLKVEM-NLDLSSIRYVVFDEADRLFEMGFAAQLTEILHGLPSTR 266
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSATLP +L EFA+AGL++P LVRLD ++KISPDL+ AFF+++ +K AL+Y++
Sbjct: 267 QTLLFSATLPKSLVEFARAGLQEPTLVRLDTESKISPDLQNAFFSVKSGDKEGALMYILH 326
Query: 261 EHIS------------------------------------------SDQQTLIFVSTKHH 278
I + T+IF +TKHH
Sbjct: 327 NVIKMPTGPTEAAQRMKEENASGKSSKFSKKRKRSDDKAINFKESPTKHSTIIFAATKHH 386
Query: 279 VEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNV 338
V++L L E G S YG +DQ ARKI V FR + L+VTDVAARGIDIP+L NV
Sbjct: 387 VDYLYSLLNEAGFATSYAYGSLDQTARKIQVHNFRTGISNILVVTDVAARGIDIPILANV 446
Query: 339 INWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEV 398
IN+DFP + KIFVHRVGR ARAGRTG ++S V D YLLDL LFL + + V
Sbjct: 447 INYDFPSQAKIFVHRVGRTARAGRTGWSYSLVRDSDAPYLLDLQLFLGRRL--------V 498
Query: 399 LLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRL 458
L G DQ + + G FP+ + + V +++D + D+ + + + +L
Sbjct: 499 LGREHG-----DQVNFAEDVVVGGFPRDGLSQSCEWVNKVLDDTVDIAAQRSVASKGEKL 553
Query: 459 YSKTKPLPSKESIRRGKDLPRE----GLHPMFKNVLEGGELMALAFSERLKAFRPKQTIL 514
Y +T+ S ES +R K++ LHP+F + E R+ +RP +TI
Sbjct: 554 YLRTRNAASLESAKRSKEVVSSDNWTALHPLFNDETSQLEAEREKMLARIGGYRPNETIF 613
Query: 515 EA--------EGEAA-------------RSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQ 553
E E E A + K Q S++VD ++ +
Sbjct: 614 EVNNRRSGKPENEEALTTIKRVRTTLDSKKKRAQEAKSEFVDDDVPTKSGDADADDAEDG 673
Query: 554 QRSSKSMEKEVEPEADSLMAKEIKE------THGSKRKAK------TFKDEEYFISSVPT 601
S + E + SL ++ E S +KAK +F++ EYF+S P
Sbjct: 674 AFSDEDEAGEGAADNMSLASESDLEVTFSSYNQPSNKKAKKEAGATSFQNPEYFMSYTPN 733
Query: 602 NHHMEAGLSVRSDQGFGLNRLEA---AVLDLVADD-SGGLQKQKQVYHWDKRGKKYIKLN 657
N +M + G N +A A +DL+ D+ S G + + + WDKR KKY+
Sbjct: 734 NTNMAEDRAYGVHSGTNANFAQASRDAAMDLLGDEGSRGFGEPRTMMRWDKRHKKYVSRQ 793
Query: 658 NGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNAEETTSVPGG 716
N E S ++V+ ESGAK+ A+ ++G + WK K L G AE PG
Sbjct: 794 NDEDGSKGTRLVRGESGAKIAASFRSGRFDAWK----KGKRLTRLPRVGEAE----TPG- 844
Query: 717 RHLGGNNRKFRGGKN--------QQRSVPNAHVCSEIKDLDQVRKERQ 756
LG + +RGG+ +R+ P ++K ++ KERQ
Sbjct: 845 --LGADLNHYRGGRRFKHNKEQAPKRADPLRGDYDKMKKKNEAAKERQ 890
>gi|327353326|gb|EGE82183.1| ATP-dependent RNA helicase DBP10 [Ajellomyces dermatitidis ATCC
18188]
Length = 945
Score = 509 bits (1310), Expect = e-141, Method: Compositional matrix adjust.
Identities = 313/813 (38%), Positives = 436/813 (53%), Gaps = 123/813 (15%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+S+ L+ + +AI RKG+ VPTPIQRKT+PL+L DVV MARTGSGKTAAF++P
Sbjct: 84 KGGGFQSMGLNATLLKAITRKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVIP 143
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M+++L H + G RALILSP+R+LALQTLK KELGR TDL+ LLVGGDS+E QFE +
Sbjct: 144 MIEKLKNHSAKFGSRALILSPSRELALQTLKVVKELGRGTDLKSVLLVGGDSLEEQFEYM 203
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
A NPDIIIATPGR +H E+ + L S+ YVVFDEAD LF MGFA QL +IL L +R
Sbjct: 204 AGNPDIIIATPGRFLHLKVEMS-LDLSSIRYVVFDEADRLFEMGFAAQLTEILHGLPSSR 262
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSATLP +L EFA+AGL++P L+RLD ++KISPDL+ AFFT++ EK ALL+++
Sbjct: 263 QTLLFSATLPKSLVEFARAGLQEPTLIRLDAESKISPDLQNAFFTVKSSEKEGALLHLLH 322
Query: 261 EHIS------------------------------------SDQQTLIFVSTKHHVEFLNV 284
E I ++ T+IF +TKHHV++L
Sbjct: 323 EVIKIPTGETEAHKRAKEEAKNPKKRKRSEFASNSHKESPTEHSTIIFTATKHHVDYLVS 382
Query: 285 LFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFP 344
+ R G S YG +DQ ARKI V FR+ T L+VTDVAARGIDIP+L NVIN+DFP
Sbjct: 383 ILRISGFAVSYAYGSLDQTARKIEVQNFRSGITHILVVTDVAARGIDIPILFNVINYDFP 442
Query: 345 PKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDG 404
+ KIFVHRVGR ARAG+TG ++S + D YLLDL LFL +P+ +L G
Sbjct: 443 SQAKIFVHRVGRTARAGKTGWSYSLIRESDAPYLLDLQLFLGRPL--------ILGRGSG 494
Query: 405 VMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKP 464
Q + + G P+ + ++ V +++D D+ + +LY +T+
Sbjct: 495 -----QQLNYTEDVVVGSLPRDKVSRYTEWVSKLLDEDVDVELQREVAMKGEKLYMRTRN 549
Query: 465 LPSKESIRRGKDLPREG----LHPMFKNVLEGGELMALAFSERLKAFRPKQTILEAEGEA 520
S ES +R KD+ +HP+F + E R+ ++P++TI E G
Sbjct: 550 SASSESAKRAKDVVESDEWLMVHPIFSDESSRLEEEREKMLARVGGYKPQETIFEIGGRR 609
Query: 521 ARSKHLQGPSSQWVDVMKK-------KRAVHEKIINLVHQQRSSKSMEKEVEPEADSLMA 573
+ + +D+M+K KRA E I H S + + + DS
Sbjct: 610 GGKNG----NDEAIDMMRKMRSTFASKRARKESAIKSAHLGNSGGAANDNLPNDNDSDDD 665
Query: 574 -------------------------------------KEIKETHGSKRKAKTFKDEEYFI 596
++K + ++F + EYF+
Sbjct: 666 GLADLGDENDNAITADNMSLASDSELEVTFSYPQSGKSKLKTDANDSKPGESFHNPEYFM 725
Query: 597 SSVPTNHHMEAGLSVRSDQGFGLNRLEA---AVLDLVADDSG--GLQKQKQVYHWDKRGK 651
S P ++ + + G N +EA A +DL D+S G + + + WDKR K
Sbjct: 726 SYTPASNSLAEDRAYGVHSGSNTNFVEASRGATMDLAGDESAARGFGEPRSIMRWDKRQK 785
Query: 652 KYIKLNNGERVSASGK---VVKTESGAKVKAT-KTGIYKKWK--ERSHKKVYLKGASNEG 705
KY+ N E S GK +V+ ESG K+ A+ ++G + WK +R + + A N G
Sbjct: 786 KYVSRRNDEDGSKGGKGDLLVRGESGIKIAASFRSGRFDAWKKGKRIGRMPRVGEAENPG 845
Query: 706 NAEETTSVPGGRHLGGNNRKFRGGKNQQRSVPN 738
A + +PGG +K+R K Q P+
Sbjct: 846 LA---SGMPGG-------KKYRHRKEQAPKNPD 868
>gi|358384615|gb|EHK22212.1| hypothetical protein TRIVIDRAFT_209061 [Trichoderma virens Gv29-8]
Length = 897
Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust.
Identities = 306/744 (41%), Positives = 429/744 (57%), Gaps = 101/744 (13%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+++ ++ N+ +AI RKG+ VPTPIQRKT+PL+L DVV MARTGSGKTAAF++P
Sbjct: 85 KGGGFQAMGINANLLKAIARKGFSVPTPIQRKTIPLVLERKDVVGMARTGSGKTAAFVIP 144
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M+++L H + G RALILSP+R+LA+QTLK KELGR TDL+ LLVGGDS+E QF +
Sbjct: 145 MIEKLRAHSSKFGSRALILSPSRELAIQTLKVVKELGRGTDLKSVLLVGGDSLEEQFGFM 204
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
+ NPDI+IATPGR +H E+ + L S++YVVFDEAD LF MGFA QL +IL L +R
Sbjct: 205 SANPDIVIATPGRFLHLKVEM-GLDLSSIKYVVFDEADRLFEMGFATQLTEILHALPPSR 263
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSATLP++L EFA+AGL+DP LVRLD DTK+SPDL+ AFF+++ EK +LL+++
Sbjct: 264 QTLLFSATLPASLVEFARAGLQDPSLVRLDADTKVSPDLETAFFSVKGAEKEGSLLHILH 323
Query: 261 EHIS-------------------------------SDQQTLIFVSTKHHVEFLNVLFREE 289
+ I + T+IF +TKHHVE+L L ++
Sbjct: 324 DVIKVPLGPPAGAEDETEKNSRKRKRQPDNGAGKPTQHSTIIFTATKHHVEYLYNLLKQA 383
Query: 290 GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKI 349
G S YG +DQ AR+I V FR KT L+VTDVAARGIDIP+L NVIN+DFPP+PK+
Sbjct: 384 GFATSHVYGSLDQTARRIQVEDFRMGKTNLLVVTDVAARGIDIPVLANVINYDFPPQPKV 443
Query: 350 FVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKI 409
F+HRVGR ARAG+ G A+S V D YLLDL LFL K + E+E D
Sbjct: 444 FIHRVGRTARAGQRGWAYSLVRDVDAPYLLDLQLFLGKKLVVGQVEKEPSYTDD------ 497
Query: 410 DQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKE 469
+ G P+ + + + + +D + D+ +L+ A +LY KT+ S +
Sbjct: 498 --------VVVGALPRDAVGTHVEWLNKFLDENEDVEALRGVAIKAEKLYMKTRNSASSQ 549
Query: 470 SIRRGK-DLPREG---LHPMFKNVLEGGELMALAFSERLKAFRPKQTILE-AEGEAARSK 524
S +R + ++ G LHP+F ++G E A ++ FRP++TI E +G+ A
Sbjct: 550 SAKRSREEVASRGWSQLHPLFGKDVDGAEEARAAMLAKISNFRPQETIFEVGQGDKA--- 606
Query: 525 HLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKSMEKEVEPEAD--------------- 569
+S+ +VMK+ R V ++ ++ ++E+E + D
Sbjct: 607 -----TSEAAEVMKQLR-------KRVRPRKKEETNDEEMEVDDDYGGVQAPDSDEDANM 654
Query: 570 -------SLMAKEIKETHGSKR-KAKT-FKDEEYFISSVP--TNHHMEAGLSVRS-DQGF 617
+ I T +K+ K +T ++D E F+S P N E G V S QG
Sbjct: 655 DDDDEYGDDLEVTITNTGKTKKEKGRTDWRDNEVFMSYTPRTINAAEERGYGVHSGGQGS 714
Query: 618 GLNRL-EAAVLDLVADDSG---GLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTES 673
L A +DL DD+ G + ++ WD + KKY+ N E S K++ ES
Sbjct: 715 SFVELARDATMDLTNDDTAKAFGAPTRPRM-RWDAKSKKYVNSANDEDGSRGAKMIVGES 773
Query: 674 GAKVKAT-KTGIYKKWKE--RSHK 694
G K+ A+ +G + KWK+ R HK
Sbjct: 774 GVKIAASFSSGRFDKWKKAHRVHK 797
>gi|402593242|gb|EJW87169.1| DEAD/DEAH box helicase, partial [Wuchereria bancrofti]
Length = 746
Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust.
Identities = 311/784 (39%), Positives = 454/784 (57%), Gaps = 84/784 (10%)
Query: 36 RAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVR 95
+ ++KG++ PTPIQRK +P+I+ G D+VAM+RTGSGKTAAF++P+LQ+L G+R
Sbjct: 8 KEFRKKGFRQPTPIQRKAIPIIIDGKDIVAMSRTGSGKTAAFVIPILQKLKVR-DMKGIR 66
Query: 96 ALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLM 155
ALI+ PTR+LA+QT KELGR+T LR ++LVGGD +E QF+ + + PDI+IATPGRL+
Sbjct: 67 ALIIEPTRELAMQTFTVVKELGRFTGLRCAVLVGGDRIEEQFQAVHEKPDIVIATPGRLL 126
Query: 156 HHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAE 215
H + E+ D L +V+ +VFDEAD LF MGFAEQLH++L +L ENRQTLLFSATLP ++
Sbjct: 127 HVIVEM-DFRLSAVQVIVFDEADRLFEMGFAEQLHEVLKRLPENRQTLLFSATLPKSIIA 185
Query: 216 FAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVST 275
F+KAGL DP LVRLD+ KIS L + F R ++K AA L++ RE I++++QT++F +T
Sbjct: 186 FSKAGLSDPVLVRLDLAEKISDKLSMVFLYCRTDDKLAAFLHLAREVIAANEQTVVFCAT 245
Query: 276 KHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL 335
HVE+L + + G++ V Y +D AR I++ +FR ++ LIVTD+AARG+DIPLL
Sbjct: 246 MKHVEYLAAVTGKAGIDCVVLYSQLDSVARNINIQKFRKKECSLLIVTDIAARGVDIPLL 305
Query: 336 DNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSE 395
D IN+ FP KPK+FVHRVGR ARAGR+G A S ++++ Y++DL LFL++P++ + +
Sbjct: 306 DVAINYHFPSKPKLFVHRVGRVARAGRSGKAISLFGADEVPYVIDLFLFLNRPLKFSTT- 364
Query: 396 EEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNA 455
++ + E G FP +ID D ++ + D+S +L+ L + NA
Sbjct: 365 ---------------SSVNSDEASIGIFPDGIIDREIDFLKNVHDNSDELDDLLKKSENA 409
Query: 456 FRLYSKTKPLPSKESIRRGKDLPREGL-----HPMFKNVLEGGELMALAFSERLKAFRPK 510
+ Y KT+P PS ES+RR KD +E L HP + E + +F L F+
Sbjct: 410 MQKYKKTRPQPSAESVRRAKDEVKEALFKASVHPFLQQE-SPEEAVRQSFLRDLHNFKST 468
Query: 511 QTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKII------NLVHQQRSSKSMEKEV 564
TI E + G + VMK+KR H+ I N S+ +
Sbjct: 469 ATIFEIQN---------GSKALSAAVMKEKRKAHQSYIHSKTNSNKCTDLDQSEITDSTF 519
Query: 565 EPEADSL---MAKEIKETHGSKRKA---------KTFKDE------EYFISSVPTNHHME 606
EP D L I+ T S A K DE ++FI+ P + E
Sbjct: 520 EPSEDVLKDTFQAVIRNTKFSAVNALMQKKYKRRKRKADELLEEKKKHFIAYAPAEANAE 579
Query: 607 AGLSVRSDQGFGLNRL-EAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSAS 665
GL+V D N L +A+ ++++ADD GL KQ + WD++ KK++ N + S
Sbjct: 580 RGLAVDHD----FNALAKASAIEILADDEVGLYKQDRRKKWDRKLKKFVGSNGDD----S 631
Query: 666 GKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNAEETTSVPGGRHLGGNNR 724
K ++TE G + AT K+G Y+KW+ KK L+ +N+ + +ET +H
Sbjct: 632 KKKIRTEDGTYLPATYKSGRYEKWQ----KKQKLEYQNNDDDNDETVDQRIRQH------ 681
Query: 725 KFR----GGKNQQRSVPNAHVC-SEIKDLDQVRKERQKKADRIAFMKGKTQKGKKFSKNG 779
FR GK +Q V N SE+K +Q+ K+R KKA ++ + Q+ K K G
Sbjct: 682 DFRVRSGNGKRRQNKVGNEKAPRSELKTSEQILKQRNKKARIQSYQSYRRQQNLK--KKG 739
Query: 780 KRGK 783
GK
Sbjct: 740 VIGK 743
>gi|358366421|dbj|GAA83042.1| dead box ATP-dependent rna helicase [Aspergillus kawachii IFO 4308]
Length = 934
Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust.
Identities = 323/827 (39%), Positives = 443/827 (53%), Gaps = 116/827 (14%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+++ L+ N+ +AI RKG+ VPTPIQRKT+P+I+ DVV MARTGSGKTAAF++P
Sbjct: 91 KGGGFQAMGLNANLLKAITRKGFSVPTPIQRKTIPVIMEDQDVVGMARTGSGKTAAFVIP 150
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M+Q+L H Q G R LILSP+R+LALQTLK KELG+ TDL+ LLVGGDS+E QF +
Sbjct: 151 MIQKLKSHSTQVGARGLILSPSRELALQTLKVVKELGKGTDLKSVLLVGGDSLEEQFSMM 210
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
A NPDI+IATPGR +H E+ + L S+ YVVFDEAD LF MGFA QL +IL L R
Sbjct: 211 AGNPDIVIATPGRFLHLKVEMH-LDLSSIRYVVFDEADRLFEMGFAAQLTEILHGLPSTR 269
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSATLP +L EFA+AGL++P LVRLD ++KISPDL+ AFF+++ +K AL+Y++
Sbjct: 270 QTLLFSATLPKSLVEFARAGLQEPTLVRLDTESKISPDLQNAFFSVKSSDKEGALMYILH 329
Query: 261 EHI-------------------------------SSDQ-----------QTLIFVSTKHH 278
I S D+ T+IF +TKHH
Sbjct: 330 NVIKMPTGPTEAAQRMKEENASGKGGRFSKKRKRSDDKGINFKESPTKHSTIIFAATKHH 389
Query: 279 VEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNV 338
V++L L +E G S YG +DQ ARKI V FR T L+VTDVAARGIDIP+L NV
Sbjct: 390 VDYLYSLLKEAGFATSYAYGSLDQTARKIQVHNFRTGITNILVVTDVAARGIDIPILANV 449
Query: 339 INWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEV 398
IN+DFP + KIFVHRVGR ARAGRTG ++S V D YLLDL LFL + + E
Sbjct: 450 INYDFPSQAKIFVHRVGRTARAGRTGWSYSLVRDSDAPYLLDLQLFLGRRLVLGREHGES 509
Query: 399 LLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRL 458
+ + V + G FP+ + + V +++D + D+ + + + +L
Sbjct: 510 VNFAEDV-------------VVGGFPRDGLSQSCEWVTKVLDDTVDIAAQRSVASKGEKL 556
Query: 459 YSKTKPLPSKESIRRGKDLPRE----GLHPMFKNVLEGGELMALAFSERLKAFRPKQTIL 514
Y +T+ S ES +R K++ LHP+F + E R+ +RP +TI
Sbjct: 557 YLRTRNAASLESAKRSKEVVSSDNWTALHPLFNDETSQLEAEREKMLARIGGYRPNETIF 616
Query: 515 EAE----GEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKSM---------- 560
E G+ + L + KK+ E +KS
Sbjct: 617 EVNNRRSGKPENEEALHTIKRVRTTLDSKKKRAQEAKSEFDDDDVPTKSGDADAEDADGA 676
Query: 561 ---EKEV-EPEADSL-MAKEI-------KETHGSKRKAK------TFKDEEYFISSVPTN 602
E E E AD++ +A E S +KAK +F++ EYF+S P N
Sbjct: 677 FSDEDEAGEGAADNMSLASETDLEVTFSSYNQSSNKKAKKDASATSFQNPEYFMSYTPNN 736
Query: 603 HHMEAGLSVRSDQGFGLNRLEA---AVLDLVADD-SGGLQKQKQVYHWDKRGKKYIKLNN 658
+M + G N +A A +DL+ D+ S G + + + WDKR KKY+ N
Sbjct: 737 TNMAEDRAYGVHSGTNANFAQASRDAAMDLLGDEGSRGFGEPRTMMRWDKRHKKYVSRQN 796
Query: 659 GERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNAEETTSVPGGR 717
E S ++V+ ESGAK+ A+ ++G + WK K L G AE PG
Sbjct: 797 DEDGSKGTRLVRGESGAKIAASFRSGRFDAWK----KGKRLTRLPRVGEAE----TPG-- 846
Query: 718 HLGGNNRKFRGGKN--------QQRSVPNAHVCSEIKDLDQVRKERQ 756
LG + +RGG+ +R+ P ++K ++ KERQ
Sbjct: 847 -LGADLNHYRGGRRFKHNKEQAPKRADPLRGDYDKMKKKNEAAKERQ 892
>gi|295667653|ref|XP_002794376.1| ATP-dependent RNA helicase DBP10 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226286482|gb|EEH42048.1| ATP-dependent RNA helicase DBP10 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 905
Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust.
Identities = 294/722 (40%), Positives = 409/722 (56%), Gaps = 67/722 (9%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+S+ L+ + +AI RKG+ VPTPIQRKT+PL+L DVV MARTGSGKTAAF++P
Sbjct: 80 KGGGFQSMGLNATLLKAIARKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVIP 139
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M+++L H + G RALI+SP+R+LALQTLK KELGR TDL+ LLVGGDS+E QFE +
Sbjct: 140 MIEKLKSHSAKFGARALIMSPSRELALQTLKVVKELGRGTDLKCVLLVGGDSLEEQFEYM 199
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
+ NPDIIIATPGR +H E+ + L S+ YVVFDEAD LF MGF+ QL +IL L +R
Sbjct: 200 SGNPDIIIATPGRFLHLKVEMS-LDLSSIRYVVFDEADRLFEMGFSAQLTEILHGLPSSR 258
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSATLP +L EFA+AGL++P L+RLD ++KISPDL+ FFT++ EK ALL+++
Sbjct: 259 QTLLFSATLPKSLVEFARAGLQEPTLIRLDAESKISPDLQNGFFTIKSSEKEGALLHLLH 318
Query: 261 EHIS------------------------------------SDQQTLIFVSTKHHVEFLNV 284
+ I ++ T+IF +TKHHV++L
Sbjct: 319 DIIKIPTGETEAGKRTKEELHNPKKRKRSDPVVKSHKESPTEHSTIIFTATKHHVDYLTS 378
Query: 285 LFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFP 344
+ R+ G S YG +DQ ARKI V FR+ T L+VTDVAARGIDIP+L NVIN+DFP
Sbjct: 379 VLRQSGFAVSYAYGSLDQTARKIEVQNFRSGITHILVVTDVAARGIDIPILSNVINYDFP 438
Query: 345 PKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDG 404
+ KIFVHRVGR ARAGRTG ++S + D YLLDL LFL +P+ +L G
Sbjct: 439 SQSKIFVHRVGRTARAGRTGWSYSLIRESDAPYLLDLQLFLGRPL--------ILGRASG 490
Query: 405 VMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKP 464
Q + + G + + + V +++D D+ + +LY +T+
Sbjct: 491 -----QQVNYAEDVVVGSLQRDQVSRYCEWVSKLLDEDVDVALQREVAMKGEKLYMRTRN 545
Query: 465 LPSKESIRRGKDLPREG----LHPMFKNVLEGGELMALAFSERLKAFRPKQTILEA---E 517
S ES +R K+L +HP+F + E RL ++P++TI E
Sbjct: 546 SASSESAKRAKELVGSDEWMMVHPLFNDESSRLEEEREKMLARLGGYKPQETIFEIGGRR 605
Query: 518 GEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKSMEKEVEPEADSLMAKEIK 577
G A S+H D + + + N +S S E EV + K
Sbjct: 606 GGVADSQHNDDNGDNEGDELADFDGDDDNVGNADDMSLASDS-ELEVTFSYPQSSISKSK 664
Query: 578 ETHGSKRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEA---AVLDLVADDS 634
+ + +F++ EYF+S P ++ + + G N +EA A +DL D+S
Sbjct: 665 KAANNPTLGDSFQNPEYFMSYTPASNSLVEDRAYGVHSGSNTNFVEASRGATMDLAGDES 724
Query: 635 G--GLQKQKQVYHWDKRGKKYIKLNNGERVSASGK---VVKTESGAKVKAT-KTGIYKKW 688
G + + + WDKR KKY+ N E S GK +V+ ESG K+ A+ ++G + W
Sbjct: 725 ASRGFGEPRSIMRWDKRQKKYVCRRNDEDGSKRGKGDLLVRGESGTKIAASFRSGRFDAW 784
Query: 689 KE 690
K+
Sbjct: 785 KK 786
>gi|261193383|ref|XP_002623097.1| ATP-dependent RNA helicase DBP10 [Ajellomyces dermatitidis
SLH14081]
gi|239588702|gb|EEQ71345.1| ATP-dependent RNA helicase DBP10 [Ajellomyces dermatitidis
SLH14081]
Length = 945
Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust.
Identities = 312/813 (38%), Positives = 435/813 (53%), Gaps = 123/813 (15%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+S+ L+ + +AI RKG+ VPTPIQRKT+PL+L DVV MARTGSGKTAAF++P
Sbjct: 84 KGGGFQSMGLNATLLKAITRKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVIP 143
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M+++L H + G RALIL P+R+LALQTLK KELGR TDL+ LLVGGDS+E QFE +
Sbjct: 144 MIEKLKNHSAKFGSRALILLPSRELALQTLKVVKELGRGTDLKSVLLVGGDSLEEQFEYM 203
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
A NPDIIIATPGR +H E+ + L S+ YVVFDEAD LF MGFA QL +IL L +R
Sbjct: 204 AGNPDIIIATPGRFLHLKVEMS-LDLSSIRYVVFDEADRLFEMGFAAQLTEILHGLPSSR 262
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSATLP +L EFA+AGL++P L+RLD ++KISPDL+ AFFT++ EK ALL+++
Sbjct: 263 QTLLFSATLPKSLVEFARAGLQEPTLIRLDAESKISPDLQNAFFTVKSSEKEGALLHLLH 322
Query: 261 EHIS------------------------------------SDQQTLIFVSTKHHVEFLNV 284
E I ++ T+IF +TKHHV++L
Sbjct: 323 EVIKIPTGETEAHKRAKEEAKNPRKRKRSEFASNSHKESPTEHSTIIFTATKHHVDYLVS 382
Query: 285 LFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFP 344
+ R G S YG +DQ ARKI V FR+ T L+VTDVAARGIDIP+L NVIN+DFP
Sbjct: 383 ILRISGFAVSYAYGSLDQTARKIEVQNFRSGITHILVVTDVAARGIDIPILSNVINYDFP 442
Query: 345 PKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDG 404
+ KIFVHRVGR ARAG+TG ++S + D YLLDL LFL +P+ +L G
Sbjct: 443 SQAKIFVHRVGRTARAGKTGWSYSLIRESDAPYLLDLQLFLGRPL--------ILGRGSG 494
Query: 405 VMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKP 464
Q + + G P+ + ++ V +++D D+ + +LY +T+
Sbjct: 495 -----QQLNYTEDVVVGSLPRDKVSRYTEWVSKLLDEDVDVELQREVAMKGEKLYMRTRN 549
Query: 465 LPSKESIRRGKDLPREG----LHPMFKNVLEGGELMALAFSERLKAFRPKQTILEAEGEA 520
S ES +R KD+ +HP+F + E R+ ++P++TI E G
Sbjct: 550 SASSESAKRAKDVVESDEWLMVHPIFSDESSRLEEEREKMLARVGGYKPQETIFEIGGRR 609
Query: 521 ARSKHLQGPSSQWVDVMKK-------KRAVHEKIINLVHQQRSSKSMEKEVEPEADSLMA 573
+ + +D+M+K KRA E I H S + + + DS
Sbjct: 610 GGKNG----NDEAIDMMRKMRSTFASKRARKESAIKSAHLGNSGGAANDNLPNDNDSDDD 665
Query: 574 -------------------------------------KEIKETHGSKRKAKTFKDEEYFI 596
++K + ++F + EYF+
Sbjct: 666 GLADLGDENDNAITADNMSLASDSELEVTFSYPQSGKSKLKTDANDSKPGESFHNPEYFM 725
Query: 597 SSVPTNHHMEAGLSVRSDQGFGLNRLEA---AVLDLVADDSG--GLQKQKQVYHWDKRGK 651
S P ++ + + G N +EA A +DL D+S G + + + WDKR K
Sbjct: 726 SYTPASNSLAEDRAYGVHSGSNTNFVEASRGATMDLAGDESAARGFGEPRSIMRWDKRQK 785
Query: 652 KYIKLNNGERVSASGK---VVKTESGAKVKAT-KTGIYKKWK--ERSHKKVYLKGASNEG 705
KY+ N E S GK +V+ ESG K+ A+ ++G + WK +R + + A N G
Sbjct: 786 KYVSRRNDEDGSKGGKGDLLVRGESGIKIAASFRSGRFDAWKKGKRIGRMPRVGEAENPG 845
Query: 706 NAEETTSVPGGRHLGGNNRKFRGGKNQQRSVPN 738
A + +PGG +K+R K Q P+
Sbjct: 846 LA---SGMPGG-------KKYRHRKEQAPKNPD 868
>gi|115397285|ref|XP_001214234.1| hypothetical protein ATEG_05056 [Aspergillus terreus NIH2624]
gi|121738336|sp|Q0CMM8.1|DBP10_ASPTN RecName: Full=ATP-dependent RNA helicase dbp10
gi|114192425|gb|EAU34125.1| hypothetical protein ATEG_05056 [Aspergillus terreus NIH2624]
Length = 928
Score = 507 bits (1305), Expect = e-140, Method: Compositional matrix adjust.
Identities = 314/794 (39%), Positives = 438/794 (55%), Gaps = 102/794 (12%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+++ L+ N+ +AI RKG+ VPTPIQRKT+P+I+ DVV MARTGSGKTAAF++P
Sbjct: 87 KGGGFQAMGLNANLLKAITRKGFSVPTPIQRKTIPVIMDDRDVVGMARTGSGKTAAFVIP 146
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M+++L H + G R LILSP+R+LALQTLK KELG+ TDL+ LLVGGDS+E QF +
Sbjct: 147 MIEKLKSHSSKFGARGLILSPSRELALQTLKVVKELGKGTDLKSVLLVGGDSLEEQFGMM 206
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
A NPDI+IATPGR +H E+ ++ L S+ YVVFDEAD LF MGFA QL +IL L R
Sbjct: 207 AGNPDIVIATPGRFLHLKVEM-NLDLSSIRYVVFDEADRLFEMGFAAQLTEILHGLPTTR 265
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSATLP +L EFA+AGL++P L+RLD ++KISPDL+ AFF+++ +K ALLY++
Sbjct: 266 QTLLFSATLPKSLVEFARAGLQEPTLIRLDTESKISPDLQNAFFSVKSADKEGALLYILH 325
Query: 261 EHIS-------------------------------------------SDQQTLIFVSTKH 277
E I + T++F +TKH
Sbjct: 326 EVIKMPTGPTEVAQRLQEEKANSKDSKNSKKRKRSEMDKAVNMKESPTKHSTIVFAATKH 385
Query: 278 HVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDN 337
HV++L L RE G S YG +DQ ARKI V+ FR + L+VTDVAARGIDIP+L N
Sbjct: 386 HVDYLYSLLREAGFAVSYAYGSLDQTARKIQVNNFRTGLSNILVVTDVAARGIDIPILAN 445
Query: 338 VINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEE 397
VIN+DFP +PKIFVHRVGR ARAGR G ++S V D YLLDL LFL + +
Sbjct: 446 VINYDFPSQPKIFVHRVGRTARAGRKGWSYSLVRDADAPYLLDLQLFLGRRL-------- 497
Query: 398 VLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFR 457
VL G DQ + + G FP+ + + V ++D + D+ S + T +
Sbjct: 498 VLGREHG-----DQVDYAEDVVVGGFPRDSLAQNCEWVTRVLDDNRDIFSQRTVATKGEK 552
Query: 458 LYSKTKPLPSKESIRRGKDLPREG----LHPMFKNVLEGGELMALAFSERLKAFRPKQTI 513
LY +T+ S ES +R K + +HP+F + E+ R+ +RP++TI
Sbjct: 553 LYMRTRNAASLESAKRSKSVVGSDHWTTIHPLFSDAETEMEIQREKMLARIGGYRPQETI 612
Query: 514 LEAEG------EAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKSMEKEVEPE 567
E E + H +D KKKRA E+ L+ E P+
Sbjct: 613 FEVNNRRSGKPENEEALHTIKRVRSTLD-SKKKRAQAEEQSELLEDASGGNEGEANGNPD 671
Query: 568 A-----------DSL-MAKE--IKETHGSKRKAKT----------FKDEEYFISSVPTNH 603
A D++ MA E ++ T S ++K+ F++ EYF+S P++
Sbjct: 672 AMSDDDIPDGVPDNMSMASESDLEVTFSSYSQSKSDKAKKDSTAAFQNPEYFMSYTPSST 731
Query: 604 HMEAGLSVRSDQGFGLNRLEAA---VLDLVADDSG-GLQKQKQVYHWDKRGKKYIKLNNG 659
++ + G N +A+ +DL D+ G + + + WDKR KKY+ N
Sbjct: 732 NLAEDRAYGVHTGTNANFTQASRSVTMDLQLDEGARGFAEPRTMKRWDKRHKKYVSRQND 791
Query: 660 ERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNAEETTSVPGGRH 718
E S +V+ ESGAK+ A+ ++G + WK K L G AE+ TS+ G +
Sbjct: 792 EDGSKGEHLVRGESGAKIAASFRSGKFDAWK----KSKRLGRLPRVGEAED-TSLSAGLN 846
Query: 719 LGGNNRKFRGGKNQ 732
++FR K+Q
Sbjct: 847 SAMGGKRFRHHKDQ 860
>gi|225558604|gb|EEH06888.1| ATP-dependent RNA helicase DBP10 [Ajellomyces capsulatus G186AR]
Length = 940
Score = 507 bits (1305), Expect = e-140, Method: Compositional matrix adjust.
Identities = 300/761 (39%), Positives = 422/761 (55%), Gaps = 111/761 (14%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+SL L+ + +AI RKG+ VPTPIQRKT+PL+L DVV MARTGSGKTAAF++P
Sbjct: 86 KGGGFQSLGLNAALLKAITRKGFSVPTPIQRKTIPLVLDDQDVVGMARTGSGKTAAFVIP 145
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M+++L H + G RALILSP+R+LALQTLK KELGR TDL+ LLVGGDS+E QFE +
Sbjct: 146 MIEKLKSHSAKFGSRALILSPSRELALQTLKVVKELGRGTDLKSVLLVGGDSLEEQFEYM 205
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
A NPDIIIATPGR +H E+ + L S+ YVVFDEAD LF MGFA QL +IL L +R
Sbjct: 206 ASNPDIIIATPGRFLHLKVEMS-LDLSSIRYVVFDEADRLFEMGFATQLTEILHGLPSSR 264
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSATLP +L EFA+AGL++P L+RLD ++KISPDL+ AFFT++ EK ALL+++
Sbjct: 265 QTLLFSATLPKSLVEFARAGLQEPILIRLDAESKISPDLQNAFFTVKSSEKEGALLHVLH 324
Query: 261 EHIS------------------------------------SDQQTLIFVSTKHHVEFLNV 284
E I ++ T+IF +TKHHV++L
Sbjct: 325 EVIKIPTGETEAHKRAKEEVKHSKKRKRSEVTSNSHKESPTEYSTIIFTATKHHVDYLTS 384
Query: 285 LFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFP 344
+ R G S YG +DQ ARKI V FRA T L+VTDVAARGIDIP+L NVIN+DFP
Sbjct: 385 ILRTSGFAVSYAYGSLDQTARKIEVQNFRAGITHILVVTDVAARGIDIPILSNVINYDFP 444
Query: 345 PKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDG 404
+PKIFVHRVGR ARAG+TG ++S + D YLLDL LFL +P L+ G
Sbjct: 445 SQPKIFVHRVGRTARAGKTGWSYSLIRESDTPYLLDLQLFLGRP----------LILGRG 494
Query: 405 VMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKP 464
+++ A + G P+ + ++ + +++D D+ + +LY +T+
Sbjct: 495 SGHQLNYA---ENVVVGSLPRDKVARYTEWMTKLLDEDVDVELQREVAMKGEKLYMRTRN 551
Query: 465 LPSKESIRRGKDLPREG----LHPMFKNVLEGGELMALAFSERLKAFRPKQTILEAEGEA 520
S ES +R K + +HP+F + E R+ ++P++TI E G
Sbjct: 552 SASGESAKRAKAVVESAEWMMVHPLFNDESSRLEEQREKMLARVGGYKPQETIFEISGR- 610
Query: 521 ARSKHLQGPSSQWVDVMKKKRAVHEK-------IINLVHQQRSSKSMEKEVEPEADSLMA 573
+ + + + +D+M+K R+ E N H R + + +AD L
Sbjct: 611 ---RGGKNGNDEAIDMMRKMRSTLESKKKRKECAQNNTHDLRIANHHPPDDNDDADEL-- 665
Query: 574 KEIKETHGSKRKA-----------------------------------KTFKDEEYFISS 598
++ + +G+ A ++F + EYF+S
Sbjct: 666 RDFDDENGNAIAADNMSLASDSELEVTFSYPQSGKSNSKKDTNNPNLRESFHNPEYFMSY 725
Query: 599 VPTNHHMEAGLSVRSDQGFGLNRLEA---AVLDLVADDSG--GLQKQKQVYHWDKRGKKY 653
P ++ + + G N +E+ A +DL D+S G + + + WDKR KKY
Sbjct: 726 TPASNSLAEDRAYGVHSGSNTNFVESSRIATMDLAGDESTSRGFGEPRSIMRWDKRQKKY 785
Query: 654 IKLNNGERVSASGK---VVKTESGAKVKAT-KTGIYKKWKE 690
+ N E S GK +V+ ESG K+ A+ ++G + WK+
Sbjct: 786 VSRRNDEDGSKGGKSDLLVRGESGVKIAASFRSGRFDAWKK 826
>gi|378726362|gb|EHY52821.1| ATP-dependent RNA helicase dbp10 [Exophiala dermatitidis
NIH/UT8656]
Length = 931
Score = 507 bits (1305), Expect = e-140, Method: Compositional matrix adjust.
Identities = 303/762 (39%), Positives = 429/762 (56%), Gaps = 118/762 (15%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+++ L+ N+ +AI RKG+ VPTPIQRKT+PL+L+ DVV MARTGSGKTAAF++P
Sbjct: 84 KGGGFQAMGLNANLLKAITRKGFSVPTPIQRKTIPLLLNDKDVVGMARTGSGKTAAFVIP 143
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M+++L H + G RALI+SP+R+LALQTL+ KELG+ TDLR LLVGGDS+E QF +
Sbjct: 144 MIEKLKAHSSKVGARALIMSPSRELALQTLQVVKELGKGTDLRSILLVGGDSLEQQFSAM 203
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
A NPDIIIATPGR +H E+ + L S++YVVFDEAD LF MGFA QL +IL L +R
Sbjct: 204 ANNPDIIIATPGRFLHLKVEMS-LDLSSMKYVVFDEADRLFEMGFAAQLTEILHALPASR 262
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSATLP +L EFA+AGL++P LVRLD D+KISPDL+ AFFTL+ EK ALL++++
Sbjct: 263 QTLLFSATLPKSLVEFARAGLQEPVLVRLDADSKISPDLQSAFFTLKSSEKEGALLHLLQ 322
Query: 261 EHI-------------------------------------SSDQQTLIFVSTKHHVEFLN 283
+ I S T++F +TKHHVE+L
Sbjct: 323 DIIKVPTRSQLISSATRTDDAKPGKKRKRPDAEEKKGAAGSDPYSTIVFAATKHHVEYLA 382
Query: 284 VLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDF 343
L R G S YG +DQ ARK V FR +T L+VTDVAARGIDIP+L NVIN+DF
Sbjct: 383 QLLRLAGYAVSYVYGSLDQTARKTQVHAFRTGQTNILVVTDVAARGIDIPVLANVINYDF 442
Query: 344 PPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMD 403
P +PKI+VHRVGR ARAG+ G ++S V D YLLDL LFL + +
Sbjct: 443 PSQPKIYVHRVGRTARAGQKGWSYSLVRDVDAPYLLDLQLFLGRKL-------------- 488
Query: 404 GVMSKIDQAIAN--GETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSK 461
++ + + A N + + G F + + + V + ++S ADL++L+ +LY +
Sbjct: 489 -IVGRANTADVNFAQDVVVGTFRRDELQTNCEWVTKSLESDADLSALRSVAAKGEKLYQR 547
Query: 462 TKPLPSKESIRRGKDL----PREGLHPMFKNVLEGGELMALAFSERLKAFRPKQTILEAE 517
T+ S ES +R K L LH +F + + E R+ FRP+++I E
Sbjct: 548 TRNSASSESAKRSKQLVTAQSWSELHALFNDQADDLEAEREKMLARVGGFRPQESIFEIG 607
Query: 518 GEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKS---MEKEVEPEADSLM-- 572
K+ + VD ++K R L H+++ S+ +KE E D+ +
Sbjct: 608 ARRGGRKN----NEDAVDAIRKIR------TGLEHRKQKSQDAAQAQKEAFDEGDAYVES 657
Query: 573 -----------AKEI------------------KETHGSKRKAKT----------FKDEE 593
++E+ E H K+K+ F+D E
Sbjct: 658 AGRQGVGHEAESEEVDFNDAMSTASSSELEVTFSEPHSKKQKSNNNHLESNDFSAFRDPE 717
Query: 594 YFISSVPTNHHMEAGLSVRSDQGFGLNRLEA---AVLDLVADDSG-GLQKQKQVYHWDKR 649
F+S P++ ++ + G N EA A +DL D+SG + + + WDKR
Sbjct: 718 NFMSYHPSSTNLSDDRAYGVHSGSNTNFAEAARSATMDLAMDESGKNFGEARSIMRWDKR 777
Query: 650 GKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKE 690
KKY++ +N E S ++V+ ESG K+ A+ ++G +++WK+
Sbjct: 778 HKKYVRRDNDEDGSKGKRLVRGESGVKIAASFRSGRFERWKK 819
>gi|341892664|gb|EGT48599.1| hypothetical protein CAEBREN_09605 [Caenorhabditis brenneri]
Length = 813
Score = 506 bits (1304), Expect = e-140, Method: Compositional matrix adjust.
Identities = 314/812 (38%), Positives = 462/812 (56%), Gaps = 104/812 (12%)
Query: 15 KQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKT 74
+ +K K+GG++ L L +F+AI++KG+ PTPIQRKT+P I+ G DVVAM+RTGSGKT
Sbjct: 16 QNRKHKKAGGWQQLGLDHTIFKAIEKKGFSQPTPIQRKTIPCIMDGKDVVAMSRTGSGKT 75
Query: 75 AAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSME 134
AAF++PMLQ+L +G +RAL++SPTR+LALQT K KELGR+T LR + LVGGD +E
Sbjct: 76 AAFVIPMLQKLKGRDTKG-IRALMVSPTRELALQTFKVVKELGRFTGLRCACLVGGDVLE 134
Query: 135 SQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILG 194
QF + +NPDI++ATPGRL+H + E+ D+ L V+YVVFDEAD LF MGF +QL + L
Sbjct: 135 EQFSTIHENPDILLATPGRLLHVIVEM-DLRLSFVQYVVFDEADRLFEMGFQDQLTETLK 193
Query: 195 QLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAA 254
++ E+RQTLLFSATLP L +FAKAGL DP LVRLDVD K+S L + F R +EK A
Sbjct: 194 RIPESRQTLLFSATLPKMLVDFAKAGLTDPMLVRLDVDEKVSDKLSMVFCMCRPDEKLFA 253
Query: 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRA 314
LL++ R ++QT+IF +T HVE++ + G++ S Y +D ARK ++ +F
Sbjct: 254 LLHLCRRMDRENKQTVIFCATMKHVEYVVGILHRAGIDCSFVYSQLDATARKQNIQKFHE 313
Query: 315 RKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
++ L+VTDVAARG+DIPLLD VIN FP K K+FVHRVGR ARAGR+GTA S + +++
Sbjct: 314 KQNNILVVTDVAARGVDIPLLDTVINLHFPSKAKLFVHRVGRVARAGRSGTAISLIANDE 373
Query: 375 MAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDR 434
+ YL DL +FL KPI+ A DG K D ET+ GR P +++ L ++
Sbjct: 374 LPYLTDLFMFLGKPIKFA---------QDGSEYKED------ETLIGRVPDSIVSLETEF 418
Query: 435 VREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK-DLPREGL----HPMFKNV 489
I D++ ++ L++ TNA Y++T+ PS ES RR K D+ + + HP K
Sbjct: 419 FNSIHDNNEEMIDLRQKATNAMMKYTRTRQPPSAESARRVKQDIRTDSVECAPHPFLK-- 476
Query: 490 LEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIIN 549
G+ + R+ ++ + TI E + SQ + VM+ KR HE I
Sbjct: 477 -AEGDKQSNDILNRISQYKSRNTIFEMN---------KSTKSQALAVMQAKRKAHEPRIF 526
Query: 550 LVHQQRSSKSMEKEVEPEADSLMAKEIKETH-------------------GSKRKAKTFK 590
V +++ + E+ + E D AKE+K T GS + +T +
Sbjct: 527 TVTEEKRKQKEERVQKEEKD---AKEVKITLEDPIGVDEGELAEVFGTVIGSTKHKETSE 583
Query: 591 D---------------------------EEYFISSVPTNHHMEAGLSVRSDQGFGLNRLE 623
+ E++++ ++H E L++ D+ + E
Sbjct: 584 ENPGNKKKKKNGGAGKKIDRAEQMKMEREKHYVPYTSSDHVAERQLAL--DKVDFARQAE 641
Query: 624 AAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KT 682
A +D++ DD G+ QK WD+R KKY+ L+ E + K ++TE G + A+ KT
Sbjct: 642 GASVDIIMDDDRGMYNQKHGQRWDRRLKKYVGLSGNE---PANKKIRTEDGTWLPASYKT 698
Query: 683 GIYKKWKERSHKKVYLKGASNEGNAEETTSVPGGRHLGGNNRKFRGGKNQQRSVPNAHVC 742
G Y++WK++ K + K +G+A + +NRK R K + P
Sbjct: 699 GKYEEWKQK-QKIGFKKDDGEDGDAMDQ----------DHNRK-RKWKADPKKGPKH--- 743
Query: 743 SEIKDLDQVRKERQKKADRIAFMKGKTQKGKK 774
SE+K+ DQ+ K R+K+ +M+ + Q K
Sbjct: 744 SELKNKDQILKGRRKQEKLENYMEHRRQSNLK 775
>gi|367045536|ref|XP_003653148.1| hypothetical protein THITE_2115255 [Thielavia terrestris NRRL 8126]
gi|347000410|gb|AEO66812.1| hypothetical protein THITE_2115255 [Thielavia terrestris NRRL 8126]
Length = 938
Score = 506 bits (1304), Expect = e-140, Method: Compositional matrix adjust.
Identities = 301/746 (40%), Positives = 435/746 (58%), Gaps = 89/746 (11%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+++ L+ N+ RAI RKG+ VPTPIQRKT+PLIL DVV MARTGSGKTAAF++P
Sbjct: 98 KGGGFQAMGLNANLLRAITRKGFSVPTPIQRKTIPLILERRDVVGMARTGSGKTAAFVIP 157
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M++RL H + G RALILSP+R+LALQTLK KELG+ TDLR LLVGGDS+E QF +
Sbjct: 158 MIERLKAHSARVGARALILSPSRELALQTLKVVKELGKGTDLRTVLLVGGDSLEEQFGLM 217
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
A NPDI+IATPGR +H E+ + L S++YVVFDEAD LF MGFA QL +IL L +R
Sbjct: 218 AANPDIVIATPGRFLHLKVEMS-LDLSSIKYVVFDEADRLFEMGFATQLTEILHALPPSR 276
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSATLPS+L EFA+AGL++P LVRLD +TK+SPDL+ AFF+++ EK ALL+++
Sbjct: 277 QTLLFSATLPSSLVEFARAGLQEPTLVRLDAETKVSPDLESAFFSVKGAEKEGALLHILH 336
Query: 261 EHIS---------------------------------SDQQTLIFVSTKHHVEFLNVLFR 287
+ I ++ T+IF +TKHHVE+L+ L R
Sbjct: 337 DVIKMPLGPPAGAQQDEEQQPRKRKRGSDKPSHTEKPTEHSTIIFTATKHHVEYLSNLLR 396
Query: 288 EEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKP 347
G S YG +DQ ARKI V FR ++ L+VTDVAARGIDIP+L NVIN+DFPP+P
Sbjct: 397 HAGFSVSYVYGSLDQTARKIQVDNFRRGRSNILVVTDVAARGIDIPVLANVINYDFPPQP 456
Query: 348 KIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMS 407
K+FVHRVGR ARAG+ G A++ V D+ YLLDL LFL + + +E D V+
Sbjct: 457 KVFVHRVGRTARAGQRGWAYALVRESDLPYLLDLQLFLGRKLVLGQETKEPSFARDVVVG 516
Query: 408 KIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPS 467
+ +A T + V +++ + D+++++R A +LY KT+ S
Sbjct: 517 SLMRAELENNTEW--------------VNKLLGENEDMSAMKRVTVKAEKLYMKTRNSAS 562
Query: 468 KESIRRGKD-LPREG---LHPMFKNVLEGGELMALAFSERLKAFRPKQTILE--AEGEAA 521
+S +R ++ + +G LH +F E + ++ +F+P++TI E G++A
Sbjct: 563 SQSAKRAREIIASKGWTQLHALFGESAANAEEARDSLLSKISSFKPQETIFEIGPRGKSA 622
Query: 522 RSKHLQGPSSQWVDVMKKKRA-----------VHEKIINLVHQQRSSKSMEKEVE----- 565
++K + S V +++ +++ + + S + E+E +
Sbjct: 623 QNKAAEVMRSFRAKVGPRRKTKQDDEDTEMADAGDELPPPANGRGSDEHGEEEEDRGDAG 682
Query: 566 --------PEADSLMAKEIKETHGSKRKAKTFKDEEYFISSVP--TNHHMEAGLSVRSDQ 615
E+DS + + + SK+ +F+D E F+S P T+ E V S
Sbjct: 683 AWEDEDDGSESDSELEVTVTSSRKSKKGQTSFEDPEVFMSYTPRTTSAAEERAYGVHSGG 742
Query: 616 GFGLNRLEA---AVLDLVADDSG---GLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVV 669
+ +EA A +DL D+ GL + ++ WDKR KY+ N + S K++
Sbjct: 743 SKTSHFVEAARDAAMDLTNDEGAKAFGLPTRPKM-RWDKRHSKYVARANDDDGSRGAKMI 801
Query: 670 KTESGAKVKAT-KTGIYKKWKERSHK 694
+ ESG K+ A+ ++G + KW+ R+H+
Sbjct: 802 RGESGVKIAASFQSGRFDKWR-RAHR 826
>gi|213402583|ref|XP_002172064.1| ATP-dependent RNA helicase dbp10 [Schizosaccharomyces japonicus
yFS275]
gi|212000111|gb|EEB05771.1| ATP-dependent RNA helicase dbp10 [Schizosaccharomyces japonicus
yFS275]
Length = 854
Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust.
Identities = 313/817 (38%), Positives = 470/817 (57%), Gaps = 87/817 (10%)
Query: 9 ELKRREKQKKKS-KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMA 67
E+ R+ K KK S K+ F+S+ LS + RAI +KG+K PTPIQRKT+P +L G DVV MA
Sbjct: 50 EVNRKTKGKKLSGKATNFQSMGLSTTMLRAITKKGFKAPTPIQRKTIPFVLDGRDVVGMA 109
Query: 68 RTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLL 127
RTGSGKTAAF++PM+++L Q G RA+ILSP+R+LALQT+K K+ + T+LR +++
Sbjct: 110 RTGSGKTAAFVIPMIEKLKASRAQSGSRAIILSPSRELALQTMKVVKDFSKDTNLRTAVI 169
Query: 128 VGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAE 187
VGG+ +E QF L PDII+ATPGR +H E++ + L S+EYVVFDEAD LF MGFA
Sbjct: 170 VGGEGLEEQFSILTNKPDIIVATPGRFLHLKVEMK-LELGSIEYVVFDEADRLFEMGFAA 228
Query: 188 QLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR 247
QL +IL L +RQTLLFSATLP L EFAKAGL++P LVRLDV++K+S DL+ AFF+++
Sbjct: 229 QLTEILHGLPSSRQTLLFSATLPKNLVEFAKAGLQEPILVRLDVESKVSSDLQSAFFSVK 288
Query: 248 QEEKHAALLYMIREHI------------------------------------SSDQQTLI 271
E+ AALLY+++E I ++ T++
Sbjct: 289 TAEREAALLYVLQEVIHLRLQEELKPAELPSQAENPKKRKRLLEHTLKKPETAASDSTIV 348
Query: 272 FVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGID 331
FV TKHHVE++ + ++ G S YG +DQ ARK ++ FR + L+VTDVAARGID
Sbjct: 349 FVPTKHHVEYITEMLKQAGYGVSRIYGSLDQTARKNEITNFRLGVSNVLVVTDVAARGID 408
Query: 332 IPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRA 391
IPLL NV+N+DFP +PKIFVHRVGR ARAGRTG A++FV +ED YLLDL LFL++ +
Sbjct: 409 IPLLSNVVNYDFPAQPKIFVHRVGRTARAGRTGWAYTFVRAEDAGYLLDLKLFLNRDLVT 468
Query: 392 APSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRT 451
A V + ++ E + G P + + + +I + +L L +
Sbjct: 469 AE-----------VAASREECDFTKELVLGSLPSEYVSNMQEWYESLISKNVELAQLCKV 517
Query: 452 CTNAFRLYSKTKPLPSKESIRRGKDLP----REGLHPMFKN-VLEGGELMALAFSERLKA 506
+LY +T+ S ES +R K+L ++P+ K+ V + E AL + ++ +
Sbjct: 518 AAKGEKLYIRTRTASSAESAKRAKELVGSSGWSSINPLLKDKVDDADEARALLLA-KVSS 576
Query: 507 FRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQ-----RSSKSME 561
FRP +T+ E + HL+ ++ ++M+K+R N + + R K +
Sbjct: 577 FRPSETVFELKQHG----HLR---TEAAEIMRKRREKFTPRANTMTSKVFATDRKLKKQQ 629
Query: 562 KEVEPEADSLM--AKEIKETHGSKRKAKTFKDEEYFISS-VPTNHHMEAGLSVR--SDQG 616
+ E E +++ +K + ++ SK K K F+D+EY++S P H E+G +V ++
Sbjct: 630 EVSESEVEAVFTDSKSLNISNSSK-KQKDFRDKEYYMSHYAPAEHVQESGYAVNPGKEEN 688
Query: 617 FGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVS-ASGKVVKTESGA 675
F +AVLDL D+ G Q ++ WD + KK++ + N E S K+++ ESG
Sbjct: 689 FAAA-ARSAVLDLTTDE-GVDQSRRGGQRWDSKKKKFVNIVNDEDGSRGVPKIIRGESGV 746
Query: 676 KVKAT-KTGIYKKWKERSH---KKVYLKGASNEG-----NAEETTSVPGGRHLGGNNRKF 726
K+ AT ++G + WK SH KG ++ G + + +P RK
Sbjct: 747 KLPATYRSGRFDAWKA-SHGDAASTETKGTNSSGKRFVHKSVKAPKMPDKYRDDYEVRKK 805
Query: 727 RGGKNQQRSVPNAHVCSEIKDLDQVRKERQKKADRIA 763
R + +++ + HV SE++ ++RK+ + + R A
Sbjct: 806 RVKEAKEKGI-GVHVKSELRTATEIRKQHELQEKRKA 841
>gi|336263707|ref|XP_003346633.1| hypothetical protein SMAC_04806 [Sordaria macrospora k-hell]
gi|380090528|emb|CCC11825.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 934
Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust.
Identities = 302/748 (40%), Positives = 423/748 (56%), Gaps = 95/748 (12%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+++ L+ ++ RAI RKG+ VPTPIQRK +PLIL DVV MARTGSGKTAAF++P
Sbjct: 98 KGGGFQAMGLNAHLLRAITRKGFSVPTPIQRKAIPLILERKDVVGMARTGSGKTAAFVIP 157
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M++RL H P+ G RALI+SP+R+LALQTLK KELGR TDL+ LLVGGDS+E QF +
Sbjct: 158 MIERLKGHSPRVGARALIMSPSRELALQTLKVVKELGRGTDLKTVLLVGGDSLEEQFGMM 217
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
A NPDIIIATPGR +H E+ +SL SV+YVVFDEAD LF MGFA +L +IL L +R
Sbjct: 218 AANPDIIIATPGRFLHLKVEMS-LSLSSVKYVVFDEADRLFEMGFATELTEILHALPPSR 276
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSATLPS+L EFA+AGL++P LVRLD +TK+SPDL+ AFF ++ EK ALL+++
Sbjct: 277 QTLLFSATLPSSLVEFARAGLQEPSLVRLDAETKVSPDLESAFFAVKGGEKEGALLHILH 336
Query: 261 EHIS---------------------------------SDQQTLIFVSTKHHVEFLNVLFR 287
+ I ++ T+IF +TKHHVE++ L +
Sbjct: 337 DVIKVPLGAPEGTREESDELQAKKRKREYRPNPKEKPTEYSTIIFTATKHHVEYIQNLLK 396
Query: 288 EEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKP 347
G S YG +DQ AR I V FR +T L+VTDVAARGID+P L NVIN+DFP +P
Sbjct: 397 LAGFAVSYVYGSLDQTARLIQVDNFRRGRTHILVVTDVAARGIDMPALANVINYDFPSQP 456
Query: 348 KIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMS 407
KIFVHRVGR ARAG+ G A+ V D+ YLLDL LFL + + ++ D
Sbjct: 457 KIFVHRVGRTARAGQRGWAYGLVRQSDLPYLLDLQLFLGRKLIIGHEQKNPSFAAD---- 512
Query: 408 KIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPS 467
+ G + +D+ + V + + SADLN+L+ A +LY KT+ S
Sbjct: 513 ----------VVVGTLKREGVDVNIEWVEKALKESADLNALKGVAAKAEKLYMKTRNSAS 562
Query: 468 KESIRRGKDLPREG----LHPMFKNVLEGGELMALAFSERLKAFRPKQTILE--AEGEAA 521
+S +R +++ + LHP+F + R+ F+P++TI E +G+++
Sbjct: 563 SQSAKRAREVAQSKGWTQLHPLFGEEAAESQAARDDLLSRINRFKPQETIFELGPKGKSS 622
Query: 522 RSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKSMEKEVEP--------------- 566
R+K + + ++K + ++ + K +E+
Sbjct: 623 RNKSAEVVRNMRARFKERKTTNEDDDEDVEMEDAEGKPDGEEINAFEDFEDEGEEEDAEE 682
Query: 567 ----------EADSLMAKEIKETHGSKRKAK----TFKDEEYFISSVPTNHHM--EAGLS 610
++DS M + + +K+K K +F+D E F+S P M E
Sbjct: 683 AEAKEDPYADDSDSEMEVTVSSSMHTKKKKKGGPDSFQDPEIFMSYTPRTTSMADEKAYG 742
Query: 611 VRSDQGFGLNRLEA---AVLDLVADDS----GGLQKQKQVYHWDKRGKKYIKLNNGERVS 663
V S G + +EA A +DL DDS G K K WDKR KY+ + N E S
Sbjct: 743 VHSGGYSGNSFVEAARDATMDLTNDDSAKNFGTAAKPKM--RWDKRHSKYVAVANDEDGS 800
Query: 664 ASGKVVKTESGAKVKAT-KTGIYKKWKE 690
K+++ ESG K+ A+ K+G + +W++
Sbjct: 801 KGAKMIRGESGVKIAASFKSGRFDRWRK 828
>gi|358393875|gb|EHK43276.1| hypothetical protein TRIATDRAFT_32758 [Trichoderma atroviride IMI
206040]
Length = 903
Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust.
Identities = 321/852 (37%), Positives = 464/852 (54%), Gaps = 122/852 (14%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+++ L+ N+ +AI RKG+ VPTPIQRKT+PL+L DVV MARTGSGKTAAF++P
Sbjct: 82 KGGGFQAMGLNANILKAIARKGFSVPTPIQRKTIPLVLERRDVVGMARTGSGKTAAFVIP 141
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M++RL H + G RALILSP+R+LA+QTLK KELGR TDL+ LLVGGDS+E QF +
Sbjct: 142 MIERLRAHSSKFGARALILSPSRELAIQTLKVVKELGRGTDLKAVLLVGGDSLEEQFGFM 201
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
+ NPDI+IATPGR +H E+ ++ L S++YVVFDEAD LF MGFA QL +IL L +R
Sbjct: 202 SANPDIVIATPGRFLHLKVEM-NLDLSSIKYVVFDEADRLFEMGFATQLTEILHALPPSR 260
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSATLP++L EFA+AGL+DP LVRLD DTK+SPDL++AFF+++ EK +LL+++
Sbjct: 261 QTLLFSATLPASLVEFARAGLQDPSLVRLDADTKMSPDLEIAFFSVKGAEKEGSLLHILH 320
Query: 261 EHI-------------------------------SSDQQTLIFVSTKHHVEFLNVLFREE 289
+ I ++ T+IF +TKHHVE+L L ++
Sbjct: 321 DVIRVPLGPPASAQESTENNSKKRKRGPDGGSGKPTEHSTIIFTATKHHVEYLYNLLQQA 380
Query: 290 GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKI 349
G S YG +DQ AR+I V FR KT L+VTDVAARGIDIP+L NVIN+DFPP+PK+
Sbjct: 381 GFATSHVYGSLDQTARRIQVEDFRNGKTNLLVVTDVAARGIDIPVLANVINFDFPPQPKV 440
Query: 350 FVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKI 409
F+HRVGR ARAG+ G A+S V D YLLDL LFL K + +E+ D
Sbjct: 441 FIHRVGRTARAGQRGWAYSLVRDIDAPYLLDLQLFLGKRLVVGQAEKSPSFTED------ 494
Query: 410 DQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKE 469
+ G + + + + +D S D+++L+ A +LY KT+ S +
Sbjct: 495 --------VVVGSLQRDSVGTHMEWFNKFMDQSEDVSALRAVAAKAEKLYMKTRNSASSQ 546
Query: 470 SIRRGK-DLPREG---LHPMFKNVLEGGELMALAFSERLKAFRPKQTILE-AEGEAARSK 524
S +R + ++ G LHP+F ++ E A ++ F+P++TI E +G+ A
Sbjct: 547 SAKRSREEVASRGWSQLHPLFGEDVDDAEEARAAMLAKISNFKPQETIFEIGQGDKA--- 603
Query: 525 HLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKSMEKEVE------PEADS-------- 570
+S +VMK+ R +++ Q++ ++ EV+ P DS
Sbjct: 604 -----TSAAAEVMKELR---KRVKPRKRQEKEDEAENMEVDDDFGGAPAQDSDDDEDTNE 655
Query: 571 ----------LMAKEIKETHGSKRKAKT-FKDEEYFISSVP--TNHHMEAGLSVRS--DQ 615
L K K +T ++D + F+S P N E G V S +
Sbjct: 656 NDEDDYGDDDLQVTVTNTGKSKKEKGRTDWRDNDVFMSYTPRTVNAAEERGYGVHSGGNN 715
Query: 616 GFGLNRLEAAVLDLVADDSG---GLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTE 672
+ A +DL D++ G + ++ WD + KKY+ N E S +++ E
Sbjct: 716 SSFVELARDAAMDLTNDETAKAFGAPTRARM-RWDAKSKKYVNSANDEDGSKGARLITGE 774
Query: 673 SGAKVKAT-KTGIYKKWKE--RSHKKVYLKGASNEGNAEETTSVPGGRHLGGN------- 722
SG K+ A+ ++G + KWK+ R HK + G +P G N
Sbjct: 775 SGVKIAASFQSGRFDKWKKANRVHKLPQVGELVKSGGGNGVGRLPSGVRYKHNKEQAPKE 834
Query: 723 ---------NRKFRGGKNQQRSV----PNAHVCSEIKDLDQVRKERQKKADRIAFMKGKT 769
RK R + +++ V E+KD++ +R+ RQ+K + + KT
Sbjct: 835 ADKYRDDFEKRKKRVNEAREKRVGRFKDGMGSKKEVKDVNDIRRARQEKERK----RAKT 890
Query: 770 QKGKKFSKNGKR 781
+ + K GKR
Sbjct: 891 GRHQVKGKGGKR 902
>gi|345570653|gb|EGX53474.1| hypothetical protein AOL_s00006g340 [Arthrobotrys oligospora ATCC
24927]
Length = 946
Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust.
Identities = 335/840 (39%), Positives = 469/840 (55%), Gaps = 101/840 (12%)
Query: 15 KQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKT 74
K K KSGGF+S+ L+ + +AI+RKG+ VPTPIQRKT+PL+L G DVV MARTGSGKT
Sbjct: 94 KSKSIKKSGGFQSMGLNLQLLKAIQRKGFSVPTPIQRKTIPLLLEGQDVVGMARTGSGKT 153
Query: 75 AAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSME 134
AAF+VPM+++L H + G RAL++SP+R+LALQTLK K++ R TDL+ LLVGGDS+E
Sbjct: 154 AAFVVPMIEKLKAHSAKVGARALVMSPSRELALQTLKVVKDISRGTDLKAILLVGGDSLE 213
Query: 135 SQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILG 194
QF + NPDIIIATPGR +H E+E + L S++YVVFDEAD LF MGFA QL +IL
Sbjct: 214 DQFSMMTTNPDIIIATPGRFLHLKVEME-LDLSSMQYVVFDEADRLFEMGFAAQLGEILH 272
Query: 195 QLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAA 254
L +RQT LFSATLP +L EFAKAGL +P LVRLD D+KIS +L+ FFT++ EEK A
Sbjct: 273 ALPASRQTTLFSATLPKSLVEFAKAGLHEPSLVRLDADSKISTELESVFFTVKTEEKEGA 332
Query: 255 LLYMIREHI-----------------------------------SSDQQTLIFVSTKHHV 279
LL +++E I S+ T+IF STKHHV
Sbjct: 333 LLQILQELIHMPAASSRSTENRADAEGDGKKKRKRFVNLPKNELSNPHSTIIFASTKHHV 392
Query: 280 EFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI 339
++L L G S YG +DQ AR+ V +FR ++ L+VTDVAARGIDIP+L NVI
Sbjct: 393 DYLASLLSALGYAVSYVYGTLDQVARRNQVEKFRTGESQILVVTDVAARGIDIPMLSNVI 452
Query: 340 NWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVL 399
N+DFPP+PK+FVHRVGR ARAGR G A+S V EDM YLLDL LFL R ++ E
Sbjct: 453 NFDFPPQPKVFVHRVGRTARAGRRGWAYSLVRLEDMPYLLDLQLFLG---RKLVTDGEAD 509
Query: 400 LDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLY 459
++ D A + I G + ++ ++ + +++++S DL ++++ +LY
Sbjct: 510 INQGKKKEGFDFA---NDVIIGALKRDALERCTEAITQVVNASHDLTAMKQVAARGEKLY 566
Query: 460 SKTKPLPSKESIRRGKDLPRE----GLHPMFKNVLEGGELMALAFSERLKAFRPKQTILE 515
KTK S ES++R K++ ++P+F + ++ E+ +RL +RP++T+ E
Sbjct: 567 QKTKTAASTESVKRSKEIVSGKHWMSVNPIFADEVDKLEMEKADMLKRLSNYRPQETVFE 626
Query: 516 --------AEG----EAARSKHLQGPSSQ----WVDV-MKKKRAV---HEKIINLVHQQR 555
+EG +A R K P Q +D+ K RA E+ N +
Sbjct: 627 IGQRGVNKSEGASIMKARREKIKIKPKYQEDTEMLDIPTAKPRARAEDDEEPGNNEWEDM 686
Query: 556 SSKSMEKE-VEPEADSLMAKEIKETH------GSKRKAKTFKDEEYFISSVPTNHHMEAG 608
+ +K V+ + DS+ +E++ SK K+KTF+D E+++ +P+
Sbjct: 687 DEDAQDKSAVDVDMDSVDEEELESVFKTKKSKRSKSKSKTFQDPEHYMGYMPST------ 740
Query: 609 LSVRSDQGFGLNR--LEAA---VLDLVADDS---GGLQKQKQVYHWDKRGKKYIKLNNGE 660
S+ D+G+ + EAA +DLV DD G KQ WD + KK++ N E
Sbjct: 741 -SLAEDRGYSVTNSFAEAARTVTMDLVNDDGNAFGEPSKQTTGLRWDPKAKKFVNRRNDE 799
Query: 661 RVSASG-KVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNAEETTSVPGGRH 718
S G K+++ ESG K+ A+ K+G ++ WK K L G E T GG
Sbjct: 800 DGSRGGSKLIRGESGQKIAASFKSGRFEGWK----KANKLSRMPRVGEMENTV---GGGM 852
Query: 719 LGGNNRKFRGGKNQQRSVPNAHVCSEI-KDLDQVRKERQKKADRIAFMKGKTQKGKKFSK 777
N GGK R H E K D+ R + + R+ K K GK + K
Sbjct: 853 ANKNGYPVAGGKIGGRMF---HKKVEAPKQADKARDDYHVRKKRVDEAKSKGLHGKGYGK 909
>gi|325094395|gb|EGC47705.1| ATP-dependent RNA helicase DBP10 [Ajellomyces capsulatus H88]
Length = 941
Score = 503 bits (1296), Expect = e-139, Method: Compositional matrix adjust.
Identities = 300/765 (39%), Positives = 423/765 (55%), Gaps = 116/765 (15%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+SL L+ + +AI RKG+ VPTPIQRKT+PL+L DVV MARTGSGKTAAF++P
Sbjct: 84 KGGGFQSLGLNAALLKAITRKGFSVPTPIQRKTIPLVLDDQDVVGMARTGSGKTAAFVIP 143
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M+++L H + G RALILSP+R+LALQTLK KELGR TDL+ LLVGGDS+E QFE +
Sbjct: 144 MIEKLKSHSAKFGSRALILSPSRELALQTLKVVKELGRGTDLKSVLLVGGDSLEEQFEYM 203
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
A NPDIIIATPGR +H E+ + L S+ YVVFDEAD LF MGFA QL +IL L +R
Sbjct: 204 ASNPDIIIATPGRFLHLKVEMS-LDLSSIRYVVFDEADRLFEMGFATQLTEILHGLPSSR 262
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSATLP +L EFA+AGL++P L+RLD ++KISPDL+ AFFT++ EK ALL+++
Sbjct: 263 QTLLFSATLPKSLVEFARAGLQEPILIRLDAESKISPDLQNAFFTVKSSEKEGALLHVLH 322
Query: 261 EHIS------------------------------------SDQQTLIFVSTKHHVEFLNV 284
E I ++ T+IF +TKHHV++L
Sbjct: 323 EVIKIPTGETEAQKRAKEEVKHSKKRKRSEFTSHSHKESPTEYSTIIFTATKHHVDYLTS 382
Query: 285 LFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFP 344
+ R G S YG +DQ ARKI V FRA T L+VTDVAARGIDIP+L NVIN+DFP
Sbjct: 383 ILRTSGFAVSYAYGSLDQTARKIEVQNFRAGITHILVVTDVAARGIDIPILSNVINYDFP 442
Query: 345 PKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDG 404
+PKIFVHRVGR ARAG+TG ++S + D YLLDL LFL +P+ + L +
Sbjct: 443 SQPKIFVHRVGRTARAGKTGWSYSLIRESDTPYLLDLQLFLGRPLILGRGSGQQLNYAEN 502
Query: 405 VMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKP 464
V + G P+ + ++ + +++D D+ + +LY +T+
Sbjct: 503 V-------------VVGSLPRDKVARYTEWMTKLLDEDVDVELQREVAMKGEKLYMRTRN 549
Query: 465 LPSKESIRRGKDLPREG----LHPMFKNVLEGGELMALAFSERLKAFRPKQTILEAEGEA 520
S ES +R K + +HP+F + E R+ ++P++TI E G
Sbjct: 550 SASGESAKRAKAVVESAEWMMVHPLFNDESSRLEEQRDKMLARVGGYKPQETIFEISGR- 608
Query: 521 ARSKHLQGPSSQWVDVMKKKRAVHE----------------------------------- 545
+ + + + +D+M+K R+ E
Sbjct: 609 ---RGGKNGNDEAIDMMRKMRSTLESKKKRKESAQNNTYPTDDLRVANHHPPDDNDGTDE 665
Query: 546 ------KIINLVHQQRSSKSMEKEVE-----PEADSLMAKEIKETHGSKRKAKTFKDEEY 594
+ N + S + + E+E P++ +K K+T+ K ++F + EY
Sbjct: 666 LGDFDDENDNAIAADNMSLASDSELEVTFSYPQSGKSNSK--KDTNNPNLK-ESFHNPEY 722
Query: 595 FISSVPTNHHMEAGLSVRSDQGFGLNRLEA---AVLDLVADDSG--GLQKQKQVYHWDKR 649
F+S P ++ + + G N +E+ A +DL D+S G + + + WDKR
Sbjct: 723 FMSYTPASNSLAEDRAYGVHSGSNTNFVESSRIATMDLAGDESTSRGFGEPRSIMRWDKR 782
Query: 650 GKKYIKLNNGERVSASGK---VVKTESGAKVKAT-KTGIYKKWKE 690
KKY+ N E S GK +V+ ESG K+ A+ ++G + WK+
Sbjct: 783 QKKYVSRRNDEDGSKGGKSDLLVRGESGVKIAASFRSGRFDAWKK 827
>gi|240275043|gb|EER38558.1| ATP-dependent RNA helicase DBP10 [Ajellomyces capsulatus H143]
Length = 941
Score = 503 bits (1295), Expect = e-139, Method: Compositional matrix adjust.
Identities = 300/765 (39%), Positives = 422/765 (55%), Gaps = 116/765 (15%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+ L L+ + +AI RKG+ VPTPIQRKT+PL+L DVV MARTGSGKTAAF++P
Sbjct: 84 KGGGFQPLGLNAALLKAITRKGFSVPTPIQRKTIPLVLDDQDVVGMARTGSGKTAAFVIP 143
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M+++L H + G RALILSP+R+LALQTLK KELGR TDL+ LLVGGDS+E QFE +
Sbjct: 144 MIEKLKSHSAKFGSRALILSPSRELALQTLKVVKELGRGTDLKSVLLVGGDSLEEQFEYM 203
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
A NPDIIIATPGR +H E+ + L S+ YVVFDEAD LF MGFA QL +IL L +R
Sbjct: 204 ASNPDIIIATPGRFLHLKVEMS-LDLSSIRYVVFDEADRLFEMGFATQLTEILHGLPSSR 262
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSATLP +L EFA+AGL++P L+RLD ++KISPDL+ AFFTL+ EK ALL+++
Sbjct: 263 QTLLFSATLPKSLVEFARAGLQEPILIRLDAESKISPDLQNAFFTLKSSEKEGALLHVLH 322
Query: 261 EHIS------------------------------------SDQQTLIFVSTKHHVEFLNV 284
E I ++ T+IF +TKHHV++L
Sbjct: 323 EVIKIPTGETEAQKRAKEEVKHSKKRKRSEFTSHSHKESPTEYSTIIFTATKHHVDYLTS 382
Query: 285 LFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFP 344
+ R G S YG +DQ ARKI V FRA T L+VTDVAARGIDIP+L NVIN+DFP
Sbjct: 383 ILRTSGFAVSYAYGSLDQTARKIEVQNFRAGITHILVVTDVAARGIDIPILSNVINYDFP 442
Query: 345 PKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDG 404
+PKIFVHRVGR ARAG+TG ++S + D YLLDL LFL +P+ + L +
Sbjct: 443 SQPKIFVHRVGRTARAGKTGWSYSLIRESDTPYLLDLQLFLGRPLILGRGSGQQLNYAEN 502
Query: 405 VMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKP 464
V + G P+ + ++ + +++D D+ + +LY +T+
Sbjct: 503 V-------------VVGSLPRDKVARYTEWMTKLLDEDVDVELQREVAMKGEKLYMRTRN 549
Query: 465 LPSKESIRRGKDLPREG----LHPMFKNVLEGGELMALAFSERLKAFRPKQTILEAEGEA 520
S ES +R K + +HP+F + E R+ ++P++TI E G
Sbjct: 550 SASGESAKRAKAVVESAEWMMVHPLFNDESSRLEEQRDKMLARVGGYKPQETIFEISGR- 608
Query: 521 ARSKHLQGPSSQWVDVMKKKRAVHE----------------------------------- 545
+ + + + +D+M+K R+ E
Sbjct: 609 ---RGGKNGNDEAIDMMRKMRSTLESKKKRKESAQNNTYPTDDLRVANHHPPDDNDGTDE 665
Query: 546 ------KIINLVHQQRSSKSMEKEVE-----PEADSLMAKEIKETHGSKRKAKTFKDEEY 594
+ N + S + + E+E P++ +K K+T+ K ++F + EY
Sbjct: 666 LGDFDDENDNAIAADNMSLASDSELEVTFSYPQSGKSNSK--KDTNNPNLK-ESFHNPEY 722
Query: 595 FISSVPTNHHMEAGLSVRSDQGFGLNRLEA---AVLDLVADDSG--GLQKQKQVYHWDKR 649
F+S P ++ + + G N +E+ A +DL D+S G + + + WDKR
Sbjct: 723 FMSYTPASNSLAEDRAYGVHSGSNTNFVESSRIATMDLAGDESTSRGFGEPRSIMRWDKR 782
Query: 650 GKKYIKLNNGERVSASGK---VVKTESGAKVKAT-KTGIYKKWKE 690
KKY+ N E S GK +V+ ESG K+ A+ ++G + WK+
Sbjct: 783 QKKYVSRRNDEDGSKGGKSDLLVRGESGVKIAASFRSGRFDAWKK 827
>gi|342884574|gb|EGU84781.1| hypothetical protein FOXB_04676 [Fusarium oxysporum Fo5176]
Length = 897
Score = 503 bits (1294), Expect = e-139, Method: Compositional matrix adjust.
Identities = 312/808 (38%), Positives = 450/808 (55%), Gaps = 105/808 (12%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+++ L+ N+ +AI RKG+ VPTPIQRK +PLIL D+V MARTGSGKTAAF++P
Sbjct: 81 KGGGFQAMGLNSNLLKAITRKGFSVPTPIQRKAIPLILDRKDLVGMARTGSGKTAAFVIP 140
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M++RL H + G RALILSP+R+LA+QTLK KE R TDL+ LLVGGDS+E QF +
Sbjct: 141 MIERLRAHSARFGTRALILSPSRELAIQTLKVVKEFSRGTDLKCVLLVGGDSLEEQFGSM 200
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
A NPDI+IATPGR +H E+ + L S++YVVFDEAD LF MGFA QL +IL L +R
Sbjct: 201 AANPDIVIATPGRFLHLKVEMS-LDLSSIKYVVFDEADRLFEMGFAAQLTEILHALPPSR 259
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
Q+LLFSATLP++L EFA+AGL+DP LVRLD +TK+SPDL+ AFF+++ EK +LL+++
Sbjct: 260 QSLLFSATLPASLVEFARAGLQDPSLVRLDAETKVSPDLESAFFSVKGAEKEGSLLHILH 319
Query: 261 EHIS------------------------------SDQQTLIFVSTKHHVEFLNVLFREEG 290
+ I ++ T+IF +TKHHVE+L L G
Sbjct: 320 DVIKMPVGAPVSAEDSETGSKKRKRGADGSSGKPTEHSTIIFTATKHHVEYLANLLIYAG 379
Query: 291 LEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIF 350
S YG +DQ AR+I V FR KT L+VTDVAARGIDIP+L NVIN+DFPP+PK+F
Sbjct: 380 FAVSYVYGSLDQTARRIQVEDFRRGKTNILVVTDVAARGIDIPVLANVINFDFPPQPKVF 439
Query: 351 VHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKID 410
VHRVGR ARAG+ G ++S V D YLLDL LFL K + + G +K +
Sbjct: 440 VHRVGRTARAGQRGWSYSLVRDTDAPYLLDLQLFLGKRL------------VIGQEAK-N 486
Query: 411 QAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKES 470
+ A+ + + G + ++ + + + S D+++L+ A +LY +T+ + +S
Sbjct: 487 PSFAD-DVVVGALKRDPVEAQVEWFNKALYESEDISALRGVAIKAEKLYLRTRNSAASQS 545
Query: 471 IRRGKDL-PREG---LHPMFKNVLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHL 526
+R K+L EG LH +F ++G E R+ FRP++TI E G +
Sbjct: 546 AKRSKELVGSEGWTQLHALFGEDVDGAEQARANMLARISGFRPQETIFEIGGRRDKG--- 602
Query: 527 QGPSSQWVDVMKKKR------------------------AVHEKIINLVHQQRSSKSMEK 562
+++ +VMK+ R V ++ + + +++
Sbjct: 603 ---TTEAAEVMKQLRKRITPRRQTEKKDDDDFDGIDDDVPVGAEVDAMSDEDEDQMDVDE 659
Query: 563 EVEPEADSLMAKEIKETHGSKRKAKT-FKDEEYFISSVPT--NHHMEAGLSVRSDQGFGL 619
E D L E+ ++G+ +K +T ++D E F+S P N E G V S
Sbjct: 660 APEESDDGL---EVTVSNGNSKKGQTDWRDSEVFMSYTPRTFNAAEERGYGVSSGGQDSS 716
Query: 620 NRLEAA---VLDLVADDSGGL--QKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESG 674
N +EAA +DL D++ + + WDK+ KKY+ N + S K+++ ESG
Sbjct: 717 NFVEAARGVTMDLTNDENAKSFGEPTRSKMRWDKKSKKYVSRENDDDGSKGAKMIRGESG 776
Query: 675 AKVKAT-KTGIYKKWK--ERSHKKVYLKGASNEGNAEETTSVPGGRHLGGNNRKFRGGKN 731
K+ A+ ++G + KWK R K ++ A G A +P G K+
Sbjct: 777 VKIAASFQSGRFDKWKRANRLGKLPHVGEAERPGGANHVAHIPSGVRY----------KH 826
Query: 732 QQRSVPNAHVCSEIKDLDQVRKERQKKA 759
+Q P + +D QVRK+R +A
Sbjct: 827 KQERAPKE--ADKYRDDFQVRKKRVDEA 852
>gi|322700977|gb|EFY92729.1| ATP-dependent RNA helicase dbp10 [Metarhizium acridum CQMa 102]
Length = 894
Score = 502 bits (1292), Expect = e-139, Method: Compositional matrix adjust.
Identities = 304/766 (39%), Positives = 428/766 (55%), Gaps = 98/766 (12%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+++ L+ N+ +AI RKG+ VPTPIQRKT+PL+L DVV MARTGSGKT AF++P
Sbjct: 81 KGGGFQAMGLNSNLLKAIARKGFSVPTPIQRKTIPLVLDRKDVVGMARTGSGKTGAFVIP 140
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M+++L H + G RALILSP+R+LA+QTLK KE R TDL+ LLVGGDS+E QF +
Sbjct: 141 MIEKLRAHSGRFGSRALILSPSRELAIQTLKVVKEFARGTDLKAVLLVGGDSLEEQFGYM 200
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
A NPDI+IATPGR +H E+ + L S++YVVFDEAD LF MGFA QL +IL L +R
Sbjct: 201 AANPDIVIATPGRFLHLKVEMS-LDLSSIKYVVFDEADRLFEMGFATQLTEILHALPPSR 259
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSATLP++L EFA+AGL+DP LVRLD +TK+SPDL+ AFF+++ EK ALL+++
Sbjct: 260 QTLLFSATLPASLVEFARAGLQDPSLVRLDAETKVSPDLESAFFSVKGAEKEGALLHILH 319
Query: 261 EHIS--------------------------------SDQQTLIFVSTKHHVEFLNVLFRE 288
+ I ++ T+IF +TKHHVE+L + +
Sbjct: 320 DVIKMPMGAPENAKQDSEKGSKKRKRGESGSGSGKPTEHSTIIFTATKHHVEYLASVLQR 379
Query: 289 EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPK 348
G S YG +DQ AR+ V FR KT L+VTDVAARGIDIP+L NVIN+DFP +PK
Sbjct: 380 AGFSVSHVYGSLDQTARRNQVEDFRRGKTNILVVTDVAARGIDIPVLANVINYDFPSQPK 439
Query: 349 IFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSK 408
IFVHRVGR ARAG+ G ++S V D YLLDL LFL + ++L +G
Sbjct: 440 IFVHRVGRTARAGQRGWSYSLVRDSDAPYLLDLQLFLGR---------RLVLGREG---- 486
Query: 409 IDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSK 468
D+ + + G + ++ + + +++ D+ +L+ A +LY KT+ S
Sbjct: 487 -DEPSFASDVVVGSLRRDSVESNVEWMNKLLREDVDVGTLRGVAAKAEKLYLKTRNSASS 545
Query: 469 ESIRRGKDLPREG----LHPMFKNVLEGGELMALAFSERLKAFRPKQTILEAEGEAARSK 524
+S +R +++ LH +F N ++ E R+ FRP++TI E
Sbjct: 546 QSAKRSREIVSSTGWNQLHRLFGNDVDNMEQARADMLARISGFRPQETIFEIS------- 598
Query: 525 HLQGPSSQWVDVMK--------KKRAVHEKIINLVHQQRSSKS----MEKEVEPEADSLM 572
H S+ +VMK K R ++ ++ +KS M+ + + EA
Sbjct: 599 HTDKSHSEAAEVMKQLRKKITPKNRQAQKQESDIEDDDMPTKSNGSKMDMDSDQEASDNG 658
Query: 573 AKEIKETHG--------------SKRKAKTFKDEEYFISSVPTNHHM--EAGLSVRSDQG 616
++ +T G SKR ++D E F+S P H++ E G V S G
Sbjct: 659 SQGADQTSGWDEDELEVTVSNTDSKRGKTDWRDSEVFMSYTPRTHNVAEERGYGVHSG-G 717
Query: 617 FGLNRLEAAVLDLVADDSGGL--QKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESG 674
F + A +DL D++ Q + WD + KKY+ +N E S K++ ESG
Sbjct: 718 F-VEAARDATMDLTNDETAKSFGQPSRSKMRWDTKSKKYVSRDNDEDGSKGSKMITGESG 776
Query: 675 AKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNAEE---TTSVPGG 716
K+ AT ++G Y KWK K L+ G AE+ T +P G
Sbjct: 777 VKIAATFQSGRYDKWK----KAQRLRSLPRVGEAEKPGATQGLPSG 818
>gi|226291932|gb|EEH47360.1| ATP-dependent RNA helicase DBP10 [Paracoccidioides brasiliensis
Pb18]
Length = 895
Score = 500 bits (1287), Expect = e-138, Method: Compositional matrix adjust.
Identities = 288/721 (39%), Positives = 402/721 (55%), Gaps = 69/721 (9%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+S+ L+ + +AI RKG+ VPTPIQRKT+PL+L DVV MARTGSGKTAAF++P
Sbjct: 80 KGGGFQSMGLNATLLKAIARKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVIP 139
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M+++L H + G RALI+SP+R+LALQTLK KELGR TDL+ LLVGGDS+E QFE +
Sbjct: 140 MIEKLKSHSAKFGARALIMSPSRELALQTLKVVKELGRGTDLKCVLLVGGDSLEEQFEYM 199
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
+ NPDIIIATPGR +H E+ + L S+ YVVFDEAD LF MGF+ QL +IL L +R
Sbjct: 200 SGNPDIIIATPGRFLHLKVEMS-LDLSSIRYVVFDEADRLFEMGFSAQLTEILHVLPSSR 258
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSATLP +L EFA+AGL++P L+RLD ++KISPDL+ FF+++ EK ALL+++
Sbjct: 259 QTLLFSATLPKSLVEFARAGLQEPTLIRLDAESKISPDLQNGFFSIKSSEKEGALLHLLH 318
Query: 261 EHIS------------------------------------SDQQTLIFVSTKHHVEFLNV 284
+ I ++ T+IF +TKHHV++L
Sbjct: 319 DIIKIPTGETEAGKRTKEELHNPKKRKRSDTVLKSHKESPTEHSTIIFTATKHHVDYLTS 378
Query: 285 LFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFP 344
+ R+ G S YG +DQ ARKI V FR T L+VTDVAARGIDIP+L NVIN+DFP
Sbjct: 379 VLRQSGFAVSYAYGSLDQTARKIEVQNFRCGITHILVVTDVAARGIDIPILSNVINYDFP 438
Query: 345 PKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDG 404
+ KIFVHRVGR ARAGRTG ++S + D YLLDL LFL +P+
Sbjct: 439 SQSKIFVHRVGRTARAGRTGWSYSLIRESDAPYLLDLQLFLGRPL--------------- 483
Query: 405 VMSKIDQAIAN--GETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKT 462
++ + N + + G + + V +++D D+ + +LY +T
Sbjct: 484 ILGRASSQPVNYAEDVVVGSLQGDQVSRYCEWVSKLLDEDVDVALQREVAMKGEKLYMRT 543
Query: 463 KPLPSKESIRRGKDLPREG----LHPMFKNVLEGGELMALAFSERLKAFRPKQTILEAEG 518
+ S ES +R K+L +HP+F + E RL ++P++TI E G
Sbjct: 544 RNSASSESAKRAKELVGSDEWMMVHPLFNDESSRIEEEREKMLARLGGYKPQETIFEIGG 603
Query: 519 EAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKSMEKEVEPEADSLMAKEIKE 578
Q D + + + N S E EV + K+
Sbjct: 604 RRGGVVDCQQNDDNEGDELADFDGDDDNVGNADMSLASDS--ELEVTFSYPQSSKSKSKK 661
Query: 579 THGSKRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEA---AVLDLVADDSG 635
+ +F++ EYF+S P ++ + + G N +EA A +DL D+S
Sbjct: 662 AANNPTLGDSFQNPEYFMSYTPASNSLVEDRAYGVHSGSNTNFVEASRSATMDLAGDESA 721
Query: 636 --GLQKQKQVYHWDKRGKKYIKLNNGERVSASGK---VVKTESGAKVKAT-KTGIYKKWK 689
G + + + WDKR KKY+ N E S GK +V+ ESG K+ A+ ++G + WK
Sbjct: 722 SRGFGEPRSIMRWDKRQKKYVSRRNDEDGSKGGKRDLLVRGESGTKIAASFRSGRFDAWK 781
Query: 690 E 690
+
Sbjct: 782 K 782
>gi|340960309|gb|EGS21490.1| hypothetical protein CTHT_0033480 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 924
Score = 499 bits (1286), Expect = e-138, Method: Compositional matrix adjust.
Identities = 320/833 (38%), Positives = 463/833 (55%), Gaps = 108/833 (12%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+++ L N+ RAI RKG+ VPTPIQRKT+PLIL DVV MARTGSGKTAAF++P
Sbjct: 88 KGGGFQAMGLDANLLRAIARKGFSVPTPIQRKTIPLILERRDVVGMARTGSGKTAAFVIP 147
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M++RL H + G RAL+LSP+R+LALQTLK KELG+ TDL+ LLVGGDS+E QF +
Sbjct: 148 MIERLKAHSARFGARALVLSPSRELALQTLKVVKELGKGTDLKTVLLVGGDSLEEQFGLM 207
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
A NPDIIIATPGR +H E+ + L S++YVVFDEAD LF MGFA QL +IL L +R
Sbjct: 208 ATNPDIIIATPGRFLHLKVEM-SLDLSSIKYVVFDEADRLFEMGFAAQLTEILHALPPSR 266
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSATLPS+L EF +AGL+DP LVRLD +TK+SPDL+ AFF+++ EK ALL+++
Sbjct: 267 QTLLFSATLPSSLVEFTRAGLQDPVLVRLDAETKVSPDLESAFFSVKSGEKEGALLHILY 326
Query: 261 EHIS----------------------------------SDQQTLIFVSTKHHVEFLNVLF 286
+ I ++ T+IF +TKHHVE+++ L
Sbjct: 327 DIIKMPLGDPPRSENDEEQPKSKKRKRGSDKPNFKEKPTEHSTIIFTATKHHVEYISNLL 386
Query: 287 REEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPK 346
R G S YG +DQ ARKI V FR +T L+VTDVAARGIDIP+L NVIN+DFPP+
Sbjct: 387 RLAGFSVSYVYGSLDQTARKIQVDNFRRGRTNILVVTDVAARGIDIPVLANVINYDFPPQ 446
Query: 347 PKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVM 406
PKIFVHRVGR ARAG+ G A++ V D+ YLLDL LFL + + E++ D
Sbjct: 447 PKIFVHRVGRTARAGQRGWAYALVRESDLPYLLDLQLFLGRRLVLGREEKDPSFARD--- 503
Query: 407 SKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLP 466
+ G + ++ + V +++ + D+ +L+R A +LY KT+
Sbjct: 504 -----------IVVGSLKRVELENNVEWVNKVLHENEDIGALKRVTAKAEKLYMKTRNPA 552
Query: 467 SKESIRRGKD-LPREG---LHPMFKNVLEGGELMALAFSERLKAFRPKQTILE--AEGEA 520
S +S +R ++ + +G LH +F E + ++ ++P++TI E +G+
Sbjct: 553 SSQSAKRAREVIVSKGWGQLHAIFGEEAANEEQVRDNLLSKITGYKPQETIFEIGPKGKV 612
Query: 521 ARSKHLQGPSSQWVDVMKKKRAVHEKIINLV----------HQQRSSKSMEKEVEPEA-- 568
+++K + S + +K ++ +V + +R + E+ V+ +
Sbjct: 613 SQNKAAEAVRSFRQRIGPRKLPKQDEDTEMVDAEALPDHVGNAERKGQEEEESVDEDGAT 672
Query: 569 -DSLMAK-------------EIKETHGSKRK--AKTFKDEEYFISSVP--TNHHMEAGLS 610
DS++ K E+ T+ +K K +F D E ++S P T+ E
Sbjct: 673 QDSVLWKHDSNSDSNSESELEVTVTNSAKAKKGQTSFADPEVYMSYTPRTTSLAEEHAYG 732
Query: 611 VRSDQGFGLNRLEA---AVLDLVADDSG---GLQKQKQVYHWDKRGKKYIKLNNGERVSA 664
V S N +EA A +DL D+ GL + + Y WDKR KY+ N + S
Sbjct: 733 VHSGGVRSSNFVEAARDATMDLTNDEGAKGFGLPSRPK-YRWDKRHSKYVSTANDDDGSK 791
Query: 665 SGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLK--GASNEGNAEETTSVPGGRHLGG 721
K+++ ESG K+ A+ K+G ++KW+++ H+ L G + N S+P G
Sbjct: 792 GVKMIRGESGVKIAASFKSGRFEKWRQQ-HRLGRLPQVGEMEKANLVRNFSLPSGPRF-- 848
Query: 722 NNRKFRGGKNQQRSVPNAHVCSEIKDLDQVRKERQKKADRIAFMKGKTQKGKK 774
K++Q P + +D +VRK+R +A K K +G +
Sbjct: 849 --------KHKQMKAPKE--ADKWRDDYEVRKKRVAEAKEKRIGKFKDGEGNR 891
>gi|242803555|ref|XP_002484198.1| ATP dependent RNA helicase (Dbp10), putative [Talaromyces
stipitatus ATCC 10500]
gi|218717543|gb|EED16964.1| ATP dependent RNA helicase (Dbp10), putative [Talaromyces
stipitatus ATCC 10500]
Length = 945
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 296/756 (39%), Positives = 411/756 (54%), Gaps = 106/756 (14%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+++ L+ + +AI RKG+ VPTPIQRKT+P+IL DVV MARTGSGKTAAF++P
Sbjct: 94 KGGGFQAMGLNAQLLKAIARKGFSVPTPIQRKTIPVILDDQDVVGMARTGSGKTAAFVIP 153
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M+++L H + GVR LILSP+R+LALQTLK KELGR TDL+ LLVGGDS+E QF +
Sbjct: 154 MIEKLKSHSGKVGVRGLILSPSRELALQTLKVVKELGRGTDLKAVLLVGGDSLEEQFSLM 213
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
NPDI+IATPGR +H E+ ++ L S++YVVFDEAD LF MGFA QL +IL L R
Sbjct: 214 VGNPDIVIATPGRFLHLKVEM-NLDLSSIKYVVFDEADRLFEMGFAAQLTEILHGLPATR 272
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSATLP +L EFA+AGL+DP L+RLD + KISPDL+ AFF+++ +K ALLY++
Sbjct: 273 QTLLFSATLPKSLVEFARAGLQDPSLIRLDTEGKISPDLQNAFFSVKTADKEGALLYILH 332
Query: 261 EHIS-----------------------------------------SDQQTLIFVSTKHHV 279
E I + T+IF +TKHHV
Sbjct: 333 EVIKIPTGPTGVSLRSNEEDDDKGKRNKKRKRSDSNKPGKNTESPTKHSTIIFAATKHHV 392
Query: 280 EFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI 339
+++ + RE G S YG +DQ AR I V RFR T L+VTDVAARGIDIP+L NVI
Sbjct: 393 DYIVSILREAGFAVSYAYGSLDQTARNIQVQRFRNGATHILVVTDVAARGIDIPILANVI 452
Query: 340 NWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVL 399
N+DFP +PK+FVHRVGR ARAG+ G ++S V D YLLDL LFL + + E EV
Sbjct: 453 NYDFPSQPKVFVHRVGRTARAGQKGWSYSLVRDADAPYLLDLQLFLGRKLVLGRPETEVN 512
Query: 400 LDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLY 459
E + G P+ + + + + +D+S D+ + + +LY
Sbjct: 513 FAE--------------EVVVGGIPRDTLSSHCEWITKTLDNSPDIQAQRGVANRGEKLY 558
Query: 460 SKTKPLPSKESIRRGKDLPRE----GLHPMFKNVLEGGELMALAFSERLKAFRPKQTILE 515
+T+ S ES +R K++ LH +F E+ RL +RP++TI E
Sbjct: 559 MRTRNAASLESAKRAKEVVTSDKWTSLHALFNGEDNQMEVEREKMLARLGGYRPQETIFE 618
Query: 516 AEGEAARSKHLQGPSSQWVDVMKKKRAVHEK--------------------IINLVH--- 552
G K + + + +K+ R+ +K +N+ H
Sbjct: 619 IGGRRGGKKG----TDEAFETIKRVRSALDKKKKTSATATETADADGDEGEDVNMDHGFS 674
Query: 553 ---------QQRSSKSMEKEVEPE---ADSLMAKEIKETHGSKRKAKTFKDEEYFISSVP 600
+ SM E E E + + + K GS A F++ +YF+S P
Sbjct: 675 DEDDNEAPQDNLDNMSMASESELEVTFSQYSQSNKNKSKKGSGTDANAFQNPDYFMSYTP 734
Query: 601 TNHHMEA----GLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKL 656
+ + G+ S F L + A +DL AD+ G + + WDKR KKY+
Sbjct: 735 ADASLAEDRAYGVHSGSSSNFALASRD-ATMDLTADEKAGFGEAQSSMRWDKRHKKYVSR 793
Query: 657 NNGERVSASGK-VVKTESGAKVKAT-KTGIYKKWKE 690
N E S G +++ ESG K+ A+ ++G + WK+
Sbjct: 794 RNDEDGSRGGSALIRGESGTKIAASFRSGRFDAWKK 829
>gi|121699888|ref|XP_001268209.1| dead box ATP-dependent rna helicase [Aspergillus clavatus NRRL 1]
gi|134034061|sp|A1CTZ6.1|DBP10_ASPCL RecName: Full=ATP-dependent RNA helicase dbp10
gi|119396351|gb|EAW06783.1| dead box ATP-dependent rna helicase [Aspergillus clavatus NRRL 1]
Length = 935
Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust.
Identities = 297/757 (39%), Positives = 419/757 (55%), Gaps = 102/757 (13%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+++ LS N+ +AI RKG+ VPTPIQRKT+P+I+ DVV MARTGSGKTAAF++P
Sbjct: 87 KGGGFQAMGLSANLLKAIARKGFSVPTPIQRKTIPVIMDDQDVVGMARTGSGKTAAFVIP 146
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M+++L H + G R LILSP+R+LALQTLK KELG+ TDL+ LLVGGDS+E QF +
Sbjct: 147 MIEKLRSHSTKVGARGLILSPSRELALQTLKVVKELGKGTDLKCVLLVGGDSLEEQFTMM 206
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
A NPDI+IATPGR +H E+ ++ L S+ YVVFDEAD LF MGFA QL +IL L NR
Sbjct: 207 AGNPDIVIATPGRFLHLKVEM-NLDLYSIRYVVFDEADRLFEMGFAAQLTEILHGLPPNR 265
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSATLP +L EFA+AGL++P L+RLD ++KISPDL+ AFF+++ EK ALLY++
Sbjct: 266 QTLLFSATLPKSLVEFARAGLQEPTLIRLDTESKISPDLQNAFFSIKSSEKEGALLYILH 325
Query: 261 EHIS------------------------------------------SDQQTLIFVSTKHH 278
E I + T++F +TKHH
Sbjct: 326 EVIKMPTGPTEMAQQRQGEDASARFSKANKRKRAEMEKAVNTKESPTQHSTIVFAATKHH 385
Query: 279 VEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNV 338
V++L L E G S YG +DQ ARKI V FR+ + L+VTDVAARGIDIP+L NV
Sbjct: 386 VDYLYSLLHEAGFAVSYVYGALDQTARKIQVQNFRSGLSNILVVTDVAARGIDIPILANV 445
Query: 339 INWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEV 398
IN+DFP +PKIF+HRVGR ARAGR G ++S V D YLLDL LFL + + V
Sbjct: 446 INYDFPSQPKIFIHRVGRTARAGRKGWSYSLVRDADAPYLLDLQLFLGRRL--------V 497
Query: 399 LLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRL 458
+ +G D + + G P+ + + V +++ AD+ + + T +L
Sbjct: 498 VGRENG-----DHVNFAEDVVAGGLPRDGLSQNCEWVTKVLGDDADIAAQRTVATKGEKL 552
Query: 459 YSKTKPLPSKESIRRGKDLPRE----GLHPMFKNVLEGGELMALAFSERLKAFRPKQTIL 514
Y +T+ S ES +R K + +HP+F++ E R+ +RP +TI
Sbjct: 553 YMRTRNSASLESAKRAKQVVSSDHWTSIHPLFQDESSNLEAEREKMLARIGGYRPSETIF 612
Query: 515 E------AEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKSMEKEV---E 565
E + E+ + + ++ KK+ + K L K+ E E E
Sbjct: 613 EVNTRRIGKQESEEALNTIKRVRTTLETKKKRSKANAKSEFLEDAPEGLKTGEGEAGKNE 672
Query: 566 PEADSLMAKEI-------------------------KETHGSKRK---AKTFKDEEYFIS 597
EA A +I +++G+K K A +F++ +YF+S
Sbjct: 673 DEAAFSDADDIDAPTGVADDMSLASDSELEVTFSSYSQSNGNKSKKASAASFQNPDYFMS 732
Query: 598 SVPTNHHMEAGLSVRSDQGFGLNRLEA---AVLDLVADD-SGGLQKQKQVYHWDKRGKKY 653
P N+ + + G N +A A +DL D+ S G + + + WDKR KKY
Sbjct: 733 YTPNNNSLAEDRAYGVHSGTNSNFAQASRSATMDLAGDEGSRGFGEPRTMMRWDKRHKKY 792
Query: 654 IKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWK 689
+ N E S ++V+ ESGAK+ ++ ++G + WK
Sbjct: 793 VARQNDEDGSKGTRLVRGESGAKIASSFRSGRFDAWK 829
>gi|322706702|gb|EFY98282.1| ATP-dependent RNA helicase dbp10 [Metarhizium anisopliae ARSEF 23]
Length = 892
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 294/734 (40%), Positives = 416/734 (56%), Gaps = 89/734 (12%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+++ L+ N+ +AI RKG+ VPTPIQRKT+PL+L DVV MARTGSGKT AF++P
Sbjct: 81 KGGGFQAMGLNSNLLKAIARKGFSVPTPIQRKTIPLVLDRKDVVGMARTGSGKTGAFVIP 140
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M+++L H + G RALILSP+R+LA+QTLK KE R TDL+ LLVGGDS+E QF +
Sbjct: 141 MIEKLRAHSGRFGSRALILSPSRELAIQTLKVVKEFARGTDLKAILLVGGDSLEEQFGYM 200
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
A NPDI+IATPGR +H E+ + L S++YVVFDEAD LF MGFA QL +IL L +R
Sbjct: 201 AANPDIVIATPGRFLHLKVEMS-LDLSSIKYVVFDEADRLFEMGFATQLTEILHALPPSR 259
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSATLP++L EFA+AGL+DP LVRLD +TK+SPDL+ AFF+++ EK ALL+++
Sbjct: 260 QTLLFSATLPASLVEFARAGLQDPSLVRLDAETKVSPDLESAFFSVKGAEKEGALLHILH 319
Query: 261 EHIS------------------------------SDQQTLIFVSTKHHVEFLNVLFREEG 290
+ I ++ T+IF +TKHHVE+L + + G
Sbjct: 320 DVIKMPMGTPEIAKQDSEKASKKRKRGESGSGKPTEHSTIIFTATKHHVEYLANVLQRAG 379
Query: 291 LEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIF 350
S YG +DQ AR+ V FR +T L+VTDVAARGIDIP+L NVIN+DFP +PKIF
Sbjct: 380 FAVSHVYGSLDQTARRNQVEDFRRGRTNILVVTDVAARGIDIPVLANVINYDFPSQPKIF 439
Query: 351 VHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKID 410
VHRVGR ARAG+ G ++S V D YLLDL LFL + + EE D
Sbjct: 440 VHRVGRTARAGQRGWSYSLVRDSDAPYLLDLQLFLGRRLVLGQEGEEPSFASD------- 492
Query: 411 QAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKES 470
I G + +++ + + +++ D+++L+ A +LY KT+ S +S
Sbjct: 493 -------VIVGSLKRDLVESNVEWMNKLLHEDVDVSTLRGVAAKAEKLYLKTRNSASSQS 545
Query: 471 IRRGKDLPREG----LHPMFKNVLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHL 526
+R +++ LH +F + ++ E R+ +F+P++TI E H
Sbjct: 546 AKRSREIVSSTGWNQLHRLFGDDVDNMEQARADMLARISSFKPQETIFEIS-------HT 598
Query: 527 QGPSSQWVDVMK--------KKRAVHEKIINLVHQQRSSKS----MEKEVEPEADSLMAK 574
S+ +VMK K R ++ ++ +KS M+ + + EA ++
Sbjct: 599 DKSHSEAAEVMKQLRKKITPKNRQAQKQESDIEDDDIPTKSNDNKMDMDSDQEASDNGSQ 658
Query: 575 EIKETHG--------------SKRKAKTFKDEEYFISSVPTNHHM--EAGLSVRSDQGFG 618
+T+G SKR ++D E F+S P H+ E G V S GF
Sbjct: 659 GADQTNGWDEDELEVTVSNTDSKRGKTDWRDSEVFMSYTPRTHNAAEERGYGVHS-GGF- 716
Query: 619 LNRLEAAVLDLVADDSGGL--QKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAK 676
+ A +DL D++ Q + WD + KKY+ +N E S K++ ESG K
Sbjct: 717 VEAARDAAMDLTNDETAKSFGQPSRSKMRWDTKSKKYVSRDNDEDGSKGKKMITGESGVK 776
Query: 677 VKAT-KTGIYKKWK 689
+ AT ++G Y KWK
Sbjct: 777 IAATFQSGRYDKWK 790
>gi|46136501|ref|XP_389942.1| hypothetical protein FG09766.1 [Gibberella zeae PH-1]
gi|91206536|sp|Q4HZ42.1|DBP10_GIBZE RecName: Full=ATP-dependent RNA helicase DBP10
Length = 897
Score = 497 bits (1280), Expect = e-137, Method: Compositional matrix adjust.
Identities = 298/763 (39%), Positives = 427/763 (55%), Gaps = 88/763 (11%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+++ L+ N+ +AI RKG+ VPTPIQRK +PLIL D+V MARTGSGKTAAF++P
Sbjct: 80 KGGGFQAMGLNNNLLKAITRKGFSVPTPIQRKAIPLILDRKDLVGMARTGSGKTAAFVIP 139
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M+++L H + G RALI+SP+R+LA+QTLK KE R TDL+ LLVGGDS+E QF +
Sbjct: 140 MIEKLRAHSARFGTRALIMSPSRELAIQTLKVVKEFSRGTDLKCVLLVGGDSLEEQFGYM 199
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
A NPDI+IATPGR +H E+ + L S++YVVFDEAD LF MGFA QL +IL L +R
Sbjct: 200 AANPDIVIATPGRFLHLKVEMS-LDLSSIKYVVFDEADRLFEMGFAAQLTEILHALPPSR 258
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
Q+LLFSATLP++L EFA+AGL+DP LVRLD + K+SPDL+ AFF ++ EK +LL+++
Sbjct: 259 QSLLFSATLPASLVEFARAGLQDPSLVRLDAEQKVSPDLESAFFAVKGAEKEGSLLHILH 318
Query: 261 EHIS-------------------------------SDQQTLIFVSTKHHVEFLNVLFREE 289
+ I ++ T+IF +TKHHVE+L L
Sbjct: 319 DVIKMPVGSPEGVNNDSEKGSKKRKRGADGGSGKPTEHSTIIFTATKHHVEYLANLLIYA 378
Query: 290 GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKI 349
G S YG +DQ AR+I V FR KT L+VTDVAARGIDIP+L NVIN+DFPP+PK+
Sbjct: 379 GFAVSYVYGSLDQTARRIQVEDFRMGKTNILVVTDVAARGIDIPVLANVINFDFPPQPKV 438
Query: 350 FVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKI 409
FVHRVGR ARAG+ G ++S V D YL+DL LFL K + + D V+ +
Sbjct: 439 FVHRVGRTARAGQRGWSYSLVRDTDAPYLIDLQLFLGKKLVVGQETKNPSFSEDVVVGAL 498
Query: 410 DQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKE 469
+ G + + + S D+N+L+ A +LY +T+ + +
Sbjct: 499 KRDPVEGHVEW--------------FNKSLHESEDINALRGVAVKAEKLYLRTRNSAASQ 544
Query: 470 SIRRGKDL-PREG---LHPMFKNVLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKH 525
S +R K+L +G LHP+F ++G E + R+ FRP++TI E G +
Sbjct: 545 SAKRSKELVGSQGWTQLHPLFGEDVDGAEQARVDMLARISGFRPQETIFEIGGRRDKG-- 602
Query: 526 LQGPSSQWVDVMKKKR------------------AVHEKIINLVHQQRSSKSME---KEV 564
+++ +VMK+ R + + I S E E+
Sbjct: 603 ----TTEAAEVMKQLRKRITPRRQTEAKADDDFEGIGDDIPAAAEAGADSDEEEVVMDEM 658
Query: 565 EPEADSLMAKEIKETHGSKRKAKT-FKDEEYFISSVPT--NHHMEAGLSVRSDQGFGLNR 621
+ + +S E+ T+ + +K +T ++D E F+S P N E G V S N
Sbjct: 659 DVDEESDDGLEVTVTNTNSKKGRTDWRDSEVFMSYTPRTFNAAEERGYGVSSGGQDPSNF 718
Query: 622 LEAA---VLDLVADDSGGL--QKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAK 676
+EAA +DL D++ + + WDK+ +KY+ N E S K+++ ESG K
Sbjct: 719 VEAARGVTMDLTNDENAKSFGEPTRSKMRWDKKSRKYVSRENDEDGSKGAKMIRGESGVK 778
Query: 677 VKAT-KTGIYKKWK--ERSHKKVYLKGASNEGNAEETTSVPGG 716
+ A+ ++G + KWK R K ++ G+A ++P G
Sbjct: 779 IAASFQSGRFDKWKRANRLGKLPHVGEQVRPGSASHAANLPSG 821
>gi|408398412|gb|EKJ77543.1| hypothetical protein FPSE_02293 [Fusarium pseudograminearum CS3096]
Length = 897
Score = 497 bits (1279), Expect = e-137, Method: Compositional matrix adjust.
Identities = 300/763 (39%), Positives = 430/763 (56%), Gaps = 88/763 (11%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+++ L+ N+ +AI RKG+ VPTPIQRK +PLIL D+V MARTGSGKTAAF++P
Sbjct: 80 KGGGFQAMGLNNNLLKAITRKGFSVPTPIQRKAIPLILDRKDLVGMARTGSGKTAAFVIP 139
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M+++L H + G RALI+SP+R+LA+QTLK KE R TDL+ LLVGGDS+E QF +
Sbjct: 140 MIEKLRAHSARFGTRALIMSPSRELAIQTLKVVKEFSRGTDLKCVLLVGGDSLEEQFGYM 199
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
A NPDI+IATPGR +H E+ + L S++YVVFDEAD LF MGFA QL +IL L +R
Sbjct: 200 AANPDIVIATPGRFLHLKVEMS-LDLSSIKYVVFDEADRLFEMGFAAQLTEILHALPPSR 258
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
Q+LLFSATLP++L EFA+AGL+DP LVRLD + K+SPDL+ AFF ++ EK +LL+++
Sbjct: 259 QSLLFSATLPASLVEFARAGLQDPSLVRLDAEQKVSPDLESAFFAVKGAEKEGSLLHILH 318
Query: 261 EHIS-------------------------------SDQQTLIFVSTKHHVEFLNVLFREE 289
+ I ++ T+IF +TKHHVE+L L
Sbjct: 319 DVIKMPVGSPEGVNNDSEKGSKKRKRGADGGSGKPTEHSTIIFTATKHHVEYLANLLIYA 378
Query: 290 GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKI 349
G S YG +DQ AR+I V FR KT L+VTDVAARGIDIP+L NVIN+DFPP+PK+
Sbjct: 379 GFAVSYVYGSLDQTARRIQVEDFRMGKTNILVVTDVAARGIDIPVLANVINFDFPPQPKV 438
Query: 350 FVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKI 409
FVHRVGR ARAG+ G ++S V D YL+DL LFL K + + D V+ +
Sbjct: 439 FVHRVGRTARAGQRGWSYSLVRDTDAPYLIDLQLFLGKKLVVGQETKNPSFSEDVVVGAL 498
Query: 410 DQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKE 469
+ G + + + S D+N+L+ A +LY +T+ + +
Sbjct: 499 KRDPVEGHVEW--------------FNKSLHESEDINALRGVAVKAEKLYLRTRNSAASQ 544
Query: 470 SIRRGKDL-PREG---LHPMFKNVLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKH 525
S +R K+L +G LHP+F ++G E + R+ FRP++TI E G +
Sbjct: 545 SAKRSKELVGSQGWTQLHPLFGEDVDGAEQARVDMLARISGFRPQETIFEIGGRRDKG-- 602
Query: 526 LQGPSSQWVDVMK--KKRAVHEKIINL--------------VHQQRSSKSMEKEV----- 564
+++ +VMK +KR + I + + S E+EV
Sbjct: 603 ----TTEAAEVMKQLRKRITPRRQIEAKADDDFEGIDDDIPTAAETGAGSDEEEVVADEM 658
Query: 565 EPEADSLMAKEIKETHGSKRKAKT-FKDEEYFISSVPT--NHHMEAGLSVRSDQGFGLNR 621
+ + +S E+ T+ + +K +T ++D E F+S P N E G V S N
Sbjct: 659 DVDEESNDGLEVTVTNTNSKKGRTDWRDSEVFMSYTPRTFNAAEERGYGVSSGGQDPSNF 718
Query: 622 LEAA---VLDLVADDSGGL--QKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAK 676
+EAA +DL D++ + + WDK+ +KY+ N E S K+++ ESG K
Sbjct: 719 VEAARGVTMDLTNDENAKSFGEPTRSKMRWDKKSRKYVSRENDEDGSKGAKMIRGESGVK 778
Query: 677 VKAT-KTGIYKKWK--ERSHKKVYLKGASNEGNAEETTSVPGG 716
+ A+ ++G + KWK R K ++ G+A ++P G
Sbjct: 779 IAASFQSGRFDKWKRANRLGKLPHVGEQVRPGSASHAANLPSG 821
>gi|310795114|gb|EFQ30575.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
Length = 903
Score = 497 bits (1279), Expect = e-137, Method: Compositional matrix adjust.
Identities = 311/807 (38%), Positives = 445/807 (55%), Gaps = 110/807 (13%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+++ L+ N+ RAI +KG+ VPTPIQRKT+PLI+ DVV MARTGSGKTAAF++PM++R
Sbjct: 90 FQAMGLNANLLRAITKKGFSVPTPIQRKTIPLIMDRKDVVGMARTGSGKTAAFVIPMIER 149
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L H + G RALI+SP+R+LALQTLK KE + TDL+ LLVGGDSME QF +A NP
Sbjct: 150 LRAHSAKVGTRALIMSPSRELALQTLKVVKEFSKGTDLKCILLVGGDSMEDQFSMMASNP 209
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
DI+IATPGR +H E+ + L S++YVVFDEAD LF MGFA QL +IL L +RQ+LL
Sbjct: 210 DIVIATPGRFLHLKVEM-GLDLSSIKYVVFDEADRLFEMGFAAQLTEILHALPPSRQSLL 268
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSATLP++L EFA+AGL+DP LVRLD +TK+SPDL+ AFF+++ EK AALL+++ + I
Sbjct: 269 FSATLPASLVEFARAGLQDPTLVRLDAETKVSPDLESAFFSVKGAEKEAALLHILSDLIK 328
Query: 265 -----------------------------SDQQTLIFVSTKHHVEFLNVLFREEGLEPSV 295
++ T+IF +TKHHVE+L L + G S
Sbjct: 329 MPHGTPDGVPLDVVPSKKRKREGEGRGKPTEHSTIIFAATKHHVEYLAQLLTKAGYAVSY 388
Query: 296 CYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVG 355
YG +DQ+AR+I+ FR + L+VTDVAARGIDIP+L NVIN+DFPP+PK+FVHRVG
Sbjct: 389 VYGSLDQEARRINTENFRNGRANILVVTDVAARGIDIPVLANVINYDFPPQPKVFVHRVG 448
Query: 356 RAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIAN 415
R ARAG+ G A+S V D YLLDL LFL + + E D
Sbjct: 449 RTARAGQRGWAYSIVRELDTPYLLDLQLFLGRRLVVGHETESPSYAED------------ 496
Query: 416 GETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK 475
+ G + I++ + + +++ D+ ++++ A +LY KT+ S +S +R +
Sbjct: 497 --VVVGGLRRDKIEIHMEWMEKVLKEEVDIEAMRKVSAKAEKLYLKTRHSASSQSAKRAR 554
Query: 476 DL----PREGLHPMFKNVLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSS 531
+L LHP+F + E ++ FRP +TI E K +G SS
Sbjct: 555 ELVGTKGWHSLHPIFGADINNAEQARNEMMAKISGFRPAETIFEI------GKGGKGSSS 608
Query: 532 QWVDVMK--------------KKRAVHEKIINLVHQQRSSKSMEKEVEPEADSLMAKE-- 575
+ V+VMK KK E++ +L S + E E +A ++ A +
Sbjct: 609 EAVEVMKQLRKRITPHRGNKEKKVDSDEEMEDLDDAANDSDAGSDE-EAKAQAMEAYDSD 667
Query: 576 --------------IKETHGSKRKAKTFKDEEYFISSVP--TNHHMEAGLSVRSDQGFGL 619
+ T K+K ++++D E F+S P N E G V S
Sbjct: 668 DDVEDDDDDGFEVTVTNTGEKKKKPESWRDSEVFMSYTPRTINTAEERGYGVTSGAQMS- 726
Query: 620 NRLEAA---VLDLVADDSG---GLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTES 673
+ +EAA +DL DD+ G + + WDK+ KY+ N E S K V+ ES
Sbjct: 727 SFVEAARNVTMDLTNDDTAKGFGEPSRAKGMRWDKKQNKYVARQNDEDGSKGAKYVRGES 786
Query: 674 GAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNAEETTSVPGGRHLGGNNRKFRGGKNQ 732
G K+ A+ ++G + +W++ + GA + NA E + N K+ K++
Sbjct: 787 GVKIAASFQSGRFDRWRKANRLGRIQVGALEKPNAPELPA----------NHKY---KHK 833
Query: 733 QRSVPNAHVCSEIKDLDQVRKERQKKA 759
Q P + +D +VRK+R +A
Sbjct: 834 QERAPKQ--ADKFRDDYEVRKKRIAEA 858
>gi|313233521|emb|CBY09693.1| unnamed protein product [Oikopleura dioica]
Length = 800
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 302/732 (41%), Positives = 440/732 (60%), Gaps = 78/732 (10%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
+++ +K KSGGF+S+ LS VF+ I R+GYK+PTPIQRK +P I+ G DVVAMARTGSG
Sbjct: 27 QQQNRKGKKSGGFQSMGLSHGVFKGIFRRGYKIPTPIQRKCIPKIIDGKDVVAMARTGSG 86
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTAAFL+P+L+RL + Q G R +ILSPTR+LA+QT KFT +L ++ +L +S+++GGDS
Sbjct: 87 KTAAFLIPILERLKKR-EQRGPRVVILSPTRELAIQTAKFTNDLSKFCNLSVSVILGGDS 145
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
+++QF +L QNPDI+IATPGRL+H L E+ D L V+ VVFDEAD LF +GF EQL++I
Sbjct: 146 LDNQFTQLDQNPDIVIATPGRLLHLLVEM-DRRLNYVKMVVFDEADQLFDLGFTEQLNEI 204
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
LG+L E++QTLLFSATLP+ + EFAKAGLRDP L+RLDV+ ++ +L+L FF R E+K
Sbjct: 205 LGRLPESKQTLLFSATLPNKILEFAKAGLRDPELIRLDVERRLPENLQLTFFHARHEDKI 264
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
AALL+++ I +D++T+IFV+TKHHVE + + P Y MD ARK+ +SRF
Sbjct: 265 AALLHLLGNVIKADEKTVIFVATKHHVELVKLFLERYNYTPCYIYSSMDPFARKLMISRF 324
Query: 313 R------ARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTA 366
R + T LI TD+AARGIDIPLLD V+N+ F K K F+HRVGR ARAGR G A
Sbjct: 325 RHEDEDPDKTTNILITTDIAARGIDIPLLDAVVNFHFAAKAKTFIHRVGRVARAGRPGHA 384
Query: 367 FSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQT 426
+S V++E+M YLLDLH+FL + + ++ DG + GR+PQ+
Sbjct: 385 YSIVSNEEMPYLLDLHVFLGRSLGFCKDGDK---SWDGKI--------------GRYPQS 427
Query: 427 VIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK--DLPREGLHP 484
ID +D V I SAD+ S ++ N ++ + + K PS ES + K D+ +HP
Sbjct: 428 AIDDEADIVSTAIKESADIQSQIKSAENGYKGFRRHKEKPSSESCTKFKEIDMMTCAVHP 487
Query: 485 MFKNVLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVH 544
+F +V E ++ +++ +PKQTI E R K +G S+ R +
Sbjct: 488 IFGDV--AAERQSIL--DKIATLKPKQTIFE-----YRDKKCKGNISETAYAANVMRTLR 538
Query: 545 EKIINLVHQQRSSKSMEKEVEPEADSLMAKEIKETHGSKRKAKTFKDEEYFISSVPTNHH 604
EK + + ++ K +K++E ++L+A E K ++Y +P
Sbjct: 539 EKNAEQIEKFKAIK--QKKIE---NTLIAAE--------------KSDDY----IPYVRE 575
Query: 605 MEAGLSVRSDQGFGLNRLEAAVLDLVAD---DSGGLQKQKQVYHWDKRGKKYIKLNNGER 661
+A +DQ G+N ++ + + + + G QK K WD++ KK++ N E+
Sbjct: 576 SDA-----ADQHLGINSFQSEAAEAMLNKQLEPG--QKPKAGRVWDRKRKKFV-TNQVEQ 627
Query: 662 VSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNE-GNAEETTSVPGGRHL 719
K +KTESG +K + KTG Y ++ E+S + + +E N T R
Sbjct: 628 ----EKKIKTESGNWIKQSFKTGKYTEYLEKSKAGLLADDSGDEDANKNNTEQSRQNRQA 683
Query: 720 GGN--NRKFRGG 729
N +R+ RGG
Sbjct: 684 LTNLIHRRTRGG 695
>gi|302406797|ref|XP_003001234.1| ATP-dependent RNA helicase DBP10 [Verticillium albo-atrum VaMs.102]
gi|261359741|gb|EEY22169.1| ATP-dependent RNA helicase DBP10 [Verticillium albo-atrum VaMs.102]
Length = 902
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 294/749 (39%), Positives = 419/749 (55%), Gaps = 101/749 (13%)
Query: 17 KKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAA 76
K K GGF+ + L+ N+ RAI +KG+ PTPIQRKT+PLI+ DVV MARTGSGKTAA
Sbjct: 81 KVNKKGGGFQVMGLNSNLLRAITKKGFVQPTPIQRKTIPLIMDRKDVVGMARTGSGKTAA 140
Query: 77 FLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQ 136
F++PM++RL H + G RALI+SP+R+LA+QTL+ K+ + TDL+ +L+VGGDSM+ Q
Sbjct: 141 FVIPMIERLKTHSAKFGARALIMSPSRELAIQTLRVVKDFNKGTDLKAALVVGGDSMDEQ 200
Query: 137 FEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL 196
F L+ NPDIIIATPGR +H E+ ++L S++YVVFDEAD LF MGFA QL +IL L
Sbjct: 201 FSLLSANPDIIIATPGRFLHLKVEMS-LNLSSIQYVVFDEADRLFEMGFAAQLTEILHAL 259
Query: 197 SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALL 256
+RQ+LLFSATLP++L EFA+AGL+DP LVRLD++TK+SPDL+ AFF ++ EK A+LL
Sbjct: 260 PPSRQSLLFSATLPASLVEFARAGLQDPTLVRLDIETKVSPDLESAFFGVKGAEKEASLL 319
Query: 257 YMIREHIS--------------------------------SDQQTLIFVSTKHHVEFLNV 284
+++ + I ++ T+IF +TKHHVE+L
Sbjct: 320 HILHDIIKMPLGSPDGMPLDGKPNKKRKRGKDGSGGKGKPTEHSTIIFAATKHHVEYLAN 379
Query: 285 LFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFP 344
L R G S YG +DQ+AR+IH FR ++ L+VTDVAARGIDIP+L NVIN+DFP
Sbjct: 380 LLRVAGFAVSYVYGALDQEARRIHTENFRNGRSNILVVTDVAARGIDIPVLANVINYDFP 439
Query: 345 PKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDG 404
P+PK+FVHRVGR ARAG+ G A+S V D YLLDL LFL + + E
Sbjct: 440 PQPKVFVHRVGRTARAGQRGWAYSIVRELDAPYLLDLQLFLGRKMVVGRESESPSY---- 495
Query: 405 VMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKP 464
N E + G P+ I++ + + +++ D+ + +R A +LY KT+
Sbjct: 496 ----------NEEVVVGALPRNRIEVHMEWLAKVLGDHEDIEATRRVSVKAEKLYLKTRN 545
Query: 465 LPSKESIRRGKDL----PREGLHPMFKNVLEG-----GELMALAFSERLKAFRPKQTILE 515
S +S RR ++ LHP+F V + ELMA ++ +RP +TI E
Sbjct: 546 SASSQSARRARETVGSKAWSQLHPLFDEVKDDDAQARAELMA-----KVSGYRPHETIFE 600
Query: 516 AEGEAARSKHLQGPSSQWVDVMK--KKRAVHEKIINLVHQQRSSKSMEKEVEPEADSLM- 572
S+ + +S+ +VMK +KR + + S + ME + D
Sbjct: 601 I------SRGGKAGNSEAAEVMKELRKRITPRRGQAAEEEIDSDEDMEGFDDDNDDEAAV 654
Query: 573 ---AKEIKETHG--------------------SKRKAKTFKDEEYFISSVP----TNHHM 605
A E+ G K+ A +++D+E F+ P T
Sbjct: 655 GEGADEMDGISGIDMDDSDDDLEVTISNPDDKKKKAANSYRDDEIFMGYTPRTINTAEER 714
Query: 606 EAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQ---KQKQVYHWDKRGKKYIKLNNGERV 662
G+S + + + A ++L DD G Q + K WDK+ KY+ N E
Sbjct: 715 GYGISSGTQTSSFVEQAREAAMNLTNDDGGKAQFGDQAKSGMRWDKKQNKYVARANDEDG 774
Query: 663 SASGKVVKTESGAKVKAT-KTGIYKKWKE 690
S K ++ ESG K+ A+ ++G Y KW++
Sbjct: 775 SKGKKYIRGESGTKIAASFQSGRYDKWRK 803
>gi|46389757|dbj|BAD15109.1| hypothetical protein [Nicotiana tabacum]
Length = 274
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 237/273 (86%), Positives = 256/273 (93%)
Query: 54 MPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFT 113
MPLILSG DVVAMARTGSGKTAAFL+PML++L QHVPQ GVRALILSPTRDLALQTLKFT
Sbjct: 1 MPLILSGIDVVAMARTGSGKTAAFLLPMLEKLKQHVPQAGVRALILSPTRDLALQTLKFT 60
Query: 114 KELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVV 173
KELGR+TD+R+SLLVGGDS SQFEELAQ+PDIIIATP RLMHHLSEV+DMS ++VEYVV
Sbjct: 61 KELGRFTDIRVSLLVGGDSKGSQFEELAQSPDIIIATPRRLMHHLSEVDDMSRRTVEYVV 120
Query: 174 FDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDT 233
FDEADCLF MGFAEQLH+IL L ENRQTLLFSATLPSALAEFAKAGLRDP LVRLD+DT
Sbjct: 121 FDEADCLFSMGFAEQLHRILTHLGENRQTLLFSATLPSALAEFAKAGLRDPQLVRLDLDT 180
Query: 234 KISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEP 293
KISPDLKLAFFT+R EEKHAALLY+IRE ISSDQQTL+FVSTK+HVEFLN+L REEG+EP
Sbjct: 181 KISPDLKLAFFTVRHEEKHAALLYLIREQISSDQQTLVFVSTKYHVEFLNILLREEGIEP 240
Query: 294 SVCYGDMDQDARKIHVSRFRARKTMFLIVTDVA 326
SVCYGDMD DARKIH+SRFRARKTM LIVTDVA
Sbjct: 241 SVCYGDMDHDARKIHISRFRARKTMVLIVTDVA 273
>gi|346977175|gb|EGY20627.1| ATP-dependent RNA helicase DBP10 [Verticillium dahliae VdLs.17]
Length = 899
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 292/746 (39%), Positives = 421/746 (56%), Gaps = 98/746 (13%)
Query: 17 KKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAA 76
K K GGF+ + L+ N+ RAI +KG+ PTPIQRKT+PLI+ DVV MARTGSGKTAA
Sbjct: 81 KVNKKGGGFQVMGLNSNLLRAITKKGFVQPTPIQRKTIPLIMDRKDVVGMARTGSGKTAA 140
Query: 77 FLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQ 136
F++PM++RL H + G RALI+SP+R+LA+QTL+ K+ + TDL+ +L+VGGDSM+ Q
Sbjct: 141 FVIPMIERLKTHSAKFGARALIMSPSRELAIQTLRVVKDFNKGTDLKAALVVGGDSMDEQ 200
Query: 137 FEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL 196
F L+ NPDIIIATPGR +H E+ ++L S++YVVFDEAD LF MGFA QL +IL L
Sbjct: 201 FSLLSANPDIIIATPGRFLHLKVEMS-LNLSSIQYVVFDEADRLFEMGFAAQLTEILHAL 259
Query: 197 SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALL 256
+RQ+LLFSATLP++L EFA+AGL+DP LVRLD++TK+SPDL+ AFF ++ EK A+LL
Sbjct: 260 PPSRQSLLFSATLPASLVEFARAGLQDPTLVRLDIETKVSPDLESAFFGVKGAEKEASLL 319
Query: 257 YMIREHIS--------------------------------SDQQTLIFVSTKHHVEFLNV 284
+++ + I ++ T+IF +TKHHVE+L
Sbjct: 320 HILHDIIKMPLGSPDGMPLDGKPNKKRKRGKDGSGGKGKPTEHSTIIFAATKHHVEYLAN 379
Query: 285 LFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFP 344
L R G S YG +DQ+AR+IH FR ++ L+VTDVAARGIDIP+L NVIN+DFP
Sbjct: 380 LLRVAGFAVSYVYGALDQEARRIHTENFRNGRSNILVVTDVAARGIDIPVLANVINYDFP 439
Query: 345 PKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDG 404
P+PK+FVHRVGR ARAG+ G A+S V D YLLDL LFL + + E
Sbjct: 440 PQPKVFVHRVGRTARAGQRGWAYSIVRELDAPYLLDLQLFLGRKMVVGRESESPSY---- 495
Query: 405 VMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKP 464
N E + G P+ I++ + + +++ D+ + +R A +LY KT+
Sbjct: 496 ----------NEEVVVGALPRNRIEVHMEWLAKVLGDHEDIEATRRVSVKAEKLYLKTRN 545
Query: 465 LPSKESIRRGKDL----PREGLHPMFKNVLEG-----GELMALAFSERLKAFRPKQTILE 515
S +S RR ++ LHP+F V + ELMA ++ +RP +TI E
Sbjct: 546 SASSQSARRARETVGSKAWSQLHPLFDEVKDDDAQARAELMA-----KVSGYRPHETIFE 600
Query: 516 AEGEAARSKHLQGPSSQWVDVMKKKR---------AVHEKIINLVHQQ------------ 554
S+ + +S+ +VMK+ R A E+I + +
Sbjct: 601 I------SRGGKAGNSEAAEVMKELRKRITPRRGQAAEEEIDSDEDMEDFDDDDDDEAAI 654
Query: 555 -RSSKSMEKEVEPEADSLMAKEIKETHGSKRK-AKTFKDEEYFISSVP----TNHHMEAG 608
+ M+ ++D + + K+K A +++D+E F+ P T G
Sbjct: 655 GEGADEMDGIDVDDSDDDLEVTVSNPDDKKKKAANSYRDDEIFMGYTPRTINTAEERGYG 714
Query: 609 LSVRSDQGFGLNRLEAAVLDLVADDSGGLQ---KQKQVYHWDKRGKKYIKLNNGERVSAS 665
+S + + + A ++L DD G Q + K WDK+ KY+ N E S
Sbjct: 715 ISSGTQTSSFVEQAREAAMNLTNDDGGKAQFGDQAKSGMRWDKKQNKYVARANDEDGSKG 774
Query: 666 GKVVKTESGAKVKAT-KTGIYKKWKE 690
K ++ ESG K+ A+ ++G Y KW++
Sbjct: 775 KKYIRGESGTKIAASFQSGRYDKWRK 800
>gi|405968650|gb|EKC33699.1| ATP-dependent RNA helicase DDX54 [Crassostrea gigas]
Length = 472
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 248/437 (56%), Positives = 324/437 (74%), Gaps = 16/437 (3%)
Query: 14 EKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGK 73
E+ +KK KSGGF+S+ LS V++ + RKGYK+PTPIQRKT+PLI+ G DVVAMARTGSGK
Sbjct: 37 EQNRKKKKSGGFQSMGLSHGVYKGVLRKGYKIPTPIQRKTVPLIMEGKDVVAMARTGSGK 96
Query: 74 TAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSM 133
TAAFL+PM ++L H + G R LILSPTR+LALQTLKFTKELG+YT LR ++++GGD M
Sbjct: 97 TAAFLIPMFEKLKTHTAKSGARGLILSPTRELALQTLKFTKELGKYTGLRAAVVLGGDKM 156
Query: 134 ESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKIL 193
+ QF L +NPDIIIATPGRLMH L E+E LKSVEYVVFDEAD LF MGF EQLH+I+
Sbjct: 157 DDQFAALHENPDIIIATPGRLMHVLVEMEK-KLKSVEYVVFDEADRLFEMGFQEQLHEII 215
Query: 194 GQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHA 253
+L E+RQT+LFSATLP L EFAKAGL DP L+RLDV+TK+S LK +FF R+E+K A
Sbjct: 216 HRLPESRQTVLFSATLPKLLVEFAKAGLHDPTLLRLDVETKLSEQLKQSFFRCREEDKPA 275
Query: 254 ALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFR 313
LLY+++ I DQ T++F +TKHHVE+L+++ G++ + Y +D ARKI+V++F+
Sbjct: 276 ILLYILKHVIDLDQLTVVFAATKHHVEYLHMILTYAGIDSTYIYSSLDPSARKINVAKFQ 335
Query: 314 ARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSE 373
+K LIVTD+AARGIDIPLLDNVIN +FP K K+FVHRVGR ARAGR G A+S V +
Sbjct: 336 HKKVKVLIVTDLAARGIDIPLLDNVINVNFPAKSKLFVHRVGRVARAGREGYAYSLVAQD 395
Query: 374 DMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSD 433
++ +LLDL++FL + + A S+ + + D DGV+ G PQTV+D +
Sbjct: 396 EVPFLLDLYIFLGRSLTIA-SQLKNVEDKDGVL--------------GDVPQTVVDEEEE 440
Query: 434 RVREIIDSSADLNSLQR 450
++R DL+++ R
Sbjct: 441 QLRLWHKDHIDLSAISR 457
>gi|212539832|ref|XP_002150071.1| ATP dependent RNA helicase (Dbp10), putative [Talaromyces marneffei
ATCC 18224]
gi|210067370|gb|EEA21462.1| ATP dependent RNA helicase (Dbp10), putative [Talaromyces marneffei
ATCC 18224]
Length = 948
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 293/753 (38%), Positives = 411/753 (54%), Gaps = 101/753 (13%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+++ L+ + +AI RKG+ VPTPIQRKT+P+I+ DVV MARTGSGKTAAF++P
Sbjct: 94 KGGGFQAMGLNAQLLKAIARKGFSVPTPIQRKTIPVIMDDQDVVGMARTGSGKTAAFVIP 153
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M+++L H + GVR LI+SP+R+LALQTLK KELGR TDL+ LLVGGDS+E QF +
Sbjct: 154 MIEKLKSHSGKVGVRGLIMSPSRELALQTLKVVKELGRGTDLKAVLLVGGDSLEEQFGLM 213
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
NPDI+IATPGR +H E+ ++ L S++YVVFDEAD LF MGFA QL +IL L R
Sbjct: 214 VGNPDIVIATPGRFLHLKVEM-NLDLSSIKYVVFDEADRLFEMGFAAQLTEILHGLPATR 272
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSATLP +L EFA+AGL+DP L+RLD + KISPDL+ AFFT++ +K ALL+++
Sbjct: 273 QTLLFSATLPKSLVEFARAGLQDPTLIRLDTEGKISPDLQNAFFTVKTADKEGALLHILH 332
Query: 261 EHIS-------------------------------------------SDQQTLIFVSTKH 277
+ I + T+IF +TKH
Sbjct: 333 DVIKIPTGPTGVYFRSNEDDEEEEDGRRPRKRKRFDSNKAGKHTESPTKHSTIIFAATKH 392
Query: 278 HVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDN 337
HV+++ + RE G S YG +DQ AR I V RFRA T L+VTDVAARGIDIP+L N
Sbjct: 393 HVDYIASMLREAGFAVSYAYGSLDQTARNIQVQRFRAGATHILVVTDVAARGIDIPILAN 452
Query: 338 VINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLS-KPIRAAPSEE 396
VIN+DFP +PK+FVHRVGR ARAG+ G ++S V D YLLDL LFL K + P E
Sbjct: 453 VINYDFPSQPKVFVHRVGRTARAGQKGWSYSLVRDADAPYLLDLQLFLGRKLVLGRPETE 512
Query: 397 EVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAF 456
+ E + G FP+ + + V + +D+++DL + +
Sbjct: 513 PNFAE---------------EVVIGGFPRDTLSGHCEWVTKTLDNNSDLQAQRGVANRGE 557
Query: 457 RLYSKTKPLPSKESIRRGKDLPREG----LHPMFKNVLEGGELMALAFSERLKAFRPKQT 512
+LY +T+ S ES +R K++ +H +F E+ RL +RP++T
Sbjct: 558 KLYMRTRNAASLESAKRAKEVVTSDKWTTVHALFTEENNQMEVEREKMLARLGGYRPQET 617
Query: 513 ILEAEGEAA--------------------RSKHLQGPSSQWVDVMKKKRAVHEKIINLVH 552
I E G + K P+++ VD ++ E
Sbjct: 618 IFEIGGRRGGKKGTDETFETIKRVRSALDKKKKPSAPTTETVDANADEKDDVEMDNGFSD 677
Query: 553 QQRSSK-------SMEKEVEPE---ADSLMAKEIKETHGSKRKAKTFKDEEYFISSVPTN 602
+ + SM E + E + + + K GS A TF++ +YF++ P +
Sbjct: 678 EDDETPKDNLDNMSMASESDLEVTFSQYSQSNKNKSKKGSGADATTFQNPDYFMAYTPAD 737
Query: 603 HHM----EAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNN 658
+ G+ S F L + A +DL AD+ G + + WDKR KKY+ N
Sbjct: 738 ASLVEDRAYGVHSGSSSNFALASRD-ATMDLTADEKAGFGEAQSSMRWDKRHKKYVSRRN 796
Query: 659 GERVSASGK-VVKTESGAKVKAT-KTGIYKKWK 689
E S G +++ ESG K+ A+ ++G + WK
Sbjct: 797 DEDGSRGGSALIRGESGTKIAASFRSGRFDAWK 829
>gi|398392503|ref|XP_003849711.1| hypothetical protein MYCGRDRAFT_75563 [Zymoseptoria tritici IPO323]
gi|339469588|gb|EGP84687.1| hypothetical protein MYCGRDRAFT_75563 [Zymoseptoria tritici IPO323]
Length = 833
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 301/756 (39%), Positives = 420/756 (55%), Gaps = 126/756 (16%)
Query: 28 LNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQ 87
+ L+ ++ +AI RKG+ VPTPIQRKT+PLIL G DVV MARTGSGKTAAF++PM+++L
Sbjct: 1 MGLNTHLLKAITRKGFSVPTPIQRKTIPLILDGQDVVGMARTGSGKTAAFVIPMIEKLKS 60
Query: 88 HVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDII 147
H + G RA++LSP+R+LALQTLK KE+ R TDLR +LLVGGDS+E QF +A NPDII
Sbjct: 61 HSAKVGARAIVLSPSRELALQTLKVVKEMSRGTDLRTTLLVGGDSLEEQFSSMASNPDII 120
Query: 148 IATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSA 207
IATPGR H E+ + L SV+YVVFDEAD LF MGFA QL +I+ L NRQTLLFSA
Sbjct: 121 IATPGRFEHLKVEMS-LELSSVKYVVFDEADRLFEMGFAAQLLEIMHSLPSNRQTLLFSA 179
Query: 208 TLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS--- 264
TLP +L EFA+AGL+DP LVRLD ++KI+P L+ AFFT+++ EK ALL ++++ I
Sbjct: 180 TLPKSLVEFARAGLQDPKLVRLDAESKIAPGLQSAFFTVKRAEKEGALLNILQDIIKMPT 239
Query: 265 ---------------------------------SDQQTLIFVSTKHHVEFLNVLFREEGL 291
S+ T+IF +TKHHV++L + G
Sbjct: 240 GETVASKKAKEPKQRDNKKRKRGADGVPAGEMPSEHSTVIFAATKHHVDYLANFLKAYGY 299
Query: 292 EPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFV 351
S YG +DQ ARK+ V FR T L+VTDVAARG+DIP+L NVIN+DFP +PKIFV
Sbjct: 300 ATSYVYGSLDQTARKMQVLDFRTGMTNILVVTDVAARGLDIPILANVINYDFPSQPKIFV 359
Query: 352 HRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQ 411
HRVGR ARAG+ G ++S VT +DM YLLDL LFLS+ + E+E G+ S
Sbjct: 360 HRVGRTARAGKEGWSYSLVTGQDMPYLLDLQLFLSRKLIVGKVEKE-----PGMFS---- 410
Query: 412 AIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESI 471
+ G P+ ++ + ++++ DL +++ + Y +T+ S ES+
Sbjct: 411 ----NNIVVGAMPRDKMERYCEEALKLLEEDDDLTAMREVAGKGEKQYLRTRNSASAESV 466
Query: 472 RRGKDLPREGLH---PMFKNVL-EGG-----ELMALAFSERLKAFRPKQTILE------- 515
+R K + LH NVL + G E L R+ FRP +T+ E
Sbjct: 467 KRTKSI----LHTEDSAATNVLFDDGQDASLEQQRLDMLARVSGFRPNETVFEFGQRGKL 522
Query: 516 ---AEGEAARSKHLQGPSSQWVDVMKKKRAVH----------------EKIINLVHQQRS 556
AE R +Q P Q D + A + E I+ +
Sbjct: 523 NEAAEMMKNRRAKVQ-PKRQQADPDELDEAANASRNPDVEDAFSDSEEELILTQPNADDM 581
Query: 557 SKSMEKEVE-----PEADSLMAKEIKETHGSKRKAKTFKDEEYFISSVPTNHHMEAGLSV 611
+++ + E+E P ++LM G KRK ++D E+F+S P+ L++
Sbjct: 582 AEASDSEIEKTFTTPSEEALMG-------GKKRKKANWQDNEHFMSYTPST------LNL 628
Query: 612 RSDQGFGLNR------------LEA---AVLDLVADDSGGLQKQKQV--YHWDKRGKKYI 654
D+G+G++ LEA A +DL D+S Q + WDK+ KKY+
Sbjct: 629 AEDRGYGVHSGGTNATTGNPHFLEAARGATMDLTNDESKSFQDATKAKGLRWDKKSKKYV 688
Query: 655 KLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWK 689
N E S K+++ ESG K+ A+ K+G + W+
Sbjct: 689 ARANDEDGSKGAKMIRGESGQKIAASFKSGRFDAWR 724
>gi|225680138|gb|EEH18422.1| ATP-dependent RNA helicase dbp10 [Paracoccidioides brasiliensis
Pb03]
Length = 934
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 320/881 (36%), Positives = 456/881 (51%), Gaps = 156/881 (17%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+S+ L+ + +AI RKG+ VPTPIQRKT+PL+L DVV MARTGSGKTAAF++P
Sbjct: 80 KGGGFQSMGLNATLLKAIARKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVIP 139
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M+++L H + G RALI+SP+R+LALQTLK KELGR TDL+ LLVGGDS+E QFE +
Sbjct: 140 MIEKLKSHSAKFGARALIMSPSRELALQTLKVVKELGRGTDLKCVLLVGGDSLEEQFEYM 199
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
+ NPDIIIATPGR +H E+ + L S+ YVVFDEAD LF MGF+ QL +IL L +R
Sbjct: 200 SGNPDIIIATPGRFLHLKVEMS-LDLSSIRYVVFDEADRLFEMGFSAQLTEILHGLPSSR 258
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSATLP +L EFA+AGL++P L+RLD ++KISPDL+ FF+++ EK ALL+++
Sbjct: 259 QTLLFSATLPKSLVEFARAGLQEPTLIRLDAESKISPDLQNGFFSIKSSEKEGALLHLLH 318
Query: 261 EHIS------------------------------------SDQQTLIFVSTKHHVEFLNV 284
+ I ++ T+IF +TKHHV++L
Sbjct: 319 DIIKIPTGETEAGKRTKEELHNPKKRKRSDTVLKSHKESPTEHSTIIFTATKHHVDYLTS 378
Query: 285 LFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFP 344
+ R+ G S YG +DQ ARKI V FR+ T L+VTDVAARGIDIP+L NVIN+DFP
Sbjct: 379 VLRQSGFAVSYAYGSLDQTARKIEVQNFRSGITHILVVTDVAARGIDIPILSNVINYDFP 438
Query: 345 PKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDG 404
+ KIFVHRVGR ARAGRTG ++S + D YLLDL LFL +P+
Sbjct: 439 SQSKIFVHRVGRTARAGRTGWSYSLIRESDAPYLLDLQLFLGRPL--------------- 483
Query: 405 VMSK-IDQAIANGE-TIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKT 462
++ + + Q + E + G + + + V +++D D+ + +LY +T
Sbjct: 484 ILGRALGQPVNYAEDVVVGSLQRDQVSRYCEWVSKLLDEDVDVALQREVAMKGEKLYMRT 543
Query: 463 KPLPSKESIRRGKDLPREG----LHPMFKNVLEGGELMALAFSERLKAFRPKQTILEAEG 518
+ S ES +R K+L +HP+F + E RL ++P++TI E G
Sbjct: 544 RNSASSESAKRAKELVGSDEWMMVHPLFNDESSRIEEEREKMLARLGGYKPQETIFEIGG 603
Query: 519 EAARSKHLQGPSSQWVDVMKKKRAVHE----------KIINLVH-------QQRSSKSME 561
+ + +++M+K R E K+ NL QQ +
Sbjct: 604 RRGGKNG----NDEAIEMMRKMRLTFESKRARKETGQKVSNLTDESGVVDCQQNDDNEGD 659
Query: 562 KEVEPEAD---------SLMA-KEIKETHGSKRK--------------AKTFKDEEYFIS 597
+ + + D SL + E++ T + +F++ EYF+S
Sbjct: 660 ELADFDGDDDNVGNADMSLASDSELEVTFSYPQSSKSKSKKAANNPTLGDSFQNPEYFMS 719
Query: 598 SVPTNHHMEAGLSVRSDQGFGLNRLEA---AVLDLVADDSG--GLQKQKQVYHWDKRGKK 652
P ++ + + G N +EA A +DL D+S G + + + WDKR KK
Sbjct: 720 YTPASNSLVEDRAYGVHSGSNTNFVEASRGATMDLAGDESASRGFGEPRSIMRWDKRQKK 779
Query: 653 YIKLNNGERVSASGK---VVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNAE 708
Y+ N E S GK +V+ ESG K+ A+ ++G + WK K + G AE
Sbjct: 780 YVSRRNDEDGSKGGKRDLLVRGESGTKIAASFRSGRFDAWK----KGKRIGHMPRVGEAE 835
Query: 709 ETTSVPGGRHLGGNNRKFRGGKNQQRSVPN------------------------------ 738
PG +K+R K+Q P+
Sbjct: 836 ----APGFGSGAPGEKKYRHRKDQAPKAPDKFRDDYEKKKKKVKAAKQREMEKAFDPSSN 891
Query: 739 ------AHVCSEIKDLDQVRKERQKKADRIAFMKGKTQKGK 773
H SE+K+++ VRK R+ K R T+KGK
Sbjct: 892 AKGSGKVHGKSELKNVEDVRKARKLKEKRREKNARPTKKGK 932
>gi|171690518|ref|XP_001910184.1| hypothetical protein [Podospora anserina S mat+]
gi|170945207|emb|CAP71318.1| unnamed protein product [Podospora anserina S mat+]
Length = 924
Score = 494 bits (1271), Expect = e-136, Method: Compositional matrix adjust.
Identities = 317/833 (38%), Positives = 461/833 (55%), Gaps = 105/833 (12%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+++ L+ N+ RAI +KG+ VPTPIQRKT+PL+L DVV MARTGSGKTAAF++P
Sbjct: 86 KGGGFQAMGLNANLLRAITKKGFSVPTPIQRKTIPLVLERRDVVGMARTGSGKTAAFVIP 145
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M++RL H P+ G RALILSP+R+LALQTLK KELGR TDL+ LLVGGDS+E QF ++
Sbjct: 146 MIERLKGHSPKVGARALILSPSRELALQTLKVVKELGRGTDLKTILLVGGDSLEEQFAQM 205
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
A NPDI+IATPGR +H E+ +++L S++YVVFDEAD LF MGFAEQL +IL L +R
Sbjct: 206 ATNPDIVIATPGRFLHLKVEM-NLNLSSIKYVVFDEADRLFEMGFAEQLTEILHALPSSR 264
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSATLPS+L EFA+AGL++P LVRLD +TK+SPD++ AFF+++ EK ALL+++
Sbjct: 265 QTLLFSATLPSSLVEFARAGLQEPSLVRLDAETKVSPDMESAFFSVKGGEKEGALLHILH 324
Query: 261 EHI--------------------------SSDQ----------QTLIFVSTKHHVEFLNV 284
+ I SD+ T+IF +TKHHVE++
Sbjct: 325 DIIKMPMGTPEGAPKDEADPNNSRGKRKRGSDRLSFKEKPTAHSTIIFTATKHHVEYIAH 384
Query: 285 LFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFP 344
L R G S YG +DQ ARKI V FR +T L+VTDVAARGIDIP+L NVIN+DFP
Sbjct: 385 LLRHAGFAVSYIYGSLDQTARKIQVDDFRRGRTNILVVTDVAARGIDIPVLANVINYDFP 444
Query: 345 PKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDG 404
P+PK+FVHRVGR ARAG+ G A++ V D+ YL+DL LFL + +++ DG
Sbjct: 445 PQPKVFVHRVGRTARAGQRGWAYALVRESDLPYLIDLQLFLGR---------RLVMGKDG 495
Query: 405 VMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKP 464
Q + + G ++ ++ ++ V ++++ D+++L+ A +LY +T+
Sbjct: 496 QDPSFAQ-----DVVLGALKRSELENQTEWVNKVLNEEGDISALRGVTLKAEKLYMRTRN 550
Query: 465 LPSKESIRRGKDLPREG----LHPMFKNVLEGGELMALAFSERLKAFRPKQTILE--AEG 518
S S +R +++ LHP+F E ++ F+P++T+ E +G
Sbjct: 551 SASSSSAKRAREIINSKGWTQLHPLFGVEAINAEEARDNLLSKISLFKPQETVFEIGPQG 610
Query: 519 EAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKSMEKEVEPEADSLMAK--EI 576
++ R+K + S V ++ E ++ E + ++D AK ++
Sbjct: 611 KSHRNKAAEVMRSFRTKVAPRRITKGETDSDVDMSDGEGPKAGSEFDSDSDDEPAKQEDV 670
Query: 577 KETHGSKRKAK-----------------------TFKDEEYFISSVP--TNHHMEAGLSV 611
E+ + + +F+D E F+S P T+ E V
Sbjct: 671 SESEQEEDDSDSEMEVTVTSSKSSKKQKGGDPIASFQDPEIFMSYTPRTTSAAEEKAYGV 730
Query: 612 RS---DQGFGLNRLEAAVLDLVADDSG---GLQKQKQVYHWDKRGKKYIKLNNGERVSAS 665
S + + A +DL DD GL + ++ WDKR KY+ N + S
Sbjct: 731 HSGGVNSSHFVTAARDAAMDLTNDDGAKAFGLPTRSKL-RWDKRHSKYVARANDDDGSKG 789
Query: 666 GKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNAEETTSVPGGRHLGGNNR 724
K+++ ESG K+ A+ ++G + KWK +S++ L G G E+ PG L
Sbjct: 790 VKMIRGESGVKIAASFQSGRFDKWK-KSNRIGRLPGI---GELEK----PGLARLANGPG 841
Query: 725 KFRGG---KNQQRSVPNAHVCSEIKDLDQVRKERQKKADRIAFMKGKTQKGKK 774
GG K++Q P + +D VRK+R +A K K +G K
Sbjct: 842 HQEGGTRYKHKQEKAPKE--ADKFRDDYHVRKKRVAEAKEKRIGKFKDGEGSK 892
>gi|268553635|ref|XP_002634804.1| Hypothetical protein CBG13909 [Caenorhabditis briggsae]
Length = 845
Score = 494 bits (1271), Expect = e-136, Method: Compositional matrix adjust.
Identities = 307/838 (36%), Positives = 460/838 (54%), Gaps = 124/838 (14%)
Query: 12 RREKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGS 71
++ + +K K+GG++ L L +F+AI++KG+ PTPIQRKT+P I+ G DVVAM+RTGS
Sbjct: 13 QQSQNRKHKKAGGWQQLGLDHTIFKAIEKKGFNQPTPIQRKTIPCIMDGKDVVAMSRTGS 72
Query: 72 GKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGD 131
GKTAAF++PMLQ+L +G +RAL++SPTR+LALQT K KELGR+T LR + LVGGD
Sbjct: 73 GKTAAFVIPMLQKLKGRDTKG-IRALMVSPTRELALQTFKVVKELGRFTGLRCACLVGGD 131
Query: 132 SMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHK 191
+E QF + +NPDI++ATPGRL+H + E+ D+ L+ V+YVVFDEAD LF MGF +QL +
Sbjct: 132 VLEDQFSTIHENPDILLATPGRLLHVIVEM-DLRLQFVQYVVFDEADRLFEMGFQDQLTE 190
Query: 192 ILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEK 251
L ++ E+RQTLLFSATLP L +FAKAGL DP LVRLDVD K+S L + F R +EK
Sbjct: 191 TLKRIPESRQTLLFSATLPKMLVDFAKAGLTDPMLVRLDVDEKVSDKLSMVFCMCRPDEK 250
Query: 252 HAAL--------------------------LYMIREHISSDQQTLIFVSTKHHVEFLNVL 285
A L + R ++QT++F +T HVE++ +
Sbjct: 251 LALLHLCRIFEILKIFQKFWKFGNFEKSEFRFFSRRMDRENKQTVVFCATMKHVEYVVGI 310
Query: 286 FREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPP 345
G++ S Y +D ARK ++ +F ++ L+VTDVAARG+DIPLLD VIN FP
Sbjct: 311 LHRAGIDCSFVYSQLDATARKQNIQKFHEKQNNILVVTDVAARGVDIPLLDTVINLHFPS 370
Query: 346 KPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGV 405
K K++VHRVGR ARAGR+GTA S + ++++ YL DL +FL KPI+ A DG
Sbjct: 371 KAKLYVHRVGRVARAGRSGTAISLIANDELPYLTDLFMFLGKPIKFA---------TDGS 421
Query: 406 MSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPL 465
K D ET+ GR P +++ L ++ I D++ ++ L++ TNA Y++T+
Sbjct: 422 EYKED------ETLIGRVPDSIVSLETEFFNSIHDNNEEMIDLRQKATNAMMKYTRTRQP 475
Query: 466 PSKESIRRGK-DLPREGL----HPMFKNVLEGGELMALAFSERLKAFRPKQTILEAEGEA 520
PS ES RR K D+ + + HP K G+ + R+ A++ + TI E
Sbjct: 476 PSAESARRVKQDIRTDSVECAPHPFLK---ADGDKQSNDILNRISAYKSRNTIFEMN--- 529
Query: 521 ARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKSME---KEVEPEADSL------ 571
+ SQ + VM+ KR HE I+ V +++ + E KE E ++ +
Sbjct: 530 ------KSQKSQALAVMQAKRKAHEPRISTVTEEKRKQKEERAQKEAEENSEKIDKINNG 583
Query: 572 --MAKEIKETH---------GSKRKAKT---------------------------FKDEE 593
+ + ET G+ + +T F+ E+
Sbjct: 584 EKLEDVVDETELEAVFGTVIGATKHTETSEENPGKKKKKSGGGQGKKIDRQEQMRFEREK 643
Query: 594 YFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKY 653
+++ +H E L++ D+ + E A +D++ DD G+ QK WD+R KKY
Sbjct: 644 HYVPYTSADHVAERQLAL--DKVDFARQAEGASVDIIMDDDRGMYNQKHGQRWDRRLKKY 701
Query: 654 IKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNAEETTS 712
+ L+ E + K ++TE G + A+ KTG Y++WK++ G G ++T
Sbjct: 702 VGLSGNE---PANKKIRTEDGTWLPASYKTGKYEEWKQKQKIGFKKDGGEESGETQQTQD 758
Query: 713 VPGGRHLGGNNRKFRGGKNQQRSVPNAHVCSEIKDLDQVRKERQKKADRIAFMKGKTQ 770
G RK++ +S H SE+K+ DQ+ K R+K+ +M+ + Q
Sbjct: 759 Y-------GRKRKWKN--EAAKSAGPKH--SELKNKDQILKGRRKQEKLENYMEHRRQ 805
>gi|256074321|ref|XP_002573474.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
gi|353228911|emb|CCD75082.1| putative dead box ATP-dependent RNA helicase [Schistosoma mansoni]
Length = 829
Score = 493 bits (1270), Expect = e-136, Method: Compositional matrix adjust.
Identities = 297/717 (41%), Positives = 437/717 (60%), Gaps = 57/717 (7%)
Query: 17 KKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAA 76
+K K+GGF+S+ LS F I +KGYK+PTPIQRK +P+ILSG DVV+MARTGSGKTAA
Sbjct: 24 RKNRKAGGFQSMGLSVATFNGIIKKGYKIPTPIQRKAIPIILSGRDVVSMARTGSGKTAA 83
Query: 77 FLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQ 136
FL+P+ ++ H P G RALI+SPTR+LA+QTL FTKELG++T L+ ++++GGD ME Q
Sbjct: 84 FLIPLFEKFPCHSP-AGPRALIMSPTRELAIQTLNFTKELGKFTPLKATIILGGDKMEEQ 142
Query: 137 FEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL 196
F L ++PDIIIATPGR +H L E+ ++SLKS+EYVVFDE D LF +GFAEQL + L +L
Sbjct: 143 FAALHKSPDIIIATPGRFLHVLMEM-NLSLKSIEYVVFDEGDRLFELGFAEQLSETLKRL 201
Query: 197 SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALL 256
+RQTL+FSATLP L EFA+AGL DP L+RLD+ +K+S DLKLA T EEK+ L+
Sbjct: 202 PRSRQTLIFSATLPKNLVEFARAGLVDPILLRLDLHSKLSQDLKLAHITCLPEEKNVILV 261
Query: 257 YMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK 316
+++ + I D+Q ++F +TKHHVE +L + G + + +D AR + + +FR+R
Sbjct: 262 HLLGKVIHKDEQAVVFFATKHHVESFQMLLTDLGFGCTCIHSGLDPSARNLALKKFRSRT 321
Query: 317 TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMA 376
L+VTDVAARG+DIP LDNVIN+ FP +PK+F+HRVGR ARAGR G A+S V E++
Sbjct: 322 ARVLLVTDVAARGVDIPHLDNVINFHFPAQPKLFLHRVGRVARAGRRGVAYSLVDPEELP 381
Query: 377 YLLDLHLFLSKPIRAA-PSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRV 435
YLLD+ +FL K + S ++V + D V GR P++++ ++ R+
Sbjct: 382 YLLDVFMFLGKEWKVCQSSNKQVEWESDCV---------------GRAPRSIMSSLAARI 426
Query: 436 REIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREG-----LHPMFKNVL 490
I ++ L S+++ C NA + Y +T+P S ESIRR KDL R+ +H +F N
Sbjct: 427 ESISSENSSLESMKKVCVNAMKRYLQTRPNASWESIRRAKDL-RDAHFSLPVHQIFDNSA 485
Query: 491 EGGELMALAFSERLKAFRPKQ--TILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKII 548
E ++ +E L R + TI EA G KH+ + + M KKR +H+ II
Sbjct: 486 EKEDVTN---NEILGVIRQLKLPTIFEALG-----KHV---NPEAFATMTKKRKLHDHII 534
Query: 549 NLVHQQR----SSKSMEKEVEPEADSLMAKEIKETHGSKRKAKTFKDEEYFISSVPTNHH 604
QR ++ ++ VE + + ++ + + + ++ ++F+ +
Sbjct: 535 ARRAAQRAVGQTNNVLKNLVERKVS--LTDQLGACNANDEMSDNLENIDFFVPYSRGDEA 592
Query: 605 MEAGLSVRSDQGFGLNRLEAAVLDLVADDS-------GGLQKQKQVYHWDKRGKKYIKLN 657
E GLS+ + AA LDL D+S G +K V WD++ K++ ++
Sbjct: 593 TENGLSITGTKSQFCLDAAAASLDLPNDESQQVHGGVAGSHSRKLV--WDRKRKRFTGMD 650
Query: 658 NGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNAEETTSV 713
A+ K +KTESG + A+ KT YK W ++S + + + +AEE++SV
Sbjct: 651 AAHG-KANMKRIKTESGVWIPASYKTDKYKLWLKKSKSDIIQETSK---SAEESSSV 703
>gi|380486597|emb|CCF38600.1| ATP-dependent RNA helicase DBP10 [Colletotrichum higginsianum]
Length = 853
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 295/735 (40%), Positives = 420/735 (57%), Gaps = 92/735 (12%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+++ L+ N+ RAI +KG+ VPTPIQRKT+PLIL DVV MARTGSGKTAAF++PM++R
Sbjct: 43 FQAMGLNANLLRAITKKGFSVPTPIQRKTIPLILDRKDVVGMARTGSGKTAAFVIPMIER 102
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L H + G RALI+SP+R+LALQTLK KE + TDL+ LLVGGDSME QF ++ NP
Sbjct: 103 LRAHSAKVGTRALIMSPSRELALQTLKVVKEFSKGTDLKCILLVGGDSMEDQFSMMSSNP 162
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
DI+IATPGR +H E+ + L S++YVVFDEAD LF MGFA QL +IL L +RQ+LL
Sbjct: 163 DIVIATPGRFLHLKVEM-GLDLSSIKYVVFDEADRLFEMGFAAQLTEILYALPLSRQSLL 221
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSATLP++L EFA+AGL+DP LVRLD +TKISPDL+ AFF+++ EK AALL+++ + I
Sbjct: 222 FSATLPASLVEFARAGLQDPTLVRLDAETKISPDLESAFFSVKGAEKEAALLHILNDLIK 281
Query: 265 -----------------------------SDQQTLIFVSTKHHVEFLNVLFREEGLEPSV 295
++ T+IF +TKHHV++L +L + G S
Sbjct: 282 MPQGTPDGIPLDVVPSKKRKREGEGRGKPTEHSTIIFAATKHHVDYLALLLTKAGYAVSY 341
Query: 296 CYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVG 355
YG +DQ+AR+I+ FR + L+VTDVAARGIDIP+L NVIN+DFPP+PK+FVHRVG
Sbjct: 342 VYGSLDQEARRINTENFRNGRANILVVTDVAARGIDIPVLANVINYDFPPQPKVFVHRVG 401
Query: 356 RAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIAN 415
R ARAG+ G A+S V D YLLDL LFL + + V+ + ++
Sbjct: 402 RTARAGQRGWAYSIVRELDTPYLLDLQLFLGRRL---------------VVGHDTENFSH 446
Query: 416 GE-TIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRG 474
E + G + I++ + + +I+ AD+ ++++ T A +LY KT+ S +S +R
Sbjct: 447 AEDVVVGGLRRDKIEIQMEWMEKILKEEADIEAMRKVSTKAEKLYLKTRHSASSQSAKRA 506
Query: 475 KDL----PREGLHPMFKNVLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPS 530
++L LHP+F + E ++ FRP +TI E + +G S
Sbjct: 507 RELVGTKAWHSLHPIFGADINNAEQARNEMMAKISGFRPAETIFEI------GRGGKGSS 560
Query: 531 SQWVDVMK------------KKRAVHEKIINLVHQ--QRSSKSMEKEVEPEADSLMAKE- 575
S+ +VMK KK+A + + S ++ V EA E
Sbjct: 561 SEAAEVMKQLRKRITPHRGSKKKADSDDEMGDFDDAANDSDGGADEGVNAEAMEAYDSEN 620
Query: 576 -----------IKETHGSKRKAKTFKDEEYFISSVP--TNHHMEAGLSVRSDQGFGLNRL 622
+ T K+K ++KD E F++ P TN E G V S + +
Sbjct: 621 DQDDDDGFEVTVTNTGEKKKKPDSWKDPEVFMTYEPRSTNAAEERGYGVTSGAQTS-SFV 679
Query: 623 EAA---VLDLVADDSG---GLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAK 676
EAA +DL DD+ G + + WDK+ KY+ N E S K V+ ESG +
Sbjct: 680 EAARHLQMDLTNDDTTKGFGEPSKAKGMRWDKKQNKYVARQNDEDGSKGSKYVRGESGVR 739
Query: 677 VKAT-KTGIYKKWKE 690
+ A+ ++G + +W++
Sbjct: 740 IAASFQSGRFDRWRK 754
>gi|255956777|ref|XP_002569141.1| Pc21g21690 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590852|emb|CAP97066.1| Pc21g21690 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 913
Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust.
Identities = 292/742 (39%), Positives = 420/742 (56%), Gaps = 87/742 (11%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+++ LS + +AI RKG+ VPTPIQRKT+P+I+ DVV MARTGSGKTA+F++P
Sbjct: 83 KGGGFQAMGLSMTLLKAITRKGFSVPTPIQRKTIPVIMDDKDVVGMARTGSGKTASFVIP 142
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M+++L H G RALI+SP+R+LALQT+K KE+G+ T+L LL+GGDS+E QF +
Sbjct: 143 MIEKLKSHSTTFGARALIMSPSRELALQTMKVVKEMGKGTNLTSVLLIGGDSLEDQFGMM 202
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
A NPDIIIATPGR +H E+ DM L S++YVVFDEAD LF MGFA QL +IL L NR
Sbjct: 203 ASNPDIIIATPGRFLHLKVEM-DMDLSSIKYVVFDEADRLFEMGFAAQLTEILHGLPTNR 261
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSATLP +L EFA+AGL++P L+RLD + K+SPDL+ AFF ++ +K ALL+++
Sbjct: 262 QTLLFSATLPKSLVEFARAGLQEPSLIRLDTENKVSPDLQNAFFAIKSSDKEGALLHILH 321
Query: 261 EHIS--------------------------------------SDQQTLIFVSTKHHVEFL 282
+ I + T++F +TKHHV++L
Sbjct: 322 DIIKMPTGETDIGVRLRQEAENPSRKRKRSDVRLPSGFKESPTKHSTIVFAATKHHVDYL 381
Query: 283 NVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWD 342
L E G S YG +DQ AR HV FR+ + L+VTDVAARGIDIP+L NVIN+D
Sbjct: 382 YSLLVEAGFATSYAYGSLDQTARNHHVQNFRSGISNILVVTDVAARGIDIPVLANVINYD 441
Query: 343 FPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDM 402
FP +PKIF+HRVGR ARAG+ G ++S V +D YLLDL LFL + + VL
Sbjct: 442 FPSQPKIFIHRVGRTARAGQKGWSYSLVRDKDAPYLLDLQLFLGRRL--------VL--- 490
Query: 403 DGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKT 462
G D A + + G + I + V++++D D+ ++ +LY +T
Sbjct: 491 -GRQYGTDLNFAE-DVVVGTLSREAISRSCEWVQKVLDDDVDIFGQKQVSQKGEKLYLRT 548
Query: 463 KPLPSKESIRRGKDLPREG----LHPMFKNVLEGGELMALAFSERLKAFRPKQTILEAE- 517
+ S ES +R K++ +HP+F + E+ + R+ +RP +TI EA
Sbjct: 549 RNSASAESAKRAKEVVSSDHWAEIHPLFNDATSQREVERESMLARIGGYRPHETIFEANN 608
Query: 518 ---GEAARSKHLQGPSSQWVDV-MKKKRAVHEKIINLVHQQRSSKSMEKEVE----PE-A 568
G+ A ++ + V K+KRA + + + E EVE PE A
Sbjct: 609 RRGGKVADNEAVDTIRRIRTTVENKRKRADAKAEAEMAALGMPTPGEEGEVEDDDIPEKA 668
Query: 569 DSLMAK----EIKETHGS----------KRKAKTFKDEEYFISSVPTNHHMEA----GLS 610
M++ E++ T S K +A F++ +YF+ P N+ M G+
Sbjct: 669 GENMSEASDDELEVTFSSYNSKPKQGEKKDEAAAFQNPDYFMGYTPQNNDMAEDKAYGVH 728
Query: 611 VRSDQGFGLNRLEAAVLDLVADDSG-GLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVV 669
++ F + A +DL D+ G + + + WDKR KKY+ N E S ++V
Sbjct: 729 SGTNSNFASDS-RNATMDLNGDEGQRGFGEARSIMRWDKRHKKYVARQNDEDGSKGSRLV 787
Query: 670 KTESGAKVKAT-KTGIYKKWKE 690
+ ESGAK+ A+ ++G ++ WK+
Sbjct: 788 RGESGAKIAASFRSGRFQAWKK 809
>gi|85107031|ref|XP_962298.1| hypothetical protein NCU07712 [Neurospora crassa OR74A]
gi|74696531|sp|Q7S9J4.1|DBP10_NEUCR RecName: Full=ATP-dependent RNA helicase dbp-10
gi|28923900|gb|EAA33062.1| hypothetical protein NCU07712 [Neurospora crassa OR74A]
Length = 934
Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust.
Identities = 300/748 (40%), Positives = 423/748 (56%), Gaps = 94/748 (12%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+++ L+ ++ RAI RKG+ VPTPIQRK +PLIL DVV MARTGSGKTAAF++P
Sbjct: 97 KGGGFQAMGLNAHLLRAITRKGFSVPTPIQRKAIPLILERKDVVGMARTGSGKTAAFVIP 156
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M++RL H P+ G RALI+SP+R+LALQTLK KELGR TDL+ LLVGGDS+E QF +
Sbjct: 157 MIERLKGHSPRVGSRALIMSPSRELALQTLKVVKELGRGTDLKTVLLVGGDSLEEQFGMM 216
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
A NPDIIIATPGR +H E+ ++SL S++YVVFDEAD LF MGFA +L +IL L +R
Sbjct: 217 ASNPDIIIATPGRFLHLKVEM-NLSLASIKYVVFDEADRLFEMGFATELTEILHALPPSR 275
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSATLPS+L EFA+AGL++P LVRLD +TK+SPDL+ AFF ++ EK ALL+++
Sbjct: 276 QTLLFSATLPSSLVEFARAGLQEPSLVRLDAETKVSPDLESAFFAVKGGEKEGALLHLLH 335
Query: 261 EHIS---------------------------------SDQQTLIFVSTKHHVEFLNVLFR 287
+ I ++ T+IF +TKHHVE++ L +
Sbjct: 336 DVIKVPLGPPEGTKEESDELQARKRKREYRPNPKEKPTEYSTIIFTATKHHVEYIANLLK 395
Query: 288 EEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKP 347
G S YG +DQ AR I V FR +T L+VTDVAARGID+P L NVIN+DFP +P
Sbjct: 396 LAGFAVSYVYGSLDQTARLIQVDNFRRGRTHILVVTDVAARGIDMPALANVINYDFPSQP 455
Query: 348 KIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMS 407
KIFVHRVGR ARAG+ G A+ V D+ YLLDL LFL + + ++ D
Sbjct: 456 KIFVHRVGRTARAGQRGWAYGLVRQSDVPYLLDLQLFLGRKLIIGHDQKNPSFAAD---- 511
Query: 408 KIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPS 467
+ G + +D+ + V + + SADL +L+ A +LY KT+ S
Sbjct: 512 ----------VVVGTLKRDGVDVNIEWVEKALKESADLKALKGVAAKAEKLYMKTRNSAS 561
Query: 468 KESIRRGKDLPRE----GLHPMFKNVLEGGELMALAFSERLKAFRPKQTILE--AEGEAA 521
+S +R +++ + LHP+F + R+ F+P++TI E +G+++
Sbjct: 562 SQSAKRAREVTQSRGWTQLHPLFGEEAAEAQAARDDLLSRINRFKPQETIFELGPKGKSS 621
Query: 522 RSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKSMEKEVE---------------- 565
R+K + + ++K E ++ + K +E
Sbjct: 622 RNKAAEVVRNMRSRFKERKTTNDEDDEDVDMEDAEGKPDGEETNAFEDFEDEEEEGEAEE 681
Query: 566 ---------PEAD---SLMAKEIKETHGSKRKAK--TFKDEEYFISSVP--TNHHMEAGL 609
P AD S M + + +K+K F+D E F+S P T+ E
Sbjct: 682 AEEAEAKEDPYADDSDSEMEVTVSSSMHTKKKGGPVNFQDPEIFMSYTPRTTSLAEEKAY 741
Query: 610 SVRSDQGFGLNRLEA---AVLDLVADDSG---GLQKQKQVYHWDKRGKKYIKLNNGERVS 663
V S G + +EA A +DL D+S GL + ++ WDKR KY+ + N E S
Sbjct: 742 GVHSGGYSGNSFVEAARDATMDLTNDESAKNFGLPTKSKM-RWDKRHSKYVAVANDEDGS 800
Query: 664 ASGKVVKTESGAKVKAT-KTGIYKKWKE 690
K+++ ESG K+ A+ K+G + +W++
Sbjct: 801 KGAKMIRGESGVKIAASFKSGRFDRWRK 828
>gi|302895429|ref|XP_003046595.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256727522|gb|EEU40882.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 897
Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust.
Identities = 295/736 (40%), Positives = 420/736 (57%), Gaps = 92/736 (12%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+++ L+ N+ +AI RKG+ VPTPIQRK++PLIL D+V MARTGSGKTAAF++P
Sbjct: 83 KGGGFQAMGLNSNLLKAITRKGFSVPTPIQRKSIPLILDRKDLVGMARTGSGKTAAFVIP 142
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M++RL H + G RALILSP+R+LA+QTLK KE GR TDL+ LLVGGDS+E QF +
Sbjct: 143 MIERLRAHSARFGTRALILSPSRELAIQTLKVVKEFGRGTDLKSVLLVGGDSLEEQFGYM 202
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
A NPDI+IATPGR +H E+ + L S++YVVFDEAD LF MGFA QL +IL L +R
Sbjct: 203 AANPDIVIATPGRFLHLKVEMS-LDLSSIQYVVFDEADRLFEMGFAAQLTEILHALPPSR 261
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
Q+LLFSATLP++L EFA+AGL+DP LVRLD +TK+SPDL+ AFF+++ EK +LL+++
Sbjct: 262 QSLLFSATLPASLVEFARAGLQDPSLVRLDAETKVSPDLESAFFSVKGAEKEGSLLHILH 321
Query: 261 EHIS-------------------------------SDQQTLIFVSTKHHVEFLNVLFREE 289
+ I ++ T+IF +TKHHVE+L L E
Sbjct: 322 DVIKMPVGLPESAKEQSEKGSKKRKRGPEGGSGKPTEHSTIIFTATKHHVEYLANLLIEA 381
Query: 290 GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKI 349
G S YG +DQ AR++ V FR KT L+VTDVAARGIDIP+L NVIN+DFPP+PK+
Sbjct: 382 GFAVSYVYGSLDQVARRMQVEDFRRGKTNILVVTDVAARGIDIPVLANVINFDFPPQPKV 441
Query: 350 FVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKI 409
FVHRVGR ARAG+ G ++S V D YLLDL LFL K + V+ + S
Sbjct: 442 FVHRVGRTARAGQRGWSYSLVRDTDAPYLLDLQLFLGKKL--------VIGQENTSPSFA 493
Query: 410 DQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKE 469
D + + G + ++ + +++ + D+++L+ A +LY KT+ + +
Sbjct: 494 D------DVVVGALKRDSVESHVEWFNKVLHDNDDVSALRGVAVKAEKLYLKTRNSAASQ 547
Query: 470 SIRRGKDL-PREG---LHPMFKNVLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKH 525
S +R ++L +G LHP+F ++G E R+ FRP++TI E H
Sbjct: 548 SAKRARELVGSQGWTQLHPLFGEDVDGAEQARADMLARISGFRPQETIFEV-------GH 600
Query: 526 LQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKSMEKEVEPEADSLMAK----------- 574
+++ VMK+ R + +V A +
Sbjct: 601 RDKSTTEAAQVMKQLRKNITPRRREEKKDEEEFDGLDDVPSGAQMDVDSDEEEEEEVEME 660
Query: 575 ----------EIKETHGSKRKAKT-FKDEEYFISSVPT--NHHMEAGLSVRSDQGFGLNR 621
E+ ++ + +K +T ++D E F+S P N E G V+S G G +
Sbjct: 661 DDEEDSDDDLEVTISNNNSKKGQTDWRDSEVFMSYTPRTFNAAEERGYGVQSG-GQGSSF 719
Query: 622 LEAA---VLDLVADDS----GGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESG 674
+EAA +DL D+S G + K WD + KKY+ N + S K+++ ESG
Sbjct: 720 IEAARDVTMDLTNDESAKAFGAPTRAK--MRWDTKSKKYVSRENDDDGSKGAKMIRGESG 777
Query: 675 AKVKAT-KTGIYKKWK 689
K+ A+ ++G + KWK
Sbjct: 778 VKIAASFQSGRFDKWK 793
>gi|336470872|gb|EGO59033.1| hypothetical protein NEUTE1DRAFT_60019 [Neurospora tetrasperma FGSC
2508]
gi|350291940|gb|EGZ73135.1| ATP-dependent RNA helicase dbp-10 [Neurospora tetrasperma FGSC
2509]
Length = 934
Score = 490 bits (1262), Expect = e-135, Method: Compositional matrix adjust.
Identities = 298/748 (39%), Positives = 423/748 (56%), Gaps = 94/748 (12%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+++ L+ ++ RAI RKG+ VPTPIQRK +PLIL DVV MARTGSGKTAAF++P
Sbjct: 97 KGGGFQAMGLNAHLLRAITRKGFSVPTPIQRKAIPLILERKDVVGMARTGSGKTAAFVIP 156
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M++RL H P+ G RALI+SP+R+LALQTLK KELGR TDL+ LLVGGDS+E QF +
Sbjct: 157 MIERLKGHSPRVGSRALIMSPSRELALQTLKVVKELGRGTDLKTVLLVGGDSLEEQFGMM 216
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
A NPDIIIATPGR +H E+ ++SL S++YVVFDEAD LF MGFA +L +IL L +R
Sbjct: 217 ASNPDIIIATPGRFLHLKVEM-NLSLASIKYVVFDEADRLFEMGFATELTEILHALPPSR 275
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSATLPS+L EFA+AGL++P LVRLD +TK+SPDL+ AFF ++ EK ALL+++
Sbjct: 276 QTLLFSATLPSSLVEFARAGLQEPSLVRLDAETKVSPDLESAFFAVKGGEKEGALLHLLH 335
Query: 261 EHIS---------------------------------SDQQTLIFVSTKHHVEFLNVLFR 287
+ I ++ T++F +TKHHVE++ L +
Sbjct: 336 DVIKVPLGPPEGTKEESEELQARKRKREYRPNPKEKPTEYSTIVFTATKHHVEYIANLLK 395
Query: 288 EEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKP 347
G S YG +DQ AR I V FR +T L+VTDVAARGID+P L NVIN+DFP +P
Sbjct: 396 LAGFAVSYVYGSLDQTARLIQVDNFRRGRTHILVVTDVAARGIDMPALANVINYDFPSQP 455
Query: 348 KIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMS 407
KIFVHRVGR ARAG+ G A+ V D+ YLLDL LFL + + ++ D
Sbjct: 456 KIFVHRVGRTARAGQRGWAYGLVRQSDVPYLLDLQLFLGRKLIIGHDQKNPSFAAD---- 511
Query: 408 KIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPS 467
+ G + +D+ + V + + S DL +L+ A +LY KT+ S
Sbjct: 512 ----------VVVGTLKRDGVDVNIEWVEKALKESTDLKALKGVAAKAEKLYMKTRNSAS 561
Query: 468 KESIRRGKDLPRE----GLHPMFKNVLEGGELMALAFSERLKAFRPKQTILE--AEGEAA 521
+S +R +++ + LHP+F + R+ F+P++TI E +G+++
Sbjct: 562 SQSAKRAREVTQSRGWTQLHPLFGEEAAEAQAARDDLLNRINRFKPQETIFELGPKGKSS 621
Query: 522 RSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKSMEKEV----------------- 564
R+K + + ++K E ++ + K E+
Sbjct: 622 RNKAAEVVRNMRSRFKERKTTNDEDDEDVDMEDAEGKPDGGEINAFEDFEDEEEEGEAEE 681
Query: 565 --------EPEA---DSLMAKEIKETHGSKRKAK--TFKDEEYFISSVP--TNHHMEAGL 609
+P A DS M + + +K+K F+D E F+S P T+ E
Sbjct: 682 AEEAGAKEDPYADDSDSEMEVTVSSSMHTKKKGGPVNFQDPEIFMSYTPRTTSLAEEKAY 741
Query: 610 SVRSDQGFGLNRLEA---AVLDLVADDSG---GLQKQKQVYHWDKRGKKYIKLNNGERVS 663
V S G + +EA A +DL D+S GL + ++ WDKR KY+ + N E S
Sbjct: 742 GVHSGGYSGNSFVEAARDATMDLTNDESAKNFGLPTKSKM-RWDKRHSKYVAVANDEDGS 800
Query: 664 ASGKVVKTESGAKVKAT-KTGIYKKWKE 690
K+++ ESG K+ A+ K+G + +W++
Sbjct: 801 KGAKMIRGESGVKIAASFKSGRFDRWRK 828
>gi|425777534|gb|EKV15702.1| ATP dependent RNA helicase (Dbp10), putative [Penicillium digitatum
Pd1]
gi|425779558|gb|EKV17605.1| ATP dependent RNA helicase (Dbp10), putative [Penicillium digitatum
PHI26]
Length = 912
Score = 490 bits (1262), Expect = e-135, Method: Compositional matrix adjust.
Identities = 288/742 (38%), Positives = 417/742 (56%), Gaps = 87/742 (11%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+++ LS + +AI RKG+ VPTPIQRKT+P+I+ DVV MARTGSGKTA+F++P
Sbjct: 82 KGGGFQAMGLSMTLLKAITRKGFSVPTPIQRKTIPVIMDDKDVVGMARTGSGKTASFVIP 141
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M+++L H G RALI+SP+R+LALQTLK KE+G+ T+L LL+GGDS+E QF +
Sbjct: 142 MIEKLKSHSTSFGARALIMSPSRELALQTLKVVKEMGKGTNLTSVLLIGGDSLEDQFGMM 201
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
A NPDIIIATPGR +H E+ DM L S++YVVFDEAD LF MGFA QL +IL L NR
Sbjct: 202 ANNPDIIIATPGRFLHLKVEM-DMDLSSIKYVVFDEADRLFEMGFAAQLTEILHGLPTNR 260
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSATLP +L EFA+AGL++P L+RLD + K+SPDL+ AFF ++ +K ALL+++
Sbjct: 261 QTLLFSATLPKSLVEFARAGLQEPSLIRLDTENKVSPDLQNAFFAVKSSDKEGALLHILH 320
Query: 261 EHIS--------------------------------------SDQQTLIFVSTKHHVEFL 282
I ++ T++F +TKHHV++L
Sbjct: 321 NIIKMPTGETQIGGKLRQEAENPTRKRKRSDVRLPSGFKESPTEHSTIVFAATKHHVDYL 380
Query: 283 NVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWD 342
L E G S YG +DQ AR HV FR+ + L+VTDVAARGIDIP+L NVIN+D
Sbjct: 381 YSLLVEAGFATSYAYGSLDQTARNHHVQNFRSGISNILVVTDVAARGIDIPVLANVINYD 440
Query: 343 FPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDM 402
FP +PKIF+HRVGR ARAG+ G ++S V +D YLLDL LFL + + VL
Sbjct: 441 FPSQPKIFIHRVGRTARAGQKGWSYSLVRDKDAPYLLDLQLFLGRRL--------VLGRQ 492
Query: 403 DGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKT 462
G + + + G P+ + + V++++D D+ ++ +LY +T
Sbjct: 493 YGTELNFAE-----DVVVGTLPREPVSRSCEWVQKVLDDDVDIYGQKQVSQKGEKLYLRT 547
Query: 463 KPLPSKESIRRGKDLPREG----LHPMFKNVLEGGELMALAFSERLKAFRPKQTILEAE- 517
+ S ES +R K++ +HP+F + E+ + R+ +RP +TI EA
Sbjct: 548 RNSASAESAKRSKEVVSSDHWAEIHPLFNDATSEREVERESMLARIGGYRPHETIFEANN 607
Query: 518 ---GEAARSKHLQGPSSQWVDV-MKKKRAVHEKIINLVHQQRSSKSMEKEVEPE------ 567
G+ A ++ + V K+KRA + L S+ + +VE E
Sbjct: 608 RRGGKVADNEAVDTIRRLRTSVENKRKRADAKAEAELAALGMSAPGEDGQVEDEDVPEQA 667
Query: 568 -------AD-----SLMAKEIKETHGSKRK-AKTFKDEEYFISSVPTNHHMEA----GLS 610
+D + A K G K+ A F++ +YF+ P ++ M G+
Sbjct: 668 GENMSEASDDELEVTFSAYSSKSKQGEKKDAAAAFQNPDYFMGYTPQHNDMAEDKAYGVH 727
Query: 611 VRSDQGFGLNRLEAAVLDLVADDSG-GLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVV 669
++ F + A +DL D+ G + + + WDKR KKY+ N E S ++V
Sbjct: 728 SGTNSNFASDS-RNATMDLNGDEGKRGFGEARSIMRWDKRHKKYVARQNDEDGSKGSRLV 786
Query: 670 KTESGAKVKAT-KTGIYKKWKE 690
+ ESGAK+ A+ ++G ++ WK+
Sbjct: 787 RGESGAKIAASFRSGRFQAWKK 808
>gi|19113831|ref|NP_592919.1| ATP-dependent RNA helicase Dbp10 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|1175401|sp|Q09719.1|DBP10_SCHPO RecName: Full=ATP-dependent RNA helicase dbp10
gi|914885|emb|CAA90465.1| ATP-dependent RNA helicase Dbp10 (predicted) [Schizosaccharomyces
pombe]
Length = 848
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 306/738 (41%), Positives = 436/738 (59%), Gaps = 75/738 (10%)
Query: 3 LVSSKAELKRREKQKK-KSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGA 61
+ S E RR K KK K+ F+S+ L+ + RAI +KG+K PTPIQRKT+PL+L G
Sbjct: 48 IASKLLESNRRTKGKKGNGKASNFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGR 107
Query: 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121
DVV MARTGSGKTAAF++PM++ L + RALILSP R+LALQT+K K+ + TD
Sbjct: 108 DVVGMARTGSGKTAAFVIPMIEHLKSTLANSNTRALILSPNRELALQTVKVVKDFSKGTD 167
Query: 122 LRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181
LR +VGG S+E QF L+ PDI++ATPGR +H E++ + L S+EYVVFDEAD LF
Sbjct: 168 LRSVAIVGGVSLEEQFSLLSGKPDIVVATPGRFLHLKVEMK-LELSSIEYVVFDEADRLF 226
Query: 182 GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKL 241
MGFA QL +IL L +RQTLLFSATLP L +FAKAGL+DP LVRLDV++K+S DL+
Sbjct: 227 EMGFAAQLTEILHALPTSRQTLLFSATLPRTLVDFAKAGLQDPVLVRLDVESKVSADLQS 286
Query: 242 AFFTLRQEEKHAALLYMIREHI-----------------------------------SSD 266
AFF+++ E+ AALL ++++ I S
Sbjct: 287 AFFSVKTAEREAALLCILQDIIKLPLKDNVRPREIGNVNNPKKRKRALELALKGSESGSP 346
Query: 267 QQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVA 326
TL+FV TKHHVE+++ L + G S YG +DQ+AR ++ FR KT L+VTDVA
Sbjct: 347 DSTLVFVPTKHHVEYVSELLVQAGYSVSKIYGSLDQEARLNEINNFRLGKTNLLVVTDVA 406
Query: 327 ARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLS 386
+RGIDIPLL NVIN+DFPP+PK+FVHRVGR ARAGRTG A+S V +ED YLLDL LFL+
Sbjct: 407 SRGIDIPLLANVINYDFPPQPKVFVHRVGRTARAGRTGWAYSLVRAEDAGYLLDLQLFLN 466
Query: 387 KPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLN 446
+P+ S ++V D D +K + + G PQ ++ + + V+ I+ +L
Sbjct: 467 RPL--VTSSKQVKTDSDCDFTK--------QIVLGSLPQELVAELLEWVQRIVSRDVELQ 516
Query: 447 SLQRTCTNAFRLYSKTKPLPSKESIRRGKDL-PREGL---HPMFKN--VLEGGELMALAF 500
L +LY +T+ S ES +R K+L +G +P+F + V+E E A
Sbjct: 517 QLSNVAARGEKLYFRTRATCSAESAKRAKELVDSKGWSSNNPLFGDVSVIEAEEKYAELL 576
Query: 501 SERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKR------AVHEKIINLVHQQ 554
S ++ ++RP +T+ E + HL+ ++ ++M+K+R + ++ +
Sbjct: 577 S-KVSSYRPSETVF----EIGQRGHLK---TEAAEIMRKRRNKVKPKGIKSEVASDKITD 628
Query: 555 RSSKSMEKEVEPEADSLMAKEIKETHGSKRKAKTFKDEEYFISS-VPTNHHMEAGLSVRS 613
S +M + E E + + K KE SK+K FKD+EY++S P E G ++ S
Sbjct: 629 SSPGNMSEASESELEEVF-KNPKEL--SKKKTTDFKDKEYYMSHYAPKESIQETGYAINS 685
Query: 614 DQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVS-ASGKVVKTE 672
+ F A+LDL +D G Q +K WD + KK++ + N E S S K+++ E
Sbjct: 686 GENF-TTAARHAILDLT-NDEGIEQSRKGGQRWDPKKKKFVNIINDEDGSKGSPKIIRGE 743
Query: 673 SGAKVKAT-KTGIYKKWK 689
SG K+ AT ++G + +WK
Sbjct: 744 SGVKLPATYRSGRFDEWK 761
>gi|449675652|ref|XP_002156296.2| PREDICTED: ATP-dependent RNA helicase DDX54-like [Hydra
magnipapillata]
Length = 802
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 280/661 (42%), Positives = 392/661 (59%), Gaps = 94/661 (14%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
+E++KK+ K+GGF+S+ S +++ I RKGYKVPTPIQRKT+P+++ G DVVAMARTGSG
Sbjct: 113 KEQRKKQKKTGGFQSMGFSYAIYKGIIRKGYKVPTPIQRKTIPVLMDGKDVVAMARTGSG 172
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTAAFL+P+ Q+L H P G R LILSPTR+LA+QTLKF KELG++T L+ ++++GGDS
Sbjct: 173 KTAAFLLPLFQKLQTHSPNGS-RGLILSPTRELAIQTLKFAKELGKFTTLKFAIILGGDS 231
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
+E QF L QNPDIIIATPGR +H L E++ L+ +EYVVFDEAD LF MGF+ QLH+I
Sbjct: 232 LEEQFSALHQNPDIIIATPGRFLHLLVEMDIKKLEFIEYVVFDEADRLFEMGFSVQLHEI 291
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
+ +L +RQT+L SATLP L +F AFF +R ++K
Sbjct: 292 IARLPVSRQTVLVSATLPKVLVDFT------------------------AFFLIRPDDKL 327
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
A LLY+++ I SD+QT+IFV+TKHHVE+L L G+ S Y +DQ ARKI++++F
Sbjct: 328 ACLLYILQTSIPSDEQTIIFVATKHHVEYLQQLLTHAGINCSYIYSSLDQTARKINLAKF 387
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
+ + T LIVTD+AARGIDIP+LDNVIN+DFP KPK+FVHRVGR ARAGRTG A+SFV
Sbjct: 388 QKKITKVLIVTDIAARGIDIPMLDNVINFDFPSKPKLFVHRVGRVARAGRTGMAYSFVQK 447
Query: 373 EDMAYLLDLHLFLSKPIRAA--PSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDL 430
++MA+LLDLHLFL++PI+ + S+E+ NG + G Q+ I
Sbjct: 448 DEMAFLLDLHLFLTQPIKFSNENSQED-----------------NG--LIGSVSQSAIVP 488
Query: 431 VSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPRE--GLHPMFK- 487
D + ++ L S+ N ++ Y K++ S SI+R K++ +HP+F
Sbjct: 489 HQDFINNTTAVNSTLQSMYTVMLNGYKQYIKSRENASVASIKRSKEINYALISIHPIFNK 548
Query: 488 ----NVLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAV 543
E EL L L+ F+PK T+ E S + V+VMK+KR
Sbjct: 549 KSGSEPSEAVELNKLLLD--LQKFKPKLTVFETMNTKK--------SKETVNVMKEKRLY 598
Query: 544 HEKIINLVHQQRSSK-------SMEKEVEPEADSLMAKEIKETHGSKRKAKTFKDEEYFI 596
H +I H + SK S E E AD ++ + + +KDE Y
Sbjct: 599 HTNVIE--HCKAKSKVTPLSLESTEIPTETLADDKYVADVFSINKN-----VYKDENY-- 649
Query: 597 SSVPTNHHMEAGLSVRSDQGFGLNRLEAAV----LDLVADDSGGLQKQK---QVYH-WDK 648
+P + + ++GF L E L++ +DD ++ QK + Y+ W K
Sbjct: 650 --IP-----HQSIDIDREKGFQLTSFEKEAQNVSLEVFSDDRVTMKNQKAAQKCYNQWIK 702
Query: 649 R 649
+
Sbjct: 703 K 703
>gi|453081414|gb|EMF09463.1| DEAD-domain-containing protein [Mycosphaerella populorum SO2202]
Length = 849
Score = 486 bits (1252), Expect = e-134, Method: Compositional matrix adjust.
Identities = 306/842 (36%), Positives = 454/842 (53%), Gaps = 130/842 (15%)
Query: 28 LNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQ 87
+ L+ ++ +AI RKG+ VPTPIQRKT+PLIL G DVV MARTGSGKTAAF++PM+++L
Sbjct: 1 MGLNTHLLKAITRKGFNVPTPIQRKTIPLILDGQDVVGMARTGSGKTAAFVIPMIEKLKA 60
Query: 88 HVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDII 147
H + G RA+ILSP+R+LALQTLK KE+G+ TDLR L+VGGD +E F +A NPDII
Sbjct: 61 HSAKFGARAMILSPSRELALQTLKVVKEMGKGTDLRTVLIVGGDGIEDNFGSMAANPDII 120
Query: 148 IATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSA 207
IATPGR H E+ + L SV+Y+VFDEAD LF MGFA QL +I+ L RQTLLFSA
Sbjct: 121 IATPGRFEHVKVEM-GLDLSSVKYMVFDEADRLFEMGFAAQLMEIMHSLPATRQTLLFSA 179
Query: 208 TLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI---- 263
TLP +L EFA+AGL+DP LVRLD ++KI+P L+ AFFT+++ EK ALL+++++ I
Sbjct: 180 TLPKSLVEFARAGLQDPKLVRLDAESKIAPGLQSAFFTVKRAEKEGALLHILQDVIKMPT 239
Query: 264 -----------------------------------SSDQQTLIFVSTKHHVEFLNVLFRE 288
+S T++F STKHHVE+L +
Sbjct: 240 GANDREKLANEARKGSGGDRKKRKRGADGPAANEATSPHSTVVFTSTKHHVEYLANFLKA 299
Query: 289 EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPK 348
G S YG +DQ ARK+ V FR+ + L+VTDVAARG+D+PLL NVIN+DFP +PK
Sbjct: 300 WGYATSYVYGSLDQTARKMQVHDFRSGISNILVVTDVAARGLDVPLLANVINYDFPSQPK 359
Query: 349 IFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSK 408
IFVHRVGR ARAG+ G ++S +T DM YLLDL LFLS+ + + +E +
Sbjct: 360 IFVHRVGRTARAGKEGWSYSLITQPDMPYLLDLQLFLSRKLIMGRTSKEPGM-------- 411
Query: 409 IDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSK 468
AI + G F + ++ ++ ++ID DL S++ + Y +T+ S
Sbjct: 412 FQHAI-----VTGNFRRDALERYTEEAAKVIDEDIDLQSMRDVAAKGEKQYLRTRNSASA 466
Query: 469 ESIRRGKDLPREGLHPMFKNVLEGG-----ELMALAFSERLKAFRPKQTILE-------- 515
ES++R K + + + E E L R+ +FRP +T+ E
Sbjct: 467 ESVKRAKQVAQSEDSSATNMLFEADESADVEQQRLDMLARVSSFRPVETVFEVGKRGDAK 526
Query: 516 -AEGEAARSKHLQGPSSQWVDVMKKKRAVHEKII--------------NLVHQQRSSKSM 560
A E + + + + + ++ A+ + ++ L+ Q + M
Sbjct: 527 DAAAEVMKKRRMTIEAQKQRKAQAQENAMEDDLVISKGAAAADDSDSDELILTQPNGVDM 586
Query: 561 EKEVEPEADSLMAKEIKETHGSKRKAKTFK--------DEEYFISSVPTNHHMEAGLSVR 612
E + E + A + SKR+AK K D+E+F+S P+ +M
Sbjct: 587 ELASDSELEMTFATP-SDPSSSKRQAKKAKRTADASAQDDEFFMSYTPSTINMV------ 639
Query: 613 SDQGFG------------LNRLEAAVLDLVADDSGGLQ---KQKQVYHWDKRGKKYIKLN 657
D+G+G L++ +A +DL D+ ++ K WDK+ KKY++
Sbjct: 640 EDKGYGVHSGGTNASNHFLDQARSATMDLNGDEDSSMKLATKAGSGLRWDKKSKKYVQRA 699
Query: 658 NGERVSASGKVVKTESGAKVKAT-KTGIYKKW-KERSHKKVYLKGASNEGNAEETTSVPG 715
N E S K+++ ESG K+ A+ K+G + +W K+ +++ G + N+
Sbjct: 700 NDEDGSKGAKMIRGESGLKIAASFKSGRFDRWRKDNRVERLPRVGEMEKANSHH------ 753
Query: 716 GRHLGGNNRKFRGG--KNQQRSVPNAHVCSEIKDLDQVRKER-----QKKADRIAFMKGK 768
HL ++ + GG K++Q P + +D VRK+R +K+ + A KGK
Sbjct: 754 --HLSNSDSQRGGGRFKHKQERAPKE--ADKYRDDYHVRKKRVAEAKEKRIGKYADGKGK 809
Query: 769 TQ 770
++
Sbjct: 810 SE 811
>gi|89269500|emb|CAJ82782.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 [Xenopus (Silurana)
tropicalis]
Length = 437
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 237/388 (61%), Positives = 299/388 (77%), Gaps = 5/388 (1%)
Query: 5 SSKAELKRRE----KQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSG 60
+S EL RE + KKK KSGGF+S+ LS VF+ + +KGYKVPTPIQRK +P+IL G
Sbjct: 51 TSDTELDTREMVRAQNKKKKKSGGFQSMGLSYPVFKGVMKKGYKVPTPIQRKVIPVILDG 110
Query: 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120
DVVAMARTGSGKTA FL+PM ++L H Q GVR LILSPTR+LALQTLKFTKELG++T
Sbjct: 111 KDVVAMARTGSGKTACFLIPMFEKLKAHSAQTGVRGLILSPTRELALQTLKFTKELGKFT 170
Query: 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL 180
L+ +L++GGD ME QF L +NPDIIIATPGRLMH E+ ++ L++VEYVVFDEAD L
Sbjct: 171 GLKTALILGGDKMEDQFAALHENPDIIIATPGRLMHVAIEM-NLKLRTVEYVVFDEADRL 229
Query: 181 FGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLK 240
F MGFAEQL +I+ +L E RQTLLFSATLP L EFA+AGL +P L+RLDVDTK+S LK
Sbjct: 230 FEMGFAEQLQEIISRLPETRQTLLFSATLPKMLLEFARAGLTEPVLIRLDVDTKLSDQLK 289
Query: 241 LAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDM 300
L+FF +R E+K A LL+++R + +QT+IFV+TKHH E+L L +G+ S Y +
Sbjct: 290 LSFFNVRVEDKPAVLLHLLRCVVKPQEQTVIFVATKHHAEYLRELLDMQGIPCSHIYSAL 349
Query: 301 DQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARA 360
DQ ARKI++ F K L+VTDVAARGIDIP+LDNVIN++FPPK K+F+HRVGR ARA
Sbjct: 350 DQTARKINLGLFLHGKVRALLVTDVAARGIDIPMLDNVINYNFPPKAKLFLHRVGRVARA 409
Query: 361 GRTGTAFSFVTSEDMAYLLDLHLFLSKP 388
GR+GTA+S + +++ Y+ DLHLFL +P
Sbjct: 410 GRSGTAYSLIAPDEIPYVYDLHLFLGRP 437
>gi|296806549|ref|XP_002844084.1| ATP-dependent RNA helicase DBP10 [Arthroderma otae CBS 113480]
gi|238845386|gb|EEQ35048.1| ATP-dependent RNA helicase DBP10 [Arthroderma otae CBS 113480]
Length = 930
Score = 483 bits (1243), Expect = e-133, Method: Compositional matrix adjust.
Identities = 303/818 (37%), Positives = 437/818 (53%), Gaps = 153/818 (18%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+++ L+PN+ +AI RKG+ VPTPIQRKT+PL+L DVV MARTGSGKTAAF++P
Sbjct: 86 KGGGFQAMGLNPNLLKAITRKGFSVPTPIQRKTIPLLLDDQDVVGMARTGSGKTAAFVIP 145
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M+++L H + G R LILSP+R+LALQTLK KELGR TDL+ LLVGGDS+E QF +
Sbjct: 146 MIEKLKSHSTKVGARGLILSPSRELALQTLKVVKELGRGTDLKCVLLVGGDSLEEQFGYM 205
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
A NPDIIIATPGR +H E+ + L S+ LF MGFA QL +IL L +R
Sbjct: 206 AGNPDIIIATPGRFLHLKVEMS-LDLSSIR---------LFEMGFAAQLTEILHALPSSR 255
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSATLP +L EFA+AGL++P L+RLD D+KISP+L+ AFFT++ +K ALL+++
Sbjct: 256 QTLLFSATLPKSLVEFARAGLQEPTLIRLDADSKISPELQSAFFTVKSADKEGALLHILH 315
Query: 261 EHIS-------------------------------------------SDQQTLIFVSTKH 277
+ I ++ T++FV+TKH
Sbjct: 316 DLIKIPTGETEAGKLAAKEAKEAKQDNRNSKKRKRSETKGPGAHVIPAEHSTIVFVATKH 375
Query: 278 HVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDN 337
HVE++ L R G S YG ++Q ARKI V FRA + L+VTDVAARGIDIP+L N
Sbjct: 376 HVEYIATLLRHSGFAVSYAYGSLNQTARKIQVQNFRAGISNILVVTDVAARGIDIPVLAN 435
Query: 338 VINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPI---RAAPS 394
VIN+DFP +PKIF+HRVGR ARAG+ G ++S + D YL+DL LFL + + RAA
Sbjct: 436 VINYDFPSQPKIFIHRVGRTARAGQKGWSYSLIRDSDAPYLIDLQLFLGRQLLMGRAATE 495
Query: 395 EEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTN 454
D+ + G P+ ++ + V +++ D+ L+
Sbjct: 496 NANYAEDI----------------VVGSLPRRSLESHCEYVDKLLSEDVDIEGLRSVSIR 539
Query: 455 AFRLYSKTKPLPSKESIRRGKDLPREG----LHPMFKNV---LEGGELMALAFSERLKAF 507
+LY KT+ S ES +R KD+ +HP+F + LE LA R+ +
Sbjct: 540 GEKLYMKTRNSASAESAKRAKDIVAADAWGTMHPLFNDESSRLEAEREQMLA---RVGGY 596
Query: 508 RPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEK--------IINLVHQQRSSKS 559
+P++T+ E G+ + + + + V+VM+K R+V E+ +L Q +
Sbjct: 597 KPQETVFEVMGK----RGGKSGNEEAVEVMRKIRSVMERKKLRRELASQSLPLQNTQAAQ 652
Query: 560 MEKEVEPEADSLMAKEIKET------------------------HGSKR-------KAKT 588
++ E AKE + G R ++ +
Sbjct: 653 IDDESGENMSDASAKEDDDAPIQGDPDMSLADESDLEVTFSYPKQGKSRSNTQDGNQSNS 712
Query: 589 FKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNR--------LEA---AVLDLVADDSG-G 636
F++ EYF+S PT+ +S+ ++G+G++ +EA A +DL D+ G
Sbjct: 713 FQNPEYFMSYTPTS------ISLTENRGYGVHTGSNSNTSFVEASRSATMDLNGDEGARG 766
Query: 637 LQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKE-RSHK 694
L + WDKR KKY+ N E S K+V+ ESGAK+ A+ ++G + WK+ +
Sbjct: 767 LGGAGSIKRWDKRHKKYVLRQNDEDGSKGEKLVRGESGAKIAASFRSGRFDSWKKGKRLG 826
Query: 695 KVYLKGASNEGNAEETTSVPGGRHLGGNNRKFRGGKNQ 732
++ G N T +P +RK+R K Q
Sbjct: 827 RLPRVGEMENSNLGSTGGIP--------SRKYRHNKEQ 856
>gi|160380704|sp|A7ESL7.2|DBP10_SCLS1 RecName: Full=ATP-dependent RNA helicase dbp10
Length = 920
Score = 483 bits (1242), Expect = e-133, Method: Compositional matrix adjust.
Identities = 324/865 (37%), Positives = 458/865 (52%), Gaps = 143/865 (16%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+++ L+ ++ +AI RKG+ VPTPIQRKT+PL+L DVV MARTGSGKTAAF++P
Sbjct: 86 KGGGFQAMGLNSHLLKAISRKGFNVPTPIQRKTIPLVLDNQDVVGMARTGSGKTAAFVIP 145
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M+++L H + G RALI+SP+R+LALQTLK KE GR TDL+ LLVGGDS+E QF +
Sbjct: 146 MIEKLRAHSVRVGARALIMSPSRELALQTLKVVKEFGRGTDLKCVLLVGGDSLEEQFGFM 205
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
A NPDI+IATPGR +H E+ + L S++YVVFDEAD LF MGFA QL +IL L +R
Sbjct: 206 AANPDIVIATPGRFLHLKVEMS-LDLSSMKYVVFDEADRLFEMGFAAQLGEILHALPISR 264
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSATLP +L EFA+AGL++P LVRLD ++K+SPDL+ AFF+++ EK ALL++++
Sbjct: 265 QTLLFSATLPKSLVEFARAGLQEPSLVRLDAESKVSPDLQSAFFSVKGAEKEGALLHILQ 324
Query: 261 EHIS---------------------------------SDQQTLIFVSTKHHVEFLNVLFR 287
+ + ++ T+IF +TKHHV++L L R
Sbjct: 325 DLVKMPTGLPENALNATDNFSKKRKRGPDGPTKKLKPTEHSTIIFAATKHHVDYLASLLR 384
Query: 288 EEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKP 347
G S YG +DQ AR I V FR K+ L+VTDVAARGIDIP+L NVIN+DFPP+P
Sbjct: 385 MSGFAVSHAYGSLDQTARNIQVEDFRTGKSNILVVTDVAARGIDIPVLANVINYDFPPQP 444
Query: 348 KIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRA------APSEEEVLLD 401
K+FVHRVGR ARAG+ G ++S V D YLLDL LFL + + +P+ E
Sbjct: 445 KVFVHRVGRTARAGQRGWSYSLVRDTDAPYLLDLQLFLGRRLLLGRDCGDSPNYAE---- 500
Query: 402 MDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSK 461
+ I G + ++ S+ + +++ DL +L+ +LY K
Sbjct: 501 ---------------DVIVGALQRNEVESKSEWITKLLYDDDDLTALRNVAGKGEKLYVK 545
Query: 462 TKPLPSKESIRRGKD-LPREG---LHPMFKNVLEGGELMALAFSERLKAFRPKQTILEAE 517
T+ S ES +R K+ + +G LHP+FK+V G E L ++ FRP +T+ E
Sbjct: 546 TRNSASSESAKRAKEVVASKGWMELHPLFKDVTNGAEQARLEMLAKISGFRPNETVFEI- 604
Query: 518 GEAARSKHLQGPSSQWVDVMKKKRAVHEKII------------------------NLVHQ 553
G+ ++ H S+ ++M+ +R EKII + +
Sbjct: 605 GQKGKAAH-----SEAAEIMRHRR---EKIIPRRQKEEDEKAAAAAAAAEEDNFDSPAEE 656
Query: 554 QRSSKSMEKEVEPEADSLMAKEIKETHGSKRKAK--------TFKDEEYFISSVP--TNH 603
+ +E V D + E + KA ++KD E F+S P N
Sbjct: 657 NDDNDDLEVTVTGGDDDMAEASDGELEVTFSKAAQKGKGRTLSWKDSENFMSYTPKTINT 716
Query: 604 HMEAGLSVRSDQ----GFGLNRLEAA---VLDLVADD---SGGLQKQKQVYHWDKRGKKY 653
E G V S N +EAA +DL DD S + + WDK+ KY
Sbjct: 717 AEERGYGVHSGSYNTASQNSNFVEAARGVTMDLTNDDGAKSFAEPSKAKGMRWDKKNSKY 776
Query: 654 IKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNAEETTS 712
+ N E S K ++ ESG K+ A+ ++G + +W R KV + E E S
Sbjct: 777 VARANDEDGSKGIKYIRGESGQKIAASFQSGRFDRW--RKAHKVDRMPRTGEAEREGPAS 834
Query: 713 VPG-GRHLGGNNR-----------KFR------------GGKNQQRSVPNAHVCSEIKDL 748
G GR G + K+R +N+ S + SEIK
Sbjct: 835 AGGVGRGFGTRYKHKQERAPKEADKYRDDYHVRKKRVAEAKENRVGSFKDGSGKSEIKST 894
Query: 749 DQVRKERQKKADRIAFMKGKTQKGK 773
+ +RK+R+ + R A ++KGK
Sbjct: 895 EDIRKDRKLQERRKAKNARPSKKGK 919
>gi|451848327|gb|EMD61633.1| hypothetical protein COCSADRAFT_148565 [Cochliobolus sativus
ND90Pr]
Length = 891
Score = 483 bits (1242), Expect = e-133, Method: Compositional matrix adjust.
Identities = 309/841 (36%), Positives = 441/841 (52%), Gaps = 133/841 (15%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+++ L+ + +AI +KG+KVPTPIQRK +PL+L G DVV MARTGSGKTAAF++P
Sbjct: 75 KGGGFQAMGLNAALLKAITQKGFKVPTPIQRKAVPLMLQGEDVVGMARTGSGKTAAFVIP 134
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M+Q+L H + G R +I+SP+R+LALQTL+ KELGR TDLR LLVGGDS+E QF +
Sbjct: 135 MIQKLKAHSAKVGARGIIMSPSRELALQTLRVVKELGRGTDLRTILLVGGDSLEEQFSSM 194
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
NPDIIIATPGR +H E+ + L SV+Y+VFDEAD LF MGFA QL +IL L +R
Sbjct: 195 TTNPDIIIATPGRFLHLKVEM-GLDLSSVKYIVFDEADRLFEMGFAAQLSEILYALPASR 253
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI- 259
QTLLFSATLP +L EFA+AGL++P L+RLD ++KISPDLK A+FT++ ++ ALLY++
Sbjct: 254 QTLLFSATLPKSLVEFARAGLQEPKLIRLDAESKISPDLKSAYFTIKSGDRDGALLYLLD 313
Query: 260 ----------------REH-----------------ISSDQQTLIFVSTKHHVEFLNVLF 286
RE + + T+IF +TKH VE+L L
Sbjct: 314 SVIKVPVGETDAAKKAREESEKPGKKRKRSEGFVKDLPVAESTIIFAATKHRVEYLANLL 373
Query: 287 REEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPK 346
R G S YG++DQ ARK + FR T LIVTDVAARG+D+P +++VIN+DFP +
Sbjct: 374 RNLGYAISYVYGNLDQTARKEQIQDFRTGLTRILIVTDVAARGVDMPHINHVINYDFPSQ 433
Query: 347 PKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVM 406
PKIFVHRVGR ARAGR G A+S D+ YL+DL LFL K + S +E D V+
Sbjct: 434 PKIFVHRVGRTARAGRKGWAYSLCRHVDLPYLIDLQLFLGKRLLLGRSSDEPNYADDFVV 493
Query: 407 SKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLP 466
G ++ ++V + DL L R Y +T+
Sbjct: 494 --------------GSLSPWQVESSVEQVNRQLSEDEDLALLLSVAEKGERQYQRTRNQA 539
Query: 467 SKESIRRGKDLPREG----LHPMFKNVLEGGELMALAFSERLKAFRPKQTILEAEGEAAR 522
S +S+ R K+L H +F N + R+++FRP +T+ E
Sbjct: 540 SAQSVVRAKELAASPNFAETHMLFSNDAHTAQREKEDMLARIQSFRPAETVFEI------ 593
Query: 523 SKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKSMEKEVEPEADSLMAK-------- 574
+G S+ ++M+K+R V +Q++ ++ K+ E E D++ A
Sbjct: 594 --GKRGIHSETAEIMRKRR-------EQVERQKAKQAANKKGEDELDTIHASSREVNDED 644
Query: 575 -----EIKETHG------------------SKRKAKTFKDEEYFISSVP-TNHHMEAGLS 610
E++ T G K K ++K+++YF+S P N E
Sbjct: 645 MSSEDEVEVTEGVYDSDSDELEVSVSQPASKKSKQDSWKNDDYFMSYTPKENLAEEKAYG 704
Query: 611 VRSDQGFGLNRLE---AAVLDLVADDSGGLQKQ-KQVYHWDKRGKKYIKLNNGERVSASG 666
V N + AA + LV D+ G K WDK+ KKY+ N + S
Sbjct: 705 VSGGDAGNTNFVSAARAAEMSLVNDEIQGFADAVKSKMRWDKKSKKYVNRTNDDDGSKGA 764
Query: 667 KVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGN--AEETTSVPGGRHLGGNN 723
K+++ ESG K+ A+ ++G + W++ + K+ G N A + P +H
Sbjct: 765 KMIRGESGQKIAASFRSGRFDDWRKANKVKMPRVGEMESANRPAASFNNAPRYKH----- 819
Query: 724 RKFRGGKNQQRSVPNAHVC---------------------SEIKDLDQVRKERQKKADRI 762
+ + K R + HV SE++D+D VRK R+ + +R
Sbjct: 820 KSEKAPKQADRYRDDYHVQKKRVAEAQEKRIGAFKDGKGKSELRDVDTVRKNRKIQENRR 879
Query: 763 A 763
A
Sbjct: 880 A 880
>gi|406865244|gb|EKD18286.1| putative ATP-dependent RNA helicase dbp10 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 1090
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 314/844 (37%), Positives = 452/844 (53%), Gaps = 139/844 (16%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+++ L+ ++ +AI RKG+ VPTPIQRKT+PL+L DVV MARTGSGKTAAF++P
Sbjct: 211 KGGGFQAMGLNSHLLKAISRKGFSVPTPIQRKTIPLVLDHKDVVGMARTGSGKTAAFVIP 270
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M++RL H + G RA+I+SP+R+LALQTLK KE R TDL+ LLVGGDS+E QF +
Sbjct: 271 MIERLKSHSVKVGARAIIMSPSRELALQTLKVVKEFSRGTDLKCVLLVGGDSLEEQFGFM 330
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
A NPDI+IATPGR +H E+ + L SV+YVVFDEAD LF MGFA QL +IL L +R
Sbjct: 331 AGNPDIVIATPGRFLHLQVEMS-LDLSSVKYVVFDEADRLFEMGFAAQLTEILHALPTSR 389
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSATLP +L EFA+AGL++P LVRLD ++K+SPDL+ AFF+++ EK ALL+++
Sbjct: 390 QTLLFSATLPKSLVEFARAGLQEPTLVRLDAESKVSPDLQSAFFSIKSAEKEGALLHILN 449
Query: 261 EHIS--------------------------------SDQQTLIFVSTKHHVEFLNVLFRE 288
+ I ++ T+IF +TKHHV+++ L R
Sbjct: 450 DLIKMPTGLPDAAIKAAEDLNNKKRKRDGPNPRQKPTEHSTIIFAATKHHVDYITSLLRL 509
Query: 289 EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPK 348
G S YG +DQ AR V FR ++ L+VTDVAARGIDIP+L NVIN+DFPP+PK
Sbjct: 510 SGFAVSHAYGSLDQTARNQQVEDFRTGRSNILVVTDVAARGIDIPVLANVINYDFPPQPK 569
Query: 349 IFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSK 408
IFVHRVGR ARAG+ G ++S V D YLLDL LFL K +LL D
Sbjct: 570 IFVHRVGRTARAGKRGWSYSLVRDTDAPYLLDLQLFLGK---------RLLLGRDSG--- 617
Query: 409 IDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSK 468
D + I G + ++ S+ + +++ DL++L+ + Y +T+ S
Sbjct: 618 -DTPNYAEDVIVGALFRDKLEATSEWITKLLGDDDDLSALRGVAVKGEKQYIRTRNSASS 676
Query: 469 ESIRRGKD-LPREG---LHPMFKNVLEGGELMALAFSERLKAFRPKQTILEAEGEAARSK 524
ES R K+ + +G LHP+F N E + R+ FRP +T+ E G ++
Sbjct: 677 ESANRAKEVVASKGWMQLHPLFNNETTSTEQARIDMLARISGFRPAETVFEI-GTRGKAG 735
Query: 525 HLQGPSSQWVDVMKKKRAVHEKII-------NLVHQQRSSKSMEKEVEPEADSLMAKEI- 576
H + ++M+ +R EKI+ + ++ + + ++E A+ +A ++
Sbjct: 736 H-----GEAAEMMRHRR---EKIVPRRQKEEDEKAAAKAEAAGDTDMECSANFDIAVQLD 787
Query: 577 ---------------------------------KETHGSKRKAKTFKDEEYFISSVPTNH 603
K + K + ++KD E F+S P N
Sbjct: 788 EDNDDDDMEVTVTGGGKDNMSDASEADLEMTFSKASQKGKGRTLSYKDAENFMSYTPKN- 846
Query: 604 HMEAGLSVRSDQGFGL------------NRLEAA---VLDLVADD---SGGLQKQKQVYH 645
L+V ++G+G+ N +EAA +DL DD S + +
Sbjct: 847 -----LNVAEERGYGVHSGSYNTASQNSNFVEAARGLTMDLANDDGAKSFAEPSRAKGMR 901
Query: 646 WDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNE 704
WDK+ KY+ N E S K+++ ESG K+ A+ ++G + +W+ ++HK L
Sbjct: 902 WDKKNSKYVARANDEDGSKGKKMIRGESGQKIAASFQSGRFDRWR-KAHKVDRL---PRT 957
Query: 705 GNAEETTSVPGGRHLGGNNRKFRGGKNQQRSVPNAHVCSEIKDLDQVRKER--QKKADRI 762
G AE + GR G K++Q P +D VRK+R + K RI
Sbjct: 958 GEAEREGAGAVGRGFGTRY------KHKQEKAPKE--ADRYRDDFHVRKKRVAEAKEKRI 1009
Query: 763 AFMK 766
K
Sbjct: 1010 GVFK 1013
>gi|195389156|ref|XP_002053243.1| GJ23450 [Drosophila virilis]
gi|194151329|gb|EDW66763.1| GJ23450 [Drosophila virilis]
Length = 829
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 306/794 (38%), Positives = 436/794 (54%), Gaps = 129/794 (16%)
Query: 15 KQKKKSK-SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGK 73
K K KSK SGGF+SL L + + I ++GYKVPTPIQRKT+PLIL G DVVAMA+TGSGK
Sbjct: 29 KNKPKSKKSGGFQSLGLGFELLKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGK 88
Query: 74 TAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSM 133
TA FL+PM ++L + P G RALILSPTR+LA+QT KF K+LGR+ +L+ L++GGDSM
Sbjct: 89 TACFLIPMFEKLQRREPTKGARALILSPTRELAVQTYKFIKDLGRFMELKTILVLGGDSM 148
Query: 134 ESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKIL 193
+SQF + PD+I+ATPGR +H E+ D+ L S+EYVVFDEAD LF MGF EQL++ L
Sbjct: 149 DSQFSAIHTCPDVIVATPGRFLHLCVEM-DLKLNSIEYVVFDEADRLFEMGFGEQLNETL 207
Query: 194 GQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHA 253
+L +RQ ++FSATLP L EFA+AGL DP L+RLDV++K+ L L F R ++++
Sbjct: 208 HRLPSSRQMVMFSATLPKLLVEFARAGLSDPVLIRLDVESKLPETLALKFLYCRPDDRYT 267
Query: 254 ALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFR 313
AL+ +++ I QT++F T+HHVE ++ + + G+ + Y +D ARKI+ ++F
Sbjct: 268 ALVVLLKYVIPQQAQTVVFAGTQHHVELISYILTQAGISNTSVYSSLDPAARKINTAKFA 327
Query: 314 ARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSE 373
++K LIVTDVAARGIDIP LD V+N FP PK+FVHRVGR ARAGRTGTA+S +++
Sbjct: 328 SKKVSVLIVTDVAARGIDIPSLDYVVNLHFPGIPKLFVHRVGRCARAGRTGTAYSIFSTD 387
Query: 374 DMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSD 433
D A+LLDLHLFL++P N + G PQ +++
Sbjct: 388 DTAHLLDLHLFLNRPFN-----------------------INDSSSIGTIPQDLLEEEYL 424
Query: 434 RVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLH---------P 484
V E I S + + RT NA++ Y ++P S ++ R K + L P
Sbjct: 425 SVAE-IKKSHHIAGVLRTSENAYKKYLSSRPTASTDANARAKKIKFFALKSLEDFFDAAP 483
Query: 485 MFKNV-------LEGGELMALAFSER------------LKAFRPKQTILEAEGEAARSKH 525
+ + L+ +A SER ++ FRP TI E +
Sbjct: 484 VLEQAAKISGQKLDANSKAEVAESERKLENEKHDILVKMRNFRPSGTIFEL--------N 535
Query: 526 LQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKSMEKEVEPEADSLMAKEIKETHGSKRK 585
S +V VMK KR+ H ++I QQR + +++E + ADS AK I T +
Sbjct: 536 TTQKSVPFV-VMKNKRSHHSEVIEKFRQQRDKEDVDEE-QKIADSQKAKPIT-TADDESI 592
Query: 586 AKTF-----------------------------KDEEYFISSVPTNHHMEAGLSVRSDQG 616
+ TF KDEE ++ + H E GL++ S +
Sbjct: 593 SSTFKKVVAPKKRQNMEALYKEKPKKKKRKLQTKDEENYVPYQSVDKHTEDGLAINSFER 652
Query: 617 FGLNRLEAAVLDLVADDSG----GLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTE 672
N E +V+D A GL+K WD+ KK + + + ++TE
Sbjct: 653 QARN-AEFSVVDRSAAQETKHKPGLKK------WDRIKKKMVSVQD-----PRANKIRTE 700
Query: 673 SGAKVKAT-KTGIYKKWKERSHKKVYLK---GASNEGNAEETTSV---PGGRH------- 718
SGA + A+ KTG Y +WKE+S + L+ S++ N + + V P GRH
Sbjct: 701 SGAWIPASFKTGRYNEWKEKSKIEEQLQRENAGSDDENFKPLSHVQRYPVGRHARHNAKL 760
Query: 719 -----LGGNNRKFR 727
+ GN+++ R
Sbjct: 761 ELKKRISGNDKELR 774
>gi|393217844|gb|EJD03333.1| DEAD-domain-containing protein [Fomitiporia mediterranea MF3/22]
Length = 964
Score = 480 bits (1235), Expect = e-132, Method: Compositional matrix adjust.
Identities = 311/833 (37%), Positives = 461/833 (55%), Gaps = 137/833 (16%)
Query: 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGA--DVVAMARTGSGKTAAFLVP 80
G F+S+ L P + R++ +GYKVPTPIQR ++P +L+ D+V MARTGSGKT A++VP
Sbjct: 97 GSFQSMGLHPPLLRSLTLRGYKVPTPIQRLSIPTLLANPPRDLVGMARTGSGKTLAYMVP 156
Query: 81 MLQRLN-QHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD------------------ 121
+ QRL+ +H G RALIL PTR+LALQ LK KEL R +
Sbjct: 157 LTQRLSGRHATTFGARALILIPTRELALQVLKVGKELVRGWNSTEAGHAGDNTNDDGGDD 216
Query: 122 --------LRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVV 173
LR L+VGG+SM+ QFE + NPD+IIATPGRL+H + E+ ++ L+SV+YVV
Sbjct: 217 GGSTKGQALRWGLVVGGESMDEQFEMITSNPDVIIATPGRLLHLIVEM-NLDLRSVQYVV 275
Query: 174 FDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDT 233
FDEAD LF MGF+ L +IL +L RQTLLFSATLP +L EFAKAGL+DP LVRLD ++
Sbjct: 276 FDEADRLFEMGFSTALDEILHRLPSTRQTLLFSATLPKSLVEFAKAGLQDPKLVRLDAES 335
Query: 234 KISPDLKLAFFTLRQEEKHAALLYMIR-----------EHISSDQ--------------- 267
KIS DL++AFF+++Q EK A LL ++R EH +++
Sbjct: 336 KISSDLRMAFFSVKQAEKDACLLVLLRNIIRVPLGSPAEHDGAEKGKANQKGKGKDSNSR 395
Query: 268 -----QTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
QTLIFV+TKHHVE++N L G S YG +DQ AR + + RFR +T L+V
Sbjct: 396 HAAPHQTLIFVATKHHVEYVNALLTTAGYRVSHIYGQLDQAARTLQMERFRRGETSVLVV 455
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
TDVAARGIDIP+L +V+N+DFP ++FVHRVGR ARAGRTG A+SFVT+ ++ +LLDL
Sbjct: 456 TDVAARGIDIPVLSHVVNFDFPAGARVFVHRVGRTARAGRTGWAWSFVTATELPHLLDLQ 515
Query: 383 LFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIAN----GETIYGRFPQTVIDLVSDRVREI 438
LFL +P+R S +D +I I G FP+T ID ++ +R +
Sbjct: 516 LFLGRPLR----------------STVDTSIVERAYIESLILGAFPRTKIDDETEYIRSL 559
Query: 439 IDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREG------------LHPMF 486
++ L +L+ +Y +++ S+ S +R K++ R G +HP+F
Sbjct: 560 DSGNSSLTTLREVMRRGHGMYERSQAKASQASYKRAKEMMRSGTWGFATTVGETNIHPVF 619
Query: 487 KNV-----LEGGELMALAFSERLKA---FRPKQTILEA--EGEAARSKHLQGPSSQWVDV 536
+ + ++ GE A LKA F P +T+ E G++A + ++ V
Sbjct: 620 RLMQGTGDIQDGEKEEEARRALLKAVNSFSPAETVFEIGNRGKSAGAALMKDRRKALVKA 679
Query: 537 MKKKRAVHEKIINLVHQQRSSKSMEKEVEPEADSLMAKE--IKETHGSKRKAKTFKDEEY 594
++RAVH I + + ++ V P D MA E I+ S K +DEE+
Sbjct: 680 --RERAVHTTSI----VEYEVRETQESVMPAEDIEMADEDDIEAAFASGSKHGKHRDEEF 733
Query: 595 FISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQ----KQVYHWDKRG 650
++ V + E G S++ F + A DL D++G L + WD++
Sbjct: 734 YLPYVQKDAMTEKGYSLKDGASFA-EQASGATFDLTNDEAGTLGTHAGHVRSQLKWDRKK 792
Query: 651 KKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNAEE 709
K++I+ +GE + K+VKTE G ++ T ++G +++W +++H +V G E+
Sbjct: 793 KRFIR-GSGEGAD-NVKIVKTEGGTRLPVTYRSGRFEEWSKKTHVRVPRVG-------EK 843
Query: 710 TTSVPGGRHLGGNNRKFRGGKNQQRSVPNAHVCSEIKDLDQVRKERQKKADRI 762
+ G + GG ++F+ +SV A K L ++ K+ ++KA +I
Sbjct: 844 ESDGAGAKVRGGGGKRFK-----HQSVTPA------KPLHKLNKDYERKARQI 885
>gi|119191696|ref|XP_001246454.1| hypothetical protein CIMG_00225 [Coccidioides immitis RS]
gi|118575169|sp|Q1EB38.1|DBP10_COCIM RecName: Full=ATP-dependent RNA helicase DBP10
gi|392864317|gb|EAS34854.2| ATP-dependent RNA helicase DBP10 [Coccidioides immitis RS]
Length = 927
Score = 479 bits (1234), Expect = e-132, Method: Compositional matrix adjust.
Identities = 259/570 (45%), Positives = 350/570 (61%), Gaps = 65/570 (11%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+++ L+ N+ +AI RKG+ VPTPIQRKT+PL+L DVV MARTGSGKTAAF++P
Sbjct: 79 KGGGFQAMGLNANLLKAITRKGFSVPTPIQRKTIPLVLDDQDVVGMARTGSGKTAAFVIP 138
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M+++L H + G R LILSP+R+LALQTLK KELGR TDL+ LLVGGDS+E QF +
Sbjct: 139 MIEKLKSHSTKVGSRGLILSPSRELALQTLKVVKELGRGTDLKCVLLVGGDSLEEQFGYM 198
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
A NPDIIIATPGR +H E+ ++ L S++YVVFDEAD LF MGFA QL +IL L ++R
Sbjct: 199 AGNPDIIIATPGRFLHLKVEM-NLDLSSIKYVVFDEADRLFEMGFAAQLTEILHGLPQSR 257
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSATLP +L EFA+AGL++P LVRLD ++KISPDL+ FFT++ EK ALL+++
Sbjct: 258 QTLLFSATLPKSLVEFARAGLQEPTLVRLDTESKISPDLQSVFFTVKSAEKEGALLHILH 317
Query: 261 EHIS---------------------------------------SDQQTLIFVSTKHHVEF 281
+ I ++ T+IFV+TKHHV++
Sbjct: 318 DVIKVPTGETEAGKHAREQAISGKSSKKRKRSEQNNPNPQESPTEHSTIIFVATKHHVDY 377
Query: 282 LNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINW 341
+ L RE G S YG +DQ ARKI VS FR + L+VTDVAARGIDIP+L+NVIN+
Sbjct: 378 IASLLRESGFAVSYAYGSLDQTARKIQVSNFRTGISNILVVTDVAARGIDIPILENVINY 437
Query: 342 DFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLD 401
DFP + KIFVHRVGR ARAGR G ++S V D YLLDL LFL + +
Sbjct: 438 DFPSQAKIFVHRVGRTARAGRKGWSYSLVRDADAPYLLDLQLFLGRRL------------ 485
Query: 402 MDGVMSKIDQAIAN--GETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLY 459
VM + Q AN + + G + I + V +++D D+ + + +LY
Sbjct: 486 ---VMGRGQQESANFAEDVVVGGMARESIARSCEWVSKLLDEDIDIQNQREVAMKGEKLY 542
Query: 460 SKTKPLPSKESIRRGKD-LPREG---LHPMFKNVLEGGELMALAFSERLKAFRPKQTILE 515
+T+ S ES +R KD + +G LHP+F N E+ R+ ++P++TI E
Sbjct: 543 IRTRNSASAESAKRAKDVVASDGWTMLHPLFNNEASQMEVEREKMLARIGGYKPQETIFE 602
Query: 516 AEGEAARSKHLQGPSSQWVDVMKKKRAVHE 545
G + + + +D+M+K R+ E
Sbjct: 603 ISGR----RGGKAGDDEAIDMMRKIRSTME 628
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 60/110 (54%), Gaps = 9/110 (8%)
Query: 588 TFKDEEYFISSVPTNHHM--EAGLSVRSDQGFGLNRLEA---AVLDLVADDSG-GLQKQK 641
TF++ EYF+S P H E G V S G N +EA A +DL D++ G + +
Sbjct: 708 TFQNPEYFMSYTPAAHSFAEERGYGVHS--GSNSNFVEASRDATMDLSRDEANRGFAEPR 765
Query: 642 QVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKE 690
+ WDKR KKY+ N E S +VK ESGAK+ A+ ++G + WK+
Sbjct: 766 SIMRWDKRHKKYVSRRNDEDGSKGALLVKGESGAKIAASFRSGRFDAWKK 815
>gi|194747377|ref|XP_001956128.1| GF25051 [Drosophila ananassae]
gi|190623410|gb|EDV38934.1| GF25051 [Drosophila ananassae]
Length = 826
Score = 479 bits (1233), Expect = e-132, Method: Compositional matrix adjust.
Identities = 294/808 (36%), Positives = 441/808 (54%), Gaps = 112/808 (13%)
Query: 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPML 82
GGF+S+ L + + I ++GYKVPTPIQRKT+PLIL G DVVAMA+TGSGKTA FL+P+
Sbjct: 38 GGFQSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLF 97
Query: 83 QRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
++L + P G RALILSPTR+LA+QT KF KELGR+ +L+ L++GGDSM+SQF +
Sbjct: 98 EKLQRREPTKGARALILSPTRELAVQTYKFIKELGRFMELKTILVLGGDSMDSQFSAIHT 157
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
PD+I+ATPGR +H E+ D+ L S+EYVVFDEAD LF MGF EQL++ L +L RQ
Sbjct: 158 CPDVIVATPGRFLHLCVEM-DLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLPSTRQM 216
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
++FSATLP L +FA+AGL DP L+RLDV++K+ L L F R ++++ AL+ +++
Sbjct: 217 VMFSATLPKLLVDFARAGLNDPVLIRLDVESKLPDALALKFLYCRPDDRYTALVVLLKYV 276
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
I + QT++F T+HHVE ++ + G+ + Y +D ARKI+ ++F ++K LIV
Sbjct: 277 IPQESQTVVFAGTQHHVELISYILTGAGISNTSVYSSLDPAARKINTAKFVSKKVSVLIV 336
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
TDVAARGIDIP LD V+N FP KPK+FVHRVGR ARAGRTGTA+S +++D A+LLDLH
Sbjct: 337 TDVAARGIDIPSLDYVVNLHFPGKPKLFVHRVGRCARAGRTGTAYSIFSTDDTAHLLDLH 396
Query: 383 LFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSS 442
LFL++P N T G PQ +++ V E I S
Sbjct: 397 LFLNRPFN-----------------------INDSTAMGTIPQDLLEEEHLTVTE-IKKS 432
Query: 443 ADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVLEGGELM------ 496
+ + RT NA++ Y ++P+ S ++ R K + L P+ ++ ++
Sbjct: 433 HHIAGVLRTSENAYKKYLSSRPVASTDANARVKKIKFFALKPL-EDFFTAAPVLAQAAEV 491
Query: 497 ---------ALAFSER------------LKAFRPKQTILEAEGEAARSKHLQGPSSQWVD 535
A+A +ER ++ FRP T+ E ++ L
Sbjct: 492 NGQTQETQSAVAAAERKLQEEKHDILVKMRNFRPGGTVFELNTTQKSTQFL--------- 542
Query: 536 VMKKKRAVHEKIINLVHQQRS-----------------------------SKSMEKEVEP 566
VMK+KR+ H ++I QQR+ S + K V P
Sbjct: 543 VMKEKRSQHAEVIEKFRQQRAEEDDDEAKKEAEAQQPSSDRMPTADEEAISSTFNKVVAP 602
Query: 567 EADSLMAKEIKETHGSKRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAV 626
+ M KE +++ KD E++I + H E GL++ + + N A
Sbjct: 603 KKRQNMDALYKEKPKKRKRQVNTKDTEHYIPYQSADKHTEDGLAINTFERQAQN----AE 658
Query: 627 LDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIY 685
+V ++ ++ + + WD+ KK + + + ++TESGA + A+ KTG Y
Sbjct: 659 FSVVDRNAAEVKHKPGLKKWDRIKKKMVSVQD-----PRANKIRTESGAWIPASFKTGRY 713
Query: 686 KKWKERSHKKVYLK---GASNEGNAEETTSV---PGGRHLGGNN----RKFRGGKNQQRS 735
+WKE+S + L+ S++ N + + P RH N +K G +++
Sbjct: 714 TEWKEKSKIEDQLQRENAGSDDDNFKPLSHAQRYPVSRHARHNVKLELKKRLSGNDKEMR 773
Query: 736 VPNAHVCSEIKDLDQVRKERQKKADRIA 763
P V S ++ L+ ++K + A+R A
Sbjct: 774 RPEQIVKSRMR-LEFIKKRNEDNAERKA 800
>gi|396463068|ref|XP_003836145.1| similar to ATP-dependent RNA helicase dbp10 [Leptosphaeria maculans
JN3]
gi|312212697|emb|CBX92780.1| similar to ATP-dependent RNA helicase dbp10 [Leptosphaeria maculans
JN3]
Length = 894
Score = 479 bits (1233), Expect = e-132, Method: Compositional matrix adjust.
Identities = 292/740 (39%), Positives = 421/740 (56%), Gaps = 81/740 (10%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+++ L+ + +AI +KG+K+PTPIQRK +PL+L G DVV MARTGSGKTAAF++P
Sbjct: 76 KGGGFQAMGLNALLLKAIAQKGFKIPTPIQRKAVPLMLQGDDVVGMARTGSGKTAAFVIP 135
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M+Q+L H + G R +I+SP+R+LALQTLK KELGR TDLR LLVGGDS+E QF +
Sbjct: 136 MIQKLKAHSAKVGARGIIMSPSRELALQTLKVVKELGRGTDLRTILLVGGDSLEEQFSSM 195
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
NPDIIIATPGR +H E+ + L SV+Y+VFDEAD LF MGFA QL +IL L NR
Sbjct: 196 TTNPDIIIATPGRFLHLKVEM-GLDLSSVKYIVFDEADRLFEMGFAAQLSEILHALPTNR 254
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSATLP +L EFA+AGL++P L+RLD ++KISPDLK A+FT++ ++ ALL+++
Sbjct: 255 QTLLFSATLPKSLVEFARAGLQEPKLIRLDAESKISPDLKSAYFTIKSGDRDGALLHLLD 314
Query: 261 EHIS---------------------------SD---------QQTLIFVSTKHHVEFLNV 284
I SD + T+IF +TKH VE+L
Sbjct: 315 NVIKVPVGETEAAKKARVDSEKATTNKKRKRSDGFVKDAPIAESTIIFAATKHRVEYLAN 374
Query: 285 LFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFP 344
L R G S YG++DQ ARK + FR T L+VTDVAARG+D+P +++VIN+DFP
Sbjct: 375 LLRATGYAVSYVYGNLDQTARKEQIQDFRTGLTRILVVTDVAARGVDMPHINHVINYDFP 434
Query: 345 PKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDG 404
+PKIFVHRVGR ARAGR G A+S D+ YL+DL LFL K + S E D
Sbjct: 435 SQPKIFVHRVGRTARAGRKGWAYSLCRHVDLPYLIDLQLFLGKRLVIGRSIAEPNYAEDF 494
Query: 405 VMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKP 464
V+ T+ ++ +++V+ +++ D DL L R Y +T+
Sbjct: 495 VVG----------TLAPYQLESSVEIVN---KQLTDDE-DLALLLSVAEKGERQYQRTRN 540
Query: 465 LPSKESIRRGKDL---PREG-LHPMFKNVLEGGELMALAFSERLKAFRPKQTILE--AEG 518
S +S++R K+L P H +F + + ER+++FRP +T+ E G
Sbjct: 541 QASAQSVQRAKELVASPNFAETHMLFSDDMHNALREKDKMLERIQSFRPAETVFEIGKRG 600
Query: 519 EAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKS------MEKEVEPEA---- 568
+ + + + V+ K K+A+++ L+ Q+ S +E E EPEA
Sbjct: 601 TGSETAEIMRKRREQVEKQKSKQAMNKAADELLGQEAEPTSVLKDDEIESEDEPEAATGE 660
Query: 569 -----DSLMAKEIKETHGSKRKAKTFKDEEYFISSVPTNHHMEA---GLSVRSDQGFG-- 618
D L + + K +++++ ++F+S P + E G+S D G
Sbjct: 661 YDSDSDDLEI-SVSQPRSKKSTQESWRENDFFMSYTPKENFAEEKAYGVS-GGDAGNSNF 718
Query: 619 LNRLEAAVLDLVADDSGGL-QKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKV 677
++ AA + LV D+ G K WDK+ KKY+ N E S K+++ ESG K+
Sbjct: 719 VSAARAAEMSLVNDEIQGFADAAKSKMRWDKKSKKYVNRTNDEDGSKGAKMIRGESGMKI 778
Query: 678 KAT-KTGIYKKWKERSHKKV 696
A+ ++G + W++ + K+
Sbjct: 779 AASFRSGRFDDWRKANKVKM 798
>gi|195583246|ref|XP_002081434.1| GD25714 [Drosophila simulans]
gi|194193443|gb|EDX07019.1| GD25714 [Drosophila simulans]
Length = 827
Score = 479 bits (1233), Expect = e-132, Method: Compositional matrix adjust.
Identities = 306/830 (36%), Positives = 464/830 (55%), Gaps = 115/830 (13%)
Query: 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPML 82
GGF+S+ L + + I ++GYKVPTPIQRKT+PLIL G DVVAMA+TGSGKTA FL+P+
Sbjct: 39 GGFQSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLF 98
Query: 83 QRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
++L + P G RALILSPTR+LA+QT KF KELGR+ +L+ L++GGDSM+SQF +
Sbjct: 99 EKLQRREPTKGARALILSPTRELAVQTYKFIKELGRFMELKSILVLGGDSMDSQFSAIHT 158
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
PD+I+ATPGR +H E+ D+ L S+EYVVFDEAD LF MGF EQL++ L +L +RQT
Sbjct: 159 CPDVIVATPGRFLHLCVEM-DLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLPSSRQT 217
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
++FSATLP L EFA+AGL DP L+RLDV++K+ L L F R ++++ AL+ +++
Sbjct: 218 VMFSATLPKLLVEFARAGLNDPVLIRLDVESKLPDALALKFLYCRPDDRYTALVVLLKYV 277
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
I + QT++F T+HHVE ++ + E G+ + Y +D ARKI+ ++F +K LIV
Sbjct: 278 IPVESQTVVFAGTQHHVELISYILTEAGISNASVYSSLDPAARKINTAKFVNKKVSVLIV 337
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
TDVAARGIDIP LD V+N FP KPK+FVHRVGR ARAGRTGTA+S V+++D A+LLDLH
Sbjct: 338 TDVAARGIDIPSLDFVVNLHFPGKPKLFVHRVGRCARAGRTGTAYSIVSTDDTAHLLDLH 397
Query: 383 LFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSS 442
LFL++P S + I Q + E + TV D I S
Sbjct: 398 LFLNRPFNIHDS---------SALGTIPQDLLEEEHL------TVTD---------IKKS 433
Query: 443 ADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVLEGGELMA----- 497
+ + RT NA++ Y ++P+ S ++ R K + L P+ ++ ++A
Sbjct: 434 HHIAGVLRTSENAYKKYLSSRPVASTDANARVKKIKFFALKPL-EDFFTAAPVLAQAAEA 492
Query: 498 ----------LAFSER------------LKAFRPKQTILEAEGEAARSKHLQGPSSQWVD 535
++ +ER +++FRP T+ E + S+Q++
Sbjct: 493 SGQSTESQAKVSATERRLQEEKHDILVKMRSFRPGGTVFEL--------NTTQKSTQFI- 543
Query: 536 VMKKKRAVHEKIINLVHQQRSSKSMEKEVE------------PEAD-SLMAKEIKETHGS 582
VMK+KR H ++IN QQR+ + +++E + P AD ++ +
Sbjct: 544 VMKEKRMQHAEVINKFRQQRAEEDIDEEKKTIEASKPSSGRMPTADEEAISSTFNKVVAP 603
Query: 583 KR----------------KAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAV 626
KR + KDE++++ + H E GL++ + + N E +V
Sbjct: 604 KRLQNMDALYKDKPKKKKRKINSKDEDHYVPYQSADKHTEDGLAINNFERQAQN-AEFSV 662
Query: 627 LDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIY 685
D D S ++ + + WD+ KK + + + ++TESGA + A+ KTG Y
Sbjct: 663 SD--RDLSQEVKHKPGLKKWDRIKKKMVSVQD-----PRANKIRTESGAWIPASFKTGRY 715
Query: 686 KKWKERSHKKVYLK---GASNEGNAEETTSV---PGGRHLGGN----NRKFRGGKNQQRS 735
+WKE+S + L+ S++ NA+ + P RH N +K G +++
Sbjct: 716 AEWKEKSKIEDQLQRENAGSDDENAKPLSHAQRYPVSRHARHNLKLELKKRLTGNDKEMR 775
Query: 736 VPNAHVCSEIKDLDQVRKERQKKADRIAFMKG----KTQKGKKFSKNGKR 781
P V S ++ L+ ++K ++ A+R + + KTQ+ K S G +
Sbjct: 776 RPEQIVKSRMR-LEFIKKRNEENAERKSENRKRSMRKTQRPKAQSTGGSK 824
>gi|198462641|ref|XP_001352498.2| GA16838 [Drosophila pseudoobscura pseudoobscura]
gi|198150914|gb|EAL29995.2| GA16838 [Drosophila pseudoobscura pseudoobscura]
Length = 852
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 301/809 (37%), Positives = 445/809 (55%), Gaps = 113/809 (13%)
Query: 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPML 82
GGF+S+ L + + I ++GYKVPTPIQRKT+PLIL G DVVAMA+TGSGKTA FL+P+
Sbjct: 39 GGFQSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLF 98
Query: 83 QRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
++L + P G RALILSPTR+LA+QT KF KELGR+ +L+ L++GGDSM+SQF +
Sbjct: 99 EKLQRRDPTKGARALILSPTRELAVQTYKFIKELGRFMELKTILVLGGDSMDSQFSAIHT 158
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
PD+I+ATPGR +H E+ D+ L S++YVVFDEAD LF MGF EQL++ L +L RQ
Sbjct: 159 CPDVIVATPGRFLHLCVEM-DLKLNSIDYVVFDEADRLFEMGFGEQLNETLHRLPATRQM 217
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
++FSATLP L +FA+AGL DP L+RLDV++K+ L L F R ++++ AL+ +++
Sbjct: 218 VMFSATLPKLLVDFARAGLNDPVLIRLDVESKLPDALALKFLHCRPDDRYTALVVLLKYV 277
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
I + QT++F T+HHVE ++ + E G+ + Y +D ARKI+ ++F +K LIV
Sbjct: 278 IPKESQTVVFAGTQHHVELISFILGEAGISNTSVYSSLDPAARKINTAKFVNKKVSVLIV 337
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
TDVAARGIDIP LD V+N FP KPK+FVHRVGR ARAGRTGTA+S +++D A+LLDLH
Sbjct: 338 TDVAARGIDIPSLDYVVNLHFPGKPKLFVHRVGRCARAGRTGTAYSIFSTDDTAHLLDLH 397
Query: 383 LFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSS 442
LFL++P I + T+ G PQ +++ V E I S
Sbjct: 398 LFLNRPFN----------------------IHDSSTM-GTIPQDLLEEEHLSVNE-IKKS 433
Query: 443 ADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVLEGGELMA----- 497
+ + RT NA++ Y ++P+ S ++ R K + L P+ ++ +A
Sbjct: 434 HHIAGVLRTSENAYKKYLSSRPVASTDANARVKKIKFYALKPL-EDFFTADPALAQAAEV 492
Query: 498 ----------LAFSER------------LKAFRPKQTILEAEGEAARSKHLQGPSSQWVD 535
+A +ER ++ FRP T+ E + S+Q+V
Sbjct: 493 NGQSSESREEVAAAERKLQEDKHDILVKMRNFRPCGTVFEL--------NCTQKSTQFV- 543
Query: 536 VMKKKRAVHEKIINLVHQQRS-----------------------------SKSMEKEVEP 566
VMK KR+ H ++I QQR+ S + K V P
Sbjct: 544 VMKTKRSEHAEVIKKFRQQRADEDVDEAQRDAEIQEPSTARMDTADEEAISSTFNKVVAP 603
Query: 567 EADSLMAKEIKETHGSKRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAV 626
+ M KE K+++ KD E+++ + H E GL++ + + N A
Sbjct: 604 KRRLHMDDLYKEKPKRKKRSANTKDAEHYVPYQSADKHTEDGLAINTFERQAQN----AE 659
Query: 627 LDLVADDSGGLQKQKQ-VYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGI 684
+V +S K K + WD+ KK + + + ++TESGA + A+ KTG
Sbjct: 660 FSVVDRNSAQDAKHKPGLKKWDRIKKKMVSVQD-----PRANKIRTESGAWIPASFKTGR 714
Query: 685 YKKWKERS--HKKVYLKGASNEGNAEETTS----VPGGRHLGGNN----RKFRGGKNQQR 734
Y WKE+S ++V + A N+ + + S P RH N +K GG +++
Sbjct: 715 YTDWKEKSKIEEQVERETAGNDEESRKPLSHAQRYPVSRHARHNVKVELKKRMGGPDKEL 774
Query: 735 SVPNAHVCSEIKDLDQVRKERQKKADRIA 763
P V S ++ L+ ++K + A+R A
Sbjct: 775 RRPEQIVKSRMR-LEFIKKRNEDNAERKA 802
>gi|28575014|ref|NP_612028.4| CG32344 [Drosophila melanogaster]
gi|18447311|gb|AAL68229.1| LD28101p [Drosophila melanogaster]
gi|23092697|gb|AAN11439.1| CG32344 [Drosophila melanogaster]
gi|220947558|gb|ACL86322.1| CG32344-PA [synthetic construct]
Length = 827
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 306/830 (36%), Positives = 463/830 (55%), Gaps = 115/830 (13%)
Query: 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPML 82
GGF+S+ L + + I ++GYKVPTPIQRKT+PLIL G DVVAMA+TGSGKTA FL+P+
Sbjct: 39 GGFQSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLF 98
Query: 83 QRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
++L + P G RALILSPTR+LA+QT KF KELGR+ +L+ L++GGDSM+SQF +
Sbjct: 99 EKLQRREPTKGARALILSPTRELAVQTYKFIKELGRFMELKSILVLGGDSMDSQFSAIHT 158
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
PD+I+ATPGR +H E+ D+ L S+EYVVFDEAD LF MGF EQL++ L +L +RQT
Sbjct: 159 CPDVIVATPGRFLHLCVEM-DLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLPSSRQT 217
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
++FSATLP L EFA+AGL DP L+RLDV++K+ L L F R ++++ AL+ +++
Sbjct: 218 VMFSATLPKLLVEFARAGLNDPVLIRLDVESKLPDALALKFLYCRPDDRYTALVVLLKYV 277
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
I QT++F T+HHVE ++ + E G+ + Y +D ARKI+ ++F +K LIV
Sbjct: 278 IPVQSQTVVFAGTQHHVELISYILTEAGISNASVYSSLDPAARKINTAKFVNKKVSVLIV 337
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
TDVAARGIDIP LD V+N FP KPK+FVHRVGR ARAGRTGTA+S V+++D A+LLDLH
Sbjct: 338 TDVAARGIDIPSLDFVVNLHFPGKPKLFVHRVGRCARAGRTGTAYSIVSTDDTAHLLDLH 397
Query: 383 LFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSS 442
LFL++P S + I Q + E + TV D I S
Sbjct: 398 LFLNRPFNIHDS---------SALGTIPQDLLEEEHL------TVTD---------IKKS 433
Query: 443 ADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVLEGGELMA----- 497
+ + RT NA++ Y ++P+ S ++ R K + L P+ ++ ++A
Sbjct: 434 HHIAGVLRTSENAYKKYLSSRPVASTDANARVKKIKFFALKPL-EDFFTAAPVLAQAAEA 492
Query: 498 ----------LAFSER------------LKAFRPKQTILEAEGEAARSKHLQGPSSQWVD 535
++ +ER +++FRP T+ E + S+Q++
Sbjct: 493 SGQSTESQAKVSAAERKLQEEKHDILVKMRSFRPGGTVFEL--------NTTQKSTQFI- 543
Query: 536 VMKKKRAVHEKIINLVHQQRSSKSMEKEVE------------PEAD-SLMAKEIKETHGS 582
VMK+KR H ++IN QQR+ + +++E + P AD ++ +
Sbjct: 544 VMKEKRMQHAEVINKFRQQRAEEDIDEEKKTIEALNPSSGRMPTADEEAISSTFNKVVAP 603
Query: 583 KR----------------KAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAV 626
KR + KDE++++ + H E GL++ + + N E +V
Sbjct: 604 KRLQNMDALYKDKPKKKKRKINSKDEDHYVPYQSADKHTEDGLAINNFERQAQN-AEFSV 662
Query: 627 LDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIY 685
D D S ++ + + WD+ KK + + + ++TESGA + A+ KTG Y
Sbjct: 663 SD--RDLSQEVKHKPGLKKWDRIKKKMVSVQD-----PRANKIRTESGAWIPASFKTGRY 715
Query: 686 KKWKERSHKKVYLK---GASNEGNAEETTSV---PGGRHLGGN----NRKFRGGKNQQRS 735
+WKE+S + L+ S++ NA+ + P RH N +K G +++
Sbjct: 716 AEWKEKSKIEDQLQRENAGSDDENAKPLSHAQRYPVSRHARHNLKLELKKRLTGNDKEMR 775
Query: 736 VPNAHVCSEIKDLDQVRKERQKKADRIAFMKG----KTQKGKKFSKNGKR 781
P V S ++ L+ ++K ++ A+R + + KTQ+ K S G +
Sbjct: 776 RPEQIVKSRMR-LEFIKKRNEENAERKSENRKRSMRKTQRPKAQSTGGSK 824
>gi|393245270|gb|EJD52781.1| DEAD-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 927
Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust.
Identities = 312/852 (36%), Positives = 472/852 (55%), Gaps = 130/852 (15%)
Query: 4 VSSKAELKRREKQKKKSK-------SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPL 56
V E+ ++ K K KS G F+S+ L P++ RA+ +GY+ PTPIQR T+P
Sbjct: 70 VKDGVEIMKQAKGKGKSHVKKGEVGGGSFQSMGLHPSLLRALTLRGYRTPTPIQRLTIPA 129
Query: 57 ILSGA--DVVAMARTGSGKTAAFLVPMLQRLNQ-HVPQGGVRALILSPTRDLALQTLKFT 113
+L+ D+V MARTGSGKT A+++P++QRL H G RALIL PTR+LALQ LK
Sbjct: 130 LLATPPRDLVGMARTGSGKTLAYMIPLVQRLGGLHSTTFGARALILIPTRELALQVLKVG 189
Query: 114 KEL------------------------GRYTDLRISLLVGGDSMESQFEELAQNPDIIIA 149
KEL G+ + LR L+VGG+ M+ QFE L NPD+IIA
Sbjct: 190 KELARGFNAAATGGDHAGDAESLTPENGKGSALRWGLVVGGEGMDDQFEMLTSNPDVIIA 249
Query: 150 TPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATL 209
TPGRL+H E+ ++ L+S++YVVFDEAD LF MGF+ + +ILG+L +RQTLLFSATL
Sbjct: 250 TPGRLLHVAVEM-NLDLRSIQYVVFDEADRLFEMGFSVAMTEILGRLPTSRQTLLFSATL 308
Query: 210 PSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS----- 264
P +L EFAKAGL++P LVRLD ++KIS DL++AFF+++Q EK AALL ++R+ I
Sbjct: 309 PKSLVEFAKAGLQNPKLVRLDAESKISSDLRMAFFSVKQGEKDAALLVLLRDVIHVPLGA 368
Query: 265 ------------SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
+ QT++FV+TKHHVE+++ L G S YG +DQ AR + RF
Sbjct: 369 SEGRAKGQPFQMAPHQTIVFVATKHHVEYISNLLTTAGYAVSHIYGALDQAARGQQMDRF 428
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
R T L+VTDVAARGIDIP+L+NV+N+DFP ++FVHRVGR ARAGR G A+SFVT+
Sbjct: 429 RKGITSVLVVTDVAARGIDIPVLENVVNYDFPSGSRVFVHRVGRTARAGRKGWAWSFVTN 488
Query: 373 EDMAYLLDLHLFLSKPIR--AAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDL 430
++ YLLDL LFL++P+ A P E+ + ++ + G F + ID
Sbjct: 489 PELPYLLDLQLFLARPLLPVAGPGEQAYVENL----------------VLGPFAREDIDQ 532
Query: 431 VSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVL 490
+ VR + +++ L +L+ R+Y +++ S+ S +R K++ ++ P+ +
Sbjct: 533 EVEFVRTLDETNTALPTLRDVMAKGQRMYERSQGKASQASYKRAKEMSKDPTWPLAGSTA 592
Query: 491 EGGELMALAFSER-------------LKAFRPKQTILE--AEGEAARSKHLQGPSSQWVD 535
E + + R + +F+P +T+ E + G+A S
Sbjct: 593 EQSRAHPILAASRTDDDVKKAALLAAVGSFKPAETVFELGSRGKAGASA----------- 641
Query: 536 VMKKKR-----AVHEK-IINLVHQQRSSKSMEKEVEPEADSLMAKEIKETHGSKRKA--- 586
+MK +R A H +++ + S S D+ +I+ GS++KA
Sbjct: 642 LMKDRRKALAKAAHRTPVVSAIASTSSIPSTSAVTLSAEDAADEDDIQAVFGSQKKARLT 701
Query: 587 KTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQ-KQVYH 645
K FKD E+++S + E G S+R F + + A DLV D+ G QK+ +
Sbjct: 702 KDFKDSEFYMSYAQKDSATEKGYSLRDGASF-TEQAQNATFDLVTDEGGKEQKRLRSQLK 760
Query: 646 WDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNE 704
WD++ KK++K +GE + K++KTESG ++ AT +TG +++WK+ + + G
Sbjct: 761 WDRKKKKFVK-GSGEGAD-NVKIIKTESGTRLPATYRTGRFEEWKKATRTALPRVG---- 814
Query: 705 GNAEETTSVPGGRHLGGNNRKFRGGKNQQRSVPNAHVCSEIKDLDQVRKERQKKADRIAF 764
+E PG G R F+ + +P+ K LD++ K+ ++K+ +IA
Sbjct: 815 --EQENKDSPGAGARGFGKR-FK----HTKIMPS-------KPLDRLSKDFERKSRKIAK 860
Query: 765 MKGK--TQKGKK 774
G ++GKK
Sbjct: 861 RDGDGGAEEGKK 872
>gi|195336302|ref|XP_002034780.1| GM14284 [Drosophila sechellia]
gi|194127873|gb|EDW49916.1| GM14284 [Drosophila sechellia]
Length = 827
Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust.
Identities = 306/833 (36%), Positives = 463/833 (55%), Gaps = 121/833 (14%)
Query: 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPML 82
GGF+S+ L + + I ++GYKVPTPIQRKT+PLIL G DVVAMA+TGSGKTA FL+P+
Sbjct: 39 GGFQSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLF 98
Query: 83 QRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
++L + P G RALILSPTR+LA+QT KF KELGR+ +L+ L++GGDSM+SQF +
Sbjct: 99 EKLQRREPTKGARALILSPTRELAVQTYKFIKELGRFMELKSILVLGGDSMDSQFSAIHT 158
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
PD+I+ATPGR +H E+ D+ L S+EYVVFDEAD LF MGF EQL++ L +L +RQT
Sbjct: 159 CPDVIVATPGRFLHLCVEM-DLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLPSSRQT 217
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
++FSATLP L EFA+AGL DP L+RLDV++K+ L L F R ++++ AL+ +++
Sbjct: 218 VMFSATLPKLLVEFARAGLNDPVLIRLDVESKLPDALALKFLYCRPDDRYTALVVLLKYV 277
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
I + QT++F T+HHVE ++ + E G+ + Y +D ARKI+ ++F +K LIV
Sbjct: 278 IPVESQTVVFAGTQHHVELISYILTEAGISNASVYSSLDPAARKINTAKFVNKKVSVLIV 337
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
TDVAARGIDIP LD V+N FP KPK+FVHRVGR ARAGRTGTA+S V+++D A+LLDLH
Sbjct: 338 TDVAARGIDIPSLDFVVNLHFPGKPKLFVHRVGRCARAGRTGTAYSIVSTDDTAHLLDLH 397
Query: 383 LFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSS 442
LFL++P S + I Q + E + TV D I +S
Sbjct: 398 LFLNRPFNIHDS---------SALGTIPQDLLEEEHL------TVTD---------IKNS 433
Query: 443 ADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVLEGGELMA----- 497
+ + RT NA++ Y ++P+ S ++ R K + L P+ ++ ++A
Sbjct: 434 HHIAGVLRTSENAYKKYLSSRPVASTDANARVKKIKFFALKPL-EDFFTAAPVLAQAAEA 492
Query: 498 ----------LAFSER------------LKAFRPKQTILEAEGEAARSKHLQGPSSQWVD 535
++ +ER +++FRP T+ E + S+Q++
Sbjct: 493 SGQSTESQAKVSATERKLQEEKHDILVKMRSFRPGGTVFEL--------NTTQKSTQFI- 543
Query: 536 VMKKKRAVHEKIINLVHQQRSSKSMEKEVE------------PEADSLMAKEIKETHGSK 583
VMK+KR H ++IN QQR+ + +++E + P AD + I T
Sbjct: 544 VMKEKRMQHAEVINKFRQQRAEEDIDEEKKTTEASKPSSCRMPTADE---EAISSTFNKV 600
Query: 584 RKAKTFKD--------------------EEYFISSVPTNHHMEAGLSVRSDQGFGLNRLE 623
K +D E++++ + H E GL++ + + N E
Sbjct: 601 VAPKRLQDMDALYKDKPKKKKRKINNKDEDHYVPYQSADKHTEDGLAINNFERQAQN-AE 659
Query: 624 AAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KT 682
+V D D S ++ + + WD+ KK + + + ++TESGA + A+ KT
Sbjct: 660 FSVSD--RDLSQEVKHKPGLKKWDRIKKKMVSVQD-----PRANKIRTESGAWIPASFKT 712
Query: 683 GIYKKWKERSHKKVYLK---GASNEGNAEETTSV---PGGRHLGGN----NRKFRGGKNQ 732
G Y +WKE+S + L+ S++ NA+ + P RH N +K G ++
Sbjct: 713 GRYAEWKEKSKIEDQLQRENAGSDDENAKPLSHAQRYPVSRHARHNLKLELKKRLTGNDK 772
Query: 733 QRSVPNAHVCSEIKDLDQVRKERQKKADRIAFMKG----KTQKGKKFSKNGKR 781
+ P V S ++ L+ ++K ++ A+R + + KTQ+ K S G +
Sbjct: 773 EMRRPEQIVKSRMR-LEFIKKRNEENAERKSENRKRSMRKTQRPKTQSTGGSK 824
>gi|451999037|gb|EMD91500.1| hypothetical protein COCHEDRAFT_1136109 [Cochliobolus
heterostrophus C5]
Length = 891
Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust.
Identities = 304/834 (36%), Positives = 436/834 (52%), Gaps = 133/834 (15%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+++ L+ + +AI +KG+KVPTPIQRK +PL+L G DVV MARTGSGKTAAF++P
Sbjct: 75 KGGGFQAMGLNAALLKAITQKGFKVPTPIQRKAVPLMLQGEDVVGMARTGSGKTAAFVIP 134
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M+Q+L H + G R +I+SP+R+LALQTLK KELGR TDLR LLVGGDS+E QF +
Sbjct: 135 MIQKLKAHSAKVGARGIIMSPSRELALQTLKVVKELGRGTDLRTILLVGGDSLEEQFSSM 194
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
NPDIIIATPGR +H E+ + L SV+Y+VFDEAD LF MGFA QL +IL L +R
Sbjct: 195 TTNPDIIIATPGRFLHLKVEM-GLDLSSVKYIVFDEADRLFEMGFAAQLSEILYALPASR 253
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI- 259
QTLLFSATLP +L EFA+AGL++P L+RLD ++KISPDLK A+FT++ ++ ALLY++
Sbjct: 254 QTLLFSATLPKSLVEFARAGLQEPKLIRLDAESKISPDLKSAYFTIKSGDRDGALLYLLD 313
Query: 260 ----------------REH-----------------ISSDQQTLIFVSTKHHVEFLNVLF 286
RE + + T+IF +TKH VE+L L
Sbjct: 314 NVIKVPVGETDAAKKAREESEKPTKKRKRSEGFVKDLPVAESTIIFAATKHRVEYLANLL 373
Query: 287 REEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPK 346
R G S YG++DQ ARK + FR T LIVTDVAARG+D+P +++VIN+DFP +
Sbjct: 374 RNLGYAISYVYGNLDQTARKEQIQDFRTGLTRILIVTDVAARGVDMPHINHVINYDFPSQ 433
Query: 347 PKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVM 406
PKIFVHRVGR ARAGR G A+S D+ YL+DL LFL K + S +E D V+
Sbjct: 434 PKIFVHRVGRTARAGRKGWAYSLCRHVDLPYLIDLQLFLGKRLLLGRSSDEPNYADDFVV 493
Query: 407 SKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLP 466
G ++ ++V + DL L R Y +T+
Sbjct: 494 --------------GSLSPWQVESSVEQVNRQLSEDEDLALLLSVAEKGERQYQRTRNQA 539
Query: 467 SKESIRRGKDLPRE----GLHPMFKNVLEGGELMALAFSERLKAFRPKQTILEAEGEAAR 522
S +S+ R K+L H +F N + R+++FRP +T+ E
Sbjct: 540 SAQSVVRAKELAASPNFAETHMLFSNDAHTAQREKEDMLARIQSFRPAETVFEI------ 593
Query: 523 SKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKSMEKEVEPEADSLMA--------- 573
+G S+ ++M+K+R V +Q++ ++ K+ E E D++ A
Sbjct: 594 --GKRGIHSETAEIMRKRR-------EQVERQKAKQAANKKGEDELDTIHASSREANDED 644
Query: 574 ----KEIKETHG------------------SKRKAKTFKDEEYFISSVP-TNHHMEAGLS 610
E++ G K K +++++++F+S P N E
Sbjct: 645 MSSGNEVEVAEGVYASDSDELEVSVSQPAAKKSKQDSWRNDDFFMSYTPKENLAEEKAYG 704
Query: 611 VRSDQGFGLNRLE---AAVLDLVADDSGGLQKQ-KQVYHWDKRGKKYIKLNNGERVSASG 666
V N + AA + LV D+ G K WDK+ KKY+ N + S
Sbjct: 705 VSGGDAGNTNFVSAARAAEMSLVNDEIQGFADAVKSKMRWDKKSKKYVNRTNDDDGSKGA 764
Query: 667 KVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGN--AEETTSVPGGRHLGGNN 723
K+++ ESG K+ A+ ++G + W++ + K+ G N A + P +H
Sbjct: 765 KMIRGESGQKIAASFRSGRFDDWRKANKVKMPRVGEMESANRPAASFNNAPRYKH----- 819
Query: 724 RKFRGGKNQQRSVPNAHVC---------------------SEIKDLDQVRKERQ 756
+ + K R + HV +E++D+D VRK R+
Sbjct: 820 KSEKAPKQADRYRDDYHVQKKRVAEAQEKRIGAFKDGKGKNELRDVDAVRKNRK 873
>gi|195170534|ref|XP_002026067.1| GL16100 [Drosophila persimilis]
gi|194110947|gb|EDW32990.1| GL16100 [Drosophila persimilis]
Length = 854
Score = 477 bits (1228), Expect = e-131, Method: Compositional matrix adjust.
Identities = 301/808 (37%), Positives = 443/808 (54%), Gaps = 111/808 (13%)
Query: 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPML 82
GGF+S+ L + + I ++GYKVPTPIQRKT+PLIL G DVVAMA+TGSGKTA FL+P+
Sbjct: 39 GGFQSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLF 98
Query: 83 QRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
++L + P G RALILSPTR+LA+QT KF KELGR+ +L+ L++GGDSM+SQF +
Sbjct: 99 EKLQRRDPTKGARALILSPTRELAVQTYKFIKELGRFMELKTILVLGGDSMDSQFSAIHT 158
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
PD+I+ATPGR +H E+ D+ L S++YVVFDEAD LF MGF EQL++ L +L RQ
Sbjct: 159 CPDVIVATPGRFLHLCVEM-DLKLNSIDYVVFDEADRLFEMGFGEQLNETLHRLPATRQM 217
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
++FSATLP L +FA+AGL DP L+RLDV++K+ L L F R ++++ AL+ +++
Sbjct: 218 VMFSATLPKLLVDFARAGLNDPVLIRLDVESKLPDALALKFLHCRPDDRYTALVVLLKYV 277
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
I + QT++F T+HHVE ++ + E G+ + Y +D ARKI+ ++F +K LIV
Sbjct: 278 IPKESQTVVFAGTQHHVELISFILGEAGISNTSVYSSLDPAARKINTAKFVNKKVSVLIV 337
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
TDVAARGIDIP LD V+N FP KPK+FVHRVGR ARAGRTGTA+S +++D A+LLDLH
Sbjct: 338 TDVAARGIDIPSLDYVVNLHFPGKPKLFVHRVGRCARAGRTGTAYSIFSTDDTAHLLDLH 397
Query: 383 LFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSS 442
LFL++P I + T+ G PQ +++ V E I S
Sbjct: 398 LFLNRPFN----------------------IHDSSTM-GTIPQDLLEEEHLSVNE-IKKS 433
Query: 443 ADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFK--------------N 488
+ + RT NA++ Y ++P+ S ++ R K + L P+ N
Sbjct: 434 HHIAGVLRTSENAYKKYLSSRPVASTDANARVKKIKFYALKPLEDFFTAAPALAQAAEVN 493
Query: 489 VLEGGELMALAFSER------------LKAFRPKQTILEAEGEAARSKHLQGPSSQWVDV 536
+A +ER ++ FRP T+ E + S+Q+V V
Sbjct: 494 GQSSESREEVAAAERKLQEDKHDILVKMRNFRPCGTVFEL--------NCTQKSTQFV-V 544
Query: 537 MKKKRAVHEKIINLVHQQRS-----------------------------SKSMEKEVEPE 567
MK KR+ H ++I QQR+ S + K V P+
Sbjct: 545 MKTKRSEHAEVIKKFRQQRADEDVDEAQRDAEIQEPSTARMDTADEEAISSTFNKVVAPK 604
Query: 568 ADSLMAKEIKETHGSKRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVL 627
M KE K+++ KD E+++ + H E GL++ + + N A
Sbjct: 605 RRLHMDDLYKEKPKRKKRSANTKDAEHYVPYQSADKHTEDGLAINTFERQAQN----AEF 660
Query: 628 DLVADDSGGLQKQKQ-VYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIY 685
+V +S K K + WD+ KK + + + ++TESGA + A+ KTG Y
Sbjct: 661 SVVDRNSAQDAKHKPGLKKWDRIKKKMVSVQD-----PRANKIRTESGAWIPASFKTGRY 715
Query: 686 KKWKERS--HKKVYLKGASNEGNAEETTS----VPGGRHLGGNN----RKFRGGKNQQRS 735
WKE+S ++V + A N+ ++ + S P RH N +K GG +++
Sbjct: 716 TDWKEKSKIEEQVERETAGNDEDSRKPLSHAQRYPVSRHARHNVKVELKKRMGGPDKELR 775
Query: 736 VPNAHVCSEIKDLDQVRKERQKKADRIA 763
P V S ++ L+ ++K + A+R A
Sbjct: 776 RPEQIVKSRMR-LELIKKRNEDNAERKA 802
>gi|189189808|ref|XP_001931243.1| ATP-dependent RNA helicase DBP10 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187972849|gb|EDU40348.1| ATP-dependent RNA helicase DBP10 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 892
Score = 477 bits (1227), Expect = e-131, Method: Compositional matrix adjust.
Identities = 310/834 (37%), Positives = 455/834 (54%), Gaps = 95/834 (11%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+++ L+ + +AI +KG+K+PTPIQRK +PL+L G DVV MARTGSGKTAAF++P
Sbjct: 75 KGGGFQAMGLNAALLKAIAQKGFKIPTPIQRKAVPLMLQGEDVVGMARTGSGKTAAFVIP 134
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M+Q+L H + G R +I+SP+R+LALQTLK KELGR TDLR LLVGGDS+E QF +
Sbjct: 135 MIQKLKAHSAKVGARGIIMSPSRELALQTLKVVKELGRGTDLRTILLVGGDSLEEQFSSM 194
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
NPDIIIATPGR +H E+ + L SV Y+VFDEAD LF MGFA QL +IL L +R
Sbjct: 195 TTNPDIIIATPGRFLHLKVEM-GLDLSSVRYIVFDEADRLFEMGFAAQLSEILHALPASR 253
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSATLP +L EFA+AGL++P L+RLD ++KISPDLK A+FT++ ++ ALL+++
Sbjct: 254 QTLLFSATLPKSLVEFARAGLQEPKLIRLDAESKISPDLKSAYFTIKSGDRDGALLHLLD 313
Query: 261 EHI-----SSD-------------------------------QQTLIFVSTKHHVEFLNV 284
I +D + T+IF +TKH VE+L+
Sbjct: 314 NVIKVPVGETDASKKAKEDAEKASNSKKRKRSEGFVKDVPVAESTIIFAATKHRVEYLSN 373
Query: 285 LFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFP 344
L R G S YG++DQ ARK + FR T L+VTDVAARG+D+P +++VIN+DFP
Sbjct: 374 LLRNAGYAVSYVYGNLDQTARKEQIQDFRTGLTRILVVTDVAARGVDMPHINHVINYDFP 433
Query: 345 PKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDG 404
+PKIFVHRVGR ARAGR G A+S D+ YL+DL LFL K + S EE D
Sbjct: 434 SQPKIFVHRVGRTARAGRKGWAYSLCRHVDLPYLIDLQLFLGKRLLVGRSSEEPNYAEDF 493
Query: 405 VMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKP 464
V+ ++A + ++ ++LV+ ++ E DL L R Y +T+
Sbjct: 494 VVG----SLAPWQL------ESSVELVNKQLAE----DEDLALLLSVAEKGERQYQRTRN 539
Query: 465 LPSKESIRRGKDL---PREG-LHPMFKNVLEGGELMALAFSERLKAFRPKQTILEA--EG 518
S +S+ R K+L P H +F + + R+++FRP +T+ E G
Sbjct: 540 QASAQSVGRAKELVASPNFAETHMLFSDDAHQAQREKENMLARIQSFRPAETVFEIGRRG 599
Query: 519 EAARSKHLQGPSSQWVDVMKKKRAVH---EKIINLVHQ--QRSSKSMEKEVEPE-ADSLM 572
+ + + + V K K+A + E ++ + + ++S+ +E + E E A+ +
Sbjct: 600 TGSETAEIMRKRREQVGRQKAKQAANKMAEGSLDAIDEPSRKSNDGVESDDEVEVANGIY 659
Query: 573 AKEIKETHGS-------KRKAKTFKDEEYFISSVP-TNHHMEAGLSVRSDQGFGLNRLE- 623
+ E S K K ++++++YF+S +P N E V N +
Sbjct: 660 ESDSDELEVSVSQPTSKKSKQDSWRNDDYFMSYLPKENMAEEKAYGVSGGDAGNTNFVSA 719
Query: 624 --AAVLDLVADDSGGL-QKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT 680
AA + LV D+ G K WDK+ KKY+ N E S K+++ ESG K+ A+
Sbjct: 720 ARAAEMSLVNDEIQGFADAAKSKMRWDKKSKKYVNRTNDEDGSKGTKMIRGESGQKIAAS 779
Query: 681 -KTGIYKKWKERSHKKVYLKGASNEGN--AEETTSVPGGRHLGGNNRK----FRGGKNQQ 733
++G + W++ + K+ G N A + P +H K +R + Q
Sbjct: 780 FRSGRFDDWRKANKVKMPRVGEMEAPNRSAASFNNAPRYKHKAEKAPKQADRYRDDYHVQ 839
Query: 734 R------------SVPNAHVCSEIKDLDQVRKERQKKADRIAFMKGKTQKGKKF 775
+ + + +E++D+D VRK R+ K R A + K +KF
Sbjct: 840 KKRVAEAKEKRIGAFKDGGAKNELRDVDAVRKNRRVKEQRQA-KNARPSKKRKF 892
>gi|320036334|gb|EFW18273.1| ATP-dependent RNA helicase DBP10 [Coccidioides posadasii str.
Silveira]
Length = 927
Score = 476 bits (1226), Expect = e-131, Method: Compositional matrix adjust.
Identities = 258/570 (45%), Positives = 350/570 (61%), Gaps = 65/570 (11%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+++ L+ N+ +AI RKG+ VPTPIQRKT+PL+L DVV MARTGSGKTAAF++P
Sbjct: 79 KGGGFQAMGLNANLLKAITRKGFSVPTPIQRKTIPLVLDDQDVVGMARTGSGKTAAFVIP 138
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M+++L H + G R LILSP+R+LALQTLK KELGR TDL+ LLVGGDS+E QF +
Sbjct: 139 MIEKLKSHSTKVGSRGLILSPSRELALQTLKVVKELGRGTDLKCVLLVGGDSLEEQFGYM 198
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
A NPDIIIATPGR +H E+ ++ L S++YVVFDEAD LF MGFA QL +IL L ++R
Sbjct: 199 AGNPDIIIATPGRFLHLKVEM-NLDLSSIKYVVFDEADRLFEMGFAAQLTEILHGLPQSR 257
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSATLP +L EFA+AGL++P LVRLD ++KISPDL+ FFT++ EK ALL+++
Sbjct: 258 QTLLFSATLPKSLVEFARAGLQEPTLVRLDTESKISPDLQSVFFTVKSAEKEGALLHILH 317
Query: 261 EHIS---------------------------------------SDQQTLIFVSTKHHVEF 281
+ I ++ T+IFV+TKHHV++
Sbjct: 318 DVIKVPTGETEAGKRAKELAISGKSSKKRKRSEQNNPNPQESPTEHSTIIFVATKHHVDY 377
Query: 282 LNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINW 341
+ L RE G S YG +DQ ARKI VS FR + L+VTDVAARGIDIP+L+NVIN+
Sbjct: 378 VASLLRESGFAVSYAYGSLDQTARKIQVSNFRTGISNILVVTDVAARGIDIPILENVINY 437
Query: 342 DFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLD 401
DFP + KIFVHRVGR ARAGR G ++S V D YLLDL LFL + +
Sbjct: 438 DFPSQAKIFVHRVGRTARAGRKGWSYSLVRDADAPYLLDLQLFLGRRL------------ 485
Query: 402 MDGVMSKIDQAIAN--GETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLY 459
VM + Q AN + + G + I + V +++D D+ + + +LY
Sbjct: 486 ---VMGRGQQESANFAEDVVVGGMARESIARNCEWVSKLLDEDIDIQNQREVVMKGEKLY 542
Query: 460 SKTKPLPSKESIRRGKD-LPREG---LHPMFKNVLEGGELMALAFSERLKAFRPKQTILE 515
+T+ S ES +R KD + +G LHP+F + E+ R+ ++P++TI E
Sbjct: 543 IRTRNSASAESAKRAKDVVASDGWTMLHPLFNDEASQMEVEREQMLARIGGYKPQETIFE 602
Query: 516 AEGEAARSKHLQGPSSQWVDVMKKKRAVHE 545
G + + + +D+M+K R+ E
Sbjct: 603 ISGR----RGGKAGDDEALDMMRKIRSTME 628
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 60/110 (54%), Gaps = 9/110 (8%)
Query: 588 TFKDEEYFISSVPTNHHM--EAGLSVRSDQGFGLNRLEA---AVLDLVADDSG-GLQKQK 641
TF++ EYF+S P H E G V S G N +EA A +DL D++ G + +
Sbjct: 708 TFQNPEYFMSYTPAAHSFAEERGYGVHS--GSNSNFVEASRDATMDLSRDEANRGFAEPR 765
Query: 642 QVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKE 690
+ WDKR KKY+ N E S +VK ESGAK+ A+ ++G + WK+
Sbjct: 766 SIMRWDKRHKKYVSRRNDEDGSKGALLVKGESGAKIAASFRSGRFDAWKK 815
>gi|330947853|ref|XP_003306985.1| hypothetical protein PTT_20304 [Pyrenophora teres f. teres 0-1]
gi|311315219|gb|EFQ84923.1| hypothetical protein PTT_20304 [Pyrenophora teres f. teres 0-1]
Length = 893
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 310/836 (37%), Positives = 452/836 (54%), Gaps = 98/836 (11%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+++ L+ + +AI +KG+K+PTPIQRK +PL+L G DVV MARTGSGKTAAF++P
Sbjct: 75 KGGGFQAMGLNAALLKAIAQKGFKIPTPIQRKAVPLMLQGEDVVGMARTGSGKTAAFVIP 134
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M+Q+L H + G R +I+SP+R+LALQTLK KELGR TDLR LLVGGDS+E QF +
Sbjct: 135 MIQKLKAHSAKVGARGIIMSPSRELALQTLKVVKELGRGTDLRTILLVGGDSLEEQFSSM 194
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
NPDIIIATPGR +H E+ + L SV Y+VFDEAD LF MGFA QL +IL L +R
Sbjct: 195 TTNPDIIIATPGRFLHLKVEM-GLDLSSVRYIVFDEADRLFEMGFAAQLSEILHALPASR 253
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSATLP +L EFA+AGL++P L+RLD ++KISPDLK A+FT++ ++ ALL+++
Sbjct: 254 QTLLFSATLPKSLVEFARAGLQEPKLIRLDAESKISPDLKSAYFTIKSGDRDGALLHLLD 313
Query: 261 EHI-----SSD-------------------------------QQTLIFVSTKHHVEFLNV 284
I +D + T+IF +TKH VE+L+
Sbjct: 314 NVIKVPVGETDASKKAKEDAEKASNSKKRKRSEGFVKDVPIAESTIIFAATKHRVEYLSN 373
Query: 285 LFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFP 344
L R G S YG++DQ ARK + FR T L+VTDVAARG+D+P +++VIN+DFP
Sbjct: 374 LLRNAGYAVSYVYGNLDQTARKEQIQDFRTGLTRILVVTDVAARGVDMPHINHVINYDFP 433
Query: 345 PKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDG 404
+PKIFVHRVGR ARAGR G A+S D+ YL+DL LFL K + S EE D
Sbjct: 434 SQPKIFVHRVGRTARAGRKGWAYSLCRHVDLPYLIDLQLFLGKRLLVGRSSEEPNYAEDF 493
Query: 405 VMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKP 464
V+ ++A + ++ ++LV+ ++ E DL L R Y +T+
Sbjct: 494 VVG----SLAPWQL------ESSVELVNKQLAE----DEDLALLLSVAEKGERQYQRTRN 539
Query: 465 LPSKESIRRGKDL---PREG-LHPMFKNVLEGGELMALAFSERLKAFRPKQTILEA--EG 518
S +S+ R K+L P H +F + + R+++FRP +T+ E G
Sbjct: 540 QASAQSVGRAKELVASPNFAETHMLFSDDAHKAQREKENMLARIQSFRPAETVFEIGRRG 599
Query: 519 EAARSKHLQGPSSQWVDVMKKKRAVH---EKIINLVHQQRSSKSMEKEVEPEADSLMAKE 575
+ + + + V K K+A + E ++ + + S KS + VE + + +
Sbjct: 600 TGSETAEIMRKRREQVGRQKAKQAANKMAEGSLDTIDEP-SRKSNDDGVESDDEVEVENG 658
Query: 576 IKETHGS------------KRKAKTFKDEEYFISSVP-TNHHMEAGLSVRSDQGFGLNRL 622
I E+ K K ++++++YF+S +P N E V N +
Sbjct: 659 IYESDSDGLEVSVSQPTSKKSKQDSWRNDDYFMSYLPKENMAEEKAYGVSGGDAGNTNFV 718
Query: 623 E---AAVLDLVADDSGGL-QKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVK 678
AA + LV D+ G K WDK+ KKY+ N E S K+++ ESG K+
Sbjct: 719 SAARAAEMSLVNDEIQGFADAAKSKMRWDKKSKKYVNRTNDEDGSKGTKMIRGESGQKIA 778
Query: 679 AT-KTGIYKKWKERSHKKVYLKGASNEGN--AEETTSVPGGRHLGGNNRK----FRGGKN 731
A+ ++G + W++ + K+ G N A + P +H K +R +
Sbjct: 779 ASFRSGRFDDWRKANKVKMPRVGEMEAPNRSAASFNNAPRYKHKAEKAPKQADRYRDDYH 838
Query: 732 QQR------------SVPNAHVCSEIKDLDQVRKERQKKADRIAFMKGKTQKGKKF 775
Q+ + + +E++D+D VRK R+ K R A + K +KF
Sbjct: 839 VQKKRVAEAKEKRIGAFKDGGAKNELRDVDAVRKNRRVKEQRQA-KNARPSKKRKF 893
>gi|303313411|ref|XP_003066717.1| ATP-dependent RNA helicase DBP10, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240106379|gb|EER24572.1| ATP-dependent RNA helicase DBP10, putative [Coccidioides posadasii
C735 delta SOWgp]
Length = 936
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 258/570 (45%), Positives = 350/570 (61%), Gaps = 65/570 (11%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+++ L+ N+ +AI RKG+ VPTPIQRKT+PL+L DVV MARTGSGKTAAF++P
Sbjct: 88 KGGGFQAMGLNANLLKAITRKGFSVPTPIQRKTIPLVLDDQDVVGMARTGSGKTAAFVIP 147
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M+++L H + G R LILSP+R+LALQTLK KELGR TDL+ LLVGGDS+E QF +
Sbjct: 148 MIEKLKSHSTKVGSRGLILSPSRELALQTLKVVKELGRGTDLKCVLLVGGDSLEEQFGYM 207
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
A NPDIIIATPGR +H E+ ++ L S++YVVFDEAD LF MGFA QL +IL L ++R
Sbjct: 208 AGNPDIIIATPGRFLHLKVEM-NLDLSSIKYVVFDEADRLFEMGFAAQLTEILHGLPQSR 266
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSATLP +L EFA+AGL++P LVRLD ++KISPDL+ FFT++ EK ALL+++
Sbjct: 267 QTLLFSATLPKSLVEFARAGLQEPTLVRLDTESKISPDLQSVFFTVKSAEKEGALLHILH 326
Query: 261 EHIS---------------------------------------SDQQTLIFVSTKHHVEF 281
+ I ++ T+IFV+TKHHV++
Sbjct: 327 DVIKVPTGETEAGKRAKELAISGKSSKKRKRSEQNNPNPQESPTEHSTIIFVATKHHVDY 386
Query: 282 LNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINW 341
+ L RE G S YG +DQ ARKI VS FR + L+VTDVAARGIDIP+L+NVIN+
Sbjct: 387 VASLLRESGFAVSYAYGSLDQTARKIQVSNFRTGISNILVVTDVAARGIDIPILENVINY 446
Query: 342 DFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLD 401
DFP + KIFVHRVGR ARAGR G ++S V D YLLDL LFL + +
Sbjct: 447 DFPSQAKIFVHRVGRTARAGRKGWSYSLVRDADAPYLLDLQLFLGRRL------------ 494
Query: 402 MDGVMSKIDQAIAN--GETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLY 459
VM + Q AN + + G + I + V +++D D+ + + +LY
Sbjct: 495 ---VMGRGQQESANFAEDVVVGGMARESIARNCEWVSKLLDEDIDIQNQREVAMKGEKLY 551
Query: 460 SKTKPLPSKESIRRGKD-LPREG---LHPMFKNVLEGGELMALAFSERLKAFRPKQTILE 515
+T+ S ES +R KD + +G LHP+F + E+ R+ ++P++TI E
Sbjct: 552 IRTRNSASAESAKRAKDVVASDGWTMLHPLFNDEASQMEVEREQMLARIGGYKPQETIFE 611
Query: 516 AEGEAARSKHLQGPSSQWVDVMKKKRAVHE 545
G + + + +D+M+K R+ E
Sbjct: 612 ISGR----RGGKAGDDEALDMMRKIRSTME 637
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 60/110 (54%), Gaps = 9/110 (8%)
Query: 588 TFKDEEYFISSVPTNHHM--EAGLSVRSDQGFGLNRLEA---AVLDLVADDSG-GLQKQK 641
TF++ EYF+S P H E G V S G N +EA A +DL D++ G + +
Sbjct: 717 TFQNPEYFMSYTPAAHSFAEERGYGVHS--GSNSNFVEASRDATMDLSRDEANRGFAEPR 774
Query: 642 QVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKE 690
+ WDKR KKY+ N E S +VK ESGAK+ A+ ++G + WK+
Sbjct: 775 SIMRWDKRHKKYVSRRNDEDGSKGALLVKGESGAKIAASFRSGRFDAWKK 824
>gi|50551521|ref|XP_503234.1| YALI0D24497p [Yarrowia lipolytica]
gi|74689555|sp|Q6C7X8.1|DBP10_YARLI RecName: Full=ATP-dependent RNA helicase DBP10
gi|49649102|emb|CAG81435.1| YALI0D24497p [Yarrowia lipolytica CLIB122]
Length = 926
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 318/828 (38%), Positives = 443/828 (53%), Gaps = 116/828 (14%)
Query: 16 QKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTA 75
Q K SG F L LS V + I RKG+K PTPIQRKT+PL+L G DVV MARTGSGKTA
Sbjct: 95 QTGKKSSGSFAGLGLSQLVLKNIARKGFKQPTPIQRKTIPLVLEGKDVVGMARTGSGKTA 154
Query: 76 AFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMES 135
AF++PML++L H + G RA+ILSP+R+LALQTLK K+ TDLR+++LVGGDS+E
Sbjct: 155 AFVLPMLEKLKVHSAKVGARAVILSPSRELALQTLKVVKDFSAGTDLRLAMLVGGDSLEE 214
Query: 136 QFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQ 195
QF+ + NPDIIIATPGR +H E+E +SL SVEY+ FDEAD LF +GF EQ++++L
Sbjct: 215 QFKMMMSNPDIIIATPGRFLHLKVEME-LSLASVEYICFDEADRLFELGFGEQMNELLAS 273
Query: 196 LSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAAL 255
L NRQTLLFSATLP L EFAKAGL DP LVRLD +TK+ L++ FF +++ ++ A L
Sbjct: 274 LPSNRQTLLFSATLPKTLVEFAKAGLHDPILVRLDAETKLPEHLEMTFFAVKENQRDACL 333
Query: 256 LYMIRE------------------------------------------------HISSDQ 267
++++E + S++
Sbjct: 334 AFILKEVIQMPFATPEQLKELERLDERAIDDGERDEDRKQKRPKFKKERLPPAHQLPSEK 393
Query: 268 QTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAA 327
T++F TKHHVE++ VL + G S YG +DQ ARK + RFR KT L+VTDVAA
Sbjct: 394 STIVFCPTKHHVEYVIVLLQTLGYAVSYIYGTLDQHARKNQLYRFRTGKTSILVVTDVAA 453
Query: 328 RGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSK 387
RGID+P+L NVIN+ PP PK+F+HRVGR ARAG G A+S + D+ YLLDL +FL +
Sbjct: 454 RGIDVPVLANVINYSLPPSPKVFIHRVGRTARAGNRGWAYSIIKDNDIPYLLDLEVFLGR 513
Query: 388 PIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNS 447
+ L + N TI G P+ +++ + + +++ S +L
Sbjct: 514 KLLTP-----RLFKQQNPDPSAEPDYVNTLTI-GAPPRQALEIHGEELAQMVKDSYELQQ 567
Query: 448 LQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGL---HPMFKNVLEGGELMALAFSERL 504
L R+Y+KTK S+ES +R K + G H MF E GE A RL
Sbjct: 568 LSEVAVKGERMYNKTKGSASQESAKRSKQIMALGWDDHHLMFG---EDGESAKDALLARL 624
Query: 505 KAFRPKQTILEAEGEAARSKHLQGPS------SQWVDVMKK---KRAVHEK--IINLVHQ 553
R ++T+ E +SK G +Q + ++ KRA+ EK + LVH
Sbjct: 625 GQKRIRETVFEFR----KSKTTSGAEMMATRRAQLAPIQRRAAEKRAIQEKERLAGLVHS 680
Query: 554 QRS--SKSMEKEVEPEADSLMAKEIKE-----THGSKRKAKTFKDEEYFISS-VPTNHHM 605
Q + ++S E+++ EAD L +E K K ++F+D E F+S PTN
Sbjct: 681 QDAEIARSTEEDMATEAD-LTGFTTEEDLRAAKKAQKSKKRSFRDSENFMSHYAPTND-- 737
Query: 606 EAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSAS 665
+ G +V + G N A DL+ D G +QKQ WDK+ K+I N G
Sbjct: 738 DKGYAVGNFAGAASN----ATFDLIND--GSEMQQKQGMKWDKKKGKFI--NAGS--EGG 787
Query: 666 GKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNAEETTSVPGGRHLGGNNR 724
K ++ E G ++ A+ ++G + KWK +HK LK + E + T V R N
Sbjct: 788 KKFIRGEGGQRIAASFRSGRFDKWKA-AHKVGNLKVGALEESGPATKRVLSAREFKHNKN 846
Query: 725 -------KFRGGKNQQRS----------VPNAHVCSEIKDLDQVRKER 755
K+R ++Q++ + SE+K VRK R
Sbjct: 847 EAPKRADKYRDDFHKQKTKVAAAKEDGRIQKPQPKSELKSTADVRKSR 894
>gi|194864582|ref|XP_001971010.1| GG14669 [Drosophila erecta]
gi|190652793|gb|EDV50036.1| GG14669 [Drosophila erecta]
Length = 827
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 304/830 (36%), Positives = 463/830 (55%), Gaps = 115/830 (13%)
Query: 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPML 82
GGF+S+ L + + I ++GYKVPTPIQRKT+PLIL G DVVAMA+TGSGKTA FL+P+
Sbjct: 39 GGFQSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLF 98
Query: 83 QRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
++L + P G RALILSPTR+LA+QT KF KELGR+ +L+ L++GGDSM+SQF +
Sbjct: 99 EKLQRREPTKGARALILSPTRELAVQTYKFIKELGRFMELKSILVLGGDSMDSQFSAIHT 158
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
PD+I+ATPGR +H E+ D+ L S+EYVVFDEAD LF MGF EQL++ L +L +RQT
Sbjct: 159 CPDVIVATPGRFLHLCVEM-DLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLPSSRQT 217
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
++FSATLP L EFA+AGL DP L+RLDV++K+ L L F R ++++ AL+ +++
Sbjct: 218 VMFSATLPKLLVEFARAGLNDPVLIRLDVESKLPDALALKFLYCRPDDRYTALVVLLKYV 277
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
I QT++F T+HHVE ++ + E G+ S Y +D ARKI+ ++F +K LIV
Sbjct: 278 IPVQSQTVVFAGTQHHVELISYILTEAGISNSSVYSSLDPAARKINTAKFVNKKVSVLIV 337
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
TDVAARGIDIP LD V+N FP KPK+FVHRVGR ARAGRTGTA+S V+++D A+LLDLH
Sbjct: 338 TDVAARGIDIPSLDFVVNLHFPGKPKLFVHRVGRCARAGRTGTAYSIVSTDDTAHLLDLH 397
Query: 383 LFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSS 442
LFL++P + + + I Q + E + TV D I S
Sbjct: 398 LFLNRPFN---------IHDNSALGTIPQDLLEEEHL------TVTD---------IKKS 433
Query: 443 ADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVLEGGELMA----- 497
+ + RT NA++ Y ++P+ S ++ R K + L P+ ++ ++A
Sbjct: 434 HHIAGVLRTSENAYKKYLSSRPVASTDANARVKKIKFFALKPL-EDFFIAAPVLAQAAQA 492
Query: 498 ----------LAFSER------------LKAFRPKQTILEAEGEAARSKHLQGPSSQWVD 535
++ +ER +++FRP T+ E + S+Q++
Sbjct: 493 SGQSTESQAEVSATERKLQEQKHDILVKMRSFRPGGTVFEL--------NTTQKSTQFI- 543
Query: 536 VMKKKRAVHEKIINLVHQQRSSKSMEKEVE------------PEAD-SLMAKEIKETHGS 582
VMK+KR H ++I+ QQR+ + +++E + P AD ++ +
Sbjct: 544 VMKEKRMQHAEVISKFRQQRAEEDIDEEKKTIEALNPSSGRMPTADEEAISSTFNKVVAP 603
Query: 583 KR----------------KAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAV 626
KR + KDE++++ + H E GL++ + N E +V
Sbjct: 604 KRLQNMDALYKDKPKKKKRKINSKDEDHYVPYQSADKHTEDGLAINKFERQAQN-AEFSV 662
Query: 627 LDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIY 685
D + S ++ + + WD+ KK + + + ++TESGA + A+ KTG Y
Sbjct: 663 SD--RNSSQDVKHKPGLKKWDRIKKKMVSVQD-----PRANKIRTESGAWIPASFKTGRY 715
Query: 686 KKWKERSHKKVYLK---GASNEGNAEETTSV---PGGRHLGGN----NRKFRGGKNQQRS 735
+WKE+S + L+ S++ NA+ + P RH N +K G +++
Sbjct: 716 AEWKEKSKIEDQLQRENAGSDDENAKPLSHAQRYPVSRHARHNLKLELKKRLTGNDKEMR 775
Query: 736 VPNAHVCSEIKDLDQVRKERQKKADRIAFMKG----KTQKGKKFSKNGKR 781
P V S ++ L+ ++K ++ A++ + + KTQ+ K S G R
Sbjct: 776 RPEQIVKSRMR-LEFIKKRNEENAEKKSENRKRSMRKTQRPKAQSTGGSR 824
>gi|390602288|gb|EIN11681.1| DEAD-domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 970
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 317/864 (36%), Positives = 472/864 (54%), Gaps = 154/864 (17%)
Query: 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGA--DVVAMARTGSGKTAAFLVP 80
G F+S+ L P + R++ +G+++PTPIQR ++P +LS D+V MARTGSGK+ A+++P
Sbjct: 106 GSFQSMGLHPWILRSLSLQGFRIPTPIQRLSIPSLLSNPPRDLVGMARTGSGKSLAYMIP 165
Query: 81 MLQRLN-QHVPQGGVRALILSPTRDLALQTLKFTKEL--GRYTD---------------- 121
++QRL+ H G RALIL PTR+LALQ L+ KEL GR+
Sbjct: 166 LIQRLDGMHSSTFGARALILLPTRELALQILRVGKELARGRFAGGGEHAGDTAGDAEQSK 225
Query: 122 ----LRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEA 177
LR +L+VGG+ ++ QFE + NPD+IIATPGRL+H + E+ ++ L+SVEYVVFDEA
Sbjct: 226 KGQGLRWALVVGGEGLDEQFEMMTNNPDVIIATPGRLLHLIVEM-NLDLRSVEYVVFDEA 284
Query: 178 DCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISP 237
D LF MGF + +IL +L +RQTLLFSATLP +L EFAKAGL+DP LVRLD ++KIS
Sbjct: 285 DRLFEMGFETAMTEILHRLPASRQTLLFSATLPKSLVEFAKAGLQDPKLVRLDAESKISS 344
Query: 238 DLKLAFFTLRQEEKHAALLYMIREHI--------------------------------SS 265
DLK+AFF+++Q EK A LL ++R+ I ++
Sbjct: 345 DLKMAFFSVKQAEKDACLLTLLRDVIQVPLGSSSNSAHEEPTDKKGKGKAKAKSHEIQTA 404
Query: 266 DQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV 325
QTL+FV+TKHHVE+L L G S YG +DQ AR I + +FR +T L+VTDV
Sbjct: 405 PHQTLVFVATKHHVEYLTTLLATAGYAVSHIYGSLDQTARTIQMDQFRRGQTSILVVTDV 464
Query: 326 AARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFL 385
AARGIDIP+L+NVIN+DFP ++FVHRVGR ARAGR G A+SFVT+ ++ YLLDL LFL
Sbjct: 465 AARGIDIPVLENVINYDFPQGARVFVHRVGRTARAGRPGWAWSFVTNTELPYLLDLQLFL 524
Query: 386 SKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIY------GRFPQTVIDLVSDRVREII 439
+P++ S++D A G+++Y G F + ID + +R +
Sbjct: 525 GRPLK----------------SEVDDA-GVGDSVYAENLVLGTFHRDKIDQEVESIRGLD 567
Query: 440 DSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRG----KDLP---------REGLHPMF 486
+ + L +L+ +Y ++K S S +R KD+P G+HP+
Sbjct: 568 EINHSLYTLREVMRKGQSMYERSKGKASPASYKRAKAMTKDIPGKWGLAGSAEAGVHPVL 627
Query: 487 KNVLEGGELMAL-------AFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKK 539
++ A A + + +FRP +T+ E K QG S + +MK+
Sbjct: 628 LRGRSEAQMEARHTEDAKKALLKAVNSFRPAETVFEI------GKKGQG-SGETAALMKQ 680
Query: 540 KRAVHEKIINLVHQQRSSKSM-----EKEVEPEADSL----MAKE--IKETHGSKRKAK- 587
+R EK +S+++ E E E ++ MA E I+ G++ K +
Sbjct: 681 RRKALEKAKQRAALTSTSQALVEGQDEGEQEDAGENATSIEMADEEDIEAVFGTEHKNRG 740
Query: 588 --TFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQK-QVY 644
+++D EY++S V + E G S+ F + A DL D+ GL+ QK Q
Sbjct: 741 KGSYRDSEYYLSYVQKGNAAEKGYSLTDGASFA-EQARNATFDLTGDE--GLKSQKRQQL 797
Query: 645 HWDKRGKKYIKLNNGERVSASG-KVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKG-A 701
WD++ KK++K G+ A K+VKTESG K+ AT ++G + +WK ++ + G
Sbjct: 798 RWDQKKKKFVK---GDGAGADNVKMVKTESGTKLPATYRSGRFDEWKAKTRNNLPRVGEM 854
Query: 702 SNEGNAEETTSVPGGRHLGGNNRKFRGGKNQQRSVPNAHVCSEIKDLDQVRKERQKKADR 761
EG+ + PGG RKF+ K +E K LD++ K+ ++K +
Sbjct: 855 EQEGSRARRSGGPGG-------RKFKHNK-----------VTEAKPLDKLSKDYERKVKQ 896
Query: 762 IAFMKGKTQKGKKFSKNGKRGKPR 785
+ + +KG++ + +GK R
Sbjct: 897 VK----RAEKGEEQAGPSPKGKGR 916
>gi|389644026|ref|XP_003719645.1| ATP-dependent RNA helicase DBP10 [Magnaporthe oryzae 70-15]
gi|152013475|sp|A4R5B8.1|DBP10_MAGO7 RecName: Full=ATP-dependent RNA helicase DBP10
gi|351639414|gb|EHA47278.1| ATP-dependent RNA helicase DBP10 [Magnaporthe oryzae 70-15]
Length = 914
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 287/738 (38%), Positives = 421/738 (57%), Gaps = 95/738 (12%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+++ L+P++ +AI RKG+ VPTPIQRK++PLIL DVV MARTGSGKTAAF++PM++R
Sbjct: 92 FQAMGLNPSLLQAITRKGFAVPTPIQRKSIPLILDRRDVVGMARTGSGKTAAFVIPMIER 151
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L H + G RALI+SP+R+LALQTLK KE G+ TDL+ LLVGGDS+E QF + NP
Sbjct: 152 LRAHSARVGARALIMSPSRELALQTLKVVKEFGKGTDLKTVLLVGGDSLEDQFGFMTTNP 211
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
DIIIATPGR +H E+ + L S++YVVFDEAD LF MGFA QL +IL L +RQTLL
Sbjct: 212 DIIIATPGRFLHLKVEMS-LDLSSIKYVVFDEADRLFEMGFATQLTEILHSLPPSRQTLL 270
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSATLP +L EFA+AGL+DP LVRLD +TKISPDL+ AFF+++ EK ALL+++++ I
Sbjct: 271 FSATLPRSLVEFARAGLQDPSLVRLDAETKISPDLESAFFSVKGAEKEGALLHILQDVIK 330
Query: 265 ---------------------------------SDQQTLIFVSTKHHVEFLNVLFREEGL 291
++ T+IF +TK HVE+L + + G
Sbjct: 331 MPTGTPEGFKEDKDEGSKKRKRGPDRPNAKEKPTEHSTIIFTATKFHVEYLTSILVQAGY 390
Query: 292 EPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFV 351
S YG +DQ ARKI V FR KT L+VTDVAARGIDIP+L NVIN+DF +PK+FV
Sbjct: 391 AVSHAYGALDQTARKIQVEDFRRGKTNILVVTDVAARGIDIPVLANVINYDFCDQPKVFV 450
Query: 352 HRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQ 411
HRVGR ARAG+ G ++S V+ D YLLDL LFL + + V+ +
Sbjct: 451 HRVGRTARAGQKGWSYSLVSDIDAPYLLDLQLFLGRRL---------------VVGQDTS 495
Query: 412 AIAN--GETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKE 469
A AN + + G + I+ + V +++ S D+ ++ A + Y +T+ S +
Sbjct: 496 AGANFASDVVLGALQRNSIETNVEWVEKVVQESHDIALMRSVVVKAQKQYLRTRVSASSQ 555
Query: 470 SIRRGKDLPREGL----HPMFKNVLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKH 525
S +R ++L H +F + E + + ++ F+P++T+ E G +
Sbjct: 556 SAKRARELTASRAWSQPHLIFGINTDDTEALRVEMLAKISGFKPQETVFEI-GHGGK--- 611
Query: 526 LQGPSSQWVDVMK--KKRAVHEK------------IINLVHQQRSSKSMEKE-------- 563
G S+ V+VMK +KRA K + ++ + +S +S +++
Sbjct: 612 --GTISEAVEVMKQLRKRAPVRKSKTDKDADDEDEDVPVIKRAKSDESSDEDASFDEDDF 669
Query: 564 --VEPEADSLMAKEIKETHGSKRKAKTFKDEEYFISSVP--TNHHMEAGLSVRSDQGFGL 619
V ++D + + S + A ++D E+F++ P +N E G V + G
Sbjct: 670 VAVNDDSDEELEVTVSNNADSAKNASAWRDSEHFMTYTPRQSNVAEERGYGVNAGSN-GA 728
Query: 620 NRLEAA---VLDLVADDSGGL--QKQKQVYHWDKRGKKYIKLNNGERVS-ASGKVVKTES 673
N LEAA +D+ D+ + WDK+ KY+ + E S + K+++ ES
Sbjct: 729 NFLEAARDVAMDIANDEKSTSFGAPTRTTMRWDKKNAKYVSRAHDEDGSRGNTKMIRGES 788
Query: 674 GAKVKAT-KTGIYKKWKE 690
G K+ A+ K+G + +W++
Sbjct: 789 GVKIAASFKSGRFDRWRK 806
>gi|195490088|ref|XP_002092996.1| GE21030 [Drosophila yakuba]
gi|194179097|gb|EDW92708.1| GE21030 [Drosophila yakuba]
Length = 827
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 307/829 (37%), Positives = 457/829 (55%), Gaps = 113/829 (13%)
Query: 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPML 82
GGF+S+ L + + I ++GYKVPTPIQRKT+PLIL G DVVAMA+TGSGKTA FL+P+
Sbjct: 39 GGFQSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLF 98
Query: 83 QRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
++L + P G RALILSPTR+LA+QT KF KELGR+ +L+ L++GGDSM+SQF +
Sbjct: 99 EKLQRREPTKGARALILSPTRELAVQTYKFIKELGRFMELKTILVLGGDSMDSQFSAIHT 158
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
PD+I+ATPGR +H E+ D+ L S+EYVVFDEAD LF MGF EQL++ L +L +RQT
Sbjct: 159 CPDVIVATPGRFLHLCVEM-DLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLPSSRQT 217
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
++FSATLP L EFA+AGL DP L+RLDV++K+ L L F R ++++ AL+ +++
Sbjct: 218 VMFSATLPKLLVEFARAGLNDPVLIRLDVESKLPDALALKFLYCRPDDRYTALVVLLKYV 277
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
I + QT++F T+HHVE ++ + E G+ + Y +D ARKI+ ++F +K LIV
Sbjct: 278 IPVESQTVVFAGTQHHVELISYILTEAGISNASVYSSLDPAARKINTAKFVNKKVSVLIV 337
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
TDVAARGIDIP LD V+N FP KPK+FVHRVGR ARAGRTGTA+S V+++D A+LLDLH
Sbjct: 338 TDVAARGIDIPSLDFVVNLHFPGKPKLFVHRVGRCARAGRTGTAYSIVSTDDTAHLLDLH 397
Query: 383 LFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSS 442
LFL++P S + I Q + E + TV D I S
Sbjct: 398 LFLNRPFNIHDS---------SALGTIPQDLLEEEHL------TVTD---------IKKS 433
Query: 443 ADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPM---FKNVL--------- 490
+ + RT NA++ Y ++P+ S ++ R K + L P+ F
Sbjct: 434 HHIAGVLRTSENAYKKYLSSRPVASTDANARVKKIKFFALKPLEDFFTAAPALAQAAEAS 493
Query: 491 -EGGELMA-LAFSER------------LKAFRPKQTILEAEGEAARSKHLQGPSSQWVDV 536
+ E A ++ +ER +++FRP T+ E + S+Q+V V
Sbjct: 494 GQSAESQAKVSATERKLQEEKHDILVKMRSFRPGGTVFEL--------NTTQKSTQFV-V 544
Query: 537 MKKKRAVHEKIINLVHQQRSSKSMEKEVE------------PEAD-SLMAKEIKETHGSK 583
MK+KR H ++I+ QQR+ + +++E + P AD ++ + K
Sbjct: 545 MKEKRLQHAEVISKFRQQRAEEDIDEEKKTTEALKPSSNRMPTADEEAISSTFNKVVAPK 604
Query: 584 R----------------KAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVL 627
R + KDE++++ + H E GL++ + + N E +V
Sbjct: 605 RLQNMDALYKDKPKKKKRKINSKDEDHYVPYQSADKHTEDGLAINNFERQAQN-AEFSVS 663
Query: 628 DLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYK 686
D + S ++ + + WD+ KK + + + ++TESGA + A+ KTG Y
Sbjct: 664 D--HNPSQDVKHKPGLKKWDRIKKKMVSVQD-----PRANKIRTESGAWIPASFKTGRYA 716
Query: 687 KWKERSHKKVYLK------GASNEGNAEETTSVPGGRHLGGNN----RKFRGGKNQQRSV 736
+WKE+S + L+ G N P RH N +K G +++
Sbjct: 717 EWKEKSKIEDQLQRENADSGDENAKPLSHAQRYPVSRHARHNVKLELKKRLTGNDKEMRR 776
Query: 737 PNAHVCSEIKDLDQVRKERQKKADRIAFMKG----KTQKGKKFSKNGKR 781
P V S ++ L+ ++K + A+R + + KTQ+ K S G R
Sbjct: 777 PEQIVKSRMR-LEFIKKRNEDNAERKSENRKRSMRKTQRPKAQSTGGSR 824
>gi|340521482|gb|EGR51716.1| predicted protein [Trichoderma reesei QM6a]
Length = 914
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 257/557 (46%), Positives = 349/557 (62%), Gaps = 59/557 (10%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+++ L+ N+ +AI RKG+ VPTPIQRKT+PL+L DVV MARTGSGKTAAF++P
Sbjct: 85 KGGGFQAMGLNANLLKAIARKGFSVPTPIQRKTIPLVLERKDVVGMARTGSGKTAAFVIP 144
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M++RL H + G RALILSP+R+LA+QTLK KELGR TDL+ LLVGGDS+E QF +
Sbjct: 145 MIERLRAHSSKFGSRALILSPSRELAIQTLKVVKELGRGTDLKSVLLVGGDSLEEQFGFM 204
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
+ NPDI+IATPGR +H E+ + L S++YVVFDEAD LF MGFA QL +IL L +R
Sbjct: 205 SANPDIVIATPGRFLHLKVEM-GLDLSSIKYVVFDEADRLFEMGFATQLTEILHALPPSR 263
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSATLP++L EFA+AGL+DP LVRLD DTK+SPDL+ AFF+++ EK +LL+++
Sbjct: 264 QTLLFSATLPASLVEFARAGLQDPSLVRLDADTKVSPDLETAFFSIKGAEKEGSLLHILH 323
Query: 261 EHIS-------------------------------SDQQTLIFVSTKHHVEFLNVLFREE 289
+ I ++ T+IF +TKHHVE+L L +
Sbjct: 324 DVIKVPLGPPASAVEETEKNSKKRKRQPDNGAGKPTEHSTIIFAATKHHVEYLYNLLKHA 383
Query: 290 GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKI 349
G S YG +DQ AR+I V FR KT L+VTDVAARGIDIP+L NVIN+DFPP+PK+
Sbjct: 384 GFATSHVYGSLDQTARRIQVEDFRMGKTNLLVVTDVAARGIDIPVLANVINYDFPPQPKV 443
Query: 350 FVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKI 409
F+HRVGR ARAG+ G A+S V D YLLDL LFL K + +E E D
Sbjct: 444 FIHRVGRTARAGQRGWAYSLVRDVDAPYLLDLQLFLGKKLVLGQTETEPSYRDD------ 497
Query: 410 DQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKE 469
+ G + + + + + + + D+ +L+ A +LY KT+ S +
Sbjct: 498 --------VVVGSLQRDAVGTHVEWLNKFLKENEDVEALRGVAAKAEKLYMKTRNSASSQ 549
Query: 470 SIRRGK-DLPREG---LHPMFKNVLEGGELMALAFSERLKAFRPKQTILE-AEGEAARSK 524
S +R + ++ +G LHP+F ++G E A R+ F+P++TI E +G+ A
Sbjct: 550 SAKRAREEVASKGWSQLHPLFGKDVDGMEEARAAMLARISNFKPQETIFEVGQGDKA--- 606
Query: 525 HLQGPSSQWVDVMKKKR 541
+S +VMK+ R
Sbjct: 607 -----TSAAAEVMKQLR 618
>gi|195108365|ref|XP_001998763.1| GI24146 [Drosophila mojavensis]
gi|193915357|gb|EDW14224.1| GI24146 [Drosophila mojavensis]
Length = 829
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 298/787 (37%), Positives = 433/787 (55%), Gaps = 122/787 (15%)
Query: 18 KKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77
K KSGGF+SL L + + I ++GYKVPTPIQRKT+PLIL G DVVAMA+TGSGKTA F
Sbjct: 33 KSKKSGGFQSLGLGFELLKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACF 92
Query: 78 LVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF 137
L+P+ ++L + P G RALILSPTR+LA+QT KF K+LGR+ +L+ L++GGDSM+SQF
Sbjct: 93 LIPLFEKLQRREPTKGARALILSPTRELAVQTYKFIKDLGRFMELKTILVLGGDSMDSQF 152
Query: 138 EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS 197
+ PDII+ATPGR +H E+ D+ L S+EYVVFDEAD LF MGF EQL++ L +L
Sbjct: 153 SAIHTCPDIIVATPGRFLHLCVEM-DLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLP 211
Query: 198 ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLY 257
+RQT++FSATLP L EFA+AGL DP L+RLDV++K+ L L F R ++++ AL+
Sbjct: 212 SSRQTVMFSATLPKLLVEFARAGLSDPVLIRLDVESKLPDTLSLKFLYCRPDDRYTALVV 271
Query: 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKT 317
+++ I + QT++F T+HHVE ++ + + G+ + Y +D ARKI+ ++F ++K
Sbjct: 272 LLKYVIPQEAQTVVFAGTQHHVELISFILTQAGISNTSVYSSLDPAARKINTAKFASKKV 331
Query: 318 MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAY 377
LIVTDVAARGIDIP LD V+N FP PK+FVHRVGR ARAGRTGTA+S +++D A+
Sbjct: 332 SVLIVTDVAARGIDIPSLDYVVNLHFPGVPKLFVHRVGRCARAGRTGTAYSIFSTDDTAH 391
Query: 378 LLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVRE 437
LLDLHLFL++P N + G PQ +++ V E
Sbjct: 392 LLDLHLFLNRPFN-----------------------INDNSSIGTIPQDLLEEEYLTVNE 428
Query: 438 IIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPM--FKN---VLEG 492
I S + + RT NA++ Y ++P S ++ R K + L + F N VLE
Sbjct: 429 -IKKSHHIAGVLRTSENAYKKYLSSRPTASTDANARAKKIKFFALKTLEDFFNAAPVLEQ 487
Query: 493 GELMA-----------LAFSER------------LKAFRPKQTILEAEGEAARSKHLQGP 529
++ +A ER ++ FRP TI E +
Sbjct: 488 AAKISGQKLDDESRADVAECERKLENEKHDILVKMRNFRPSGTIFEL--------NTTQK 539
Query: 530 SSQWVDVMKKKRAVHEKIINLVHQQRSSKSMEKEVEPEADSLMAKEIKETHGSKRKAKTF 589
S +V VMK KR+ H ++I QQR+ + ++ EV+ D+ I T + + TF
Sbjct: 540 SVPFV-VMKDKRSHHTEVIEKFRQQRAKEDID-EVQKVVDAQKPSTI-STADDESISNTF 596
Query: 590 -----------------------------KDEEYFISSVPTNHHMEAGLSVRSDQGFGLN 620
KDEE ++ + H E GL++ S + N
Sbjct: 597 KKVVAPKKRQNMDALYADKPKKKKRKVQAKDEENYVPYQSADKHTEDGLAINSFERQARN 656
Query: 621 RLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT 680
E +V + + + ++ + + WD+ KK + + + ++TESGA + A+
Sbjct: 657 -AEFSVYE--RNPAQDVKHKPGLKKWDRIKKKMVSVQD-----PRANKIRTESGAWIPAS 708
Query: 681 -KTGIYKKWKERSHKKVYLKGASNEGNAEET-------TSVPGGRH------------LG 720
KTG Y +WKE+S + L+ N G+ +E P GRH +
Sbjct: 709 FKTGRYTEWKEKSKIEEQLQ-RENAGSDDENFKPLSHAQRYPVGRHARYNAKLELKKRIS 767
Query: 721 GNNRKFR 727
GN+++ R
Sbjct: 768 GNDKELR 774
>gi|440637343|gb|ELR07262.1| ATP-dependent RNA helicase dbp10 [Geomyces destructans 20631-21]
Length = 928
Score = 474 bits (1219), Expect = e-130, Method: Compositional matrix adjust.
Identities = 292/755 (38%), Positives = 404/755 (53%), Gaps = 106/755 (14%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+++ L+ ++ +AI RKG+ VPTPIQRK +PLIL DVV MARTGSGKTAAF++PM+++
Sbjct: 92 FQAMGLNSHLLKAIGRKGFSVPTPIQRKAIPLILDSQDVVGMARTGSGKTAAFVIPMIEK 151
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L H + G RALILSP+R+LALQTL+ K+ GR TDL+ LLVGGDS+E QF +A NP
Sbjct: 152 LKAHSAKVGARALILSPSRELALQTLQVVKQFGRGTDLKCVLLVGGDSLEEQFGFMASNP 211
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
DI+IATPGR +H E+ + L S++YVVFDEAD LF MGFA QL +IL L +RQTLL
Sbjct: 212 DIVIATPGRFLHLKVEM-GLDLSSMKYVVFDEADRLFEMGFAAQLTEILYALPSSRQTLL 270
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE--- 261
FSATLP +L EFA+AGL +P LVRLD ++KISPDL+ AFFT++ EEK ALL+++ +
Sbjct: 271 FSATLPKSLVEFARAGLEEPSLVRLDAESKISPDLQSAFFTIKSEEKEGALLHILHDLIR 330
Query: 262 -----------------------------HISSDQQTLIFVSTKHHVEFLNVLFREEGLE 292
H ++ T++F +TKHHV++L L R G
Sbjct: 331 MPTGPPPAAVAAAEASKKRKRGDDGRGPKHKPTEHSTIVFAATKHHVDYLASLLRLSGFA 390
Query: 293 PSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVH 352
S YG +DQ ARK+ V FR T L+VTDVAARGIDIP+L NV+N+DFPP+PKIFVH
Sbjct: 391 VSHAYGSLDQTARKMQVEDFRTGMTNILVVTDVAARGIDIPVLANVVNYDFPPQPKIFVH 450
Query: 353 RVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQA 412
RVGR ARAG+ G ++S V D YLLDL LFL + + D
Sbjct: 451 RVGRTARAGQRGWSYSLVKETDAPYLLDLQLFLGRRLLLG-------------RESGDSP 497
Query: 413 IANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIR 472
+ I G + ++ + + +++ DL +L+ RLY KT+ S ES +
Sbjct: 498 NYAEDVIVGSVVRDKLETNQEWINKLLRDDDDLAALRGVSVKGERLYLKTRNSASSESAK 557
Query: 473 RGKDLPREG----LHPMFKNVLEGGELMALAFSERLKAFRPKQTILE-------AEGEAA 521
R K LHP+F E + R+ FRP +T+ E GEAA
Sbjct: 558 RAKQSVASAQWIQLHPLFNTETNSNEQARIDMLARIAGFRPTETVFEVGYKGKAGHGEAA 617
Query: 522 -------------RSKHLQGPSSQWVDVMKKKRAVHE-KIINLVHQQRSSKSMEKEV--- 564
R K + ++ ++ + ME +
Sbjct: 618 EVMRARRQKIIPRRQKAIDDAKAEATELTDDDDTFQGISMAAPAEDDHDDSDMEVTISGG 677
Query: 565 ------EPEADSLMAKEIKETHGSKRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFG 618
E D L K K + ++KD E F+S P N L+ ++G+G
Sbjct: 678 NDVDMAEASEDELEVTFSKAAQKGKGRTLSYKDSENFMSYTPKN------LNAAEERGYG 731
Query: 619 L------------NRLEAA---VLDLVADD---SGGLQKQKQVYHWDKRGKKYIKLNNGE 660
+ N +EAA +DL DD S Q + WDK+ KY+ N E
Sbjct: 732 VHSGSYNTASQNSNFVEAARGVTMDLTNDDGAKSFAEPSQAKGMRWDKKNSKYVARANDE 791
Query: 661 RVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHK 694
S K+++ ESG K+ A+ ++G + +W+ ++HK
Sbjct: 792 DGSKGAKMIRGESGQKIAASFQSGRFDRWR-KAHK 825
>gi|302679352|ref|XP_003029358.1| hypothetical protein SCHCODRAFT_257992 [Schizophyllum commune H4-8]
gi|300103048|gb|EFI94455.1| hypothetical protein SCHCODRAFT_257992 [Schizophyllum commune H4-8]
Length = 924
Score = 473 bits (1217), Expect = e-130, Method: Compositional matrix adjust.
Identities = 306/812 (37%), Positives = 450/812 (55%), Gaps = 141/812 (17%)
Query: 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGA--DVVAMARTGSGKTAAFLVP 80
G F+S+ L P++ R++ +G+++PTPIQR ++P +L+ D+V MARTGSGKT +++P
Sbjct: 95 GSFQSMGLHPSLLRSLTLQGFRIPTPIQRLSIPALLANPPRDLVGMARTGSGKTLGYMIP 154
Query: 81 MLQRLN-QHVPQGGVRALILSPTRDLALQTLKFTKELGRY-------------------- 119
++QRL +H G RALIL PTR+LALQ L+ KEL R
Sbjct: 155 LVQRLGGRHSTTFGARALILIPTRELALQILRVGKELARGWHSCQGDHAGDSKTEETSKG 214
Query: 120 TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179
LR L+VGG+ M+ QFE + NPD+IIATPGRL+H + E+ ++ LKSV+YVVFDEAD
Sbjct: 215 QSLRWGLIVGGEGMDEQFEMMTNNPDVIIATPGRLLHLIVEM-NLDLKSVQYVVFDEADR 273
Query: 180 LFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDL 239
LF MGF L++IL +L +RQTLLFSATLP +L EFAKAGL+DP L+RLD ++KIS DL
Sbjct: 274 LFEMGFETALNEILHRLPTSRQTLLFSATLPKSLVEFAKAGLQDPKLIRLDAESKISSDL 333
Query: 240 KLAFFTLRQEEKHAALLYMIREHI-------------------------------SSDQQ 268
K+AFF+++ EK A LL ++R+ I ++ Q
Sbjct: 334 KMAFFSVKAAEKEACLLELLRDVIKVPLGKVNAEEDEEGATKSKGKGKAKRGEIFTAPHQ 393
Query: 269 TLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAAR 328
TLIF +TKHHVE+L L G S YG +DQ AR + RFR T L+VTDVAAR
Sbjct: 394 TLIFAATKHHVEYLTTLLSTAGYAVSHIYGSLDQTARSQQMERFRRGITTILVVTDVAAR 453
Query: 329 GIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKP 388
GIDIP+L+NV+N+DFP ++FVHRVGR ARAGR G A+SFVT+ ++ YLLDL LFL +P
Sbjct: 454 GIDIPVLENVVNYDFPQGARVFVHRVGRTARAGRQGWAWSFVTNTELPYLLDLQLFLGRP 513
Query: 389 IR--AAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLN 446
+R A P +EV + I G F + ID + + + D+ L
Sbjct: 514 LRPDAPPGGDEVFAE---------------NLILGTFRRESIDEDMEYIVSLHDTEHSLA 558
Query: 447 SLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPRE----------GLHPMFKNVLEG-GEL 495
++ R+Y +++ S S +R KD+ R+ G+HP+ +L G GE+
Sbjct: 559 MQKQVMQRGQRMYERSQGKASPPSYKRAKDILRDPKWMLTGTQTGVHPV---LLRGEGEV 615
Query: 496 MALAFSERLKA-------FRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKII 548
E KA FRP +T+ E SK+ +S+ +MK +R
Sbjct: 616 EKRQTEEARKAILQAVSTFRPAETVFEVG-----SKN----NSETAALMKARRTA----- 661
Query: 549 NLVHQQRSSKSMEKEVEPEADSLMAKEIKETHGSKRKAKTFKDEEYFISSVPTNHHMEAG 608
+ ++ S KEVE + +A+ K + F+D ++++S + EAG
Sbjct: 662 --LDEEEEVSSGRKEVEMADEEDIARVFDTG-----KQQGFRDNDFYLSYQQKDAIAEAG 714
Query: 609 LSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASG-K 667
S+ + Q F + + A DL D++ L KQ++ HWDK+ K++++ G+ V A K
Sbjct: 715 YSLSNGQSF-VEQARGAQFDLTGDEN-LLDKQRKQMHWDKKKKRFVQ---GDGVGADNVK 769
Query: 668 VVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNAEETTSVPGGRHLGGNNRKF 726
+V+TESG ++ AT ++G + +WK+RSH + G +E+ SV GR ++F
Sbjct: 770 LVRTESGQRLPATYRSGRFDEWKQRSHASLPKVG------EQESESVNRGR----PGQRF 819
Query: 727 RGGKNQQRSVPNAHVCSEIKDLDQVRKERQKK 758
+ K V + K LD++R + ++K
Sbjct: 820 KHNK----------VATSTKPLDKLRTDYERK 841
>gi|156049231|ref|XP_001590582.1| hypothetical protein SS1G_08322 [Sclerotinia sclerotiorum 1980]
gi|154692721|gb|EDN92459.1| hypothetical protein SS1G_08322 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 828
Score = 473 bits (1216), Expect = e-130, Method: Compositional matrix adjust.
Identities = 320/858 (37%), Positives = 452/858 (52%), Gaps = 143/858 (16%)
Query: 28 LNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQ 87
+ L+ ++ +AI RKG+ VPTPIQRKT+PL+L DVV MARTGSGKTAAF++PM+++L
Sbjct: 1 MGLNSHLLKAISRKGFNVPTPIQRKTIPLVLDNQDVVGMARTGSGKTAAFVIPMIEKLRA 60
Query: 88 HVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDII 147
H + G RALI+SP+R+LALQTLK KE GR TDL+ LLVGGDS+E QF +A NPDI+
Sbjct: 61 HSVRVGARALIMSPSRELALQTLKVVKEFGRGTDLKCVLLVGGDSLEEQFGFMAANPDIV 120
Query: 148 IATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSA 207
IATPGR +H E+ + L S++YVVFDEAD LF MGFA QL +IL L +RQTLLFSA
Sbjct: 121 IATPGRFLHLKVEMS-LDLSSMKYVVFDEADRLFEMGFAAQLGEILHALPISRQTLLFSA 179
Query: 208 TLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS--- 264
TLP +L EFA+AGL++P LVRLD ++K+SPDL+ AFF+++ EK ALL+++++ +
Sbjct: 180 TLPKSLVEFARAGLQEPSLVRLDAESKVSPDLQSAFFSVKGAEKEGALLHILQDLVKMPT 239
Query: 265 ------------------------------SDQQTLIFVSTKHHVEFLNVLFREEGLEPS 294
++ T+IF +TKHHV++L L R G S
Sbjct: 240 GLPENALNATDNFSKKRKRGPDGPTKKLKPTEHSTIIFAATKHHVDYLASLLRMSGFAVS 299
Query: 295 VCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRV 354
YG +DQ AR I V FR K+ L+VTDVAARGIDIP+L NVIN+DFPP+PK+FVHRV
Sbjct: 300 HAYGSLDQTARNIQVEDFRTGKSNILVVTDVAARGIDIPVLANVINYDFPPQPKVFVHRV 359
Query: 355 GRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRA------APSEEEVLLDMDGVMSK 408
GR ARAG+ G ++S V D YLLDL LFL + + +P+ E
Sbjct: 360 GRTARAGQRGWSYSLVRDTDAPYLLDLQLFLGRRLLLGRDCGDSPNYAE----------- 408
Query: 409 IDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSK 468
+ I G + ++ S+ + +++ DL +L+ +LY KT+ S
Sbjct: 409 --------DVIVGALQRNEVESKSEWITKLLYDDDDLTALRNVAGKGEKLYVKTRNSASS 460
Query: 469 ESIRRGKD-LPREG---LHPMFKNVLEGGELMALAFSERLKAFRPKQTILEAEGEAARSK 524
ES +R K+ + +G LHP+FK+V G E L ++ FRP +T+ E G+ ++
Sbjct: 461 ESAKRAKEVVASKGWMELHPLFKDVTNGAEQARLEMLAKISGFRPNETVFEI-GQKGKAA 519
Query: 525 HLQGPSSQWVDVMKKKRAVHEKII------------------------NLVHQQRSSKSM 560
H S+ ++M+ +R EKII + + + +
Sbjct: 520 H-----SEAAEIMRHRR---EKIIPRRQKEEDEKAAAAAAAAEEDNFDSPAEENDDNDDL 571
Query: 561 EKEVEPEADSLMAKEIKETHGSKRKAK--------TFKDEEYFISSVP--TNHHMEAGLS 610
E V D + E + KA ++KD E F+S P N E G
Sbjct: 572 EVTVTGGDDDMAEASDGELEVTFSKAAQKGKGRTLSWKDSENFMSYTPKTINTAEERGYG 631
Query: 611 VRSDQ----GFGLNRLEAA---VLDLVADD---SGGLQKQKQVYHWDKRGKKYIKLNNGE 660
V S N +EAA +DL DD S + + WDK+ KY+ N E
Sbjct: 632 VHSGSYNTASQNSNFVEAARGVTMDLTNDDGAKSFAEPSKAKGMRWDKKNSKYVARANDE 691
Query: 661 RVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNAEETTSVPG-GRH 718
S K ++ ESG K+ A+ ++G + +W R KV + E E S G GR
Sbjct: 692 DGSKGIKYIRGESGQKIAASFQSGRFDRW--RKAHKVDRMPRTGEAEREGPASAGGVGRG 749
Query: 719 LGG--NNRKFRGGKNQQRSVPNAHV---------------------CSEIKDLDQVRKER 755
G +++ R K + + HV SEIK + +RK+R
Sbjct: 750 FGTRYKHKQERAPKEADKYRDDYHVRKKRVAEAKENRVGSFKDGSGKSEIKSTEDIRKDR 809
Query: 756 QKKADRIAFMKGKTQKGK 773
+ + R A ++KGK
Sbjct: 810 KLQERRKAKNARPSKKGK 827
>gi|296422662|ref|XP_002840878.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637104|emb|CAZ85069.1| unnamed protein product [Tuber melanosporum]
Length = 838
Score = 473 bits (1216), Expect = e-130, Method: Compositional matrix adjust.
Identities = 290/720 (40%), Positives = 396/720 (55%), Gaps = 112/720 (15%)
Query: 15 KQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKT 74
K K K GGF+S+ L+ + +AI RKG+ VPTPIQRKT+PL+L G DVV MARTGSGKT
Sbjct: 81 KCKSIKKGGGFQSMGLNMTLLKAITRKGFSVPTPIQRKTIPLVLDGVDVVGMARTGSGKT 140
Query: 75 AAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSME 134
AAF++PM++RL H + G+RAL+LSP+R+LALQT+K KE GR TDL++ LLVGGDS+E
Sbjct: 141 AAFVIPMVERLKTHSVRVGMRALVLSPSRELALQTMKVVKEFGRGTDLKVVLLVGGDSLE 200
Query: 135 SQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILG 194
QF +A NPDI+IATPGR MH E+E + L+SV+YVVFDEAD LF MGF+ QL +IL
Sbjct: 201 EQFGYMAGNPDIVIATPGRFMHLKVEME-LDLRSVQYVVFDEADRLFEMGFSAQLTEILH 259
Query: 195 QLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAA 254
L NRQTLLFSATLP++ EK A
Sbjct: 260 SLPSNRQTLLFSATLPNS-------------------------------------EKEGA 282
Query: 255 LLYMIRE------HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIH 308
LL+++++ +S T++F +TKHHVE+L L + G + S YG +DQ AR+
Sbjct: 283 LLHLLQDRTHQFHETASTHSTIVFAATKHHVEYLAQLISQAGFQVSYVYGTLDQVARRNQ 342
Query: 309 VSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFS 368
V+RFR T L+VTDVAARGIDIPLL NVIN+DFPP+PK+FVHRVGR ARAGR G A+S
Sbjct: 343 VARFRTGDTSILVVTDVAARGIDIPLLSNVINYDFPPQPKVFVHRVGRTARAGRRGWAYS 402
Query: 369 FVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVI 428
FV +ED YLLDL LFL K +++L G D A + I G Q +
Sbjct: 403 FVRAEDAPYLLDLQLFLGK---------KLVLSKSGSAEGFDFA---SDIIVGSLLQDSV 450
Query: 429 DLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPRE----GLHP 484
+ + V ++ +L +L+ +LY KTK S ES +R +++ + +P
Sbjct: 451 ERCMEWVNMLLSKDTELANLKGVSAKGEKLYQKTKTAASVESFKRAREIVAQKGWSTTNP 510
Query: 485 MFKNVLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVH 544
+F + E+ R+ FRP +TI E G+ +K S V+K +RA
Sbjct: 511 LFADNANNAEVERAKMLTRVTNFRPSETIFEI-GQRGLNK------SAAAAVLKTRRA-- 561
Query: 545 EKIINLVHQQRSSKSM----EKEVEPEA----------------------DSLMAKEIKE 578
KI ++R ++ E +EP A DS K
Sbjct: 562 -KIKINPSKRRGGANLSDDDEDTIEPTANDGDRDTEGIEANMDSASDADLDSTFIKPANR 620
Query: 579 THGSKRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEA-----AVLDLVADD 633
K K F D E+++S P+ S+ D+G+ ++ A A +DL DD
Sbjct: 621 RAKKKAKMNNFIDTEHYMSYAPST-------SLAEDRGYSVSSSFAEAARNATMDLTNDD 673
Query: 634 SG-GLQKQKQV--YHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWK 689
G G + + WDK+ KKY++ N E S K++ ESG K+ A+ K+G + WK
Sbjct: 674 GGKGFAEAHRAKGTRWDKKAKKYVQRANDEDGSKGAKMIIGESGQKIAASFKSGRFSAWK 733
>gi|294900795|ref|XP_002777119.1| ATP-dependent RNA helicase dbp-10, putative [Perkinsus marinus ATCC
50983]
gi|239884576|gb|EER08935.1| ATP-dependent RNA helicase dbp-10, putative [Perkinsus marinus ATCC
50983]
Length = 967
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 303/799 (37%), Positives = 430/799 (53%), Gaps = 132/799 (16%)
Query: 18 KKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77
KK G F+++ LS +F+AI++ GY PTPIQRK +P IL G+DVVAMARTGSGKTAAF
Sbjct: 26 KKISGGAFQTMGLSDPLFKAIQKMGYNQPTPIQRKAIPAILGGSDVVAMARTGSGKTAAF 85
Query: 78 LVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF 137
++PM+Q L H G RA+ILSPTR+LA+QT+K T+ LG++TDLR+ L+VGG SMESQF
Sbjct: 86 VIPMIQILKGHSEVVGARAVILSPTRELAMQTIKVTRMLGKFTDLRLCLIVGGHSMESQF 145
Query: 138 EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS 197
+ L+ NPD++I TPGRL+HH+ E D+SL+ V+Y+VFDEAD LF MGFA+ + IL
Sbjct: 146 DRLSSNPDVLICTPGRLVHHMVEA-DLSLQRVQYIVFDEADRLFEMGFADDMQSILKATP 204
Query: 198 ENRQTLLFSATLPSALAEFAKAGLRD--PHLVRLDVDTKISPDLKLAFFTLRQEEKHAAL 255
+RQ LLFSATLPS L +F++AGLR +RLDV+ IS L L F + K AAL
Sbjct: 205 PSRQCLLFSATLPSQLTQFSRAGLRSESTEFIRLDVEHTISDTLDLWFLYTTADSKPAAL 264
Query: 256 LYMIRE--------------------------HISSDQQTLIFVSTKHHVEFLNVLFREE 289
+ ++R+ + +T++FV+T+H+VEF L +
Sbjct: 265 VALLRKLQSMGNKSTGDATGVAGVEGKSKGGKKGARSSKTIVFVATRHNVEFFASLLTQV 324
Query: 290 GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKI 349
G+ + YG MDQ R +S+FR+ K L+VTDVAARGIDIP LD VIN+DFP K+
Sbjct: 325 GISNAPIYGSMDQTQRTSSLSKFRSGKASVLLVTDVAARGIDIPQLDYVINYDFPSSSKL 384
Query: 350 FVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKP--IRAAPSEEEVLLDMDGVMS 407
FVHR GR ARAG G S VT +DM Y ++L LFL + ++A S+ + + DG
Sbjct: 385 FVHRCGRTARAGAKGLCASLVTHDDMPYAVELMLFLGRKLGLQALGSDHPIPAEGDGDDG 444
Query: 408 KIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPS 467
++D+ + G P ++ + VR ++ A+L SLQR+ +A+ LY KT+P S
Sbjct: 445 EVDEKRL---CVIGGIPSVQEEV--ETVRRLVSGDAELASLQRSMMSAYHLYYKTRPAAS 499
Query: 468 KESIRRGKDLPR----------EGLHPMFKNVLEGGELMALAFSER------LKAFRPKQ 511
+S+RR K + R + HP F+ + G E+ L++FRP Q
Sbjct: 500 NQSVRRAKLILRAEAGGPQRLLDTPHPAFRTAADLGSQSVEDMKEKLDMIAQLRSFRPSQ 559
Query: 512 ----------TILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKSME 561
T ++ E A S+H+ P D+ + R ++ HQQ S+ E
Sbjct: 560 QPKSTGTSSTTAIKPETMAEISQHVVAPRKLRHDLKRMSRVRQQQ----EHQQLESQEQE 615
Query: 562 KE---------VEPEADSLMAKEIKETHGSKRKAKTFKDEEYFIS------------SVP 600
E E E + + + + S+R A K +S S+P
Sbjct: 616 DEDSDVEESVTGEGEMEDVQVGQKRPLASSQRAATDDKRTHRMLSKRARRKLEKNGGSLP 675
Query: 601 --------------TNHHMEAGLSV------RSDQGFGLNRLEA---------------- 624
T++H+E G+SV RS+Q F L ++A
Sbjct: 676 QPNEAGLAVGGRKKTSYHLEDGVSVFNQTTCRSNQ-FYLGSVDADQSIEAKEREKQLDIE 734
Query: 625 -AVLDLVADDSGGLQKQKQVYHWDKRGKKYIKL----NNGERVSASGKVVKTESGAKVKA 679
A LDLV DD + K K V WD R KKY+ + + G ++AS K + E+G V
Sbjct: 735 KAQLDLVPDDRESMTKAKSVMRWDARKKKYLPVMVAGDGGAPIAASRK-RRNEAGKLVSG 793
Query: 680 --TKTGIYKKWKERSHKKV 696
K+ IY KW + SHK++
Sbjct: 794 EMEKSDIYSKWLKSSHKRI 812
>gi|358058122|dbj|GAA96101.1| hypothetical protein E5Q_02762 [Mixia osmundae IAM 14324]
Length = 928
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 305/850 (35%), Positives = 462/850 (54%), Gaps = 134/850 (15%)
Query: 17 KKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGA--DVVAMARTGSGKT 74
KK G F+S+ + PN+ + I +G+ PTPIQR +P IL+ D+V MARTGSGKT
Sbjct: 96 KKAPGQGSFQSMGIQPNLLKTILMRGFHTPTPIQRAALPSILATPPRDLVGMARTGSGKT 155
Query: 75 AAFLVPMLQRLN-QHVPQGGVRALILSPTRDLALQTLKFTKELGR------YTDLRISLL 127
A+++P++QRL QH + G RAL++ PTR+LALQ LK K+L R LR L+
Sbjct: 156 LAYMIPLIQRLGGQHSQKFGARALVMVPTRELALQVLKVGKDLSRGLKEGDSETLRWGLI 215
Query: 128 VGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAE 187
+GGD +E QF +A NPD+IIATPGRL+H + E+ D+ + SV Y VFDEAD LF MGFA
Sbjct: 216 IGGDGLEEQFGLMASNPDVIIATPGRLLHLIVEM-DLDMSSVAYAVFDEADRLFEMGFAT 274
Query: 188 QLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR 247
QLH+IL +L +RQTLLFSATLP++L EFA+AGL++P LVRLD DTKIS DL++A +++
Sbjct: 275 QLHEILHRLPPSRQTLLFSATLPTSLVEFARAGLQNPKLVRLDADTKISSDLQMAMLSVK 334
Query: 248 QEEKHAALLYMIREHISSDQ-------------------------------------QTL 270
EK AALL ++R+ I Q QTL
Sbjct: 335 PTEKEAALLLLLRDVIGVPQSLNRQNVTDMSTRPKDKTANKKRKFETGKGKVELAPHQTL 394
Query: 271 IFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGI 330
+FV+TKHHVE++++L E G + YG MDQ+AR+ ++ FRA ++ L+VTD+AARGI
Sbjct: 395 VFVATKHHVEYISMLLLEAGYAVASIYGSMDQEARRGQLNNFRAGRSNVLVVTDLAARGI 454
Query: 331 DIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIR 390
DIP+L+NV+N+DFP + F+HRVGR ARAGR G A+S VT+ ++ +LLDL LFL +PI
Sbjct: 455 DIPILENVVNYDFPAGARNFIHRVGRTARAGRPGWAYSLVTTTELPFLLDLELFLGRPIA 514
Query: 391 AAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREI-IDSSADLNSLQ 449
A P ++ +D + + + G P+ +D + + + + S L +L+
Sbjct: 515 ACPLKQTSAERID----------YSSQLVLGTLPRDRLDQEVEHLASVLLGPSVTLQTLK 564
Query: 450 RTCTNAFRLYSKTKPLPSKESIRRGKDLPREG------------LHPMFKNVLEGGELMA 497
R+Y K++P S S RR KD+ + G +HP+F+ V + G A
Sbjct: 565 NVARKGQRMYEKSQPKASAASHRRAKDMSQLGDGLAGAAKEAASMHPVFR-VSDAGSAQA 623
Query: 498 LAFSER------LKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKR-AVHEKIINL 550
+ R L +FRP +T+ E +R K P++Q +M+++R + + +
Sbjct: 624 DEAASRSSLLAALTSFRPAETVFEI---GSRGKT---PAAQ---LMRQRRQTLGKSLARR 674
Query: 551 VHQQRSSKSMEKE------------VEPEADSLMAKEIKETHGSKRKAKTFKDEEYFISS 598
Q + ++E+E +P AD M +++ ET K K+ + D +++
Sbjct: 675 AEQDAQAGALEEEEDDAIDVEDSAPTQPAADEAMIEDVFETAPEKGKS-AYADPSFYMGY 733
Query: 599 VPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQK-QVYHWDKRGKKYIKLN 657
E G S+R + G + D+V D++ + Q+ + WD++ +K++K +
Sbjct: 734 TQAGAADERGYSMREEPGNFAAQARGVTFDIVDDEANPMAPQRASMLRWDRKNRKFVKGD 793
Query: 658 NGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNAEETTSVPGG 716
S + K+VKTESG ++ A+ K G Y W+ + + G+ E + GG
Sbjct: 794 GTG--SDNQKLVKTESGVRLPASFKAGHYDDWRRKQKTSL-----PRVGDQELPSRNMGG 846
Query: 717 ----RHLGG----------NNRKFRGGK-------NQQRSVPNAHV----CSEIKDLDQV 751
RH G N R ++G K + +S N ++K DQ+
Sbjct: 847 AMRYRHKAGPAKEDSSANDNARPYKGKKRFDVKSDTKTKSSGNRRAGHQNAGKLKTPDQI 906
Query: 752 RKERQKKADR 761
RKER +K +R
Sbjct: 907 RKERVQKENR 916
>gi|50291719|ref|XP_448292.1| hypothetical protein [Candida glabrata CBS 138]
gi|74690788|sp|Q6FNA2.1|DBP10_CANGA RecName: Full=ATP-dependent RNA helicase DBP10
gi|49527604|emb|CAG61253.1| unnamed protein product [Candida glabrata]
Length = 969
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 313/876 (35%), Positives = 466/876 (53%), Gaps = 132/876 (15%)
Query: 17 KKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAA 76
K K K G F S LS + I ++G++ PTPIQRKT+PLIL D+V MARTGSGKTAA
Sbjct: 109 KSKHKKGSFASFGLSKLILVNISKRGFRQPTPIQRKTIPLILQNRDIVGMARTGSGKTAA 168
Query: 77 FLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQ 136
F++PM+++L H + G RA+ILSP+R+LA+QT KE R T LR LL GGDS+E Q
Sbjct: 169 FVLPMIEKLKTHSSKIGARAIILSPSRELAMQTHSVFKEFSRGTHLRSVLLTGGDSLEDQ 228
Query: 137 FEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL 196
F + NPD+IIATPGR +H E+ ++ LKSVEY VFDEAD LF MGF EQL+++L L
Sbjct: 229 FGMMMTNPDVIIATPGRFLHLKVEM-NLDLKSVEYAVFDEADRLFEMGFQEQLNELLAAL 287
Query: 197 SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALL 256
+RQTLLFSATLP++L +FAKAGL +P LVRLD ++KIS +L++ F + + +E+ A LL
Sbjct: 288 PSSRQTLLFSATLPTSLVDFAKAGLVNPVLVRLDAESKISDNLEMLFLSTKNDEREANLL 347
Query: 257 YMIREHIS--------------------------------------------------SD 266
Y+++E I S+
Sbjct: 348 YILQEVIKLPLATPEQIKQLNDNKADDSDESAEEDEDKKRRKRKSFNRKAMPKANELPSE 407
Query: 267 QQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVA 326
+ T++FV T+HHVE+L+ L ++ G S YG +DQ ARK + FR T L+VTDVA
Sbjct: 408 KATVVFVPTRHHVEYLSNLLKDCGYLVSYIYGALDQHARKSQLYNFRIGLTSILVVTDVA 467
Query: 327 ARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLS 386
ARG+DIP+L NV+N+ P KIF+HRVGR ARAG G A+S V+ ++ YLLDL LFL
Sbjct: 468 ARGVDIPMLANVVNYSLPASSKIFIHRVGRTARAGNRGWAYSIVSENELPYLLDLELFLG 527
Query: 387 KPIRAAP---------SEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVRE 437
+ I P E+ V D + + + + G P+ I+ +S+
Sbjct: 528 RKILLTPMYEALERLSKEKWVAEGNDETLFQSPKISYTSRMVLGSCPRLDIEALSELYNN 587
Query: 438 IIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVLEGGELMA 497
++ S+ DL+ ++T A +LY +T+ S ES++R K++ G +NVL G L
Sbjct: 588 LMKSNFDLDMAKKTALKAEKLYFRTRTSASPESLKRSKEIISSGWDE--QNVLFGKNLEK 645
Query: 498 L--AFSERLKAFRPKQTILE----AEGEAARSKH--------LQGPSSQWVDVMKKKR-- 541
AF E+L+ R K+T+ E E E A H +Q + + ++++K+R
Sbjct: 646 EKNAFLEKLQNRRNKETVFEFTRNPEDEMANLMHRRRRAIAPIQRKAKERKELLEKERMA 705
Query: 542 ----AVHEKIINLVHQQRSSKSMEKEVEP--EADSLMAKEIKETHGSKRKAKTFKDEEYF 595
A+ ++I+ + E ++ +AD+++A ++ + SK+K KTF+D +F
Sbjct: 706 GLTHALEDEILKGDDAEVGYTVTEDTLKAFEDADTILA---EQENASKKKKKTFRDPNFF 762
Query: 596 ISS-VPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYI 654
+S P N + L + GF +N + DL +DD + KQ WDK+ KKY+
Sbjct: 763 LSHYAPANEIQDKQLELSG--GF-INEAAQSAYDLNSDDKVQVHKQTATVKWDKKRKKYV 819
Query: 655 KLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNAEETTSV 713
+N + + K + ESG K+ A+ ++G + +W ++ K LK +NE + V
Sbjct: 820 NMNGID----NKKYIIGESGQKIAASFRSGKFDEW-SKARKLAPLKTGANESSIPSNLLV 874
Query: 714 PGGRHLGGNNRKFRGGK--------------------NQQRSVPNA-------------- 739
R G + K GK Q++ V +A
Sbjct: 875 DPTRGPGKSGSKLPNGKFKHKLEKAPRLPDKKRDDYHKQKKKVESALERGIAVKGYNNAP 934
Query: 740 HVCSEIKDLDQVRKERQKKADRIAFMKGKTQKGKKF 775
SE+K + Q+RK+R+ K +R A + K +KF
Sbjct: 935 AFKSELKSVAQIRKDRKTKENRHA-KNARPSKKRKF 969
>gi|196009121|ref|XP_002114426.1| hypothetical protein TRIADDRAFT_58231 [Trichoplax adhaerens]
gi|190583445|gb|EDV23516.1| hypothetical protein TRIADDRAFT_58231 [Trichoplax adhaerens]
Length = 616
Score = 470 bits (1210), Expect = e-129, Method: Compositional matrix adjust.
Identities = 255/551 (46%), Positives = 347/551 (62%), Gaps = 85/551 (15%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
R++ +KK KSGGF+S+ LS VF+ + +KGYK+PTPIQRKT+P+I+ G DVVAMARTGSG
Sbjct: 28 RQQNRKKKKSGGFQSMGLSHVVFKGVMKKGYKLPTPIQRKTIPIIVDGRDVVAMARTGSG 87
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTAAFL+PM ++L H Q G RALILSPTR+LA+QT KF KELGR+TDL+ +L++GGD
Sbjct: 88 KTAAFLIPMFEKLKAHSSQSGARALILSPTRELAVQTHKFVKELGRFTDLKTALVLGGDR 147
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
LF MGF EQL +I
Sbjct: 148 -----------------------------------------------LFEMGFHEQLQEI 160
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
+ +L +RQT+LFSATLP L EFA+AGL DP L+RLDV+ K+S +LKLAF+ +R +++
Sbjct: 161 IRRLPSSRQTMLFSATLPKLLVEFARAGLTDPILIRLDVEHKLSENLKLAFYCIRPQDRT 220
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
AALLY++R I S QQTLIFV+T+HH E+L L S YG++DQ ARKI +S+F
Sbjct: 221 AALLYLLRNVIKSKQQTLIFVATRHHAEYLKELLVAAKFAVSCVYGNLDQTARKISISQF 280
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
+KT L+VTDVAARGIDIP+L+NVIN++FP +PK+FVHRVGR ARAGR+GTA+SF+ +
Sbjct: 281 INKKTSILLVTDVAARGIDIPILENVINYNFPAQPKLFVHRVGRVARAGRSGTAYSFLAN 340
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANG--ETIYGRFPQTVIDL 430
+++ YL+DLHLFL +P+R A D AN I G PQ +ID
Sbjct: 341 DELPYLIDLHLFLGRPLRFAG----------------DTTAANDPENGITGAIPQEIIDR 384
Query: 431 VSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGL--HPMFKN 488
D ++ + S+DL SL + NA++ Y K +PLPS S++R KD+ + HPMF++
Sbjct: 385 EEDFLQTLQIFSSDLPSLSKVALNAYKNYLKCRPLPSTASVKRAKDINFSEIVAHPMFES 444
Query: 489 VLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKR----AVH 544
+ + F +K+F PKQTI E + +KH S+ +VM+ KR A H
Sbjct: 445 --DESQTTKAKFLTEIKSFTPKQTIFEI---STGTKH-----SKAAEVMRSKRLKLSAFH 494
Query: 545 EKI----INLV 551
++ +NL+
Sbjct: 495 NQVGKVELNLI 505
>gi|195429198|ref|XP_002062651.1| GK17652 [Drosophila willistoni]
gi|194158736|gb|EDW73637.1| GK17652 [Drosophila willistoni]
Length = 782
Score = 469 bits (1208), Expect = e-129, Method: Compositional matrix adjust.
Identities = 301/833 (36%), Positives = 452/833 (54%), Gaps = 125/833 (15%)
Query: 28 LNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQ 87
+ L+ ++ + I ++GYKVPTPIQRKT+P+IL G DVVAMA+TGSGKTA FL+P+ +RL +
Sbjct: 1 MGLNQDLVKGITKRGYKVPTPIQRKTIPMILEGRDVVAMAKTGSGKTACFLIPLFERLQR 60
Query: 88 HVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDII 147
P G RALILSPTR+LA+QT KF KELGR+ +L+ L++GGDSM+SQF + PD+I
Sbjct: 61 REPTKGARALILSPTRELAVQTYKFIKELGRFMELKTILVLGGDSMDSQFSAIHTCPDVI 120
Query: 148 IATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSA 207
+ATPGR +H E+ D+ L S+EYVVFDEAD LF MGF EQL++ L +L +RQ ++FSA
Sbjct: 121 VATPGRFLHLCVEM-DLKLNSIEYVVFDEADRLFEMGFGEQLNETLHRLPSSRQMVMFSA 179
Query: 208 TLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQ 267
TLP L +FA+AGL DP L+RLDV++K+ L L F R ++++ +L+ +++ I
Sbjct: 180 TLPKLLVDFARAGLSDPVLIRLDVESKLPDSLALKFLYCRPDDRYTSLIVLLKYVIPEKS 239
Query: 268 QTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAA 327
QT++F T+HHVE ++ + + + + Y +D ARKI+ ++F ++K LIVTDVAA
Sbjct: 240 QTVVFAGTQHHVELISFILTQSNISNTSVYSSLDPAARKINTAKFVSKKVSVLIVTDVAA 299
Query: 328 RGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSK 387
RGIDIP LD VIN FP KPK+FVHRVGR ARAGR+GTAFS +++D A+LLDLHLFL++
Sbjct: 300 RGIDIPSLDYVINVHFPGKPKLFVHRVGRCARAGRSGTAFSIFSTDDTAHLLDLHLFLNR 359
Query: 388 PIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNS 447
P ID IA G PQ +++ V E I S +
Sbjct: 360 PF------------------NIDDNIA-----IGTVPQDLLEEEHLTVTE-IKKSHHIAG 395
Query: 448 LQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVLEGGELMA---------- 497
+ RT NA++ Y ++P+ S ++ R K + L P+ ++ ++A
Sbjct: 396 VLRTSENAYKKYLSSRPVASTDANSRVKKIKFFALKPL-EDFFHAVPVLAQAAEVSGQAN 454
Query: 498 ------LAFSER------------LKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKK 539
+A +ER ++ FRP TI E + S+ +V VMK+
Sbjct: 455 ETSKSEVAAAERKLQEKKHDILVQMRNFRPGGTIFEL--------NCTQKSTPFV-VMKE 505
Query: 540 KRAVHEKIINLVHQQRSS------------KSMEKEVEPEADSLMAKEIKETHGSKRK-- 585
KR H + I +QR K +K + +++K KR+
Sbjct: 506 KRLQHSEKIEKFREQRQKEDLSEEQRAIEVKEQQKTTSTVDEDVISKTFNHVVAPKRRQD 565
Query: 586 -------------AKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVAD 632
KD E++I + H E GL++ S + N E +V+D
Sbjct: 566 MDNLYKEKPKKRKKSNVKDTEHYIPYQSADKHTEDGLAINSFERQAQN-AEFSVMD---- 620
Query: 633 DSGGLQKQKQVYH------WDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIY 685
+ Q +V H WD+ KK + + + S K ++TESGA + A+ KTG Y
Sbjct: 621 -----RNQTEVKHKPGLKKWDRIKKKMVSVQDPR----SNK-IRTESGAWIPASFKTGRY 670
Query: 686 KKWKERS--HKKVYLKGASNEGNAE-----ETTSVPGGRHLGGN-----NRKFRGGKNQQ 733
+WKE+S +++ + A NE + + P GRH N ++ GG + +
Sbjct: 671 TEWKEKSKIEEQLQRENAGNEADEDFKPLSHAQRYPVGRHARHNVKIELKKRLTGGNDTE 730
Query: 734 RSVPNAHVCSEIKDLDQVRKERQKKADRIAFMKGKTQKGKKFSKNGKRGKPRK 786
P V S ++ L+ ++K + A+R A + ++ + + + + K RK
Sbjct: 731 MRRPEQIVKSRMR-LEFIKKRNEDNAERKAENRKRSMRKSQRPQMKNKAKKRK 782
>gi|403414414|emb|CCM01114.1| predicted protein [Fibroporia radiculosa]
Length = 960
Score = 469 bits (1208), Expect = e-129, Method: Compositional matrix adjust.
Identities = 310/834 (37%), Positives = 451/834 (54%), Gaps = 145/834 (17%)
Query: 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGA--DVVAMARTGSGKTAAFLVP 80
G F+S+ + P + R++ +G+++PTPIQR ++P +LS D+V MARTGSGK+ A++VP
Sbjct: 98 GSFQSMGIHPWLLRSLTLQGFRIPTPIQRLSIPALLSNPPRDLVGMARTGSGKSLAYMVP 157
Query: 81 MLQRLN-QHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD------------------ 121
++QRL +H G RALIL P R+LALQ LK KEL R +
Sbjct: 158 LVQRLGGRHASTFGARALILLPARELALQILKVGKELARGWNAGEGSHAGDGKDTEDGKR 217
Query: 122 ---LRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178
LR SL+VGG+ M+ QFE ++ NPDIIIATPGRL+H + E+ +M LKSV+YVVFDEAD
Sbjct: 218 GQGLRWSLIVGGEGMDEQFETISHNPDIIIATPGRLLHLIVEM-NMDLKSVQYVVFDEAD 276
Query: 179 CLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPD 238
LF MGF L +IL +L RQTLLFSATLP +L EFAKAGL++P LVRLD ++KISPD
Sbjct: 277 RLFEMGFETALTEILHRLPATRQTLLFSATLPKSLVEFAKAGLQNPKLVRLDAESKISPD 336
Query: 239 LKLAFFTLRQEEKHAALLYMIR----------------------------------EHIS 264
LK++FF+++Q EK A LL ++R E ++
Sbjct: 337 LKMSFFSVKQAEKDACLLVLLRDVIGVPLGSPQAAIDDTSSTQDKKEKGKARLKYSEQVT 396
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
+ QTL+F +TKHHVE+L L G S YG +DQ AR + +FR +T L+VTD
Sbjct: 397 APHQTLVFAATKHHVEYLTNLLTSAGYSVSHIYGSLDQTARTQQMDQFRRGRTNILVVTD 456
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
VAARGIDIP+L+NV+N+DFP ++FVHRVGR ARAGR G A+SFVT+ ++ YLLDL LF
Sbjct: 457 VAARGIDIPVLENVVNYDFPQGARVFVHRVGRTARAGRQGWAWSFVTNSELPYLLDLQLF 516
Query: 385 LSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSAD 444
L PI+ S DG DQA + G F + +D + +R++ + + +
Sbjct: 517 LGHPIKNEVS--------DGG----DQAYTE-SFVLGPFDRDQLDEEVEYIRKLENDNHN 563
Query: 445 LNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPRE----------GLHPMFKNVLEG-- 492
L +L+ +Y ++K S+ S +R K++ +E G+HP+F +G
Sbjct: 564 LTTLRDVMKKGHGMYERSKGKASQVSYKRAKEMIKEGKWGLVGADSGIHPVFFRSKDGSN 623
Query: 493 ------GELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEK 546
GE A + + AF+P +T+LE AR +++ +MK++R K
Sbjct: 624 VSTKLAGEAKRKALLKAVNAFKPLETVLEI---GARG------NTETAALMKQRRKALSK 674
Query: 547 I---------------------INLVHQQRSSKSMEKEVEPEADSLMAKEIKETHGSKRK 585
+ + Q + ME E E ++ + K + G K
Sbjct: 675 AAHRASLASTSAAVLSTEDLDDVEEIGTQVDADGMELADEDEIAAVFDFDKKGSSGGK-- 732
Query: 586 AKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYH 645
F+D E+++S + + E G S+R F + + DL A D G +++++
Sbjct: 733 -NNFRDSEFYMSHYQKDANTEKGYSLRDGATFA-EQAQNVTFDL-AGDEGVRERKRREMQ 789
Query: 646 WDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNE 704
WDK+ K+++K GE + K+V+TESG K+ AT ++G + +WK RS + G
Sbjct: 790 WDKKKKRFVK-GTGEGAD-NVKLVRTESGVKLPATYRSGRFDEWKARSRVSLPKVG---- 843
Query: 705 GNAEETTSVPGGRHLGGNNRKFRGGKNQQRSVPNAHVCSEIKDLDQVRKERQKK 758
EE T G RKF K++Q + P + +D RK RQKK
Sbjct: 844 ---EEETEARG----AAGRRKF---KHKQATAPKPL---DKLSIDYDRKMRQKK 884
>gi|157875861|ref|XP_001686302.1| putative ATP-dependent RNA helicase [Leishmania major strain
Friedlin]
gi|68129376|emb|CAJ07917.1| putative ATP-dependent RNA helicase [Leishmania major strain
Friedlin]
Length = 803
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 291/820 (35%), Positives = 446/820 (54%), Gaps = 95/820 (11%)
Query: 19 KSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78
K K GGF+S NL + AI ++G+ VPTPIQRK +P +L G DVVAMARTGSGKTAAFL
Sbjct: 18 KKKGGGFQSFNLEKPLLDAILKQGFSVPTPIQRKAIPPMLQGNDVVAMARTGSGKTAAFL 77
Query: 79 VPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138
+PML L H G+R L+LSPTR+L+LQ L+ L ++ DLR + LVGGDSM+ QFE
Sbjct: 78 IPMLNTLKAHAKIVGIRGLVLSPTRELSLQILRNGFALNKFLDLRFAALVGGDSMDQQFE 137
Query: 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198
LA NPD+++ATPGRL+H + E + L SV +V DEAD LF +G Q+ I+ +L E
Sbjct: 138 LLASNPDVVVATPGRLLHIMEEA-SLHLTSVRCLVLDEADRLFELGLQPQIGAIMQKLPE 196
Query: 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258
+ Q LFSAT+P+ LAEF AGL +P ++RLD + K+S LK + F +R +EK AAL+ +
Sbjct: 197 SCQRALFSATMPTVLAEFTSAGLHNPVVIRLDSEMKLSDQLKQSAFLVRNDEKVAALIVL 256
Query: 259 IR------EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
++ E ++ Q LIF +K HVEFL ++ + S +G MDQ+AR++ V F
Sbjct: 257 LKRVLHVGEAAANSAQALIFSESKFHVEFLQMILTHYSISTSAVHGQMDQEARRLAVRSF 316
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
R+T ++VTDVAARG+D+PLLDNV+N+ FP PK+FVHRVGR ARAGR+GTA+S +T
Sbjct: 317 AKRETSVMVVTDVAARGLDLPLLDNVVNFSFPFNPKLFVHRVGRVARAGRSGTAYSIMTF 376
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVS 432
ED Y +DL F+ +P+++AP ++L D + YGR P+ I L
Sbjct: 377 EDFPYYVDLMQFIGRPLQSAPVPGDLLFTPD-------------DGCYGRLPEEDIQLEL 423
Query: 433 DRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKD----LPREGLHPMFKN 488
D ++ + ++ ++ ++ R NA + +++TK P+ E+I+ + R LHPM
Sbjct: 424 DFLKRLHENDVEVRNMARVVENAHKKFNRTKKKPTHEAIQEARKPQYAFDRTPLHPMLLE 483
Query: 489 VLEGGELMALAFSERLKAFRPKQTIL--------------EAEGEAARSKHLQGPS---- 530
L + A LK F+PK+ L E ARS + +G +
Sbjct: 484 RLGSTRVRADEVRFDLKRFKPKELFLEIGSKEKLFEIRPPETAQSLARSSNAEGGAKKVG 543
Query: 531 SQWVDVMKKKRAVHEKIINLVHQQR-------SSKSMEKE-------VEPEADSLMAKEI 576
+ K+ + EK++ ++R SS S+ + P +L KE
Sbjct: 544 AASTPPPAKQLSFAEKMLQRAQERRKREHEAGSSTSVNSDDAVMNLVTHPRQAALGHKES 603
Query: 577 KETHGSKRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGG 636
ET ++DE +F+ + A SV+ A +D+ A+ +
Sbjct: 604 METGA-------YRDENFFMDLERRDTLDNAHYSVKD-----------ATMDMTAETAEE 645
Query: 637 LQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVK-ATKTGIYKKWKERSHKK 695
+Q+QV+ W K+ +Y++++ + A + +K E+G + +K Y KW ++S+ +
Sbjct: 646 AAQQRQVFAWSKKKNRYVQMHVND-AKALLRGIKNEAGKAINYKSKLQAYSKWMKKSNMR 704
Query: 696 VYLKGASNE------GNAEETTSVPGGRHLGGNN------------RKFRGGKNQQRSVP 737
+ G + A +S P G +G N +K R G+ Q+R
Sbjct: 705 IQDVGEEEDLVPLKRAKAAAFSSQPQGDDVGNGNDDFVDISDPNQGKKLRIGRKQKRLPK 764
Query: 738 NAHVCSEIKDLDQVRKERQKKADRIAFMKGKTQKGKKFSK 777
+ HV S +++ +R++ +K+ R+A ++ GKK SK
Sbjct: 765 DGHVRS-FEEMAAMRRKAEKEKSRLARKSQRSGAGKKKSK 803
>gi|402082831|gb|EJT77849.1| ATP-dependent RNA helicase DBP10 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 951
Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust.
Identities = 303/775 (39%), Positives = 428/775 (55%), Gaps = 106/775 (13%)
Query: 17 KKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAA 76
K K GGF+++ L+ + +AI RKG+ VPTPIQRK +PLIL DVV MARTGSGKTAA
Sbjct: 84 KSTKKGGGFQAMGLNGILLKAITRKGFSVPTPIQRKAIPLILDRRDVVGMARTGSGKTAA 143
Query: 77 FLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQ 136
F+VPM++RL H + G RALI+SP+R+LALQTLK KELG+ TDL+ LLVGGDS+E Q
Sbjct: 144 FVVPMIERLRAHSARVGARALIMSPSRELALQTLKVVKELGKGTDLKTVLLVGGDSLEDQ 203
Query: 137 FEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL 196
F + NPDIIIATPGR +H E+ + L S+ YVVFDEAD LF MGFA QL +IL L
Sbjct: 204 FGFMTTNPDIIIATPGRFLHLKVEMS-LDLSSIRYVVFDEADRLFEMGFATQLAEILHAL 262
Query: 197 SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALL 256
+RQTLLFSATLP +L EFA+AGL++P LVRLD +TKISPDL+ AFF+++ EK ALL
Sbjct: 263 PPSRQTLLFSATLPRSLVEFARAGLQEPSLVRLDAETKISPDLESAFFSVKGGEKEGALL 322
Query: 257 YMIREHIS----------------------------------SDQQTLIFVSTKHHVEFL 282
+++ + I ++ T+IF +TKHHVE++
Sbjct: 323 HILHDVIKMPTGAPAGLKDESEKAGKKRKRQGPDRPNPKEKPTEHSTIIFTATKHHVEYV 382
Query: 283 NVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWD 342
+ L G S YG +DQ ARKI V FR KT L+VTD+AARGIDIP+L NVIN+D
Sbjct: 383 SALLNHAGFAVSHAYGSLDQTARKIQVDEFRRGKTNILVVTDLAARGIDIPILANVINYD 442
Query: 343 FPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDM 402
F +PK+FVHRVGR ARAG+ G +++ + D YLLDL LFL + R +E
Sbjct: 443 FCDQPKVFVHRVGRTARAGQRGWSYNLICDVDAPYLLDLQLFLGR--RLIVGQE------ 494
Query: 403 DGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKT 462
+ + D + + G + I+ + V + + S D L+ A + + +T
Sbjct: 495 ---IPEGDPPSFASDVVLGALQRWPIETNVEWVNKTLVESYDTQVLRTVAAKAHKQFVRT 551
Query: 463 KPLPSKESIRRGKDL-PREGLHPMFKNVLEG-------GELMALAFSERLKAFRPKQTIL 514
K S S +R ++L +G NVL G E + ++ F+P++T+
Sbjct: 552 KIAASISSAKRARELTASKGWTQT--NVLFGTGPAEDDAEGLRAEMLAKISGFKPQETVF 609
Query: 515 EAEGEAARSKHLQGPSSQWVDVMKK--KRAVHEKIINL----VHQQRSSKSMEKEVE--- 565
E + +G + + +++MKK RA K+ V + +SKS +K +
Sbjct: 610 EI------GRGGKGTNFEAIEIMKKLRVRAPVRKVARGGDVDVAEASASKSRKKSDDSSD 663
Query: 566 -----------------PEADSLMAKE------IKETHGSKRKAKTFKDEEYFISSVP-- 600
P A E + + +K+ A ++KD E+F+S P
Sbjct: 664 GEDDEGDEEEDSVDEEAPFAALESEPESELEVTVSNSADAKKGADSWKDSEHFMSYTPRH 723
Query: 601 TNHHMEAGLSVRSDQGFGLNRLEAA---VLDLVADDSG---GLQKQKQVYHWDKRGKKYI 654
N E G V + G G N LE A +DL D+S G+ + WDK+ KY+
Sbjct: 724 ANVAEERGYGVNTGSG-GANFLEQARHVAMDLANDESSTTFGVPTRAAATRWDKKSGKYV 782
Query: 655 KLNNGERVSASG-KVVKTESGAKVKAT-KTGIYKKWKERSH-KKVYLKGASNEGN 706
+N E S G K+++ ESG K+ A+ ++G + KW++ + K+ G + +GN
Sbjct: 783 ARHNDEDGSRGGSKMIRGESGVKIAASFQSGRFDKWRQANRLGKLPRVGEAEKGN 837
>gi|320593114|gb|EFX05523.1| ATP dependent RNA helicase [Grosmannia clavigera kw1407]
Length = 956
Score = 466 bits (1199), Expect = e-128, Method: Compositional matrix adjust.
Identities = 291/777 (37%), Positives = 423/777 (54%), Gaps = 125/777 (16%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF++L L+ N+ RAI RKG+ VPTPIQRKT+PLI+ DVV MARTGSGKTAAF++P
Sbjct: 107 KGGGFQALGLNANLLRAITRKGFSVPTPIQRKTIPLIMGRRDVVGMARTGSGKTAAFVIP 166
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
M++RL H + G RAL+LSP+R+LALQTLK KELG+ TDL+ LLVGGDS+E QF +
Sbjct: 167 MIERLRAHSARVGARALVLSPSRELALQTLKVVKELGKGTDLKTILLVGGDSLEEQFGLV 226
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
A NPDI+IATPGR +H E+ + L SV YVVFDEAD LF MGFA QL +IL L +R
Sbjct: 227 ASNPDIVIATPGRFLHLKVEMS-LDLSSVRYVVFDEADRLFEMGFAAQLTEILHALPPSR 285
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSATLPS L EFA+AGL+DP LVRLD +TKISPDL+ AFF+++ EK ALL+++
Sbjct: 286 QTLLFSATLPSTLVEFARAGLQDPSLVRLDAETKISPDLQSAFFSVKGSEKEGALLHLLH 345
Query: 261 EHIS--------------------------------------SDQQTLIFVSTKHHVEFL 282
+ I ++ T++F +TKHHVE++
Sbjct: 346 DVIGMPLGQPAGPAEAAEGQFADEGSKKRKRDASRVSFREKPTEHSTIVFAATKHHVEYV 405
Query: 283 NVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWD 342
+ RE G S YG +DQ ARK+HV FR +T L+VTD+AARGIDIP+L NVIN+D
Sbjct: 406 AAVLREAGFAVSYVYGSLDQTARKMHVDDFRRGRTNILVVTDLAARGIDIPVLANVINYD 465
Query: 343 FPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDM 402
FPP+ K+FVHRVGR ARAG+ G ++S V D YL+DL LFL + R E
Sbjct: 466 FPPQAKVFVHRVGRTARAGQRGWSYSLVQDTDAPYLVDLQLFLGR--RLVVGRE------ 517
Query: 403 DGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKT 462
V + + + G ++ ++ + V ++ D+ L+ A R Y +T
Sbjct: 518 --VAAGAAAPDMGQDVVVGSLARSAVEPHVEWVNTLLSDVTDVEVLRTVTVKAQRQYYRT 575
Query: 463 KPLPSKESIRRGKDL---PREG-LHPMFKNVLEG-------GELMALAFSERLKAFRPKQ 511
+ S +S RR +++ P G LH +F GE A + ++ ++P +
Sbjct: 576 RLSASSQSARRAREMVAGPGWGQLHVLFAADDADTAASGTTGETRAEMLA-KITGYKPVE 634
Query: 512 TILEAEGEAARSKHLQGPSSQWVDVMKKK---------------------RAVHEKIINL 550
+I E + + K + ++ + M+KK V +K +
Sbjct: 635 SIFEVSMQGGK-KATKSEAAVIMRTMRKKLGPRKTAAKAEEGDEGDEEDEVDVADKTAGM 693
Query: 551 VHQQRSSKSMEKEVEPEADSLMAKEIKET----HGSKRKAKTFKDEEYFISSVPTNHHME 606
+ S + E E + DS + + ++ + T+ D+ +++ P
Sbjct: 694 DLSKFDSDAEEDVGEVDMDSDLDSDTEQVTVADDATHSGGPTWLDKSVYMTYTPRTG--- 750
Query: 607 AGLSVRS--DQGFGLNRLEA--------------AVLDLVADDSG---GLQKQKQVYHWD 647
+S R+ ++G+G++ A A +DL D++ G+ + ++ WD
Sbjct: 751 GSISRRAAEERGYGVHATGADEAGSLSFAAAARDATMDLTNDETAKAFGVPTRSKM-RWD 809
Query: 648 KRGKKYIKLNN---GERVSASG-----------KVVKTESGAKVKAT-KTGIYKKWK 689
K+ KY+ N G R ASG ++++ ESG K+ A+ ++G + KW+
Sbjct: 810 KKQHKYVSRTNDEDGSRAMASGRSGADGAGGGKRMIRGESGVKIAASFRSGRFDKWR 866
>gi|296212991|ref|XP_002753123.1| PREDICTED: ATP-dependent RNA helicase DDX54, partial [Callithrix
jacchus]
Length = 471
Score = 466 bits (1199), Expect = e-128, Method: Compositional matrix adjust.
Identities = 229/385 (59%), Positives = 292/385 (75%), Gaps = 1/385 (0%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
R + KKK KSGGF+S+ LS VF+ I +KGYKVPTPIQRKT+P+IL G DVVAMARTGSG
Sbjct: 86 RAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSG 145
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTA FL+PM +RL H Q G RALILSPTR+LALQTLKFTKELG++T L+ +L++GGD
Sbjct: 146 KTACFLLPMFERLKTHSAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDR 205
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
ME QF L +NPDIIIATPGRL+H E+ ++ L+SVEYVVFDEAD LF MGFAEQL +I
Sbjct: 206 MEDQFAALHENPDIIIATPGRLVHVAVEM-NLKLQSVEYVVFDEADRLFEMGFAEQLQEI 264
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
+ +L QT+LFSATLP L EFA+AGL +P L+RLDVD K++ LK +FF +R++ K
Sbjct: 265 IARLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVDAKLNEQLKTSFFLVREDTKA 324
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
A LL+++R + QT++FV+TKHH E+L L + + + Y +D ARKI++++F
Sbjct: 325 AVLLHLLRNVVRPQDQTVVFVATKHHAEYLTELLTTQRVSCAHIYSALDPTARKINLAKF 384
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
K LIVTD+AARG+DIPLLDNVIN+ FP K K+F+HRVGR ARAGR+GTA+S V
Sbjct: 385 TLGKCSALIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAP 444
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEEE 397
+++ YLLDLHLFL + + A EE
Sbjct: 445 DEIPYLLDLHLFLGRSLTLAQPLEE 469
>gi|402224187|gb|EJU04250.1| DEAD-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 926
Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust.
Identities = 291/749 (38%), Positives = 412/749 (55%), Gaps = 92/749 (12%)
Query: 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGA--DVVAMARTGSGKTAAFLVP 80
G F+S+ L P + RA+ +G+ PTPIQR +P +LS D+V MARTGSGKT A+++P
Sbjct: 109 GSFQSMGLQPQLLRALLLRGFNKPTPIQRLAVPALLSTPPRDLVGMARTGSGKTLAYMIP 168
Query: 81 MLQRLN-QHVPQGGVRALILSPTRDLALQTLKFTKELGR---------------YTDLRI 124
+LQRL +H G RAL+L PTR+LALQ LK K+L R LR
Sbjct: 169 LLQRLGGRHQTTFGARALVLIPTRELALQILKVGKDLSRGWHSGDKQGGEGDKSAVALRW 228
Query: 125 SLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG 184
L+VGG+ M+ QFE + NPD+IIATPGRL+H + E+ ++ LKS+ YVVFDEAD LF G
Sbjct: 229 GLIVGGEGMDEQFEMITNNPDVIIATPGRLLHLVVEM-NLDLKSINYVVFDEADRLFEQG 287
Query: 185 FAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFF 244
FA LH+IL +L RQTLLFSATLPS L EF KAGL+DP VRLD D+K+S DL+LAFF
Sbjct: 288 FATALHEILHRLPSTRQTLLFSATLPSTLVEFTKAGLQDPKFVRLDADSKLSSDLRLAFF 347
Query: 245 TLRQEEKHAALLYMIREHI---------------------SSDQQTLIFVSTKHHVEFLN 283
+RQ EK AAL+ ++RE I ++ QTLIF +TKHHV++L
Sbjct: 348 RVRQAEKDAALMALLREVIKVPLGENEVKESKGKVDPNTAAAPNQTLIFAATKHHVDYLA 407
Query: 284 VLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDF 343
L G S YG +DQ AR + +SRFR +T L+VTDVAARGIDIP+L+NVIN+DF
Sbjct: 408 NLLTAAGYSVSHIYGSLDQAARTLEMSRFRRGQTNLLVVTDVAARGIDIPVLENVINYDF 467
Query: 344 PPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMD 403
P ++FVHRVGR ARAGR G A+S + S D+ YLLDL LFL +P++
Sbjct: 468 PAGSRVFVHRVGRTARAGRKGWAWSLIASTDLPYLLDLQLFLGRPLKG------------ 515
Query: 404 GVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREI-IDSSADLNSLQRTCTNAFRLYSKT 462
+ + + IYG P+ V+D + +R + D L L+ +Y +T
Sbjct: 516 ---TAVGEGTYTTSLIYGTVPRDVLDDEIENIRRLEADRHVHLPGLREVMRRGHGMYERT 572
Query: 463 KPLPSKESIRRGKDLPR-EG---LHPMF-------KNVLEGGELMALAFSERLKAFRPKQ 511
K + S R K L + EG +HP+F + + LMA + +F+P++
Sbjct: 573 KAKANHSSYERAKQLVKSEGEGRIHPIFGRPEQHEASTSKAALLMA------IDSFKPQE 626
Query: 512 TILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKSMEKE-----VEP 566
T+ E +R K + VMK +R K V + + K E + +
Sbjct: 627 TVFEI---GSRGK------TAGATVMKDRRTALSKARQRVSEISTGKDEEDQGDENSGDG 677
Query: 567 EADSLMAKEIKETHGSKRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAV 626
+ D + + +E + + F+D E+++S + E G S+R F L + A
Sbjct: 678 DGDDTLQDDDEEPNLAGPSQGKFQDSEFYMSYYQKDAVTEKGYSLRDGASF-LEQARTAT 736
Query: 627 LDLVADDS-GGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGI 684
DL DD+ Q+ WD++ KK++K GE + K++KTESGA++ T ++G
Sbjct: 737 FDLTNDDALTDRQRHGSQLKWDRKKKKFVK-GTGEGAD-NQKILKTESGARLPITYRSGR 794
Query: 685 YKKWKERSHKKVYLKGASNEGNAEETTSV 713
+ +WK ++ + G + NA T
Sbjct: 795 FDEWKTKTKTSLPRIGEAESENARRATGT 823
>gi|170045492|ref|XP_001850341.1| ATP-dependent RNA helicase DDX54 [Culex quinquefasciatus]
gi|167868515|gb|EDS31898.1| ATP-dependent RNA helicase DDX54 [Culex quinquefasciatus]
Length = 793
Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust.
Identities = 283/791 (35%), Positives = 436/791 (55%), Gaps = 115/791 (14%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+++ L+ V + I + GYKVPTPIQRKT+PLIL G DVVAMA+TGSGKT FL+P+ ++
Sbjct: 40 FQAMGLAMPVLKGILKMGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTGCFLIPLFEK 99
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L Q + G RALILSPTR+LA+QT KF K+LG++ DL+ L++GGDSM++QF + P
Sbjct: 100 LKQREIKKGARALILSPTRELAIQTFKFIKQLGKFMDLKTILVLGGDSMDTQFAAIHTLP 159
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
DII+ATPGR +H E+ D+ L +++Y VFDEAD LF MGF EQL + L +L +RQ +L
Sbjct: 160 DIIVATPGRFLHLCVEM-DLKLSAIKYCVFDEADRLFEMGFGEQLTETLARLPSSRQMVL 218
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSATLP + EFAKAGL +P L+RLDV++KI L L F R +E++A LL +IRE I
Sbjct: 219 FSATLPKVMVEFAKAGLSNPTLIRLDVESKIPETLDLRFIYCRPDERYATLLVLIREVIP 278
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
+ Q ++F T+HHVE +++L + G+ + Y +D ARKI+ ++F +K L+VTD
Sbjct: 279 KNAQIVVFAGTQHHVELISLLLTKSGIPCTHVYSGLDASARKINTAKFTMKKVNVLVVTD 338
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
+AARG+DIP LD V+N FP KPK+F+HRVGR ARAGR+GTA++ +++D+A+++DLH+F
Sbjct: 339 IAARGLDIPTLDYVVNVHFPGKPKLFIHRVGRCARAGRSGTAYNIFSNDDIAHMIDLHMF 398
Query: 385 LSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVID----LVSDRVREIID 440
L++P+ S GR P ++ +V +R++ I
Sbjct: 399 LTRPLDVTDSRN-----------------------MGRAPPEAVESEHQIVLERIKHI-- 433
Query: 441 SSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPM--FKNVLE------- 491
DL + R NA++ Y T+P S S ++ K L + F +E
Sbjct: 434 ---DLATAFRVSNNAYKQYIVTRPAASASSNKKAKRFKISELKVLDEFAAAMEKENEAKK 490
Query: 492 ---------------------------GGELMALAFSERLKAFRPKQTILEAEGEAARSK 524
+ +F ++K++RP+ TI E ++ +
Sbjct: 491 KDKLLGKKAKKQKKALTAKQEEKKPAVDADEFRTSFLAQMKSYRPQTTIFELNPKSNAKR 550
Query: 525 HLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKSMEKEVEPEADSLMAKEIKETHGSKR 584
L +M +KR + I + +R +E+E E A+ +K SK
Sbjct: 551 ML---------IMNEKR--EKDTIKIEKHKRKLAELEEEEE----KKAAQAVKADEESKD 595
Query: 585 KAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVY 644
K KD+E +IS +H E G ++ S N A L ++ D + ++ +++
Sbjct: 596 KKSAVKDDENYISYQAKDHVEEDGYAINSFAKEASN----AELSVIGDTAADQRQHQRLQ 651
Query: 645 HWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASN 703
WD++ KK + + N + +GK ++TE G + A+ KTG Y KWKER+ + N
Sbjct: 652 KWDRKKKKMVNVVNPK----AGK-IRTEHGVWIAASYKTGRYDKWKERTKVDEQERARQN 706
Query: 704 EGNAEETTSVPGGR-----------HLGGNNRKFRGGKNQQRSVPNAHVCSEIKDLDQVR 752
+ + E++ G R H G +N K K ++ + SE++ ++Q+
Sbjct: 707 DSDEEDSF---GARPTVTRMDFPHTHWGRHNAKVAAKKQREGT-------SELRSVEQIA 756
Query: 753 KERQKKADRIA 763
K R K +++A
Sbjct: 757 KTRLDKEEKLA 767
>gi|328708524|ref|XP_001949320.2| PREDICTED: ATP-dependent RNA helicase DDX54-like, partial
[Acyrthosiphon pisum]
Length = 478
Score = 464 bits (1193), Expect = e-127, Method: Compositional matrix adjust.
Identities = 232/472 (49%), Positives = 318/472 (67%), Gaps = 17/472 (3%)
Query: 8 AELKRREKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMA 67
A LK KQK +SGGF+++ LS V + + ++GYKVPTPIQRKT+P+ L DVVAMA
Sbjct: 13 ATLKPEVKQKTGKRSGGFQAMGLSFPVLKGVLKRGYKVPTPIQRKTIPIALENRDVVAMA 72
Query: 68 RTGSGKTAAFLVPMLQRLNQHVPQG--GVRALILSPTRDLALQTLKFTKELGRYTDLRIS 125
RTGSGKTA FL+PM ++L QH G G+RALILSPTR+LA+QTLKF KE+G++T+L+ +
Sbjct: 73 RTGSGKTACFLIPMFEKLTQHTVNGHRGIRALILSPTRELAVQTLKFLKEIGKFTNLKSA 132
Query: 126 LLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGF 185
+++GGD ME+QF + PDI++ATPGR +H E+ + L ++YVVFDEAD LF MGF
Sbjct: 133 VILGGDPMEAQFSTMHSAPDIVVATPGRFLHLCVEMS-LKLPYIQYVVFDEADRLFEMGF 191
Query: 186 AEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFT 245
EQL +I+ +L E RQTLLFSATLP L +FA+AGL DP L+RLDV++KI L L F
Sbjct: 192 GEQLTEIIARLPETRQTLLFSATLPKVLVQFARAGLSDPVLIRLDVESKIPDTLGLGFLN 251
Query: 246 LRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDAR 305
+R EE+ ALL +++ + D T+IF TKHHV+F+++L + + + Y D+D AR
Sbjct: 252 VRPEERDGALLCLLKYVVKPDSMTIIFAPTKHHVDFIHLLLDFQDIPNTFIYSDLDPTAR 311
Query: 306 KIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGT 365
KI+ S+F+ LI TD+AARGIDIP LD VIN+ FP K K+FVHRVGR ARAG+ G
Sbjct: 312 KINASKFQTGSVKTLITTDIAARGIDIPQLDTVINYTFPAKSKLFVHRVGRCARAGKVGQ 371
Query: 366 AFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQ 425
A+S VT ++M YLLDLHLFL +P + D DG ++G PQ
Sbjct: 372 AYSLVTRDEMCYLLDLHLFLGRPFSPVLETPKSDDDTDG--------------LFGIVPQ 417
Query: 426 TVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDL 477
+++ ++ SS D+ + +TCTN ++ Y K++P S +S+RR K +
Sbjct: 418 LLLEEELGQLTSWYTSSIDVINSLKTCTNGYKNYIKSRPGASVDSVRRAKKI 469
>gi|47223591|emb|CAF99200.1| unnamed protein product [Tetraodon nigroviridis]
Length = 532
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 240/476 (50%), Positives = 314/476 (65%), Gaps = 55/476 (11%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
R + KKK KSGGF+S+ LS VF+ + RKGYKVPTPIQRKT+P+IL G DVVAMARTGSG
Sbjct: 27 RAQNKKKKKSGGFQSMGLSFPVFKGVMRKGYKVPTPIQRKTIPVILDGKDVVAMARTGSG 86
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTAAFL+PM +RL Q G RALILSPTR+LALQT+KFTKELG++T L+ +L++GGDS
Sbjct: 87 KTAAFLIPMFERLKAPQAQTGARALILSPTRELALQTMKFTKELGKFTKLKTALILGGDS 146
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
M+ QF L +NPDIII TPGRLMH + E+ ++ L++VEYVVFDEAD LF MGFAEQL +I
Sbjct: 147 MDDQFAALHENPDIIIGTPGRLMHVIKEM-NLKLQNVEYVVFDEADRLFEMGFAEQLQEI 205
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
+ + E RQTLLFSATLP + EFA+AGL +P L+RLDVD+K+S +K
Sbjct: 206 IRRFPETRQTLLFSATLPKVIVEFARAGLTEPVLIRLDVDSKLSDQIK------------ 253
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
L EG+E + Y +DQ ARKI++ +F
Sbjct: 254 --------------------------------LLTSEGVECAYIYSSLDQTARKINIGKF 281
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
RK M L+VTDVAARGIDIPLLDNVIN++FP K K+F+HRVGR RAGR+GTA+S +
Sbjct: 282 VHRKAMVLLVTDVAARGIDIPLLDNVINYNFPSKAKLFLHRVGRVGRAGRSGTAYSMICQ 341
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVS 432
++M ++ DLHLFL +P++ A E ++ + ++GR PQ+++D S
Sbjct: 342 DEMPFVFDLHLFLGRPVQFATPEH--------TKDPFPPFPSDSDGVFGRVPQSILDDES 393
Query: 433 DRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK--DLPREGLHPMF 486
+ ++S DL +L R NA++ Y K++P PS ESIRR K D +HP+
Sbjct: 394 SHLVMAHENSLDLQNLHRVSENAYKQYLKSRPNPSTESIRRVKSTDASSMAVHPLL 449
>gi|426197540|gb|EKV47467.1| hypothetical protein AGABI2DRAFT_118043 [Agaricus bisporus var.
bisporus H97]
Length = 926
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 312/852 (36%), Positives = 466/852 (54%), Gaps = 124/852 (14%)
Query: 9 ELKRREKQKKKSKSGG-FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGA--DVVA 65
+LK ++K K GG F+S+ L P++ R++ +GY+VPTPIQR T+P +L+ D+V
Sbjct: 83 KLKGKQKVVKGEVGGGSFQSMGLHPSLLRSLTLQGYRVPTPIQRSTIPSLLANPPQDLVG 142
Query: 66 MARTGSGKTAAFLVPMLQRLN-QHVPQGGVRALILSPTRDLALQTLKFTKELGR------ 118
MARTGSGK+ A+++P++QRL +H G RALIL PTR+LALQ LK KEL R
Sbjct: 143 MARTGSGKSLAYMIPLVQRLGGRHSTTFGARALILLPTRELALQILKVGKELSRGWNSTS 202
Query: 119 -------------YTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMS 165
+LR L+VGG+ ++ QFE + NPD+IIATPGRL+H + E+ ++
Sbjct: 203 GDHAGDKEGQNSNSQNLRWGLVVGGEGLDEQFEMITNNPDVIIATPGRLLHLIVEM-NLD 261
Query: 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPH 225
LKS+ YVVFDEAD LF MGF L +I+ +L +RQTLLFSATLP +L EFAKAGL +P
Sbjct: 262 LKSINYVVFDEADRLFEMGFETALTEIIHRLPPSRQTLLFSATLPKSLVEFAKAGLENPK 321
Query: 226 LVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR--------EHISSDQ---------- 267
LVRLD D+KIS DLK+AFF+++ EK A LL ++R E+ S DQ
Sbjct: 322 LVRLDADSKISSDLKMAFFSVKNAEKDACLLGLLRDVIKVPMAENTSVDQPEAKDKKKKG 381
Query: 268 ------------QTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRAR 315
QTLIF +TKHHVE+L+ L G S YG +DQ AR + +FR
Sbjct: 382 KADYSNPVTAPHQTLIFTATKHHVEYLSTLLTTIGYSVSHIYGSLDQSARTYQMDQFRRG 441
Query: 316 KTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDM 375
T L+VTDVAARGIDIP+L+NV+N+DFP ++FVHRVGR ARAGR G A+SF+T ++
Sbjct: 442 VTSILVVTDVAARGIDIPVLENVVNYDFPHGGRVFVHRVGRTARAGRQGWAWSFITHTEL 501
Query: 376 AYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRV 435
YLLDL LFL++P+ + V D+ + G F + ID + +
Sbjct: 502 PYLLDLQLFLARPLTSV------------VHESGDRPYTE-SLVLGTFEREKIDEDVEYL 548
Query: 436 REIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPRE----------GLHPM 485
+ + D++ L +L+ +Y ++K S +S +R K++ ++ G+HP+
Sbjct: 549 KSLDDTNHSLPTLREVMKRGHVMYERSKGKASPQSYKRAKEMSKDPKWQLAGSDSGIHPV 608
Query: 486 FKNVLEGGELMALAFSE--------RLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVM 537
+L GG+ S+ + AF P +T+ E + S +M
Sbjct: 609 ---LLRGGDAAEKRKSQDARKTLLKAVNAFTPLETVFEVGNKTG---------SVNAALM 656
Query: 538 KKKR-AVHEKIINLVHQQRSSKSMEKEVEPEADSLMAKEIKETHGSKRKAKTFKDEEYFI 596
K++R A+ + + + + + V E+D MA E K K +F+D+E+++
Sbjct: 657 KQRRKALQKSAAKITARVTEDEDADANVVLESDLEMADEEDIASVFKTKGNSFRDDEFYM 716
Query: 597 SSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKL 656
S + E G S++ + + DL DD+ QK++Q+ WDK+ KK++K
Sbjct: 717 SHYQKDALTEKGYSLKDGASSFAQQAQGVSFDLAGDDTVQKQKKRQL-SWDKKKKKFVK- 774
Query: 657 NNGERVSASG-KVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNAEETTSVP 714
G+ V A K+VKTE+G ++ A+ ++G +++WK ++ + G E +VP
Sbjct: 775 --GDGVGADNVKLVKTENGVRLPASYRSGRFEEWKAKNRFSLPRVGEV-ESQGIGKRNVP 831
Query: 715 GGRHLGGNNRKFRGGKNQQRSVPNAHVCSEIKDLDQVRKERQKKADRIAFMKGKTQKGKK 774
GG RKFR + Q S P K LD+ K+ ++KA ++ K + +
Sbjct: 832 GG-------RKFR---HNQTSTP--------KPLDKFGKDYERKARQME-KKNAAAESSE 872
Query: 775 FSKNGKRGKPRK 786
KN K G+P +
Sbjct: 873 PEKNKKGGRPSR 884
>gi|195011457|ref|XP_001983158.1| GH15746 [Drosophila grimshawi]
gi|193896640|gb|EDV95506.1| GH15746 [Drosophila grimshawi]
Length = 786
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 293/778 (37%), Positives = 427/778 (54%), Gaps = 124/778 (15%)
Query: 28 LNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQ 87
+ L + + I ++GYKVPTPIQRKT+PLIL G DVVAMA+TGSGKTA FL+P+ ++L +
Sbjct: 1 MGLGFELLKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEKLQR 60
Query: 88 HVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDII 147
P G RALILSPTR+LA+QT KF KELGR+ +L+ L++GGDSM+SQF + PD+I
Sbjct: 61 REPTKGARALILSPTRELAVQTYKFIKELGRFMELKTILVLGGDSMDSQFSAIHTCPDVI 120
Query: 148 IATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSA 207
+ATPGR +H E+ D+ L S+EYVVFDEAD LF MGF EQL++ L +L +RQ ++FSA
Sbjct: 121 VATPGRFLHLCVEM-DLKLTSIEYVVFDEADRLFEMGFGEQLNETLNRLPASRQMVMFSA 179
Query: 208 TLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQ 267
TLP L EFA+AGL DP L+RLDV++K+ L L F R E++ AL+ +++ I
Sbjct: 180 TLPKLLVEFARAGLSDPVLIRLDVESKLPDALALKFVYCRPEDRFTALVVLLKYVIPQQA 239
Query: 268 QTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAA 327
QT++FV T+HHVE ++ + + G+ + Y +D ARKI+ ++F ++K L+VTDVAA
Sbjct: 240 QTVVFVGTQHHVELISYILSQSGISNTSVYSSLDAAARKINTAKFASKKVSVLVVTDVAA 299
Query: 328 RGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSK 387
RGIDIP LD V+N FP PK+FVHRVGR ARAGRTGTA+S +++D A+LLDLHLFL++
Sbjct: 300 RGIDIPSLDYVVNLHFPGIPKLFVHRVGRCARAGRTGTAYSIFSTDDTAHLLDLHLFLNR 359
Query: 388 PIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREI--IDSSADL 445
P N + G PQ DL+ D + I S +
Sbjct: 360 PFN-----------------------INDSSSIGTIPQ---DLLEDEYLTVTEIKKSHHI 393
Query: 446 NSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPM--FKN---------VLEGGE 494
+ RT NA++ Y ++P S ++ R K + L + F N + G
Sbjct: 394 AGVLRTSENAYKKYLSSRPTASTDANSRAKKIKFFALRALEDFFNAAPVLQQTATISGQG 453
Query: 495 LMAL-----AFSER------------LKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVM 537
L A+ A SER ++ FRP TI E + S +V VM
Sbjct: 454 LNAISKADVAESERKLENEKHDILVKMRNFRPSGTIFEL--------NTTQKSVPFV-VM 504
Query: 538 KKKRAVHEKIINLVHQQRSSKSMEKEVEPEADSLMA--------KEIKETH----GSKRK 585
K+KR+ H ++I QRS + + +E + E ++L + + IK T K++
Sbjct: 505 KEKRSQHAEVIEKYRHQRSKEDIIEE-QKEVNALKSNTSSCADDESIKNTFNKVVAPKKR 563
Query: 586 AKT----------------FKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDL 629
T KDE+ ++ + H E GL++ S + N E +V+D
Sbjct: 564 QNTDDLYTEKSKKKKRKVQTKDEDNYVPYQSADKHTEDGLAINSFERQAQN-AEFSVVD- 621
Query: 630 VADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKW 688
+ ++ + + WD+ KK + + + ++TESGA + A+ KTG Y W
Sbjct: 622 -RNRIEEIKHKPGLKKWDRVKKKMVSVQD-----PHANKIRTESGAWIPASFKTGRYSVW 675
Query: 689 KERSHKKVYLKGASNEGNAEETTS-------VPGGRH------------LGGNNRKFR 727
KE+S + L+ N G+A++ P GRH + GN+++ R
Sbjct: 676 KEKSKIEEQLQ-RENAGSADDNLQPLSHVQRYPVGRHARHNAKLELMKRISGNDKELR 732
>gi|146099084|ref|XP_001468551.1| putative ATP-dependent RNA helicase [Leishmania infantum JPCM5]
gi|134072919|emb|CAM71636.1| putative ATP-dependent RNA helicase [Leishmania infantum JPCM5]
Length = 803
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 291/820 (35%), Positives = 446/820 (54%), Gaps = 95/820 (11%)
Query: 19 KSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78
K K GGF+S NL + AI ++G+ VPTPIQRK +P +L G DVVAMARTGSGKTAAFL
Sbjct: 18 KKKGGGFQSFNLEKPLLDAILKQGFSVPTPIQRKAIPPMLQGNDVVAMARTGSGKTAAFL 77
Query: 79 VPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138
+PML L H G+R L+LSPTR+L+LQ L+ L ++ DLR + LVGGDSM+ QFE
Sbjct: 78 IPMLNTLKAHAKIVGIRGLVLSPTRELSLQILRNGFALNKFLDLRFAALVGGDSMDQQFE 137
Query: 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198
LA NPD+++ATPGRL+H + E + L SV +V DEAD LF +G Q+ I+ +L E
Sbjct: 138 LLASNPDVVVATPGRLLHIMEEA-SLHLTSVRCLVLDEADRLFELGLQPQIGAIMQKLPE 196
Query: 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258
+ Q LFSAT+P+ LAEF AGL +P ++RLD + K+S LK + F +R +EK AAL+ +
Sbjct: 197 SCQRALFSATMPTVLAEFTSAGLHNPVVIRLDSEMKLSDQLKQSAFLVRNDEKVAALIVL 256
Query: 259 IR------EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
++ E +++ Q LIFV +K HVEFL ++ + S +G MDQ+AR++ V F
Sbjct: 257 LKRVLHVGEAAANNAQALIFVESKFHVEFLQMILTHYSISTSAVHGQMDQEARRLAVRSF 316
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
R+T ++VTDVAARG+D+PLLDNV+N+ FP PK+FVHRVGR ARAGR+GTA+S +T
Sbjct: 317 AKRETSVMVVTDVAARGLDLPLLDNVVNFSFPFNPKLFVHRVGRVARAGRSGTAYSIMTF 376
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVS 432
ED Y +DL F+ +P+++AP ++L D NG YGR P+ I L
Sbjct: 377 EDFPYYIDLLQFIGRPLQSAPVPGDLLFTPD-----------NG--CYGRLPEEDIQLEL 423
Query: 433 DRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKD----LPREGLHPMFKN 488
D ++ + ++ ++ S+ R NA + +++TK P+ E+I+ + R LHPM
Sbjct: 424 DFLKRLHENDVEVRSMARVVENAHKKFNRTKKKPTHEAIQEARKPQYAFDRTPLHPMLLE 483
Query: 489 VLEGGELMALAFSERLKAFRPKQTIL--------------EAEGEAARSKHLQGPSSQ-- 532
+ + A LK F+PK+ L E ARS +G +++
Sbjct: 484 RVGSTRVRADEARFDLKRFKPKELFLEIGSKEKLFEIRPPETAQSLARSADAEGGATKRG 543
Query: 533 --WVDVMKKKRAVHEKIINLVHQQR-------SSKSMEKE-------VEPEADSLMAKEI 576
K+ + E+++ ++R SS S+ + +P +L +E
Sbjct: 544 AASAAPPAKQLSFAEQMLQRAQERRKREREVGSSTSVNSDDAVMSLVTQPRQAALGQEES 603
Query: 577 KETHGSKRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGG 636
ET ++DE +F+ L R L+ A +D+ A+ +
Sbjct: 604 METGA-------YRDENFFMD-----------LERRDTLNNAHYSLKDATMDMTAETAEE 645
Query: 637 LQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVK-ATKTGIYKKWKERSHKK 695
+Q+QV+ W K+ +Y++++ + A + VK E+G + +K Y KW ++S+ +
Sbjct: 646 AAQQRQVFAWSKKKNRYVQMHVND-AKALLRGVKNEAGKAINYKSKLQAYSKWMKKSNMR 704
Query: 696 VYLKGASNE------GNAEETTSVPGGRHLG------------GNNRKFRGGKNQQRSVP 737
+ G + A +S P +G +K R G+ Q+R
Sbjct: 705 IQDVGEEEDLVPLKRAKAAALSSQPQDGDVGNGDDDFVDISDPNQGKKLRIGRKQKRLPK 764
Query: 738 NAHVCSEIKDLDQVRKERQKKADRIAFMKGKTQKGKKFSK 777
+ HV S +++ R++ +K+ R+A ++ GKK SK
Sbjct: 765 DGHVRS-FEEMAARRRKAEKEKSRLARKNQRSGSGKKKSK 803
>gi|398022356|ref|XP_003864340.1| ATP-dependent RNA helicase, putative [Leishmania donovani]
gi|322502575|emb|CBZ37658.1| ATP-dependent RNA helicase, putative [Leishmania donovani]
Length = 803
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 291/820 (35%), Positives = 446/820 (54%), Gaps = 95/820 (11%)
Query: 19 KSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78
K K GGF+S NL + AI ++G+ VPTPIQRK +P +L G DVVAMARTGSGKTAAFL
Sbjct: 18 KKKGGGFQSFNLEKPLLDAILKQGFSVPTPIQRKAIPPMLQGNDVVAMARTGSGKTAAFL 77
Query: 79 VPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138
+PML L H G+R L+LSPTR+L+LQ L+ L ++ DLR + LVGGDSM+ QFE
Sbjct: 78 IPMLNTLKAHAKIVGIRGLVLSPTRELSLQILRNGFALNKFLDLRFAALVGGDSMDQQFE 137
Query: 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198
LA NPD+++ATPGRL+H + E + L SV +V DEAD LF +G Q+ I+ +L E
Sbjct: 138 LLASNPDVVVATPGRLLHIMEEA-SLHLTSVRCLVLDEADRLFELGLQPQIGAIMQKLPE 196
Query: 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258
+ Q LFSAT+P+ LAEF AGL +P ++RLD + K+S LK + F +R +EK AAL+ +
Sbjct: 197 SCQRALFSATMPTVLAEFTSAGLHNPVVIRLDSEMKLSDQLKQSAFLVRNDEKVAALIVL 256
Query: 259 IR------EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
++ E +++ Q LIFV +K HVEFL ++ + S +G MDQ+AR++ V F
Sbjct: 257 LKRVLHVGEAAANNAQALIFVESKFHVEFLQMILTHYSISTSAVHGQMDQEARRLAVRSF 316
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
R+T ++VTDVAARG+D+PLLDNV+N+ FP PK+FVHRVGR ARAGR+GTA+S +T
Sbjct: 317 AKRETSVMVVTDVAARGLDLPLLDNVVNFSFPFNPKLFVHRVGRVARAGRSGTAYSIMTF 376
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVS 432
ED Y +DL F+ +P+++AP ++L D NG YGR P+ I L
Sbjct: 377 EDFPYYIDLLQFIGRPLQSAPVPGDLLFTPD-----------NG--CYGRLPEEDIQLEL 423
Query: 433 DRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKD----LPREGLHPMFKN 488
D ++ + ++ ++ S+ R NA + +++TK P+ E+I+ + R LHPM
Sbjct: 424 DFLKRLHENDVEVRSMARVVENAHKKFNRTKKKPTHEAIQEARKPQYAFDRTPLHPMLLE 483
Query: 489 VLEGGELMALAFSERLKAFRPKQTIL--------------EAEGEAARSKHLQGPSSQ-- 532
+ + A LK F+PK+ L E ARS +G +++
Sbjct: 484 RVGSTRVRADEARFDLKRFKPKELFLEIGSKEKLFEIRPPETAQSLARSADAEGGATKRG 543
Query: 533 --WVDVMKKKRAVHEKIINLVHQQR-------SSKSMEKE-------VEPEADSLMAKEI 576
K+ + E+++ ++R SS S+ + +P +L +E
Sbjct: 544 AASAAPPAKQLSFAEQMLQRAQERRKREREVGSSTSVNSDDAVMNLVTQPREAALGQEES 603
Query: 577 KETHGSKRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGG 636
ET ++DE +F+ L R L+ A +D+ A+ +
Sbjct: 604 METGA-------YRDENFFMD-----------LERRDTLNNAHYSLKDATMDMTAETAEE 645
Query: 637 LQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVK-ATKTGIYKKWKERSHKK 695
+Q+QV+ W K+ +Y++++ + A + VK E+G + +K Y KW ++S+ +
Sbjct: 646 AAQQRQVFAWSKKKNRYVQMHVND-AKALLRGVKNEAGKAINYKSKLQAYSKWMKKSNMR 704
Query: 696 VYLKGASNE------GNAEETTSVPGGRHLG------------GNNRKFRGGKNQQRSVP 737
+ G + A +S P +G +K R G+ Q+R
Sbjct: 705 IQDVGEEEDLVPLKRAKAAALSSQPQDGDVGNGDDDFVDISDPNQGKKLRIGRKQKRLPK 764
Query: 738 NAHVCSEIKDLDQVRKERQKKADRIAFMKGKTQKGKKFSK 777
+ HV S +++ R++ +K+ R+A ++ GKK SK
Sbjct: 765 DGHVRS-FEEMAARRRKAEKEKSRLARKNQRSGSGKKKSK 803
>gi|50312293|ref|XP_456179.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74689956|sp|Q6CIR0.1|DBP10_KLULA RecName: Full=ATP-dependent RNA helicase DBP10
gi|49645315|emb|CAG98887.1| KLLA0F24684p [Kluyveromyces lactis]
Length = 973
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 316/885 (35%), Positives = 456/885 (51%), Gaps = 151/885 (17%)
Query: 19 KSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78
K K G F S LS V I +KG++ PTPIQRKT+PLIL D+V MARTGSGKTAAF+
Sbjct: 122 KHKKGSFASFGLSKLVLINISKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFV 181
Query: 79 VPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138
+PM+++L H + GVRA+ILSP+R+LA+QT + KE + +DLR LL GGDS+E QF
Sbjct: 182 LPMIEKLKTHSAKIGVRAVILSPSRELAIQTHRVFKEFSKGSDLRSILLTGGDSLEDQFG 241
Query: 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198
+ NPD++IATPGR +H E+ ++ LKSVEYVVFDEAD LF MGF EQL+++L
Sbjct: 242 MMMGNPDVVIATPGRFLHLKVEM-NLDLKSVEYVVFDEADRLFEMGFQEQLNELLVAFPT 300
Query: 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258
NRQTLLFSATLPS+L +FAKAGL +P LVRLD +TKIS +L++ F +++++E+ A LLY+
Sbjct: 301 NRQTLLFSATLPSSLVDFAKAGLSNPVLVRLDAETKISENLEMLFISIKKDEREANLLYL 360
Query: 259 IREHIS--------------------------------------------------SDQQ 268
++E I S++
Sbjct: 361 LQEAIKMPVATESQIKKLKQQNDADSDSDDSEDEKKKKAKKAKKSKRRLPNANEMPSEKA 420
Query: 269 TLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAAR 328
T++FV T+HHVE++ L + G S YG ++Q ARK + FRA T L+VTDVAAR
Sbjct: 421 TIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQHARKQQLYNFRAGLTSILVVTDVAAR 480
Query: 329 GIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKP 388
G+DIPLL NVIN+ P KIF+HRVGR ARAG G AFS V+ ++ YLLDL LFL K
Sbjct: 481 GVDIPLLANVINYSLPGSSKIFIHRVGRTARAGNRGWAFSIVSENELPYLLDLELFLGKK 540
Query: 389 IRAAPSEE---EVL---LDMDGVMSKIDQAIA-NGETIYGRFPQTVIDLVSDRVREIIDS 441
I P E ++L + +G + D ++ + G P++ ID + D +I S
Sbjct: 541 ILLTPMYESSCQILRKKAESEGNNNFTDPKVSYTTRMVLGACPRSEIDGMGDLYSNMIKS 600
Query: 442 SADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVLEGGELMALAFS 501
+LN+++ A +LY +T+ S ES++R K++ R G + E L F
Sbjct: 601 DFELNTVKGVALKAEKLYFRTRTPASAESMKRSKEILRSGWDEQNIYFGKNAEKEKLDFL 660
Query: 502 ERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKR----------------AVHE 545
+L+ K+T+ E + P + +MK++R E
Sbjct: 661 AKLQHRNNKETVFE---------FARNPDDEMSVLMKRRRRQIAPIQRKAKERQELLEKE 711
Query: 546 KIINLVH--QQRSSKSMEKEVEPEADSLMAKEIKET--------HGSKRKAKTFKDEEYF 595
++I L H + K + EV + KE ++ + K++ KTF+D ++
Sbjct: 712 RMIGLRHSIEDEILKGEDNEVGYSVPDEVLKEFEDADVLLEEQENIKKKQKKTFRDPTFY 771
Query: 596 ISS-VPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYI 654
+S PT+ + L + S GF N A DL DD + KQ WDK+ KKY+
Sbjct: 772 LSHFAPTSDIQDKQLQISS--GF-TNDASNAAFDLANDDKVQVHKQTATVKWDKKRKKYV 828
Query: 655 KLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNE----GNAEE 709
+ + K + ESG K+ A+ ++G ++ W ++ K LK + E N
Sbjct: 829 NTQGLD----NKKYIIGESGQKIPASFRSGKFQDW-SKARKIAPLKVGARESTIPSNLLA 883
Query: 710 TTSVPGGRHLGGNNRKFRGGKNQQRSVPNAH----------------------------V 741
+ P R +GG KF+ + +P+ H +
Sbjct: 884 DPTSPSERTVGG---KFKHKTQKAPKLPDKHRDDYAFQKKKVEAALERGVRVKGYNGPGM 940
Query: 742 CSEIKDLDQVRKERQKKADRIAFMKGKTQKGKKFSKNGKRGKPRK 786
EIK +D++RK R+ K KK SKN + K RK
Sbjct: 941 KQEIKSVDEIRKLREIKE-------------KKRSKNARPTKRRK 972
>gi|392593758|gb|EIW83083.1| ATP-dependent RNA helicase DBP10 [Coniophora puteana RWD-64-598
SS2]
Length = 845
Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust.
Identities = 310/878 (35%), Positives = 464/878 (52%), Gaps = 164/878 (18%)
Query: 28 LNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGA--DVVAMARTGSGKTAAFLVPMLQRL 85
+ L P++ R++ +GY++PTPIQR ++P +L+ D+V MARTGSGKT A+++P++QRL
Sbjct: 1 MGLHPSLLRSLTLQGYRIPTPIQRSSIPSLLASPPRDLVGMARTGSGKTLAYMIPLVQRL 60
Query: 86 N-QHVPQGGVRALILSPTRDLALQTLKFTKELGR-YTD------------------LRIS 125
+H G RALIL+PTR+LALQ L+ KEL R ++D LR
Sbjct: 61 GGRHSTTFGARALILTPTRELALQVLRVGKELARGWSDEGAHAGDQTGSDSTKGQSLRWG 120
Query: 126 LLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGF 185
++VGG+ ++ QFE + NPD+IIATPGRL+H + E+ ++ L+SV+YVVFDEAD LF MGF
Sbjct: 121 MIVGGEGLDEQFEMITNNPDVIIATPGRLLHLIVEM-NLDLRSVQYVVFDEADRLFEMGF 179
Query: 186 AEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFT 245
L++I+ +L +RQTLLFSATLP +L EFAKAGL+DP LVRLD ++KIS DLK+AFF+
Sbjct: 180 ETALNEIIHRLPASRQTLLFSATLPKSLVEFAKAGLQDPKLVRLDAESKISSDLKMAFFS 239
Query: 246 LRQEEKHAALLYMIREHI----------------------------------SSDQQTLI 271
++Q EK A LL ++R+ I ++ QTLI
Sbjct: 240 VKQAEKDACLLALLRDVIHVPLGSEMPQDDKDDTSGGKFRKGKGKQRATQVTTAPHQTLI 299
Query: 272 FVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGID 331
F +TKHHVE+L L G S YG +DQ AR+ + +FR T L+VTDVAARGID
Sbjct: 300 FAATKHHVEYLANLLSSAGYAVSHIYGALDQAARQFQMEQFRRGHTSLLVVTDVAARGID 359
Query: 332 IPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRA 391
IP+L+NV+N+DFP ++FVHRVGR ARAGR G A+SFVT ++ YLLDL LFL +P+
Sbjct: 360 IPVLENVVNYDFPHGARVFVHRVGRTARAGRQGWAWSFVTHTELPYLLDLQLFLGRPLSG 419
Query: 392 -APSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQR 450
PS+ D+A I+G F + ID + VR++ ++ L +L+
Sbjct: 420 EVPSDSG------------DEAYTE-SLIFGPFGREEIDEDVEYVRQLDEAYHQLPTLRD 466
Query: 451 TCTNAFRLYSKTKPLPSKESIRRGKDLPRE-----------GLHPMFKNVLEG-----GE 494
+Y ++K S+ S +R K++ ++ +HP+ V G G
Sbjct: 467 VMKRGHMMYERSKGKASQASYKRAKEMSKDHQWSLAGATEASVHPIL--VQRGWRSAKGS 524
Query: 495 LMALAFSERLK---AFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLV 551
+ A S+ ++ +F P +T+ E H ++ +MK++R +K +
Sbjct: 525 DVEQARSKLMQVVNSFTPSETVFEV-------GHKGKGTTVTSALMKERRKALQKAV--- 574
Query: 552 HQQRSSKSMEKEVEPEADSLMAK------------EIKETHGSKRKA--KTFKDEEYFIS 597
+R+ S V + L+ K EI+ G+ +K F+DEE+++S
Sbjct: 575 --ERAVPSTSTAVVEDTSELVEKAKGISLDMADEDEIEAVFGTSKKGGKDNFRDEEFYMS 632
Query: 598 SVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLN 657
+ + G ++ F + + A DL DD G +Q+ WDK+ K+++K
Sbjct: 633 HYQKDSATDKGYALTDGASF-VEQARGATFDLTGDD-GVAGRQRHQVKWDKKKKRFVK-- 688
Query: 658 NGERVSASG-KVVKTESGAKVKAT-KTGIYKKWKERS----------------------- 692
G+ V A K+VKTESG K+ AT ++G +++WK +S
Sbjct: 689 -GDGVGADNVKMVKTESGVKLPATYRSGRFEEWKAKSKVSLPKIGEAEQDRRPGTGSRKF 747
Query: 693 -HKKV------------YLKGASNEGNAEETT---SVPGGRHLGGNNRKFRGGKNQQRSV 736
H KV Y + AEE + P + N K GK +
Sbjct: 748 RHNKVTEAKPLDQLRSDYDRKVRQSKKAEEANDGPTKPTSKRGSTNGPKGAKGKTRHGGK 807
Query: 737 PNAHVCSEIKDLDQVRKERQKKADRIAFMKGKTQKGKK 774
P V +EIK +DQ+RK+R+ R A T+KG++
Sbjct: 808 PMGRVKNEIKTVDQIRKQRKATEQRKAKNARTTRKGRR 845
>gi|395333010|gb|EJF65388.1| ATP-dependent RNA helicase DBP10 [Dichomitus squalens LYAD-421 SS1]
Length = 962
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 292/775 (37%), Positives = 430/775 (55%), Gaps = 115/775 (14%)
Query: 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGA--DVVAMARTGSGKTAAFLVP 80
G F+S+ L P + R++ +G+++PTPIQR ++P +L+ D+V MARTGSGK+ A+LVP
Sbjct: 97 GSFQSMGLHPWLLRSLTLQGFRIPTPIQRLSIPALLANPPRDLVGMARTGSGKSLAYLVP 156
Query: 81 MLQRLN-QHVPQGGVRALILSPTRDLALQTLKFTKELGRY-------------------- 119
++QRL +H G RALIL P R+LALQ LK KEL R
Sbjct: 157 LVQRLGGRHSATFGARALILLPARELALQILKVGKELARGWHAGEGDHAGDTHDVDEGKK 216
Query: 120 -TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178
LR L+VGG+S++ QFE ++ NPD+IIATPGRL+H + E+ ++ LKSV+YVVFDEAD
Sbjct: 217 GQSLRWGLVVGGESLDEQFEMISNNPDVIIATPGRLLHLIVEM-NLDLKSVQYVVFDEAD 275
Query: 179 CLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPD 238
LF MGF L +IL +L RQ+LLFSATLP +L EFAKAGL++P LVRLD +TKIS D
Sbjct: 276 RLFEMGFQTALTEILHRLPATRQSLLFSATLPKSLVEFAKAGLQNPKLVRLDAETKISAD 335
Query: 239 LKLAFFTLRQEEKHAALLYMIR-------------------------------EHISSDQ 267
LK+AFF+++Q EK A LL ++R EH ++
Sbjct: 336 LKMAFFSVKQAEKDACLLVLLREVIGVPFGNPSTESEEANDKKGKGKAKAKHSEHAAAPH 395
Query: 268 QTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAA 327
QTLIF +TKHHVE+L L G S YG +DQ AR + FR +T L+VTDVAA
Sbjct: 396 QTLIFAATKHHVEYLTNLLAAAGYAVSHIYGSLDQVARTQQMDAFRRGRTNILVVTDVAA 455
Query: 328 RGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSK 387
RGIDIP+L+NV+N+DFP ++FVHRVGR ARAGR G A+SFVT+ ++ YLLDL LFLS+
Sbjct: 456 RGIDIPVLENVVNYDFPQGARVFVHRVGRTARAGRQGWAWSFVTASELPYLLDLQLFLSR 515
Query: 388 PIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNS 447
PI+ + V DQA + G F + +D ++++ + +L++
Sbjct: 516 PIK------------NEVSGAGDQAYTE-SLVLGPFERDKLDEEVAYIQKLDQENHNLST 562
Query: 448 LQRTCTNAFRLYSKTKPLPSKESIRRGKDLPRE----------GLHPMFKNVLEGGELMA 497
L+ +Y ++K S S K++ ++ G+HP+ +L A
Sbjct: 563 LRDVMRKGQGMYERSKGKASPASYHNTKEMLKDGRWGYIGTESGIHPV---LLRRSPDTA 619
Query: 498 LAFSERLK---------AFRPKQTILE--AEGEAARSKHLQ------GPSSQWVDVMKKK 540
+E K +FRP +TILE A G A + ++ ++Q +
Sbjct: 620 AKLAEEAKRRALLKLVDSFRPAETILEIGARGNAETAALMKQRRKALSKAAQRASLASTS 679
Query: 541 RAV---HEKIINLVHQQRSSKSMEKEVEPEADSLMAKEIKETHGSKRKAK----TFKDEE 593
AV + + VH++ S+ E E+ EAD ++ S +KA+ +F+DEE
Sbjct: 680 AAVIVADDGGRDAVHERDDSEGEELEMADEADIAAVFDV-----SNKKARAGKGSFRDEE 734
Query: 594 YFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKY 653
+++S + E G S+R F + DL D++ ++Q++ WDK+ K++
Sbjct: 735 FYMSHYQKDADTEKGYSLRDGASFA-EQARNVAFDLTGDETSAQERQRRENKWDKKKKRF 793
Query: 654 IKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNA 707
++ GE + K+VKTESG K+ T ++G + +WK ++H + G + NA
Sbjct: 794 VR-GTGEGAD-NVKLVKTESGVKLPVTYRSGRFDEWKAKTHMSLPKVGEAEPENA 846
>gi|409080625|gb|EKM80985.1| hypothetical protein AGABI1DRAFT_127033 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 926
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 309/849 (36%), Positives = 462/849 (54%), Gaps = 118/849 (13%)
Query: 9 ELKRREKQKKKSKSGG-FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGA--DVVA 65
+LK ++K K GG F+S+ L P++ R++ +GY+VPTPIQR T+P +L+ D+V
Sbjct: 83 KLKGKQKVVKGEVGGGSFQSMGLHPSLLRSLTLQGYRVPTPIQRSTIPSLLANPPQDLVG 142
Query: 66 MARTGSGKTAAFLVPMLQRLN-QHVPQGGVRALILSPTRDLALQTLKFTKELGR------ 118
MARTGSGK+ A+++P++QRL +H G RALIL PTR+LALQ LK KEL R
Sbjct: 143 MARTGSGKSLAYMIPLVQRLGGRHSTTFGARALILLPTRELALQILKVGKELSRGWNSTS 202
Query: 119 -------------YTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMS 165
+LR L+VGG+ ++ QFE + NPD+IIATPGRL+H + E+ ++
Sbjct: 203 GDHAGDKEGQNSNSQNLRWGLVVGGEGLDEQFEMITNNPDVIIATPGRLLHLIVEM-NLD 261
Query: 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPH 225
LKS+ YVVFDEAD LF MGF L +I+ +L +RQTLLFSATLP +L EFAKAGL +P
Sbjct: 262 LKSINYVVFDEADRLFEMGFETALTEIIHRLPPSRQTLLFSATLPKSLVEFAKAGLENPK 321
Query: 226 LVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR--------EHISSDQ---------- 267
LVRLD D+KIS DLK+AFF+++ EK A LL ++R E+ S DQ
Sbjct: 322 LVRLDADSKISSDLKMAFFSVKNAEKDACLLGLLRDVIKIPMAENTSVDQPEAKDKKKKG 381
Query: 268 ------------QTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRAR 315
QTLIF +TKHHVE+L+ L G S YG +DQ AR + +FR
Sbjct: 382 KADYSNPVTAPHQTLIFTATKHHVEYLSTLLTTIGYSVSHIYGSLDQSARTYQMDQFRRG 441
Query: 316 KTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDM 375
T L+VTDVAARGIDIP+L+NV+N+DFP ++FVHRVGR ARAGR G A+SF+T ++
Sbjct: 442 VTNILVVTDVAARGIDIPVLENVVNYDFPHGGRVFVHRVGRTARAGRQGWAWSFITHTEL 501
Query: 376 AYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRV 435
YLLDL LFL++P+ + V D+ + G F + ID + +
Sbjct: 502 PYLLDLQLFLARPLTSV------------VHESGDRPYTE-SLVLGTFEREKIDEDVEYL 548
Query: 436 REIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPRE----------GLHPM 485
+ + D++ L +L+ +Y ++K S +S +R K++ ++ G+HP+
Sbjct: 549 KSLDDANHSLPTLREVMKRGHVMYERSKGKASPQSYKRAKEMSKDPKWQLAGSDSGIHPV 608
Query: 486 FKNVLEGGELMALAFSER-----LKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKK 540
+ E L + + + AF P +T+ E + S +MK++
Sbjct: 609 LLRGGDAAEKRKLQDARKTLLKAVNAFTPLETVFEVGNKTG---------SVNAALMKQR 659
Query: 541 R-AVHEKIINLVHQQRSSKSMEKEVEPEADSLMAKEIKETHGSKRKAKTFKDEEYFISSV 599
R A+ + + + + + V E+D MA E K K +F+D+E+++S
Sbjct: 660 RKALQKSAAKVTARVTEDEDADANVVLESDLEMADEEDIASVFKTKGNSFRDDEFYMSHY 719
Query: 600 PTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNG 659
+ E G S++ + + DL DD+ QK++Q+ WDK+ KK+IK G
Sbjct: 720 QKDALTEKGYSLKDGASSFAQQAQGVSFDLAGDDTVQKQKKRQL-SWDKKKKKFIK---G 775
Query: 660 ERVSASG-KVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNAEETTSVPGGR 717
+ V A K+VKTE+G ++ A+ ++G +++WK ++ + G E + PGG
Sbjct: 776 DGVGADNVKLVKTENGVRLPASYRSGRFEEWKAKNRFSLPRVGEV-ESQGIGKRNAPGG- 833
Query: 718 HLGGNNRKFRGGKNQQRSVPNAHVCSEIKDLDQVRKERQKKADRIAFMKGKTQKGKKFSK 777
RKFR + Q S P K LD+ K+ ++K ++ K + + K
Sbjct: 834 ------RKFR---HNQTSTP--------KPLDKFGKDYERKVRQME-KKNAAAESSEPEK 875
Query: 778 NGKRGKPRK 786
N K G+P +
Sbjct: 876 NKKGGRPSR 884
>gi|401428549|ref|XP_003878757.1| putative ATP-dependent RNA helicase [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495006|emb|CBZ30309.1| putative ATP-dependent RNA helicase [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 804
Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust.
Identities = 288/815 (35%), Positives = 442/815 (54%), Gaps = 95/815 (11%)
Query: 19 KSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78
K K GGF+S NL + AI ++G+ VPTPIQRK +P +L G DVVAMARTGSGKTAAFL
Sbjct: 18 KKKGGGFQSFNLEKPLLDAILKQGFSVPTPIQRKAIPPMLQGNDVVAMARTGSGKTAAFL 77
Query: 79 VPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138
+PML L H G+R L+LSPTR+L+LQ L+ L ++ DLR + LVGGDSM+ QFE
Sbjct: 78 IPMLNTLKAHSKIVGIRGLVLSPTRELSLQILRNGFALNKFLDLRFAALVGGDSMDQQFE 137
Query: 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198
LA NPDI++ATPGRL+H + E + L SV +V DEAD LF +G Q+ I+ +L E
Sbjct: 138 LLASNPDIVVATPGRLLHIMEEA-SLHLTSVRCLVLDEADRLFELGLQPQIGAIMQKLPE 196
Query: 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258
+ Q LFSAT+P+ LAEF AGL +P ++RLD + K+S LK + F +R +EK AAL+ +
Sbjct: 197 SCQRALFSATMPTVLAEFTSAGLHNPVVIRLDSEMKLSDQLKQSAFLVRNDEKVAALIVL 256
Query: 259 IR------EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
++ E +++ Q LIFV +K HVEFL ++ + S +G MDQ+AR++ V F
Sbjct: 257 LKRVLHVGEAAANNAQALIFVESKFHVEFLQMILTAYSISTSAVHGQMDQEARRLAVRSF 316
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
R+T ++VTDVAARG+D+PLLDNV+N+ FP PK+FVHRVGR ARAGR+GTA+S +T
Sbjct: 317 AKRETSVMVVTDVAARGLDLPLLDNVVNFSFPFNPKLFVHRVGRVARAGRSGTAYSIMTF 376
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVS 432
ED Y +DL F+ +P+++AP ++L D + YGR P+ I L
Sbjct: 377 EDFPYYVDLMQFIGRPLQSAPVPGDLLFTAD-------------DGCYGRLPEEDIQLEL 423
Query: 433 DRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKD----LPREGLHPMFKN 488
D ++ + ++ ++ ++ R NA + +++TK PS E+I+ + R LHPM
Sbjct: 424 DFLKRLHENDVEVRNMARVVQNAHKKFNRTKKKPSHEAIQEARKPQYAFDRTPLHPMLLE 483
Query: 489 VLEGGELMALAFSERLKAFRPKQTILEAEGEA--------------ARSKHLQGP----S 530
L + A LK F+PK+ LE + ARS + +G
Sbjct: 484 RLGSTRVRADEVRFDLKRFKPKELFLEIGSKEKLFEIRPPETAQSLARSANAEGGVKKGG 543
Query: 531 SQWVDVMKKKRAVHEKIINLVHQQR-------SSKSMEKE-------VEPEADSLMAKEI 576
+ V K + E+++ ++R SS S+ + P +L +E
Sbjct: 544 AASVAPPAKPLSFAERMLQRAQERRKREREVGSSTSVNSDDAVMNLVTHPRQAALGQEES 603
Query: 577 KETHGSKRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGG 636
E+ ++DE +F+ + A SV+ A +D+ A+ +
Sbjct: 604 MESGA-------YRDENFFMDLERRDTLNNAHYSVKD-----------ATMDMTAETAEE 645
Query: 637 LQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVK-ATKTGIYKKWKERSHKK 695
+Q+QV+ W K+ +Y++++ + A + VK ESG + +K Y KW ++S+ +
Sbjct: 646 AAQQRQVFAWSKKKNRYVQMHVND-AKALLRGVKNESGKAINYKSKLQAYSKWTKKSNMR 704
Query: 696 VYLKGASNE------GNAEETTSVPGGRHLG------------GNNRKFRGGKNQQRSVP 737
+ G + A +S P + G +K R G+ Q+R
Sbjct: 705 IQDVGEEEDLVPLKRAKAAALSSQPEDGNDGNGDDDFVDISDPNQGKKLRIGRKQKRLPK 764
Query: 738 NAHVCSEIKDLDQVRKERQKKADRIAFMKGKTQKG 772
+ HV S +++ +R++ +K+ R+ K ++ G
Sbjct: 765 DGHVRS-FEEMAAMRRKAEKEKSRLLRKKQRSGAG 798
>gi|154336403|ref|XP_001564437.1| putative ATP-dependent RNA helicase [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134061472|emb|CAM38500.1| putative ATP-dependent RNA helicase [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 803
Score = 457 bits (1176), Expect = e-125, Method: Compositional matrix adjust.
Identities = 292/815 (35%), Positives = 446/815 (54%), Gaps = 81/815 (9%)
Query: 17 KKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAA 76
K K K GGF+S L + AI +KG+ VPTPIQRK +P +L G DVVAMARTGSGKTAA
Sbjct: 16 KSKKKGGGFQSFGLDKPLLDAILKKGFSVPTPIQRKAIPPMLQGNDVVAMARTGSGKTAA 75
Query: 77 FLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQ 136
FL+PML L H G+R L+LSPTR+L+LQTL L R+ DLR + LVGGDSME Q
Sbjct: 76 FLIPMLNALKAHSKVVGIRGLVLSPTRELSLQTLHNGFALNRFLDLRFAALVGGDSMEQQ 135
Query: 137 FEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL 196
FE LA NPD+++ATPGRL+H + E + L SV +V DEAD LF +G Q+ I+ ++
Sbjct: 136 FELLASNPDVVVATPGRLLHIMEEA-SLHLTSVRCLVLDEADRLFELGLQPQIGAIMQKI 194
Query: 197 SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALL 256
E+ Q LFSAT+PS LAEF AGL +P ++RLD + +S LK + F +R EK AAL+
Sbjct: 195 PESCQRALFSATMPSVLAEFTSAGLHNPVVIRLDSEMTLSDQLKQSAFLVRNGEKVAALI 254
Query: 257 YMIR------EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVS 310
+++ E I ++ Q LIFV +K HVE+L ++ G+ S +G MDQ+AR++ V
Sbjct: 255 VLLKRLLHVGEAIVNNAQALIFVESKFHVEYLQMILTTYGISASAVHGQMDQEARRLAVR 314
Query: 311 RFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFV 370
F R+T ++VTDVAARG+D+PLLDNV+N+ FP PK+FVHRVGR ARAGR+GTA+S +
Sbjct: 315 SFAKRETTVMVVTDVAARGLDLPLLDNVVNFSFPFNPKLFVHRVGRVARAGRSGTAYSLM 374
Query: 371 TSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDL 430
T ED Y +DL F+ +P+++AP ++L D + YGR P+ I L
Sbjct: 375 TFEDFPYYIDLMQFIGRPLQSAPVPGDLLFTPD-------------DGCYGRLPEEDIQL 421
Query: 431 VSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKD----LPREGLHPMF 486
D ++ + ++ ++ ++ R +A +++TK + E+I+ + R LHPM
Sbjct: 422 ELDFLKRLHENDVEVRNMARVVEHAHTKFNRTKKKSTHEAIQEARKPQYAFDRTPLHPML 481
Query: 487 KNVLEGGELMALAFSERLKAFRPKQTILE--------AEGEAARSKHLQGPSSQWVDVMK 538
L L A LK F+PK+ LE A A ++ L P+ + K
Sbjct: 482 LERLGSTRLRADEARFDLKRFKPKELFLEMGSKEKLFAICRAETAQSLSRPTKADGEAEK 541
Query: 539 ---KKRAVHEKIINLVHQ--QRSSKSMEKEVE----------PEADSLM-----AKEIKE 578
A +EK ++L + QR+ + ++E E D++M +++
Sbjct: 542 GGAPSAAPNEKKLSLAERMLQRAQERKKREREGGSCSSSNSLHSDDAVMNVVTHSRQAAL 601
Query: 579 THGSKRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQ 638
++ ++D +F+ + A SV+ A +D+ A+ +
Sbjct: 602 GQEESIESGAYRDVNFFMVLERRDTLNNAHYSVKD-----------ATMDITAETAEEAA 650
Query: 639 KQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVK-ATKTGIYKKWKERSHKKVY 697
+Q+QV+ W K+ +Y++++ + A K VK E+G + +K Y KW ++S+ ++
Sbjct: 651 QQRQVFAWSKKKNRYVQMHVND-AKALLKGVKNEAGRAINYKSKLQAYSKWLKKSNMRIQ 709
Query: 698 LKGASNE------GNAEETTSVPGGRHLGGN---------NRKFRGGKNQQRSVPNAHVC 742
G + A +S P G+ +K R G+ Q+R + HV
Sbjct: 710 DVGEEEDLVPLKRAKAAALSSHPQDGEGDGDIVDISDPNQGKKLRVGRKQKRLPKDGHVR 769
Query: 743 SEIKDLDQVRKERQKKADRIAFMKGKTQKGKKFSK 777
S +++ +R++ +K+ +R+A K + GKK K
Sbjct: 770 S-FEEMATMRRKAEKEKNRLARKKQRHDVGKKKGK 803
>gi|150866736|ref|XP_001386424.2| hypothetical protein PICST_80003 [Scheffersomyces stipitis CBS
6054]
gi|158514831|sp|A3LZT3.2|DBP10_PICST RecName: Full=ATP-dependent RNA helicase DBP10
gi|149387992|gb|ABN68395.2| ATP dependent RNA helicase [Scheffersomyces stipitis CBS 6054]
Length = 931
Score = 457 bits (1175), Expect = e-125, Method: Compositional matrix adjust.
Identities = 291/763 (38%), Positives = 417/763 (54%), Gaps = 106/763 (13%)
Query: 16 QKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTA 75
Q KK+K+G F+S LS V I +KGY+ PTPIQRKT+PLI++ DVV MARTGSGKTA
Sbjct: 92 QAKKAKAGSFQSFGLSKLVLTNIAKKGYRQPTPIQRKTIPLIMANRDVVGMARTGSGKTA 151
Query: 76 AFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMES 135
AF +P++++L H + G+RA+ILSP+R+LALQT K KE + +DLR +L GGDS+E
Sbjct: 152 AFTLPVIEKLKGHSARVGIRAIILSPSRELALQTYKQVKEFSKGSDLRAIVLTGGDSLED 211
Query: 136 QFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQ 195
QF + NPDI+IATPGR +H E++ + LK+VEY+VFDEAD LF GFAEQL+++L
Sbjct: 212 QFSSMVSNPDIVIATPGRFLHLQVEMQ-LDLKTVEYIVFDEADHLFEQGFAEQLNELLAV 270
Query: 196 LSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAAL 255
L RQ+LLFSATLP +L +FAKAGL +P LVRLD D+KIS L++AFFT ++ E+ A L
Sbjct: 271 LPPQRQSLLFSATLPRSLVDFAKAGLSNPVLVRLDADSKISDQLQMAFFTTKKNEREANL 330
Query: 256 LYMIREHIS--------------------------------------------------- 264
LY+++E I
Sbjct: 331 LYVLQEVIKMPLGTAEQIKKLRLMDKRVNDEAEEEELENESGSKRKYKFKKERLPSANVL 390
Query: 265 -SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
S T++FV TKHHVE++ L R+ G S YG +DQ ARK + +FR T L+VT
Sbjct: 391 PSPHSTIVFVPTKHHVEYITTLLRDAGYLVSYIYGTLDQHARKNQLYQFRLGMTTVLVVT 450
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHL 383
DVAARGIDIP+L NV+N+ P KIF+HRVGR ARAG G A+S V +++ YLLDL L
Sbjct: 451 DVAARGIDIPVLANVVNYTLPGSSKIFIHRVGRTARAGNKGWAYSIVNEKELPYLLDLEL 510
Query: 384 FLSKPIRAAPSEE---EVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIID 440
FL K I +E ++L D G + + G P+ ++ + ++
Sbjct: 511 FLGKKILLTAMQEQKCQLLKDKQGDNYVEPKVQYTDRLVLGSCPRLSLETFEELYENLLR 570
Query: 441 SSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGL----HPMFKNVLEGGELM 496
+ +L+ ++ +LY +T+ S ES++R K++ G H +F LE +
Sbjct: 571 NHYELSVIKEVAAKGEKLYYRTRKAASTESVKRAKEIMDTGTWDDQHLLFGPNLEKEKEK 630
Query: 497 ALAFSERLKAFRPKQTILEAEGEAA-------------RSKHL---QGPSSQWVDVMKKK 540
LA +L K+T+ E + R K L Q +S+ D+++++
Sbjct: 631 FLA---KLANRHVKETVFEFNKKGNDRDEDSLVSFMHRRRKQLAPIQRRASERRDLLQRE 687
Query: 541 R------AVHEKIINLVHQQRSSKSMEKEVEPEADSLMAKEIKETHGSKRKAKTFKDEEY 594
R + ++I+ + S S +V+ E + A E + SK K ++D+ +
Sbjct: 688 REAGLTHGIEDEILKAHGETGYSASGINDVD-EEELQNAFEDADQLSSKSNKKNYRDDRF 746
Query: 595 FISSVPTNHHMEAGLSVRSDQGFGL-----NRLEAAVLDLVADDSGGLQKQKQVYHWDKR 649
FIS H+ A SV DQ + N +A DL DD G KQV WD++
Sbjct: 747 FIS-----HYAPA--SVIQDQQLNITSSFANEAASATFDLDNDDKIG--NGKQVMQWDRK 797
Query: 650 GKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKER 691
KYI N + S K + ESGAK+ AT ++G + +WK++
Sbjct: 798 KGKYI---NSQ--STDKKFIIGESGAKIPATYRSGKFDEWKKK 835
>gi|449546419|gb|EMD37388.1| hypothetical protein CERSUDRAFT_135966 [Ceriporiopsis subvermispora
B]
Length = 945
Score = 456 bits (1174), Expect = e-125, Method: Compositional matrix adjust.
Identities = 307/847 (36%), Positives = 456/847 (53%), Gaps = 122/847 (14%)
Query: 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGA--DVVAMARTGSGKTAAFLVP 80
G F+S+ L P + R++ +G+++PTPIQR ++P +L+ D+V MARTGSGK+ A+++P
Sbjct: 87 GSFQSMGLHPWLLRSLTLQGFRIPTPIQRLSIPALLANPPRDLVGMARTGSGKSLAYMIP 146
Query: 81 MLQRLN-QHVPQGGVRALILSPTRDLALQTLKFTKELGRY-------------------- 119
++QRL +H G RALIL PTR+LALQ LK KEL R
Sbjct: 147 LIQRLGGRHSSTFGARALILLPTRELALQVLKVGKELARGWHAGEGDHAGDDRTSDDAKK 206
Query: 120 -TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178
LR SL+VGG+ ++ QFE + NPD+IIATPGRL+H + E+ ++ LKS++YVVFDEAD
Sbjct: 207 GQSLRWSLIVGGEGLDEQFEMITNNPDVIIATPGRLLHLIVEM-NLDLKSIQYVVFDEAD 265
Query: 179 CLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPD 238
LF MGF L++I+G+L RQTLLFSATLP +L EFAKAGL++P LVRLD +TKIS D
Sbjct: 266 RLFEMGFETALNEIIGRLPAARQTLLFSATLPKSLVEFAKAGLQNPKLVRLDAETKISSD 325
Query: 239 LKLAFFTLRQEEKHAALLYMIREHI--------------------------------SSD 266
LK++FF++ EK A LL ++R+ I ++
Sbjct: 326 LKMSFFSVGPTEKDACLLILLRDVIGVPLGSQKSTDSVDTSEHKGKGKSKAKSHDVQTAP 385
Query: 267 QQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVA 326
QTLIF +TKHHVE+L + G S YG +DQ AR + RFR T L+VTDVA
Sbjct: 386 HQTLIFAATKHHVEYLTNMLSTAGYAVSHIYGSLDQLARTQQMDRFRRGHTNVLVVTDVA 445
Query: 327 ARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLS 386
ARGIDIP+L+NV+N+DFP ++FVHRVGR ARAGR G A+SF+T+ ++ YLLDL LFL
Sbjct: 446 ARGIDIPVLENVVNYDFPQGARVFVHRVGRTARAGRQGWAWSFITNPELPYLLDLQLFLG 505
Query: 387 KPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLN 446
+PI++ EV D V ++ I G F + +D D +R++ + + +L
Sbjct: 506 RPIKS-----EVTESGDRVYTE--------SLILGPFERDKVDEEVDFIRKLDEKNHNLP 552
Query: 447 SLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPRE----------GLHPMFKNVLEGGELM 496
+++ +Y ++K S S +R K++ +E G HP+F +G +
Sbjct: 553 TMRDVMRKGHGMYERSKGKASPASYKRAKEMMKEGKWGLVGSGSGAHPIFFRNKDGSDAT 612
Query: 497 ALAFSE--------RLKAFRPKQTILE--AEGEAARSKHLQGPSSQWVDVMKKKRAVHEK 546
E + +FRP +T+LE A G A S ++ ++ A
Sbjct: 613 TKISEEARRNTLLRAVNSFRPAETVLEIGARGNAETSALMKQRRIALSKAAQRASAASTS 672
Query: 547 IINLVHQQRSSKSMEKEVEPEADSLMAKE-----IKETHGSKRKA--KTFKDEEYFISSV 599
V + E + + D MA E + + GS +K+ F+D E+++S
Sbjct: 673 AAASVPDAEEEQEEEADHGSDVDMTMANEAEIEAVFDVSGSGKKSGKTNFRDSEFYMSHY 732
Query: 600 PTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNG 659
+ + E G S+R F + + DL A D G +++ HWDK+ KK++K G
Sbjct: 733 QKDANTEKGYSLRDGATFA-EQAQNVTFDL-AGDEGVQNRKRHEMHWDKKKKKFVK-GTG 789
Query: 660 ERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNAEETTSVPGGRH 718
E + K+V+TESGAK+ AT ++G + +WK +S + G + PGGR
Sbjct: 790 EGAD-NVKMVRTESGAKLPATYRSGRFDEWKAKSRVSLPKVGEQESEGPQRRNGGPGGR- 847
Query: 719 LGGNNRKFRGGKNQQRSVPNAHVCSEI-KDLD-QVRKERQKKADRIAFMKGKTQKGKKFS 776
K Q + V ++ KD + +VR+++QK + +G + S
Sbjct: 848 -----------KYQHKQVVAPKPLDKLNKDYERKVRQQKQKAS------QGIESQPPPMS 890
Query: 777 KNGKRGK 783
K+GK+GK
Sbjct: 891 KHGKKGK 897
>gi|367013516|ref|XP_003681258.1| hypothetical protein TDEL_0D04630 [Torulaspora delbrueckii]
gi|359748918|emb|CCE92047.1| hypothetical protein TDEL_0D04630 [Torulaspora delbrueckii]
Length = 968
Score = 456 bits (1173), Expect = e-125, Method: Compositional matrix adjust.
Identities = 308/840 (36%), Positives = 446/840 (53%), Gaps = 100/840 (11%)
Query: 18 KKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77
KK K G F S LS + I RKG+ PTPIQRKT+PLIL D+V +ARTGSGKTAAF
Sbjct: 109 KKHKKGSFPSFGLSKLILNNISRKGFHQPTPIQRKTIPLILQSRDIVGLARTGSGKTAAF 168
Query: 78 LVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF 137
++PM+++L H + G RA+ILSP+R+LA+QT K K+ R T LR LL GGDS+E QF
Sbjct: 169 ILPMIEKLKSHSSKVGARAVILSPSRELAMQTHKVFKDFSRGTHLRSVLLTGGDSLEEQF 228
Query: 138 EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS 197
+ NPD+I+ATPGR +H E+ ++ LKS+EY VFDE+D LF MGF EQL+++L L
Sbjct: 229 GMMMSNPDVIVATPGRFLHLKVEM-NLDLKSIEYAVFDESDRLFEMGFEEQLNELLAALP 287
Query: 198 ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLY 257
NRQTLLFSATLP++L +FAKAGL +P LVRLD ++KIS +L++ F + + +E+ AALLY
Sbjct: 288 SNRQTLLFSATLPNSLVDFAKAGLTNPVLVRLDQESKISENLEMLFLSTKHDEREAALLY 347
Query: 258 MIRE----------------------------------------------------HISS 265
+I+E + S
Sbjct: 348 LIQEVIQIPLATEEQIKLIKDKSPDSDEESDDDNGKRSHNKHKKEKFKKVRMPAANQLPS 407
Query: 266 DQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV 325
++ T++FV T+HHVE++ L + G S YG +DQ AR + FRA T L+VTDV
Sbjct: 408 EKSTILFVPTRHHVEYIANLLKNCGYLVSYIYGSLDQRARNRQLYNFRAGLTSILVVTDV 467
Query: 326 AARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFL 385
AARG+DIP+L NVIN+ FP KIFVHRVGR ARAG G A+S ++ ++ YLLDL LFL
Sbjct: 468 AARGVDIPMLANVINFSFPSSSKIFVHRVGRTARAGNRGWAYSIISESELPYLLDLELFL 527
Query: 386 SKPIRAAPSEEEV--LLD-------MDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVR 436
K I P E LL+ + ++ K + + G P+ ID + D +
Sbjct: 528 GKKILTTPMYEAATDLLEKRWVEEGKEKILFKAPKPSYTNRLVLGSCPRLDIDSMGDLYK 587
Query: 437 EIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVLEGGEL- 495
++ SS +L +L+ A +LY +T+ S ES++R ++L G +NV+ G L
Sbjct: 588 NLM-SSFELETLRGVAKKAEKLYLRTRTAASVESVKRSRELMTSGWDE--QNVMFGKNLE 644
Query: 496 -MALAFSERLKAFRPKQTILE-AEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQ 553
L F +L+ K+T+ E A + L V + +K ++++ L
Sbjct: 645 KEKLDFLAKLQDRTNKETVFEFARNADDETSMLMKKRRFQVAPITEKAKKRKELLELQKA 704
Query: 554 QRSSKSME----------KEVEPE--------ADSLMAKEIKETHGSKRKAKTFKDEEYF 595
S +ME KE PE AD L+ E +E G ++K+K+F+D +F
Sbjct: 705 AGFSHAMEDELLNDNELIKESVPEEVLQEFEDADKLL--EDQEKLG-RKKSKSFRDPNFF 761
Query: 596 ISS-VPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYI 654
+S P E L++ S GF + +AA D+ DD + KQ WD + KKYI
Sbjct: 762 LSHYAPQGGLHENELNLTS--GFTTDAAQAAC-DINGDDKVQVHKQNATVKWDSKKKKYI 818
Query: 655 KLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNAEETTSV 713
+ + K + ESG K+ A+ ++G Y +W + + + GA A
Sbjct: 819 NSQGAD----NKKYIVGESGQKIPASFRSGKYAEWSKARNLQPIKVGARESPTAANMLRN 874
Query: 714 PGGRHLGGNNRKFRGGKNQQRSVPNAHVCSEIKDLDQVRKERQKKA-DRIAFMKGKTQKG 772
P H R GGK + + V + + +D +K++ K+A D+ +KG +G
Sbjct: 875 PAQNHPTDGQRTV-GGKFKHKQVKAPKLPDKHRDDYHKQKKKVKEALDKGINVKGYNTRG 933
>gi|294875674|ref|XP_002767430.1| ATP-dependent RNA helicase dbp10, putative [Perkinsus marinus ATCC
50983]
gi|239868997|gb|EER00148.1| ATP-dependent RNA helicase dbp10, putative [Perkinsus marinus ATCC
50983]
Length = 952
Score = 456 bits (1173), Expect = e-125, Method: Compositional matrix adjust.
Identities = 318/882 (36%), Positives = 452/882 (51%), Gaps = 149/882 (16%)
Query: 18 KKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77
KK G F+++ LS +F+AI++ GY PTPIQRK +P+IL G+DVVAMARTGSGKTAAF
Sbjct: 18 KKISGGAFQTMGLSDPLFKAIQKMGYNQPTPIQRKAIPVILGGSDVVAMARTGSGKTAAF 77
Query: 78 LVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF 137
++PM+Q L H G RA+ILSPTR+LA+QT+K T+ LG++TDLR+ L+VGG SMESQF
Sbjct: 78 VIPMIQTLKGHSEVVGARAVILSPTRELAMQTIKVTRMLGKFTDLRLCLIVGGHSMESQF 137
Query: 138 EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS 197
+ L+ NPD++I TPGRL+HH+ E D+SL+ V+Y+VFDEAD LF MGF++ + IL
Sbjct: 138 DRLSSNPDVLICTPGRLVHHMVEA-DLSLQRVQYIVFDEADRLFEMGFSDDMQTILKATP 196
Query: 198 ENRQTLLFSATLPSALAEFAKAGLR--DPHLVRLDVDTKISPDLKLAFFTLRQEEKHAAL 255
+RQ LLFSATLPS L +F++AGLR +RLDV+ IS L L F + K AAL
Sbjct: 197 PSRQCLLFSATLPSQLTQFSRAGLRSDSTEFIRLDVEHTISDTLDLWFLYTTADSKPAAL 256
Query: 256 LYMIRE-----HISSDQ-----------------QTLIFVSTKHHVEFLNVLFREEGLEP 293
+ ++R+ + ++D +T++FV+T+H+VEF L + G+
Sbjct: 257 ISLLRKLQSMGNANADSSTAVVAAGKGGKKARSPKTIVFVATRHNVEFFASLLTQVGITN 316
Query: 294 SVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHR 353
+ YG MDQ R +S+FR+ K L+VTDVAARGIDIP LD VIN+DFP K+FVHR
Sbjct: 317 APIYGSMDQTQRTSSLSKFRSGKASVLLVTDVAARGIDIPQLDYVINYDFPSSSKLFVHR 376
Query: 354 VGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIR---------------AAPSEEEV 398
GR ARAG G S VT +DM Y ++L LFL P + P+E EV
Sbjct: 377 CGRTARAGAKGLCASLVTHDDMPYAVELMLFLGMPSQFLGRKLGLQPLGSDHPFPAEGEV 436
Query: 399 LLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRL 458
DGV K + G P ++ + VR ++ A+L SLQR+ +A+ L
Sbjct: 437 --GGDGVDEK-------RLCVIGGIPSVQEEV--ETVRRLVSGDAELASLQRSMMSAYHL 485
Query: 459 YSKTKPLPSKESIRRGKDLPR----------EGLHPMFKNVLEGGELMALAFSERLK--- 505
Y KT+P S +S+RR K + R + HP F+ + G E+L
Sbjct: 486 YYKTRPAASNQSVRRAKLILRAEAGGPQRLLDTPHPAFRTAADLGSQSVEDVKEKLDMIA 545
Query: 506 -----------AFRPKQ--------TILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEK 546
+FRP Q T+++ E A S+H+ P D+ K RA +
Sbjct: 546 QLRRLMFVSGWSFRPSQQPKMAGSTTVIKPETMAEISQHVVAPRQLRHDLKKMSRAKQQ- 604
Query: 547 IINLVHQQRSSKSMEKEVEP------------EADSLMAKEIKETHG-SKRKAKTF---- 589
V + +S + E E A L + ++TH SKR K
Sbjct: 605 ----VEHHKEGESDDSETEELENVEVAQAGEKRALPLPQQADRQTHRLSKRARKKLEKGG 660
Query: 590 ---KDEEYFISSVPTNHHMEAGLSV------RSDQGFGLNRLEA---------------- 624
+ E +++H E G+SV RS++ F L ++A
Sbjct: 661 GLPQPGEEVDGREKSSYHFEEGVSVFNQTTCRSNE-FYLGSVDADPESIEAKEREKQLDI 719
Query: 625 --AVLDLVADDSGGLQKQKQVYHWDKRGKKYIKL----NNGERVSASGKVVKTESGAKVK 678
A LDLV DD + K K V WD + KKY+ + + G +++ + + E+G V
Sbjct: 720 EKAQLDLVPDDRESMTKAKSVMRWDAKKKKYLPVMVAGDGGAPIASRKR--RNEAGKLVS 777
Query: 679 A--TKTGIYKKWKERSHKKVYLKGASNEGNAEETT------SVPGGRHLGGNNRKFRGGK 730
K+ IY KW + SHK++ G + T ++ GG +R G
Sbjct: 778 GEMEKSDIYSKWLKSSHKRIQKVGELEDKQNTAFTAPKKAITIESDHEDGGEDRA--GSA 835
Query: 731 NQQRSVPNAHVCSEIKDLDQVRKERQKKADRIAFMKGKTQKG 772
R V H + + L +K K DR+ G T +G
Sbjct: 836 GGARMVKEFHGEVQKEFLTNKQKRHLAKQDRVMNRVGVTSRG 877
>gi|223590189|sp|A5DLR3.2|DBP10_PICGU RecName: Full=ATP-dependent RNA helicase DBP10
gi|190347777|gb|EDK40116.2| hypothetical protein PGUG_04214 [Meyerozyma guilliermondii ATCC
6260]
Length = 914
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 293/764 (38%), Positives = 425/764 (55%), Gaps = 103/764 (13%)
Query: 16 QKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTA 75
Q K+K+G F S LS + + I +KG+K PTPIQRKT+PL++ DVV MARTGSGKTA
Sbjct: 92 QATKAKAGSFASFGLSKFLLKNIAKKGFKQPTPIQRKTIPLVMESRDVVGMARTGSGKTA 151
Query: 76 AFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMES 135
AF++P++++L H P+ GVRA+ILSP+R+LALQT K KE + TDLR +L+GGDS+E
Sbjct: 152 AFVLPVVEKLKSHSPKVGVRAVILSPSRELALQTFKQVKEFTKGTDLRSIVLIGGDSLED 211
Query: 136 QFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQ 195
QF + NPDI++ATPGR +H E+ ++ LK+VEY+VFDEAD LF MGFAEQL+++L
Sbjct: 212 QFSSMMTNPDILVATPGRFLHLKVEM-NLDLKTVEYIVFDEADRLFEMGFAEQLNELLVA 270
Query: 196 LSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAAL 255
L +RQ+LLFSATLP +L +FAKAGL +P LVRLD +TKIS L++AFFT ++ E+ A L
Sbjct: 271 LPPSRQSLLFSATLPRSLVDFAKAGLSNPVLVRLDAETKISDQLQMAFFTTKRTERDANL 330
Query: 256 LYMIREHIS-----------------------------------------------SDQQ 268
LY++ E I S+
Sbjct: 331 LYILSEVIKMPLATQDQIKKLKELEEGADDDDSDEEKKPKKKKRKLEKPAPANRLPSEHS 390
Query: 269 TLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAAR 328
T++FV TKHHVE++ L R+ G S YG +DQ ARK + +FRA T L+VTDVAAR
Sbjct: 391 TIVFVPTKHHVEYVTTLLRDAGHLVSYIYGTLDQHARKQQLYQFRAAYTNILVVTDVAAR 450
Query: 329 GIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKP 388
GIDIP+L NV+N+ P KIF+HRVGR ARAG G A+S V +++ YLLDL LFL K
Sbjct: 451 GIDIPVLANVVNYTLPGSSKIFIHRVGRTARAGNKGWAYSIVNEKELPYLLDLELFLGKK 510
Query: 389 IRAAP-SEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNS 447
+ E++V + + +S + + + + G P+ I+ + ++ + +L +
Sbjct: 511 VLLTQMHEKKVQICHEKGLSAPEVSYKD-RLVLGSAPRVDIESSQELCDNLLRNHYELRT 569
Query: 448 LQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGL----HPMFKNVLEGGELMALAFSER 503
++ LY +T+ S+ES++R K++ G H +F LE + LA +
Sbjct: 570 IRDVANKGEILYYRTRQPASQESVKRAKEIMDTGAWDDQHLLFGANLEKEKEKFLA---K 626
Query: 504 LKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKII-------NLVHQQRS 556
L + K+T+ E + R + V+ M K+R I L+ ++R
Sbjct: 627 LADRKVKETVFEFRNKGQRDE------DSLVEFMHKRRRQIAPIQRRAKERKQLLEKERM 680
Query: 557 ---SKSMEKEV-----EPEADSLMAKEIKETHG------SKRKAKTFKDEEYFISSVPTN 602
+ +E E+ E D+ ++ E SK+K KT++D ++F+S
Sbjct: 681 AGLTHGIENEILKGDGEVGYDNYNGADLDEVFEDGDEALSKKKRKTYRDPQFFLS----- 735
Query: 603 HHMEAGLSVRSDQGFGL----NRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNN 658
H+ A SV D+ L N AA DL DD Q KQ+ WDK+ KYI N
Sbjct: 736 HYAPA--SVIQDKQLELSSFSNEAAAATYDLDNDDK--TQTNKQIMRWDKKKGKYI---N 788
Query: 659 GERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGA 701
+ S K + ESG K+ AT ++G Y+ W++ + + GA
Sbjct: 789 SQ--STDKKYIIGESGQKIPATYRSGRYEDWRKSRNAQPLRTGA 830
>gi|157121423|ref|XP_001659898.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
gi|108874627|gb|EAT38852.1| AAEL009285-PA [Aedes aegypti]
Length = 784
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 292/803 (36%), Positives = 451/803 (56%), Gaps = 104/803 (12%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+++ LS + +AI + GYKVPTPIQRKT+PLIL G DVVAMA+TGSGKT FL+P+ ++
Sbjct: 40 FQAMGLSMPILKAILKMGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTGCFLIPLFEK 99
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L Q + G RAL+L+PTR+LA+QT KF K+LG++TDL+ L++GGDSM+SQF + P
Sbjct: 100 LKQREIKSGARALVLTPTRELAIQTFKFIKQLGKFTDLKTILVLGGDSMDSQFAAIHTLP 159
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
DII+ATPGR +H E+ D+ L SV+Y VFDEAD LF MGF EQL + L +L E RQ +L
Sbjct: 160 DIIVATPGRFLHLCVEM-DLKLSSVQYCVFDEADRLFEMGFGEQLTETLRRLPEARQMVL 218
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSATLP + +FAKAGL DP L+RLDV++KI L L F R +E++A LL ++RE I
Sbjct: 219 FSATLPKLMVDFAKAGLSDPTLIRLDVESKIPEALDLKFVYCRPDERYATLLILLREVIP 278
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
QT++F T+HHVE ++++ G+ + + +D ARKI+ ++F +K L+VTD
Sbjct: 279 RSAQTVLFAGTQHHVELISLILTRAGIPNTYVFSSLDASARKINTAKFTMKKVNVLVVTD 338
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
+AARG+DIP LD V+N FP KPK+FVHRVGR ARAGR+GTA++ +++D+A+++DLH+F
Sbjct: 339 IAARGLDIPSLDYVVNVHFPGKPKLFVHRVGRCARAGRSGTAYNIFSNDDIAHMIDLHMF 398
Query: 385 LSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVID----LVSDRVREIID 440
L++P+ VL D + G P +++ LV D V+ I
Sbjct: 399 LTRPL--------VLSDARCI---------------GVAPPDMVEAEHQLVLDYVKHI-- 433
Query: 441 SSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPM--FKNVLE------- 491
DL + R NA++ Y T+P S + ++ K L + F V+E
Sbjct: 434 ---DLATAFRISNNAYKQYIVTRPAASASANKKAKQFKIGELQVLEDFGKVMEKLDEDKK 490
Query: 492 -----------------GGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWV 534
+ +F ++K +RP+ TI E + +++ V
Sbjct: 491 ADKQKKADAAQKKQSTVNPDEFRSSFLAQMKNYRPQSTIFELNPKN---------NAKEV 541
Query: 535 DVMKKKRAVHEKIINLVHQQRSSKSMEKEVEPEADSLMAKEI--KETHGSKRKAKTFKDE 592
VM +KR ++ I + ++ K +E E+E E A+ + ++ + K+K K KDE
Sbjct: 542 VVMAEKR--NKDTIKI--EKHKQKQLELELE-EQKKASAENVPDEDEYPKKKKRKPVKDE 596
Query: 593 EYFISSVPTNHHMEAGLSVRSDQGFGLNRL----EAAVLDLVADDSGGLQKQKQVYHWDK 648
E FIS + D G+ +N +A L ++ D + + +++ WD+
Sbjct: 597 ENFISYQSKD--------AVEDDGYAINSFAKEANSAELSVIGDTAADQRSHQRLQKWDR 648
Query: 649 RGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERS---HKKVYLKGASNE 704
+ KK + + N + +GK ++TE G + A+ KTG Y KWKER+ + + S+
Sbjct: 649 KKKKMVNVVNPK----AGK-IRTEHGVWIAASYKTGRYDKWKERTKVDEQMARQRQDSDA 703
Query: 705 GNAEETTSVPG----GRHLGGNNRKFRGGKNQQRSVPNAHVCSEIKDLDQVRKERQKKAD 760
+ EE SV H G +N K K + + +A + ++++KE ++ +
Sbjct: 704 SDGEEAVSVQKHDYPHTHWGRHNAKLDQKKMRDLGLKSADQIVK----ERIQKETKQAKE 759
Query: 761 RIAFMKGKTQKGKKFSKNGKRGK 783
++A ++ +K K K + K
Sbjct: 760 KVARLRNLARKKKTLGKKMAKSK 782
>gi|294899003|ref|XP_002776456.1| ATP-dependent RNA helicase dbp-10, putative [Perkinsus marinus ATCC
50983]
gi|239883447|gb|EER08272.1| ATP-dependent RNA helicase dbp-10, putative [Perkinsus marinus ATCC
50983]
Length = 977
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 298/808 (36%), Positives = 429/808 (53%), Gaps = 139/808 (17%)
Query: 18 KKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77
KK G F+++ LS +F+AI++ GY PTPIQRK +P IL G+DVVAMARTGSGKTAAF
Sbjct: 25 KKISGGAFQTMGLSDPLFKAIQKMGYNQPTPIQRKAIPAILGGSDVVAMARTGSGKTAAF 84
Query: 78 LVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF 137
++PM+Q L H G RA+ILSPTR+LA+QT+K T+ LG++TDLR+ L+VGG SMESQF
Sbjct: 85 VIPMIQILKGHSEVVGARAVILSPTRELAMQTIKVTRMLGKFTDLRLCLIVGGHSMESQF 144
Query: 138 EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS 197
+ L+ NPD++I TPGRL+HH+ E D+SL+ V+Y+VFDEAD LF MGFA+ + IL
Sbjct: 145 DRLSSNPDVLICTPGRLVHHMVEA-DLSLQRVQYIVFDEADRLFEMGFADDMQSILKATP 203
Query: 198 ENRQTLLFSATLPSALAEFAKAGLR--DPHLVRLDVDTKISPDLKLAFFTLRQEEKHAAL 255
+RQ LLFSATLPS L +F++AGLR +RLDV+ IS L L F + K AAL
Sbjct: 204 PSRQCLLFSATLPSQLTQFSRAGLRSESTQFIRLDVEHTISDTLDLWFLYTTADSKPAAL 263
Query: 256 LYMIREHIS--------------------------SDQQTLIFVSTKHHVEFLNVLFREE 289
+ ++R+ S +T++FV+T+H+VEF L +
Sbjct: 264 VALLRKLQSMSNKSTGDATGVAGVEGKSKGGKKGPRSSKTIVFVATRHNVEFFASLLTQV 323
Query: 290 GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKI 349
G+ + YG MDQ R +S+FR+ K L+VTDVAARGIDIP LD VIN+DFP K+
Sbjct: 324 GITNAPIYGSMDQTQRTSSLSKFRSGKASVLLVTDVAARGIDIPQLDYVINYDFPSSSKL 383
Query: 350 FVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKP--IRAAPSEEEVLLDMDGVMS 407
FVHR GR ARAG G S VT +DM Y ++L LFL + ++A S+ + + +G
Sbjct: 384 FVHRCGRTARAGAKGLCASLVTHDDMPYAVELMLFLGRKLGLQALGSDHPIPAEGEGEGE 443
Query: 408 KIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPS 467
++ + + G P ++ + VR ++ A+L SLQR+ +A+ LY KT+P S
Sbjct: 444 VDEKRLC----VIGGIPSVQEEV--ETVRRLVSGDAELASLQRSMMSAYHLYYKTRPAAS 497
Query: 468 KESIRRGKDLPR----------EGLHPMFKNVLEGGELMALAFSERLK------------ 505
+S+RR K + R + HP F+ + G E+L
Sbjct: 498 NQSVRRAKLILRAEAGGPQRLLDTPHPAFRTAADLGSQSVEDMKEKLDMIAQLRTFLSIL 557
Query: 506 -------AFRPKQ----------TILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKII 548
+FRP Q T+++ E A S+H+ P D+ + R V ++
Sbjct: 558 SLLLMPCSFRPSQQPKSTGTSSTTVIKPETMAEISQHVVAPRKLRHDLKRMSR-VRQQQT 616
Query: 549 NLVHQQRSSKSMEKE----VEPEADSLMAKEIKETHGSKRKAKTFKDEEYFIS------- 597
L Q++ + + E E E + + + + S+R A K +S
Sbjct: 617 QLESQEQEDEDSDVEGSVTGEGEMEDVQVGQKRPLASSQRAATDDKQTHRMLSKRARRKL 676
Query: 598 -----SVP--------------TNHHMEAGLSV------RSDQGFGLNRLEA-------- 624
+P T++H+E G+SV RS++ F L ++A
Sbjct: 677 EKNGGCLPQPNEAGLAAGGRKKTSYHLEDGVSVFNQTTCRSNE-FYLGSVDADPESIEAK 735
Query: 625 ----------AVLDLVADDSGGLQKQKQVYHWDKRGKKYIKL----NNGERVSASGKVVK 670
A LDLV DD + K K V WD R KKY+ + + G ++AS K +
Sbjct: 736 EREKQLDIEKAQLDLVPDDRESMTKAKSVMRWDARKKKYLPVMVAGDGGAPIAASRK-RR 794
Query: 671 TESGAKVKA--TKTGIYKKWKERSHKKV 696
E+G V K+ IY KW + SHK++
Sbjct: 795 NEAGKLVSGEMEKSDIYSKWLKSSHKRI 822
>gi|169847756|ref|XP_001830587.1| ATP-dependent RNA helicase DBP10 [Coprinopsis cinerea okayama7#130]
gi|116508323|gb|EAU91218.1| ATP-dependent RNA helicase DBP10 [Coprinopsis cinerea okayama7#130]
Length = 949
Score = 454 bits (1167), Expect = e-124, Method: Compositional matrix adjust.
Identities = 300/868 (34%), Positives = 453/868 (52%), Gaps = 155/868 (17%)
Query: 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGA--DVVAMARTGSGKTAAFLVP 80
G F+S+ L P++ R++ +GY++PTPIQR ++P +L D+V MARTGSGK+ A++VP
Sbjct: 99 GSFQSMGLHPSLLRSLTLQGYRIPTPIQRLSIPALLENPPRDLVGMARTGSGKSLAYMVP 158
Query: 81 MLQRLNQ-HVPQGGVRALILSPTRDLALQTLKFTKELGRY------------------TD 121
++QRL H G RALIL PTR+LA+Q LK KEL R
Sbjct: 159 LVQRLGGIHQTTFGARALILLPTRELAVQILKVGKELARGWHAKGDHAGDKEGESSKGQS 218
Query: 122 LRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181
LR L+VGG+ ++ QFE + NPD+IIATPGRL+H + E+ ++ LKS++YVVFDEAD LF
Sbjct: 219 LRWGLVVGGEGLDEQFEMITNNPDVIIATPGRLLHLVVEM-NLDLKSIQYVVFDEADRLF 277
Query: 182 GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKL 241
MGF ++++L +L +RQT+LFSATLP +L EFAKAGL+DP LVRLD ++KIS DLK+
Sbjct: 278 EMGFETAMNELLHRLPPSRQTILFSATLPKSLVEFAKAGLQDPKLVRLDSESKISSDLKM 337
Query: 242 AFFTLRQEEKHAALLYMIRE--------------------------------HISSDQQT 269
AFF+++Q EK A LL ++R+ H + QT
Sbjct: 338 AFFSVKQAEKEACLLTLLRDVIKVPLGENKLEDDDGDKDKKKKGGKKAKVAPHALAPHQT 397
Query: 270 LIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARG 329
LIF +TKHHVE+L L G S YG +DQ AR I + +FR T L+VTDVAARG
Sbjct: 398 LIFAATKHHVEYLTNLLITVGYSVSHIYGSLDQVARSIQMDKFRKGLTNLLVVTDVAARG 457
Query: 330 IDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKP- 388
IDIP+L NV+N+DFP ++FVHRVGR ARAGR G A+SF+T+ ++ YLLDL LFL++P
Sbjct: 458 IDIPVLQNVVNYDFPHGARVFVHRVGRTARAGRPGWAWSFITNSELPYLLDLQLFLARPL 517
Query: 389 IRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSL 448
+ P +E+ + V+ G F + +D + R + D + L SL
Sbjct: 518 VNTVPGDEDHFYTENLVL--------------GTFGRETLDEEVEYTRSLDDVNHSLPSL 563
Query: 449 QRTCTNAFRLYSKTKPLPSKESIRRGKDLPRE----------GLHPMF--KNVLEGGELM 496
++ LY ++K S S +R K++ ++ +HP+ + E +
Sbjct: 564 RQVMIRGHTLYERSKGKASPASYKRAKEMMKDPKWLLAGSDSSIHPVLLRGSGAEDQRKL 623
Query: 497 ALAFSERLKA---FRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQ 553
A + L+A F+P +T+ E + +++ +MK++R K I
Sbjct: 624 QEARANLLRAVSSFKPSETVFEVTHKG---------NAETAALMKERRKALSKSIERSEA 674
Query: 554 QRSSKSMEKEVEPEADSLMAKEIKET------------HGSKRKAKTFKDEEYFISSVPT 601
+ S + + E + + ++ K+ + +K +++DEE+++S P
Sbjct: 675 MKMSAKDGIDFDGEDEEVEQRDTKDVEMADEEDIAAVFNTDSKKKGSYRDEEFYLSYTPK 734
Query: 602 NHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGER 661
+ E G S+ + + DL DD GL+K+ WDK+ KK+IK G+
Sbjct: 735 DADTERGYSLNDGASSFARQAQNVAFDLEGDDGDGLRKRNNTLTWDKKKKKFIK---GDG 791
Query: 662 VSASG-KVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNAEETTSVPGGRHL 719
V A K+++TESGAK+ AT ++G + +WK + H+ + E ++ V GG+
Sbjct: 792 VGADNVKMIRTESGAKLPATYRSGRFDEWKAK-HRVSLPRVGEVENSSGSRGRVFGGKKY 850
Query: 720 ------------------------------------GGNNRKFRGGKNQQRSVPN----- 738
G + G K ++ S P+
Sbjct: 851 KHNQITAPKPLDKLDKNYERKLKKRKEKEAAGMEEEGPSQPTLPGKKGKKGSAPSRRYGG 910
Query: 739 ---AHVCSEIKDLDQVRKERQKKADRIA 763
V SE+K +DQ+RK+R+ K R A
Sbjct: 911 KSFGKVKSELKTVDQIRKDRKIKEQRKA 938
>gi|367006623|ref|XP_003688042.1| hypothetical protein TPHA_0M00330 [Tetrapisispora phaffii CBS 4417]
gi|357526349|emb|CCE65608.1| hypothetical protein TPHA_0M00330 [Tetrapisispora phaffii CBS 4417]
Length = 981
Score = 453 bits (1165), Expect = e-124, Method: Compositional matrix adjust.
Identities = 323/877 (36%), Positives = 452/877 (51%), Gaps = 166/877 (18%)
Query: 15 KQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKT 74
+ K K K G F S LS + I +KG++ PTPIQRKT+PLIL D+V MARTGSGKT
Sbjct: 116 QDKSKHKKGSFPSFGLSKLILSNINKKGFRQPTPIQRKTIPLILQRRDIVGMARTGSGKT 175
Query: 75 AAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSME 134
AAF++PM+++L H + G RA+ILSP+R+LA+QT K K+ R + LR LL GGDS+E
Sbjct: 176 AAFILPMIEKLKTHSGKIGARAVILSPSRELAMQTHKVFKDFSRGSQLRSVLLTGGDSLE 235
Query: 135 SQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILG 194
QF + NPD+I+ATPGR MH E+ + LK+VEYVVFDEAD LF MGF EQL+++L
Sbjct: 236 EQFSMMMSNPDVIVATPGRFMHLKVEM-GLDLKTVEYVVFDEADRLFEMGFQEQLNELLA 294
Query: 195 QLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAA 254
L NRQTLLFSATLP++L +FAKAGL +P LVRLD ++KIS +L+LAFF+ + EE+ A
Sbjct: 295 SLPMNRQTLLFSATLPNSLVDFAKAGLTNPVLVRLDAESKISENLQLAFFSTKNEEREAT 354
Query: 255 LLYMIR-----------------------EHISSDQQ----------------------- 268
LLY+++ + I SD +
Sbjct: 355 LLYILQDVIDLQIGTEEEIKKLTASNKRSDEIDSDNEREQADRKLNKKKKFEKFIKPKLP 414
Query: 269 ----------TLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
T++FV T+HHVE+++ L ++ G S YG +DQ ARK + FRA T
Sbjct: 415 SANELPSEKATIVFVPTRHHVEYISNLLKDCGYLVSYLYGTLDQHARKHQLFNFRAGLTS 474
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
L+VTDVAARG+DIP+L NVIN+ P KIFVHRVGR ARAG G A+S + ++ YL
Sbjct: 475 ILVVTDVAARGVDIPMLANVINYSLPASSKIFVHRVGRTARAGNKGWAYSIASETELPYL 534
Query: 379 LDLHLFLSKPIRAAPSEEEVLLDMDGVMSKI--DQAIANGETIY---------------G 421
LDL LFL K I +L M + ++ IA G Y G
Sbjct: 535 LDLELFLGKKI--------LLTQMYEATCSLAKNKWIAAGNEEYTFQPPKPSYTDRMILG 586
Query: 422 RFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREG 481
P+ ++ + D + I+ +S DL ++T A +LY +T+ S ESI+RGK+L G
Sbjct: 587 SCPRLELENIGDLYKNIMSASFDLQMAKKTSLKAEKLYFRTRTAASPESIKRGKELIASG 646
Query: 482 L---HPMF-KNVLEGGELMALAFSERLKAFRPKQTILE-------AEGEAARSKHLQGPS 530
H MF KNV E L F + + K+T+ E A + Q
Sbjct: 647 WDEQHIMFGKNV----EKEKLDFLSKFQNRNNKETVFEFGRNPTDATAVLMNRRRRQLAP 702
Query: 531 SQWVDVMKKKRAVHEKIINLVHQQRSSKSMEKEV----EPEADSLMAKE----------- 575
Q V ++K E++ L H ++E E+ + E+ ++KE
Sbjct: 703 IQRKAVERRKLLEKERLAGLSH------ALEDEILKGEDHESGYTISKEALAAFEDADKL 756
Query: 576 IKETHGSKRKAKTFKDEEYFISS-VPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDS 634
++E KRK KT+KD ++F+S P + L++ S GF N A DL DD
Sbjct: 757 LQEQEKKKRKPKTYKDPQFFLSHYAPAKDIQDKQLNLTS--GF-TNDAAQAAYDLNNDDK 813
Query: 635 GGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSH 693
+ KQ WDK KKY+ +N + + K + E G K+ A+ K+G + +W + H
Sbjct: 814 VQVHKQTANIKWDKGRKKYVNINGLD----NKKYIIGEGGQKIPASFKSGRFDEWSKARH 869
Query: 694 KKVYLKGASNEGN------AEETTSVPGGRHLGGNNRKFRGGKNQQRSVPNAH------- 740
K LK E + A+ T G R GG +F+ +N+ +P+ H
Sbjct: 870 IKP-LKAGVREDSIPTNLLADVTGPSDGSRTFGG---RFKHKQNKAPRLPDKHRDDYESQ 925
Query: 741 ----------------------VCSEIKDLDQVRKER 755
V SE+K + Q+RKER
Sbjct: 926 KKKVQNALERGVQVKGYNNRNSVKSELKTVAQIRKER 962
>gi|366991885|ref|XP_003675708.1| hypothetical protein NCAS_0C03530 [Naumovozyma castellii CBS 4309]
gi|342301573|emb|CCC69343.1| hypothetical protein NCAS_0C03530 [Naumovozyma castellii CBS 4309]
Length = 977
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 318/889 (35%), Positives = 461/889 (51%), Gaps = 150/889 (16%)
Query: 17 KKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAA 76
K K K G F S LS + I RKG++ PTPIQRKT+PLIL D+V MARTGSGKTAA
Sbjct: 119 KSKHKKGSFPSFGLSKFIISNITRKGFRQPTPIQRKTIPLILQNRDIVGMARTGSGKTAA 178
Query: 77 FLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQ 136
F++PM+++L H + G RA+ILSP+R+LA+QT K+ + T LR LL GGDS+E Q
Sbjct: 179 FILPMIEKLKTHSGKIGARAVILSPSRELAMQTHNVFKDFSKGTQLRSVLLTGGDSLEDQ 238
Query: 137 FEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL 196
F + NPD+IIATPGR +H E+ ++ LKS+EY VFDEAD LF MGF EQL+++L L
Sbjct: 239 FGMMMNNPDVIIATPGRFLHLKVEM-NLDLKSIEYAVFDEADRLFEMGFQEQLNELLASL 297
Query: 197 SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALL 256
+RQTLLFSATLPS+L +FAKAGL +P LVRLD +TKIS +L++ F + + +E+ A LL
Sbjct: 298 PSSRQTLLFSATLPSSLVDFAKAGLTNPVLVRLDAETKISENLEMLFLSTKNDEREANLL 357
Query: 257 YMIRE----------------------------------------------------HIS 264
Y+++E +
Sbjct: 358 YLLQEVIKIPLASRDQLAKFNAQNIKDNASDSDSDGDDKRQKGKRKKFKKERLPPANQLP 417
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
S++ T++FV T+HHVE+++ L RE G S YG +DQ ARK + FR T L+VTD
Sbjct: 418 SEKSTILFVPTRHHVEYISNLLRESGYLISYIYGTLDQHARKRQLYNFRTGLTSILVVTD 477
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
VAARG+DIP+L NVIN+ P KIFVHRVGR ARAG G A+S V+ ++ YLLDL +F
Sbjct: 478 VAARGVDIPMLANVINFSLPASSKIFVHRVGRTARAGNRGWAYSIVSESELPYLLDLEIF 537
Query: 385 LSKPIRAAP---SEEEVLLD------MDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRV 435
L K I P S +++L D + K + I G P+ ++ + D
Sbjct: 538 LGKKILMTPMYDSMSDIMLKKWIAEGHDEINFKPPKVSYTNRMILGSAPRLELEGLGDLY 597
Query: 436 REIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVLEG--G 493
+ ++ S+ ++ L+ A +LY +T+P S ES++R K++ G +N++ G
Sbjct: 598 QNVMKSNFEIQLLKGVAMKAEKLYFRTRPAASPESLKRSKEIIASGWDE--QNIMFGKNA 655
Query: 494 ELMALAFSERLKAFRPKQTILE--AEGEAARSKHLQGPSSQWVDVMKKKRAVH-----EK 546
E L F +L+ R K+T+ E + + S ++ Q + +K + H EK
Sbjct: 656 EKEKLDFLAKLQNRRNKETVFEFASNPDDEMSVFMKRRRRQLAPIQRKAKERHELLQKEK 715
Query: 547 IINLVHQQRSSKSMEKEV----EPEADSLM-----------AKEIKETHGSKRKAKTFKD 591
+ L H +ME EV E +S E+ +K+K KTFKD
Sbjct: 716 LAGLTH------TMEDEVLKGDNAEDNSYTISEDTLKQFEDGDELLAGQENKKKKKTFKD 769
Query: 592 EEYFISS-VPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRG 650
+F+S P + + L V + GF N A DL DD + KQ WDK+
Sbjct: 770 PTFFLSHYAPASDIQDKQLQVAN--GFA-NEAAQAAYDLNNDDKVQVHKQTATVKWDKKR 826
Query: 651 KKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKW-KERSHK--KVYLKGASNEGN 706
KKY+ + + + K + ESG K+ A+ ++G + +W K R K KV + +S N
Sbjct: 827 KKYVNVQGLD----NKKYIIGESGQKIAASFRSGKFDEWTKARKLKPLKVGARESSIPSN 882
Query: 707 -AEETTSVPGGRHLGGNNRKFRGGKNQQRSVPNAH------------------------- 740
+ T PG ++ KF+ + + +P+ H
Sbjct: 883 LLSDPTQGPGAQN--SVRGKFKHKQLKAPKLPDKHRDDYQTQKKKVAKALENGVQVRGFR 940
Query: 741 ---VCSEIKDLDQVRKERQKKADRIAFMKGKTQKGKKFSKNGKRGKPRK 786
+ SE+K +++RK+R AFM+ KK +KN + K RK
Sbjct: 941 GPGMKSELKSTEEIRKQR-------AFME------KKRAKNARPAKRRK 976
>gi|307104599|gb|EFN52852.1| hypothetical protein CHLNCDRAFT_26393, partial [Chlorella
variabilis]
Length = 313
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 210/313 (67%), Positives = 265/313 (84%)
Query: 58 LSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117
+ G DVV MARTGSGKTAAF++P+++RL +H + G RA+ILSPTR+LALQT K KELG
Sbjct: 1 MQGLDVVGMARTGSGKTAAFVIPLVERLKEHSARAGARAVILSPTRELALQTHKVVKELG 60
Query: 118 RYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEA 177
R+++LR ++LVGGDSME+QF ELA PDI++ATPGRLMHHL EVE MSL+S EY+VFDEA
Sbjct: 61 RHSNLRTAVLVGGDSMEAQFAELAAFPDILVATPGRLMHHLQEVEGMSLRSCEYLVFDEA 120
Query: 178 DCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISP 237
D LF MGFAEQL +IL + +RQTLLFSAT+P ALAEFA+AGL++P LVRLD DTKISP
Sbjct: 121 DRLFEMGFAEQLRQILASVGPSRQTLLFSATMPKALAEFARAGLKEPELVRLDADTKISP 180
Query: 238 DLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCY 297
DL LAFFT+R E+K AALLY++RE +++DQ T+IF ST+HHVEFL L ++GLE + +
Sbjct: 181 DLALAFFTVRWEDKPAALLYLLREVVAADQPTIIFASTRHHVEFLAGLLAQDGLEAAYVH 240
Query: 298 GDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRA 357
G+MDQ ARKIH+++FRA + L+VTDVAARG+DIPLLDNV+++DFPPKPK+FVHR GRA
Sbjct: 241 GNMDQAARKIHIAKFRAGRVRLLVVTDVAARGLDIPLLDNVVHYDFPPKPKLFVHRSGRA 300
Query: 358 ARAGRTGTAFSFV 370
ARAGR+GT++S +
Sbjct: 301 ARAGRSGTSYSLL 313
>gi|440295520|gb|ELP88433.1| DEAD box ATP-dependent RNA helicase, putative [Entamoeba invadens
IP1]
Length = 672
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 265/684 (38%), Positives = 399/684 (58%), Gaps = 63/684 (9%)
Query: 14 EKQKKKSKS-GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
E +KKKSKS GGF+S+ LS +V + I KG+KVPTPIQRK +P I++G DV+AMARTGSG
Sbjct: 2 EIEKKKSKSTGGFQSMGLSKHVLQGILHKGFKVPTPIQRKAIPAIMTGVDVIAMARTGSG 61
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTAA+LVP++++L H + GVR++++ PTR+LALQT+K EL T+LR SL++GG
Sbjct: 62 KTAAYLVPIIEKLGFH-SEDGVRSIVICPTRELALQTVKVFNELTFKTNLRASLIIGGSK 120
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
+ QFE L +NPDII+ATPGRL L E ++SL+ V+ V FDEAD +F GF+EQ+ I
Sbjct: 121 LYEQFENLEKNPDIIVATPGRLTFIL-ESANISLQRVDIVCFDEADMMFEQGFSEQISDI 179
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
+ L +RQ LLFSAT+P +L F K L+ P ++RLD + K+SPDL+ F+ +++ EK
Sbjct: 180 VRLLPLSRQFLLFSATIPQSLGVFLKKTLKRPEIIRLDTEDKLSPDLENIFYHVKEVEKD 239
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
LL+++ E I ++QT+IF +T+H VE+L L ++ + S+ +G DQ R+I++ +F
Sbjct: 240 GHLLWLLLEKIPKEEQTVIFCATRHEVEYLGALLKQYKVNSSILFGKADQQDREINLKKF 299
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
R + + VTDVAARG+DIP LDNVIN+DFP K+++HR GR ARAGR GT ++FV +
Sbjct: 300 RNDENKIMFVTDVAARGVDIPNLDNVINYDFPSSAKLYIHRCGRVARAGRIGTCYNFVQT 359
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVS 432
E+M YL DL +F M K E G P+ +D V
Sbjct: 360 EEMGYLKDLEVF--------------------AMDK--------EVPIGNVPREYVDPVL 391
Query: 433 DRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVLEG 492
R+ +++D++ DLN L+ TN+ Y K+KP S E +R+ KD+ +G+HP F + G
Sbjct: 392 SRLDQLLDANYDLNYLKIGATNSMSAYRKSKPSASSEGVRKSKDMNFDGIHPSFN--MTG 449
Query: 493 GELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVH 552
+ + + +K +RPK +I + + K DV+ KK A + KI +
Sbjct: 450 DDKNRMEWLTGIKNYRPKASIFQIDTTKETQKQ--------ADVV-KKLANNPKIAEAI- 499
Query: 553 QQRSSKSMEKEVEPEADSLMAKEIKETHGSKRKAKTFKDEEYFISSVPTNHHMEAGLSVR 612
+R+ + E+ E +A +E ++ G +IS+ P H + S R
Sbjct: 500 -RRAKEKKERMAELDAIKKNEEEKEKAPG-------------YISTGPVKHSIFDNSSDR 545
Query: 613 SDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTE 672
N L+ A+ ++ AD+ L++Q + WD++ KK+I + G K
Sbjct: 546 IVYSTK-NPLDLAI-EIAADEEQDLKQQAREKMWDRKKKKFIMASGGLEHHRREMKKKEA 603
Query: 673 SGAKVKATKTGIYKKWKERSHKKV 696
+VK YK W++ KK+
Sbjct: 604 EMEQVKEK----YKIWRKNQDKKI 623
>gi|294658755|ref|XP_461087.2| DEHA2F16720p [Debaryomyces hansenii CBS767]
gi|218512019|sp|Q6BL34.2|DBP10_DEBHA RecName: Full=ATP-dependent RNA helicase DBP10
gi|202953360|emb|CAG89469.2| DEHA2F16720p [Debaryomyces hansenii CBS767]
Length = 932
Score = 450 bits (1158), Expect = e-123, Method: Compositional matrix adjust.
Identities = 304/847 (35%), Positives = 448/847 (52%), Gaps = 123/847 (14%)
Query: 16 QKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTA 75
Q KK+K+G F S S + I +KG+K PTPIQRKT+PLI+ DVV MARTGSGKTA
Sbjct: 90 QAKKAKNGSFPSFGFSKFLLTNISKKGFKQPTPIQRKTIPLIMENRDVVGMARTGSGKTA 149
Query: 76 AFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMES 135
AF +P++++L H P+ GVRA+ILSP+R+LA QT K KE + TDLR +L+GGDS+E
Sbjct: 150 AFTLPLVEKLKSHSPRVGVRAIILSPSRELASQTFKQVKEFSKGTDLRSIVLIGGDSLEE 209
Query: 136 QFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQ 195
QF + NPD+I+ATPGR +H E+E + LK+VEY+VFDEAD LF MGFAEQL++++
Sbjct: 210 QFSSMMTNPDVIVATPGRFLHLKVEME-LELKTVEYIVFDEADRLFEMGFAEQLNELIAA 268
Query: 196 LSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAAL 255
L +RQ+LLFSATLP +L +FAKAGL +P LVRLD +TKIS L++AFF+++ E+ A+L
Sbjct: 269 LPSSRQSLLFSATLPRSLIDFAKAGLTNPVLVRLDAETKISDQLQMAFFSIKNNEREASL 328
Query: 256 LYMIREHIS--------------------------------------------------- 264
LY+++E I
Sbjct: 329 LYVLQEVIKLPLASPEEVKRYSDMEKRDNGSEDEAEDENNNKKKRFKFKKERLPPANMLP 388
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
S T+IFV TKHHVE++ L ++ G S YG +DQ ARK + +FR T L+VTD
Sbjct: 389 SKHSTIIFVPTKHHVEYVTTLLKDAGYLVSYIYGTLDQHARKQQLYQFRIGMTSLLVVTD 448
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
VAARGIDIP+L NV+N+ P KIF+HRVGR ARAG +G A+S V +++ YLLDL LF
Sbjct: 449 VAARGIDIPILANVVNYTLPGSSKIFIHRVGRTARAGNSGWAYSIVNEKELPYLLDLELF 508
Query: 385 LSKPIRAAPSEEE--VLLDMDGVMSKIDQAIANGE-TIYGRFPQTVIDLVSDRVREIIDS 441
L + + E+ +L + ++ ++ + + G P+ I+ + I+ +
Sbjct: 509 LGRKVLLTSMHEKKCEMLKTKQSSNYVEPKVSYTDRLVLGSIPRVDIETFQELYENILRN 568
Query: 442 SADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREG----LHPMFKNVLEGGELMA 497
+L+ ++ T +LY +T+ S+ES++R K++ G H +F LE +
Sbjct: 569 HYELSVVKGVATKGEKLYYRTRQSASQESLKRSKEILSTGNWDDQHLLFGPNLEKEK--- 625
Query: 498 LAFSERLKAFRPKQTILEAE------GEAARSKHLQGPSSQWVDVM---KKKRAVHEK-- 546
F +L + K+T+ E E + + + Q + K+KR + EK
Sbjct: 626 EKFLTQLLNRKSKETVFEFNKKGNDRDEDSLVEFMHKRRKQIAPIQRRAKEKRELLEKER 685
Query: 547 IINLVHQQR------------SSKSMEKEVEPEADSLMAKEIKETHGSKRKAKTFKDEEY 594
+ L H S ++E + E D+ + K K+F+D +Y
Sbjct: 686 MAGLTHGIENEILKNDGEIGYSGITIEADEEELQDAFEDADELIEKKKIEKKKSFRDPQY 745
Query: 595 FISSVPTNHHMEAGLSVRSDQGFGL-----NRLEAAVLDLVADDSGGLQKQKQVYHWDKR 649
F+S H+ A +V DQ L N A DL D+ L KQV WD++
Sbjct: 746 FLS-----HYAPA--AVIQDQQLSLSSSFANDAAKATFDL--DNDEKLNANKQVMQWDRK 796
Query: 650 GKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNAE 708
Y+ + S K + ESG K+ AT ++G + WK++ + K GA E NA
Sbjct: 797 KGNYVNAH-----STDKKFIIGESGQKIPATYRSGRFDDWKKQRNLKPTKTGAM-EANA- 849
Query: 709 ETTSVPGGRHLGGNNRKFRGGKNQQRSVPNAHVCSEIKDLDQVRKERQKKA-DRIAFMKG 767
GN+R+F+ + V + + + +D +KE+ KKA D +KG
Sbjct: 850 ----------TNGNDRRFK-----HKKVASPKLPDKFRDDYHKQKEKVKKAVDSGLKVKG 894
Query: 768 KTQKGKK 774
+ G+K
Sbjct: 895 YNKPGQK 901
>gi|156846782|ref|XP_001646277.1| hypothetical protein Kpol_1032p11 [Vanderwaltozyma polyspora DSM
70294]
gi|160380605|sp|A7TGW7.1|DBP10_VANPO RecName: Full=ATP-dependent RNA helicase DBP10
gi|156116952|gb|EDO18419.1| hypothetical protein Kpol_1032p11 [Vanderwaltozyma polyspora DSM
70294]
Length = 977
Score = 450 bits (1158), Expect = e-123, Method: Compositional matrix adjust.
Identities = 310/874 (35%), Positives = 440/874 (50%), Gaps = 157/874 (17%)
Query: 16 QKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTA 75
+K K K G F S S + + +KG++ PTPIQRKT+PLIL D+V MARTGSGKTA
Sbjct: 114 EKSKHKKGSFPSFGFSKLILSNVHKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTA 173
Query: 76 AFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMES 135
AF++PM+++L H + G RA+ILSP+R+LALQT + KE + T LR LL GGDS+E
Sbjct: 174 AFVLPMIEKLKSHSSKIGARAVILSPSRELALQTHRVFKEFSKGTHLRSVLLTGGDSLED 233
Query: 136 QFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQ 195
QF + NPD+I+ATPGR +H E+ + LK+VEYVVFDEAD LF MGF EQL+++L
Sbjct: 234 QFSMMMSNPDVIVATPGRFLHLKVEMS-LDLKTVEYVVFDEADRLFEMGFQEQLNELLAA 292
Query: 196 LSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAAL 255
L NRQTLLFSATLPS+L +FAKAGL +P LVRLD +TKIS +L++ F + + EE+ L
Sbjct: 293 LPMNRQTLLFSATLPSSLVDFAKAGLTNPVLVRLDAETKISENLEILFLSTKNEERENNL 352
Query: 256 LY----MIREHISSDQQ------------------------------------------- 268
LY +I+ + +D Q
Sbjct: 353 LYLLQDVIKIPLGTDDQIKKLSDFNKSLSDSDSEDEDNKGKQNSRKSKKGKFQKLKVSAS 412
Query: 269 --------TLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
T++F T+HHVE++ L ++ G S YG +DQ ARK + FRA T L
Sbjct: 413 NELPTEKSTIVFAPTRHHVEYITQLLKDSGFLVSYLYGTLDQHARKRQLLNFRAGLTSIL 472
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLD 380
+VTDVAARG+DIP+L NVIN+ P KIF+HRVGR ARAG G A+S V+ ++ Y+LD
Sbjct: 473 VVTDVAARGVDIPMLANVINYSLPASSKIFIHRVGRTARAGNRGWAYSIVSETELPYMLD 532
Query: 381 LHLFLSKPIRAAPSEEEVLLDMDGVMSKI--DQAIANGET---------------IYGRF 423
L LFL K I +L M K+ + IA+G T + G
Sbjct: 533 LELFLGKKI--------LLTSMYEASCKLMKSKWIADGNTESSFEDPKISYTNRLVLGSA 584
Query: 424 PQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLH 483
P+ I+ V D + II+S+ DL ++ A +LY +T+ S ESI+R K++ G
Sbjct: 585 PRYDIESVGDLYKNIIESNFDLQMAKKVSLKAEKLYCRTRTAASPESIKRSKEVIASGWD 644
Query: 484 PMFKNVLEGGEL--MALAFSERLKAFRPKQTILE--AEGEAARSKHLQGPSSQWVDVMKK 539
+N+ G L L F + + R K+T+ E + +Q Q + +K
Sbjct: 645 E--QNIRFGRNLEKEKLNFLAKFQNRRNKETVFEFGKNPNDDTAILMQKRRKQIAPIQRK 702
Query: 540 KRAVH-----EKIINLVHQ------------------QRSSKSMEKEVEPEADSLMAKEI 576
R E++ L H+ + + KS E +AD ++
Sbjct: 703 ARKRQELLDKERVAGLTHKIEDEILKGEDHEAGYSVPEEALKSFE-----DADKILE--- 754
Query: 577 KETHGSKRKAKTFKDEEYFISS-VPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSG 635
++ K+K+KTF+D +FIS P + L + S GF N A DL DD
Sbjct: 755 EQESSRKKKSKTFRDPNFFISHYAPAGDIQDKQLQITS--GF-TNDAAQAAYDLNDDDKV 811
Query: 636 GLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHK 694
+ KQ WDK+ KKY+ + + + K + ESG K+ A+ K+G + +W + +
Sbjct: 812 QVHKQTATVKWDKKRKKYVNMQGID----NKKYIIGESGQKIPASFKSGKFAEWSKSRNI 867
Query: 695 KVYLKGA----------SNEGNAEETTSVPGGRHLGGNNR------KFRGGKNQQRSVPN 738
K GA S+ + PGGR N+ KFR Q+
Sbjct: 868 KGIKTGARETSIPTNLLSDPTTDSGSQRGPGGRFKHKQNKAPRLPDKFRDDYQSQKKKVQ 927
Query: 739 AHV--------------CSEIKDLDQVRKERQKK 758
+ + +E+K Q+RKER K
Sbjct: 928 SAIERGVSVKGFGGSSGNTELKTTAQIRKERMAK 961
>gi|388581211|gb|EIM21521.1| DEAD-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 929
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 296/819 (36%), Positives = 458/819 (55%), Gaps = 119/819 (14%)
Query: 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGA--DVVAMARTGSGKTAAFLVP 80
G F+S+ L+P++ R++ +G+ PTPIQR +P ILS D+V MARTGSGKT A+L+P
Sbjct: 89 GSFQSMGLNPSLLRSLFLRGFNQPTPIQRLAIPPILSTPPRDLVGMARTGSGKTLAYLIP 148
Query: 81 MLQRLN-QHVPQGGVRALILSPTRDLALQTLKFTKELGR---------YTDLRISLLVGG 130
++Q+L QH + G R+LIL P+R+LALQ L+ KEL + ++R S++VGG
Sbjct: 149 LVQKLGAQHSIRFGARSLILVPSRELALQILRVGKELVKGYKKEMGEGQEEMRWSVIVGG 208
Query: 131 DSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLH 190
+S++ QF +A NPD+IIATPGRL+H E+ ++ LKSVEYVVFDEAD LF MGF QL+
Sbjct: 209 ESLDDQFSLIASNPDVIIATPGRLLHLAVEM-NLDLKSVEYVVFDEADRLFEMGFQLQLN 267
Query: 191 KILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE 250
+++ +L RQTLLFSATLP +L EFAKAGL DP LVRLD ++KIS DL+ AFF+++ +
Sbjct: 268 ELISRLPTTRQTLLFSATLPKSLVEFAKAGLVDPKLVRLDAESKISEDLETAFFSVKPSD 327
Query: 251 KHAALLYMIREHIS--------------SDQ----------------QTLIFVSTKHHVE 280
K +ALL +I++ I +D+ QT+IF +TKHHVE
Sbjct: 328 KDSALLALIKDVIKVPPGFQEAQDTSSKNDKEKKRKRTALPSFLKPYQTIIFTATKHHVE 387
Query: 281 FLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN 340
+LN L + G + YG +DQ AR++ + +FR + L+VTDVAARGID+P +NVIN
Sbjct: 388 YLNTLLKAAGYAVAHVYGSLDQTARQLQMDQFRRGVSSILVVTDVAARGIDLPGCENVIN 447
Query: 341 WDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPS------ 394
+DFP +IF+HRVGR ARAGR GTA+SF+T+ ++ YLLDL LFL++P+ + S
Sbjct: 448 YDFPTGARIFIHRVGRTARAGRKGTAWSFITNSELPYLLDLSLFLARPLVSPTSPTNKNK 507
Query: 395 EEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVR-EIIDSSADLNSLQRTCT 453
EEE+ A N TI G P+ +D + + +++ + +L SL
Sbjct: 508 EEEL-------------ASKNTLTI-GTIPRDTLDPYVEYLSGAVLNEAPNLPSLHGVMM 553
Query: 454 NAFRLYSKTKPLPSKESIRRGKDLPRE-------------GLHPMFKN----VLEGGELM 496
LY +++ S ES RR KD+ ++ +HP F L+ E
Sbjct: 554 RGHGLYERSQGKASAESYRRAKDIIKDARWGFAGTSGEDKAMHPSFAGTAAETLQVDEET 613
Query: 497 ALAFSERL---KAFRPKQTILE----AEGEAA-----RSKHLQGPSSQWVDVMKKKRAVH 544
A ++ L FRP +T+ E ++A R K L + +++ +K++A+
Sbjct: 614 AKKRADLLAVVNGFRPNETVFEIGQRGNNDSAKLMKERRKDL-AKAEHRLNLKEKEKALQ 672
Query: 545 EKIINLVHQQRSSKSMEKEVEPEADSLMAKEIKETHGSKRKAKTFKDEEYFISSVPTNHH 604
E++ S + +KE + +AD + +T K++ K F+D +++ + H
Sbjct: 673 EEMEGETTPGDSLDNADKEEQEQADEDDIAAVFDTGSKKKQKKDFRDPNFYMGYEHADAH 732
Query: 605 MEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQV---YHWDKRGKKYIKLNNGER 661
+ G S++ F + A + L+ D+ L+ QK WDK+ K +++ G
Sbjct: 733 TDKGYSLQDGATFA-EQARTAEVTLMDDEQ--LKSQKMAPSQLKWDKKKKNFVR---GGG 786
Query: 662 VSASG-KVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNAEETTSVPGGRHL 719
+ A K++KTESGA++ AT ++G + +W+++ + G + E N + ++ G +
Sbjct: 787 IGADNQKLIKTESGARLPATFRSGKFDEWRKKHKMDLPRTGETEEKNHK---ALAMGMNG 843
Query: 720 GGNNRKFRGGKNQQRSVPNAHVCSEIKDLDQVRKERQKK 758
G +K+R K +E K LD+ K +KK
Sbjct: 844 GVGGKKYRHNK-----------VTEAKPLDKKDKNYEKK 871
>gi|146415030|ref|XP_001483485.1| hypothetical protein PGUG_04214 [Meyerozyma guilliermondii ATCC
6260]
Length = 914
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 288/752 (38%), Positives = 416/752 (55%), Gaps = 103/752 (13%)
Query: 16 QKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTA 75
Q K+K+G F S LS + + I +KG+K PTPIQRKT+PL++ DVV MARTGSGKTA
Sbjct: 92 QATKAKAGSFASFGLSKFLLKNIAKKGFKQPTPIQRKTIPLVMESRDVVGMARTGSGKTA 151
Query: 76 AFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMES 135
AF++P++++L H P+ GVRA+ILSP R+LALQT K KE + TDLR +L+GGDS+E
Sbjct: 152 AFVLPVVEKLKSHSPKVGVRAVILSPLRELALQTFKQVKEFTKGTDLRSIVLIGGDSLED 211
Query: 136 QFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQ 195
QF + NPDI++ATPGR +H E+ ++ LK+VEY+VFDEAD LF MGFAEQL+++L
Sbjct: 212 QFLSMMTNPDILVATPGRFLHLKVEM-NLDLKTVEYIVFDEADRLFEMGFAEQLNELLVA 270
Query: 196 LSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAAL 255
L +RQ+LLFSATLP +L +FAKAGL +P LVRLD +TKIS L++AFFT ++ E+ A L
Sbjct: 271 LPPSRQSLLFSATLPRSLVDFAKAGLSNPVLVRLDAETKISDQLQMAFFTTKRTERDANL 330
Query: 256 LYMIREHIS-----------------------------------------------SDQQ 268
LY++ E I S+
Sbjct: 331 LYILLEVIKMPLATQDQIKKLKELEEGADDDDSDEEKKPKKKKRKLEKPAPANRLPSEHS 390
Query: 269 TLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAAR 328
T++FV TKHHVE++ L R+ G YG +DQ ARK + +FRA T L+VTDVAAR
Sbjct: 391 TIVFVPTKHHVEYVTTLLRDAGHLVLYIYGTLDQHARKQQLYQFRAAYTNILVVTDVAAR 450
Query: 329 GIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKP 388
GIDIP+L NV+N+ P KIF+HRVGR ARAG G A+S V +++ YLLDL LFL K
Sbjct: 451 GIDIPVLANVVNYTLPGSSKIFIHRVGRTARAGNKGWAYSIVNEKELPYLLDLELFLGKK 510
Query: 389 IRAAP-SEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNS 447
+ E++V + + +S + + + + G P+ I+ + ++ + +L +
Sbjct: 511 VLLTQMHEKKVQICHEKGLSAPEVSYKD-RLVLGLAPRVDIESSQELCDNLLRNHYELRT 569
Query: 448 LQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGL----HPMFKNVLEGGELMALAFSER 503
++ LY +T+ S+ES++R K++ G H +F LE + LA +
Sbjct: 570 IRDVANKGEILYYRTRQPASQESVKRAKEIMDTGAWDDQHLLFGANLEKEKEKFLA---K 626
Query: 504 LKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKII-------NLVHQQRS 556
L + K+T+ E + R + V+ M K+R I L+ ++R
Sbjct: 627 LADRKVKETVFEFRNKGQRDE------DSLVEFMHKRRRQIAPIQRRAKERKQLLEKERM 680
Query: 557 ---SKSMEKEV-----EPEADSLMAKEIKETHG------SKRKAKTFKDEEYFISSVPTN 602
+ +E E+ E D+ ++ E SK+K KT++D ++F+S
Sbjct: 681 AGLTHGIENEILKGDGEVGYDNYNGADLDEVFEDGDEALSKKKRKTYRDPQFFLS----- 735
Query: 603 HHMEAGLSVRSDQ----GFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNN 658
H L ++ Q F N AA DL DD Q KQ+ WDK+ KYI N
Sbjct: 736 -HYAPALVIQDKQLELSSFS-NEAAAATYDLDNDDKT--QTNKQIMRWDKKKGKYI---N 788
Query: 659 GERVSASGKVVKTESGAKVKAT-KTGIYKKWK 689
+ S K + ESG K+ AT ++G Y+ W+
Sbjct: 789 SQ--STDKKYIIGESGQKIPATYRSGRYEDWR 818
>gi|291001325|ref|XP_002683229.1| ATP-dependent dead box RNA helicase [Naegleria gruberi]
gi|284096858|gb|EFC50485.1| ATP-dependent dead box RNA helicase [Naegleria gruberi]
Length = 892
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 275/723 (38%), Positives = 405/723 (56%), Gaps = 65/723 (8%)
Query: 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQ 83
F LS + + IKR G+ PTPIQ+ ++P+I G DV+AMARTGSGKT ++L P+ +
Sbjct: 39 AFAKFGLSQLLLKQIKRCGFFNPTPIQQSSIPVITQGRDVIAMARTGSGKTVSYLFPLFE 98
Query: 84 RLN-QHVPQGGVRALILSPTRDLALQTLKFTKE-LGRYTDLRISLLVGGDSMESQFEELA 141
RL+ +H G RA+I+ PTR+L LQ K + +G+ +DL+ +L GG SME QFE L+
Sbjct: 99 RLDYKHSSIVGARAVIIVPTRELVLQVNKVIYDFIGKTSDLKTCMLFGGKSMEGQFERLS 158
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
NPDIIIATPGRL+H + E +SLK VEYVVFDEAD LF MG +EQL++I+ +L RQ
Sbjct: 159 ANPDIIIATPGRLLHIILET-GLSLKRVEYVVFDEADRLFEMGLSEQLYQIIAKLPTTRQ 217
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
TLLFSATLPSA+AEF+KAGL P L+RLD + K+S +++L+ +R EK AALLY++
Sbjct: 218 TLLFSATLPSAVAEFSKAGLTSPELIRLDSEVKVSDNIRLSGLFVRSNEKVAALLYLLNS 277
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
IS + T+IF+ T+HH E+ LF +E +V YG MDQ AR ++ +FR + L+
Sbjct: 278 VISHRETTIIFIPTRHHAEYFLTLFTHYKIEATVVYGSMDQQARMENLDKFRNGEANILL 337
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
VTDVAARGIDIP ++NVIN++FP KPK+FVHRVGR RAG+ GTA+S + +++ + LDL
Sbjct: 338 VTDVAARGIDIPDVNNVINYNFPGKPKLFVHRVGRVGRAGKVGTAYSLIAPDEVPFFLDL 397
Query: 382 HLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANG----ETIYGRFPQTVIDLVSDRVRE 437
LFL + R E + D D D + N + G PQ+++D + +
Sbjct: 398 ELFLGRKSRNVVM-ETIYEDEDSRQVPADLSGRNWREFIDGYIGIIPQSILDREIEHLAH 456
Query: 438 IIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFK--NVLEGGEL 495
+ L + + C A LY++T+ PS SI R K+L +HPM K V+ E
Sbjct: 457 LERIDGGLLNEKEVCDRALTLYNRTRGDPSGASIGRSKELHTLAIHPMIKVLEVITDEEE 516
Query: 496 MALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAV--HEKIINLVHQ 553
++K +RP QTI E + + S ++MKK+R +++ V
Sbjct: 517 EQHDIIAQMKDYRPGQTIFEFK---------EKEKSAEAEIMKKRRQYLKQAQVLKQVRD 567
Query: 554 QRSSKSMEKEVEPEADS-------------LMAKEIKETHGSK-------RKAKTFKDEE 593
+E + E +A++ L++++ K+ SK +K K FKD
Sbjct: 568 YSIQSGVESDEENDANATKEKPKPKSLAERLLSEDSKQDRFSKLTNVVAPKKKKEFKDPN 627
Query: 594 YFISSV-------PT-NHHMEAGLSVRSDQ-----GFGLNRL-EAAVLDLVADDSG---- 635
+F+ P+ +H+ G S + Q N + + ++ D V D G
Sbjct: 628 FFMEYTKEDQVQDPSEDHYALNGASSKKKQLTSVVSSEFNEIPQQSISDAVMDIGGETRE 687
Query: 636 --GLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKATKTGIYKKWKERSH 693
Q++KQ WD++ KY+ G GKV + ++ K T Y KWK ++H
Sbjct: 688 ELNNQRKKQGMIWDRKKGKYVVGTMG----IDGKVRRDDNKKKDTLKTTDAYAKWKRKTH 743
Query: 694 KKV 696
++
Sbjct: 744 GRI 746
>gi|410077309|ref|XP_003956236.1| hypothetical protein KAFR_0C01060 [Kazachstania africana CBS 2517]
gi|372462820|emb|CCF57101.1| hypothetical protein KAFR_0C01060 [Kazachstania africana CBS 2517]
Length = 973
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 309/892 (34%), Positives = 446/892 (50%), Gaps = 166/892 (18%)
Query: 17 KKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAA 76
K K K G F S LS + I ++G++ PTPIQRKT+PLIL D+V MARTGSGKTAA
Sbjct: 115 KTKHKKGSFASFGLSKLILTNISKRGFRQPTPIQRKTIPLILQSRDIVGMARTGSGKTAA 174
Query: 77 FLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQ 136
F++PM+++L H + G RA+ILSP+R+LA+QT KE + +DLR LL GGDS+E Q
Sbjct: 175 FVLPMIEKLKTHSSKIGARAIILSPSRELAMQTHNVFKEFSKGSDLRSVLLTGGDSLEDQ 234
Query: 137 FEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL 196
F + NPD+IIATPGR +H E+ ++ LKSVEY+ FDEAD LF MGF EQL++++ L
Sbjct: 235 FGMIMANPDVIIATPGRFLHLKVEM-NLDLKSVEYICFDEADRLFEMGFQEQLNELIYSL 293
Query: 197 SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALL 256
NRQTLLFSATLPS+L +FAKAGL +P LVRLD +TKIS +L++ F +++ EE+ A LL
Sbjct: 294 PSNRQTLLFSATLPSSLVDFAKAGLTNPVLVRLDTETKISENLEMLFLSIKNEEREANLL 353
Query: 257 YMIREHIS---------------------------------------------------- 264
Y+++E I
Sbjct: 354 YLLQEEICIPLATEEQIKKLNNESKIDDDSDSEDDEATRRQKRKSKNFKKQRLPPANQLP 413
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
S++ T+IFV T+HHVE+++ L ++ G S YG +DQ AR + FR T L+VTD
Sbjct: 414 SEKATIIFVPTRHHVEYISQLLKDCGYLVSYIYGTLDQRARNRQLYNFRLGLTSILVVTD 473
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
VAARG+DIP+L NVIN+ P K+FVHRVGR ARAG G A+S V+ ++ YLLDL LF
Sbjct: 474 VAARGVDIPMLANVINFSLPVSSKVFVHRVGRTARAGNRGWAYSIVSENELPYLLDLELF 533
Query: 385 LSKPIRAAPSEEEVLLDMDGVMSKI--DQAIANGET---------------IYGRFPQTV 427
L K I +L M I + ++ G++ + G P+
Sbjct: 534 LGKKI--------LLTSMYDATCDIMKKKWVSEGKSELTFQDPKPSYTNRMVLGSAPRLQ 585
Query: 428 IDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFK 487
++ ++D ++ S DL +++T A +LY +T+ S ES++R K++ G
Sbjct: 586 VEDLNDLYTGVLSGSFDLKMMKQTALKAEKLYFRTRTSASPESMKRSKEIILSGWDEQNI 645
Query: 488 NVLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKI 547
+ E F +L+ K+T+ E + P + +MK++R I
Sbjct: 646 RFGKNVEKEKFQFLAKLQNRHNKETVFE---------FARNPDDEMSVLMKRRRRQLAPI 696
Query: 548 INLVHQQRSSKSMEKE-----------------------VEPEADSLM----AKEIKETH 580
++R + MEKE PE D+L A ++ E
Sbjct: 697 QRKAEERR--ELMEKERLAGLTHRIEDQILKGDDFEAGYTVPE-DALKEFEDADKVLEAS 753
Query: 581 GSKRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGL-----NRLEAAVLDLVADDSG 635
K + KTF+DE +F+S H+ A S DQ + L N A DL +DD
Sbjct: 754 NKKSEQKTFRDENFFLS-----HY--APTSAIQDQQYKLSTGFTNAAAEAAYDLNSDDKV 806
Query: 636 GLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHK 694
+ KQ WDK+ KKY+ + + + K + ESG K+ A+ ++G +++W +
Sbjct: 807 QVHKQTATVKWDKKRKKYVNMQGID----NKKYIVGESGQKIAASFRSGKFEEWSKARKL 862
Query: 695 KVYLKGASNEGNAEETTSVPGGRHLGGNNR-----------------KFRGGKNQQRS-- 735
K GA S P + G KFR +Q+
Sbjct: 863 KPLKVGARESTMQTNLLSNPTENNSNGQKTVRGKFKHKQMKSPKLPDKFRDDYEKQKKKV 922
Query: 736 ----VPNAHV--------CSEIKDLDQVRKERQKKADRIAFMKGKTQKGKKF 775
AHV +E+K +Q+RKER K +R A + K +KF
Sbjct: 923 ASALARGAHVKGYSGPGMKNELKSTEQIRKERMAKENRRA-KNARPSKKRKF 973
>gi|403338502|gb|EJY68492.1| hypothetical protein OXYTRI_10894 [Oxytricha trifallax]
Length = 947
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 273/802 (34%), Positives = 436/802 (54%), Gaps = 117/802 (14%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE+ NLS +++AIK+KGY +PTPIQR+ +P+IL G +++AMARTGSGKT +F++P++++
Sbjct: 36 FEAFNLSTFLYKAIKQKGYNLPTPIQRRAIPVILEGFNIIAMARTGSGKTGSFVIPIIEK 95
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L H G R +ILSPTR++A+QT + L +YTDL +L+ GG ME+QFE L NP
Sbjct: 96 LKAHSKVVGARCIILSPTREIAMQTATYFMSLAKYTDLTYALITGGSDMENQFERLLLNP 155
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
DIIIA+PGRLMH + E +SL V+ VV+DE D LF +GFAEQL I ++ ++RQ+LL
Sbjct: 156 DIIIASPGRLMHCIQET-GLSLSQVQLVVYDECDRLFELGFAEQLKSITDRMPKSRQSLL 214
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE--- 261
FSAT+ S + EFA +G++D +V++D D+K+S DLKL F +R EK A LLY++RE
Sbjct: 215 FSATISSQVKEFALSGIKDYKMVQVDRDSKLSDDLKLQFMVVRTGEKAATLLYIMRELIQ 274
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
++ QQ++IF +T++HVEFL+ L G + YG MDQ +R+ ++ FRA+K FLI
Sbjct: 275 DVNEKQQSIIFGATRYHVEFLHELVTRAGFKSVFIYGAMDQRSREERLNIFRAKKVNFLI 334
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
VTD+AARGIDIP L NVI++DFP K K+F+HR GR ARAG+ GT++S +T +++ Y+ DL
Sbjct: 335 VTDLAARGIDIPFLSNVIHYDFPTKMKLFIHRSGRTARAGQKGTSYSIITKKELPYMHDL 394
Query: 382 HLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDS 441
+F+ + PSE L+M+ ++ + +GR PQ +D + ++ S
Sbjct: 395 SIFVGRKYFDKPSEN---LEMNELL------LNPMHICFGRLPQHTVDEYMELYANLLHS 445
Query: 442 -SADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVLEGGELMALAF 500
L LQ++ + Y+KT+ S + L +HP+ + ++ ++ + F
Sbjct: 446 HETALQPLQKSMELSLNKYNKTRDPASMSGVYAASKLQESDIHPLLRLTVDQKQVDFMKF 505
Query: 501 SERLKAFRPK-----QTILEAEGEAARSKH---LQGPSSQWVDVMKKK------------ 540
++LK+F+PK Q+I++ +K LQ ++ + +++
Sbjct: 506 KDQLKSFKPKQSVLEQSIIKTMDYQKINKFQDALQLQDQKYRQIQERREYHKEVQAKFDQ 565
Query: 541 --RAVHEKIINLV--HQQRSSKSMEKEVEPEADSLMAKEIKETHGSKR---------KAK 587
+ + +KII + Q+ +SK ++K EA S+ A+E +E G+ + K +
Sbjct: 566 EQKVLDQKIIEMKTKEQENNSKLLKKRKRAEATSV-AQEEQEIQGNSKIKDQISKMSKKR 624
Query: 588 TFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNR-------------------------- 621
K ++ +N E+ + D G + R
Sbjct: 625 RLKIQKILEDKSLSNFEKESLIEQIKDDGLNIKRQKKSFAGDFRASGQYISNEKGMDGEG 684
Query: 622 --------------------LEAAVLDLVADDSGGLQ--KQKQVYHWDKRGKKYIKLNNG 659
L+ L+L+ DD LQ K K V WD + K+Y+
Sbjct: 685 GDMASRAGKSSLWNDDERNFLDDVTLNLINDDDEMLQHMKGKTVMKWDSKKKRYV----T 740
Query: 660 ERVSASGKVVK---TESGAKV------KATKTGIYKKWKERSHKKVYLKGASNEGNAEET 710
+++ K+VK E+G K+ K YKKW +++H K+ N G+ E++
Sbjct: 741 KKIDGDRKIVKEKRNEAGVKITNKNADKTMDQQFYKKWMQKTHLKL-----QNAGDMEDS 795
Query: 711 TSVPGGRHLGGNNR---KFRGG 729
+ ++ + R FR G
Sbjct: 796 KIIERAKNSNESRRMMKSFRKG 817
>gi|32967636|gb|AAH55026.1| Ddx54 protein, partial [Mus musculus]
Length = 690
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 267/689 (38%), Positives = 401/689 (58%), Gaps = 72/689 (10%)
Query: 113 TKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYV 172
TKELG++T L+ +L++GGD ME QF L +NPDIIIATPGRL+H E+ ++ L+SVEYV
Sbjct: 1 TKELGKFTGLKTALILGGDKMEDQFAALHENPDIIIATPGRLVHVAVEM-NLKLQSVEYV 59
Query: 173 VFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVD 232
VFDEAD LF MGFAEQL +I+G+L QT+LFSATLP L EFA+AGL +P L+RLDVD
Sbjct: 60 VFDEADRLFEMGFAEQLQEIIGRLPGGHQTVLFSATLPKLLVEFARAGLTEPVLIRLDVD 119
Query: 233 TKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLE 292
+K++ LK +F +R++ K A LLY+++ + QT++FV+TKHH E+L L +G+
Sbjct: 120 SKLNEQLKTSFLLVREDTKAAVLLYLLQNVVRPQDQTVVFVATKHHAEYLTELLMGQGVS 179
Query: 293 PSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVH 352
+ Y +DQ ARKI++++F K LIVTD+AARG+DIPLLDNV N+ FP K K+F+H
Sbjct: 180 CAHIYSALDQTARKINLAKFTHNKCSTLIVTDLAARGLDIPLLDNVTNYSFPAKGKLFLH 239
Query: 353 RVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAA-PSEEEVLLDMDGVMSKIDQ 411
RVGR ARAGR+GTA+S V +++ YLLDLHLFL + + A P EE + D G
Sbjct: 240 RVGRVARAGRSGTAYSLVAPDEVPYLLDLHLFLGRSVTLARPCEEPSVADAVGR------ 293
Query: 412 AIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESI 471
+ + GR PQ+V+D ++ + +S DL L R NA + Y +++P PS ESI
Sbjct: 294 -----DGVLGRVPQSVVDDEDSSLQTAMGASLDLQGLHRVANNAQQQYVRSRPAPSPESI 348
Query: 472 RRGK--DLPREGLHPMFKNVLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGP 529
+R K DL GLHP+F + E GEL L + +K +R + TI E + + P
Sbjct: 349 KRAKELDLAELGLHPLFSSCFEEGELQRLRLVDSIKNYRTRTTIFEINASS------KDP 402
Query: 530 SSQWVDVMKKKRAVHEKIINLVHQQRSSKSMEKEVEPEADSLMAKEIKE----------- 578
SSQ +M+ KR K + Q+R + E AD +E+ +
Sbjct: 403 SSQ---MMRAKRQRDRKAVASFQQRRQERQ-----EGPADPAPQRELPQEEEEEMVETVE 454
Query: 579 ----------------THGSKRKAKTF--KDEEYFISSVPTNHHMEAGLSVRSDQGFGLN 620
+ G+KR+ +D+E+++ P + E GLSV G
Sbjct: 455 GVFTEVVGQKRPRPGPSQGAKRRRMETRQRDQEFYVPYRPKDFDSERGLSVSGAGGAFEQ 514
Query: 621 RLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT 680
++ AVLDL+ D++ + + +Q WD++ K+++ G+ K +KTESG + ++
Sbjct: 515 QVAGAVLDLMGDEAQNMSRGQQQLKWDRKKKRFV----GQSGQEDKKKIKTESGRFISSS 570
Query: 681 -KTGIYKKWKERSHKKVYLKGASNEGNAEETTSVPGGRHLGGNNRKFRGGKNQQR--SVP 737
K +Y+KWK++ +K+ + + EG + + P G ++ G +Q R SVP
Sbjct: 571 YKRDLYQKWKQK--QKIDDRDSEEEGPSNQRGPGPRRGGKRGRSQ----GTSQPRASSVP 624
Query: 738 NAHVCSEIKDLDQVRKERQKKADRIAFMK 766
+ SE+K +Q+ K+R ++A + F++
Sbjct: 625 AGRMRSELKTKEQILKQR-RQAQKQRFLQ 652
>gi|68465679|ref|XP_723201.1| likely DEAD box ATP-dependent RNA helicase [Candida albicans
SC5314]
gi|68465972|ref|XP_723054.1| likely DEAD box ATP-dependent RNA helicase [Candida albicans
SC5314]
gi|74680391|sp|Q5ANB2.1|DBP10_CANAL RecName: Full=ATP-dependent RNA helicase DBP10
gi|46445068|gb|EAL04339.1| likely DEAD box ATP-dependent RNA helicase [Candida albicans
SC5314]
gi|46445224|gb|EAL04494.1| likely DEAD box ATP-dependent RNA helicase [Candida albicans
SC5314]
gi|238880918|gb|EEQ44556.1| hypothetical protein CAWG_02828 [Candida albicans WO-1]
Length = 908
Score = 447 bits (1150), Expect = e-122, Method: Compositional matrix adjust.
Identities = 287/755 (38%), Positives = 413/755 (54%), Gaps = 103/755 (13%)
Query: 18 KKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77
KK+K+G F S L+ + I +KGYK PTPIQRKT+PLI+ G DVV MARTGSGKTAAF
Sbjct: 94 KKAKAGSFASFGLTKFILANIAKKGYKQPTPIQRKTIPLIMEGRDVVGMARTGSGKTAAF 153
Query: 78 LVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF 137
++P+++RL P GGVRA+ILSP+R+LALQT K KE T+L+ +L+GGDS+E F
Sbjct: 154 VLPLIERLKSRQP-GGVRAVILSPSRELALQTYKQVKEFSHGTNLQSIVLIGGDSLEEDF 212
Query: 138 EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS 197
++ PDII+ TPGR +H E++ L +V+Y+VFDEAD LF MGFAEQL+++L L
Sbjct: 213 SKMMTKPDIIVCTPGRFLHLKVEMQ-YDLMTVQYIVFDEADRLFEMGFAEQLNELLASLP 271
Query: 198 ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLY 257
NRQ+LLFSATLP +L +FAKAGL +P LVRLD ++KIS L++A+FT ++ E+ A LLY
Sbjct: 272 SNRQSLLFSATLPRSLVDFAKAGLTNPVLVRLDAESKISDQLQMAYFTTKKNEREANLLY 331
Query: 258 MIREHI----SSDQQ--------------------------------------------- 268
+++E I S++Q
Sbjct: 332 ILQEVIKMPLGSEEQIKKLKDMDKRKIDSDSEDDDDDEERKKGKKRYKFKKERLPPANRL 391
Query: 269 -----TLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
T++FV TKHHVE++ L R+ G S YG +DQ ARK + +FR T L+VT
Sbjct: 392 PSPHSTIVFVPTKHHVEYVTKLLRDAGYLVSYIYGTLDQHARKNQLYQFRVGLTNVLVVT 451
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHL 383
DVAARGIDIP+L NVIN+ P KIF+HRVGR ARAG G A+S V +++ YLLDL L
Sbjct: 452 DVAARGIDIPVLANVINFTLPASSKIFIHRVGRTARAGNKGWAYSIVNEKELPYLLDLEL 511
Query: 384 FLSKPIRAAPSEEE--VLLDMDGVMSKIDQAIANGE-TIYGRFPQTVIDLVSDRVREIID 440
FL K I E +L + I + E + G P+ ++ + ++
Sbjct: 512 FLGKKILLTSMHEAKVEMLKKSSTGTFIPPVVNYTERLVLGSVPRVDLETFQELYENLLR 571
Query: 441 SSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGL---HPMFKNVLEGGELMA 497
++ ++ L+ +LY +T+ S+ES++R K++ H +F LE +
Sbjct: 572 NNYEIKVLKDVAAKGEKLYHRTRQPASQESLKRSKEIIESSWDDQHLLFGENLEKQK--- 628
Query: 498 LAFSERLKAFRPKQTILEAEG------EAARSKHLQGPSSQWVDVMKKKRAVHEKIINLV 551
AF +L+ KQT+ E +G E + Q Q +K+ E++ L
Sbjct: 629 DAFLAKLQDRNSKQTVFELKGSDESLVEFMNRRRRQLAPIQRKAKERKELLAKERLAGLT 688
Query: 552 HQQRSSKSMEKEVEPEAD-----SLMAKEIKETHGSKRKAKTFKDEEYFISSVPTNHHME 606
H +E E+ AD + E++E K K+F+D ++F+S H+
Sbjct: 689 H------GIEDEI-LRADGENGYGVDEDELQEAFEDADKKKSFRDPQFFLS-----HYAP 736
Query: 607 AGLSVRSDQGFGL-----NRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGER 661
A SV DQ L N +AA DL DD +Q KQV WDK+ KYI
Sbjct: 737 A--SVIQDQQLSLSTSFANEAQAATFDLDNDDK--IQTNKQVMRWDKKKGKYINSK---- 788
Query: 662 VSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKK 695
S K + +E+G K+ A+ ++G + +W+++ + K
Sbjct: 789 -STDKKYIISENGTKIPASFRSGKFDEWRKQRNLK 822
>gi|71651136|ref|XP_814251.1| ATP-dependent RNA helicase [Trypanosoma cruzi strain CL Brener]
gi|70879209|gb|EAN92400.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
Length = 861
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 275/822 (33%), Positives = 440/822 (53%), Gaps = 101/822 (12%)
Query: 15 KQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKT 74
+Q KK + GGF+SL L V + R GY VPTPIQRK +P ++ G+DVVAMARTGSGKT
Sbjct: 57 QQSKKKRGGGFQSLGLEKPVLDGVLRLGYNVPTPIQRKAIPPMIQGSDVVAMARTGSGKT 116
Query: 75 AAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSME 134
AAFLVPML L H G+R L+L+PTR+L+LQ L+F +L ++ DLR + LVGG+S+E
Sbjct: 117 AAFLVPMLNLLKSHSKTVGIRGLVLAPTRELSLQILRFGIQLNKFLDLRFAALVGGNSLE 176
Query: 135 SQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILG 194
QFE L NPDI++ATPGRL+H + E + L V+ +V DEAD LF +G Q+ ++
Sbjct: 177 QQFELLGSNPDIVVATPGRLLHIMEEA-SLKLSMVKCLVLDEADRLFELGLQPQIVAVMQ 235
Query: 195 QLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAA 254
++ + Q LFSAT+PS LAEF AGL +P ++RLD + K+S LK + F +R +EK AA
Sbjct: 236 KVPDACQRALFSATMPSVLAEFTSAGLHNPVVIRLDAEMKLSDKLKQSAFFVRNDEKVAA 295
Query: 255 LLYMIREHI------SSD---QQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDAR 305
L+ ++++ I +SD QQ LIFV +K HV++L ++ + S +G MDQ+AR
Sbjct: 296 LIVLLKKVIGVAAGDTSDGTAQQALIFVESKFHVDYLQMIMEAYLISCSAVHGQMDQEAR 355
Query: 306 KIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGT 365
+ V F R+T +IVTDVAARG+D+PLLDNV+N+ FP PK+FVHRVGR ARAGR+G
Sbjct: 356 RNAVQAFSRRETHVMIVTDVAARGLDLPLLDNVVNFSFPSTPKLFVHRVGRVARAGRSGA 415
Query: 366 AFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQ 425
A+SF+T ED Y +DL F+ +P++ +E ++L D + +GR P+
Sbjct: 416 AYSFLTFEDFPYYVDLMAFIDRPLQCRRTEGDLLFTAD-------------DGCFGRMPE 462
Query: 426 TVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK----DLPREG 481
+ L D +R + ++ ++ + NA + +++TK + I+ +
Sbjct: 463 EDLQLELDFLRRLALEDVEVRNMAKVVDNAHKKFTRTKKKATHYGIQEARQEKYQFDNTP 522
Query: 482 LHPMFKNVLEGGELMALAFSERLKAFRPKQTILEA------------------------- 516
LHP+F LE + A LK F+ K+++LE
Sbjct: 523 LHPIFVERLEAKRIAADEARFDLKRFKAKESVLEMIHGEKMFEIMKPVTIQTLWKEQREQ 582
Query: 517 --EGEAARSKHLQGPSSQWVD----------VMKKKRAVHEKIINLVHQQRSSKSMEKE- 563
E +AA K Q D V +KK ++ EK++ +++ + E +
Sbjct: 583 ADEDDAATGKGAAEEEPQKSDRAKITKRDVTVPEKKLSLGEKLLLRAQERKKRERQEMDG 642
Query: 564 VEPEADSLMAKEIKETHGSKRK----AKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGL 619
E D++ + H + + + ++D++YF+ + + +A SV+
Sbjct: 643 ATNEEDAVTVYPTRSMHRFESEYGGGSGKYRDQDYFMDTTKRSTMEDAHYSVKD------ 696
Query: 620 NRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVK- 678
A D+ A+ + Q+Q+QVY W K+ +++++N + A + VK E+G V
Sbjct: 697 -----ATFDVGAESAQEAQQQRQVYAWSKKKNRFVRMNVND-AKAMLRGVKNEAGKAVNF 750
Query: 679 ATKTGIYKKWKERSHKKVYLKGASNEGNAEETTSVPGGRHLGGNN--------------- 723
+K Y +W ++S+ ++ G + + GG N
Sbjct: 751 KSKLEAYSRWMKKSNMRIQDVGEEEDLGPLHRARAAQEQGTGGYNHDGDDDDDTVDISDP 810
Query: 724 ---RKFRGGKNQQRSVPNAHVCSEIKDLDQVRKERQKKADRI 762
+K R G+ Q+R + H+ + +++ ++++ +K+ R+
Sbjct: 811 NQGKKLRVGRKQRRLPKDGHIRT-FEEMAHIKRKAEKERARL 851
>gi|409044923|gb|EKM54404.1| hypothetical protein PHACADRAFT_258225 [Phanerochaete carnosa
HHB-10118-sp]
Length = 852
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 293/813 (36%), Positives = 440/813 (54%), Gaps = 109/813 (13%)
Query: 28 LNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGA--DVVAMARTGSGKTAAFLVPMLQRL 85
+ L P + R++ +G+++PTPIQR ++P +L+ D+V MARTGSGK+ A+L+P++QRL
Sbjct: 1 MGLYPWLLRSLTLQGFRIPTPIQRLSIPALLTNPPRDLVGMARTGSGKSLAYLIPLVQRL 60
Query: 86 N-QHVPQGGVRALILSPTRDLALQTLKFTKEL----------------GRYTD----LRI 124
+H G RALIL P R+LALQ LK KEL G Y+ LR
Sbjct: 61 GGRHSTAFGARALILLPARELALQVLKVGKELSRGYHAGEGEHAGDKEGEYSKKGQALRW 120
Query: 125 SLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG 184
L+VGG+ M+ QFE ++ NPD+IIATPGRL+H + E+ ++ KSV+YVVFDEAD LF MG
Sbjct: 121 GLIVGGEGMDEQFEMMSNNPDVIIATPGRLLHLIVEM-NLDFKSVQYVVFDEADRLFEMG 179
Query: 185 FAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFF 244
F L +IL +L +RQTLLFSATLP +L EFAKAGL++P LVRLD + KIS DL++AFF
Sbjct: 180 FETALTEILHRLPASRQTLLFSATLPKSLVEFAKAGLQNPKLVRLDAEGKISTDLRIAFF 239
Query: 245 TLRQEEKHAALLYMIR--------------------------------EHISSDQQTLIF 272
+++Q EK A+LL ++R +++++ QTL+F
Sbjct: 240 SVKQAEKEASLLILLRDVIGVPLGSNKKKESEESTDKKGKGKARAKHSDYVTAPHQTLVF 299
Query: 273 VSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDI 332
+TKHHVE+L L G S YG +DQ AR + FR T L+VTDVAARGIDI
Sbjct: 300 AATKHHVEYLTNLLTSAGYAVSHIYGSLDQAARTQQMEHFRRGYTSILVVTDVAARGIDI 359
Query: 333 PLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAA 392
P+L+NV+N+DFP ++FVHRVGR ARAGRTG A+SF+T+ ++ YLLDL LFL +PI++
Sbjct: 360 PVLENVVNYDFPQGARVFVHRVGRTARAGRTGWAWSFITNSELPYLLDLQLFLGRPIKS- 418
Query: 393 PSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTC 452
EV D D + I G F + +D + ++++ + +L L+
Sbjct: 419 ----EVATDGDQPYTD--------SLILGPFDRDRVDEEVEYIKKLDEEDHNLAPLREVM 466
Query: 453 TNAFRLYSKTKPLPSKESIRRGKDL---PREGL-------HPMFKNVLEGGELMALAFSE 502
+Y ++K S+ S R K + P+ GL HP+ +G + E
Sbjct: 467 RKGHGMYERSKGKASQASYNRAKVMMKEPKNGLMGLTSTPHPVLLRSKDGSSIAKKLGEE 526
Query: 503 R--------LKAFRPKQTILE--AEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVH 552
+ + AFRP +T+LE A G A + ++ ++++ L +
Sbjct: 527 KRRKELLMAVSAFRPAETVLEIGARGNAETAALMKQRRKALSRAAQRQQNASTSATTLKN 586
Query: 553 QQRSSKSME---KEVEPEADSLMAKEIKETHGSKRKAKTFKDEEYFISSVPTNHHMEAGL 609
S E +EVE + +A + + +D EY++S + + + G
Sbjct: 587 DDEESHEDEGRREEVEMADEEQIAAVFDPGDKRNKDKDSHRDSEYYMSHYQKDANTDKGY 646
Query: 610 SVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQV-YHWDKRGKKYIKLNNGERVSASGKV 668
S+R F + + DL D++ LQ++K+ HWDK KK++K GE + K+
Sbjct: 647 SLRDGASFA-EQAKNVTFDLGLDEA--LQERKRRDLHWDKTKKKFVK-GTGEGAD-NVKL 701
Query: 669 VKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNAEETTSVPGGRHLGGNNRKFR 727
VKTESG K+ AT ++G + +WK +S + G + + S +G RK++
Sbjct: 702 VKTESGVKLPATYRSGRFDEWKAKSRVSLPRIGEAEAAGPQRHGS------MGAGGRKWK 755
Query: 728 GGKNQQRSVPNAHVCSEIKDLDQVRKERQKKAD 760
NQ + H S KD ++ ++ +KKA+
Sbjct: 756 --HNQVQEAKPLHKLS--KDYERKARQLKKKAE 784
>gi|336371386|gb|EGN99725.1| hypothetical protein SERLA73DRAFT_88322 [Serpula lacrymans var.
lacrymans S7.3]
gi|336384141|gb|EGO25289.1| hypothetical protein SERLADRAFT_437047 [Serpula lacrymans var.
lacrymans S7.9]
Length = 962
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 304/826 (36%), Positives = 440/826 (53%), Gaps = 131/826 (15%)
Query: 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGA--DVVAMARTGSGKTAAFLVP 80
G F+S+ L P++ R++ +GY+ PTPIQR +P +L+ D+V MARTGSGK+ A+++P
Sbjct: 98 GSFQSMGLHPSLLRSLTLQGYRTPTPIQRLAIPSLLANPPRDLVGMARTGSGKSLAYMIP 157
Query: 81 MLQRLN-QHVPQGGVRALILSPTRDLALQTLKFTKELGR--------------------Y 119
+ QRL+ +H G RALIL P R+LALQ L+ K+L R
Sbjct: 158 LAQRLSGRHASTFGARALILLPARELALQVLRVGKDLTRGWHSSEGAHAGDGKGEDGGKG 217
Query: 120 TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179
LR L+VGG+ ++ QFE + NPD+IIATPGRL+H + E+ ++ LKSVEYVVFDEAD
Sbjct: 218 QSLRWGLVVGGEGLDEQFEMITSNPDVIIATPGRLLHLIVEM-NLDLKSVEYVVFDEADR 276
Query: 180 LFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDL 239
LF MGF L++IL +L +RQTLLFSATLP +L EFAKAGL+DP LVRLD ++KIS DL
Sbjct: 277 LFEMGFETALNEILHRLPPSRQTLLFSATLPKSLVEFAKAGLQDPKLVRLDAESKISTDL 336
Query: 240 KLAFFTLRQEEKHAALLYMIREHI---------------------------------SSD 266
++AFF+++Q EK A LL ++R+ I ++
Sbjct: 337 RMAFFSIKQAEKDACLLSLLRDVIRVPLGSTVPESNTTTSTSTRSRNDKGKRKEQQHTAP 396
Query: 267 QQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVA 326
QTLIF +TKHHVE+L+ L G S YG +DQ AR + FR T L+VTDVA
Sbjct: 397 HQTLIFAATKHHVEYLSQLLAAVGYAVSHIYGALDQGARTQQMDHFRRGLTSILVVTDVA 456
Query: 327 ARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLS 386
ARGIDIP+L+NV+N+DFP ++FVHRVGR ARAGR G A+SFVTS ++ YLLDL LFL
Sbjct: 457 ARGIDIPVLENVVNYDFPHGARVFVHRVGRTARAGRKGWAWSFVTSTELPYLLDLQLFLG 516
Query: 387 KPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLN 446
+P+ + V + + G F + ID + VR + + L
Sbjct: 517 RPL------------TNEVPKGAGEEAYTSSLVLGTFQRENIDEDVEYVRALDAAHHSLP 564
Query: 447 SLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPRE-----------GLHPMFKNVLEGGEL 495
+L+ LY ++K S+ S +R K++ + G+HP+ GE
Sbjct: 565 TLREVMRRGQGLYERSKGKASQASYKRAKEMGKSGQWALAGAVEAGVHPVLMMRGGVGEK 624
Query: 496 MALAFSERLK------AFRPKQTILEAEGEAARSK-HLQGPSSQWVDVMKKKR-AVHEKI 547
ER K AF+P +T+ E AA+ K G +S +MK++R A+ +
Sbjct: 625 AIDMQEERKKLMKVVNAFKPAETVFEV---AAKGKGKTNGANSL---LMKERRKALQKSA 678
Query: 548 INLVHQQRSSKSMEKEVEPE-------------ADSLMAKEIKETHGSKRKAKTFKDEEY 594
S+ + + E + E AD + +T KR +++DEE+
Sbjct: 679 ARATLASTSAAAPDSEDDAELGEDHSEREEVEMADEQDIATVFQTSNKKRGKDSYRDEEF 738
Query: 595 FISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYI 654
F+S + E G S+ + A DL D++ ++Q+ WDK+ KK+I
Sbjct: 739 FMSHYQKDALTEKGYSLNDGASSFAEQARGATFDLAGDEATVAERQRHKQTWDKKKKKFI 798
Query: 655 KLNNGERVSASG-KVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNAEETTS 712
K G+ V A K+V+TESG ++ AT ++G + +WK +S +V L G AE+
Sbjct: 799 K---GDGVGADNVKLVRTESGTRLPATYRSGRFDEWKAKS--RVSL---PKVGEAEQERH 850
Query: 713 VPGGRHLGGNNRKFRGGKNQQRSVPNAHVCSEIKDLDQVRKERQKK 758
G LG RK++ K E K LD++ K+ ++K
Sbjct: 851 ---GSKLGPGGRKYKHNK-----------IVEGKPLDKLSKDYERK 882
>gi|430811574|emb|CCJ30960.1| unnamed protein product [Pneumocystis jirovecii]
Length = 906
Score = 444 bits (1141), Expect = e-121, Method: Compositional matrix adjust.
Identities = 242/536 (45%), Positives = 338/536 (63%), Gaps = 49/536 (9%)
Query: 14 EKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGK 73
EKQ+K + S + LS + +AIK KG+K+PTPIQRKT+PL+L+G DVVAMARTGSGK
Sbjct: 355 EKQRKINSSRFKTMVGLSLTILKAIKYKGFKIPTPIQRKTIPLLLNGMDVVAMARTGSGK 414
Query: 74 TAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSM 133
TAAF++PM++RL H + G RALILSP R+LALQT K KEL + T+L+ LLVGG+S+
Sbjct: 415 TAAFVIPMIERLKMHQAKVGSRALILSPNRELALQTFKVVKELKKGTNLKHILLVGGESL 474
Query: 134 ESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKIL 193
E QFE ++ NPDII+ATPGR +H E+ D+ L+++EY+VFDEAD LF MGF+EQL +IL
Sbjct: 475 EEQFEIMSINPDIIVATPGRFLHLKVEM-DLDLRTIEYIVFDEADRLFEMGFSEQLSEIL 533
Query: 194 GQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHA 253
L +RQ+ LFSATLP +L EFAKAGL++P L+RL+V++ IS DL+ AFF+++ EK A
Sbjct: 534 RYLPVSRQSSLFSATLPKSLVEFAKAGLQNPVLIRLNVESMISDDLQSAFFSIKSSEKEA 593
Query: 254 ALLYMIREHIS---SDQQ--------------------------TLIFVSTKHHVEFLNV 284
L Y++ E I QQ T+IFVST+HHVE+L
Sbjct: 594 GLFYLLHEVIKVPRGTQQVTDFNSKKTNKEKSSTHNHEALLPYSTIIFVSTRHHVEYLAK 653
Query: 285 LFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFP 344
L G S YG +DQ AR+ ++ FRA KT L+VTD+AARGIDIPLL NVIN+DFP
Sbjct: 654 LLSFSGYLVSYIYGSLDQVARRNQIASFRAGKTTLLVVTDIAARGIDIPLLSNVINYDFP 713
Query: 345 PKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDG 404
KPK FVHRVGR ARAG+ G A+S V +ED+ YL++L +FL + I ++ + D
Sbjct: 714 SKPKTFVHRVGRTARAGQKGWAYSLVKTEDVPYLIELQIFLGRKIISSNDR-----NPDY 768
Query: 405 VMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKP 464
V + + G F + ++ + + ++ + +SL++ LYSKT
Sbjct: 769 VQN----------IVLGTFIREKLEYYCEWIAHVLKEDNECSSLKKVMQKGEILYSKTAG 818
Query: 465 LPSKESIRRGKDLPREG----LHPMFKNVLEGGELMALAFSERLKAFRPKQTILEA 516
S ES RR K+L + ++P+ + ++ A ++ + P +T+L+
Sbjct: 819 NASTESNRRAKELIKSSEWSHVNPLLVEHVHENDIAREALLVKISGYSPHETVLDC 874
>gi|430814638|emb|CCJ28161.1| unnamed protein product [Pneumocystis jirovecii]
Length = 772
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 242/536 (45%), Positives = 338/536 (63%), Gaps = 49/536 (9%)
Query: 14 EKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGK 73
EKQ+K + S + LS + +AIK KG+K+PTPIQRKT+PL+L+G DVVAMARTGSGK
Sbjct: 221 EKQRKINSSRFKTMVGLSLTILKAIKYKGFKIPTPIQRKTIPLLLNGMDVVAMARTGSGK 280
Query: 74 TAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSM 133
TAAF++PM++RL H + G RALILSP R+LALQT K KEL + T+L+ LLVGG+S+
Sbjct: 281 TAAFVIPMIERLKMHQAKVGSRALILSPNRELALQTFKVVKELKKGTNLKHILLVGGESL 340
Query: 134 ESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKIL 193
E QFE ++ NPDII+ATPGR +H E+ D+ L+++EY+VFDEAD LF MGF+EQL +IL
Sbjct: 341 EEQFEIMSINPDIIVATPGRFLHLKVEM-DLDLRTIEYIVFDEADRLFEMGFSEQLSEIL 399
Query: 194 GQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHA 253
L +RQ+ LFSATLP +L EFAKAGL++P L+RL+V++ IS DL+ AFF+++ EK A
Sbjct: 400 RYLPVSRQSSLFSATLPKSLVEFAKAGLQNPVLIRLNVESMISDDLQSAFFSIKSSEKEA 459
Query: 254 ALLYMIREHIS---SDQQ--------------------------TLIFVSTKHHVEFLNV 284
L Y++ E I QQ T+IFVST+HHVE+L
Sbjct: 460 GLFYLLHEVIKVPRGTQQVTDFNSKKTNKEKSSTHNHEALLPYSTIIFVSTRHHVEYLAK 519
Query: 285 LFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFP 344
L G S YG +DQ AR+ ++ FRA KT L+VTD+AARGIDIPLL NVIN+DFP
Sbjct: 520 LLSFSGYLVSYIYGSLDQVARRNQIASFRAGKTTLLVVTDIAARGIDIPLLSNVINYDFP 579
Query: 345 PKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDG 404
KPK FVHRVGR ARAG+ G A+S V +ED+ YL++L +FL + I ++ + D
Sbjct: 580 SKPKTFVHRVGRTARAGQKGWAYSLVKTEDVPYLIELQIFLGRKIISSNDR-----NPDY 634
Query: 405 VMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKP 464
V + + G F + ++ + + ++ + +SL++ LYSKT
Sbjct: 635 VQN----------IVLGTFIREKLEYYCEWIAHVLKEDNECSSLKKVMQKGEILYSKTAG 684
Query: 465 LPSKESIRRGKDLPREG----LHPMFKNVLEGGELMALAFSERLKAFRPKQTILEA 516
S ES RR K+L + ++P+ + ++ A ++ + P +T+L+
Sbjct: 685 NASTESNRRAKELIKSSEWSHVNPLLVEHVHENDIAREALLVKISGYSPHETVLDC 740
>gi|328864018|gb|EGG13117.1| hypothetical protein MELLADRAFT_32308 [Melampsora larici-populina
98AG31]
Length = 966
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 318/894 (35%), Positives = 468/894 (52%), Gaps = 179/894 (20%)
Query: 10 LKRREKQKKKSKS----GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGA--DV 63
LK R ++ +KS + G F+SL L P + RAI +G+ PTPIQR +P IL+ DV
Sbjct: 98 LKSRHQKNQKSNTLTGGGSFQSLGLHPALLRAILLRGFTTPTPIQRAVLPHILASPARDV 157
Query: 64 VAMARTGSGKTAAFLVPMLQRLN-QHVPQGGVRALILSPTRDLALQTLKFTKELGR---- 118
V MARTGSGKT A+L+P++ +L +H GVRAL++ PTR+LA+Q LK K+L +
Sbjct: 158 VGMARTGSGKTLAYLIPLIHKLGGRHNVLFGVRALVMVPTRELAVQVLKVGKDLAKGFVQ 217
Query: 119 ---------------YTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVED 163
LR L+VGGDS+E QF A NPD+IIATPGRL+H E+ +
Sbjct: 218 GGGTQTGNEEEGGGKGEGLRWGLIVGGDSLEEQFAMFASNPDVIIATPGRLLHLAVEM-N 276
Query: 164 MSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRD 223
+ LKSV+Y+VFDEAD LF MGF QLH+ L +L +RQTLLFSATLP L EFAKAGL++
Sbjct: 277 LDLKSVQYIVFDEADRLFEMGFETQLHETLSRLPHSRQTLLFSATLPKTLVEFAKAGLQN 336
Query: 224 PHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS------------------- 264
P LVRLD ++KIS DL++ F +++ EK A LL ++ + I
Sbjct: 337 PKLVRLDSESKISSDLQMGFLSIKPNEKDAGLLVILADVIGVPKSDGTEIEVEDYEDHDT 396
Query: 265 ----------------------------SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVC 296
+ QT++F +TKHHVE+L L G S
Sbjct: 397 PYNRRQQLQAKRFDKKSSKGKFNPNPELAPHQTIVFAATKHHVEYLTGLLVSAGYRVSHI 456
Query: 297 YGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGR 356
YG +DQ AR+ ++ FRA +T L+VTD+AARGIDIP+L+NVIN+DFP + FVHRVGR
Sbjct: 457 YGALDQAARRNQLNAFRAGRTNILVVTDLAARGIDIPILENVINYDFPSSARAFVHRVGR 516
Query: 357 AARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANG 416
ARAGR G A+S VT ++ YL+DL LFLS+P+ P EV + D +
Sbjct: 517 TARAGRKGWAYSLVTQTELPYLMDLQLFLSRPLLTCPLHPEVSQNPD----------FSA 566
Query: 417 ETIYGRFPQTVIDLVSDRVRE-IIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK 475
+ G P+ +D ++ VRE ++ ++ L +L A ++Y +++ S ES RR K
Sbjct: 567 NLVLGTLPRERLDSEAEYVRETLVGPNSSLVALTEVVRRAQKMYIRSQSTASAESYRRSK 626
Query: 476 D--LPREGL----------HPMFKNVLEGGELMALAFSER-----------LKAFRPKQT 512
L EGL HP+F E +A S+R + F P +T
Sbjct: 627 ALVLAGEGLTGTSKEEAATHPIFG--APSPETVAALTSKRKGPSRDELLAKVNKFTPTET 684
Query: 513 ILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIIN----LVHQQRSSKSMEKE----V 564
+ E R K P++Q +M+ +R K+I+ + +Q ++ KE +
Sbjct: 685 VFEI---GTRGK---SPAAQ---LMRDRRKSMGKVISKRAAVTKEQEDEQTSTKESYALI 735
Query: 565 EPEADSLMAK-----------EIKETHGSKRKAK-----TFKDEEYFISSVPTNHHMEAG 608
E + SL + E+++ RK K ++KD E +++ + + G
Sbjct: 736 EAQKSSLKSSKTKPSEVATEVELEDAFEMPRKRKKSGPTSYKDPEVYLT------YEQDG 789
Query: 609 LSVRSDQGFGLN---------RLEAAVLDLVADDSG-----GLQKQKQVYHWDKRGKKYI 654
+ +++G+ LN + A DL ADD G +QK QV WD+R KK++
Sbjct: 790 AA--AEKGYNLNEGTAPSFVAQANAYGFDLGADDEGRFSTTTVQKASQV-RWDRRTKKFV 846
Query: 655 KLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKV------YLKGASNEGNA 707
K N G + + K+VKTESGAK+ A+ K+G++ W+++ ++ +KG +
Sbjct: 847 KSNQGG--TDNVKLVKTESGAKLPASFKSGVFDDWQKKEKVRIPNVGETEMKGRNQMDYR 904
Query: 708 EETTSVPGGRHLGGNNRKFRGGKNQQRSVPNAHVCSEIKDLDQVRKERQKKADR 761
T GG G + + +G +S+ NA +K+++Q+RKER K R
Sbjct: 905 PTHTVTRGGIGGGAHLKGKKGKGRPGQSIRNAG----LKNVEQIRKERDMKDRR 954
>gi|254578362|ref|XP_002495167.1| ZYRO0B04972p [Zygosaccharomyces rouxii]
gi|238938057|emb|CAR26234.1| ZYRO0B04972p [Zygosaccharomyces rouxii]
Length = 979
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 313/897 (34%), Positives = 461/897 (51%), Gaps = 160/897 (17%)
Query: 16 QKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTA 75
+ KK K G F S S + I +KG++ PTPIQRKT+PLIL D+V MARTGSGKTA
Sbjct: 116 ESKKHKKGSFPSFGFSKFILNNINKKGFRQPTPIQRKTIPLILQNRDIVGMARTGSGKTA 175
Query: 76 AFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMES 135
AF++PM+++L H + G RA+ILSP+R++A+QT K KE + +DLR LL GGDS+E
Sbjct: 176 AFVLPMIEKLKAHSSKIGARAVILSPSREIAMQTYKVFKEFSKGSDLRSVLLTGGDSLED 235
Query: 136 QFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQ 195
QF + NPD+++ATPGR +H E+ +++LKSVEY VFDEAD LF MGFAEQL+++L
Sbjct: 236 QFGMMMSNPDVVVATPGRFLHLKVEM-NLNLKSVEYAVFDEADRLFEMGFAEQLNELLAS 294
Query: 196 LSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAAL 255
L E RQTLLFSATLP+ L +FAKAGL +P LVRLD ++KIS +L++ F + + +E+ A L
Sbjct: 295 LPEKRQTLLFSATLPNTLVDFAKAGLTNPVLVRLDAESKISENLEMLFVSTKHDEREANL 354
Query: 256 LYMIREHI----SSDQQTLI---------------------------------------- 271
Y+++E I ++++Q +I
Sbjct: 355 FYLLQEVIKIPLATEEQKMILGEGNKALSDSEDSDAENGKKDRRKKGKKNKAKRPKLPSA 414
Query: 272 -----------FVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
FV T+HHVE+++ L + G S YG +DQ AR+ + FRA T L
Sbjct: 415 NELPSEKATIVFVPTRHHVEYISQLLKACGYLVSYIYGTLDQHARRRQLYNFRAGLTSIL 474
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLD 380
+VTDVAARG+DIP+L NVIN+ P KIFVHRVGR ARAG G A+S V+ ++ YLLD
Sbjct: 475 VVTDVAARGVDIPMLANVINFTMPSSSKIFVHRVGRTARAGNRGWAYSIVSESELPYLLD 534
Query: 381 LHLFLSKPIRAAPSEEEV--LLDMDGVMSKIDQ-------AIANGETIYGRFPQTVIDLV 431
L LFL K I AP E LL V D+ + G P+ ++ +
Sbjct: 535 LELFLGKKILLAPMYEATCNLLKEKWVNEGNDEFRFQPPKVSYTDRMVLGSCPRIELESM 594
Query: 432 SDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVLE 491
D + ++DS+ DL S + A +Y +T+ S ES++R K + G +N+L
Sbjct: 595 GDLYKNLMDSNYDLGSTRGVSIKAEIMYMRTRQPASAESMKRAKQMIISGWDE--QNILF 652
Query: 492 GGELMAL--AFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIIN 549
G + A F +L+ R K+T+ E + P + +MKK+R E +
Sbjct: 653 GKNMEAEKNKFLAKLQDRRNKETVFE---------FARNPDDKMSVLMKKRRQQLEP-VQ 702
Query: 550 LVHQQRS-----------SKSMEKEV-----------EPEA------DSLMAKEIKETHG 581
L +QR + S+E EV P+A D+ E +ET G
Sbjct: 703 LRAKQRQELMEKEKLAGLTHSLEDEVLDKYKGEVGYSVPDAVLEEFEDADQVLEDQETEG 762
Query: 582 --SKRKAKTFKDEEYFISS-VPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQ 638
K+K+K+FKD +F+S P ++ L++ S GF + +A+ DL DD +
Sbjct: 763 KKQKQKSKSFKDSNFFMSHYAPAQSVQDSQLNISS--GFTTDAAQAS-YDLNDDDKIQVH 819
Query: 639 KQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVY 697
KQ WDK+ KKY+ + V + + +ESG K+ A+ ++G + +W ++ K+
Sbjct: 820 KQTATVKWDKKKKKYVNPQGADNV----RYITSESGQKIPASYRSGKFDEWSKKRKLKMP 875
Query: 698 LKGASNEGNAEETTSVPGGRHLGGNNRKFRGGKNQQRSVPNAH----------------- 740
G+ A P + NNR+F + + VP+ +
Sbjct: 876 KVGSRESSMATNLLQDPTRGNPSSNNRRFMHKQVKAPKVPDKYRDDYGKQKTKVAKALEK 935
Query: 741 ------------VCSEIKDLDQVRKERQKKADRIAFMKGKTQKGKKFSKNGKRGKPR 785
+ +E++ DQ+RK+R K K+ +KN + GK R
Sbjct: 936 GIHVKGHNNAPGMTNELRSADQIRKQR-------------VVKDKRRAKNARVGKKR 979
>gi|71649079|ref|XP_813297.1| ATP-dependent RNA helicase [Trypanosoma cruzi strain CL Brener]
gi|70878168|gb|EAN91446.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
Length = 903
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 274/824 (33%), Positives = 437/824 (53%), Gaps = 101/824 (12%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
+++Q KK + GGF+S L V + R GY VPTPIQRK +P + G+DVVAMARTGSG
Sbjct: 97 QDQQPKKKRGGGFQSFGLDKPVLDGVLRLGYNVPTPIQRKAIPPMTQGSDVVAMARTGSG 156
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTAAFL+PML L H G+R L+L+PTR+L+LQ L+F +L ++ DLR + LVGG+S
Sbjct: 157 KTAAFLIPMLNLLKSHSKTVGIRGLVLAPTRELSLQILRFGIQLNKFLDLRFAALVGGNS 216
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
+E QFE L NPDI++ATPGRL+H + E + L V+ +V DEAD LF +G Q+ +
Sbjct: 217 LEQQFELLGSNPDIVVATPGRLLHIMEEA-SLKLSMVKCLVLDEADRLFELGLQPQIVAV 275
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
+ ++ + Q LFSAT+PS LAEF AGL +P ++RLD + K+S LK + F +R +EK
Sbjct: 276 MQKVPDACQRALFSATMPSVLAEFTSAGLHNPVVIRLDAEMKLSDKLKQSAFFVRNDEKV 335
Query: 253 AALLYMIREHI---------SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQD 303
AAL+ ++++ I + QQ LIFV +K HV++L ++ + S +G MDQ+
Sbjct: 336 AALIVLLKKVIGVAAGDTNDGTAQQALIFVESKFHVDYLQMIMEAYLISCSAVHGQMDQE 395
Query: 304 ARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRT 363
AR+ V F R+T +IVTDVAARG+D+PLLDNV+N+ FP PK+FVHRVGR ARAGR+
Sbjct: 396 ARRNAVQAFSRRETHVMIVTDVAARGLDLPLLDNVVNFSFPSTPKLFVHRVGRVARAGRS 455
Query: 364 GTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRF 423
G A+SF+T ED Y +DL F+ +P++ +E ++L D + +GR
Sbjct: 456 GAAYSFLTFEDFPYYVDLMAFIDRPLQCRRTEGDLLFTAD-------------DGCFGRM 502
Query: 424 PQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK----DLPR 479
P+ + L D +R + ++ ++ + NA + +++TK + + I+ +
Sbjct: 503 PEEDLQLELDFLRRLALEDVEVRNMAKVVDNAHKKFTRTKKKATHDGIQEARQEKYQFDN 562
Query: 480 EGLHPMFKNVLEGGELMALAFSERLKAFRPKQTILEA----------------------- 516
LHP+F LE + A LK F+ K+++LE
Sbjct: 563 TPLHPIFVERLEAKRIAADEARFDLKRFKAKESVLEMIHGEKMFQIMKPVTIQTLWKEQR 622
Query: 517 ----EGEAARSKHLQGPSSQWVD---VMKKKRAVHEKIIN-----LVHQQRSSKSMEKEV 564
E +AA K Q D + K+ V EK ++ L+ Q K +E+
Sbjct: 623 EQAEEDDAATGKGAAEEEPQKSDRAKITKRDVTVPEKKLSLGEKLLLKAQERKKRERQEM 682
Query: 565 EPEADSLMAKEIKETHGSKR-------KAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGF 617
+ + A + T G R + ++D++YF+ + + +A SV+
Sbjct: 683 DGATNEEDAVTVCPTRGMHRFESEYGGGSGKYRDQDYFMDTTKRSTMEDAHYSVKD---- 738
Query: 618 GLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKV 677
A D+ A+ + Q+Q+QVY W K+ +++++N + A + VK E+G V
Sbjct: 739 -------ATFDVGAESAQEAQQQRQVYAWSKKKNRFVRMNVND-AKAMLRGVKNEAGKAV 790
Query: 678 K-ATKTGIYKKWKERSHKKVYLKGASNEGNAEETTSVPGGRHLGGNN------------- 723
+K Y +W ++S+ ++ G + + GG N
Sbjct: 791 NFKSKLEAYSRWMKKSNMRIQDVGEEEDLGPLHRARAAQEQGTGGYNHDGDDDDDTVDIS 850
Query: 724 -----RKFRGGKNQQRSVPNAHVCSEIKDLDQVRKERQKKADRI 762
+K R G+ Q+R + H+ + +++ ++++ +K+ R+
Sbjct: 851 DPNQGKKLRVGRKQRRLPKDGHIRT-FEEMAHIKRKAEKERARL 893
>gi|358334419|dbj|GAA28065.2| ATP-dependent RNA helicase DDX54/DBP10, partial [Clonorchis
sinensis]
Length = 844
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 286/719 (39%), Positives = 414/719 (57%), Gaps = 62/719 (8%)
Query: 16 QKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTA 75
+KK KSGGF+ + LS +VF+ I ++GYK+PTPIQRK +PLILSG DVVAMARTGSGKTA
Sbjct: 34 NRKKKKSGGFQVMGLSFSVFKGITKRGYKLPTPIQRKAIPLILSGRDVVAMARTGSGKTA 93
Query: 76 AFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMES 135
AFL+P+ ++L QH+ G RALILSPTR+LA+QTL FTK++ +L + LV + +
Sbjct: 94 AFLIPLFEKLQQHMTTGP-RALILSPTRELAIQTLNFTKQVEWRINLPLFTLV--RTCKK 150
Query: 136 QFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQ 195
+ Q+ II ATPGRL+H L E+ + SLK++EYVVFDE D LF +GFAEQL + L +
Sbjct: 151 PYNNHLQSARII-ATPGRLLHILMEM-NFSLKTIEYVVFDEGDRLFELGFAEQLSETLHR 208
Query: 196 LSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPD----LKLAFFTLRQEEK 251
L +RQTL+FSATLP L EFA+AGL DP L+ ++ S +L + +EK
Sbjct: 209 LPRDRQTLIFSATLPGNLIEFARAGLNDPVLLLTFATSEWSHTSINAFQLIHLSCLPDEK 268
Query: 252 HAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSR 311
++ LL+++R I +Q ++F +TKHHVEF +L E L + + +D AR +
Sbjct: 269 NSLLLHLLRCIIPKKEQVVVFFATKHHVEFFQMLLTEAELPCTCIHSGLDPAARNSAIKE 328
Query: 312 FRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVT 371
F + + L+VTDVAARG+DIPLLDNVIN+ FPP+PK+F+HRVGR ARAGR+GTA+S +
Sbjct: 329 FTSNQIRVLLVTDVAARGVDIPLLDNVINFHFPPQPKLFLHRVGRVARAGRSGTAYSLID 388
Query: 372 SEDMAYLLDLHLFLSKPIRAA-PSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDL 430
+++ YL D+ +FL K ++ + P E+ N GR P ++
Sbjct: 389 PDELPYLFDVLVFLGKSLQTSGPVSED-----------------NVNDSLGRAPHGLVSS 431
Query: 431 VSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVL 490
+ ++I+D +A + S+++ C NA + KT+P S ES+RR K+L R LH + +
Sbjct: 432 TGNVAQQIVDRNACIASMRKPCANAMNRFVKTRPKASNESVRRAKEL-RGMLHSLPVHPC 490
Query: 491 EGGELMALAFSERLKAFRPKQ--TILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKII 548
G E A A E L R + TI EA G A P++ D+M KKR VH +I
Sbjct: 491 FGVEYEADA--EVLDVIRGLKLPTIFEALGRQA------NPAA--YDMMTKKRKVHASVI 540
Query: 549 NLVHQQRSSKSMEKEVEPEADSLMAKEIKETHGS----KRKAKTFKDEEYFISSVPTNHH 604
HQ R ++E A ++ + + + + ++ E FI N
Sbjct: 541 -AQHQARQLHLKQREANKPA--VLTRTVNLSAPTVTDFVEDGYNLENTELFIPYSRGNEA 597
Query: 605 MEAGLSVRSDQGFGLNRLEAAVLDLVADD--------SGGLQKQKQVYHWDKRGKKYIKL 656
E GLSV + + A +DL++D+ G + +KQV WD++ K+Y+
Sbjct: 598 SERGLSVSNAVNHFTAQAAEASMDLMSDELSQADKLRPAGSRLRKQV--WDRKKKRYVDS 655
Query: 657 NNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNAEETTSVP 714
E A+ K +KTESG + A+ KT Y +W +RS+ +GA + E S P
Sbjct: 656 EAAEG-KANLKRIKTESGIWIPASYKTDRYNQWIKRSNVD---QGAPDSCRNVEDISQP 710
>gi|260942725|ref|XP_002615661.1| hypothetical protein CLUG_04543 [Clavispora lusitaniae ATCC 42720]
gi|238850951|gb|EEQ40415.1| hypothetical protein CLUG_04543 [Clavispora lusitaniae ATCC 42720]
Length = 955
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 314/869 (36%), Positives = 458/869 (52%), Gaps = 153/869 (17%)
Query: 18 KKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77
KK+K+G F S LS + I +KGY+ PTPIQRKT+PLI+ DVV MARTGSGKTAAF
Sbjct: 113 KKAKAGTFASFGLSKFILSNIAKKGYRQPTPIQRKTIPLIMENRDVVGMARTGSGKTAAF 172
Query: 78 LVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF 137
++P++++L H + G R++ILSP+R+LALQT K KE + TDLR +L+GGDS+E QF
Sbjct: 173 VLPVIEKLKSHSAKVGARSVILSPSRELALQTFKQVKEFSKGTDLRSVVLIGGDSLEEQF 232
Query: 138 EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS 197
+ NPDII+ATPGR +H E++ + L +VEY+VFDEAD LF MGFAEQL+++L L
Sbjct: 233 SSMMSNPDIIVATPGRFLHLQVEMQ-LDLSTVEYIVFDEADRLFEMGFAEQLNELLAILP 291
Query: 198 ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLY 257
+RQ+LLFSATLP +L +FAKAGL +P LVRLD ++KIS L++AFF+ ++ E+ A+LL
Sbjct: 292 TSRQSLLFSATLPRSLIDFAKAGLSNPVLVRLDAESKISDLLQMAFFSTKKAEREASLLC 351
Query: 258 MI------------------REHISSDQ-------------------------------- 267
+I RE +D+
Sbjct: 352 IISDVIKMPLATQEEIAKIKRESKKADELSDDEDEKPEGDKKKRKKFKKERLPPANVLPS 411
Query: 268 --QTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV 325
T++FV TKHHVE++ L R+ G S YG +DQ ARK + RFR T L+VTDV
Sbjct: 412 PHSTIVFVPTKHHVEYVTGLLRDAGYLVSYIYGSLDQRARKEQLYRFRIGLTTLLVVTDV 471
Query: 326 AARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFL 385
AARGIDIP+L NV+N+ P KIF+HRVGR ARAG G A+S V +++ YLLDL LFL
Sbjct: 472 AARGIDIPILANVVNYTLPASSKIFIHRVGRTARAGNKGWAYSIVNEQELPYLLDLELFL 531
Query: 386 SKPIRAAPSEEEVLLDM------DGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREII 439
K I E+ M D V KI + G P+ ++ + ++
Sbjct: 532 GKKILVTSMHEKKCELMKASKGDDYVEPKISY---TDRLVLGSLPRIQLENSQEMYESLL 588
Query: 440 DSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGL----HPMFKNVLEGGEL 495
+ DL ++ +LY +T+ S ES++R K+L + GL H +F LE +
Sbjct: 589 RHNYDLKVIKDVAAKGEKLYHRTRQAASTESVKRTKELVQTGLWDEQHLIFGPNLEKEKE 648
Query: 496 MALAFSERLKAFRPKQTILEAEGEAARSKH-----------------LQGPSSQWVDVMK 538
LA L K+T+ E + R K LQ + + ++++
Sbjct: 649 KFLA---SLANRNIKETVFEY-SKKGREKEEDSLVTLMQRRRRQIAPLQRKAKERRELLE 704
Query: 539 KKR------AVHEKII-----NLVHQQRSSKSMEKEVE---PEADSLMAKEIKETHGSKR 584
K+R V ++I+ + + + ++ E+E++ +AD L AK K
Sbjct: 705 KERIAGLSHTVQDEILKGDAGEVGYSVTAVEADEEELQEAFEDADELHAKR-------KE 757
Query: 585 KAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGL-----NRLEAAVLDLVADDSGGLQK 639
K K++KD ++++S HH A DQ L N A DL DD QK
Sbjct: 758 KRKSYKDPQFYLS-----HHAPA--EAIQDQQLALHSSFVNDAAKATFDLDNDDKS--QK 808
Query: 640 QKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYL 698
QV WDK+ KYI + + E K + ESG ++ A+ ++ + +W+ KK +
Sbjct: 809 NSQVMKWDKKKGKYINMKSVE----GKKYIIGESGQRIPASFRSEKFDEWR----KKRNI 860
Query: 699 KGASNEGNAEETTSVPGGRHLGGNNRKFRGGKNQQRSVPNAHVCSEIKDLDQVRKERQKK 758
AS+ G +E S G+ NN++F K+++R P A D+ R + K+
Sbjct: 861 SSASS-GMSETADS---GK---DNNKRF---KHKKRDAPKAP--------DKFRDDYHKQ 902
Query: 759 ADRI--AFMKGKTQKGKKFSKNGKRGKPR 785
++ A G +G F+K G+R + R
Sbjct: 903 KQKVNKALESGINVRG--FNKPGQRQELR 929
>gi|353241240|emb|CCA73067.1| related to DBP10-putative ATP-dependent RNA helicase involved in
ribosome biogenesis [Piriformospora indica DSM 11827]
Length = 955
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 287/789 (36%), Positives = 425/789 (53%), Gaps = 131/789 (16%)
Query: 3 LVSSKAELKRREKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGA- 61
L+ + +K + K K + G F+S+ L P++ RA+ +GY+ PTPIQR ++P +LS
Sbjct: 65 LLKKTSTVKGKGKAKNELGGGSFQSMGLHPSLLRALTLRGYRTPTPIQRSSIPTLLSNPP 124
Query: 62 -DVVAMARTGSGKTAAFLVPMLQRLN-QHVPQGGVRALILSPTRDLALQTLKFTKELGR- 118
D+V MARTGSGKT A+++P+LQRL +H G RALIL P+R+LA+Q LK +EL R
Sbjct: 125 RDLVGMARTGSGKTLAYMIPLLQRLGGRHSGVYGARALILVPSRELAVQVLKVGRELSRG 184
Query: 119 ---------------------YTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHH 157
LR +L+VGG+ ++ QFE +A NPD+IIATPGRL+H
Sbjct: 185 WREAGDQEHAGERDESGPSTSANALRWALVVGGEGLDEQFETMANNPDVIIATPGRLLHL 244
Query: 158 LSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFA 217
L E+ ++L +++Y+VFDEAD LF +GF+ L IL +L +RQTLLFSATLP +L EFA
Sbjct: 245 LVEMS-LNLSTIQYLVFDEADRLFELGFSTHLTSILEKLPSSRQTLLFSATLPKSLVEFA 303
Query: 218 KAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS------------- 264
KAGLR+P LVRLD +TKIS DL++AF+++R+ EK AALL ++RE I
Sbjct: 304 KAGLREPKLVRLDSETKISADLRMAFWSVREGEKDAALLCLLREVIGVPLKKDLEQRGAE 363
Query: 265 ---------------------SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQD 303
+ QT++FVST+HHV +++ L G S +G + Q
Sbjct: 364 RDKSTGKRAKNSTAGAGAAILAPHQTIVFVSTQHHVAYISALLTLAGYAVSSIHGTLTQA 423
Query: 304 ARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRT 363
AR + +F KT L+ TDVAARGIDIP+L+NV+N+DFP ++FVHRVGR AR GR
Sbjct: 424 ARTSALGQFLDHKTSVLVTTDVAARGIDIPILENVVNYDFPVGNRVFVHRVGRTARMGRK 483
Query: 364 GTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRF 423
G A+SFV +++ Y+LDL LFL +P+ +D V S + A + + G F
Sbjct: 484 GWAWSFVARDEVPYVLDLQLFLGRPL------------VDKVSSLTESAFVD-SLVLGPF 530
Query: 424 PQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREG-- 481
P+ +D + +R + D++ +L +++ ++Y++TK S S R K+ G
Sbjct: 531 PRDALDQEMEYIRGLDDTNYELTTMRGVMQRGTKMYNRTKGKASPVSYSRAKEFISNGKW 590
Query: 482 -------LHPMFK--NVLEGGELMALAFS-------------ERLKAFRPKQTILEAEGE 519
+HP +K ++ E G + S E L F+P +T+ E
Sbjct: 591 GFVNSDAVHPAWKLRSIRERGTPEQKSGSTLVEPTKTRESLLESLARFKPSETVFEIGTR 650
Query: 520 AARSKHLQGPSSQWVDVMKKKRAVHEKIINLV------HQQRSSKSMEKEVEPEADSLMA 573
+ L +MK++R K + V Q +++S E E D MA
Sbjct: 651 GKTAGAL---------LMKERRRALSKAASRVPLPLVNSHQAAAESSGDEGEGVQDVEMA 701
Query: 574 KE--IKETHG-----SKRKAK---TFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLE 623
E I+ G SK KA +FKDE++++S + E G S+R F +
Sbjct: 702 DERDIESAFGPSTTMSKSKASKRTSFKDEDFYMSHYQKDADTERGYSLRDGASFA-EQAA 760
Query: 624 AAVLDLVADDSG--GLQKQKQVYHWDKRGKKYIKLNNGERVSASG-KVVKTESGAKVKAT 680
A DL D ++Q Q+ WD++ KK++K G+ A K++KTE G K+ T
Sbjct: 761 QATFDLTTDVGAQEAARRQSQL-KWDRKKKKFVK---GDGAGADNVKMIKTEGGTKLPVT 816
Query: 681 -KTGIYKKW 688
K+G Y +W
Sbjct: 817 YKSGRYDEW 825
>gi|330443505|ref|NP_010253.2| Dbp10p [Saccharomyces cerevisiae S288c]
gi|341940422|sp|Q12389.2|DBP10_YEAST RecName: Full=ATP-dependent RNA helicase DBP10; AltName: Full=DEAD
box protein 10
gi|329138871|tpg|DAA11821.2| TPA: Dbp10p [Saccharomyces cerevisiae S288c]
gi|392300086|gb|EIW11177.1| Dbp10p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 995
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 307/821 (37%), Positives = 442/821 (53%), Gaps = 123/821 (14%)
Query: 16 QKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTA 75
+K K K G F S LS V IKRKG++ PTPIQRKT+PLIL D+V MARTGSGKTA
Sbjct: 130 EKTKHKKGSFPSFGLSKIVLNNIKRKGFRQPTPIQRKTIPLILQSRDIVGMARTGSGKTA 189
Query: 76 AFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMES 135
AF++PM+++L H + G RA+ILSP+R+LA+QT K+ R T+LR LL GGDS+E
Sbjct: 190 AFILPMVEKLKSHSGKIGARAVILSPSRELAMQTFNVFKDFARGTELRSVLLTGGDSLEE 249
Query: 136 QFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQ 195
QF + NPD+IIATPGR +H E+ ++ LKSVEYVVFDEAD LF MGF EQL+++L
Sbjct: 250 QFGMMMTNPDVIIATPGRFLHLKVEM-NLDLKSVEYVVFDEADRLFEMGFQEQLNELLAS 308
Query: 196 LSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAAL 255
L RQTLLFSATLP++L +F KAGL +P LVRLD +TK+S +L++ F + + ++ A L
Sbjct: 309 LPTTRQTLLFSATLPNSLVDFVKAGLVNPVLVRLDAETKVSENLEMLFLSSKNADREANL 368
Query: 256 LYMIREHIS--------------------------------------------------- 264
LY+++E I
Sbjct: 369 LYILQEIIKIPLATSEQLQKLQNSNNEADSDSDDENDRQKKRRNFKKEKFRKQKMPAANE 428
Query: 265 --SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
S++ T++FV T+HHVE+++ L R+ G S YG +DQ ARK + FRA T L+V
Sbjct: 429 LPSEKATILFVPTRHHVEYISQLLRDCGYLISYIYGTLDQHARKRQLYNFRAGLTSILVV 488
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
TDVAARG+DIP+L NVIN+ P KIFVHRVGR ARAG G A+S V ++ YLLDL
Sbjct: 489 TDVAARGVDIPMLANVINYTLPGSSKIFVHRVGRTARAGNKGWAYSIVAENELPYLLDLE 548
Query: 383 LFLSKPIRAAPSEEEVLLDMDGVMSK--IDQAIANGE-----------TIYGRFPQTVID 429
LFL K I P + ++ VM K ID+ + + G P+ ++
Sbjct: 549 LFLGKKILLTPMYDSLV----DVMKKRWIDEGKPEYQFQPPKLSYTKRLVLGSCPRLDVE 604
Query: 430 LVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNV 489
+ D + ++ S+ DL ++T A +LY +T+ S ES++R K++ G
Sbjct: 605 GLGDLYKNLMSSNFDLQLAKKTAMKAEKLYYRTRTSASPESLKRSKEIISSGWDAQNAFF 664
Query: 490 LEGGELMALAFSERLKAFRPKQTILE----AEGEAA-----RSKHL---QGPSSQWVDVM 537
+ E L F +L+ R K+T+ E + E A R K L Q +++ +++
Sbjct: 665 GKNEEKEKLDFLAKLQNRRNKETVFEFTRNPDDEMAVFMKRRRKQLAPIQRKATERRELL 724
Query: 538 KKKR------AVHEKIINLVHQQRS---SKSMEKEVEPEADSLMAKEIKETHGSKRKAKT 588
+K+R ++ ++I+ + S+ KE E +AD L+ + E + K+K K+
Sbjct: 725 EKERMAGLSHSIEDEILKGDDGETGYTVSEDALKEFE-DADQLLEAQENE-NKKKKKPKS 782
Query: 589 FKDEEYFISSVPTNHHMEAG----LSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVY 644
FKD +F+S H+ AG ++ GF N A DL +DD + KQ
Sbjct: 783 FKDPTFFLS-----HYAPAGDIQDKQLQITNGFA-NDAAQAAYDLNSDDKVQVHKQTATV 836
Query: 645 HWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASN 703
WDK+ KKY+ N + + + K + ESG K+ A+ ++G + W + + K LK S
Sbjct: 837 KWDKKRKKYV---NTQGID-NKKYIIGESGQKIAASFRSGRFDDWSKARNLKP-LKVGSR 891
Query: 704 EGNAEETTSVPGG------RHLGGNNRKFRGG-KNQQRSVP 737
E TS+P + N R RG K++Q P
Sbjct: 892 E------TSIPSNLLEDPSQGPAANGRTVRGKFKHKQMKAP 926
>gi|344232323|gb|EGV64202.1| DEAD-domain-containing protein [Candida tenuis ATCC 10573]
Length = 910
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 290/770 (37%), Positives = 409/770 (53%), Gaps = 100/770 (12%)
Query: 18 KKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77
KK+KSG F+S S + I +KG+K PTPIQRK +PLI+ DVV MARTGSGKTAAF
Sbjct: 83 KKAKSGTFQSFGFSKFLIGNIIKKGFKQPTPIQRKAIPLIMDSRDVVGMARTGSGKTAAF 142
Query: 78 LVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF 137
+PM+++L H + G RA+ILSP+R+LALQT K KE TDLRI LLVGGDS++ QF
Sbjct: 143 TLPMVEKLKAHSAKSGSRAIILSPSRELALQTYKQVKEFSHRTDLRIMLLVGGDSLDDQF 202
Query: 138 EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS 197
+ NPDIIIATPGR MH E+ D++LKS+EY+VFDEAD LF +GFAEQL++++ L
Sbjct: 203 SAMMTNPDIIIATPGRFMHLKIEM-DLNLKSIEYIVFDEADRLFELGFAEQLNELIAGLP 261
Query: 198 ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLY 257
+RQTLLFSATLP +L EFAKAGL +P LVRLD D+KIS L++AF T ++ E+ A LLY
Sbjct: 262 ASRQTLLFSATLPKSLVEFAKAGLSNPTLVRLDADSKISDQLEMAFVTTKRNEREANLLY 321
Query: 258 MIREHIS----------------------------------------------------S 265
+++E I S
Sbjct: 322 LLQEVIKMPLPTQEEIKKMNDMNKRNDESDEEEAAAAADDNKKRKKFKKERLPPANVLPS 381
Query: 266 DQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV 325
T++FV TKHHVE++ L R G S YG +DQ ARK + +FR T ++VTDV
Sbjct: 382 KYSTMVFVPTKHHVEYITSLLRSCGYLVSYIYGTLDQTARKQQLYQFRIGLTTIMVVTDV 441
Query: 326 AARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFL 385
AARGIDIP+L NVIN+ P KIF+HRVGR ARAG G A+S V +++ YLLDL +FL
Sbjct: 442 AARGIDIPILANVINFTLPSSSKIFIHRVGRTARAGNKGWAYSIVNEKELPYLLDLEIFL 501
Query: 386 SKPIRAAPSEE---EVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSS 442
K I E ++L + G + + + G P+ ++ + ++ +
Sbjct: 502 GKKILTTSLHESKVKLLKERMGDRYQEPKLSFTERLVLGSAPRAELENCQEVYEGVLKHN 561
Query: 443 ADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGL----HPMFKNVLEGGELMAL 498
DL ++ +L+ +T+ S ES++R K++ L H +F +E +
Sbjct: 562 YDLKLIKDVSIKGEKLFYRTRQPASNESVKRSKNMVEHQLWDEQHLLFGPNVEKEK---Q 618
Query: 499 AFSERLKAFRPKQTILE------AEGEAARSKHLQGPSSQWVDVMKKKR-----AVHEKI 547
F ++L K+T+ E + E + + + Q + +K + EK+
Sbjct: 619 DFLDKLANRHSKETVFEFNKKEKEKDENSLAGFMLKRRRQLAPIQRKAKERRELVEKEKL 678
Query: 548 INLVHQQR----SSKSMEKEVEPEADSLMAKEIKETHGSKRKA-KTFKDEEYFISSVPTN 602
L H + KS + V E D ++ E G K K KTFKD ++++S
Sbjct: 679 AGLSHNIEDEILNKKSNDDGVNQE-DLDFFEDGDEVLGQKYKPKKTFKDPQFYMS----- 732
Query: 603 HHMEAGLSVRSDQGFGL-----NRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLN 657
H+ A S D+ L N A DL DD Q QVY WD + Y+
Sbjct: 733 HY--ASASDIQDKQLSLGNSFANSASNATFDLDNDDKS--QVHSQVYKWDSKKGNYV--- 785
Query: 658 NGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGN 706
S K + +ESG ++ AT K+G + +WK+++ + +N GN
Sbjct: 786 --NSRSTDKKYIISESGQRIPATFKSGRFDEWKKQNPTRSNEDPMNNLGN 833
>gi|259145212|emb|CAY78476.1| Dbp10p [Saccharomyces cerevisiae EC1118]
gi|349577043|dbj|GAA22212.1| K7_Dbp10p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 995
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 307/821 (37%), Positives = 442/821 (53%), Gaps = 123/821 (14%)
Query: 16 QKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTA 75
+K K K G F S LS V IKRKG++ PTPIQRKT+PLIL D+V MARTGSGKTA
Sbjct: 130 EKTKHKKGSFPSFGLSKIVLNNIKRKGFRQPTPIQRKTIPLILQSRDIVGMARTGSGKTA 189
Query: 76 AFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMES 135
AF++PM+++L H + G RA+ILSP+R+LA+QT K+ R T+LR LL GGDS+E
Sbjct: 190 AFILPMVEKLKSHSGKIGARAVILSPSRELAMQTFNVFKDFARGTELRSVLLTGGDSLEE 249
Query: 136 QFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQ 195
QF + NPD+IIATPGR +H E+ ++ LKSVEYVVFDEAD LF MGF EQL+++L
Sbjct: 250 QFGMMMTNPDVIIATPGRFLHLKVEM-NLDLKSVEYVVFDEADRLFEMGFQEQLNELLAS 308
Query: 196 LSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAAL 255
L RQTLLFSATLP++L +F KAGL +P LVRLD +TK+S +L++ F + + ++ A L
Sbjct: 309 LPTTRQTLLFSATLPNSLVDFVKAGLVNPVLVRLDAETKVSENLEMLFLSSKNADREANL 368
Query: 256 LYMIREHIS--------------------------------------------------- 264
LY+++E I
Sbjct: 369 LYILQEIIKIPLATSEQLQKLQNSNNEADSDSDDENDRQKKRRNFKKEKFRKQKMPAANE 428
Query: 265 --SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
S++ T++FV T+HHVE+++ L R+ G S YG +DQ ARK + FRA T L+V
Sbjct: 429 LPSEKATILFVPTRHHVEYISQLLRDCGYLISYIYGTLDQHARKRQLYNFRAGLTSILVV 488
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
TDVAARG+DIP+L NVIN+ P KIFVHRVGR ARAG G A+S V ++ YLLDL
Sbjct: 489 TDVAARGVDIPMLANVINYTLPGSSKIFVHRVGRTARAGNKGWAYSIVAENELPYLLDLE 548
Query: 383 LFLSKPIRAAPSEEEVLLDMDGVMSK--IDQAIANGE-----------TIYGRFPQTVID 429
LFL K I P + ++ VM K ID+ + + G P+ ++
Sbjct: 549 LFLGKKILLTPMYDSLV----DVMKKRWIDEGKPEYQFQPPKLSYTKRLVLGSCPRLDVE 604
Query: 430 LVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNV 489
+ D + ++ S+ DL ++T A +LY +T+ S ES++R K++ G
Sbjct: 605 GLGDLYKNLMSSNFDLQLAKKTAMKAEKLYYRTRTSASPESLKRSKEIISSGWDAQNAFF 664
Query: 490 LEGGELMALAFSERLKAFRPKQTILE----AEGEAA-----RSKHL---QGPSSQWVDVM 537
+ E L F +L+ R K+T+ E + E A R K L Q +++ +++
Sbjct: 665 GKNEEKEKLDFLAKLQNRRNKETVFEFTRNPDDEMAVFMKRRRKQLAPIQRKATERRELL 724
Query: 538 KKKR------AVHEKIINLVHQQRS---SKSMEKEVEPEADSLMAKEIKETHGSKRKAKT 588
+K+R ++ ++I+ + S+ KE E +AD L+ + E + K+K K+
Sbjct: 725 EKERMAGLSHSIEDEILKGDDGETGYTVSEDALKEFE-DADQLLEAQENE-NKKKKKPKS 782
Query: 589 FKDEEYFISSVPTNHHMEAG----LSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVY 644
FKD +F+S H+ AG ++ GF N A DL +DD + KQ
Sbjct: 783 FKDPTFFLS-----HYAPAGEIQDKQLQITNGFA-NDAAQAAYDLNSDDKVQVHKQTATV 836
Query: 645 HWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASN 703
WDK+ KKY+ N + + + K + ESG K+ A+ ++G + W + + K LK S
Sbjct: 837 KWDKKRKKYV---NTQGID-NKKYIIGESGQKIAASFRSGRFDDWSKARNLKP-LKVGSR 891
Query: 704 EGNAEETTSVPGG------RHLGGNNRKFRGG-KNQQRSVP 737
E TS+P + N R RG K++Q P
Sbjct: 892 E------TSIPSNLLEDPSQGPAANGRTVRGKFKHKQMKAP 926
>gi|255712653|ref|XP_002552609.1| KLTH0C08866p [Lachancea thermotolerans]
gi|238933988|emb|CAR22171.1| KLTH0C08866p [Lachancea thermotolerans CBS 6340]
Length = 972
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 298/833 (35%), Positives = 438/833 (52%), Gaps = 118/833 (14%)
Query: 19 KSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78
K K G F S LS + I +KG++ PTPIQRKT+PLIL D+V MARTGSGKTAAF+
Sbjct: 118 KHKKGSFASFGLSKFIVSNIAKKGFRQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAFV 177
Query: 79 VPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138
+PM+++L H + G RA+ILSP+R+LA+QT K +E R +DLR LL GG+S+E QF
Sbjct: 178 LPMIEKLKGHSAKIGARAVILSPSRELAMQTHKVFREFSRGSDLRSVLLTGGESLEEQFG 237
Query: 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198
+ NPD++IATPGR +H E+ ++ LKSVEY+VFDEAD LF MGF EQL ++L L
Sbjct: 238 LMMSNPDVVIATPGRFLHLKVEM-NLDLKSVEYLVFDEADRLFEMGFEEQLSELLAALPV 296
Query: 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258
RQTLLFSATLPS+L FAKAGL +P LVRLD +TK+S +L++ F + + EE+ A LLY+
Sbjct: 297 ARQTLLFSATLPSSLVNFAKAGLTNPVLVRLDAETKVSENLEMLFLSSKNEEREANLLYL 356
Query: 259 IRE----------------------------------------------------HISSD 266
++E + S+
Sbjct: 357 LQEAMKIPVATEEQLLEYKAKVKNSYDSDDSDEDAKAKAKKQRKSAIRKKLPSANELPSE 416
Query: 267 QQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVA 326
T++FV T+HHVE+++ L ++ G S YG +DQ AR+ + FRA T L+VTDVA
Sbjct: 417 HATIVFVPTRHHVEYISQLLKDCGYLVSYLYGTLDQHARRQQLFNFRAGLTTILVVTDVA 476
Query: 327 ARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLS 386
ARG+DIPLL NV+N+ P KIFVHRVGR ARAG G A+S V+ ++ YLLDL LFL
Sbjct: 477 ARGVDIPLLANVVNYSLPASSKIFVHRVGRTARAGNKGFAYSIVSENELPYLLDLELFLG 536
Query: 387 KPIRAAPSEEEV--LLDMDGVMSKIDQAIAN-------GETIYGRFPQTVIDLVSDRVRE 437
K I P E LL + + N + G P+ ++ D +
Sbjct: 537 KKILLTPMFEATTELLKSKWIAEGNSELTFNPPKVSYTNRMVLGACPRLDLETCGDLFKN 596
Query: 438 IIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVLEGGELMA 497
+ SS DL L+ A +LY +T+P S +S++R K++ G + E
Sbjct: 597 LTQSSFDLQQLKGVAAKAEKLYFRTRPPASSQSMKRSKEVIASGWDEQNLRFGKNIEKEK 656
Query: 498 LAFSERLKAFRPKQTILEAEGEAARSKH----------------LQGPSSQWVDVMKKKR 541
L F +L+ K+T+ E AR++ +Q + + ++++K+R
Sbjct: 657 LDFLAKLQNRNNKETVF----EFARNQDDEMSLLMKKRRIQIAPIQRRAKERKELLEKER 712
Query: 542 ------AVHEKII----NLVHQQRSSKSMEKEVEPEADSLMAKEIKETHGSKRKAKTFKD 591
V ++I+ N V + + +E + +AD L+ + K SKR K+F+D
Sbjct: 713 MAGLRHTVEDEILKGDENEVGYSVPEEVLHREFQ-DADELLGAQSK----SKR-PKSFRD 766
Query: 592 EEYFISS-VPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRG 650
+F+S P + + L V + GF N A DL DD KQ WDK+
Sbjct: 767 PAFFLSHYAPASEIQDKQLEVTN--GF-TNEAANATFDLHNDDKVQNHKQVATTKWDKKR 823
Query: 651 KKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKW---KERSHKKVYLKGASNEGN 706
+KY+ + + K + ESG K+ A+ ++G + +W ++ KV K +S
Sbjct: 824 QKYVNTQGLD----NKKYIMGESGHKIPASFRSGKFDEWSKARKLGPLKVGAKESSTTAK 879
Query: 707 AEETTSVPGGRHLGGNNRKFRGGKNQQRSVPNAHVCSEIKDLDQVRKERQKKA 759
+ G R +GG +F+ K + +P+ H +D V+K++ +KA
Sbjct: 880 MLSNPTAEGQRSIGG---RFKHNKVRAPKLPDKH-----RDDYHVQKKKVEKA 924
>gi|374107994|gb|AEY96901.1| FAEL086Wp [Ashbya gossypii FDAG1]
Length = 960
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 281/782 (35%), Positives = 417/782 (53%), Gaps = 85/782 (10%)
Query: 19 KSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78
K+K G F S LS + I RKG++ PTPIQRKT+PLIL D+V MARTGSGKTAAF+
Sbjct: 116 KAKKGSFASFGLSKFILGNISRKGFRQPTPIQRKTIPLILQQRDIVGMARTGSGKTAAFV 175
Query: 79 VPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138
+P++++L H + G RA+ILSP+R+LA+QT K KE + ++LR LL GGD +E QF
Sbjct: 176 LPLIEKLKMHSAKIGARAMILSPSRELAMQTHKVFKEFAKGSNLRSVLLTGGDGLEDQFS 235
Query: 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198
+ NPD+IIATPGR +H E+ ++ L S+EYVVFDEAD LF MGF EQL+++LG L
Sbjct: 236 MMMSNPDVIIATPGRFLHLKVEM-NLDLHSIEYVVFDEADRLFEMGFQEQLNELLGSLPT 294
Query: 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258
RQTLLFSATLPS+L +FAKAGL +P LVRLD +TK+S +L++ F +++ +E+ A LLY+
Sbjct: 295 ARQTLLFSATLPSSLVDFAKAGLTNPVLVRLDTETKVSENLEMLFLSVKNDEREANLLYL 354
Query: 259 IREHIS------------------------------------------------SDQQTL 270
++E I S T+
Sbjct: 355 LQEVIKIPVATEEQLQRFRKQSNDDADDSDDETDKKKKHSKKSKQPLPSAKDMPSPNSTI 414
Query: 271 IFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGI 330
IFVST+HHVE+++ L ++ G S YG +DQ AR+ + FR T L+VTDVAARG+
Sbjct: 415 IFVSTRHHVEYVSNLLKDCGYLVSYLYGTLDQHARRQQLHNFRCGLTNILVVTDVAARGV 474
Query: 331 DIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIR 390
DIPLL NV+N P KIFVHRVGR ARAG G A++ ++ ++ YLLDL LFL K +
Sbjct: 475 DIPLLANVVNMSLPASSKIFVHRVGRTARAGNKGWAYTILSESELPYLLDLELFLGKKVL 534
Query: 391 AAPSEEEVLLDM----------DGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIID 440
P E D+ +G + + + I G P+ ++ + D + +++
Sbjct: 535 LTPMYEAT-CDLLKKKWISEGNEGALFQPPKISYVNRLILGSAPRLDLEAMGDLFKNLVE 593
Query: 441 SSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVLEGGELMALAF 500
S+ +L +L+ A +LY +T+ S ESI+R K++ G + E L F
Sbjct: 594 SNFELQNLKAVSIKAEKLYLRTRQPASAESIKRAKEVIAAGWDEQNVRFGKNIEKEKLEF 653
Query: 501 SERLKAFRPKQTILE-AEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKS 559
+L+ K+T+ E A L + + ++++ ++++ Q +
Sbjct: 654 LAKLQNRHNKETVFEFARNHDDEMAILMKRRRRQIAPIQQRAKERQQLLEKERQAGLRHT 713
Query: 560 MEKEV----EPEADSLMAKEI-------KETHGSKRKAKTFKDEEYFISS-VPTNHHMEA 607
+E E+ E E + +E+ E + K F+DE +++S P + +
Sbjct: 714 LEDEILKGEENEVGYSVPQELLRDFEDADELAAKRNTKKGFRDENFYLSHFAPASDIQDK 773
Query: 608 GLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGK 667
L V S N + A DL DD + KQ WDK+ KKY+ + + + K
Sbjct: 774 QLQVASS---FTNEVSKATFDLHNDDKVQVHKQTATVKWDKKRKKYVNVQGID----NKK 826
Query: 668 VVKTESGAKVKAT-KTGIYKKWKERSHKKVYLK-GASNEGNAEETTSVPGGRHLGGNNRK 725
+ ESG K+ A+ ++G + +W ++ K LK GA + P G L N K
Sbjct: 827 YIIGESGQKIPASFRSGKFDEW-SKARKLAPLKVGARESSIPANLLADPTGSRLA--NGK 883
Query: 726 FR 727
F+
Sbjct: 884 FK 885
>gi|407411508|gb|EKF33546.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi
marinkellei]
Length = 825
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 258/739 (34%), Positives = 405/739 (54%), Gaps = 84/739 (11%)
Query: 15 KQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKT 74
+Q KK + GGF+S L V + R GY VPTPIQRK +P ++ G DVVAMARTGSGKT
Sbjct: 20 QQHKKKRGGGFQSFGLDKPVLDGVLRLGYNVPTPIQRKAIPSMIQGNDVVAMARTGSGKT 79
Query: 75 AAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSME 134
AAFL+PML L H G+R L+L+PTR+L+LQ L+F +L ++ DLR + LVGG+S+E
Sbjct: 80 AAFLIPMLNLLKSHSKTVGIRGLVLAPTRELSLQILRFGIQLNKFLDLRFAALVGGNSLE 139
Query: 135 SQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILG 194
QFE L NPDI++ATPGRL+H + E + L V+ +V DEAD LF +G Q+ ++
Sbjct: 140 QQFELLGSNPDIVVATPGRLLHIMEEAS-LKLSMVKCLVLDEADRLFELGLQPQIVAVMQ 198
Query: 195 QLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAA 254
++ + Q LFSAT+PS LAEF AGL +P ++RLD + K+S LK + F +R +EK AA
Sbjct: 199 KVPDACQRALFSATMPSVLAEFTSAGLHNPVVIRLDAEMKLSDKLKQSAFLVRNDEKVAA 258
Query: 255 LLYMIREHI---------SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDAR 305
L+ ++++ I + QQ LIFV +K HV++L ++ + S +G MDQ+AR
Sbjct: 259 LIVLLKKVIGVAAGDTGDGTTQQALIFVESKFHVDYLQMIMEAYHISCSAVHGHMDQEAR 318
Query: 306 KIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGT 365
+ V F R+T +IVTDVAARG+D+PLLDNV+N+ FP PK+FVHRVGR ARAGR+G
Sbjct: 319 RNAVQAFSRRETHVMIVTDVAARGLDLPLLDNVVNFSFPSTPKLFVHRVGRVARAGRSGA 378
Query: 366 AFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQ 425
A+SF+T ED Y +DL F+ +P++ +E ++L D + +GR P+
Sbjct: 379 AYSFLTFEDFPYYVDLMAFIDRPLQCRRTEGDLLFTAD-------------DGCFGRMPE 425
Query: 426 TVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK----DLPREG 481
+ L D +R + + ++ ++ + NA + +++TK + + I+ +
Sbjct: 426 EDLQLELDFLRRLALTDVEVRNMAKVVDNAHKKFTRTKKKATHDGIQEARQEKYQFDNTP 485
Query: 482 LHPMFKNVLEGGELMALAFSERLKAFRPKQTILEA------------------------- 516
LHP+F LE + A LK F+ K+++LE
Sbjct: 486 LHPIFVERLEAKRIAADEARFDLKRFKAKESVLEMIHGEKMFEIIKPVTIQTLWKEQRQQ 545
Query: 517 --EGEAARSKHLQGPSSQWVD---VMKKKRAVHEKIINL---------VHQQRSSKSMEK 562
+G+ A K Q D + K+ EK ++L ++R + M+
Sbjct: 546 AEKGDTAMGKGTAEDEPQKSDRTKITKRDVTAQEKKLSLGEKLLLKAQERKKRERQEMDG 605
Query: 563 EVEPEADSLMAKEIKETHGSKRK----AKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFG 618
E D + + H + + + ++D++YF+ + + +A SV+
Sbjct: 606 ATNVE-DGITVCPTRSMHRFESENDGGSGKYRDQDYFMDTTKRSTMEDAHYSVKD----- 659
Query: 619 LNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVK 678
A D+ A+ + Q+Q+QVY W K+ +++++N + A + VK E+G V
Sbjct: 660 ------ATFDVSAESAQEAQQQRQVYAWSKKKNRFVRMNVND-AKAMLRGVKNEAGKAVN 712
Query: 679 -ATKTGIYKKWKERSHKKV 696
+K Y +W ++S+ ++
Sbjct: 713 FKSKLEAYSRWMKKSNMRI 731
>gi|45190521|ref|NP_984775.1| AEL086Wp [Ashbya gossypii ATCC 10895]
gi|74693722|sp|Q757U8.1|DBP10_ASHGO RecName: Full=ATP-dependent RNA helicase DBP10
gi|44983463|gb|AAS52599.1| AEL086Wp [Ashbya gossypii ATCC 10895]
Length = 960
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 281/782 (35%), Positives = 417/782 (53%), Gaps = 85/782 (10%)
Query: 19 KSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78
K+K G F S LS + I RKG++ PTPIQRKT+PLIL D+V MARTGSGKTAAF+
Sbjct: 116 KAKKGSFASFGLSKFILGNISRKGFRQPTPIQRKTIPLILQQRDIVGMARTGSGKTAAFV 175
Query: 79 VPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138
+P++++L H + G RA+ILSP+R+LA+QT K KE + ++LR LL GGD +E QF
Sbjct: 176 LPLIEKLKMHSAKIGARAMILSPSRELAMQTHKVFKEFAKGSNLRSVLLTGGDGLEDQFS 235
Query: 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198
+ NPD+IIATPGR +H E+ ++ L S+EYVVFDEAD LF MGF EQL+++LG L
Sbjct: 236 MMMSNPDVIIATPGRFLHLKVEM-NLDLHSIEYVVFDEADRLFEMGFQEQLNELLGSLPT 294
Query: 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258
RQTLLFSATLPS+L +FAKAGL +P LVRLD +TK+S +L++ F +++ +E+ A LLY+
Sbjct: 295 ARQTLLFSATLPSSLVDFAKAGLTNPVLVRLDTETKVSENLEMLFLSVKNDEREANLLYL 354
Query: 259 IREHIS------------------------------------------------SDQQTL 270
++E I S T+
Sbjct: 355 LQEVIKIPVATEEQLQRFRKQSNDDADDSDDETDKKKKHSKKSKQPLPSAKDMPSPNSTI 414
Query: 271 IFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGI 330
IFVST+HHVE+++ L ++ G S YG +DQ AR+ + FR T L+VTDVAARG+
Sbjct: 415 IFVSTRHHVEYVSNLLKDCGYLVSYLYGTLDQHARRQQLHNFRCGLTNILVVTDVAARGV 474
Query: 331 DIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIR 390
DIPLL NV+N P KIFVHRVGR ARAG G A++ ++ ++ YLLDL LFL K +
Sbjct: 475 DIPLLANVVNMSLPASSKIFVHRVGRTARAGNKGWAYTILSESELPYLLDLELFLGKKVL 534
Query: 391 AAPSEEEVLLDM----------DGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIID 440
P E D+ +G + + + I G P+ ++ + D + +++
Sbjct: 535 LTPMYEAT-CDLLKKKWISEGNEGALFQPPKISYVNRLILGSAPRLDLEAMGDLFKNLVE 593
Query: 441 SSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVLEGGELMALAF 500
S+ +L +L+ A +LY +T+ S ESI+R K++ G + E L F
Sbjct: 594 SNFELQNLKAVSIKAEKLYLRTRQPASAESIKRAKEVIAAGWDEQNVRFGKNIEKEKLEF 653
Query: 501 SERLKAFRPKQTILE-AEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKS 559
+L+ K+T+ E A L + + ++++ ++++ Q +
Sbjct: 654 LAKLQNRHNKETVFEFARNHDDEMAILMKRRRRQIAPIQQRAKERQQLLEKERQAGLRHT 713
Query: 560 MEKEV----EPEADSLMAKEI-------KETHGSKRKAKTFKDEEYFISS-VPTNHHMEA 607
+E E+ E E + +E+ E + K F+DE +++S P + +
Sbjct: 714 LEDEILKGEENEVGYSVPQELLRDFEDADELAAKRNTKKGFRDENFYLSHFAPASDIQDK 773
Query: 608 GLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGK 667
L V S N + A DL DD + KQ WDK+ KKY+ + + + K
Sbjct: 774 QLQVASS---FTNEVSKATFDLHNDDKVQVHKQTATVKWDKKRKKYVNVQGID----NKK 826
Query: 668 VVKTESGAKVKAT-KTGIYKKWKERSHKKVYLK-GASNEGNAEETTSVPGGRHLGGNNRK 725
+ ESG K+ A+ ++G + +W ++ K LK GA + P G L N K
Sbjct: 827 YIIGESGQKIPASFRSGKFDEW-SKARKLAPLKVGARESSIPANLLADPTGSRLA--NGK 883
Query: 726 FR 727
F+
Sbjct: 884 FK 885
>gi|365766492|gb|EHN07988.1| Dbp10p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 899
Score = 440 bits (1132), Expect = e-120, Method: Compositional matrix adjust.
Identities = 306/821 (37%), Positives = 442/821 (53%), Gaps = 123/821 (14%)
Query: 16 QKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTA 75
+K K K G F S LS V IKRKG++ PTPIQRKT+PLIL D+V MARTGSGKTA
Sbjct: 34 EKTKHKKGSFPSFGLSKIVLNNIKRKGFRQPTPIQRKTIPLILQSRDIVGMARTGSGKTA 93
Query: 76 AFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMES 135
AF++PM+++L H + G RA+ILSP+R+LA+QT K+ R T+LR LL GGDS+E
Sbjct: 94 AFILPMVEKLKSHSGKIGARAVILSPSRELAMQTFNVFKDFARGTELRSVLLTGGDSLEE 153
Query: 136 QFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQ 195
QF + NPD+IIATPGR +H E+ ++ LKSVEYVVFDEAD LF MGF EQL+++L
Sbjct: 154 QFGMMMTNPDVIIATPGRFLHLKVEM-NLDLKSVEYVVFDEADRLFEMGFQEQLNELLAS 212
Query: 196 LSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAAL 255
L RQTLLFSATLP++L +F KAGL +P LVRLD +TK+S +L++ F + + ++ A L
Sbjct: 213 LPTTRQTLLFSATLPNSLVDFVKAGLVNPVLVRLDAETKVSENLEMLFLSSKNADREANL 272
Query: 256 LYMIREHIS--------------------------------------------------- 264
LY+++E I
Sbjct: 273 LYILQEIIKIPLATSEQLQKLQNSNNEADSDSDDENDRQKKRRNFKKEKFRKQKMPAANE 332
Query: 265 --SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
S++ T++FV T+HHVE+++ L R+ G S YG +DQ ARK + FRA T L+V
Sbjct: 333 LPSEKATILFVPTRHHVEYISQLLRDCGYLISYIYGTLDQHARKRQLYNFRAGLTSILVV 392
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
TDVAARG+DIP+L NVIN+ P KIFVHRVGR ARAG G A+S V ++ YLLDL
Sbjct: 393 TDVAARGVDIPMLANVINYTLPGSSKIFVHRVGRTARAGNKGWAYSIVAENELPYLLDLE 452
Query: 383 LFLSKPIRAAPSEEEVLLDMDGVMSK--IDQAIANGE-----------TIYGRFPQTVID 429
LFL + I P + ++ VM K ID+ + + G P+ ++
Sbjct: 453 LFLGEKILLTPMYDSLV----DVMKKRWIDEGKPEYQFQPPKLSYTKRLVLGSCPRLDVE 508
Query: 430 LVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNV 489
+ D + ++ S+ DL ++T A +LY +T+ S ES++R K++ G
Sbjct: 509 GLGDLYKNLMSSNFDLQLAKKTAMKAEKLYYRTRTSASPESLKRSKEIISSGWDAQNAFF 568
Query: 490 LEGGELMALAFSERLKAFRPKQTILE----AEGEAA-----RSKHL---QGPSSQWVDVM 537
+ E L F +L+ R K+T+ E + E A R K L Q +++ +++
Sbjct: 569 GKNEEKEKLDFLAKLQNRRNKETVFEFTRNPDDEMAVFMKRRRKQLAPIQRKATERRELL 628
Query: 538 KKKR------AVHEKIINLVHQQRS---SKSMEKEVEPEADSLMAKEIKETHGSKRKAKT 588
+K+R ++ ++I+ + S+ KE E +AD L+ + E + K+K K+
Sbjct: 629 EKERMAGLSHSIEDEILKGDDGETGYTVSEDALKEFE-DADQLLEAQENE-NKKKKKPKS 686
Query: 589 FKDEEYFISSVPTNHHMEAG----LSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVY 644
FKD +F+S H+ AG ++ GF N A DL +DD + KQ
Sbjct: 687 FKDPTFFLS-----HYAPAGEIQDKQLQITNGFA-NDAAQAAYDLNSDDKVQVHKQTATV 740
Query: 645 HWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASN 703
WDK+ KKY+ N + + + K + ESG K+ A+ ++G + W + + K LK S
Sbjct: 741 KWDKKRKKYV---NTQGID-NKKYIIGESGQKIAASFRSGRFDDWSKARNLKP-LKVGSR 795
Query: 704 EGNAEETTSVPGG------RHLGGNNRKFRGG-KNQQRSVP 737
E TS+P + N R RG K++Q P
Sbjct: 796 E------TSIPSNLLEDPSQGPAANGRTVRGKFKHKQMKAP 830
>gi|160380606|sp|A6ZXU0.1|DBP10_YEAS7 RecName: Full=ATP-dependent RNA helicase DBP10; AltName: Full=DEAD
box protein 10
gi|151941964|gb|EDN60320.1| DEAD box protein [Saccharomyces cerevisiae YJM789]
gi|190405046|gb|EDV08313.1| hypothetical protein SCRG_00534 [Saccharomyces cerevisiae RM11-1a]
gi|256269702|gb|EEU04973.1| Dbp10p [Saccharomyces cerevisiae JAY291]
Length = 995
Score = 440 bits (1132), Expect = e-120, Method: Compositional matrix adjust.
Identities = 306/821 (37%), Positives = 442/821 (53%), Gaps = 123/821 (14%)
Query: 16 QKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTA 75
+K K K G F S LS V IKRKG++ PTPIQRKT+PLIL D+V MARTGSGKTA
Sbjct: 130 EKTKHKKGSFPSFGLSKIVLNNIKRKGFRQPTPIQRKTIPLILQSRDIVGMARTGSGKTA 189
Query: 76 AFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMES 135
AF++PM+++L H + G RA+ILSP+R+LA+QT K+ R T+LR LL GGDS+E
Sbjct: 190 AFILPMVEKLKSHSGKIGARAVILSPSRELAMQTFNVFKDFARGTELRSVLLTGGDSLEE 249
Query: 136 QFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQ 195
QF + NPD+IIATPGR +H E+ ++ LKSVEYVVFDEAD LF MGF EQL+++L
Sbjct: 250 QFGMMMTNPDVIIATPGRFLHLKVEM-NLDLKSVEYVVFDEADRLFEMGFQEQLNELLAS 308
Query: 196 LSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAAL 255
L RQTLLFSATLP++L +F KAGL +P LVRLD +TK+S +L++ F + + ++ A L
Sbjct: 309 LPTTRQTLLFSATLPNSLVDFVKAGLVNPVLVRLDAETKVSENLEMLFLSSKNADREANL 368
Query: 256 LYMIREHIS--------------------------------------------------- 264
LY+++E I
Sbjct: 369 LYILQEIIKIPLATSEQLQKLQNSNNEADSDSDDENDRQKKRRNFKKEKFRKQKMPAANE 428
Query: 265 --SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
S++ T++FV T+HHVE+++ L R+ G S YG +DQ ARK + FRA T L+V
Sbjct: 429 LPSEKATILFVPTRHHVEYISQLLRDCGYLISYIYGTLDQHARKRQLYNFRAGLTSILVV 488
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
TDVAARG+DIP+L NVIN+ P KIFVHRVGR ARAG G A+S V ++ YLLDL
Sbjct: 489 TDVAARGVDIPMLANVINYTLPGSSKIFVHRVGRTARAGNKGWAYSIVAENELPYLLDLE 548
Query: 383 LFLSKPIRAAPSEEEVLLDMDGVMSK--IDQAIANGE-----------TIYGRFPQTVID 429
LFL + I P + ++ VM K ID+ + + G P+ ++
Sbjct: 549 LFLGEKILLTPMYDSLV----DVMKKRWIDEGKPEYQFQPPKLSYTKRLVLGSCPRLDVE 604
Query: 430 LVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNV 489
+ D + ++ S+ DL ++T A +LY +T+ S ES++R K++ G
Sbjct: 605 GLGDLYKNLMSSNFDLQLAKKTAMKAEKLYYRTRTSASPESLKRSKEIISSGWDAQNAFF 664
Query: 490 LEGGELMALAFSERLKAFRPKQTILE----AEGEAA-----RSKHL---QGPSSQWVDVM 537
+ E L F +L+ R K+T+ E + E A R K L Q +++ +++
Sbjct: 665 GKNEEKEKLDFLAKLQNRRNKETVFEFTRNPDDEMAVFMKRRRKQLAPIQRKATERRELL 724
Query: 538 KKKR------AVHEKIINLVHQQRS---SKSMEKEVEPEADSLMAKEIKETHGSKRKAKT 588
+K+R ++ ++I+ + S+ KE E +AD L+ + E + K+K K+
Sbjct: 725 EKERMAGLSHSIEDEILKGDDGETGYTVSEDALKEFE-DADQLLEAQENE-NKKKKKPKS 782
Query: 589 FKDEEYFISSVPTNHHMEAG----LSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVY 644
FKD +F+S H+ AG ++ GF N A DL +DD + KQ
Sbjct: 783 FKDPTFFLS-----HYAPAGEIQDKQLQITNGFA-NDAAQAAYDLNSDDKVQVHKQTATV 836
Query: 645 HWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASN 703
WDK+ KKY+ N + + + K + ESG K+ A+ ++G + W + + K LK S
Sbjct: 837 KWDKKRKKYV---NTQGID-NKKYIIGESGQKIAASFRSGRFDDWSKARNLKP-LKVGSR 891
Query: 704 EGNAEETTSVPGG------RHLGGNNRKFRGG-KNQQRSVP 737
E TS+P + N R RG K++Q P
Sbjct: 892 E------TSIPSNLLEDPSQGPAANGRTVRGKFKHKQMKAP 926
>gi|67479813|ref|XP_655288.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
gi|56472415|gb|EAL49901.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
gi|449703391|gb|EMD43850.1| DEAD box ATP-dependent RNA helicase, putative [Entamoeba
histolytica KU27]
Length = 684
Score = 440 bits (1132), Expect = e-120, Method: Compositional matrix adjust.
Identities = 252/648 (38%), Positives = 379/648 (58%), Gaps = 51/648 (7%)
Query: 14 EKQKKKSKS-GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
E+Q KKSKS GGF+S+ L+ + +KGY+VPTPIQRK +P IL G D++AMARTGSG
Sbjct: 3 EQQSKKSKSSGGFQSMGLNKQTLLGVLKKGYRVPTPIQRKAIPAILRGNDIIAMARTGSG 62
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTAA+LVP++ RL H +G VR+LI+ PTR+LALQT+K ELG+ T+L+ SL++GG
Sbjct: 63 KTAAYLVPIINRLETHSTEG-VRSLIICPTRELALQTIKVFNELGKLTNLKASLIIGGSK 121
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
+ QF+ L+ PDII+ATPGRL L E ++SL VE V FDEAD +F GF+EQ+ I
Sbjct: 122 LSDQFDNLSSGPDIIVATPGRLTFIL-EGANISLNRVEMVCFDEADLMFESGFSEQVSDI 180
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
+ L RQ LLFSATLP LAEF K L+ P ++RLD + ++SPDL F+ +++ EK
Sbjct: 181 MRMLPPTRQILLFSATLPRNLAEFLKNTLKQPEIIRLDTEERLSPDLDNFFYHVKEHEKE 240
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
LLY++ + I +QT++F +T+H VE+LN + + ++ S+ +G DQ R+I++ +F
Sbjct: 241 GHLLYLLLDLIGDKEQTVVFCATRHEVEYLNEILKIFDIKTSIMFGKADQQEREINLKKF 300
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
R ++T L+VTDVAARG+DIP LDNVIN+DFP PK+++HR GR ARAGR G ++FV +
Sbjct: 301 RKQETHVLLVTDVAARGVDIPELDNVINYDFPATPKLYIHRCGRVARAGRMGKCYNFVQT 360
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVS 432
+++ YL+DL +F A+ N E +G P++ ID
Sbjct: 361 DEVGYLMDLQVF---------------------------ALENKEIEFGVIPRSFIDPYI 393
Query: 433 DRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVLEG 492
+++E + + DL L++ N+ +Y K+KPL S E I + K + +HP FK+
Sbjct: 394 YQIQETLKGNYDLEFLKKGSDNSLIMYKKSKPLASGEGISKAKVFSIDQIHPQFKSQDNK 453
Query: 493 GELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHE-KIINLV 551
E++ + + +K +RPK T+ E + + VM R H +IIN +
Sbjct: 454 DEILKDQWLKGIKNYRPKSTVFEIDSSKLTQQQ----------VMAATRLSHSTRIINAI 503
Query: 552 HQQRSSKSMEKEVEPEADSLMAKEIKETHGSKRKAKTFKDEEYFISSVPTNHHMEAGLSV 611
+ + K E++ + E + + I K +I SVP + S
Sbjct: 504 RRNKEEKEKEEKEQLEKELKESGAIPMEEEQKSAG--------YIPSVPKKRSLFDDTSD 555
Query: 612 RSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNG 659
R N L+ V ++ AD+ L+ Q + WD++ KK++ + G
Sbjct: 556 RIIYS-TRNPLDFTV-EIAADEEEDLKAQAKQRVWDRKKKKFVMASGG 601
>gi|1279685|emb|CAA96458.1| unknown [Saccharomyces cerevisiae]
gi|1431010|emb|CAA98590.1| DBP10 [Saccharomyces cerevisiae]
Length = 995
Score = 440 bits (1132), Expect = e-120, Method: Compositional matrix adjust.
Identities = 306/821 (37%), Positives = 437/821 (53%), Gaps = 123/821 (14%)
Query: 16 QKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTA 75
+K K K G F S LS V IKRKG++ PTPIQRKT+PLIL D+V MARTGSGKTA
Sbjct: 130 EKTKHKKGSFPSFGLSKIVLNNIKRKGFRQPTPIQRKTIPLILQSRDIVGMARTGSGKTA 189
Query: 76 AFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMES 135
AF++PM+++L H + G RA+ILSP+R+LA+QT K+ R T+LR LL GGDS+E
Sbjct: 190 AFILPMVEKLKSHSGKIGARAVILSPSRELAMQTFNVFKDFARGTELRSVLLTGGDSLEE 249
Query: 136 QFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQ 195
QF + NPD+IIATPGR +H E+ ++ LKSVEYVVFDEAD LF MGF EQL+++L
Sbjct: 250 QFGMMMTNPDVIIATPGRFLHLKVEM-NLDLKSVEYVVFDEADRLFEMGFQEQLNELLAS 308
Query: 196 LSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAAL 255
L RQTLLFSATLP++L +F KAGL +P LVRLD +TK+S +L++ F + + ++ A L
Sbjct: 309 LPTTRQTLLFSATLPNSLVDFVKAGLVNPVLVRLDAETKVSENLEMLFLSSKNADREANL 368
Query: 256 LYMIREHIS--------------------------------------------------- 264
LY+++E I
Sbjct: 369 LYILQEIIKIPLATSEQLQKLQNSNNEADSDSDDENDRQKKRRNFKKEKFRKQKMPAANE 428
Query: 265 --SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
S++ T++FV T+HHVE+++ L R+ G S YG +DQ ARK + FRA T L+V
Sbjct: 429 LPSEKATILFVPTRHHVEYISQLLRDCGYLISYIYGTLDQHARKRQLYNFRAGLTSILVV 488
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
TDVAARG+DIP+L NVIN+ P KIFVHRVGR ARAG G A+S V ++ YLLDL
Sbjct: 489 TDVAARGVDIPMLANVINYTLPGSSKIFVHRVGRTARAGNKGWAYSIVAENELPYLLDLE 548
Query: 383 LFLSKPIRAAPSEEEVLLDMDGVMSK--IDQAIANGE-----------TIYGRFPQTVID 429
LFL K I P + ++ VM K ID+ + + G P+ ++
Sbjct: 549 LFLGKKILLTPMYDSLV----DVMKKRWIDEGKPEYQFQPPKLSYTKRLVLGSCPRLDVE 604
Query: 430 LVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNV 489
+ D + ++ S+ DL ++T A +LY +T+ S ES++R K++ G
Sbjct: 605 GLGDLYKNLMSSNFDLQLAKKTAMKAEKLYYRTRTSASPESLKRSKEIISSGWDAQNAFF 664
Query: 490 LEGGELMALAFSERLKAFRPKQTILE----AEGEAA-----RSKHL---QGPSSQWVDVM 537
+ E L F +L+ R K+T+ E + E A R K L Q +++ +++
Sbjct: 665 GKNEEKEKLDFLAKLQNRRNKETVFEFTRNPDDEMAVFMKRRRKQLAPIQRKATERRELL 724
Query: 538 KKKRAVHEKIINLVHQQRS---------SKSMEKEVEPEADSLMAKEIKETHGSKRKAKT 588
+K+R I++ + + S+ KE E L A+E + K+K K+
Sbjct: 725 EKERMAGLHILSKMKFWKGDDVETGYTVSEDALKEFEDAHQLLEAQE--NENKKKKKPKS 782
Query: 589 FKDEEYFISSVPTNHHMEAG----LSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVY 644
FKD +F+S H+ AG ++ GF N A DL +DD + KQ
Sbjct: 783 FKDPTFFLS-----HYAPAGDIQDKQLQITNGFA-NDAAQAAYDLNSDDKVQVHKQTATV 836
Query: 645 HWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASN 703
WDK+ KKY+ N + + + K + ESG K+ A+ ++G + W + + K LK S
Sbjct: 837 KWDKKRKKYV---NTQGID-NKKYIIGESGQKIAASFRSGRFDDWSKARNLKP-LKVGSR 891
Query: 704 EGNAEETTSVPGG------RHLGGNNRKFRGG-KNQQRSVP 737
E TS+P + N R RG K++Q P
Sbjct: 892 E------TSIPSNLLEDPSQGPAANGRTVRGKFKHKQMKAP 926
>gi|357630995|gb|EHJ78746.1| hypothetical protein KGM_20929 [Danaus plexippus]
Length = 706
Score = 440 bits (1131), Expect = e-120, Method: Compositional matrix adjust.
Identities = 263/671 (39%), Positives = 406/671 (60%), Gaps = 58/671 (8%)
Query: 34 VFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRL----NQHV 89
+ + I ++GYK PTPIQRKT+P+ L DVVAMARTGSGKTA F++P+L++L N+ +
Sbjct: 7 ILKGITKRGYKQPTPIQRKTIPIALDNKDVVAMARTGSGKTACFVLPILEKLMSPGNKPL 66
Query: 90 PQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA-QNPDIII 148
+RALILSPTR+LALQTL+F +ELG++T L + ++GG+S+E QF ++ +PDI++
Sbjct: 67 HGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFGVMSGSSPDIVV 126
Query: 149 ATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208
ATPGR +H E+ + L +++ VVFDEAD LF +GF EQL +I+ +L +RQTLLFSAT
Sbjct: 127 ATPGRFLHICIEMS-LKLDNIKIVVFDEADRLFELGFGEQLQEIVARLPSSRQTLLFSAT 185
Query: 209 LPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI-REHISSDQ 267
LP L EFA+AGL DP L+RLDVD K+ L L + +R E K AALL ++ R +
Sbjct: 186 LPKMLVEFARAGLSDPVLIRLDVDWKLPSTLWLGWIYVRSELKTAALLLLLDRVLTPTTP 245
Query: 268 QTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAA 327
Q ++F +TKHHVE+L+++ + G+ + Y +D ARKI + +F +K L+VTDVAA
Sbjct: 246 QAVVFAATKHHVEYLHLILNKAGISSTYAYSGLDPSARKIALGKFTNKKCSVLLVTDVAA 305
Query: 328 RGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSK 387
RG+D+P LD VIN++FP KPK+FVHRVGR+ARAGR+G A S V +ED+A+LLDLHLFL+
Sbjct: 306 RGLDLPSLDTVINYNFPAKPKLFVHRVGRSARAGRSGRALSLVCAEDVAHLLDLHLFLNA 365
Query: 388 PIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNS 447
+ PS+ +++ + +G ++G P +++ V + +++
Sbjct: 366 TL-IEPSQ----------VNECGTSCPSG--VWGVVPPAALEMRHQDVLAWERNYSEIEE 412
Query: 448 LQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGL-HPMFKNVLEGGELMALAFSERLKA 506
R C ++ Y K + S E+ +R K PR L HP +++ + +A E++K
Sbjct: 413 ASRICGRGWQQYLKWREAASAEANKRSKVTPRPTLPHPF---LVDENDQTTIALVEQIKN 469
Query: 507 FRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKSMEKEVEP 566
+ PK TILE G+ +L MK KR VH K +V + R +K+
Sbjct: 470 YTPKGTILELAGKNDSPMYL---------AMKAKRRVHGK---MVQKTRENKN------- 510
Query: 567 EADSLMAKEIKETHG---SKRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLE 623
AD + +++ K+ K + +E +I ++ H EAG++V G
Sbjct: 511 NADDGLLQDVTNQEAKDKGKKNKKAVQRDENYIPHFASDQHTEAGMAVNFAAG-----AS 565
Query: 624 AAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLN-NGERVSASGKVVKTESGAKVKAT-K 681
+A L++ D +++ + WD++ KK + ++ +G R K+++TESG +V A+ K
Sbjct: 566 SAELEMRGDCDATVRQHRAQLKWDRKRKKMVHVDPDGGR-----KMIRTESGGRVPASYK 620
Query: 682 TGIYKKWKERS 692
+G Y W++R+
Sbjct: 621 SGRYDAWRKRN 631
>gi|167382487|ref|XP_001736127.1| DEAD box ATP-dependent RNA helicase [Entamoeba dispar SAW760]
gi|165901566|gb|EDR27644.1| DEAD box ATP-dependent RNA helicase, putative [Entamoeba dispar
SAW760]
Length = 684
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 252/648 (38%), Positives = 379/648 (58%), Gaps = 51/648 (7%)
Query: 14 EKQKKKSKS-GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
E+Q KKSKS GGF+S+ L+ + +KGY+VPTPIQRK +P IL G D++AMARTGSG
Sbjct: 3 EQQSKKSKSSGGFQSMGLNKQTLLGVLKKGYRVPTPIQRKAIPAILRGNDIIAMARTGSG 62
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTAA+LVP++ RL H +G VR+LI+ PTR+LALQT+K ELG+ T+L+ SL++GG
Sbjct: 63 KTAAYLVPIINRLETHSTEG-VRSLIICPTRELALQTIKVFNELGKLTNLKASLIIGGSK 121
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
+ QF+ L+ PDII+ATPGRL L E ++SL VE V FDEAD +F GF+EQ+ I
Sbjct: 122 LSDQFDNLSSGPDIIVATPGRLTFIL-EGANISLNRVEMVCFDEADLMFESGFSEQVSDI 180
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
+ L RQ LLFSATLP LAEF K L+ P ++RLD + ++SPDL F+ +++ EK
Sbjct: 181 MRMLPPTRQILLFSATLPRNLAEFLKNTLKQPEIIRLDTEERLSPDLDNFFYHVKEHEKE 240
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
LLY++ + I +QT++F +T+H VE+LN + + ++ S+ +G DQ R+I++ +F
Sbjct: 241 GHLLYLLLDLIGDKEQTVVFCATRHEVEYLNEVLKIFDIKTSMMFGKADQQEREINLKKF 300
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
R ++T L+VTDVAARG+DIP LDNVIN+DFP PK+++HR GR ARAGR G ++FV +
Sbjct: 301 RKQETHVLLVTDVAARGVDIPELDNVINYDFPATPKLYIHRCGRVARAGRMGKCYNFVQT 360
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVS 432
+++ YL+DL +F A+ N E +G P++ ID
Sbjct: 361 DEVGYLMDLQVF---------------------------ALENKEIEFGVIPRSFIDPYI 393
Query: 433 DRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVLEG 492
+++E + + DL L++ N+ +Y K+KPL S E I + K + +HP FK+
Sbjct: 394 YQIQETLKGNYDLEFLKKGSDNSLIMYKKSKPLASGEGISKAKVFSIDQIHPQFKSQDNK 453
Query: 493 GELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHE-KIINLV 551
E++ + + +K +RPK T+ E + + VM R H +IIN +
Sbjct: 454 DEILKDQWLKGIKDYRPKSTVFEIDSSKLTQQQ----------VMAATRLSHSTRIINAI 503
Query: 552 HQQRSSKSMEKEVEPEADSLMAKEIKETHGSKRKAKTFKDEEYFISSVPTNHHMEAGLSV 611
+ + K E++ + E + + I K +I SVP + S
Sbjct: 504 RRNKEEKEKEEKEQLEKELKESGTIPMEEEQKSAG--------YIPSVPKKRSLFDDTSD 555
Query: 612 RSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNG 659
R N L+ V ++ AD+ L+ Q + WD++ KK++ + G
Sbjct: 556 RIIYS-TRNPLDFTV-EIAADEEADLKAQAKQRVWDRKKKKFVMASGG 601
>gi|407043198|gb|EKE41803.1| DEAD/DEAH box helicase, putative [Entamoeba nuttalli P19]
Length = 684
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 252/648 (38%), Positives = 379/648 (58%), Gaps = 51/648 (7%)
Query: 14 EKQKKKSKS-GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
E+Q KKSKS GGF+S+ L+ + +KGY+VPTPIQRK +P IL G D++AMARTGSG
Sbjct: 3 EQQSKKSKSSGGFQSMGLNKQTLLGVLKKGYRVPTPIQRKAIPAILRGNDIIAMARTGSG 62
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTAA+LVP++ RL H +G VR+LI+ PTR+LALQT+K ELG+ T+L+ SL++GG
Sbjct: 63 KTAAYLVPIINRLETHSTEG-VRSLIICPTRELALQTIKVFNELGKLTNLKASLIIGGSK 121
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
+ QF+ L+ PDII+ATPGRL L E ++SL VE V FDEAD +F GF+EQ+ I
Sbjct: 122 LSDQFDNLSSGPDIIVATPGRLTFIL-EGANISLNRVEMVCFDEADLMFESGFSEQVSDI 180
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
+ L RQ LLFSATLP LAEF K L+ P ++RLD + ++SPDL F+ +++ EK
Sbjct: 181 MRMLPPTRQILLFSATLPRNLAEFLKNTLKQPEIIRLDTEERLSPDLDNFFYHVKEHEKE 240
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
LLY++ + I +QT++F +T+H VE+LN + + ++ S+ +G DQ R+I++ +F
Sbjct: 241 GHLLYLLLDLIGDKEQTVVFCATRHEVEYLNEILKIFEIKTSIMFGKADQQEREINLKKF 300
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
R ++T L+VTDVAARG+DIP LDNVIN+DFP PK+++HR GR ARAGR G ++FV +
Sbjct: 301 RKQETHVLLVTDVAARGVDIPELDNVINYDFPATPKLYIHRCGRVARAGRMGKCYNFVQT 360
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVS 432
+++ YL+DL +F A+ N E +G P++ ID
Sbjct: 361 DEVGYLMDLQVF---------------------------ALENKEIEFGVIPRSFIDPYI 393
Query: 433 DRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVLEG 492
+++E + + DL L++ N+ +Y K+KPL S E I + K + +HP FK+
Sbjct: 394 YQIQETLKGNYDLEFLKKGSDNSLIMYKKSKPLASGEGISKAKVFSIDQIHPQFKSQDNK 453
Query: 493 GELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHE-KIINLV 551
E++ + + +K +RPK T+ E + + VM R H +IIN +
Sbjct: 454 DEILKDQWLKGIKNYRPKSTVFEIDSSKLTQQQ----------VMAATRLSHSTRIINAI 503
Query: 552 HQQRSSKSMEKEVEPEADSLMAKEIKETHGSKRKAKTFKDEEYFISSVPTNHHMEAGLSV 611
+ + K E++ + E + + I K +I SVP + S
Sbjct: 504 RRNKEEKEKEEKEQLEKELKESGAIPMEEEQKPAG--------YIPSVPKKRSLFDDTSD 555
Query: 612 RSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNG 659
R N L+ V ++ AD+ L+ Q + WD++ KK++ + G
Sbjct: 556 RIIYS-TRNPLDFTV-EIAADEEEDLKAQAKQRVWDRKKKKFVMASGG 601
>gi|448522708|ref|XP_003868758.1| Dbp10 protein [Candida orthopsilosis Co 90-125]
gi|380353098|emb|CCG25854.1| Dbp10 protein [Candida orthopsilosis]
Length = 912
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 296/846 (34%), Positives = 445/846 (52%), Gaps = 141/846 (16%)
Query: 18 KKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77
KK+K+G F S S + I +KGYK PTPIQRK++PLI++ DVV MARTGSGKTAAF
Sbjct: 89 KKAKAGSFASFGFSKFLLSNISKKGYKQPTPIQRKSIPLIINNRDVVGMARTGSGKTAAF 148
Query: 78 LVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF 137
++P++++L P GVRA+ILSP+R+LALQT K KE R TDL+ +L+GGDS+E F
Sbjct: 149 VLPLIEKLKSRRP-TGVRAVILSPSRELALQTYKQVKEFSRGTDLQSIVLIGGDSLEEDF 207
Query: 138 EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS 197
++ PD+I+ TPGR +H E++ L +V+Y+VFDEAD LF MGFAEQL+++L L
Sbjct: 208 GKMVSKPDVIVCTPGRFLHLKVEMQ-YDLSTVQYIVFDEADRLFEMGFAEQLNELLLALP 266
Query: 198 ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLY 257
NRQ+LLFSATLP L +FAKAGL +P LVRLD ++KIS +L++A+FT + E+ A LLY
Sbjct: 267 PNRQSLLFSATLPRTLVDFAKAGLTNPVLVRLDAESKISENLQMAYFTTKINEREANLLY 326
Query: 258 MIRE-------------------------------------------------HISSDQQ 268
+++E + S++
Sbjct: 327 ILQEVIKMPLGTPEEVKKLVAMDKREAEESDDDGDSGKKRKYKFKKERMPSANQLPSERS 386
Query: 269 TLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAAR 328
T+IFV TKHHVE++ L R+ G S YG +DQ ARK + +F+ T L+VTDVAAR
Sbjct: 387 TIIFVPTKHHVEYITKLLRDAGYLVSYIYGTLDQHARKNQLYQFKIGLTKILVVTDVAAR 446
Query: 329 GIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKP 388
GIDIP+L NVIN+ P KIF+HRVGR ARAG G A+S V +++ YLLDL LFL K
Sbjct: 447 GIDIPVLANVINFTLPGSSKIFIHRVGRTARAGNKGWAYSIVNEKELPYLLDLELFLGKK 506
Query: 389 IRAAPSEE---EVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADL 445
+ E E+L + G + + G P+ ++ + ++ ++ ++
Sbjct: 507 VLLTSMYEAKCEMLKNKQGDSYIPPRVNYTERLVVGSIPRVDLETFQELYENLLKNNYEI 566
Query: 446 NSLQRTCTNAFRLYSKTKPLPSKESIRRGKDL----PREGLHPMFKNVLEGGELMALAFS 501
L+ T +LY +T+ S+ES++R K++ + H +F LE + LA
Sbjct: 567 KVLKDVATKGEKLYHRTRQAASQESLKRSKEILETNSWDDQHLLFGENLEKKKEDFLA-- 624
Query: 502 ERLKAFRPKQTILEAEGEAARSKH---------------LQGPSSQWVDVMKKKR----- 541
+L+ K+T+ E + + +Q + + ++++K+R
Sbjct: 625 -KLQNRNVKETVFEIRKKGVKENDSLAEFMHKRRRQIAPIQRKAQERRELLQKERLAGLR 683
Query: 542 -AVHEKIINL------VHQQRSSKSMEKEVEPEADSLMAKEIKETHGSKRKAKTFKDEEY 594
+ E+++ QQ ++K E + D L +K KT +D +Y
Sbjct: 684 HGIEEELLKTDDENSGYVQQVDDDELQKAFE-DGDQL------------QKKKTSRDPQY 730
Query: 595 FISSVPTNHHMEAGLSVRSDQGFGL-----NRLEAAVLDLVADDSGGLQKQKQVYHWDKR 649
FIS H+ A SV DQ + N +AA DL DD LQ KQV WDK+
Sbjct: 731 FIS-----HYAPA--SVIQDQQLSIASSFVNDAQAAAFDLDNDDK--LQANKQVMKWDKK 781
Query: 650 GKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNAE 708
KYI N + S K + +E+G K+ A+ ++G + +WK++ N +
Sbjct: 782 KGKYI---NSQ--STDKKYIISENGTKIPASFRSGKFDEWKKQR-------------NLK 823
Query: 709 ETTSVPGGRHLGGNNRKFRGGKNQQRSVPNAHVCSEIKDLDQVRKERQKKADRIAFMKGK 768
T SV + NN +F+ K +P+ + D + +K+ +K D +KG
Sbjct: 824 HTASVDDVKE---NNHRFKHKKQSTPKLPDKYR----DDYHKQKKKVEKALDSGLRVKGY 876
Query: 769 TQKGKK 774
+ G++
Sbjct: 877 NKPGQQ 882
>gi|58263322|ref|XP_569071.1| DEAD box RNA helicase [Cryptococcus neoformans var. neoformans
JEC21]
gi|134108656|ref|XP_776981.1| hypothetical protein CNBB5090 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338818048|sp|P0CR07.1|DBP10_CRYNB RecName: Full=ATP-dependent RNA helicase DBP10
gi|338818049|sp|P0CR06.1|DBP10_CRYNJ RecName: Full=ATP-dependent RNA helicase DBP10
gi|50259664|gb|EAL22334.1| hypothetical protein CNBB5090 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57223721|gb|AAW41764.1| DEAD box RNA helicase, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 802
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 276/723 (38%), Positives = 405/723 (56%), Gaps = 94/723 (13%)
Query: 15 KQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGA--DVVAMARTGSG 72
K+K G + +LN+ P++ R++ + +K PTPIQR +P LS D++ MARTGSG
Sbjct: 19 KEKTSGPGGQWRALNVGPDLIRSLLIRKFKTPTPIQRAAIPPALSTPPRDILGMARTGSG 78
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGR-------------- 118
KT A+L+P+LQR G RALIL P+R+LA+Q K+L R
Sbjct: 79 KTLAYLIPLLQRTGSTHHGQGPRALILCPSRELAVQIYTVGKDLARGMNKGKGKGKNKNE 138
Query: 119 ---------YTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSV 169
LR +L++GG+ M++QFE+++ NPDI+IATPGR +H + E+ M L+ +
Sbjct: 139 DEEDEEGKGKEGLRWALIIGGEGMDAQFEKMSSNPDIVIATPGRFLHLIVEMH-MDLRHL 197
Query: 170 EYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRL 229
+ V++DEAD LF MGF QL +IL +L RQ LLFSATLPS++AEFAKAGL +P LVRL
Sbjct: 198 QTVIYDEADRLFEMGFDVQLQEILHRLPSTRQNLLFSATLPSSVAEFAKAGLVNPLLVRL 257
Query: 230 DVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI-----------SSDQQTLIFVSTKHH 278
D + KISPDL L FF+++ EK A+LL ++RE I SS Q ++FV+TKHH
Sbjct: 258 DAEQKISPDLALKFFSVKPGEKEASLLVLLREVIGKPNQPEPADPSSAPQAIVFVATKHH 317
Query: 279 VEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNV 338
V+++ L R G S+ Y +DQ AR+ ++ FR+ ++ L+VTDVAARG+DIP++D+V
Sbjct: 318 VDYVAELLRTTGYRTSLIYSSLDQVARQQQLAGFRSHQSDVLVVTDVAARGLDIPIMDHV 377
Query: 339 INWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEV 398
IN+DFP P+IFVHRVGR ARAGR GTA+S + ED YL DLH FL P+ +V
Sbjct: 378 INYDFPAGPRIFVHRVGRTARAGRKGTAYSLIVKEDFPYLCDLHTFLGTERMGEPA--DV 435
Query: 399 LLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRL 458
L + I+Q N E ++ +T + + +R ++ + RT N
Sbjct: 436 LRSL-----PIEQLSENVEYVFHNLDETAPHITA--LRNVMRKGQGMFERSRTKANPTS- 487
Query: 459 YSKTKPLPSKESIRRGKDLPREGLHPMFKNVL------EGGELMALAFSERLKAFRPKQT 512
Y + K L S S + PR + MF++ + E L+A ++ AF P +T
Sbjct: 488 YRQAKSLASALS----NNPPR--IDDMFEDAMEVEVNEEKARLLA-----KVAAFTPSET 536
Query: 513 ILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKSMEKEVEPEADSLM 572
+ E + S +MKK+R ++ Q+R SK+ E E S M
Sbjct: 537 VFEVGKRESES----------AIIMKKRRKTVDE-----RQKRVSKA---EAEKSTASGM 578
Query: 573 AK-EIKETHGSKRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVA 631
K +KE + +K FKD +++ E G S++S G+ L A+ D+ A
Sbjct: 579 EKAPVKELPAPQLPSKNFKDPSFYLDHTQRGAEAEKGYSLKS----GVESLSGAITDMTA 634
Query: 632 DDSGGLQKQKQV-YHWDKRGKKYIKLNNGERVSASG-KVVKTESGAKVKAT-KTGIYKKW 688
D+ G + QK WD++ K+IK N SA G K++K+ESGA + A+ +G Y++W
Sbjct: 635 DEGTGPKAQKASQLSWDRKKHKFIKKNG----SADGEKMIKSESGALLPASYSSGKYQEW 690
Query: 689 KER 691
K +
Sbjct: 691 KSK 693
>gi|440472202|gb|ELQ41079.1| ATP-dependent RNA helicase DBP10 [Magnaporthe oryzae Y34]
gi|440478179|gb|ELQ59033.1| ATP-dependent RNA helicase DBP10 [Magnaporthe oryzae P131]
Length = 880
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 271/705 (38%), Positives = 400/705 (56%), Gaps = 63/705 (8%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+++ L+P++ +AI RKG+ VPTPIQRK++PLIL DVV MARTGSGKTAAF++PM++R
Sbjct: 92 FQAMGLNPSLLQAITRKGFAVPTPIQRKSIPLILDRRDVVGMARTGSGKTAAFVIPMIER 151
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L H + G RALI+SP+R+LALQTLK KE G+ TDL+ LLVGGDS+E QF + NP
Sbjct: 152 LRAHSARVGARALIMSPSRELALQTLKVVKEFGKGTDLKTVLLVGGDSLEDQFGFMTTNP 211
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
DIIIATPGR +H E+ + L S++YVVFDEAD LF MGFA QL +IL L +RQTLL
Sbjct: 212 DIIIATPGRFLHLKVEMS-LDLSSIKYVVFDEADRLFEMGFATQLTEILHSLPPSRQTLL 270
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSATLP +L EFA+AGL+DP L + + T K ++ K +E
Sbjct: 271 FSATLPRSLVEFARAGLQDPSLDVIKMPTGTPEGFKEDKDEGSKKRKRGPDRPNAKEK-P 329
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
++ T+IF +TK HVE+L + + G S YG +DQ ARKI V FR KT L+VTD
Sbjct: 330 TEHSTIIFTATKFHVEYLTSILVQAGYAVSHAYGALDQTARKIQVEDFRRGKTNILVVTD 389
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
VAARGIDIP+L NVIN+DF +PK+FVHRVGR ARAG+ G ++S V+ D YLLDL LF
Sbjct: 390 VAARGIDIPVLANVINYDFCDQPKVFVHRVGRTARAGQKGWSYSLVSDIDAPYLLDLQLF 449
Query: 385 LSKPIRAAPSEEEVLLDMDGVMSKIDQAIAN--GETIYGRFPQTVIDLVSDRVREIIDSS 442
L + + V+ + A AN + + G + I+ + V +++ S
Sbjct: 450 LGRRL---------------VVGQDTSAGANFASDVVLGALQRNSIETNVEWVEKVVQES 494
Query: 443 ADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGL----HPMFKNVLEGGELMAL 498
D+ ++ A + Y +T+ S +S +R ++L H +F + E + +
Sbjct: 495 HDIALMRSVVVKAQKQYLRTRVSASSQSAKRARELTASRAWSQPHLIFGINTDDTEALRV 554
Query: 499 AFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMK--KKRAVHEK---------- 546
++ F+P++T+ E G + G S+ V+VMK +KRA K
Sbjct: 555 EMLAKISGFKPQETVFEI-GHGGK-----GTISEAVEVMKQLRKRAPVRKSKTDKDADDE 608
Query: 547 --IINLVHQQRSSKSMEKE----------VEPEADSLMAKEIKETHGSKRKAKTFKDEEY 594
+ ++ + +S +S +++ V ++D + + S + A ++D E+
Sbjct: 609 DEDVPVIKRAKSDESSDEDASFDEDDFVAVNDDSDEELEVTVSNNADSAKNASAWRDSEH 668
Query: 595 FISSVP--TNHHMEAGLSVRSDQGFGLNRLEAA---VLDLVADDSGGL--QKQKQVYHWD 647
F++ P +N E G V + G N LEAA +D+ D+ + WD
Sbjct: 669 FMTYTPRQSNVAEERGYGVNAGSN-GANFLEAARDVAMDIANDEKSTSFGAPTRTTMRWD 727
Query: 648 KRGKKYIKLNNGERVS-ASGKVVKTESGAKVKAT-KTGIYKKWKE 690
K+ KY+ + E S + K+++ ESG K+ A+ K+G + +W++
Sbjct: 728 KKNAKYVSRAHDEDGSRGNTKMIRGESGVKIAASFKSGRFDRWRK 772
>gi|254566739|ref|XP_002490480.1| Putative ATP-dependent RNA helicase of the DEAD-box protein family
[Komagataella pastoris GS115]
gi|238030276|emb|CAY68199.1| Putative ATP-dependent RNA helicase of the DEAD-box protein family
[Komagataella pastoris GS115]
gi|328350871|emb|CCA37271.1| ATP-dependent RNA helicase [Komagataella pastoris CBS 7435]
Length = 1003
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 288/798 (36%), Positives = 414/798 (51%), Gaps = 101/798 (12%)
Query: 18 KKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77
KK+K+G F S LS + I RKGY+ PTPIQRKTMPLI+S DVV MARTGSGKTAAF
Sbjct: 110 KKAKAGSFASFGLSKFLLGNIARKGYRQPTPIQRKTMPLIMSNRDVVGMARTGSGKTAAF 169
Query: 78 LVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF 137
L+P++++L H + G+RA+ILSP+R+LA+QT + KE R T+LR LL+GGDSME QF
Sbjct: 170 LLPLVEKLKVHSAKVGIRAIILSPSRELAVQTFRQFKEFSRGTNLRAMLLIGGDSMEDQF 229
Query: 138 EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS 197
+ NPD++IATPGR +H E+ + LKS+EYVV+DEAD LF MGFAEQL+++L L
Sbjct: 230 GAMMSNPDVVIATPGRFLHLKVEMS-LDLKSIEYVVYDEADRLFEMGFAEQLNELLAALP 288
Query: 198 ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLY 257
RQ+LLFSATLPS+L FAKAGL +P LVRLD ++ IS L++AF + + E+ LLY
Sbjct: 289 HRRQSLLFSATLPSSLINFAKAGLINPVLVRLDAESTISDQLEMAFISSKDNEREGNLLY 348
Query: 258 MIREHI-----SSDQ--------------------------------------------- 267
+++E I SSDQ
Sbjct: 349 LLQEVIKMPLASSDQLKQIAEGDEDDEDEETQENDYNNRNKSGNGSRKAPRFNRSLRLPR 408
Query: 268 --------QTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319
T++FV TKHHVEF+ L ++ G + YG +DQ AR+ + FRA
Sbjct: 409 ATDLPTPHSTIVFVPTKHHVEFITTLLKKIGYAVAYTYGSLDQHARRQQLLNFRAGIATV 468
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLL 379
L+VTDVAARGIDIP+L NVIN+ P KIFVHRVGR ARAG G A+S V ++ YLL
Sbjct: 469 LVVTDVAARGIDIPVLANVINFSLPASSKIFVHRVGRTARAGHRGWAYSIVQDRELPYLL 528
Query: 380 DLHLFLSKPI--------RAAPSEEEVLLDMDGVMSKIDQAIAN--GETIYGRFPQTVID 429
DL LFL + + + +E + +G + + + + G P+ ++
Sbjct: 529 DLELFLGRKVLLTEMQNGKVHLLQERYKKEHNGSLEGFEPPAVSFTQRLVLGSCPRNPLE 588
Query: 430 LVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNV 489
+ I+ S DL T A +LY +T+ S +S+RR K+L G +N+
Sbjct: 589 GYLEMFNTIMKDSYDLQLQSGVATKAEKLYFRTRGAASSDSVRRTKELKASGKWDE-QNI 647
Query: 490 LEGG--ELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKI 547
L G E F +L+ + ++T+ E + + V ++K+ A +
Sbjct: 648 LFGANEEYEKELFLAKLRDRKDRETVFEFGHNDDHLALMMAKRRRQVAPVQKRAAERRAL 707
Query: 548 INLVHQQRSSKSMEKE-VEPEADSLMAKEIKETHGSKR--------KAKTFKDEEYFIS- 597
+ + + S+ + ++ +A+ + + E S K+FKDE F+S
Sbjct: 708 LQQEKEAGLANSLHDDLIKGDANEIGYSTVNEQELSSAFEDGDRLLGKKSFKDESVFMSH 767
Query: 598 ----SVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKY 653
S + ME S F + A DL DD G+Q +Q WDK+ KY
Sbjct: 768 YAPVSSLQDKQMEEDGEANSGSYFA-QEAQRAAFDLADDD--GVQVHRQTMQWDKKKGKY 824
Query: 654 IKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNAEETTS 712
+ + ++ K + ESGA++ A+ K G ++ W SH G+ + A+E
Sbjct: 825 VNAKSTDK-----KFIVGESGARIPASYKAGKFEAW---SHAN---GGSKHRVGAKEEAG 873
Query: 713 VPGGRHLGGNNRKFRGGK 730
V G + + GK
Sbjct: 874 VNSNSFAGNASSRLANGK 891
>gi|392570219|gb|EIW63392.1| DEAD-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 956
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 278/746 (37%), Positives = 410/746 (54%), Gaps = 94/746 (12%)
Query: 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGA--DVVAMARTGSGKTAAFLVP 80
G F+S+ L P + R++ +G+++PTPIQR +P +LS D+V MARTGSGK+ A++VP
Sbjct: 102 GSFQSMGLYPWLLRSLTLQGFRIPTPIQRLAIPALLSSPPRDLVGMARTGSGKSLAYMVP 161
Query: 81 MLQRLN-QHVPQGGVRALILSPTRDLALQTLKFTKEL------------GRYTD------ 121
++QRL +H G RALIL P R+LALQ LK KEL G + D
Sbjct: 162 LVQRLGGRHSGTFGARALILLPARELALQILKVGKELARGWHAGEGDHAGEHKDTEDGKK 221
Query: 122 ---LRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178
LR L+VGG+S++ QFE ++ NPD+IIATPGRL+H + E+ ++ LKS+EYVVFDEAD
Sbjct: 222 GQSLRWGLVVGGESLDEQFEMISSNPDVIIATPGRLLHLIVEM-NLDLKSIEYVVFDEAD 280
Query: 179 CLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPD 238
LF MGF L +IL +L RQTLLFSATLP +L EFAKAGL++P LVRLD +TKIS D
Sbjct: 281 RLFEMGFQTALSEILHRLPLTRQTLLFSATLPKSLVEFAKAGLQNPKLVRLDAETKISSD 340
Query: 239 LKLAFFTLRQEEKHAALLYMIR-------------------------------EHISSDQ 267
L++AFF+++Q EK A LL ++R EH +
Sbjct: 341 LRMAFFSVKQAEKDACLLVLLRDVIGVPYGSTVPEVDEASEHRKGKGKAKKYSEHAIAPH 400
Query: 268 QTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAA 327
QTL+F +TKHHVE+L L G S YG +DQ AR + FR +T L+VTDVAA
Sbjct: 401 QTLVFAATKHHVEYLTNLLSTAGYAVSHIYGTLDQTARSEQMDNFRRGRTSILVVTDVAA 460
Query: 328 RGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSK 387
RGIDIP+L+NV+N+DFP ++F+HRVGR ARAGR G A++FV + ++ YLLDL LFL +
Sbjct: 461 RGIDIPVLENVVNYDFPSGARVFIHRVGRTARAGRQGWAWNFVMAAELPYLLDLQLFLGR 520
Query: 388 PIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNS 447
P+++ D+ G DQA I G F + +D ++ VR++ D + +LN
Sbjct: 521 PVKS---------DVTGTS---DQAYTE-SLILGPFERDKVDEEAEYVRKLYDENHNLNM 567
Query: 448 LQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREG----------LHPMF------KNVLE 491
L+ +Y ++K S S ++ K + +E HP+F V
Sbjct: 568 LRDVMRKGHGMYERSKGKASPVSYQKTKTMLKESRWGYAGTESTTHPVFFRRNPDAAVKL 627
Query: 492 GGELMALAFSERLKAFRPKQTILE--AEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIIN 549
+ A + + +FRP +T LE A+G + ++ ++ ++
Sbjct: 628 AEDARRRALLKVVDSFRPVETTLEIGAKGNSEIAQLMKQRRKALSKAAQRATLASTSAAA 687
Query: 550 LVHQQRSSKS---MEKEVEPEADSLMAKEIKETHGSKRKAKTFKDEEYFISSVPTNHHME 606
+V + + + ++E AD + + K + F+D E+++S + E
Sbjct: 688 MVEDEDAGDAEHGSDEEAPEMADEADIMAVFDMTAKKARGSKFRDSEFYMSHYQKDADTE 747
Query: 607 AGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASG 666
G S+R F + + + DL DD G Q++ + + KK GE +
Sbjct: 748 KGYSLRDGASF-VEQAQNVAFDLAGDD-GRSQERARREMKWDKKKKKFVKGTGEGAD-NV 804
Query: 667 KVVKTESGAKVKAT-KTGIYKKWKER 691
K+VKTESGAK+ AT ++G + +WK++
Sbjct: 805 KMVKTESGAKLPATYRSGRFDEWKQQ 830
>gi|448102171|ref|XP_004199738.1| Piso0_002281 [Millerozyma farinosa CBS 7064]
gi|359381160|emb|CCE81619.1| Piso0_002281 [Millerozyma farinosa CBS 7064]
Length = 939
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 289/811 (35%), Positives = 430/811 (53%), Gaps = 119/811 (14%)
Query: 16 QKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTA 75
Q KK+K G F+S S + I ++GYK PTPIQRKT+PLI+ DVV MARTGSGKTA
Sbjct: 100 QAKKAKKGTFQSFGFSKFLMANIIKRGYKQPTPIQRKTIPLIMENRDVVGMARTGSGKTA 159
Query: 76 AFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMES 135
AF++P++++L H P G RALILSP+R+LALQT + KE + TDLR +LVGGDS+E
Sbjct: 160 AFVLPLIEKLKSHSPVLGARALILSPSRELALQTFRQVKEFSKGTDLRTVVLVGGDSLEE 219
Query: 136 QFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQ 195
F L NPDI++ATPGR +H E++ + L ++EYVVFDEAD LF MGFAEQL+++L
Sbjct: 220 HFSSLMNNPDIVVATPGRFLHLKVEMQ-LDLSTMEYVVFDEADRLFEMGFAEQLNELLAA 278
Query: 196 LSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAAL 255
L +RQTLLFSATLP L FAKAGL P LVRLD ++KIS L++AFF ++ E+ A L
Sbjct: 279 LPASRQTLLFSATLPKTLVGFAKAGLTSPVLVRLDAESKISDQLEMAFFACKKNEREANL 338
Query: 256 LYMIREHIS--------------------------------------------------S 265
LY+++E I S
Sbjct: 339 LYILQEVIKLPLATPEELKKLQAENKYDSDSDAEGEEDAKKKKKRKFKKEKLPPANVLPS 398
Query: 266 DQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV 325
+ T+IFV TKHHVE+++ L +E G S YG +DQ AR + F+ T L+VTDV
Sbjct: 399 PKSTIIFVPTKHHVEYVSTLLKESGYLLSYIYGSLDQRARNQQLYNFKVGFTSILVVTDV 458
Query: 326 AARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFL 385
AARGIDIP+L NVIN+ P KIFVHRVGR ARAG G A+S V +++ YLLDL LFL
Sbjct: 459 AARGIDIPVLANVINFTLPASSKIFVHRVGRTARAGNKGWAYSIVNEKELPYLLDLELFL 518
Query: 386 SKPIRAAPSEE---EVLLDMDGVMSKIDQAIANGE-TIYGRFPQTVIDLVSDRVREIIDS 441
+ + E E+L + G S ++ I+ + + G P+ + + ++++
Sbjct: 519 GRKVLLTSMHEKKCEILREKMG-SSYVEPKISYSDRLVLGSVPRLELGSFQEFYEGLLEA 577
Query: 442 SADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPR----EGLHPMFKNVLEGGELMA 497
+L +++ +LY +T+ S+ES++R K++ + H +F LE +
Sbjct: 578 HYELRTVKGVAEKGEKLYHRTRQAASQESLKRSKEILETENWDEQHLLFGPNLEKEK--- 634
Query: 498 LAFSERLKAFRPKQTILE------AEGEAARSKHLQGPSSQWVDVM-----KKKRAVHEK 546
F +L + K+T+ E E + + + Q + +KK E+
Sbjct: 635 ENFLNKLANRKHKETVFEFHKKSNDRDEDSMAGFMNKRRKQIAPLQRKAEERKKLLEQER 694
Query: 547 IINLVHQQRSSKSMEKEVEP----------EADSLMAKEIKETHGS-----KRKAKTFKD 591
++ L H +E E+ A+S+ KE++E +K K+++D
Sbjct: 695 LLGLSH------GIENELLKADGEVGYSGVAAESVDEKELQEAFEDGDATLAKKKKSYRD 748
Query: 592 EEYFISS-VPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRG 650
+FIS P + +++ D F L A DL DD+ + KQV WDK+
Sbjct: 749 PNFFISHYAPISEQQNKQMAL--DSSFALEAGNAG-FDLQNDDT--VPVNKQVRRWDKKK 803
Query: 651 KKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNAEE 709
KY+ + S K + +E+G ++ A+ ++G + +WK++ + LK S E N ++
Sbjct: 804 GKYVNAD-----STDKKYIISENGQRIPASFRSGRFDEWKKQRNIPS-LKVGSVEANTDD 857
Query: 710 TTSVPGGRHLGGNNRKFRGGKNQQRSVPNAH 740
G N++F+ K +P+ +
Sbjct: 858 -----------GGNKRFKHKKVTAPKLPDKY 877
>gi|149241448|ref|XP_001526316.1| hypothetical protein LELG_02874 [Lodderomyces elongisporus NRRL
YB-4239]
gi|152013474|sp|A5DZT7.1|DBP10_LODEL RecName: Full=ATP-dependent RNA helicase DBP10
gi|146450439|gb|EDK44695.1| hypothetical protein LELG_02874 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 948
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 301/808 (37%), Positives = 441/808 (54%), Gaps = 129/808 (15%)
Query: 18 KKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77
KK+K+G F S S + I +KGYK PTPIQR+++PLI+ DVV MARTGSGKTAAF
Sbjct: 116 KKAKAGSFASFGFSKFLLANIAKKGYKQPTPIQRRSIPLIIDNRDVVGMARTGSGKTAAF 175
Query: 78 LVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF 137
++P++++L P GVRA+ILSP+R+LALQT K KE T+L+ +L+GGDS+E F
Sbjct: 176 VLPLIEKLKLRSP-SGVRAVILSPSRELALQTYKQVKEFSHGTNLQSIVLIGGDSLEEDF 234
Query: 138 EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS 197
++ PDII+ TPGR +H E++ L SV+Y+VFDEAD LF MGFAEQL+++L L
Sbjct: 235 GKMMTKPDIIVCTPGRFLHLKVEMQ-YDLMSVQYIVFDEADRLFEMGFAEQLNELLLALP 293
Query: 198 ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLY 257
NRQ+LLFSATLP +L EFAKAGL +P LVRLD D+K+S +L++A+FT ++ E+ A LLY
Sbjct: 294 SNRQSLLFSATLPRSLVEFAKAGLTNPVLVRLDADSKLSENLQMAYFTTKRNEREANLLY 353
Query: 258 MIRE---------------------HISSDQQ---------------------------- 268
+++E I SD++
Sbjct: 354 ILQEVIKMPLGTPEEVKKLAAMDKRSIESDEENEEAKEQNNGKKRKYKFKKERMPSAKEL 413
Query: 269 -----TLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
T+IFV TKHHVE++ L ++ G S YG +DQ ARK + FR T L+VT
Sbjct: 414 PSEKSTIIFVPTKHHVEYVTSLLKDAGYLVSYIYGTLDQHARKNQLYLFRIGLTKILVVT 473
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHL 383
DVAARGIDIP+L NVIN+ P KIF+HRVGR ARAG G A+S V S ++ YLLDL +
Sbjct: 474 DVAARGIDIPVLANVINFTLPGSSKIFIHRVGRTARAGNKGWAYSIVNSSELPYLLDLEI 533
Query: 384 FLSKPIRAAPSEE---EVLLDMDGVMSKIDQAIANGE-TIYGRFPQTVIDLVSDRVREII 439
FL K + E E+L G S I I E + G P+ ++ + ++
Sbjct: 534 FLGKKLLLTSMHEAKCELLKKKQG-GSFIPPRINYTERLVVGAIPRLDLETFQELYENLL 592
Query: 440 DSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDL----PREGLHPMFKNVLEGGEL 495
++ ++ L+ +LY +T+ S+ES++R K++ + H +F LE
Sbjct: 593 RNNYEIKVLKDVAAKGEKLYHRTRQPASQESLKRSKEILETNSWDDQHLLFGENLEK--- 649
Query: 496 MALAFSERLKAFRPKQTILEAEGEAAR-----SKHLQGPSSQWVDVMKKKRAVHEKIINL 550
M F +L+ K+T+ E + + + ++ + Q + +K + E L
Sbjct: 650 MKDDFLAKLQNRNVKETVFELKKKGVKENDSLAEFMHRRRRQLAPIQRKAQERKE----L 705
Query: 551 VHQQR---SSKSMEKEV---EPEAD----SLMAKEIKET----HGSKRKAKTFKDEEYFI 596
+ ++R S +E+EV + EA ++ E++ET + K KTFKD ++F+
Sbjct: 706 LQKERLAGLSHGIEEEVLKIDGEASGYNQNVDEAELQETFELGDEAHNKKKTFKDPQFFM 765
Query: 597 SSVPTNHHMEAGLSVRSDQGFGL-----NRLEAAVLDLVADDSGGLQKQK-QVYHWDKRG 650
S H+ A SV DQ + N +AA DL DD LQK K QV WDK+
Sbjct: 766 S-----HYAPA--SVIQDQQLSIASSFANDAQAATFDLDNDDK--LQKNKQQVMKWDKKK 816
Query: 651 KKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNAEE 709
KYI +S K + +E+G K+ AT ++G + +W+++ + LK S+ N E
Sbjct: 817 GKYIN-----SMSTDKKYIISENGTKIPATFRSGKFDEWRKQRN----LKPTSSLTNNET 867
Query: 710 TTSVPGGRHLGGNNRKFRGGKNQQRSVP 737
NN++F K++++SVP
Sbjct: 868 PE----------NNKRF---KHKKQSVP 882
>gi|448098288|ref|XP_004198888.1| Piso0_002281 [Millerozyma farinosa CBS 7064]
gi|359380310|emb|CCE82551.1| Piso0_002281 [Millerozyma farinosa CBS 7064]
Length = 959
Score = 434 bits (1115), Expect = e-118, Method: Compositional matrix adjust.
Identities = 298/840 (35%), Positives = 443/840 (52%), Gaps = 113/840 (13%)
Query: 16 QKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTA 75
Q KK+K G F+S S + I ++GYK PTPIQRKT+PLI+ DVV MARTGSGKTA
Sbjct: 120 QAKKAKKGTFQSFGFSKFLMANIIKRGYKQPTPIQRKTIPLIMENRDVVGMARTGSGKTA 179
Query: 76 AFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMES 135
AF++P++++L H P G RALILSP+R+LALQT + KE R TDLR +LVGGDS+E
Sbjct: 180 AFVLPLIEKLKSHSPVLGARALILSPSRELALQTFRQVKEFSRGTDLRTVVLVGGDSLED 239
Query: 136 QFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQ 195
F L NPDI++ATPGR +H E++ + L ++EYVVFDEAD LF MGFAEQL+++L
Sbjct: 240 HFSSLMNNPDIVVATPGRFLHLKVEMQ-LDLSTMEYVVFDEADRLFEMGFAEQLNELLAA 298
Query: 196 LSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAAL 255
L RQTLLFSATLP L FAKAGL P LVRLD ++KIS L++AFF ++ E+ A L
Sbjct: 299 LPAARQTLLFSATLPKTLVGFAKAGLTSPVLVRLDAESKISDQLEMAFFACKKNEREANL 358
Query: 256 LYMIREHIS--------------------------------------------------S 265
LY+++E I S
Sbjct: 359 LYILQEVIKLPLATPEEIKKLQAENKYDSDSDAEGEQDAKKKKKRKFKKEKLPPANVLPS 418
Query: 266 DQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV 325
+ T+IFV TKHHVE+++ L +E G S YG +DQ AR + F+ T L+VTDV
Sbjct: 419 PKSTIIFVPTKHHVEYVSTLLKESGYLLSYIYGSLDQRARNQQLYNFKVGFTSILVVTDV 478
Query: 326 AARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFL 385
AARGIDIP+L NVIN+ P KIFVHRVGR AR G G A+S V +++ YLLDL LFL
Sbjct: 479 AARGIDIPVLANVINFTLPASSKIFVHRVGRTARVGNKGWAYSIVNEKELPYLLDLELFL 538
Query: 386 SKPIRAAPSEEEVLLDMDGVM--SKIDQAIANGE-TIYGRFPQTVIDLVSDRVREIIDSS 442
+ + E+ + M S ++ ++ + + G P+ + + ++++
Sbjct: 539 GRKVLLTSMHEKKCEILKAKMGSSYVEPKVSYSDRLVLGSIPRLELGSFQEFYEGLLEAH 598
Query: 443 ADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPR----EGLHPMFKNVLEGGELMAL 498
+L +++ +LY +T+ S+ES++R K++ + H +F LE +
Sbjct: 599 YELRTVKGVAEKGEKLYHRTRQAASQESLKRSKEIIETENWDEQHLLFGPNLEKEK---E 655
Query: 499 AFSERLKAFRPKQTILE-------------AEGEAARSKHLQGPSSQWVDVMKKKRAVHE 545
F +L + K+T+ E AE R K + P + + +KK E
Sbjct: 656 NFLNKLANRKHKETVFEFHKKGNDRDEDSMAEFMNKRRKQI-APLQRKAE-ERKKLLEQE 713
Query: 546 KIINLVHQ-QRSSKSMEKEVEPE---ADSLMAKEIKETHGS-----KRKAKTFKDEEYFI 596
+++ L H + + EV A+S+ KE++E +K K+++D +FI
Sbjct: 714 RLLGLSHGIENELLKTDGEVGYSGIAAESVDEKELQEAFEDGDATLAKKKKSYRDPNFFI 773
Query: 597 SS-VPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIK 655
S P + +++ D F L A DL DD+ + KQV WDK+ KY+
Sbjct: 774 SHYAPVSEQQNKQMAL--DSSFALEAGNAG-FDLQNDDTVPI--NKQVRRWDKKKGKYV- 827
Query: 656 LNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNAEETTSVP 714
N E S K + +E+G ++ A+ ++G + +WK++ + LK S E N ++
Sbjct: 828 --NAE--STDKKYIISENGQRIPASFRSGRFDEWKKQRNIPS-LKVGSVESNTDD----- 877
Query: 715 GGRHLGGNNRKFRGGKNQQRSVPNAHVCSEIKDLDQVRKERQKKADRIAFMKGKTQKGKK 774
G N++F+ K +P+ + D + + + QK + +KG + G+K
Sbjct: 878 ------GGNKRFKHKKVTAPKLPDKYR----DDYQKQKMKVQKALETGVNVKGYSAPGQK 927
>gi|401626375|gb|EJS44323.1| dbp10p [Saccharomyces arboricola H-6]
Length = 1001
Score = 434 bits (1115), Expect = e-118, Method: Compositional matrix adjust.
Identities = 301/812 (37%), Positives = 433/812 (53%), Gaps = 105/812 (12%)
Query: 16 QKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTA 75
+K K K G F S LS V IKRKG++ PTPIQRKT+PLIL D+V MARTGSGKTA
Sbjct: 136 EKTKHKKGSFPSFGLSKIVLNNIKRKGFRQPTPIQRKTIPLILQSRDIVGMARTGSGKTA 195
Query: 76 AFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMES 135
AF++PM+++L H + G RA+ILSP+R+LA+QT K+ + T+LR LL GGDS+E
Sbjct: 196 AFILPMVEKLKGHSGKIGARAVILSPSRELAMQTFNVFKDFAKGTELRSVLLTGGDSLEE 255
Query: 136 QFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQ 195
QF + NPD+IIATPGR +H E+ ++ LKSVEYVVFDEAD LF MGF EQL+++L
Sbjct: 256 QFSMMMSNPDVIIATPGRFLHLKVEM-NLDLKSVEYVVFDEADRLFEMGFQEQLNELLAS 314
Query: 196 LSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAAL 255
L RQTLLFSATLP++L +F KAGL +P LVRLD +TKIS +L++ FF+ + ++ A L
Sbjct: 315 LPTTRQTLLFSATLPNSLVDFVKAGLVNPVLVRLDAETKISENLEMLFFSTKNADREANL 374
Query: 256 LYMIREHIS--------------------------------------------------- 264
LY+++E I
Sbjct: 375 LYILQEVIKIPLATSEQLKKLQKSNKEADDDSDDENDRQKKRRTFKKEKFRKQRMPAANE 434
Query: 265 --SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
S++ T++FV T+HHVE+++ L R+ G S YG +DQ ARK + FRA T L+V
Sbjct: 435 LPSEKATILFVPTRHHVEYISQLLRDCGYLISYIYGTLDQHARKNQLYNFRAGLTSILVV 494
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
TDVAARG+DIP+L NVIN+ P KIFVHRVGR ARAG G A+S V ++ YLLDL
Sbjct: 495 TDVAARGVDIPMLANVINYTLPGSSKIFVHRVGRTARAGNKGWAYSIVAENELPYLLDLE 554
Query: 383 LFLSKPIRAAPSEEEVLLDMDGVMSK--IDQA-----------IANGETIYGRFPQTVID 429
LFL K I P + L+D+ M K +D+ I G P+ ++
Sbjct: 555 LFLGKKILLTPMYDS-LVDL---MKKRWVDEGKPEYTFQRPKLSYTKRIILGSCPRLDVE 610
Query: 430 LVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNV 489
+ D + ++ S+ DL ++T A +LY +T+ S ES++R K++ G
Sbjct: 611 GLGDLYKNLMTSNFDLQLAKKTAMKAEQLYYRTRTSASPESLKRSKEIIASGWDAQNAFF 670
Query: 490 LEGGELMALAFSERLKAFRPKQTILE----AEGEAA-----RSKHL---QGPSSQWVDVM 537
+ E L F +L+ R K+T+ E + E A R + L Q +++ +++
Sbjct: 671 GKNEEKEKLDFLAKLQNRRNKETVFEFTRNPDDEMAVFMKRRRRQLAPIQRKATEKRELL 730
Query: 538 KKKR------AVHEKIINLVHQQRS---SKSMEKEVEPEADSLMAKEIKETHGSKRKAKT 588
+K+R ++ ++I+ + S+ KE E +AD L+ + E K+
Sbjct: 731 EKERMAGLSHSIEDEILKGNDGETGYTVSEDALKEFE-DADQLLEAQENEDKKKKKPKTF 789
Query: 589 FKDEEYFISS-VPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWD 647
KD +F+S P + L + S GF + AA L DD + KQ WD
Sbjct: 790 -KDPTFFLSHYAPAGEIQDKQLQITS--GFANDAANAAYD-LNNDDKVQVHKQTATVKWD 845
Query: 648 KRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGN 706
K+ KKY+ N + + + K + ESG K+ A+ ++G + W + + K LK S E +
Sbjct: 846 KKRKKYV---NTQGID-NKKYIIGESGQKIAASFRSGRFDDWSKARNLKP-LKVGSREAS 900
Query: 707 AEETTSVPGGRHLGGNNRKFRGG-KNQQRSVP 737
+ G R RG K++Q P
Sbjct: 901 IPSNMLTDPSQTPGAQGRTVRGKFKHKQMKAP 932
>gi|320581590|gb|EFW95810.1| Putative ATP-dependent RNA helicase of the DEAD-box protein family
[Ogataea parapolymorpha DL-1]
Length = 1254
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 292/790 (36%), Positives = 426/790 (53%), Gaps = 111/790 (14%)
Query: 18 KKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77
KK+KSG F S L+ + + +KGYK PTPIQRKT+PLI+S DVV MARTGSGKTAAF
Sbjct: 82 KKAKSGTFASFGLAKYILANLSKKGYKQPTPIQRKTIPLIMSNRDVVGMARTGSGKTAAF 141
Query: 78 LVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF 137
L+P++++L HV + GVRA++LSP+R+LA+QT K KE R +DLR LL+GGDSME QF
Sbjct: 142 LLPLIEKLKTHVAKIGVRAIVLSPSRELAMQTSKQFKEFSRGSDLRSLLLIGGDSMEDQF 201
Query: 138 EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS 197
+ NPD+IIATPGR +H +E++ + L++VEY+V+DEAD LF MGFAEQL+++L L
Sbjct: 202 GAMMANPDVIIATPGRFLHLKTEMQ-LDLRTVEYIVYDEADRLFEMGFAEQLNELLAALP 260
Query: 198 ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLY 257
E RQ++LFSATLP L +FAKAGL +P LVRLD +TKIS +L++ F + ++ E+ A LL
Sbjct: 261 EKRQSMLFSATLPRNLVDFAKAGLTNPVLVRLDSETKISDELQMCFISTKKNEREANLLL 320
Query: 258 MIREHIS-------------------------------------------------SDQQ 268
+++E I +
Sbjct: 321 LLQEVIKMPVATPEELRRLDAANRLDDEDDEDEEEGKKKQKKRPRREKLPRAGELPTKHS 380
Query: 269 TLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAAR 328
T++FV TKHHVE++ +L ++ G + YG +DQ AR+ + FRA L+VTDVAAR
Sbjct: 381 TIVFVPTKHHVEYVTLLLKDAGYATAYIYGSLDQHARRRQLLNFRAGLCPILVVTDVAAR 440
Query: 329 GIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKP 388
GIDIP+L NVIN+ FP KIFVHRVGR ARAG +G A+S V ++ YLLDL +FL +
Sbjct: 441 GIDIPVLANVINYSFPSSSKIFVHRVGRTARAGNSGWAYSIVGEAELPYLLDLEVFLGRK 500
Query: 389 IRAAPSEEEVL-------LDMDGVMSKIDQA-IANGE-TIYGRFPQTVIDLVSDRVREII 439
+ E+ + L+ G M+ + ++ E + G P+ +I + + I+
Sbjct: 501 VLLTSMHEKKVQLLKDKYLEQHGSMAGFQEPKLSYTERLVLGSAPRKLIGELQELYETIM 560
Query: 440 DSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVLEGG--ELMA 497
+ D+ SL+ +LY +T+ S ES+RR K++ G +N+L G EL
Sbjct: 561 KHNYDIRSLKAVADKGEQLYFRTRSGASVESLRRAKEIVNLGWDA--QNLLFGKNEELEK 618
Query: 498 LAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKR----AVHEK------- 546
F +L+ + K+T+ E R L VD+M +R +V K
Sbjct: 619 EQFLAKLQNRKNKETVFEF---GKRDDSL-------VDLMNTRRRQIASVQRKAQERREL 668
Query: 547 -----IINLVHQQRSSKSMEKEVEPEADSLMAKEIKET--------HGSKRKAKTFKDEE 593
+ L H ++ ++ +E++ T K K K+FKD
Sbjct: 669 LELERVSGLTHTLEDELFKDERGVEVGYNVNEEELRRTFEDGDVVLESKKPKKKSFKDPN 728
Query: 594 YFISS-VPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSG-GLQKQKQVYHWDKRGK 651
Y+IS P + E LS+ D GF AA D+ A+D +Q+Q WDK+
Sbjct: 729 YYISHYAPASAIQEQQLSL--DSGFTAEANRAA-FDIDAEDEKVAVQRQTARVLWDKKAG 785
Query: 652 KYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNAEET 710
KY K+ + + K + ESG K+ A+ ++G + +WK + + K + E N
Sbjct: 786 KYKKVQDDK------KYIIGESGQKIPASYRSGKFDEWK--AQHNINFKTGAAEQNRGFD 837
Query: 711 TSVPGGRHLG 720
+ G R G
Sbjct: 838 VGLSGKRQRG 847
>gi|261327581|emb|CBH10557.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
gambiense DAL972]
Length = 843
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 269/747 (36%), Positives = 411/747 (55%), Gaps = 86/747 (11%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
+ GGF+S L + I R GY VPTPIQR+ +P ++ G D+VAMARTGSGKTAAFL+P
Sbjct: 24 RGGGFQSFGLEKPLLDGILRLGYNVPTPIQRRAIPPMMQGNDIVAMARTGSGKTAAFLIP 83
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
ML L H GVR LILSPTR+L++Q L+F ++ ++ DLR LVGG+S+E QFE L
Sbjct: 84 MLHLLKAHSKIVGVRGLILSPTRELSMQILRFGIQISKFLDLRFVALVGGNSLEQQFEML 143
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
A NPDI++ATPGR++H + E + L V+ +V DEAD LF +G Q+ I+ ++ E+
Sbjct: 144 ASNPDIVVATPGRILHIMEEA-SLQLSMVKSIVLDEADRLFELGLQPQIVAIMQKIPESC 202
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
Q LFSAT+PS LAEF AGL +P ++RLD + K+S LK + F +R +EK AAL+ +++
Sbjct: 203 QRSLFSATMPSVLAEFTNAGLHNPVVLRLDAEMKLSDKLKQSAFFVRNDEKIAALIVLLK 262
Query: 261 EHI----------SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVS 310
+ I S+++Q L+FV +K HV++L + + S +G MDQ+ R+ V
Sbjct: 263 KVIGIEASDKKSESAEKQALVFVESKFHVDYLEAIMEAYHISCSAVHGQMDQEGRRNAVR 322
Query: 311 RFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFV 370
F R+T +IVTDVAARG+D+PLLDNV+N+ F P PK+FVHRVGR ARAGR+G A+S +
Sbjct: 323 AFAKRETSVMIVTDVAARGLDLPLLDNVVNFSFAPTPKLFVHRVGRVARAGRSGAAYSIL 382
Query: 371 TSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDL 430
T ED + +DL FL++P++ ++L D + YGR P+ + L
Sbjct: 383 TFEDFPHYVDLMAFLNRPLQCRKEPGDLLFTAD-------------DGCYGRMPEDALQL 429
Query: 431 VSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK----DLPREGLHPMF 486
D +R ++ + +L + + NA + +++TK + + I+ + LHP+F
Sbjct: 430 ELDFIRRLVQNDVELKGMTKVVENAHKKFARTKKKATHDGIQTARQSEYQFDSTPLHPIF 489
Query: 487 KNVLEGGELMALAFSERLKAFRPKQTILE-AEGE----------------AARSKHLQGP 529
LE E+ A LK F+ K+++LE GE R +
Sbjct: 490 VERLEKKEIAADEARVGLKRFKAKESLLEIVHGEKMMEIKKPVTVQSLWREQRQRGEDKE 549
Query: 530 SSQWVDV-MKKKRAVH--EKIINLVHQQ----RSSKSMEKEVEPEADSLMAKEIKETHGS 582
S+ VD KK+ H E +++V ++ + S +M +++ A+SL+ +K
Sbjct: 550 GSEKVDTGSDKKQGKHESENCVSMVARKNGAVKGSSTMGRKLSL-AESLL---LKAQERK 605
Query: 583 KRKAKTFKDEEY----FISSVPTN--HH----------MEAGLSVRSDQGFGL-----NR 621
KR+ + EE I+ P +H ME D+ F + N
Sbjct: 606 KREREAVNGEENDDVDGITVFPARAAYHSNSRAGAIGGMECNSDKYRDREFFMEDVKRNT 665
Query: 622 LE-------AAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESG 674
+E A D+ AD + Q+++QVY W K+ +Y+++N + A + VK E+G
Sbjct: 666 IEDVHYSVKDATFDIGADTAQEAQQRRQVYAWSKKKNRYVRMNVND-AKALLRGVKNEAG 724
Query: 675 AKVK-ATKTGIYKKWKERSHKKVYLKG 700
V TK Y KW ++S+ ++ G
Sbjct: 725 KAVNFKTKLKTYSKWTKKSNLRIQDAG 751
>gi|164660566|ref|XP_001731406.1| hypothetical protein MGL_1589 [Malassezia globosa CBS 7966]
gi|159105306|gb|EDP44192.1| hypothetical protein MGL_1589 [Malassezia globosa CBS 7966]
Length = 948
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 292/829 (35%), Positives = 445/829 (53%), Gaps = 152/829 (18%)
Query: 20 SKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILS--GADVVAMARTGSGKTAAF 77
S G F+S+ L P++ R++ +G+ PTPIQR+ +P IL+ DVV MARTGSGKT ++
Sbjct: 76 SGGGSFQSMGLHPSLLRSLLLRGFTTPTPIQRRAIPAILAQPSQDVVGMARTGSGKTLSY 135
Query: 78 LVPMLQRLN-QHVPQGGVRALILSPTRDLALQTLKFTKEL---------GRYTDLRISLL 127
+VP+LQRLN +H G+++LIL P+R+LA Q LK K+L R +R +++
Sbjct: 136 IVPLLQRLNGRHSTSFGIKSLILCPSRELAFQILKVGKDLARGWRSDDNARNEAIRWAVI 195
Query: 128 VGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAE 187
VGG+ ++ QF + NPD++IATPGRL+H + E+ ++ LKSVEYVVFDEAD LF MGFAE
Sbjct: 196 VGGEGLDEQFAMMTANPDVVIATPGRLLHLVVEM-NLDLKSVEYVVFDEADRLFEMGFAE 254
Query: 188 QLHKILGQLSENRQTLLFSATLPSALAEFAKAGLR-DPHLVRLDVDTKISPDLKLAFFTL 246
QL ++L +L RQTLLFSATLP L EFA+AGL +P L+RLD D+KISPDL++AFF++
Sbjct: 255 QLEELLRRLPTTRQTLLFSATLPKTLVEFARAGLEANPKLIRLDADSKISPDLRMAFFSI 314
Query: 247 RQEEKHAALLYMIREHI--------------------------------SSDQ----QTL 270
+ +EK AALL ++R+ I + DQ QT+
Sbjct: 315 KPQEKDAALLQLLRDVIQVPVHTAPDTSVSSSTSSAAAADSKKKRKRAHAVDQLQPYQTI 374
Query: 271 IFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGI 330
IF +TKHHVE+L +L G S Y +DQ AR I ++ FR+ +T LIVTD+AARGI
Sbjct: 375 IFCATKHHVEYLLLLLTTMGYTCSHIYSSLDQAARSIQMNLFRSGQTSLLIVTDLAARGI 434
Query: 331 DIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIR 390
D+P+L++VIN+DFPP+P+IFVHRVGR ARAGR G A+S T ++ YL DL LFL++P+
Sbjct: 435 DLPVLEHVINYDFPPQPRIFVHRVGRTARAGRRGWAWSLCTHAELPYLCDLQLFLARPLV 494
Query: 391 AAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREII----DSSADLN 446
++ + + + D +G + G FP+ V+D + +R + D++ +
Sbjct: 495 SSHT-----------LPRDDVHDLHGTMVLGTFPREVLDDECESIRHAMHVESDTATTFD 543
Query: 447 SLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGL----------------HPM----F 486
SL A +Y +++P S ES RR KD+ ++ HP+
Sbjct: 544 SLTGVVKRAHNMYMRSQPKASAESYRRTKDMLKDAERSAVTGVESQGWALAGHPLEVKGV 603
Query: 487 KNVLEGGELMALAFSERLK---------------------AFRPKQTILE--AEGEAARS 523
+VL+ E L E +K AFRP +T+ E A G+ A
Sbjct: 604 HDVLQRPEKYQLHAREAVKRSRTHDDPLAGARAALLAKVNAFRPGETVFEMGAHGQRAPL 663
Query: 524 KHLQGPSSQWVDVMKKK-RAV------------HEKII----NLVHQQRSSKSMEKEVEP 566
L + +D +++ RA+ HE + + H + ++ ++ EP
Sbjct: 664 ARLMQDRRRLLDTKQQRARAIEAAKRGGSLQADHESVDDGNGDGAHDAQDDGAVSRDTEP 723
Query: 567 EADSLMAKEIKETHGSKRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAV 626
A +A E E K ++D +++ T E G S L++
Sbjct: 724 SA---LANE-DEISSVFDTGKDYRDPSTYLNYQQTGAAEERGYSF-------LDQARRIT 772
Query: 627 LDLVADDSG--GLQKQKQVYHWDKRGKKYIKLNNGERVSASG-KVVKTESGAKVKAT-KT 682
+D+ DD G + ++ WD + KK+I G+ A K++++E+G K+ A+ ++
Sbjct: 773 VDMAGDDLGPSAVTQRPNPRRWDTKKKKFIM---GDGTGADNQKLIRSETGLKLPASYRS 829
Query: 683 GIYKKWKERSHKKVYLKGASNEGNAEET-----TSVPGGRHLGGNNRKF 726
G + +W+++ + G +E N T +SV GG G R+F
Sbjct: 830 GRFDEWQKQQQVSLPHVG-EDESNMPATARRMASSVQGGPRPG---RRF 874
>gi|72387978|ref|XP_844413.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|62358560|gb|AAX79020.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei]
gi|70800946|gb|AAZ10854.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
Length = 843
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 269/747 (36%), Positives = 411/747 (55%), Gaps = 86/747 (11%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
+ GGF+S L + I R GY VPTPIQR+ +P ++ G D+VAMARTGSGKTAAFL+P
Sbjct: 24 RGGGFQSFGLEKPLLDGILRLGYNVPTPIQRRAIPPMMQGNDIVAMARTGSGKTAAFLIP 83
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
ML L H GVR LILSPTR+L++Q L+F ++ ++ DLR LVGG+S+E QFE L
Sbjct: 84 MLHLLKAHSKIVGVRGLILSPTRELSMQILRFGIQISKFLDLRFVALVGGNSLEQQFEML 143
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
A NPDI++ATPGR++H + E + L V+ +V DEAD LF +G Q+ I+ ++ E+
Sbjct: 144 ASNPDIVVATPGRILHIMEEA-SLQLSMVKSIVLDEADRLFELGLQPQIVAIMQKIPESC 202
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
Q LFSAT+PS LAEF AGL +P ++RLD + K+S LK + F +R +EK AAL+ +++
Sbjct: 203 QRSLFSATMPSVLAEFTNAGLHNPVVLRLDAEMKLSDKLKQSAFFVRNDEKIAALIVLLK 262
Query: 261 EHI----------SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVS 310
+ I S+++Q L+FV +K HV++L + + S +G MDQ+ R+ V
Sbjct: 263 KVIGIEASDKKSESAEKQALVFVESKFHVDYLEAIMEAYHISCSAVHGQMDQEGRRNAVR 322
Query: 311 RFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFV 370
F R+T +IVTDVAARG+D+PLLDNV+N+ F P PK+FVHRVGR ARAGR+G A+S +
Sbjct: 323 AFAKRETSVMIVTDVAARGLDLPLLDNVVNFSFAPTPKLFVHRVGRVARAGRSGAAYSIL 382
Query: 371 TSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDL 430
T ED + +DL FL++P++ ++L D + YGR P+ + L
Sbjct: 383 TFEDFPHYVDLMAFLNRPLQCRKEPGDLLFTAD-------------DGCYGRMPEDALQL 429
Query: 431 VSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK----DLPREGLHPMF 486
D +R ++ + +L + + NA + +++TK + + I+ + LHP+F
Sbjct: 430 ELDFIRRLVQNDVELKGMTKVVENAHKKFARTKKKATHDGIQTARQSEYQFDSTPLHPIF 489
Query: 487 KNVLEGGELMALAFSERLKAFRPKQTILE-AEGE----------------AARSKHLQGP 529
LE E+ A LK F+ K+++LE GE R +
Sbjct: 490 VERLEKKEIAADEARVGLKRFKAKESLLEIVHGEKMMEIKKPVTVQSLWREQRQRGEDKE 549
Query: 530 SSQWVDV-MKKKRAVH--EKIINLVHQQ----RSSKSMEKEVEPEADSLMAKEIKETHGS 582
S+ VD KK+ H E +++V ++ + S +M +++ A+SL+ +K
Sbjct: 550 GSEKVDTGSDKKQGKHESENCVSMVARKNGAVKGSSTMGRKLSL-AESLL---LKAQERK 605
Query: 583 KRKAKTFKDEEY----FISSVPTN--HH----------MEAGLSVRSDQGFGL-----NR 621
KR+ + EE I+ P +H ME D+ F + N
Sbjct: 606 KREREAVNGEENDDVDGITVFPARAAYHSNSSAGAIGGMECNSDKYRDREFFMEDVKRNT 665
Query: 622 LE-------AAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESG 674
+E A D+ AD + Q+++QVY W K+ +Y+++N + A + VK E+G
Sbjct: 666 IEDVHYSVKDATFDIGADTAQEAQQRRQVYAWSKKKNRYVRMNVND-AKALLRGVKNEAG 724
Query: 675 AKVK-ATKTGIYKKWKERSHKKVYLKG 700
V TK Y KW ++S+ ++ G
Sbjct: 725 KAVNFKTKLKTYSKWTKKSNLRIQDAG 751
>gi|116196072|ref|XP_001223848.1| hypothetical protein CHGG_04634 [Chaetomium globosum CBS 148.51]
gi|118575168|sp|Q2H0R2.1|DBP10_CHAGB RecName: Full=ATP-dependent RNA helicase DBP10
gi|88180547|gb|EAQ88015.1| hypothetical protein CHGG_04634 [Chaetomium globosum CBS 148.51]
Length = 762
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 217/390 (55%), Positives = 276/390 (70%), Gaps = 35/390 (8%)
Query: 15 KQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKT 74
+ K KSGGF+++ L+ N+ RAI RKG+ VPTPIQRKT+PL+L DVV MARTGSGKT
Sbjct: 78 QSKSAKKSGGFQAMGLNSNLLRAISRKGFSVPTPIQRKTIPLVLERRDVVGMARTGSGKT 137
Query: 75 AAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSME 134
AAF++PM++RL H + G RA+I+SP+R+LALQTLK KELG+ TDL+ LLVGGDS+E
Sbjct: 138 AAFVIPMIERLKAHSARVGARAIIMSPSRELALQTLKVVKELGKGTDLKTVLLVGGDSLE 197
Query: 135 SQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILG 194
QF +A NPDIIIATPGR +H E+ ++L SV YVVFDEAD LF MGFA QL +IL
Sbjct: 198 EQFGLMAANPDIIIATPGRFLHLKVEM-SLNLSSVRYVVFDEADRLFEMGFAAQLTEILH 256
Query: 195 QLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAA 254
L +RQTLLFSATLPS+L EFA+AGL++P L+RLD +TK+SPDL+ AFF+++ EK A
Sbjct: 257 ALPPSRQTLLFSATLPSSLVEFARAGLQEPSLIRLDAETKVSPDLESAFFSVKGGEKEGA 316
Query: 255 LLYMIREHI------------SSDQQ----------------------TLIFVSTKHHVE 280
LL+++ + I +D+Q T+IF +TKHHVE
Sbjct: 317 LLHILHDVIKMPLGVPEGIEEETDEQQARKRKRDSERRNRKEKPTEHSTIIFTATKHHVE 376
Query: 281 FLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN 340
++ L R G S YG +DQ ARKI V FR +T L+VTDVAARGIDIP+L NVIN
Sbjct: 377 YIAHLLRHAGFSVSYIYGSLDQTARKIQVDNFRRGRTNILVVTDVAARGIDIPVLANVIN 436
Query: 341 WDFPPKPKIFVHRVGRAARAGRTGTAFSFV 370
+DFPP+PKIFVHRVGR ARAG+ G A++ +
Sbjct: 437 YDFPPQPKIFVHRVGRTARAGQRGWAYALL 466
Score = 43.5 bits (101), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 9/93 (9%)
Query: 625 AVLDLVADDSG---GLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT- 680
A +DL DD GL + ++ WDKR KY+ N + S K+++ ESG K+ A+
Sbjct: 584 AAMDLANDDGAKAFGLPTRSKL-RWDKRHSKYVARANDDDGSRGAKMIRGESGVKIAASF 642
Query: 681 KTGIYKKWKERSHKKVYLKGASNEGNAEETTSV 713
++G + KW+ R+++ L G G AE+ V
Sbjct: 643 QSGRFDKWR-RANRLGRLPGV---GEAEKANLV 671
>gi|321252662|ref|XP_003192483.1| DEAD box RNA helicase [Cryptococcus gattii WM276]
gi|317458951|gb|ADV20696.1| DEAD box RNA helicase, putative [Cryptococcus gattii WM276]
Length = 798
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 277/726 (38%), Positives = 402/726 (55%), Gaps = 100/726 (13%)
Query: 15 KQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGA--DVVAMARTGSG 72
K+K G + +LN+ P++ R++ + +K PTPIQR +P LS D++ MARTGSG
Sbjct: 19 KEKTSGPGGQWRALNVGPDLIRSLLMRKFKSPTPIQRAAIPPSLSTPPRDILGMARTGSG 78
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD----------- 121
KT A+L+P+LQR G RALIL P+R+LA+Q K+L R +
Sbjct: 79 KTLAYLIPLLQRTGSTHHGQGPRALILCPSRELAVQIYSVGKDLARGMNKSNGKGKNKDE 138
Query: 122 ------------LRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSV 169
LR ++++GG+ M++QFE+++ NPDI+IATPGR +H + E+ M L+ +
Sbjct: 139 GEEDEEGKGKEGLRWAVIIGGEGMDAQFEKMSSNPDIVIATPGRFLHLIVEMH-MDLRHL 197
Query: 170 EYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRL 229
+ V++DEAD LF MGF QL +IL +L RQ LLFSATLPS++AEFAKAGL +P LVRL
Sbjct: 198 QTVIYDEADRLFEMGFDVQLREILHRLPSTRQNLLFSATLPSSVAEFAKAGLVNPLLVRL 257
Query: 230 DVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI-----------SSDQQTLIFVSTKHH 278
D + KISPDL L F +++ EK A+LL ++RE I SS Q ++FV+TKHH
Sbjct: 258 DAEQKISPDLSLKFLSVKPGEKEASLLVLLREIIGKPNQPQPADPSSASQAIVFVATKHH 317
Query: 279 VEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNV 338
V+++ L G S+ Y +DQ AR+ ++ FR +T L+VTDVAARG+DIP++D+V
Sbjct: 318 VDYVAELLSTTGYRTSLIYSSLDQVARQQQLAGFRNHQTDILVVTDVAARGLDIPVMDHV 377
Query: 339 INWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEV 398
IN+DFP P+IFVHRVGR ARAGR GTA+S + ED YL DLH FL P E
Sbjct: 378 INYDFPAGPRIFVHRVGRTARAGRKGTAYSLIVKEDFPYLCDLHTFLGTERMGEPVEALR 437
Query: 399 LLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRL 458
L I+Q N E ++ +T L S +R ++ + RT N
Sbjct: 438 SL-------PIEQLSENIEYVFHNLDETAPHLTS--LRNVMRKGQGMFERSRTKANPTS- 487
Query: 459 YSKTKPLPSKESIRRGKDLPREGLHPMFKNVLEG------GELMALAFSERLKAFRPKQT 512
Y + K L S S + PR + MF++ +E L+A ++ AF P +T
Sbjct: 488 YRQAKALASALS----NNPPR--IDDMFEDAMEDEVNEEKARLLA-----KVAAFTPSET 536
Query: 513 ILEA---EGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKSMEKEVEPEAD 569
+ E E E+A V + K+++ V E+ Q+R SK+ E E
Sbjct: 537 VFEVGKRESESA------------VIMKKRRKTVDER------QKRVSKA---ETEKSTA 575
Query: 570 SLMAK-EIKETHGSKRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLD 628
S M K +KE + K FKD +++ E G S++S G+ L A+ D
Sbjct: 576 SGMEKAPVKELPAPQLPTKNFKDPSFYLDHTQRGAEAEKGYSLKS----GVESLSGAITD 631
Query: 629 LVADDSGGLQKQKQV-YHWDKRGKKYIKLNNGERVSASG-KVVKTESGAKVKAT-KTGIY 685
+ AD+ G + QK WD++ K+IK N SA G K++++ESGA + A+ +G Y
Sbjct: 632 MTADEGTGPKAQKASQLSWDRKKHKFIKKNG----SADGEKMIRSESGALLPASYSSGKY 687
Query: 686 KKWKER 691
++WK +
Sbjct: 688 QEWKSK 693
>gi|126644777|ref|XP_001388110.1| hypothetical protein [Cryptosporidium parvum Iowa II]
gi|126117338|gb|EAZ51438.1| hypothetical protein cgd3_2330 [Cryptosporidium parvum Iowa II]
Length = 862
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 268/743 (36%), Positives = 412/743 (55%), Gaps = 76/743 (10%)
Query: 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPML 82
G F+ SP + +IK GY +PTPIQRK P IL+G DVVAMARTGSGKTA F++PM+
Sbjct: 4 GTFQCFGFSPKLLESIKIIGYSLPTPIQRKCFPSILAGRDVVAMARTGSGKTAGFVLPMI 63
Query: 83 QRLN-QHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
+RL H G+R +ILSPTR+LALQT + ++L T+L + L GG S++ QFE L+
Sbjct: 64 ERLGCSHSQIVGIRGVILSPTRELALQTYRVVRKLACKTNLVVCALTGGSSLDRQFESLS 123
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
NPDI++ATPGRL HH+ E +SL +V+ +V DEAD LF MG A Q+ KIL + +NRQ
Sbjct: 124 GNPDIVVATPGRLFHHIIEA-GLSLIAVKIIVLDEADRLFEMGLASQIEKILESIPKNRQ 182
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
+L SAT+P+ALA F+K L +P ++++D D +S LKL F +R++EK A+LLY++R
Sbjct: 183 CVLVSATMPTALASFSKVMLNEPEVIQIDSDYILSETLKLTFLFVREDEKLASLLYLLRN 242
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
I S ++ +IF +TKHHV+++ + + S YG+MDQ+AR +H++ FR K+ LI
Sbjct: 243 TIPSHERAIIFCATKHHVDYIVKILESNNIIVSYIYGNMDQEARTMHLNTFRKNKSRALI 302
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
VTD+AARG+DIP++ VIN+DFP PK+FVHR GR ARAG+ G AFS +TS D+ Y +DL
Sbjct: 303 VTDIAARGVDIPMIKYVINFDFPLSPKLFVHRTGRTARAGQHGRAFSLITSRDLPYTIDL 362
Query: 382 HLFLSKPIRAAPSEE---------------EVLLDMDGV----MSKIDQAIAN---GET- 418
LFL + S++ E + D + +S I A N GE+
Sbjct: 363 CLFLGLKMTTLTSKQTTDSSNYSLNTENRVEAGIRDDDIHEEGISFIKPASLNDFHGESR 422
Query: 419 -IYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDL 477
I FP +++ S + ++ ++++ +R+ +A+ LY KT+ SKES++R ++L
Sbjct: 423 LILAGFPDLTLEIES--IERVLTENSEIERCRRSMESAYLLYLKTRTPSSKESLKRSREL 480
Query: 478 PRE---------GLHPMFKNVLEGGELMALAFS----------ERLKAFRPKQ------- 511
+ +HP L + F + LK+FRP +
Sbjct: 481 LEKCGGVSKILMSIHPDLNIDTNETNLNIVTFQNLGVISDPLLDHLKSFRPTENKTHNKY 540
Query: 512 -TILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKSMEKEVEPEADS 570
+ +A G+ ++ + + + K +K S + E+ ++
Sbjct: 541 GCLNQATGKMVLKSSIKMKKIKDMGNVVKSILSEDKFAIGTSISESQNGISDEISSN-NN 599
Query: 571 LMAKEIKETHGSKRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLV 630
+ + + K++ K+ E+F +P + G RS GL +LE++ D+
Sbjct: 600 ISQNFVNKKRKPKKQCNRVKESEHFF--IP--YKNSEGEVSRST---GL-QLESSSFDIN 651
Query: 631 ADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVK-TESGAKVKA--TKTGIYKK 687
D+ G +++QK V W+ + K+Y ++ +S + K ESG KVK TG YKK
Sbjct: 652 PDEEGEMKRQKCVRKWNSKRKRYELID----ISKKNSIKKFNESGIKVKGELKCTGQYKK 707
Query: 688 WKERSHKKVYLKGASNEGNAEET 710
WK ++ K+ N G E+T
Sbjct: 708 WKANTNLKI-----QNVGEIEDT 725
>gi|403170885|ref|XP_003330153.2| hypothetical protein PGTG_11063 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375168932|gb|EFP85734.2| hypothetical protein PGTG_11063 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 1018
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 305/839 (36%), Positives = 444/839 (52%), Gaps = 171/839 (20%)
Query: 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGA--DVVAMARTGSGKTAAFLVP 80
G F+SL L P++ RAI +G+ PTPIQR +P IL+ DVV MARTGSGKT A+L+P
Sbjct: 82 GSFQSLGLHPSLLRAILLRGFNSPTPIQRAALPHILASPPRDVVGMARTGSGKTLAYLIP 141
Query: 81 MLQRLNQ-HVPQGGVRALILSPTRDLALQTLKFTKELGR--------------------- 118
++Q L+ H Q G+RALIL PTR+LALQ LK K+L +
Sbjct: 142 LIQTLSGVHSVQFGIRALILVPTRELALQVLKVGKDLAKGFIQGDRSKPSTSQDSETNHK 201
Query: 119 YTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178
LR L+VGGDS+E QF + NPD+IIATPGRL+H + E+ ++ LKSV +VVFDEAD
Sbjct: 202 AEGLRWGLIVGGDSLEDQFTMFSTNPDVIIATPGRLLHLVVEM-NLDLKSVAFVVFDEAD 260
Query: 179 CLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPD 238
LF MGFA QL + L +L NRQTLLFSATLP +L EFAKAGL++P L+RLD ++KIS D
Sbjct: 261 RLFEMGFATQLEETLHRLPANRQTLLFSATLPKSLVEFAKAGLQNPKLIRLDSESKISSD 320
Query: 239 LKLAFFTLRQEEKHAALLYMIREHIS---------------------------------- 264
L++AF +++ EK AALL +I +
Sbjct: 321 LQMAFLSVKPIEKEAALLVLISNIVGVPKADTTEQPNESFNHQSQPNFSRGSGANLSKIR 380
Query: 265 -------SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKT 317
+ QT++F +TKHHVE+L L G S+ YG +DQ AR+ + FR +T
Sbjct: 381 RKPTRELAAHQTIVFTATKHHVEYLGGLLVAAGYRVSLIYGALDQTARREQLDSFRLGQT 440
Query: 318 MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAY 377
L+VTD+AARGIDIP+L+NVIN+DFP + FVHRVGR ARAGR G A+S +T ++ +
Sbjct: 441 NILVVTDLAARGIDIPILENVINYDFPSSARAFVHRVGRTARAGRKGWAYSLITQSELPF 500
Query: 378 LLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVRE 437
L+DL LFLS+P+ A P L + S+ D + + G P+ ++D ++ VRE
Sbjct: 501 LMDLQLFLSRPLLACP------LPANEDPSQTD---FSSSLVIGTIPRELLDAETEYVRE 551
Query: 438 -IIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREG------------LHP 484
++ ++ L +L A ++Y K++ S ES RR K+ G +H
Sbjct: 552 TLVSPNSALIALATVVKRAQKMYEKSQSTASNESHRRAKEFVLNGKGFSGAKNEEASIHL 611
Query: 485 MFKN---------------------VLEGGELMALAFSERLKAFRPKQTILE----AEGE 519
+FK+ V +L+A ++ F P +T+ E +G
Sbjct: 612 IFKDRKQELPSTQRGVKRTKKDDQTVKLRDQLLA-----KVNQFTPNETVFEIGTRGKGV 666
Query: 520 AAR---------SKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKSMEKEVEPEADS 570
AA+ K + G S+ +++ + E+II+ S S+ K+ P S
Sbjct: 667 AAQLMRDRRKSMGKKIAG--SKEAAKLREDQLRAEQIID------PSPSLAKQTCPSGPS 718
Query: 571 -----LMAK---EIKETHGSKRK----AKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFG 618
L+A E++ET RK + F+D E +++ + E G ++ ++G
Sbjct: 719 DKQVALVAATEGELEETFEMPRKKPKVKEGFRDPEAYLTYEQSGAAEEKGYNL--NEGTS 776
Query: 619 ---LNRLEAAVLDLVADDSGGL------QKQKQVYHWDKRGKKYIKLNNGERVSASGKVV 669
+ + + A+ DL +D G L QK QV WD++ KK++K+ G+ + K+V
Sbjct: 777 AEFVTQSKVALFDLGTNDEGKLACLSNAQKASQV-KWDRKTKKFVKV--GQVGQDNVKLV 833
Query: 670 KTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNAEETTSVPGGRHLGGNNRKFR 727
KTESG K+ A+ KTG + WK+ ++ N G E + P HL +RKFR
Sbjct: 834 KTESGVKLPASFKTGSFDNWKKAQKIRI-----PNVGEQELQNTHPFN-HL---HRKFR 883
>gi|389744407|gb|EIM85590.1| DEAD-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 910
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 279/779 (35%), Positives = 414/779 (53%), Gaps = 133/779 (17%)
Query: 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGA--DVVAMARTGSGKTAAFLVP 80
G F+S+ L P + R++ +G++ PTPIQR+++P++LS D+V MARTGSGK+ AFLVP
Sbjct: 30 GSFQSMGLHPWLLRSLTLQGFRTPTPIQRQSIPVLLSNPPRDLVGMARTGSGKSLAFLVP 89
Query: 81 MLQRLN-QHVPQGGVRALILSPTRDLALQTLKFTKELGRY-------------------- 119
++QRL +H G RALI+ P R+LALQ +K KEL R
Sbjct: 90 LIQRLGGRHATSFGARALIMLPARELALQVMKVGKELARGWREGDGGHAGDKDNDDAEDG 149
Query: 120 ---TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDE 176
LR L+VGG+ ++ QFE ++ NPD+IIATPGRL+H + E+ ++ L+SV+YVVFDE
Sbjct: 150 KRGQALRWGLIVGGEGLDEQFEMISSNPDVIIATPGRLLHLIVEM-NLDLRSVQYVVFDE 208
Query: 177 ADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKIS 236
AD LF MGF L +I+ +L RQTLLFSATLP +L +FAKAGL +P LVRLD ++KIS
Sbjct: 209 ADRLFEMGFETALTEIVSRLPPTRQTLLFSATLPKSLVDFAKAGLDNPKLVRLDAESKIS 268
Query: 237 PDLKLAFFTLRQEEKHAALLYMIRE---------------------------------HI 263
DL++AFF+++Q EK A+LL ++R+ +
Sbjct: 269 SDLRMAFFSVKQTEKDASLLALLRDVICVPLGQNNPDKAEEDGEKQKKGKGKGKSGGPQL 328
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
++ QTL+F +TKHHVE+L L G S YG +DQ AR + FR T L+VT
Sbjct: 329 TAPHQTLVFAATKHHVEYLTNLLITAGYSVSHIYGSLDQAARTQQMDFFRRGVTNVLVVT 388
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHL 383
DVAARGIDIP+L+NV+N+DFP ++FVHRVGR ARAGR G A+SFV+ ++ YLLDL L
Sbjct: 389 DVAARGIDIPVLENVVNYDFPQGARVFVHRVGRTARAGRQGWAWSFVSPVELPYLLDLQL 448
Query: 384 FLSKPIR--AAPSEEEVLLDMDGVMSKIDQAIANGETIY------GRFPQTVIDLVSDRV 435
FL +PI+ A SEE+ GE++Y G F + +D + +
Sbjct: 449 FLGRPIKSEATASEEQ----------------GKGESLYTESLMLGTFTREKMDEEVEYI 492
Query: 436 REIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPRE-------------GL 482
R + +++ L L+ +Y ++K S+ S +R KD+ ++ G
Sbjct: 493 RSLDEANHSLPVLRDVMRKGQGMYERSKGKASQASYKRAKDMMKKPGAWGLIGAGAEGGS 552
Query: 483 HPMFK----NVLEGGE-------------LMALAFSERLKAFRPKQTILE--AEGEAARS 523
HP+ + GG+ + +FRP +T LE G+ +
Sbjct: 553 HPVLRLKGIGAATGGQEDVKRREEQREAEEKRRLLLRTVNSFRPAETALEIGTRGKTGNA 612
Query: 524 KHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKSMEKEVEPEADSLMAKE-----IKE 578
++ +++ +V + + MA E + +
Sbjct: 613 ALMKDRRKALSKAVERAAMASTSASAIVEDDSDEEDGIEGGGEVEGLEMADEADIAAVFD 672
Query: 579 THGSKRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQ 638
T KRK ++DEE+++S + E G S+R + F + A DL D+ G+
Sbjct: 673 TTTKKRK-DGYRDEEFYMSHYQKDADTEKGYSLRDNATFA-EQARNATFDLTTDE--GVA 728
Query: 639 KQKQVYH---WDKRGKKYIKLNNGERVSASG-KVVKTESGAKVKAT-KTGIYKKWKERS 692
QK+ Y WDK+ KK++K G+ A K+V+TESG K+ AT ++G + +WK +S
Sbjct: 729 AQKRAYSQTTWDKKKKKFVK---GDGAGADNVKMVRTESGTKLPATYRSGRFDEWKAKS 784
>gi|344301065|gb|EGW31377.1| ATP-dependent RNA helicase DBP10 [Spathaspora passalidarum NRRL
Y-27907]
Length = 918
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 277/753 (36%), Positives = 409/753 (54%), Gaps = 102/753 (13%)
Query: 18 KKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77
KK+K+G F S LS + I +KG++ PTPIQRKT+PL++ DVV MARTGSGKTAAF
Sbjct: 97 KKAKAGSFASFGLSKFLLTNIAKKGFRQPTPIQRKTIPLVMENRDVVGMARTGSGKTAAF 156
Query: 78 LVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF 137
++P++++L GVRA+ILSP+R+LALQT K KE G T+L+ ++L+GGD++E F
Sbjct: 157 VLPLIEKLKVR-SASGVRAIILSPSRELALQTYKQVKEFGHGTNLQTTVLIGGDTLEEDF 215
Query: 138 EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS 197
++ PDII+ TPGR +H E+ D L +++Y+VFDEAD LF MGFA QL+++L L
Sbjct: 216 SKMVSKPDIIVCTPGRFLHLKVEM-DYDLSTIQYIVFDEADRLFEMGFAIQLNELLASLP 274
Query: 198 ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLY 257
NRQ+LLFSATLP +L +FAKAGL +P LVRLD +TKIS L++A+FT ++ E+ A LLY
Sbjct: 275 PNRQSLLFSATLPRSLVDFAKAGLTNPVLVRLDAETKISDQLQMAYFTTKKNEREANLLY 334
Query: 258 MIRE---------------------HISSDQQ---------------------------- 268
+++E + SD++
Sbjct: 335 ILQEVIKLPLGSPEQIKKLKDMDKRQVESDEENEEDGKKKKYKFKKERMPAANQLPSEFS 394
Query: 269 TLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAAR 328
T++FV TKHHVE++ + R+ G S YG +DQ ARK + +FR T ++VTDVAAR
Sbjct: 395 TIVFVPTKHHVEYVTRMLRDAGYLVSYIYGTLDQHARKNQLYQFRIGLTHIMVVTDVAAR 454
Query: 329 GIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKP 388
GIDIP+L NVIN+ P KIF+HRVGR ARAG G A+S V +++ YLLDL LFL K
Sbjct: 455 GIDIPVLANVINFTLPGSSKIFIHRVGRTARAGNKGWAYSIVNEKELPYLLDLELFLGKK 514
Query: 389 IRAAPSEE---EVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADL 445
I E EVL G + + G P+ ++ + ++ + +L
Sbjct: 515 ILLTSMHETKCEVLKRKQGDAYVPPKVNYTERLVLGSIPRLDLEGCQELYENLLRNDYEL 574
Query: 446 NSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREG----LHPMFKNVLEGGELMALAFS 501
L+ +LY +T+ S ES++R K++ G H +F LE + LA
Sbjct: 575 KVLRDVAAKGEKLYHRTRQAASPESLKRSKEIMETGSWDEQHVLFGPNLEKQKQDFLA-- 632
Query: 502 ERLKAFRPKQTILE------AEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQR 555
+L+ K+T+ E + E + + + Q + ++ + E L+ ++R
Sbjct: 633 -KLQNRNVKETVFEFNKKGNDKDENSLVEFMHRRRRQIAPIQRRAKERRE----LLQKER 687
Query: 556 S---SKSMEKEVEPE-------ADSLMAKEIKETHGS-KRKAKTFKDEEYFISSVPTNHH 604
+ + +E E+ E AD +++ E K KT++D +F+S H+
Sbjct: 688 NAGLTHGIEDEILHEEGETGYNADEQELEQVFEDADKISSKKKTYRDPNFFLS-----HY 742
Query: 605 MEAGLSVRSDQGFGL-----NRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNG 659
A SV DQ + N +AA DL DD +QK KQ WDK+ KY+
Sbjct: 743 APA--SVIQDQQLSISSSFANDAQAATFDLDNDDK--IQKNKQTMAWDKKKGKYVNSK-- 796
Query: 660 ERVSASGKVVKTESGAKVKAT-KTGIYKKWKER 691
S K + ESG K+ AT ++G + +WK++
Sbjct: 797 ---STDVKYIIGESGQKIPATFRSGKFDEWKKK 826
>gi|410730255|ref|XP_003671307.2| hypothetical protein NDAI_0G02870 [Naumovozyma dairenensis CBS 421]
gi|401780125|emb|CCD26064.2| hypothetical protein NDAI_0G02870 [Naumovozyma dairenensis CBS 421]
Length = 991
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 288/814 (35%), Positives = 426/814 (52%), Gaps = 106/814 (13%)
Query: 16 QKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTA 75
+K K K G F S LS + I ++G++ PTPIQRKT+PLIL D+V MARTGSGKTA
Sbjct: 123 EKSKHKKGSFPSFGLSKIIVTNITKRGFRQPTPIQRKTIPLILQNRDIVGMARTGSGKTA 182
Query: 76 AFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMES 135
AF++PM++++ H + G RA+ILSP+R+LA+QT KE + T LR LL GGDS+E
Sbjct: 183 AFILPMIRKIKTHSSKIGARAVILSPSRELAMQTHNVFKEFSKGTQLRSVLLTGGDSLED 242
Query: 136 QFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQ 195
QF + NPD+IIATPGR +H E+ + LKS+EY VFDEAD LF MGF +QL+++L
Sbjct: 243 QFGMMMNNPDVIIATPGRFLHLKVEMS-LDLKSIEYAVFDEADRLFEMGFQDQLNELLAS 301
Query: 196 LSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAAL 255
L NRQTLLFSATLPS+L +FAKAGL +P LVRLD ++KIS +L++ F + + +E+ A L
Sbjct: 302 LPSNRQTLLFSATLPSSLVDFAKAGLTNPVLVRLDAESKISENLEMLFLSTKNDEREANL 361
Query: 256 LYMIRE-----------------------------------------------------H 262
LY++++
Sbjct: 362 LYLLQDVIKIPLATKEQQRKFNDQNKKDNESDSDADDNNNNNKNKKKRKFKKERLPPANQ 421
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
+ S++ T++FV T+HHVE+++ L ++ G S YG +DQ ARK + FR T L+V
Sbjct: 422 LPSEKATILFVPTRHHVEYISQLLKDSGYLISYIYGTLDQHARKRQLYNFRTGLTSILVV 481
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
TDVAARG+DIP+L NVIN+ P KIF+HRVGR ARAG G A+S V+ ++ YLLDL
Sbjct: 482 TDVAARGVDIPMLANVINFSLPASSKIFIHRVGRTARAGNRGWAYSIVSESELPYLLDLE 541
Query: 383 LFLSKPIRAAPSEEEVLLDM--------DGVMSKIDQAIANGE-TIYGRFPQTVIDLVSD 433
LFL K I P + + M + S ++ IA + I G P+ ++ + D
Sbjct: 542 LFLGKKIMLTPMYDSLCEIMKNKWIAEGNDESSFVNPKIAYTDRLILGSAPRLEVEGLGD 601
Query: 434 RVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVLEGG 493
+ ++ ++ +L ++ A +LY +T+ S ES++R K++ G +NVL G
Sbjct: 602 LYKNMMQNNFELKLIKDVAMKAEKLYFRTRTSASPESLKRSKEIIASGWDE--QNVLFGK 659
Query: 494 --ELMALAFSERLKAFRPKQTILE--AEGEAARSKHLQGPSSQWVDVMKKKRA-----VH 544
E L F +L+ R K+T+ E + S ++ Q + +K R
Sbjct: 660 NQEKEKLDFLAKLQNRRNKETVFEFSRNPDDEMSVFMKRRRRQLAPIQRKARERKELLQM 719
Query: 545 EKIINLVHQQRS--------------SKSMEKEVEPEADSLMAKEIKETHGSKRKAKTFK 590
EK+ L H S+ K+ +AD L+A + ++ K+ K+FK
Sbjct: 720 EKMAGLTHSVEDEILKGDDNEAGYSVSEDTLKQQFQDADELLADQENKSKKDKKSKKSFK 779
Query: 591 DEEYFISSVPTNHHMEAGLSVRSDQ-----GFGLNRLEAAVLDLVADDSGGLQKQKQVYH 645
D +F+S H+ AG ++ Q GF +N DL DD + KQ +
Sbjct: 780 DPNFFLS-----HYAPAG-DIQDKQLELTTGF-VNDAAKVAYDLNNDDKVQVHKQTAMVK 832
Query: 646 WDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNE 704
WDK+ KKY+ + + K + E G K+ A+ ++G + +W ++ K GA
Sbjct: 833 WDKKRKKYVNTQGLD----NKKYIIGEGGQKIAASFRSGKFDEWAKKRKMKPLKVGARET 888
Query: 705 GNAEETTSVPGGRHLGGNNRKFRGG-KNQQRSVP 737
+ P G RG K++Q P
Sbjct: 889 TIPSNILANPTNGSHGSQGNTIRGKFKHKQMKAP 922
>gi|342180685|emb|CCC90161.1| putative ATP-dependent DEAD/H RNA helicase [Trypanosoma congolense
IL3000]
Length = 842
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 263/754 (34%), Positives = 412/754 (54%), Gaps = 83/754 (11%)
Query: 15 KQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKT 74
+Q+KK + GGF++ L + ++ R GY VPTPIQRK +P ++ G DVVAMARTGSGKT
Sbjct: 17 QQQKKKRGGGFQTFGLDKPLLDSVLRLGYNVPTPIQRKAIPPMIQGNDVVAMARTGSGKT 76
Query: 75 AAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSME 134
AAFL+PML L H GVR L+LSPTR+L++Q L+F +LG++ DLR LVGG+S+E
Sbjct: 77 AAFLIPMLHMLKTHSKVVGVRGLVLSPTRELSMQILRFGIQLGKFLDLRFVALVGGNSLE 136
Query: 135 SQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILG 194
QFE LA NPDI++ATPGR++H + E + L V+ +V DEAD LF +G Q+ I+
Sbjct: 137 QQFEMLASNPDIVVATPGRILHIMEEAS-LQLSMVKCLVLDEADRLFELGLQPQIVAIMQ 195
Query: 195 QLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAA 254
++ E+ Q LFSAT+P+ LAEF AGL +P ++RLD + K+S LK + F +R +EK AA
Sbjct: 196 KVPESCQRALFSATMPTILAEFTNAGLHNPVVIRLDTEMKLSDKLKQSAFFVRNDEKIAA 255
Query: 255 LLYMIREHI----------SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDA 304
L+ +++ I S+++Q LIFV +K HV+ L + + S +G MDQ+
Sbjct: 256 LIVLLKRIIGIDASDRRSESAERQALIFVESKFHVDCLESIMEAYHISCSAVHGQMDQEG 315
Query: 305 RKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTG 364
R+ V F R T +IVTDVAARG+D+PLLDNV+N+ FP PK+FVHRVGR ARAGR+G
Sbjct: 316 RRNAVRAFSKRDTSVMIVTDVAARGLDLPLLDNVVNFSFPATPKLFVHRVGRVARAGRSG 375
Query: 365 TAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFP 424
+A+S +T ED + +DL FL +P++ ++L D + YGR P
Sbjct: 376 SAYSIITFEDFPHYVDLMTFLDRPLQCRKEPGDLLFTAD-------------DGCYGRMP 422
Query: 425 QTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESI---RRGK-DLPRE 480
+ + L D +R + +L ++ + NA + + +T+ + +SI R+G+
Sbjct: 423 EDALQLELDFLRRLASEDVELRAMMKVVDNAHKKFMRTRKRATHDSIQTARQGQYQFDST 482
Query: 481 GLHPMFKNVLEGGELMALAFSERLKAFRPKQTILE-AEGEA--------------ARSKH 525
LHP+F L+ ++ A LK F+ K+++LE GE +
Sbjct: 483 PLHPIFVERLDQKDVEADEARVALKRFKAKESLLEMVHGEKFLEIRKPVTVQELWKEQRQ 542
Query: 526 LQGPSSQWVDVM-----KKKRAVHEKIINLVHQQRSSKSMEKEVEPE------ADSLMAK 574
+ S ++ + M + + E + Q + ++ P A+SL+ K
Sbjct: 543 MDDVSDEYENGMTGSAGEGENDEAETFLPATRQLAAGGGTSMKINPTGKKLSLAESLLLK 602
Query: 575 EIKETHGSKRKAKTFKDEEYFISSVP----------TNHHMEAGLSVRS-----DQGFGL 619
+ + +++E I+ P ++ + AG +V S D+ F +
Sbjct: 603 AQERKKRGRESTDAKENDEDGITFFPPRGMYGPAAGSSATLGAGDAVFSTDKYRDREFFM 662
Query: 620 NRLEAAVLDLV------------ADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGK 667
+ ++ + +D V AD + Q+Q+QVY W K+ +Y+++N + A +
Sbjct: 663 DDVKRSTIDDVHYSVKDATFDIGADTAKDAQQQRQVYAWSKKKNRYVRMNVND-AKALLR 721
Query: 668 VVKTESGAKVK-ATKTGIYKKWKERSHKKVYLKG 700
VK E+G V +K Y KW ++S+ ++ G
Sbjct: 722 GVKNEAGKAVNFKSKLKAYSKWTKKSNIRIQDAG 755
>gi|67598709|ref|XP_666233.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54657185|gb|EAL36001.1| hypothetical protein Chro.30274, partial [Cryptosporidium hominis]
Length = 868
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 254/729 (34%), Positives = 404/729 (55%), Gaps = 71/729 (9%)
Query: 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPML 82
G F+S SP + +IK GY +PTPIQRK P IL+G DVVAMARTGSGKTA F++PM+
Sbjct: 4 GTFQSFGFSPKLLESIKIIGYSLPTPIQRKCFPSILAGRDVVAMARTGSGKTAGFVLPMI 63
Query: 83 QRLN-QHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
+RL H G+R ++LSPTR+LALQT + ++L T+L + L GG S++ QFE L+
Sbjct: 64 ERLGCSHSQIVGIRGVVLSPTRELALQTYRVVRKLACKTNLVVCALTGGSSLDRQFESLS 123
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
NPDI++ATPGRL HH+ E +SL +V+ ++ DEAD LF MG A Q+ KIL + +NRQ
Sbjct: 124 GNPDIVVATPGRLFHHIIEA-GLSLIAVKIIILDEADRLFEMGLASQIEKILESIPKNRQ 182
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
+L SAT+P+ALA F+K L +P ++++D D +S LKL F +R++EK A+LLY++R
Sbjct: 183 CVLVSATMPTALASFSKVMLNEPEVIQIDSDYILSETLKLTFLFVREDEKLASLLYLLRN 242
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
I S ++ +IF +TKHHV+++ + + S YG+MDQ+AR +H+S FR K+ L+
Sbjct: 243 TIPSHERAIIFCATKHHVDYIVKILESNNIIVSYIYGNMDQEARTMHLSTFRKNKSRALV 302
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
VTD+AARG+DIP++ VIN+DFP PK+FVHR GR ARAG+ G AFS +TS D+ Y +DL
Sbjct: 303 VTDIAARGVDIPMIKYVINFDFPLSPKLFVHRTGRTARAGQHGRAFSLITSRDLPYTIDL 362
Query: 382 HLFLSKPIRAAPSEEEVLLDMDGVMS--KIDQAIANGET--------------------- 418
LFL + S++ D + + +++ +I + +
Sbjct: 363 CLFLGLKMTTLTSKQTTDSSNDSLNTEKRVEASIRDDDIHEEGISFIKPASLNDFHVESR 422
Query: 419 -IYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDL 477
I FP +++ S + ++ ++++ +R+ +A+ LY KT+ SKES++R ++L
Sbjct: 423 LILASFPDLTLEIES--IERVLTENSEIERCRRSMESAYLLYLKTRTPSSKESLKRSREL 480
Query: 478 PRE---------GLHPMFK--------NVLEGGELMALA--FSERLKAFRPKQ------- 511
+ +HP N++ L ++ + LK FRP +
Sbjct: 481 LEKCGGASKILMSIHPDLNIDTNETNLNIVTLQNLGVISDPLLDHLKLFRPTENKTHNKY 540
Query: 512 -TILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKSMEKEVEPEADS 570
+ + G+ ++ + + + K +K S + E+ ++
Sbjct: 541 GCLNQVTGKMVLKSSIKMKKIKDMGNVVKSILSEDKFAIGTSISESQNGISDEISSN-NN 599
Query: 571 LMAKEIKETHGSKRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLV 630
+ + + K+ K+ E+F +P + E V G +LE++ D+
Sbjct: 600 ISQTFVNKKRKPKKPCNRVKESEHFF--IPYKNSEE---EVSRSTGL---QLESSSFDIN 651
Query: 631 ADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVK-TESGAKVKA--TKTGIYKK 687
D+ G +++QK V W+ + K+Y ++ +S + K ESG KVK TG YKK
Sbjct: 652 PDEEGEMKRQKCVRKWNSKRKRYELID----ISKQNSIKKFNESGIKVKGELKCTGQYKK 707
Query: 688 WKERSHKKV 696
WK ++ K+
Sbjct: 708 WKANTNLKI 716
>gi|118777945|ref|XP_308366.3| AGAP007511-PA [Anopheles gambiae str. PEST]
gi|116132145|gb|EAA04660.3| AGAP007511-PA [Anopheles gambiae str. PEST]
Length = 816
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 225/487 (46%), Positives = 312/487 (64%), Gaps = 27/487 (5%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+++ LS V + I + GYK+PTPIQRKT+P+IL G DVVAMA+TGSGKT FL+PM +R
Sbjct: 40 FQAMGLSAPVLKGILKMGYKIPTPIQRKTIPIILDGRDVVAMAKTGSGKTGCFLIPMFER 99
Query: 85 LNQHVPQ--GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
L Q + GG RALILSPTR+LA+QT KF K+LGR+ DL+ L++GGDSM+SQF +
Sbjct: 100 LKQREAKAGGGARALILSPTRELAIQTYKFIKQLGRFMDLKAILVLGGDSMDSQFAAVHT 159
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
PD+I+ATPGR +H E+ D+ L SV+Y VFDEAD LF MGF EQL + + +L E+RQ
Sbjct: 160 LPDVIVATPGRFLHLCVEM-DLKLNSVQYCVFDEADRLFEMGFGEQLTETIKRLPESRQM 218
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
+LFSATLP + +FA AGL P L+RLDV++KI L L + R E++A LL ++RE
Sbjct: 219 VLFSATLPKLMVDFATAGLCQPVLIRLDVESKIPDTLDLKYIYCRPAERYATLLVLLREV 278
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
I S QT+IF T+HHVE ++++ + G+ S Y +D ARKI+ ++F RK L+V
Sbjct: 279 IPSTAQTVIFAGTQHHVELISLMLTKAGVPNSHVYSGLDASARKINTAKFTHRKVNVLVV 338
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
TD+AARG+DIP LD VIN FP KPK+F+HRVGR ARAGR+G A++ +++D+A+L+DLH
Sbjct: 339 TDIAARGLDIPTLDFVINLHFPGKPKLFIHRVGRCARAGRSGMAYTIFSNDDVAHLIDLH 398
Query: 383 LFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSS 442
+FL++P+ A + ++ D +T LV + VR +
Sbjct: 399 MFLNRPLDVADRKTMGIVPPD-------------------MQETEHLLVQEYVRHV---- 435
Query: 443 ADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVLEGGELMALAFSE 502
DL + R NA++ Y T+P S S +R K + L + E E A A +
Sbjct: 436 -DLATAYRVSNNAYKQYIVTRPAASAASNKRAKQFKIDELGVLEDFQQEKAEPEAGARGK 494
Query: 503 RLKAFRP 509
R K +P
Sbjct: 495 RWKKGKP 501
>gi|207346902|gb|EDZ73254.1| YDL031Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 846
Score = 427 bits (1098), Expect = e-116, Method: Compositional matrix adjust.
Identities = 297/799 (37%), Positives = 432/799 (54%), Gaps = 123/799 (15%)
Query: 38 IKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRAL 97
IKRKG++ PTPIQRKT+PLIL D+V MARTGSGKTAAF++PM+++L H + G RA+
Sbjct: 3 IKRKGFRQPTPIQRKTIPLILQSRDIVGMARTGSGKTAAFILPMVEKLKSHSGKIGARAV 62
Query: 98 ILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHH 157
ILSP+R+LA+QT K+ R T+LR LL GGDS+E QF + NPD+IIATPGR +H
Sbjct: 63 ILSPSRELAMQTFNVFKDFARGTELRSVLLTGGDSLEEQFGMMMTNPDVIIATPGRFLHL 122
Query: 158 LSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFA 217
E+ ++ LKSVEYVVFDEAD LF MGF EQL+++L L RQTLLFSATLP++L +F
Sbjct: 123 KVEM-NLDLKSVEYVVFDEADRLFEMGFQEQLNELLASLPTTRQTLLFSATLPNSLVDFV 181
Query: 218 KAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS------------- 264
KAGL +P LVRLD +TK+S +L++ F + + ++ A LLY+++E I
Sbjct: 182 KAGLVNPVLVRLDAETKVSENLEMLFLSSKNADREANLLYILQEIIKIPLATSEQLQKLQ 241
Query: 265 ----------------------------------------SDQQTLIFVSTKHHVEFLNV 284
S++ T++FV T+HHVE+++
Sbjct: 242 NSNNEADSDSDDENDRQKKRRNFKKEKFRKQKMPAANELPSEKATILFVPTRHHVEYISQ 301
Query: 285 LFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFP 344
L R+ G S YG +DQ ARK + FRA T L+VTDVAARG+DIP+L NVIN+ P
Sbjct: 302 LLRDCGYLISYIYGTLDQHARKRQLYNFRAGLTSILVVTDVAARGVDIPMLANVINYTLP 361
Query: 345 PKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDG 404
KIFVHRVGR ARAG G A+S V ++ YLLDL LFL + I P + ++
Sbjct: 362 GSSKIFVHRVGRTARAGNKGWAYSIVAENELPYLLDLELFLGEKILLTPMYDSLV----D 417
Query: 405 VMSK--IDQAIANGE-----------TIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRT 451
VM K ID+ + + G P+ ++ + D + ++ S+ DL ++T
Sbjct: 418 VMKKRWIDEGKPEYQFQPPKLSYTKRLVLGSCPRLDVEGLGDLYKNLMSSNFDLQLAKKT 477
Query: 452 CTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVLEGGELMALAFSERLKAFRPKQ 511
A +LY +T+ S ES++R K++ G + E L F +L+ R K+
Sbjct: 478 AMKAEKLYYRTRTSASPESLKRSKEIISSGWDAQNAFFGKNEEKEKLDFLAKLQNRRNKE 537
Query: 512 TILE----AEGEAA-----RSKHL---QGPSSQWVDVMKKKR------AVHEKIINLVHQ 553
T+ E + E A R K L Q +++ ++++K+R ++ ++I+
Sbjct: 538 TVFEFTRNPDDEMAVFMKRRRKQLAPIQRKATERRELLEKERMAGLSHSIEDEILKGDDG 597
Query: 554 QRS---SKSMEKEVEPEADSLMAKEIKETHGSKRKAKTFKDEEYFISSVPTNHHMEAG-- 608
+ S+ KE E +AD L+ + E + K+K K+FKD +F+S H+ AG
Sbjct: 598 ETGYTVSEDALKEFE-DADQLLEAQENE-NKKKKKPKSFKDPTFFLS-----HYAPAGEI 650
Query: 609 --LSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASG 666
++ GF N A DL +DD + KQ WDK+ KKY+ N + + +
Sbjct: 651 QDKQLQITNGFA-NDAAQAAYDLNSDDKVQVHKQTATVKWDKKRKKYV---NTQGID-NK 705
Query: 667 KVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNAEETTSVPGG------RHL 719
K + ESG K+ A+ ++G + W + + K LK S E TS+P +
Sbjct: 706 KYIIGESGQKIAASFRSGRFDDWSKARNLKP-LKVGSRE------TSIPSNLLEDPSQGP 758
Query: 720 GGNNRKFRGG-KNQQRSVP 737
N R RG K++Q P
Sbjct: 759 AANGRTVRGKFKHKQMKAP 777
>gi|354548000|emb|CCE44735.1| hypothetical protein CPAR2_405390 [Candida parapsilosis]
Length = 914
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 276/762 (36%), Positives = 414/762 (54%), Gaps = 107/762 (14%)
Query: 18 KKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77
KK+K+G F S S + I +KGYK PTPIQRK++PLI+ DVV MARTGSGKTAAF
Sbjct: 87 KKAKAGSFASFGFSKFLLSNISKKGYKQPTPIQRKSIPLIIDNRDVVGMARTGSGKTAAF 146
Query: 78 LVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF 137
++P++++L P G VRA+ILSP+R+LALQT K KE R TDL+ +L+GGDS+E F
Sbjct: 147 VLPLIEKLKSRRPTG-VRAVILSPSRELALQTYKQVKEFSRGTDLQSIVLIGGDSLEEDF 205
Query: 138 EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS 197
++ PDII+ TPGR +H E++ L +VEY+VFDEAD LF MGFAEQL+++L L
Sbjct: 206 GKMVTKPDIIVCTPGRFLHLKVEMQ-YDLSTVEYIVFDEADRLFEMGFAEQLNELLLALP 264
Query: 198 ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLY 257
NRQ+LLFSATLP L +FAKAGL +P LVRLD ++KIS +L++A+FT + E+ A LLY
Sbjct: 265 SNRQSLLFSATLPRTLVDFAKAGLTNPVLVRLDAESKISENLQMAYFTTKINEREANLLY 324
Query: 258 MIRE-----------------------------------------------------HIS 264
+++E +
Sbjct: 325 ILQEVIKMPLGAPEEIKKLVAMDKREAEYNDDDDDADVDAGKKKKYKFKKERMPSANQLP 384
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
S++ T++FV TKHHVE++ L R+ G S YG +DQ ARK + +F+ T L+VTD
Sbjct: 385 SEKSTIVFVPTKHHVEYITKLLRDAGYLVSYIYGTLDQHARKNQLYQFKIGLTKILVVTD 444
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
VAARGIDIP+L NV+N+ P KIF+HRVGR ARAG G A+S V +++ YLLDL LF
Sbjct: 445 VAARGIDIPVLANVVNFTLPGSSKIFIHRVGRTARAGNKGWAYSIVNEKELPYLLDLELF 504
Query: 385 LSKPIRAAPSEE---EVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDS 441
L K + E E+L G + + G P+ ++ + ++ +
Sbjct: 505 LGKKVLLTSMHEAKCEMLQKTQGDSYIPPRVNYTERLVVGSIPRVDLETFQELYENLLKN 564
Query: 442 SADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDL----PREGLHPMFKNVLEGGELMA 497
+ ++ L+ T +LY +T+ S+ES++R K++ + H +F LE +
Sbjct: 565 NYEIKVLKDVATKGEKLYHRTRQAASQESLKRSKEILETNSWDDQHLLFGENLEKKKEDF 624
Query: 498 LAFSERLKAFRPKQTILEAEGEAAR-----SKHLQGPSSQWVDVMKKKRAVHEKIINLVH 552
LA +L+ K+T+ E + + + ++ + Q + +K + E L+
Sbjct: 625 LA---KLQNRNVKETVFEIKKKGVKENDSLAEFMHKRRRQIAPIQRKAQERRE----LLQ 677
Query: 553 QQRSS---KSMEKEVEPEAD-------SLMAKEIKETHGSKR---KAKTFKDEEYFISSV 599
++R + +E+E+ D + +E++ T K K+ +D ++FIS
Sbjct: 678 KERLAGLRHGIEEELLKTEDENSGYVQEVGDEELQNTFEDGEQLSKKKSSRDPQHFIS-- 735
Query: 600 PTNHHMEAGLSVRSDQGFGL-----NRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYI 654
H+ A S+ DQ + N +AA DL DD LQ KQV WDK+ KY
Sbjct: 736 ---HYAPA--SIIQDQQLSIASSFANDAQAAAFDLGNDDK--LQVNKQVMKWDKKKGKY- 787
Query: 655 KLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKK 695
N + S K + +E+G ++ A+ ++G + WK++ + K
Sbjct: 788 --TNSQ--STDKKYIISENGTRIPASFRSGKFDDWKKQRNLK 825
>gi|260827419|ref|XP_002608662.1| hypothetical protein BRAFLDRAFT_211958 [Branchiostoma floridae]
gi|229294014|gb|EEN64672.1| hypothetical protein BRAFLDRAFT_211958 [Branchiostoma floridae]
Length = 757
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 284/786 (36%), Positives = 417/786 (53%), Gaps = 109/786 (13%)
Query: 15 KQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKT 74
+ KKK KSGGF+S+ LS +F+ + +KGYKVPTPIQRK +P+I+ G DVVAMARTGSGKT
Sbjct: 25 QNKKKKKSGGFQSMGLSHGIFKGVMKKGYKVPTPIQRKCIPIIMDGKDVVAMARTGSGKT 84
Query: 75 AAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSME 134
AAFL+PM ++L H G RALIL+PTR+LALQT+KFTKELGR+T LR +L++GGDSME
Sbjct: 85 AAFLIPMFEKLRAH-STSGARALILAPTRELALQTMKFTKELGRFTGLRAALILGGDSME 143
Query: 135 SQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILG 194
QF L +NPDI I V +L S EY + F +
Sbjct: 144 DQFAALHENPDICIFL----------VIVCTLVSFEYKKHTIDMYVSPNTFVLSPRPVSS 193
Query: 195 QLSENRQTLLFSATLPS--ALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
++ + L+ A L L FA +P + T P + K
Sbjct: 194 AITASLSPLVAPAALEGIFCLVYFALVIFLEP----VSAKTCKPPPATYIICSFSTWSK- 248
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
IR S+D L+ +T +++F GL S Y +DQ ARKI++++F
Sbjct: 249 ------IR---STDGFVLVHCNTLKYIDF-----HTTGLSCSAVYSSLDQTARKINIAKF 294
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
+KT ++VTD+AARGIDIP+LDNVIN++FP KPK+FVHRVGR ARAGR+GTA+S V
Sbjct: 295 THKKTKVMLVTDIAARGIDIPMLDNVINYNFPCKPKLFVHRVGRVARAGRSGTAYSLVAP 354
Query: 373 EDMAYLLDLHLFLSKPIRAA----PSEEEVLL-DMDGVMSKIDQAIANGETIYGRFPQTV 427
++ +LDLHLFL + ++ A SEE + + D DG +YG+ PQ++
Sbjct: 355 DETPLMLDLHLFLGRAVKVAGKDKSSEERICVPDWDG--------------LYGKVPQSI 400
Query: 428 IDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRR--GKDLPREGLHPM 485
ID +R +++ +L +L+R + Y K++ PS ES++R G D + G HP+
Sbjct: 401 IDDEDANIRVYQENNLELGNLKRVSEWGYSAYLKSRSAPSHESVKRMKGMDTAQMGFHPL 460
Query: 486 FKNVLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHE 545
N++ E F + ++ ++P TI E S + P+ VMK KR+VH+
Sbjct: 461 LGNMIHEVEDKLAEFVDGVRNYKPNSTIFEV------SASNKNPA---FSVMKSKRSVHQ 511
Query: 546 KIINLVHQQRSSK---------------SMEKEVEPEA-----DSLMAKEIKETHG---- 581
+I + Q+SSK + E+++E +++A K H
Sbjct: 512 GVIRRLQDQKSSKQDIGGAAAHTSNTEMTSEQDIEVRCILDTFSTVVAPGHKRKHAEDDG 571
Query: 582 --SKRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQK 639
K++ + F+DEE+F+ P +HH E GL + S F + + A+LDL AD++ ++
Sbjct: 572 NVGKKQKQGFRDEEHFLPYRPQDHHSEKGLGLES--SFQVQASD-AMLDLAADEAEKAKQ 628
Query: 640 QKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYL 698
QK WD++ KK++K E + K +KTESG V A+ KT YK+W ++S +
Sbjct: 629 QKNQLKWDRKKKKFVK----EGIDLKKKKIKTESGTWVSASFKTDSYKRWLQQSKMREQE 684
Query: 699 KGASNEGNAEETTSVPGGRHLGGNNRKFRGGKNQQRSVPNAHVCSEIKDLDQVRKERQKK 758
+ + GG+ G + +GG + R SE+K DQ+ K R KK
Sbjct: 685 REEEENEQDQF-----GGKRKDGQQPRNQGGARRPR--------SELKSTDQILKSRIKK 731
Query: 759 ADRIAF 764
AF
Sbjct: 732 EREQAF 737
>gi|242133498|gb|ACS87799.1| putative ATP-dependent RNA helicase [Crithidia sp. ATCC 30255]
Length = 885
Score = 420 bits (1079), Expect = e-114, Method: Compositional matrix adjust.
Identities = 220/508 (43%), Positives = 319/508 (62%), Gaps = 24/508 (4%)
Query: 18 KKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77
KK K GGF++ L + AI ++G+ VPTPIQRK +P +L G DVVAMARTGSGKTAAF
Sbjct: 85 KKKKGGGFQTFGLDKPLLDAILKQGFTVPTPIQRKAIPPMLQGNDVVAMARTGSGKTAAF 144
Query: 78 LVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF 137
L+PML L H G+R L+LSPTR+L+LQ L L ++ DLR + +VGGDS++ QF
Sbjct: 145 LIPMLYHLKAHSKMVGIRGLVLSPTRELSLQILHNGFALNKFMDLRFAAVVGGDSLDQQF 204
Query: 138 EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS 197
E LA NPD+++ATPGRL+H + E + L +V +V DEAD LF +G Q+ I+ ++
Sbjct: 205 ELLASNPDLVVATPGRLLHIMEEAS-LHLTAVRCLVLDEADRLFELGLQPQIGAIMQKIP 263
Query: 198 ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLY 257
E+ Q LFSAT+PS LAEF AGL +P ++RLD + K+S LK + F +R +EK AAL+
Sbjct: 264 ESCQRALFSATMPSVLAEFTSAGLHNPVIIRLDAEMKLSDQLKQSAFLVRNDEKIAALIV 323
Query: 258 MIR------EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSR 311
+++ E ++ Q LIFV +K HVEFL ++ + S +G MDQ+AR++ V
Sbjct: 324 LLKRVMHVGEAAMNNAQALIFVESKFHVEFLQMVLTAYDISASGVHGQMDQEARRLAVRS 383
Query: 312 FRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVT 371
F R+T ++VTDVAARG+D+PLLDNV+N+ FP PK+FVHRVGR ARAGR+GTA+S +T
Sbjct: 384 FAKRETSVMVVTDVAARGLDLPLLDNVVNFSFPFNPKLFVHRVGRVARAGRSGTAYSIMT 443
Query: 372 SEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLV 431
ED Y +DL F+ +P+++AP+ ++L D + YGR P+ I L
Sbjct: 444 FEDFPYYVDLMQFIGRPLQSAPTPGDLLFTPD-------------DGCYGRLPEEDIQLE 490
Query: 432 SDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKD----LPREGLHPMFK 487
D ++ + + ++ ++ + NA + +++TK P+ E I+ + + LHP+
Sbjct: 491 LDFLKRLHANDVEVRNMAKVVENAHKKFNRTKKKPTHEGIQEARKPQYAFDKTPLHPLLL 550
Query: 488 NVLEGGELMALAFSERLKAFRPKQTILE 515
L + A LK F+PK+ LE
Sbjct: 551 ERLGSTRVRADEARFDLKRFKPKELFLE 578
Score = 44.3 bits (103), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 87/194 (44%), Gaps = 31/194 (15%)
Query: 588 TFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWD 647
++DE +F++ + A SV+ A +D+ A+ + Q+QV+ W
Sbjct: 693 NYRDENFFMNIERRDTLDNAHYSVKD-----------ATMDITAETAEEAALQRQVFAWS 741
Query: 648 KRGKKYIKLNNGERVSASGKVVKTESGAKVK-ATKTGIYKKWKERSHKKVYLKGASNE-- 704
K+ +Y+K++ + A K VK ESG + +K Y KW ++S+ ++ G +
Sbjct: 742 KKKNRYVKMHVND-AKALLKGVKNESGKAINYKSKLEAYSKWMKKSNMRIQDVGEEEDLV 800
Query: 705 -----GNAEETTSVPGGRHLG----------GNNRKFRGGKNQQRSVPNAHVCSEIKDLD 749
AE++ G G +K R G+ Q+R + HV S +++
Sbjct: 801 PLKRAKAAEQSMLSKDGDEDGDADMVDISNPNQGKKLRIGRKQKRLPKDGHVRS-FEEMA 859
Query: 750 QVRKERQKKADRIA 763
++++ +K+ R+A
Sbjct: 860 VMKRKAEKEKSRLA 873
>gi|340053299|emb|CCC47587.1| putative ATP-dependent RNA helicase [Trypanosoma vivax Y486]
Length = 857
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 222/516 (43%), Positives = 324/516 (62%), Gaps = 28/516 (5%)
Query: 14 EKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGK 73
E+Q+KK + GGF++L L + I R GY VPTPIQRK + ++ G DVVAMARTGSGK
Sbjct: 15 EEQQKKKRGGGFQTLGLEKPLLDGILRLGYNVPTPIQRKAIHPMMQGNDVVAMARTGSGK 74
Query: 74 TAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSM 133
TAAFL+PML L H GVR LILSPTR+L++Q L+F +LG++ DLR LVGG+S+
Sbjct: 75 TAAFLIPMLHLLKSHSKVVGVRGLILSPTRELSMQILRFGIKLGKFLDLRFVALVGGNSL 134
Query: 134 ESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKIL 193
E QFE LA NPDI++ATPGR++H + E + L V+ +V DEAD LF +G Q+ I+
Sbjct: 135 EQQFEMLASNPDIVVATPGRILHIMEEAS-LQLSMVKLLVLDEADRLFELGLQPQIIAIM 193
Query: 194 GQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHA 253
+L E+ Q LFSAT+PS LAEF AGL +P ++RLD + K+S L + F +R +EK A
Sbjct: 194 QKLPESCQRALFSATMPSVLAEFTSAGLHNPVVIRLDAEMKLSDKLMQSAFLVRNDEKVA 253
Query: 254 ALLYMIREHI----------SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQD 303
AL+ ++++ I +++QQ LIFV +K HV++L + + S +G MDQ+
Sbjct: 254 ALIVLLKQVIGIGSSYKKESTTEQQALIFVESKFHVDYLQAIMEAYHISCSAVHGQMDQE 313
Query: 304 ARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRT 363
AR+ V F R+ +IVTDVAARG+D+PLLDNVIN+ F P PK++VHRVGR ARAGR+
Sbjct: 314 ARRNAVRDFSKRQASVMIVTDVAARGLDLPLLDNVINFSFTPTPKLYVHRVGRVARAGRS 373
Query: 364 GTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRF 423
G+A+S +T ED Y +DL FL +P+++ ++L D + YGR
Sbjct: 374 GSAYSILTFEDFPYYVDLMAFLDRPLQSRREAGDLLFTAD-------------DGCYGRI 420
Query: 424 PQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESI----RRGKDLPR 479
P+ +I L D +R + + ++ ++++ NA + +++TK + + I R+
Sbjct: 421 PEDMIQLELDFLRRLSLNDVEVRNMEKVVDNAHKKFARTKKKATHDGIQIARRQEFQFDN 480
Query: 480 EGLHPMFKNVLEGGELMALAFSERLKAFRPKQTILE 515
LHP+F + L ++ A LK F+ K+++LE
Sbjct: 481 TPLHPIFVDRLGRKDIEADEARFGLKRFKAKESLLE 516
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 13/112 (11%)
Query: 586 AKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYH 645
A ++D EYF++ V + A SV+ A D+ AD+ Q+Q+QV+
Sbjct: 663 ASRYRDREYFMADVKRDTIENAHYSVKD-----------AAFDMSADNVEDAQQQRQVFA 711
Query: 646 WDKRGKKYIKLNNGERVSASGKVVKTESGAKVK-ATKTGIYKKWKERSHKKV 696
W K+ +YI++N + A + VK E+G V +K Y +W ++S+ ++
Sbjct: 712 WSKKKNRYIRMNVND-AKALLRGVKNEAGKAVNFKSKLKTYSRWMKKSNLRI 762
>gi|405118285|gb|AFR93059.1| DEAD box RNA helicase [Cryptococcus neoformans var. grubii H99]
Length = 803
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 274/734 (37%), Positives = 404/734 (55%), Gaps = 106/734 (14%)
Query: 15 KQKKKSKSGGFESL-----NLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGA--DVVAMA 67
K+K G + +L ++ P++ R++ + +K PTPIQR +P LS D++ MA
Sbjct: 19 KEKTSGPGGQWRALTHTRTDVGPDLIRSLLMRKFKSPTPIQRAAIPPALSTPPRDILGMA 78
Query: 68 RTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGR--------- 118
RTGSGKT A+L+P+LQ+ G RALIL P+R+LA+Q K+L R
Sbjct: 79 RTGSGKTLAYLIPLLQKTGSTHHGQGPRALILCPSRELAVQIYTVGKDLARGMNKGKGKE 138
Query: 119 --------------YTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDM 164
LR ++++GG+ M++QFE+++ NPDI+IATPGR +H + E+ M
Sbjct: 139 KNKAEGEEDEEGKGKEGLRWAVIIGGEGMDAQFEKMSSNPDIVIATPGRFLHLIVEMH-M 197
Query: 165 SLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDP 224
L+ ++ V++DEAD LF MGF QL +IL +L RQ LLFSATLPS++AEFAKAGL +P
Sbjct: 198 DLRHLQTVIYDEADRLFEMGFDVQLQEILHRLPSTRQNLLFSATLPSSVAEFAKAGLVNP 257
Query: 225 HLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI-----------SSDQQTLIFV 273
LVRLD + KISPDL L FF+++ EK A+LL ++RE I SS Q ++FV
Sbjct: 258 LLVRLDTEQKISPDLALKFFSVKPGEKEASLLVLLREIIGKPNQPQPADPSSAPQAIVFV 317
Query: 274 STKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIP 333
+TKHHV+++ L R G S+ Y +DQ AR+ ++ FR ++ L+VTDVAARG+DIP
Sbjct: 318 ATKHHVDYVAELLRTTGYRTSLIYSSLDQVARQQQLAGFRNHQSDVLVVTDVAARGLDIP 377
Query: 334 LLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAP 393
++D+VIN+DFP P+IFVHRVGR ARAGR GTA+S + ED YL DLH FL P
Sbjct: 378 IMDHVINYDFPAGPRIFVHRVGRTARAGRKGTAYSLIVKEDFPYLCDLHTFLGTARMGEP 437
Query: 394 SEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCT 453
+ L I+Q N E ++ +T + + +R ++ + RT
Sbjct: 438 AYALRSL-------PIEQLSENVEYVFHNLDETAPHITA--LRNVMRKGQGMFERSRTKA 488
Query: 454 NAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVLEG------GELMALAFSERLKAF 507
N Y + K L S S + PR + MF++ +E L+A ++ AF
Sbjct: 489 NPTS-YRQAKSLASALS----NNPPR--IDDMFEDAMEDEVNEEKARLLA-----KVAAF 536
Query: 508 RPKQTILEA---EGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKSMEKEV 564
P +T+ E E E+A V + K+++ V E+ Q+R SK+ E
Sbjct: 537 TPSETVFEVGKRESESA------------VIMKKRRKTVDER------QKRVSKA---EA 575
Query: 565 EPEADSLMAK-EIKETHGSKRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLE 623
E S M K +KE + K FKD +++ E G S++S G+ L
Sbjct: 576 EKSTTSGMEKTPVKELPAPQLPIKDFKDPSFYLEHTQRGAEAEKGYSLKS----GVESLS 631
Query: 624 AAVLDLVADDSGGLQKQKQV-YHWDKRGKKYIKLNNGERVSASG-KVVKTESGAKVKAT- 680
A+ D+ AD+ G + QK WD++ K+IK N S G K++++ESGA + A+
Sbjct: 632 GAITDMTADEGTGPKAQKASQLSWDRKKHKFIKKNG----STDGEKMIRSESGALLPASY 687
Query: 681 KTGIYKKWK-ERSH 693
+G Y++WK +R H
Sbjct: 688 SSGKYQEWKLKRRH 701
>gi|340506877|gb|EGR32929.1| hypothetical protein IMG5_066580 [Ichthyophthirius multifiliis]
Length = 847
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 210/502 (41%), Positives = 323/502 (64%), Gaps = 20/502 (3%)
Query: 18 KKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77
K+ K GGFES+NL V++AIK +G+ VPTPIQRK +PLIL G D+VA +RTGSGKTAAF
Sbjct: 6 KRKKGGGFESMNLVYPVYKAIKARGFNVPTPIQRKAIPLILEGRDIVACSRTGSGKTAAF 65
Query: 78 LVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF 137
++P++ +L H G RALI+ PTR+LALQ K ++TDL SLLVGG ++E QF
Sbjct: 66 VIPLVNKLQTHSRTVGARALIVLPTRELALQITSVLKSFIKFTDLTYSLLVGGHNLEGQF 125
Query: 138 EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS 197
E LA NPDI+I TPGRL + E ++L VE+++FDE D LF MGFA+Q+ IL ++S
Sbjct: 126 ESLAGNPDILIVTPGRLSQLIDET-GLTLNKVEFLIFDECDYLFEMGFADQMKTILKKVS 184
Query: 198 ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLY 257
+NRQTL+FSAT+P L+ FA+AGL++ V+LD + ++ +L L F R EK A L+Y
Sbjct: 185 QNRQTLMFSATIPEELSSFARAGLKEYVFVKLDSEYTLNENLSLNFLLARNNEKFAILIY 244
Query: 258 MIREHI----SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFR 313
++ + I +++ T+IF STK+HV+ ++ + + +E YG MD ARK ++ F+
Sbjct: 245 LLEKIINYSENTENSTIIFASTKYHVDLVSAVLEKFKIENVSIYGKMDPLARKDQINEFK 304
Query: 314 ARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSE 373
+++ L+VTD+AARGID+P + NVI++D P + KIF+HR GR RAG+TG ++ V+
Sbjct: 305 SKRVNVLVVTDLAARGIDLPHVQNVIHFDLPAQTKIFIHRSGRTGRAGKTGNIYAMVSMN 364
Query: 374 DMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSD 433
++ Y+ ++ ++ + I SE+E SK D N + YG P ++I+
Sbjct: 365 EIMYINEVCYYVGRKI----SEKE------DDFSKKD----NNKAYYGVVPSSLIEDTQG 410
Query: 434 RVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVLEGG 493
++ + ++ +Q+ NAF + KT+ SK S++ K + RE ++P+F N+++
Sbjct: 411 KIEILQKEDIEIYKMQQMANNAFIQFLKTRESASKVSVKNQKMINREKINPLFANLVKDE 470
Query: 494 ELMALAFSERLKAFRPKQTILE 515
E +AF +++ F+P+Q LE
Sbjct: 471 E-EKIAFLNQIRHFKPQQCALE 491
>gi|444315728|ref|XP_004178521.1| hypothetical protein TBLA_0B01590 [Tetrapisispora blattae CBS 6284]
gi|387511561|emb|CCH59002.1| hypothetical protein TBLA_0B01590 [Tetrapisispora blattae CBS 6284]
Length = 929
Score = 413 bits (1062), Expect = e-112, Method: Compositional matrix adjust.
Identities = 226/547 (41%), Positives = 325/547 (59%), Gaps = 60/547 (10%)
Query: 18 KKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77
KK K G F S + + I +KGYK PTPIQRKT+PLIL D+V MARTGSGKTAAF
Sbjct: 100 KKFKKGSFASFGFNRFIMNNINKKGYKQPTPIQRKTIPLILQKRDIVGMARTGSGKTAAF 159
Query: 78 LVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF 137
L+PM+++L H + GVR +ILSP+R++A+QT + KE + T+LR LL GGDS+E QF
Sbjct: 160 LLPMIEKLKTHSSKIGVRGVILSPSREIAIQTHRVFKEFSKNTELRSVLLTGGDSLEDQF 219
Query: 138 EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS 197
+ NPD++IATPGR +H E++ + LKSVEY+VFDEAD LF MGF EQL+++L L
Sbjct: 220 GMMMSNPDVVIATPGRFLHLKVEMK-LDLKSVEYIVFDEADRLFEMGFEEQLNELLAALP 278
Query: 198 ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLY 257
+NRQ+LLFSATLP++L EFAKAGL++P LV+LD ++KIS +L++ F + ++EE+ + LL+
Sbjct: 279 DNRQSLLFSATLPNSLVEFAKAGLKNPVLVKLDQESKISDNLEMLFLSCKKEERESNLLF 338
Query: 258 MIR----------------------------------------------EHISSDQQTLI 271
+++ + I +Q T+I
Sbjct: 339 LLQDVIGVPVASTEEMKRFQTDSREVEEKEEKEKEKGKEKEKRAKYYKSDEIPHEQATII 398
Query: 272 FVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGID 331
FV T+HHVE+++ L + G S YG +DQ AR+ + +F T L+VTDVAARG+D
Sbjct: 399 FVPTRHHVEYISQLLMKCGYLVSYLYGTLDQHARRNQLRQFCFGITRILVVTDVAARGVD 458
Query: 332 IPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRA 391
IPLL NVIN+ P KIFVHRVGR ARAG G A+S V+ ++ YL++L FL K +
Sbjct: 459 IPLLPNVINYSLPGSSKIFVHRVGRTARAGNRGWAYSIVSESELPYLVELGTFLGKKVIT 518
Query: 392 APSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRT 451
E++ + D + N + G P+ ++ D + + D DL ++T
Sbjct: 519 TGMVEKLGVSFDKIS-------YNKWMVLGSGPRVDVESFGDLYKNVYDQEFDLQMSKKT 571
Query: 452 CTNAFRLYSKTKPLPSKESIRRGKDL---PREGLHPMFKNVLEGGELMALAFSERLKAFR 508
C A +LY +T+ S +S++R K+L +G + F LE +L L + +
Sbjct: 572 CEKAEKLYLRTRGGASNDSVKRSKELILQKWDGQNVKFGQDLERAKLELL---NKFALRK 628
Query: 509 PKQTILE 515
K+T+ E
Sbjct: 629 NKETVFE 635
Score = 47.8 bits (112), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 10/111 (9%)
Query: 580 HGSKRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQK 639
+G +K KTFKDE +F+S +E V GF +N A DL D+ + K
Sbjct: 720 NGQTKKRKTFKDERFFLSHYADPKKVENEEVV---DGF-INAASEASYDLNNDEKIQVHK 775
Query: 640 QKQ-VYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKW 688
Q WD++ KKY+ L + + K + ESG K+ AT ++G Y++W
Sbjct: 776 QSSATVKWDRKRKKYVNLQGID----NKKYIIGESGRKIPATFRSGKYEEW 822
>gi|323338349|gb|EGA79576.1| Dbp10p [Saccharomyces cerevisiae Vin13]
Length = 581
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 231/532 (43%), Positives = 316/532 (59%), Gaps = 71/532 (13%)
Query: 16 QKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTA 75
+K K K G F S LS V IKRKG++ PTPIQRKT+PLIL D+V MARTGSGKTA
Sbjct: 34 EKTKHKKGSFPSFGLSKIVLNNIKRKGFRQPTPIQRKTIPLILQSRDIVGMARTGSGKTA 93
Query: 76 AFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMES 135
AF++PM+++L H + G RA+ILSP+R+LA+QT K+ R T+LR LL GGDS+E
Sbjct: 94 AFILPMVEKLKSHSGKIGARAVILSPSRELAMQTFNVFKDFARGTELRSVLLTGGDSLEE 153
Query: 136 QFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQ 195
QF + NPD+IIATPGR +H E+ ++ LKSVEYVVFDEAD LF MGF EQL+++L
Sbjct: 154 QFGMMMTNPDVIIATPGRFLHLKVEM-NLDLKSVEYVVFDEADRLFEMGFQEQLNELLAS 212
Query: 196 LSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAAL 255
L RQTLLFSATLP++L +F KAGL +P LVRLD +TK+S +L++ F + + ++ A L
Sbjct: 213 LPTTRQTLLFSATLPNSLVDFVKAGLVNPVLVRLDAETKVSENLEMLFLSSKNADREANL 272
Query: 256 LYMIREHI--------------------------SSDQQ--------------------- 268
LY+++E I +D+Q
Sbjct: 273 LYILQEIIKIPLATSEQLQKLQNSNNEADSDSDDENDRQKKRRNFKKEKFRKQKMPAANE 332
Query: 269 ------TLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
T++FV T+HHVE+++ L R+ G S YG +DQ ARK + FRA T L+V
Sbjct: 333 LPSEKATILFVPTRHHVEYISQLLRDCGYLISYIYGTLDQHARKRQLYNFRAGLTSILVV 392
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
TDVAARG+DIP+L NVIN+ P KIFVHRVGR ARAG G A+S V ++ YLLDL
Sbjct: 393 TDVAARGVDIPMLANVINYTLPGSSKIFVHRVGRTARAGNKGWAYSIVAENELPYLLDLE 452
Query: 383 LFLSKPIRAAPSEEEVLLDMDGVMSK--IDQAIANGE-----------TIYGRFPQTVID 429
LFL + I P + ++ VM K ID+ + + G P+ ++
Sbjct: 453 LFLGEKILLTPMYDSLV----DVMKKRWIDEGKPEYQFQPPKLSYTKRLVLGSCPRLDVE 508
Query: 430 LVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREG 481
+ D + ++ S+ DL ++T A +LY +T+ S ES++R K++ G
Sbjct: 509 GLGDLYKNLMSSNFDLQLAKKTAMKAEKLYYRTRTSASPESLKRSKEIISSG 560
>gi|1764094|gb|AAB39865.1| ATP-dependent RNA helicase [Leishmania amazonensis]
Length = 855
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 247/662 (37%), Positives = 372/662 (56%), Gaps = 47/662 (7%)
Query: 17 KKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAA 76
+K+ GGF+S NL + AI ++G+ VPTPIQRK +P +L G DVVAMARTGSGKTAA
Sbjct: 18 EKEGGGGGFQSFNLEKPLLDAILKQGFSVPTPIQRKAIPPMLQGNDVVAMARTGSGKTAA 77
Query: 77 FLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQ 136
FL+PML L H G+R L+LSPTR+L+LQ L+ L ++ DLR + LVGGDSM+ Q
Sbjct: 78 FLIPMLNTLKAHSKIVGIRGLVLSPTRELSLQILRNGFALNKFLDLRFAALVGGDSMDQQ 137
Query: 137 FEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL 196
FE LA NPDI++ATPGRL+H + E + L SV +V DEAD LF +G Q+ I+ +L
Sbjct: 138 FELLASNPDIVVATPGRLLHIMEEA-SLHLTSVRCLVLDEADRLFELGLQPQIGAIMQKL 196
Query: 197 SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALL 256
E+ Q LFSAT+P+ LAEF A L +P ++RLD + K+S LK + F +R +EK AAL+
Sbjct: 197 PESCQRALFSATMPTVLAEFTSAWLHNPVVIRLDSEMKLSDQLKQSAFLVRNDEKVAALI 256
Query: 257 YMIR------EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVS 310
+++ E +++ Q LIFV +K HVEFL ++ + S +G MDQ+AR++ V
Sbjct: 257 VLLKRVLHVGEAAANNAQALIFVESKFHVEFLLMILTAYSISTSAVHGQMDQEARRLAVR 316
Query: 311 RFRARKTMFLIVTDVAARGIDIPLL-DNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSF 369
F R++ ++VTDVAARG + LL DN++ + FP PK+FVHRVGR ARAGR+GTA+S
Sbjct: 317 SFAKRESSVMVVTDVAARGYGLDLLLDNIVYFSFPFNPKLFVHRVGRVARAGRSGTAYSI 376
Query: 370 VTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVID 429
+T ED Y +DL F+ +P++++P ++L D + YGR P+ I
Sbjct: 377 MTFEDFPYYVDLMQFIGRPLQSSPVPGDLLFTAD-------------DGCYGRLPEEDIQ 423
Query: 430 LVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKD----LPREGLHPM 485
L D ++ + ++ ++ ++ R NA + +++TK PS E+I+ + R LHPM
Sbjct: 424 LELDFLKRLHENDVEVRNMARVVENAHKKFNRTKKKPSHEAIQEARKPQYAFDRTPLHPM 483
Query: 486 FKNVLEGGELMALAFSERLKAFRPKQTILE--------------AEGEAARSKHLQGP-- 529
L + A LK F+PK+ LE ARS + +G
Sbjct: 484 LLKRLGSTRVRADEVRFDLKRFKPKELFLEIGSKEKLFEIRPPETAQSLARSANAEGGVK 543
Query: 530 --SSQWVDVMKKKRAVHEKIINLVHQQRSSKSMEKEVEPEADSLMAKEIKETHGSKRKAK 587
+ V K + E+++ ++R E+EV + S+ + + + +
Sbjct: 544 KGGAASVAPPAKPFSFAEQMLQRAQERRKR---EREVG-SSTSVNSDDAVMNLVTHLRQA 599
Query: 588 TFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWD 647
EE S V + + L R ++ A +D+ A+ + +Q+QV+ W
Sbjct: 600 ALGQEESMESGVYRDENFFMDLERRDTLNNAHYSVKDATMDMTAETAEEAAQQRQVFAWS 659
Query: 648 KR 649
K+
Sbjct: 660 KK 661
>gi|270358682|gb|ACZ81471.1| CNB00610 [Cryptococcus heveanensis]
Length = 974
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 272/762 (35%), Positives = 410/762 (53%), Gaps = 111/762 (14%)
Query: 9 ELKRREKQKKKSKSGG--FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGA--DVV 64
+L+R + KKS G +++LN+S ++ +++ ++ +K PTPIQR ++P LS D++
Sbjct: 13 DLERPKASSKKSAGAGSQWQALNISDDLIKSLLQRKFKSPTPIQRSSIPGALSTPPRDIL 72
Query: 65 AMARTGSGKTAAFLVPMLQRL-NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT--- 120
MARTGSGKT A+L+P+LQR+ + H RALIL P+R+LA+Q K+L R T
Sbjct: 73 GMARTGSGKTLAYLIPLLQRIGSSHSDVACPRALILCPSRELAVQIYSVGKDLARGTIRG 132
Query: 121 ----------------DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDM 164
LR +L++GG+ +++QF+++++NPD++IATPGR +H E+ +
Sbjct: 133 KGKGKEKTSDRDGKVESLRWALIIGGEGLDTQFDKMSRNPDVVIATPGRFLHLAVEMR-L 191
Query: 165 SLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDP 224
L+ ++ VV+DEAD LF MGF QL +IL +L RQ LLFSATLPS++AEFAKAGL +P
Sbjct: 192 DLRHLQVVVYDEADRLFEMGFDVQLREILSRLPPTRQNLLFSATLPSSVAEFAKAGLVNP 251
Query: 225 HLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI---------SSDQQTLIFVST 275
L+RLD + KISPDL L FF+++ EK AALL ++++ I S Q ++FVST
Sbjct: 252 LLIRLDSEHKISPDLDLRFFSVKPIEKDAALLVLLKDVIKVPLSSGDNSHSPQAIVFVST 311
Query: 276 KHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL 335
KHHV+++N L + G S Y +DQ AR + FR R T L+VTDVAARG+DIP++
Sbjct: 312 KHHVDYINELLKTAGFRSSHIYSSLDQVARHQQLHHFRNRLTDVLVVTDVAARGLDIPVM 371
Query: 336 DNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSE 395
D+V+N+DFP P++FVHRVGR ARAGR G A+S VT +D YL DL FL
Sbjct: 372 DHVVNYDFPSGPRVFVHRVGRTARAGRKGNAWSLVTRDDWPYLFDLQTFLG--------- 422
Query: 396 EEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNA 455
+D+ +NG+ + P I + + + +D A +QR
Sbjct: 423 -------------LDRMGSNGDMLRN-IPDDNISQMIEYITTSLDEQAPNLEMQRNVMRK 468
Query: 456 F-----RLYSKTKPLPSKESIRRGKDLPREGLH-PMFKNVLEGGELMALAFSERL----K 505
R K P +++ GK+L H P+ + E GE ++ RL
Sbjct: 469 GQAMFERSRGKADPASYRKAKLFGKELDSGQAHIPVDIGLQERGESSLVSGRSRLLSSVA 528
Query: 506 AFRPKQTILEA--EGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKSMEKE 563
A+ P +TI E G+A+ + +MK +R V + R E+
Sbjct: 529 AYTPAETIFEVGKRGDASTAT-----------LMKNRRKVASR--------RQRPPAEEP 569
Query: 564 VEPEADSLMAKEIKETHGSKRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLE 623
+ D + A+ K G AKTF+D +++ E G S++S L
Sbjct: 570 PLSDLDGVPARN-KPVSG---PAKTFRDSSFYLDHSRQGADSEKGYSLQSGAAVP-ESLS 624
Query: 624 AAVLDLVADDSGGLQKQKQV-YHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-K 681
A+ D+ AD+ G + QK WD++ +K++K G + + K+++TESGA + AT
Sbjct: 625 ASAFDMTADEGDGPKAQKASQLRWDRKKRKFVKNAPG---TDNVKMIRTESGAMLPATYN 681
Query: 682 TGIYKKWKERSHKKVYLKGASNEGNAEETTSVPGGRHLGGNN 723
+G Y +WK R +V T +P R GGN+
Sbjct: 682 SGRYNEWKARHRHRV-------------TDGLPIERSAGGNS 710
>gi|226532373|ref|NP_001142290.1| uncharacterized protein LOC100274459 [Zea mays]
gi|194708046|gb|ACF88107.1| unknown [Zea mays]
Length = 642
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 240/636 (37%), Positives = 369/636 (58%), Gaps = 65/636 (10%)
Query: 163 DMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLR 222
++ L+SVEYVVFDEAD LF MGFAEQL +I+G+L QT+LFSATLP L EFA+AGL
Sbjct: 2 NLKLQSVEYVVFDEADRLFEMGFAEQLQEIIGRLPGGHQTVLFSATLPKLLVEFARAGLT 61
Query: 223 DPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFL 282
+P L+RLDVD+K++ LK +FF +R++ K A LLY+++ + Q ++FV+TKHH E+L
Sbjct: 62 EPVLIRLDVDSKLNEQLKTSFFLVREDTKTAVLLYLLQNVVRPQDQNVVFVATKHHAEYL 121
Query: 283 NVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWD 342
L +G+ + Y +DQ ARKI++++F K LIVTD+AARG+DIPLLDNVIN+
Sbjct: 122 TELLTGQGVSCAHIYSALDQTARKINLAKFTHNKCSTLIVTDLAARGLDIPLLDNVINYS 181
Query: 343 FPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEV---- 398
FP K K+F+HRVGR ARAGR+GTA+S V +++ YLLDLHLFL + + A EE
Sbjct: 182 FPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEVPYLLDLHLFLGRSVTLARPHEEPSSAG 241
Query: 399 LLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRL 458
+ DGV+ GR PQ+V+D ++ + +S +L LQR NA +
Sbjct: 242 AVGRDGVL--------------GRVPQSVVDDEDSSLQTALQASLELQGLQRVANNAQQQ 287
Query: 459 YSKTKPLPSKESIRRGK--DLPREGLHPMFKNVLEGGELMALAFSERLKAFRPKQTILEA 516
Y +++P PS ESI+R K DL GLHP+F + E GEL L + +K +R + TI E
Sbjct: 288 YLRSRPAPSPESIKRAKELDLAELGLHPLFSSCFEEGELQRLRLVDSIKNYRTRTTIFEI 347
Query: 517 EGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKS-------MEKEVEPEAD 569
+ + PSSQ +M+ KR K I HQ R + ++E+ + +
Sbjct: 348 NASS------KDPSSQ---MMRAKRQRDRKAITSFHQGRQERQDGPADPVPQRELPQKEE 398
Query: 570 SLMAKEIK---------------ETHGSKRKAK--TFKDEEYFISSVPTNHHMEAGLSVR 612
M + ++ G+KR+ K + +D+E+++ P + E GLSV
Sbjct: 399 EDMVETVEGVFTEVVGQKQPRPGPNQGAKRRRKEASQRDQEFYVPYRPKDFDSERGLSVS 458
Query: 613 SDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTE 672
G ++ AVLDL+ D++ + + +Q WD++ K+++ G+ K +KTE
Sbjct: 459 GAGGAFEQQVAGAVLDLMGDEAQNMSRGRQQLKWDRKKKRFV----GQSGQEDKKKIKTE 514
Query: 673 SGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNAEETTSVPGGRHLGGNNRKFRGG-K 730
SG + ++ K +Y+KWK++ +K+ + + EG + P H GG + +G +
Sbjct: 515 SGRFISSSYKRDLYQKWKQK--QKIDDRDSEEEGPSNRRGPGP---HRGGKRGRSQGASQ 569
Query: 731 NQQRSVPNAHVCSEIKDLDQVRKERQKKADRIAFMK 766
++ SVP H+ SE+K +Q+ K+R ++A + F++
Sbjct: 570 SRASSVPTGHMRSELKTKEQILKQR-RQAQKQRFLQ 604
>gi|323509361|dbj|BAJ77573.1| cgd3_2330 [Cryptosporidium parvum]
Length = 557
Score = 403 bits (1036), Expect = e-109, Method: Compositional matrix adjust.
Identities = 211/480 (43%), Positives = 309/480 (64%), Gaps = 28/480 (5%)
Query: 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPML 82
G F+ SP + +IK GY +PTPIQRK P IL+G DVVAMARTGSGKTA F++PM+
Sbjct: 4 GTFQCFGFSPKLLESIKIIGYSLPTPIQRKCFPSILAGRDVVAMARTGSGKTAGFVLPMI 63
Query: 83 QRLN-QHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
+RL H G+R +ILSPTR+LALQT + ++L T+L + L GG S++ QFE L+
Sbjct: 64 ERLGCSHSQIVGIRGVILSPTRELALQTYRVVRKLACKTNLVVCALTGGSSLDRQFESLS 123
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
NPDI++ATPGRL HH+ E +SL +V+ +V DEAD LF MG A Q+ KIL + +NRQ
Sbjct: 124 GNPDIVVATPGRLFHHIIEA-GLSLIAVKIIVLDEADRLFEMGLASQIEKILESIPKNRQ 182
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
+L SAT+P+ALA F+K L +P ++++D D +S LKL F +R++EK A+LLY++R
Sbjct: 183 CVLVSATMPTALASFSKVMLNEPEVIQIDSDYILSETLKLTFLFVREDEKLASLLYLLRN 242
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
I S ++ +IF +TKHHV+++ + + S YG+MDQ+AR +H++ FR K+ LI
Sbjct: 243 TIPSHERAIIFCATKHHVDYIVKILESNNIIVSYIYGNMDQEARTMHLNTFRKNKSRALI 302
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
VTD+AARG+DIP++ VIN+DFP PK+FVHR GR ARAG+ G AFS +TS D+ Y +DL
Sbjct: 303 VTDIAARGVDIPMIKYVINFDFPLSPKLFVHRTGRTARAGQHGRAFSLITSRDLPYTIDL 362
Query: 382 HLFLSKPIRAAPSEE---------------EVLLDMDGV----MSKIDQAIAN---GET- 418
LFL + S++ E + D + +S I A N GE+
Sbjct: 363 CLFLGLKMTTLTSKQTTDSSNYSLNTENRVEAGIRDDDIHEEGISFIKPASLNDFHGESR 422
Query: 419 -IYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDL 477
I FP +++ + + ++ ++++ +R+ +A+ LY KT+ SKES++R ++L
Sbjct: 423 LILAGFPDLTLEI--ESIERVLTENSEIERCRRSMESAYLLYLKTRTPSSKESLKRSREL 480
>gi|407831412|gb|EKF98153.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
Length = 763
Score = 403 bits (1036), Expect = e-109, Method: Compositional matrix adjust.
Identities = 256/780 (32%), Positives = 412/780 (52%), Gaps = 101/780 (12%)
Query: 57 ILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116
++ G+DVVAMARTGSGKTAAFL+PML L H G+R L+L+PTR+L+LQ L+F +L
Sbjct: 1 MIQGSDVVAMARTGSGKTAAFLIPMLNLLKSHSKTVGIRGLVLAPTRELSLQILRFGIQL 60
Query: 117 GRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDE 176
++ DLR + LVGG+S+E QFE L NPDI++ATPGRL+H + E + L V+ +V DE
Sbjct: 61 DKFLDLRFAALVGGNSLEQQFELLGSNPDIVVATPGRLLHIMEEA-SLKLSMVKCLVLDE 119
Query: 177 ADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKIS 236
AD LF +G Q+ ++ ++ + Q LFSAT+PS LAEF AGL +P ++RLD + K+S
Sbjct: 120 ADRLFELGLQPQIVAVMQKVPDACQRALFSATMPSVLAEFTSAGLHNPVVIRLDAEMKLS 179
Query: 237 PDLKLAFFTLRQEEKHAALLYMIREHI------SSD---QQTLIFVSTKHHVEFLNVLFR 287
LK + F +R +EK AAL+ ++++ I +SD QQ LIFV +K HV++L ++
Sbjct: 180 DKLKQSAFVVRNDEKVAALIVLLKKVIGVATGDTSDGTVQQALIFVESKFHVDYLQMIME 239
Query: 288 EEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKP 347
+ S +G MDQ+AR+ V F R+T +IVTDVAARG+D+PLLDNV+N+ FP P
Sbjct: 240 AYLISCSAVHGQMDQEARRNAVQAFSRRETHVMIVTDVAARGLDLPLLDNVVNFSFPSTP 299
Query: 348 KIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMS 407
K+FVHRVGR ARAGR+G A+SF+T ED Y +DL F+ +P++ +E ++L D
Sbjct: 300 KLFVHRVGRVARAGRSGAAYSFLTFEDFPYYVDLMAFIDRPLQCRRTEGDLLFTAD---- 355
Query: 408 KIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPS 467
+ +GR P+ + L D +R + ++ ++ + NA + +++TK +
Sbjct: 356 ---------DGCFGRMPEEDLQLELDFLRRLALEDVEVRNMAKVVDNAHKKFTRTKKKAT 406
Query: 468 KESIRRGK----DLPREGLHPMFKNVLEGGELMALAFSERLKAFRPKQTILEA------- 516
+ I+ + LHP+F LE + A LK F+ K+++LE
Sbjct: 407 HDGIQEARQEKYQFDNTPLHPIFVERLEAKRIAADEARFDLKRFKAKESVLEMIHGEKMF 466
Query: 517 --------------------EGEAARSKHLQGPSSQWVD---VMKKKRAVHEKIIN---- 549
E +AA K Q D + K+ V EK ++
Sbjct: 467 QIMKPVTIQTLWKEKRAQAEEDDAATGKGAAEEEPQKSDRAKITKRDVTVPEKKLSLGEK 526
Query: 550 -LVHQQRSSKSMEKEVEPEADSLMAKEIKETHGSKR-------KAKTFKDEEYFISSVPT 601
L+ Q K +E + + A + T +R + ++D++YF+ +
Sbjct: 527 LLLKAQERKKRERQERDGATNEEGAVTVCPTRSMQRFESEYGGGSGKYRDQDYFMDTTKR 586
Query: 602 NHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGER 661
+ +A SV+ A D+ A+ + Q+Q+QVY W K+ +++++N +
Sbjct: 587 STMEDAHYSVKD-----------ATFDVGAESAQEAQQQRQVYAWSKKKNRFVRMNVND- 634
Query: 662 VSASGKVVKTESGAKVK-ATKTGIYKKWKERSHKKVYLKGASNEGNAEETTSVPGGRHLG 720
A + VK E+G V +K Y +W ++S+ ++ G + + G
Sbjct: 635 AKAMLRGVKNEAGKAVNFKSKLEAYSRWMKKSNMRIQDVGEEEDLGPLHRARAAQEQGSG 694
Query: 721 GNN------------------RKFRGGKNQQRSVPNAHVCSEIKDLDQVRKERQKKADRI 762
G N +K R G+ Q+R + HV + +++ Q++++ +K+ R+
Sbjct: 695 GYNHDGDDDDDTVDISDPNQGKKLRVGRKQRRLPKDGHVRT-FEEMAQIKRKAEKERARL 753
>gi|294929941|ref|XP_002779431.1| DEAD box ATP-dependent RNA helicase, putative [Perkinsus marinus
ATCC 50983]
gi|239888539|gb|EER11226.1| DEAD box ATP-dependent RNA helicase, putative [Perkinsus marinus
ATCC 50983]
Length = 863
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 278/765 (36%), Positives = 400/765 (52%), Gaps = 160/765 (20%)
Query: 18 KKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77
KK G F+++ LS +F+AI++ GY PTPIQRK +P+IL G+DVVAMARTGSGKTAAF
Sbjct: 18 KKISGGAFQTMGLSDPLFKAIQKMGYNQPTPIQRKAIPVILGGSDVVAMARTGSGKTAAF 77
Query: 78 LVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF 137
++PM+Q L H G RA+ILSPTR+LA+QT+K T+ LG++TDLR+ L+VGG SMESQF
Sbjct: 78 VIPMIQTLKGHSEVVGARAVILSPTRELAMQTIKVTRMLGKFTDLRLCLIVGGHSMESQF 137
Query: 138 EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS 197
+ L+ NPD++I TPGRL+HH+ E D+SL+ V+Y+VFDEAD LF MGF++ + IL
Sbjct: 138 DRLSSNPDVLICTPGRLVHHMVEA-DLSLQRVQYIVFDEADRLFEMGFSDDMQTILKATP 196
Query: 198 ENRQTLLFSATLPSALAEFAKAGLR--DPHLVRLDVDTKISPDLKLAFFTLRQEEKHAAL 255
+RQ LLFSATLPS L +F++AGLR +RLDV+ IS L L F + K AAL
Sbjct: 197 PSRQCLLFSATLPSQLTQFSRAGLRSDSTEFIRLDVEHTISDTLDLWFLYTTADSKPAAL 256
Query: 256 LYMIRE-----HISSDQ-----------------QTLIFVSTKHHVEFLNVLFREEGLEP 293
+ ++R+ + ++D +T++FV+T+H+VEF L + G+
Sbjct: 257 ISLLRKLQSMGNANADSSTAVVAAGKGGKKAWSPKTIVFVATRHNVEFFASLLTQVGITN 316
Query: 294 SVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHR 353
+ YG MDQ R +S+FR+ K L+VTDVAARGIDIP LD VIN+DFP K+FVHR
Sbjct: 317 APIYGSMDQTQRTSSLSKFRSGKASVLLVTDVAARGIDIPQLDYVINYDFPSSSKLFVHR 376
Query: 354 VGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAI 413
GR ARAG G + S M L+ + ++P + S L I +A
Sbjct: 377 CGRTARAGAKGXXGPRLDSRSMMSAYHLY-YKTRPAASNQSVRRAKL--------ILRAE 427
Query: 414 ANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRR 473
A G PQ ++D R ++ADL S +S+
Sbjct: 428 AGG-------PQRLLDTPHPAFR----TAADLGS---------------------QSV-- 453
Query: 474 GKDLPREGLHPMFKNVLEGGELMALAFSERLKAFRPKQ--------TILEAEGEAARSKH 525
++V E +++A +L++FRP Q T+++ E A S+H
Sbjct: 454 -------------EDVKEKLDMIA-----QLRSFRPSQQPKMAGSTTVIKPETMAEISQH 495
Query: 526 LQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKSMEKEVEPEADSLMA------------ 573
+ P D+ K RA + V Q +S + E E + +A
Sbjct: 496 VVAPRQLRHDLKKMSRAKQQ-----VEHQEGGESDDSEAEELENVEVAQAGEKRSLPIPQ 550
Query: 574 KEIKETHG-SKRKAKTF-------KDEEYFISSVPTNHHMEAGLSV------RSDQGFGL 619
+ ++TH SKR K + E +++H+E G+SV RS++ F L
Sbjct: 551 QADRQTHRLSKRARKKLEKGGGLPQPGEEVDGRKKSSYHLEEGVSVFNQTTCRSNE-FYL 609
Query: 620 NRLEA------------------AVLDLVADDSGGLQKQKQVYHWDKRGKKYI------- 654
++A A LDLV DD + K K V WD + KKY+
Sbjct: 610 GSVDADPESIEAEEREKQLDIEKAQLDLVPDDRESMTKAKSVMRWDAKKKKYLPVMVAGD 669
Query: 655 ---KLNNGERVSASGKVVKTESGAKVKATKTGIYKKWKERSHKKV 696
+ + +R + +GK+V E K+ IY KW + SHK++
Sbjct: 670 GGAPIASRKRRNEAGKLVSGE------MEKSDIYSKWLKSSHKRI 708
>gi|223996771|ref|XP_002288059.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220977175|gb|EED95502.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 384
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 195/384 (50%), Positives = 270/384 (70%), Gaps = 19/384 (4%)
Query: 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPML 82
GGF++LNLSP +F IK+ GY+ PTP+QRK++P++L+G+D V MARTGSGKT AFL+P+L
Sbjct: 1 GGFQTLNLSPPIFGGIKKLGYRTPTPVQRKSLPILLTGSDAVVMARTGSGKTVAFLIPVL 60
Query: 83 QRLNQHVPQGG-----------VRALILSPTRDLALQTLKFTKELGRYT----DLRISLL 127
+RL +G A++LSPTR+L+LQTLK + LG+Y +
Sbjct: 61 ERLLTARGEGNNSRGSKDASKSAFAVLLSPTRELSLQTLKVLRTLGQYCLNENKFNFIGI 120
Query: 128 VGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAE 187
GG+SME QF L+ +PDII+ATPGRL HHLSE+ D L++ E VVFDEAD LF MGFA
Sbjct: 121 NGGESMEKQFALLSSHPDIIVATPGRLSHHLSEIPDFHLRNCEMVVFDEADRLFEMGFAM 180
Query: 188 QLHKILGQLSENRQTLLFSATLPSALAEFAKAGL-RDPHLVRLDVDTKISPDLKLAFFTL 246
QL +I + E+RQT+LFSAT+P AL EF K G+ DP +VRLD + ++S +L++ F T
Sbjct: 181 QLRQICSTMPEHRQTMLFSATMPKALVEFTKTGMMHDPQVVRLDNEVQVSEELRIGFVTC 240
Query: 247 RQEEKHAALLYMIREHISSDQQ---TLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQD 303
R +EK A LL+++R+H+ + TLIF +T+HHVE+L +L GL + YG+MD
Sbjct: 241 RSDEKDAVLLHLVRDHVGKHSKRGLTLIFAATRHHVEYLTLLLETSGLSATQIYGNMDNT 300
Query: 304 ARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRT 363
AR+ +++ F++ + L+VTDVAARGIDIPL+D+VI++ FPP K+FVHR GRAARAGR
Sbjct: 301 ARQQNLNAFQSGQCPILVVTDVAARGIDIPLIDHVIHYAFPPSAKLFVHRSGRAARAGRI 360
Query: 364 GTAFSFVTSEDMAYLLDLHLFLSK 387
G + V E++ Y++DLHLFL +
Sbjct: 361 GYCWGIVDPEELPYMVDLHLFLGR 384
>gi|397640887|gb|EJK74372.1| hypothetical protein THAOC_03953 [Thalassiosira oceanica]
Length = 1035
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 224/542 (41%), Positives = 312/542 (57%), Gaps = 89/542 (16%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE+LNLSP +F IKR GY+ PTP+QRK++P++L+G D V MARTGSGKT AFL P+L+R
Sbjct: 15 FEALNLSPPIFAGIKRLGYRTPTPVQRKSLPILLTGNDSVVMARTGSGKTVAFLAPLLER 74
Query: 85 L---------NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT----DLRISLLVGGD 131
L + A+ILSPTR+L+LQTL+ + LG + + GG+
Sbjct: 75 LVSARGESASSSENSSRSAYAVILSPTRELSLQTLRVLRTLGHHCIQNYGFNFCGINGGE 134
Query: 132 SMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHK 191
SME QF LA +PD+I+ATPGRL HHLSE+ D L+ E VVFDEAD LF MGFA QL +
Sbjct: 135 SMEKQFSLLAGHPDVIVATPGRLSHHLSEIPDFHLRQCEVVVFDEADRLFEMGFAMQLRQ 194
Query: 192 ILGQLSENRQTLLFSATLPSALAEFAKAG-LRDPHLVRLDVDTKISPDLKLAFFTLRQEE 250
I ++ E+RQT+LFSAT+P AL EF K G + DP +VRLD + ++S +L++ F T R E
Sbjct: 195 ICSKMPESRQTMLFSATMPRALVEFTKTGMMHDPTVVRLDSEVQVSDELRIGFVTCRSAE 254
Query: 251 KHAALLYMIRE----------------------------------------HISSDQQ-- 268
K A LL+++R+ H+ +
Sbjct: 255 KDAVLLHLVRDVLPLMQGTDTTGASAAAEEEEVEEDGAASSKKRKKQKRVKHVGKQSKRG 314
Query: 269 -TLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAA 327
TLIF +T+HHVE+L +L GL+ + YG+MD +AR+ ++ F+ L+VTDVAA
Sbjct: 315 LTLIFAATRHHVEYLTLLLNTTGLKTTQIYGNMDNEARQKNLRSFQNGTCPILVVTDVAA 374
Query: 328 RGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSK 387
RGID+PL+D+VI++ FPP K+F+HR GRAARAGR G + V E+M Y++DLH+FL +
Sbjct: 375 RGIDVPLIDHVIHYAFPPSAKLFIHRSGRAARAGRIGYCWGIVDPEEMPYMVDLHVFLGR 434
Query: 388 PIRAA---------PSEEEVLLDMDGVMSKI----DQAIANGETIY------------GR 422
+ +EE +D G S I D++ E Y G
Sbjct: 435 KMSTGRDESEKGVDEAEETATIDEVGESSSIVEGGDKSSETAEVTYTLDEMTPDMVHFGS 494
Query: 423 FPQTVIDLVSDRVREIIDS----SAD---LNSLQRTCTNAFRLYSKTKPLPSKESIRRGK 475
P++++ + VR +IDS S D L SL R C NA + Y +++P S+E +RR K
Sbjct: 495 VPESILVEEVENVRRLIDSELAGSQDAEMLRSLTRVCNNAMKQYRRSRPEASREGVRRAK 554
Query: 476 DL 477
L
Sbjct: 555 AL 556
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 74/143 (51%), Gaps = 16/143 (11%)
Query: 621 RLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKT--ESGAKVK 678
R+E +LDLV D++ L K++++ WDK +KYI+ GE +S K +T ESG +K
Sbjct: 839 RIEENMLDLVGDENTDLVKRQRMMRWDKSKRKYIQTTVGEELSGDSKSKRTRLESGKLIK 898
Query: 679 ATKTG---IYKKWKERSHKKVYLKGASNEGNAEETTSVPGGRHLGGNNRKFRGGKNQQRS 735
+ +Y+KW++R++K + G ++ AE R +K +GG
Sbjct: 899 TDRAKLGELYEKWQKRTNKSIGRVGVFDDVVAEGDAPADDSRTA---RKKGQGG------ 949
Query: 736 VPNAHVCSEIKDLDQVRKERQKK 758
A + E K ++RKER++K
Sbjct: 950 --GAKLRDETKTAVEIRKERERK 970
>gi|48734612|gb|AAH71251.1| Ddx54 protein, partial [Mus musculus]
Length = 641
Score = 390 bits (1003), Expect = e-105, Method: Compositional matrix adjust.
Identities = 238/639 (37%), Positives = 363/639 (56%), Gaps = 71/639 (11%)
Query: 163 DMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLR 222
++ L+SVEYVVFDEAD LF MGFAEQL +I+G+L QT+LFSATLP L EFA+AGL
Sbjct: 1 NLKLQSVEYVVFDEADRLFEMGFAEQLQEIIGRLPGGHQTVLFSATLPKLLVEFARAGLT 60
Query: 223 DPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFL 282
+P L+RLDVD+K++ LK +F +R++ K A LLY+++ + QT++FV+TKHH E+L
Sbjct: 61 EPVLIRLDVDSKLNEQLKTSFLLVREDTKAAVLLYLLQNVVRPQDQTVVFVATKHHAEYL 120
Query: 283 NVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWD 342
L +G+ + Y +DQ ARKI++++F K LIVTD+AARG+DIPLLDNVIN+
Sbjct: 121 TELLMGQGVSCAHIYSALDQTARKINLAKFTHNKCSTLIVTDLAARGLDIPLLDNVINYS 180
Query: 343 FPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAA-PSEEEVLLD 401
FP K K+F+HRVGR ARAGR+GTA+S V +++ YLLDLHLFL + + A P EE + D
Sbjct: 181 FPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEVPYLLDLHLFLGRSVTLARPCEEPSVAD 240
Query: 402 MDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSK 461
G + + GR PQ+V+D ++ + +S DL L R NA + Y +
Sbjct: 241 AVGR-----------DGVLGRVPQSVVDDEDSSLQTAMGASLDLQGLHRVANNAQQQYVR 289
Query: 462 TKPLPSKESIRRGK--DLPREGLHPMFKNVLEGGELMALAFSERLKAFRPKQTILEAEGE 519
++P PS ESI+R K DL GLHP+F + E GEL L + +K +R + TI E
Sbjct: 290 SRPAPSPESIKRAKELDLAELGLHPLFSSCFEEGELQRLRLVDSIKNYRTRTTIFEINAS 349
Query: 520 AARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKSMEKEVEPEADSLMAKEIKE- 578
+ + PSSQ +M+ KR K + Q+R + E AD +E+ +
Sbjct: 350 S------KDPSSQ---MMRAKRQRDRKAVASFQQRRQERQ-----EGPADPAPQRELPQE 395
Query: 579 --------------------------THGSKRKAKTF--KDEEYFISSVPTNHHMEAGLS 610
+ G+KR+ +D+E+++ P + E GLS
Sbjct: 396 EEEEMVETVEGVFTEVVGQKRPRPGPSQGAKRRRMETRQRDQEFYVPYRPKDFDSERGLS 455
Query: 611 VRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVK 670
V G ++ AVLDL+ D++ + + +Q WD++ K+++ G+ K +K
Sbjct: 456 VSGAGGAFEQQVAGAVLDLMGDEAQNMSRGQQQLKWDRKKKRFV----GQSGQEDKKKIK 511
Query: 671 TESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNAEETTSVPGGRHLGGNNRKFRGG 729
TESG + ++ K +Y+KWK++ +K+ + + EG + + P G ++ G
Sbjct: 512 TESGRFISSSYKRDLYQKWKQK--QKIDDRDSEEEGPSNQRGPGPRRGGKRGRSQ----G 565
Query: 730 KNQQR--SVPNAHVCSEIKDLDQVRKERQKKADRIAFMK 766
+Q R SVP + SE+K +Q+ K+R ++A + F++
Sbjct: 566 TSQPRASSVPAGRMRSELKTKEQILKQR-RQAQKQRFLQ 603
>gi|452824107|gb|EME31112.1| ATP-dependent RNA helicase [Galdieria sulphuraria]
Length = 763
Score = 390 bits (1002), Expect = e-105, Method: Compositional matrix adjust.
Identities = 251/748 (33%), Positives = 403/748 (53%), Gaps = 75/748 (10%)
Query: 5 SSKAELKRREKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVV 64
SS+ K++ ++K + G FESL L+ + ++ GY PTP+QRK +P +L G D +
Sbjct: 20 SSRDFSKKKAEKKHTVRPGSFESLGLNNALVSNLRHLGYSFPTPVQRKAIPPLLRGKDAI 79
Query: 65 AMARTGSGKTAAFLVPMLQRLNQHVPQG---------GVRALILSPTRDLALQTLKFTKE 115
MARTGSGKTAAFL+P L +L Q +G G+R +++SPTR+LA+QT F K+
Sbjct: 80 IMARTGSGKTAAFLLPTLNKLYQ---EGIGTSTKLVSGIRCVVISPTRELAMQTFGFFKK 136
Query: 116 LGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFD 175
+ T+L+ LLVGG+ ESQF LA NPD +IATPGRL+ L +V + L SVE +VFD
Sbjct: 137 YAKGTNLKACLLVGGEPFESQFAALATNPDALIATPGRLLQILDQVSYLRLHSVETIVFD 196
Query: 176 EADCLFGMGFAEQLHKIL--------GQLSENRQTLLFSATLPSALAEFAKAGLRDPHLV 227
EAD LF + +++ +S Q +L SATLP ALA+F + + DP L+
Sbjct: 197 EADRLFEGNLGKNTRQLVDLFFDSPSSGVSHTCQKMLVSATLPQALADFVQLNMLDPVLI 256
Query: 228 RLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE-------HISSDQ-------QTLIFV 273
RLD++ IS ++ LAFF +++EEK A+LLY+I + +SS+Q +T+IF+
Sbjct: 257 RLDLEQIISQNVALAFFGVQEEEKLASLLYLIMDVLPKLPTSVSSNQSSANGYPKTIIFL 316
Query: 274 STKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIP 333
+++H V+FL L + + + +G+ D ARK V R L+VTD+AARG+DIP
Sbjct: 317 ASRHQVDFLEQLLSSQNIPVAGIHGNKDSTARKRAVENLRNGHVPILLVTDLAARGLDIP 376
Query: 334 LLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAP 393
LD V+++D PP PK+FVHR GR RAG G + VT +D+ Y LDL LFLS+ A
Sbjct: 377 FLDVVVHFDMPPTPKLFVHRAGRTGRAGHFGVILALVTPDDLPYSLDLFLFLSREFHVAS 436
Query: 394 SEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCT 453
E + + ++ +Q++ + +YG P + + D +R I++S DL +
Sbjct: 437 EENQGIENIGD-----EQSLLDTSYVYGLLPSASVSPLVDTIRNDIETSTDLQYAIQAAK 491
Query: 454 NAFRLYSKTKPLPSKESIRRGKDL----PREGLHPMFKNVLEGGELMALA-FSERLKAFR 508
N Y + +P S SI+R K++ + +HP N L+ + + ++LK++R
Sbjct: 492 NGSEKYKRIRPCASSASIQRAKEMLAMYSKPWIHPWLMNSLQYNQCKTVENVVQQLKSWR 551
Query: 509 PKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKSMEKEVEPEA 568
P +++ + L+ + + ++ K A+ +++ ++ +K E EV +
Sbjct: 552 PHTAVVDPTFNNCKGS-LRNHNHEHENLQSKDEAL--SLLSSPSIRKWNKMGENEVGCKK 608
Query: 569 DS----LMAKEIKETHGSKRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEA 624
S L+AKE + S SS N+ E GLSV +G + L+
Sbjct: 609 MSHRQMLLAKERMQYSKS--------------SSRNVNYFREKGLSV-VQEGRMKDSLKD 653
Query: 625 AVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKATKT-- 682
++L +V DD + Q++ WD++ K+++ +N AS K+ ++ K T +
Sbjct: 654 SILSVVQDDPDAEESQRRRLLWDRKRKRFVHPSN-----ASSKLDHNDNNKKKNETDSIK 708
Query: 683 GIYKKWKERSHKKVYLKGASNEGNAEET 710
+ KW +S +V ++ E + E T
Sbjct: 709 SRFMKWLSKS--RVRIQAIGEEADPENT 734
>gi|312379831|gb|EFR25992.1| hypothetical protein AND_08228 [Anopheles darlingi]
Length = 803
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 205/453 (45%), Positives = 285/453 (62%), Gaps = 52/453 (11%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+++ LS V + I + GYKVPTPIQRKT+P+I+ G DVVAMA+TGSGKT +FL+PM ++
Sbjct: 39 FQAMGLSAPVLKGILKMGYKVPTPIQRKTIPIIMDGRDVVAMAKTGSGKTGSFLIPMFEK 98
Query: 85 LNQHVPQ--GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
L Q + GG RALILSPTR+LA+QT +F K+LGR+ DL+ L++GGDSM++QF +
Sbjct: 99 LRQREAKAGGGARALILSPTRELAIQTFRFIKQLGRFMDLKTILVLGGDSMDAQFAAVHT 158
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
PDII+ATPGR +H E+ D+ L SV+Y V DEAD LF MGF EQL L +L E RQ
Sbjct: 159 LPDIIVATPGRFLHLCVEM-DLKLGSVQYCVLDEADRLFEMGFGEQLSDTLKRLPEARQM 217
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
+LFSATLP + +FA AGL P LVRLDV++KI L L +
Sbjct: 218 VLFSATLPKMMVDFAMAGLCQPVLVRLDVESKIPEALALKY------------------- 258
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
T+IF T+HHVE ++++ + G+ S Y +D ARKI+ ++F RK L+V
Sbjct: 259 ------TVIFAGTQHHVELVSLILTKAGIPNSHVYSALDASARKINTAKFTMRKVNVLVV 312
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
TD+AARG+DIP LD VIN FP KPK+F+HRVGR ARAGR+G A+S +++D+A+L+DL+
Sbjct: 313 TDIAARGLDIPSLDYVINLHFPGKPKLFIHRVGRCARAGRSGVAYSIFSNDDIAHLIDLN 372
Query: 383 LFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSS 442
+FL +P+ +++ TI G P +++ V+E +
Sbjct: 373 MFLDRPLE----------------------VSDRATI-GIPPPEILETEHQLVQEYV-QH 408
Query: 443 ADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK 475
DL ++ R NA++ Y T+P S S +R K
Sbjct: 409 IDLATVFRVSNNAYKQYIVTRPAASASSNKRAK 441
Score = 44.3 bits (103), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 82/200 (41%), Gaps = 48/200 (24%)
Query: 500 FSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVD---VMKKKRAVHEKIINLVHQQRS 556
F R+K +RP TI E ++ + L + D + K KR + E +Q
Sbjct: 514 FLARMKNYRPSTTIFELNPKSNARELLAMTQKREHDEQKIAKHKRKLQEA------EQEE 567
Query: 557 SKSMEKEVEPEA----DSLMAKEIKETHGSKRKAKTFKDEEYFISSVPTNHHMEAGLSVR 612
S+ +E + A D +E K+ SKR+ + DEE+FI+ + E G +V
Sbjct: 568 SRKLEADAAETAVASGDQGHGQEAKKAKHSKRQRR---DEEHFIAYTAKDAVEEDGYAVD 624
Query: 613 SDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTE 672
S F + +A L +V D + G + +Q+ WD++ KK
Sbjct: 625 S---FA-RQANSAELSVVGDTADGQRMHRQLQKWDRKKKKM------------------- 661
Query: 673 SGAKVKATKTGIYKKWKERS 692
TG Y KWK+R+
Sbjct: 662 ---------TGRYDKWKDRT 672
>gi|118360242|ref|XP_001013358.1| Type III restriction enzyme, res subunit family protein
[Tetrahymena thermophila]
gi|89295125|gb|EAR93113.1| Type III restriction enzyme, res subunit family protein
[Tetrahymena thermophila SB210]
Length = 1130
Score = 387 bits (994), Expect = e-104, Method: Compositional matrix adjust.
Identities = 194/501 (38%), Positives = 310/501 (61%), Gaps = 18/501 (3%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FES+NL V++AIK +G+ +PTPIQRK +PLIL G DVVA +RTGSGKTAAF++P++ +
Sbjct: 301 FESMNLVYPVYKAIKTRGFNMPTPIQRKAIPLILEGRDVVACSRTGSGKTAAFIIPLINK 360
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L H G RALI+ PTR+LALQ K ++TDL +L+VGG +E QFE LA NP
Sbjct: 361 LQNHSRIVGARALIVVPTRELALQIASVLKTFIKFTDLTYTLIVGGHGLEGQFESLASNP 420
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
DIIIATPGRL + E D+SL VE+++FDE D LF MGFA+Q+ IL ++S+ RQTL+
Sbjct: 421 DIIIATPGRLSQLIDET-DLSLNKVEFLIFDECDYLFEMGFADQMKTILKKVSQQRQTLM 479
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P L+ FA+AGL++ V+LD + I+ ++ L F R EK A+L+Y+++ I
Sbjct: 480 FSATIPEELSSFARAGLKEYVFVKLDSEFTINENITLNFILTRNNEKIASLVYLLKSVIP 539
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
S++ +++F STK+HV+ + + + + YG MD ARK +S FR +K ++VTD
Sbjct: 540 SEENSIVFASTKYHVDLICAILDKFNISNVSIYGKMDAFARKDQISEFRNKKCNVMVVTD 599
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
+A+RGID+P ++NVI++D+P KIF+HR GR ARAGR G ++ + ++ Y+ ++ +
Sbjct: 600 LASRGIDLPNVNNVIHYDYPASTKIFIHRSGRTARAGRKGNTYALMGMNEIMYVSEIMVL 659
Query: 385 LSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSAD 444
+ + ++++ + IYG P +I +++ ++ +
Sbjct: 660 AGRKLS----------------NQVEDMKDTSKAIYGAIPVQLIGDEQAKIQILLKEDIE 703
Query: 445 LNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVLEGGELMALAFSERL 504
+N +Q+ NA+ ++K++ SK SI+ + + ++P+F E E + + ++
Sbjct: 704 INKMQQLANNAYIQFNKSRSSASKASIKDSYQVKIDSINPLFHKFAE-DEKEKMDYLSKI 762
Query: 505 KAFRPKQTILEAEGEAARSKH 525
K ++P + LE + + H
Sbjct: 763 KNYKPAISALEIYKQRSLKNH 783
>gi|156083018|ref|XP_001608993.1| DEAD/DEAH box helicase and helicase conserved C-terminal domain
containing protein [Babesia bovis T2Bo]
gi|154796243|gb|EDO05425.1| DEAD/DEAH box helicase and helicase conserved C-terminal domain
containing protein [Babesia bovis]
Length = 783
Score = 387 bits (994), Expect = e-104, Method: Compositional matrix adjust.
Identities = 256/724 (35%), Positives = 378/724 (52%), Gaps = 97/724 (13%)
Query: 15 KQKKKSK----SGGFESLNLSPNVFRAIKRK-GYKVPTPIQRKTMPLILSGADVVAMART 69
KQKKKS +G F L L + A++ K YK P+ IQR+T+P +L G DVV +ART
Sbjct: 10 KQKKKSNHEGGTGAFGLLGLDRTLCYALEHKLRYKQPSTIQRRTIPAVLQGRDVVCIART 69
Query: 70 GSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD----LRIS 125
GSGKTAA+L P++Q L H GVR LIL PTR+LALQ K+ +T LR +
Sbjct: 70 GSGKTAAYLAPVVQLLEGHSRTVGVRCLILLPTRELALQVSSVLKKFIAFTKRDDALRSA 129
Query: 126 LLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGF 185
L+GG+S+E QF L NPD+++ATPGRL H++E + + L V + V DEAD LF MGF
Sbjct: 130 TLIGGESVEGQFGALTFNPDLVVATPGRLSQHIAE-KSIDLTLVTHFVIDEADKLFEMGF 188
Query: 186 AEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFT 245
+++IL +L E RQT+L SATLPS L EF GLR+P + ++D D +I+ L+L F
Sbjct: 189 MPDVYRILSRLPEKRQTMLVSATLPSELTEFVNFGLRNPVIAQVDKDMQINEQLELRFIY 248
Query: 246 LRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDAR 305
R E+K A L ++R + ++T++FVSTKHHVEF L G+ S YG MD AR
Sbjct: 249 SRTEDKVATLCRLLRNS-NDTERTIVFVSTKHHVEFFRALLAATGITVSAVYGSMDMTAR 307
Query: 306 KIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGT 365
+ F++ KT L+VTD+AARG+D+PL+D VIN+DFP K+F+HRVGR ARAGR G
Sbjct: 308 SHQMGLFKSLKTRVLVVTDLAARGLDLPLVDCVINYDFPHSSKLFIHRVGRTARAGRQGL 367
Query: 366 AFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQ 425
A S VT D AY ++ + + + V+SK +Q + N G
Sbjct: 368 AISIVTMYDFAYAFEILTAIGRKM---------------VISK-EQIVGNEICAIGTVGD 411
Query: 426 TVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPR------ 479
I L+ + ++ II +D+ SL+ + ++ LY KT+P PSK +I R + L +
Sbjct: 412 --ITLLVENIKSIIQDDSDIKSLKMSMDASYNLYYKTRPNPSKNAIDRAQQLLKSMGGII 469
Query: 480 ---EGLHPMFKNVL--------EGGELMA-LAFSERLKAFRPKQTILEAEGEAARSKHLQ 527
+HP + + +G E + A E L FRP +A++ +
Sbjct: 470 AISNAVHPSYGSEATIAEPDHSDGTEENSKSAILEFLHGFRP---------SSAKTTIVT 520
Query: 528 GPSSQWVDVMKKKRAVHEKIINLVHQQRSSKSMEKEVEPEADSLMAKEIKETHGSKRKAK 587
+ + M+K + V ++ L S+ S+ +P D +
Sbjct: 521 SVPASSIATMEKAKMVSQQFRKL----DSTISVPGTTQPGEDPSL--------------- 561
Query: 588 TFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQK--QVYH 645
++ + S PTN L +L L++ D +QK + + H
Sbjct: 562 ----NDFLVPSAPTNVESHNEL-----------KLPQITLNITPDSEELMQKSRFQRKQH 606
Query: 646 WDKRGKKYIKLNNGERVSASGKVVKTESGAKVK--ATKTGIYKKWKERSHKKVYLKGASN 703
WD + KK++++ + + +V+K ESG K K G+ KKW + S K++ G
Sbjct: 607 WDPKKKKFVQVTVDQ---MTNRVIKNESGQKAKGGVENQGLLKKWMKTSRKRIQKLGEQE 663
Query: 704 EGNA 707
E A
Sbjct: 664 EYQA 667
>gi|209880309|ref|XP_002141594.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
gi|209557200|gb|EEA07245.1| DEAD/DEAH box helicase family protein [Cryptosporidium muris RN66]
Length = 939
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 183/367 (49%), Positives = 249/367 (67%), Gaps = 2/367 (0%)
Query: 20 SKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLV 79
+K G F + S + A++ GY +PTPIQR+ P IL+G DVVAMARTGSGKT AF++
Sbjct: 2 AKGGAFHTFGFSSPIIEAVRHIGYSLPTPIQRRCFPAILAGRDVVAMARTGSGKTIAFVL 61
Query: 80 PMLQRLN-QHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138
PMLQRL +H G+R LILSPTR+L LQT + ++ TD+RI L GG S++ QFE
Sbjct: 62 PMLQRLGCKHSTIVGIRGLILSPTRELVLQTYRVVRKFAIKTDIRICTLTGGSSLDRQFE 121
Query: 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198
L+ NPDI+IATPGRL HH+ E + +SL ++ +V DEAD LF G Q+ I+ +
Sbjct: 122 NLSGNPDIVIATPGRLCHHIVEAK-LSLSAICMIVLDEADRLFETGLMPQIDDIMKIIPA 180
Query: 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258
+RQ +L SAT+P+ L F++A L +P +RLD D IS LKL F R+++K A LLY+
Sbjct: 181 SRQCILVSATMPTGLVSFSRAKLVEPEFIRLDSDHLISDTLKLIFIFTREDDKLATLLYL 240
Query: 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
+R I +++ ++F +TKHHVE+L + E + YG+MDQDAR ++ FR KT
Sbjct: 241 LRVTIPHNERVMVFCATKHHVEYLAKILTECNINIGSIYGNMDQDARNAQLNSFRRNKTR 300
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
+IVTD+AARG+DIPLL+NVIN+D+P K+FVHR GR RAG+ G AFS VT+ D+ Y
Sbjct: 301 VMIVTDIAARGLDIPLLENVINFDYPLSAKLFVHRTGRTGRAGKMGKAFSLVTARDLPYT 360
Query: 379 LDLHLFL 385
+DL LFL
Sbjct: 361 VDLMLFL 367
Score = 47.8 bits (112), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 64/296 (21%), Positives = 127/296 (42%), Gaps = 50/296 (16%)
Query: 435 VREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREG---------LHPM 485
+ I+ +A++ +R+ T A+ LY K++P S+ES++R K L E +HP
Sbjct: 502 IDRILTENAEIERNRRSMTAAYALYLKSRPSSSRESVKRSKQLLDECGGASRLLMTVHPD 561
Query: 486 FKNVLEGGELMALAFSE-----RLKAFRPKQTILEAEGE---------------AARSKH 525
G++++ +E LK FRP + + + A + +
Sbjct: 562 LTRDTNSGDILSNLNTEDPMLFHLKKFRPTHSKVCPSNKLLIPDKNIGKVTLQSAIKMEK 621
Query: 526 LQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKSMEKEVEPEADSLMAKEIKETHGSKRK 585
L+ S D+ + + + ++ +++ +++ E ++ ++ ++ + G K
Sbjct: 622 LKISSQIGRDLSLTEDLDYRNLSEILEEEKINQNKELDIPKQSLAIHKRRNPCRSGQSSK 681
Query: 586 AKTFKDEEYFISSV--PTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQV 643
+K +++++FI + E+ LS+ EA+ D+ D+ L+K K V
Sbjct: 682 SKE-ENKQFFIPYKVDKISDIKESALSI-----------EASSFDINPDEDADLRKTKYV 729
Query: 644 YHWDKRGKKYIKLNNGERVSASGKVVK-TESGAKV--KATKTGIYKKWKERSHKKV 696
W+ K+Y + E G + K ESG V K G YKKW S+ K+
Sbjct: 730 RKWNAAKKRYQLIQKPE----PGSIKKHNESGVIVRGKLKCQGQYKKWMANSNMKI 781
>gi|399217305|emb|CCF73992.1| unnamed protein product [Babesia microti strain RI]
Length = 903
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 258/733 (35%), Positives = 385/733 (52%), Gaps = 95/733 (12%)
Query: 15 KQKKKSKSGGFESLNLSPN-VFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGK 73
K+ + K G F L LS + +F KR ++ P+PIQRK +P +L+ D++ +ARTGSGK
Sbjct: 64 KKHSEGKKGPFGMLGLSEDLIFSLEKRLKFRQPSPIQRKVIPHVLNARDILCLARTGSGK 123
Query: 74 TAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSM 133
T ++L P++QRLN H + G R LI+ PTR+L+LQ +K ++L DL+I+ L+GG +
Sbjct: 124 TISYLAPIVQRLNCHSTRVGSRCLIILPTRELSLQIVKVLRKLMVKNDLKIACLIGGQGI 183
Query: 134 ESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKIL 193
E+QF LA NPDI+IATPGRL HHL E + + L VE V DEAD L GF ++KI+
Sbjct: 184 ETQFSALANNPDILIATPGRLAHHLVE-KSLQLVRVEIFVLDEADKLCEDGFLPHIYKIV 242
Query: 194 GQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHA 253
QL NRQT++ SATLP+ +AEF K L+DP L LD D ++S DL++ F + + K
Sbjct: 243 SQLPANRQTIVVSATLPTEVAEFTKFNLKDPFLANLDKDHQLSDDLRVDFLYVPSDFKIP 302
Query: 254 ALLYMIREHI-----------SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQ 302
AL Y I + ++ T++FV+T+HHVEF +LF L+ S YG MD
Sbjct: 303 AL-YKIANKLKKEGILEMPLFNAQHYTIVFVATRHHVEFFKLLFDLSHLKASYVYGSMDM 361
Query: 303 DARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGR 362
R ++ F KT FLIVTDVAARG+DIP+++NVIN+DFP PK+F+HR GR ARAGR
Sbjct: 362 SLRMQQMANFSNSKTNFLIVTDVAARGLDIPIVNNVINFDFPYSPKLFIHRAGRTARAGR 421
Query: 363 TGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSE-EEVLLDMDGVMSKIDQAIANGETIYG 421
TG A S VT +++++ +L LFL K I A E + LL G + ++D +
Sbjct: 422 TGVAVSLVTLQELSFTTELELFLGKKIEIARKELKSCLL---GSIGRLDNEM-------- 470
Query: 422 RFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLP--- 478
+ V +I + +L L+R+ A LY KT+P+PS+ S+ K L
Sbjct: 471 -----------EYVESVIACNVELQHLRRSMNAALNLYYKTRPMPSRNSVINAKKLIASC 519
Query: 479 ------REGLHPMFKNVLEGGELMALAFSERLKAFRPKQTILEAEG-EAARSKHLQGPSS 531
HP + + L + + F + L FRP++T + + EA H
Sbjct: 520 GGLPILNRSTHPYWCD-LTDADSDNVEFLKALNKFRPEKTRMAVKACEAFEKYHNINNYM 578
Query: 532 QWVDVMKKKRAVHEKIINLVHQQRSSKSMEKEVEPEADSL------MAKEIKETHGSKRK 585
Q + K+ + + L RSS E++ D+L + + I+ T+G+
Sbjct: 579 QEI----KRTGGNSDGMGLEIVTRSSDVSSDEIKINHDTLDDDRSYLDRLIQITNGN--T 632
Query: 586 AKTFKDEEYFISSVPTN----HHMEAGL-------------SVRSDQGFGLN-------R 621
A + S+ + + +E GL S+ S N R
Sbjct: 633 ADVISNINSINKSIAVSKRAKNRLEKGLPLFQNNNRRHVTKSLISSTSSNCNYARKCAMR 692
Query: 622 LEAAVLDLVADDSGGLQKQK--QVYHWDKRGKKYIK--LNNGERVSASGKVVKTESGAKV 677
L L++ D LQ+++ Q WD + +K+ + ++N + +V K ESG KV
Sbjct: 693 LPDMTLNINPDAERDLQRKRYSQKTRWDPKKRKFTQNIVDN-----LTKEVYKNESGVKV 747
Query: 678 KATKT--GIYKKW 688
+ G+ KKW
Sbjct: 748 RGEMQCKGLLKKW 760
>gi|300122776|emb|CBK23793.2| unnamed protein product [Blastocystis hominis]
Length = 419
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 186/391 (47%), Positives = 260/391 (66%), Gaps = 25/391 (6%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTG-- 70
R + KSG F+ + +S V I + G+K+PTPIQR T+P L G DVV MARTG
Sbjct: 40 RTAKSSAKKSGTFQKMGVSKPVLAGIVKLGFKIPTPIQRATIPTALKGKDVVVMARTGKT 99
Query: 71 ---------SGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121
SGKTAAFL+PM+++L +H GGVR ++LSPTR+LA Q+ + +L YT+
Sbjct: 100 SIQWDDCIGSGKTAAFLIPMVEKLKEHHLTGGVRGIVLSPTRELAYQSYRVFNKLSHYTN 159
Query: 122 LRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181
LR +LVGG+++ESQFE ++++PD+I ATPGRLMH L EV D SL S
Sbjct: 160 LRSCILVGGEAIESQFESISKHPDVIFATPGRLMHMLLEVPDFSLSS------------- 206
Query: 182 GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKL 241
+GFA QL+ I G+L NRQ++L SATLP L EF++AGL DP +VRLD+D+K+SP+L
Sbjct: 207 -LGFAPQLNDITGRLPVNRQSMLVSATLPPILLEFSRAGLHDPEIVRLDIDSKLSPNLCS 265
Query: 242 AFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMD 301
FF +R EEK AALL+++ I + Q LIFV+T+ H E++ + G+ YG M+
Sbjct: 266 TFFLVRPEEKTAALLFLMHRVIPNVQGVLIFVATRFHAEYITSILNHTGISTVCIYGTME 325
Query: 302 QDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAG 361
AR +++++FR K L+VTDVAARG+DIPL++ VI++D P PK++VHR GR AR G
Sbjct: 326 MTARTMNLAQFRDNKVPVLVVTDVAARGLDIPLVNTVIHFDCPTSPKLYVHRTGRTARGG 385
Query: 362 RTGTAFSFVTSEDMAYLLDLHLFLSKPIRAA 392
R GT+ F T ++ Y+LD+ LFL++P+ A
Sbjct: 386 REGTSVVFATVAEIPYILDVALFLNQPLETA 416
>gi|219116929|ref|XP_002179259.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217409150|gb|EEC49082.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 476
Score = 380 bits (977), Expect = e-102, Method: Compositional matrix adjust.
Identities = 195/462 (42%), Positives = 298/462 (64%), Gaps = 29/462 (6%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F++L LS V++ I R G+++PTP+QRK++P++L+G D V MARTGSGKT AFL+P+L++
Sbjct: 16 FKALGLSDEVYKGIIRMGFRMPTPVQRKSLPVVLTGVDTVVMARTGSGKTCAFLIPLLEK 75
Query: 85 LNQHVPQG----GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
L P+G VR +ILSPTR+L+ QTL+ +L TD+R + GG+ ME QF +L
Sbjct: 76 LLD-TPKGQNGNHVRGVILSPTRELSQQTLRVMNKLAADTDIRSIGIHGGEGMEKQFNQL 134
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
A PD+IIATPGRL HHLSE+ D L + DEAD L MGF+ Q+ +I + E
Sbjct: 135 ASKPDVIIATPGRLAHHLSEIPDFKLAGCAMCILDEADRLLEMGFSMQIRQIARSMPETC 194
Query: 201 QTLLFSATLPSALAEFAKAGLR-DPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI 259
Q ++ SAT+P L EF K+G DP +VRLD + +S +L++AF T R +K AALL+++
Sbjct: 195 QKVMLSATMPKVLVEFTKSGFAVDPAVVRLDQEASVSEELRIAFITCRSLDKDAALLHVL 254
Query: 260 REHISSDQQ---------TLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVS 310
HI DQ+ +LIF +T+HHVE++ L G + + YG +DQ+ARKI+++
Sbjct: 255 -HHIKEDQEEHADSRTGLSLIFAATRHHVEYVTTLLIAAGFDAVMIYGTLDQEARKINLA 313
Query: 311 RFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFV 370
FR+ K L+ TDVAARGID+PL+D+VI++ FP PK+FVHR GRAARAGR G + +
Sbjct: 314 AFRSGKRPILVTTDVAARGIDVPLIDHVIHYHFPSSPKLFVHRSGRAARAGRIGYCWGLI 373
Query: 371 TSEDMAYLLDLHLFLS-KPIRA-APSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVI 428
+++ Y+++LHLFL KP+ A +++ ++ ++++ + + YG P++++
Sbjct: 374 EPDELPYMIELHLFLGRKPMSAEQKTDDGKTIETTYTLNEMSPDMVH----YGCVPESIL 429
Query: 429 DLVSDRVREIIDS-------SADLNSLQRTCTNAFRLYSKTK 463
+ + V+ I+DS + L +L + C NA + Y +T+
Sbjct: 430 TMEVENVQRIMDSELSGSLEAESLRALTKVCKNAMKQYRRTR 471
>gi|392575556|gb|EIW68689.1| hypothetical protein TREMEDRAFT_39597 [Tremella mesenterica DSM
1558]
Length = 721
Score = 363 bits (932), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 246/720 (34%), Positives = 393/720 (54%), Gaps = 90/720 (12%)
Query: 11 KRREKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGA--DVVAMAR 68
+ R + + K ++ L ++ ++ ++ +G+K PTPIQ+ T+PL L+ DV+ MAR
Sbjct: 22 RSRSQAPIRLKDSQWQRLGVNQSLIHSLLLRGFKSPTPIQKSTLPLTLASPPRDVLGMAR 81
Query: 69 TGSGKTAAFLVPMLQRLNQH-VPQGGVRALILSPTRDLALQTLKFTKELGR--------- 118
TGSGKT A+L+P+LQRL+ VP ++ALIL P+R+LA+Q LK K+L R
Sbjct: 82 TGSGKTLAYLIPLLQRLSSSAVPVPSIKALILCPSRELAVQILKAGKDLARGLRKEPLKN 141
Query: 119 YTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178
LR ++++GG+S++ FE L+ PD+++ATPGR++H + E+ + L+++E V++DEAD
Sbjct: 142 EQPLRWAIIMGGESLDDHFEVLSGKPDVVVATPGRMLHLIVEMS-LDLRTLEMVIYDEAD 200
Query: 179 CLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPD 238
LF MGF QL +IL +L RQ+LLFSATLP+ +AEFAKAGL +P ++RLD + IS D
Sbjct: 201 RLFEMGFESQLREILHRLPSTRQSLLFSATLPTKVAEFAKAGLVNPSMIRLDAEQTISAD 260
Query: 239 LKLAFFTLRQEEKHAALLYMIREHIS--------SDQQTLIFVSTKHHVEFLNVLFREEG 290
L+L F ++ +K AA+L ++ + Q +IFV+TKHHVE+L L R G
Sbjct: 261 LRLHFAYVKPADKDAAVLALLGVLLGKSGPSSPEGSSQIIIFVATKHHVEYLVCLLRAAG 320
Query: 291 LEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIF 350
E + YG +DQ ARK + FRA + L+VTDVAARG+DIP++ NVIN+DFP + F
Sbjct: 321 YESAYIYGSLDQVARKTQIDSFRAGRQQILVVTDVAARGLDIPMIGNVINYDFPTGVRGF 380
Query: 351 VHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLS-KPIRAAPSEEEVLLDMDGVMSKI 409
VHRVGR ARAGR G A+S VT+ D+A+L DL LS K A+P
Sbjct: 381 VHRVGRTARAGRRGMAWSLVTTGDIAHLFDLDEALSVKIFDASP---------------- 424
Query: 410 DQAIANGETIYGRFPQTVIDLVSDRVR-EIIDSSADLNSLQRTCTNAFRLYSKTKPLPSK 468
+ GR PQ V++ +R+ + +S L +L+ ++ ++K S
Sbjct: 425 --------PLIGRLPQQVLETHRERIAVGLAESDRSLAALRMVKDRGQAMFERSKSRASA 476
Query: 469 ESIRRGKDLPREG--------------LHPMFKNVLEGGELMALAFSERLKAFRPKQTIL 514
++ R K R HP N L A ++ +RP+ ++
Sbjct: 477 DAHRMSKLWIRSSHDGSDLAVLPVFVTSHPAVANERCDDLLRA------IETYRPRTSVG 530
Query: 515 EAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKSMEKEVEPEADSLMAK 574
++ + S V V K +RA +V + R + + + S +
Sbjct: 531 KSSSRVS--------SKAVVAVSKLERA------TVVSEYRQGSADFVPLGALSRSSTNE 576
Query: 575 EIKETHGSKRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDS 634
+ T S R ++++ E+F+ + E S+ F ++L +A ++ AD+
Sbjct: 577 RVFLTVPSSR--SSYRNSEFFLPHAREDAQHEKTYSINGADCFS-SQLRSATFNMSADEG 633
Query: 635 --GGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKER 691
LQK Q+ WD+R KK+++ ++ + S + ++V++ESGA + A+ +G ++ W R
Sbjct: 634 PRPRLQKASQL-RWDRRKKKFVQESSID--STNQRMVRSESGALLPASFSSGRFRDWSTR 690
>gi|323449287|gb|EGB05176.1| hypothetical protein AURANDRAFT_72308 [Aureococcus anophagefferens]
Length = 1379
Score = 362 bits (928), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 263/762 (34%), Positives = 391/762 (51%), Gaps = 112/762 (14%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K GGF+ L L ++ + + Y PTP+QR+ +P+ LSG DVV A G
Sbjct: 552 KCGGFQGLGLDASLLKGVLAM-YSQPTPVQREVLPVALSGRDVVCQAFRADGNEDPV--- 607
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT------DLRISLLVGGDSME 134
A ILSPTR+LALQT +F ++ ++ + LVGG+++E
Sbjct: 608 ---------------ACILSPTRELALQTYRFASKMSKFCLGMDGRQFSQAALVGGEAVE 652
Query: 135 SQFEELAQNPDIIIATPGRLMHHLSE--VEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
+QF+ L++ P +IATPGRL H L E + ++L VFDEAD LF MGFA QL +
Sbjct: 653 AQFDTLSRRPATLIATPGRLAHLLQEAPLSLITLARCRVAVFDEADRLFEMGFALQLRLL 712
Query: 193 LGQLSE-NRQTLLFSATLPSALAEFAKAGLRDP-HLVRLDVDTKISPDLKLAFFTLRQEE 250
L + E RQTLLFSAT+P LA+FA+AGLRD LVRL+ + ++S L+LAFFT R E
Sbjct: 713 LDAMPEITRQTLLFSATMPRLLAQFARAGLRDNVALVRLEAEARLSETLRLAFFTTRTAE 772
Query: 251 KHAALLYMIREHI-SSDQQTLIFVSTKHHVEF-LNVLFREEGLEPSVC-YGDMDQDARKI 307
K AAL IR I +S++ T++FV+T+HH E L V+ +P+ YG MDQ+AR
Sbjct: 773 KPAALCAAIRNIIPNSNELTIVFVATRHHCELILAVVTAAFPSQPAAAIYGAMDQEARTT 832
Query: 308 HVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAF 367
H+ FR T LIVTDVAARG+D+PL+DNVIN+ P ++FVHR GRAAR GR G A
Sbjct: 833 HMRDFRRGVTRMLIVTDVAARGLDVPLVDNVINYHMAPASRLFVHRCGRAARQGRPGVAL 892
Query: 368 SFVTSEDMAYLLDLHLFLSK-PIRAAPSEEEVLLDMDGVMSKIDQAI-----ANGETI-- 419
S V E++ Y+LDLH L + P A + + D + + A+ A G T
Sbjct: 893 SLVDPEELPYMLDLHTLLDRVPADACGPQPQERQDDHTIKVSLPSALLSYTRAEGWTPDG 952
Query: 420 --YGRFPQTVIDLVSDRVREIIDSSAD----LNSLQRTCTNAFRLYSKTKPLPSKESIRR 473
YG Q ++DL R + +S + L +L R NA + Y KT+P SK +
Sbjct: 953 IHYGNIRQALLDL---EARTLAVASQNDGGLLLALTRVADNAMQQYRKTRPAASKRAATH 1009
Query: 474 GKDLPREGLHPMF----KNVLEGGELMALAFSE--------RLKAFRPKQTILEAEGEAA 521
K + LHP+F ++ + E + F + RL ++RP Q+ILE + A
Sbjct: 1010 AKIIRLTELHPLFLGTIRSAISTDETASAHFLDRDNCVLRARLSSYRPNQSILEMKLTTA 1069
Query: 522 RSKH-LQGPSSQWVDVMKKKRAVHE-----KIINLV---HQQRSSKSMEKEVEPEADSLM 572
+ + Q + + D + +K+A+ + + + L H ++ + + VE D M
Sbjct: 1070 KDESACQEAAKVFRDAVIRKKALQDGRAKSQALALQAKEHGSNTAMNTVRLVEEPLDDTM 1129
Query: 573 AKEIKETHGSKRKAKTFKDEEYFISS---VPTNHHMEAGL-SVRSD-------------- 614
E TH + K + K E + S NH + L S R+D
Sbjct: 1130 VNE--GTHDVRPKRRISKAERKALKSGDRYDANHDQSSKLESFRADAYIEYGNTRAAEID 1187
Query: 615 -------------QGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGER 661
G G + LE+A+LD+ DD+ + +++ +Y WD R +KYI+ +
Sbjct: 1188 ELLDDHRQKDDSASGAGTSMLESALLDIAPDDALDMIRKRSMYRWDSRKRKYIQSTVADL 1247
Query: 662 VSAS----GKVVKTESG----AKVKATKTG-IYKKWKERSHK 694
+ + K +KTESG V A +G +Y++W +++ +
Sbjct: 1248 LDGTKQRGNKKLKTESGKTVSGAVAAASSGEMYRRWYDKNRR 1289
>gi|145473681|ref|XP_001462504.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124430344|emb|CAK95131.1| unnamed protein product [Paramecium tetraurelia]
Length = 706
Score = 360 bits (925), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 225/661 (34%), Positives = 358/661 (54%), Gaps = 66/661 (9%)
Query: 16 QKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTA 75
Q K KSGGFES+ L P ++RAIK +G+ VPTPIQRK +P IL+G D+VA ++TGSGKTA
Sbjct: 3 QTKVKKSGGFESMGLIPELYRAIKSQGFNVPTPIQRKAIPQILAGRDIVACSKTGSGKTA 62
Query: 76 AFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMES 135
AFL+P++ +L H G+R LIL PTR+LALQ K L +++D++ S++VGG E
Sbjct: 63 AFLIPLINKLQNHSTVVGIRGLILLPTRELALQIASVLKALLKFSDIQYSIMVGGHGFEG 122
Query: 136 QFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQ 195
QFE LA NPDI+I TPGR++ HL E + + L V+ V++DEAD LF MG A+QL +IL
Sbjct: 123 QFESLASNPDILICTPGRVLQHLLE-DRLKLSRVQMVIYDEADFLFEMGLADQLKQILSH 181
Query: 196 LSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAAL 255
L +Q+L+FSAT+P L+ FA GL+D +LD + ++ ++L F + K +AL
Sbjct: 182 LPSQKQSLMFSATIPEQLSMFASVGLKDYIFCKLDKEFQLPDSMQLHFLFAANDNKLSAL 241
Query: 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRAR 315
+Y+IR S D LIF ST+ V+ L+ + + YG MDQ RK + F+
Sbjct: 242 IYLIR---SLDDTCLIFASTRFLVDMLSYALNKFHISNVHVYGKMDQLDRKEQLDNFKRN 298
Query: 316 KTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDM 375
+ LIVTD+A+RGID+P + NVI++D+P PKIF+HR GR ARAG+ G ++ ++SE++
Sbjct: 299 QVKVLIVTDLASRGIDLPFVANVIHYDYPSNPKIFIHRSGRTARAGKAGYVYALISSEEI 358
Query: 376 AYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRV 435
Y+ + +++ + L +G S D ++ + YG P I+L+
Sbjct: 359 LYIKETMIYVGRK-----------LVNEGDFS--DPSL----SFYGHMP---IELLMQNQ 398
Query: 436 REIIDSSADL--NSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVLEGG 493
++ D + D+ + + T A + KT+ K L +HP+FK+ ++
Sbjct: 399 EKLNDLNDDIEFQNYKEIATRANEKFRKTRGSAKKVKTNIDTSL----VHPLFKDKIQVE 454
Query: 494 ELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQ 553
E + +K F+ Q+++E + + K P + V +K V +
Sbjct: 455 EDTKDMLKQ-IKNFKSAQSVIEIKKFESNQK--SDPFMKAVSHLKD-----------VQK 500
Query: 554 QRSSKSMEKEVEPEADSLMAKEIKETHGSKRKAKTFKDEEYFISSVPTNHHMEAGLSVRS 613
++ +E + +P++ ++ + F D+++FI PT
Sbjct: 501 RKPLPKIELKEQPKSLNI---------------ENFMDQKFFI---PTQRDPTKKSEFED 542
Query: 614 DQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTES 673
L + V ++D + L+K+KQ+ WDK KKY+ ++ + +K E
Sbjct: 543 LHKITLEDINPFV---ISDGTDALRKRKQMV-WDKDKKKYVNPKAAQQQDKEDRGMKVEK 598
Query: 674 G 674
G
Sbjct: 599 G 599
>gi|379699004|ref|NP_001243975.1| ATP-dependent RNA helicase DDX54-like protein [Bombyx mori]
gi|373882595|gb|AEY78647.1| ATP-dependent RNA helicase DDX54-like protein [Bombyx mori]
Length = 605
Score = 360 bits (923), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 176/338 (52%), Positives = 247/338 (73%), Gaps = 7/338 (2%)
Query: 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPML 82
G F+S+ LS V + I ++GYK PTPIQRKT+P+ L+G DVVAMARTGSGKTA F++P+L
Sbjct: 37 GAFQSMGLSFPVLKGITKRGYKQPTPIQRKTIPIALTGKDVVAMARTGSGKTACFVLPIL 96
Query: 83 QRL----NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138
++L N+ P +RALILSPTR+LALQTL+F +ELG++T L + ++GG+S+E QF
Sbjct: 97 EKLLVPNNKPTPGKNLRALILSPTRELALQTLRFVRELGKFTGLTSAAILGGESIEQQFN 156
Query: 139 ELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS 197
++ +PDI++ATPGR +H E+ + L +++ VVFDEAD LF +GF EQL +I +L
Sbjct: 157 VMSGSSPDIVVATPGRFLHICIEM-CLKLDNIKIVVFDEADRLFELGFGEQLQEICARLP 215
Query: 198 ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLY 257
+RQTLLFSATLP L EFA+AGL DP L+RLDVD K+ L L + ++R E K AALL
Sbjct: 216 SSRQTLLFSATLPKMLVEFARAGLSDPTLIRLDVDWKLPSTLWLGWISVRAELKTAALLI 275
Query: 258 MIREHIS-SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK 316
++ + ++ + Q ++F +TKHHVE+L+++ ++ G+ + Y +D ARKI + RF +K
Sbjct: 276 LLDKVLTPTTPQAVVFAATKHHVEYLHLILQQAGISSTYAYSGLDPSARKIALGRFTNKK 335
Query: 317 TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRV 354
LIVTDVAARG+D+P LD VIN++FP KPK+FVHR
Sbjct: 336 CSVLIVTDVAARGLDLPALDTVINYNFPAKPKLFVHRT 373
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 84/176 (47%), Gaps = 26/176 (14%)
Query: 592 EEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGK 651
+E +I ++ H E G++V G E A L+L AD + Q+ V WD++ K
Sbjct: 434 DENYIPHQASDQHTETGMAVNFSAG-----AEHAQLELRADSGDAERAQRNVMRWDRKRK 488
Query: 652 KYIKLN-NGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNAEE 709
K + ++ +G R K+++TESG +V A+ ++G + WK+R+ + + +E A+
Sbjct: 489 KMVHVDPDGGR-----KMIRTESGFRVPASFRSGRFDDWKKRNLAHDH---SDDEPQAQT 540
Query: 710 TTSVPGGR---HLGGNNRKFRGGKNQQRSVPNAHVCSEIKDLDQVRKERQKKADRI 762
P H +N + + +S E +D Q+ KER +K D+I
Sbjct: 541 NKRKPASEFRPHWVKHNERVAKKAAESKS-------REFRDKQQIVKERMRK-DKI 588
>gi|71027139|ref|XP_763213.1| ATP-dependent RNA helicase [Theileria parva strain Muguga]
gi|68350166|gb|EAN30930.1| ATP-dependent RNA helicase, putative [Theileria parva]
Length = 839
Score = 359 bits (921), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 248/740 (33%), Positives = 387/740 (52%), Gaps = 84/740 (11%)
Query: 17 KKKSKSGGFESLNLS-PNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTA 75
K+ + G F +L L P KR Y P+ IQRKT+P IL+G+DV+ +ARTGSGKT
Sbjct: 3 KENAGLGPFGTLGLKKPICLTLQKRLRYDQPSAIQRKTIPHILAGSDVLCIARTGSGKTV 62
Query: 76 AFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD----LRISLLVGGD 131
A++ P++Q L+ H P GVR LIL PTR+LALQ K+ +++ LR+SLL+GG
Sbjct: 63 AYIAPIVQLLDFHSPVVGVRCLILLPTRELALQVEGVLKKFVNFSNQDDALRVSLLIGGK 122
Query: 132 SMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHK 191
S+ESQF L+ NPDI+IATPGRL++HL E + ++L + ++V DEAD LF MGF ++K
Sbjct: 123 SVESQFGSLSFNPDIVIATPGRLVYHL-EQKSLTLSLLTHLVIDEADKLFEMGFLPDVYK 181
Query: 192 ILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEK 251
+ L + +Q +L SATLP+ L+EF GL +P L +LD D I+ L+++F R EEK
Sbjct: 182 VFAYLPKIKQVILVSATLPTQLSEFVSFGLNEPVLAKLDQDQHINEQLQMSFIFSRNEEK 241
Query: 252 HAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSR 311
+ LL ++ +H D +T++FV+T+HHVEF L + G S YG MD D R I +SR
Sbjct: 242 ISVLLRLLAKH--KDLKTIVFVATRHHVEFFRTLLLKLGYSISCVYGTMDMDNRVIEMSR 299
Query: 312 FRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVT 371
FR+ KT L+VTDVA+RG+DIPL+D VIN+DFP K+F+HRVGR ARAGR G A S VT
Sbjct: 300 FRSNKTRILLVTDVASRGLDIPLVDLVINFDFPYSTKLFIHRVGRTARAGRQGLAVSIVT 359
Query: 372 SEDMAYLLDLHLFLSK----PIRAAP-----SEEEVLLDMDGVMSKIDQA---------I 413
++D ++LL + L+K PI A S+ DGV + I
Sbjct: 360 NKDFSFLLQILYKLNKTLLLPISNASNTGNNSDSSANTMADGVNTHTHNTNNISGEVIII 419
Query: 414 AN----GETIYGRFPQT------------VIDLVSDRVREIIDSSADLNSLQRTCTNAFR 457
N E G +I+ V++++ E + SA S+Q N++
Sbjct: 420 KNDKLFNEAFVGELDNNYCVIGSCHDLNHLIETVNNKISEDPELSAQFRSMQ----NSYN 475
Query: 458 LYSKTKPLPSKESIRRGKDLPREGLHPMFKNVLEGGELMALAFSERLKAFRPKQT--ILE 515
LY KT+P P+ I+ F + L+ L L+ T I++
Sbjct: 476 LYYKTRPSPTHNFIQHSN---------QFFQLYSSQFLLHLFHPNYLQTTNHTNTTKIVD 526
Query: 516 AEGEAARSKHLQGPSSQWVDVMKKKRAVHEKII------NLVHQQRSSKSMEKEVEPEAD 569
+E ++ +++ + + EKI+ + ++ ++ K P +
Sbjct: 527 SENTDNTVGNVDNGKEEYLQYLSNYKP-DEKIVQNNISLDSINYMKNFKLYNISSTPNTN 585
Query: 570 SLMAKEIKETHGSKRKAKTFKDEEYFISSVPTNHHMEAGLS------VRSDQGFGLNRLE 623
+ + K + ++ ++ I+S N + V+ D + E
Sbjct: 586 N-----TQNIVDGKNDTTSVENSKFNITSTTINGENAMNIKEKDERLVKDDDKNEIYE-E 639
Query: 624 AAVLDLVADDSGGLQKQKQVYH--WDKRGKKYIKL-----NNGERVSASGKVVKTESGAK 676
+ VLD+V D+ ++K++ + W++R KK+ + NN + +S K K G
Sbjct: 640 SMVLDMVPDNEDLIKKKRYMTKEVWNRRTKKFQHVTVDLYNNNKIISKPTKGTKDNHGGS 699
Query: 677 VKATKTGIYKKWKERSHKKV 696
K ++KKW +++ +++
Sbjct: 700 SGKDK-NLFKKWIKKTSRRI 718
>gi|406695006|gb|EKC98321.1| hypothetical protein A1Q2_07335 [Trichosporon asahii var. asahii
CBS 8904]
Length = 690
Score = 359 bits (921), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 241/698 (34%), Positives = 381/698 (54%), Gaps = 122/698 (17%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGA--DVVAMARTGSGKTAAFLVPML 82
+++L ++P++ RA++ +G+K PTPIQR ++PL +S DV+ MARTGSGKT A+L+P+L
Sbjct: 35 WQALGVAPSLVRALQLRGFKTPTPIQRASIPLTISNPPRDVLGMARTGSGKTLAYLIPLL 94
Query: 83 QRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGR--------YTDLRISLLVGGDSME 134
RL G+RALI+ P+R+LA+Q LK K+L R LR SL++GG+S++
Sbjct: 95 HRLGFRREGAGIRALIMCPSRELAVQILKAGKDLSRNLATGVSDAQPLRWSLVMGGESLD 154
Query: 135 SQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILG 194
+QFE + PDI LF MGF +QLH+IL
Sbjct: 155 AQFESIVSRPDI---------------------------------LFEMGFEQQLHEILH 181
Query: 195 QLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAA 254
+L NR +LLFSATLPS+LAEFAKAGL +P VRLD D +I+PDL L FF ++ +EK A
Sbjct: 182 RLPVNRHSLLFSATLPSSLAEFAKAGLNNPEFVRLDSDMRINPDLDLGFFHVKPDEKDAG 241
Query: 255 LLYMIRE---------HISSDQ-QTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDA 304
LL ++R+ I +D+ + +IF STKHHVE+L+VL + G S YG +DQ A
Sbjct: 242 LLLLLRDVLKIPSRAASIDADRAKAIIFASTKHHVEYLSVLLQAAGYRVSYIYGSLDQVA 301
Query: 305 RKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTG 364
R+ + RFRA +T L+VTDVAARGIDIP + +VIN+DFP ++FVHRVGR ARAG+ G
Sbjct: 302 RQQQLKRFRAAETDLLVVTDVAARGIDIPSIPHVINYDFPTGVRVFVHRVGRTARAGQHG 361
Query: 365 TAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFP 424
A++ VT +D+ Y+ DL +FL E + L D + YG P
Sbjct: 362 HAWTLVTRDDLPYMRDLEIFL---------ERDFLKDKES---------------YGNLP 397
Query: 425 QTVIDLVSDRVREIID-SSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREG-- 481
+ ++ + + V++ +D + L SL+ ++ +++ +K++ + K++ G
Sbjct: 398 RDSLETMLEYVQQTLDIEESQLPSLREVMRRGQTMFERSRAKANKDAYKYVKEISASGGP 457
Query: 482 --LHPMFKNVLEGGELMALAFSERL---KAFRPKQTILEAEGEAARSKHLQGPSSQWVDV 536
+HP+F + +L A + L +A++P +TI E AR K +
Sbjct: 458 SLVHPVFSSNEAPSDLQAAGRDKLLASIEAYQPHETIFEI---GARGKQAAA------QL 508
Query: 537 MKKKRAVHEKIINLVHQQRSSKSMEKEVEPEADSLMAKEIKETHGSKRKAKTFKDEEYFI 596
MK++R + + ++RS ++ + D+ M + + K +
Sbjct: 509 MKQRR-------DTIARRRSQRASAPD-----DNAMDLDDSDIDTEKPLPRAI------- 549
Query: 597 SSVPTNHHMEAGLSVRSDQGFGL-NRLEAAVLDLVAD--DSGGLQKQKQVYHWDKRGKKY 653
++ + ++ +G +G + +A LDL AD D+ QK Q+ WD++ K++
Sbjct: 550 -AILISIYLRSGWKRTEREGTTFAEQARSATLDLNADEGDAARAQKASQL-KWDRKRKRF 607
Query: 654 IKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKE 690
+K G + K++++ESGA + AT K+G + WK+
Sbjct: 608 VKDAPG---GDNKKMIRSESGALLPATFKSGKFADWKK 642
>gi|85000347|ref|XP_954892.1| ATP-dependent (RNA) helicase [Theileria annulata strain Ankara]
gi|65303038|emb|CAI75416.1| ATP-dependent (RNA) helicase, putative [Theileria annulata]
Length = 811
Score = 358 bits (920), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 237/735 (32%), Positives = 377/735 (51%), Gaps = 111/735 (15%)
Query: 23 GGFESLNLSPNVFRAIKRKG-YKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPM 81
G F +L L+ + +++K Y P+ IQR+T+P +L+G+DVV +ARTGSGKT A++ P+
Sbjct: 9 GSFGTLGLNKPICLTLQKKFRYDQPSAIQRRTIPHVLAGSDVVCIARTGSGKTVAYISPI 68
Query: 82 LQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD----LRISLLVGGDSMESQF 137
+Q L H GVR LIL PTR+LALQ K+ +++ LR+ LL+GG S+ESQF
Sbjct: 69 VQLLEAHSSVVGVRCLILLPTRELALQVEGVLKKFVNFSNQSDALRVVLLIGGKSVESQF 128
Query: 138 EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS 197
L+ NPDI+IATPGRL++HL E + +SL V ++V DEAD LF MGF ++K+ L
Sbjct: 129 GALSFNPDIVIATPGRLVYHL-EQKSLSLSLVTHLVIDEADKLFEMGFLPDIYKVFAHLP 187
Query: 198 ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLY 257
+ +Q +L SATLP+ L+EF GL +P + +LD D I+ L+++F R EEK + LL
Sbjct: 188 KVKQVVLVSATLPTQLSEFVSFGLNEPIVTKLDQDQNINEQLQMSFIYSRNEEKISVLLR 247
Query: 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKT 317
++ ++ D ++++FV+T+HHVEF L + G S YG MD D R I +SRFR+ KT
Sbjct: 248 VLNKY--KDLKSIVFVATRHHVEFFRTLLHKLGYSVSCVYGTMDMDNRVIEMSRFRSNKT 305
Query: 318 MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAY 377
L+VTDVA+RG+DIP +D V+N+DFP K+F+HRVGR ARAGR G A S VT++D ++
Sbjct: 306 RILLVTDVASRGLDIPFVDLVVNFDFPYSTKLFIHRVGRTARAGRQGLAVSIVTNKDFSF 365
Query: 378 LLDLHLFLSK----PIRAAPSEEEVLLDMDG------------------VMSKIDQAIAN 415
LL + L+K PI + + D V ++ + N
Sbjct: 366 LLQILCKLNKSLLLPINNSSNTSNSGNSEDASTIENSSGNVIRIKNDKLVSEELAGEVDN 425
Query: 416 GETIYGRFPQT--VIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRR 473
+ G +I+ V++++ E + SA S+Q N++ LY KT+P P+ I+
Sbjct: 426 NYCVIGSCNDLNHLIENVNNKISEDPELSAQFRSMQ----NSYNLYYKTRPNPTHNFIQL 481
Query: 474 GKDL-----PREGLHPMFKNVLEGGELMALA--------------------FSERLKAFR 508
+ LH N L+ +A + E L ++
Sbjct: 482 SNQFFQLYSSQFLLHLFHPNYLQTTNNANIATNKVDTDNHSDNFNNNVKEEYLEYLSNYK 541
Query: 509 PKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKSMEKEVEPEA 568
P + I++ H++ K+ N+ H RS+ + + V
Sbjct: 542 PDEKIVQNNISLNSINHMK----------------QLKLYNINH-TRSTNNTQNSVNDTN 584
Query: 569 DSLMAKEIKETHGSKRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLD 628
D++ + + ++ K KD + N E E+ VLD
Sbjct: 585 DTIGVDNV--INIKEKDEKLVKDND-------ENEMYE----------------ESLVLD 619
Query: 629 LVADDSGGLQKQKQVYH--WDKRGKKYIKL-----NNGERVSASGKVVKTESGAKVKATK 681
+V D+ ++K++ + W++R KK+ + NN + +S K G K
Sbjct: 620 MVPDNEDLIKKKRYMTKEVWNRRTKKFQHVTVDLYNNNKIISNRTNNTKDNQGNSSGKDK 679
Query: 682 TGIYKKWKERSHKKV 696
++KKW +++ +++
Sbjct: 680 -NLFKKWVKKTSRRI 693
>gi|401885301|gb|EJT49422.1| hypothetical protein A1Q1_01444 [Trichosporon asahii var. asahii
CBS 2479]
Length = 690
Score = 355 bits (911), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 239/698 (34%), Positives = 380/698 (54%), Gaps = 122/698 (17%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGA--DVVAMARTGSGKTAAFLVPML 82
+++L ++P++ RA++ +G+K PTP+QR ++PL +S DV+ MARTGSGKT A+L+P+L
Sbjct: 35 WQALGVAPSLVRALQLRGFKTPTPVQRASIPLTISNPPRDVLGMARTGSGKTLAYLIPLL 94
Query: 83 QRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGR--------YTDLRISLLVGGDSME 134
RL G+RALI+ P+R+LA+Q LK K+L R LR SL++GG+S++
Sbjct: 95 HRLGFRREGAGIRALIMCPSRELAVQILKAGKDLSRNLATGVSDAQPLRWSLVMGGESLD 154
Query: 135 SQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILG 194
+QFE + PDI LF MGF +QLH+IL
Sbjct: 155 AQFESIVSRPDI---------------------------------LFEMGFEQQLHEILH 181
Query: 195 QLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAA 254
+L NR +LLFSATLPS+LAEFAKAGL +P VRLD D +I+PDL L FF ++ +EK A
Sbjct: 182 RLPVNRHSLLFSATLPSSLAEFAKAGLNNPEFVRLDSDMRINPDLDLGFFHVKPDEKDAG 241
Query: 255 LLYMIRE---------HISSDQ-QTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDA 304
LL ++R+ I +D+ + +IF STKHHVE+L+VL + G S YG +DQ A
Sbjct: 242 LLLLLRDVLKIPSRAASIDADRAKAIIFASTKHHVEYLSVLLQAAGYRVSYIYGSLDQVA 301
Query: 305 RKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTG 364
R+ + RFRA +T L+VTDVAARGIDIP + +VIN+D P ++FVHRVGR ARAG+ G
Sbjct: 302 RQQQLKRFRAAETDLLVVTDVAARGIDIPSIPHVINYDLPTGVRVFVHRVGRTARAGQHG 361
Query: 365 TAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFP 424
A++ VT +D+ Y+ DL +FL E + L D + YG P
Sbjct: 362 HAWTLVTRDDLPYMRDLEIFL---------ERDFLKDKES---------------YGNLP 397
Query: 425 QTVIDLVSDRVREIID-SSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREG-- 481
+ ++ + + V++ +D + L SL+ ++ +++ +K++ + K++ G
Sbjct: 398 RDSLETMLEYVQQTLDIEESQLPSLRGVMRRGQTMFERSRAKANKDAYKYVKEISASGGP 457
Query: 482 --LHPMFKNVLEGGELMALAFSERL---KAFRPKQTILEAEGEAARSKHLQGPSSQWVDV 536
+HP+F + +L A + L +A++P +TI E AR K +
Sbjct: 458 SLVHPVFSSNEAPSDLQAAGRDKLLASIEAYQPHETIFEI---GARGKQAAA------QL 508
Query: 537 MKKKRAVHEKIINLVHQQRSSKSMEKEVEPEADSLMAKEIKETHGSKRKAKTFKDEEYFI 596
MK++R + + ++RS ++ + D+ M + + K +
Sbjct: 509 MKQRR-------DTIARRRSQRASAPD-----DNAMDLDDSDVDNEKPLPRAI------- 549
Query: 597 SSVPTNHHMEAGLSVRSDQGFGL-NRLEAAVLDLVAD--DSGGLQKQKQVYHWDKRGKKY 653
++ + ++ +G +G + +A LDL AD D+ QK Q+ WD++ K++
Sbjct: 550 -AILISIYLRSGWKRTEREGTTFAEQARSATLDLNADEGDAARAQKASQL-KWDRKRKRF 607
Query: 654 IKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKE 690
+K G + K++++ESGA + AT K+G + WK+
Sbjct: 608 VKDAPG---GDNKKMIRSESGALLPATFKSGKFADWKK 642
>gi|428671631|gb|EKX72549.1| DEAD box ATP-dependent RNA helicase family member protein [Babesia
equi]
Length = 773
Score = 353 bits (905), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 240/723 (33%), Positives = 372/723 (51%), Gaps = 107/723 (14%)
Query: 3 LVSSKAELKRREKQKKKSKSGGFESLNLSPNVFRAIKRK-GYKVPTPIQRKTMPLILSGA 61
L+ AE KRR+K+ +G F L L+ ++ ++RK YK P+ IQRKT+PL+L
Sbjct: 5 LMEGDAE-KRRKKKNPGGGTGAFGVLGLNKSLCLTLERKFRYKQPSAIQRKTIPLVLKRT 63
Query: 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKE-LGRYT 120
DVV +ARTGSGKT A+L P++Q L+ H G R L+L P+R+LALQ K+ +G+
Sbjct: 64 DVVCIARTGSGKTIAYLAPIIQLLDVHSTTVGSRCLVLLPSRELALQVASVVKKFVGKTD 123
Query: 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVE-DMSLKSVEYVVFDEADC 179
LR + L+GG ++E+QF LA NPDI+IATPGRL HL E DMSL +E+ V DEAD
Sbjct: 124 GLRHATLIGGQALETQFGSLAFNPDIVIATPGRLSQHLVEKSFDMSL--LEHFVIDEADK 181
Query: 180 LFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDL 239
LF MGF ++++ L ENRQ +L SATLPS ++EF GL +P + ++D D +I+ L
Sbjct: 182 LFEMGFLPDVYRVFSMLPENRQVVLVSATLPSEVSEFVSFGLSNPAVTKIDQDMQINEQL 241
Query: 240 KLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGD 299
+LAF R ++FV+TKHHVEF L + G + S YG
Sbjct: 242 ELAFVYSR---------------------IILFVATKHHVEFFRCLLTKNGHKVSAVYGS 280
Query: 300 MDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAAR 359
MD R +S+F++ KT LIVTD+AARG+D+PL+D V+N+DFP K+F+HRVGR AR
Sbjct: 281 MDMSMRTSQMSQFQSFKTTILIVTDLAARGLDLPLVDIVVNFDFPHSSKLFIHRVGRTAR 340
Query: 360 AGRTGTAFSFVTSEDMAYLLDLHLFLSKPIR---AAPSEEEVLLDMDGVMSKIDQAIANG 416
AG+ G A S +T D A+ ++ + + + A P E L D M
Sbjct: 341 AGKQGLAVSLLTLYDFAFCFEILETIGRKMAISGATPEGSEGGLKNDTCMVG-------- 392
Query: 417 ETIYGRFPQTVIDLVS--DRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRG 474
TV ++VS +++ E I + ++L SL + N++ LY KT+P PS +I +
Sbjct: 393 ---------TVGNVVSWVEKINEQISNDSELESLNTSMENSYNLYYKTRPNPSNIAIDKS 443
Query: 475 KDLPRE---------GLHPMFKNVL--------EGGELMALAFSERLKAFRPKQTILEAE 517
+ L +HP++ + E + A + L FRP
Sbjct: 444 QSLLESLGGIAVIAASVHPLYTGDVQTPQGSGDENQQDARNAILDYLHGFRPT------- 496
Query: 518 GEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKSMEKEVEPEADSLMAKEIK 577
A ++ L S + +DVM K++ +K + + K + +V A E+
Sbjct: 497 --ALKTTMLTTVSQESIDVMTKRKEFAQKFMVSRKNRDLGKLLNNDVNVPA------EVA 548
Query: 578 ETHGSKRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGL 637
+ + +K + + + S +N + L L++ D +
Sbjct: 549 DVNVELAPSK----DSFLVPSASSNEELH---------------LPNITLNITPDTEELM 589
Query: 638 QKQK--QVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVK--ATKTGIYKKWKERSH 693
QK + + W+ + K+++ + + + +V+K ESG KVK G K+W ++S
Sbjct: 590 QKTRFQRKQQWNPKRKRFMDVTVD---TMTNRVIKNESGLKVKKGIENKGQLKQWMKKSS 646
Query: 694 KKV 696
+++
Sbjct: 647 QRI 649
>gi|449018080|dbj|BAM81482.1| ATP-dependent RNA helicase [Cyanidioschyzon merolae strain 10D]
Length = 854
Score = 352 bits (904), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 209/497 (42%), Positives = 296/497 (59%), Gaps = 28/497 (5%)
Query: 16 QKKKSKSGGFESLNLSPN-VFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKT 74
Q K F +L L + RA+ GY+ PTPIQRK +PLILSG DVVAMARTGSGKT
Sbjct: 16 QPKPPAGLAFVALGLDARRIVRALVHCGYREPTPIQRKVIPLILSGRDVVAMARTGSGKT 75
Query: 75 AAFLVPMLQRLNQHVPQG-GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSM 133
AAFLVP++QR+ H Q GVR L+LSPTR+LALQT KF E +Y LR +LL+GG+S+
Sbjct: 76 AAFLVPLIQRIALHPTQCVGVRGLVLSPTRELALQTFKFLCEYAKYARLRAALLIGGESL 135
Query: 134 ESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKIL 193
E+QF LAQNP++++ATPGRL+ L +V SLK +E +V DEAD L+ A + +IL
Sbjct: 136 EAQFAALAQNPEVLVATPGRLLQVLDQVPHFSLKLLEIIVLDEADRLWEGNLASESRRIL 195
Query: 194 GQL--------------SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDL 239
L + Q +L SATLP LA F++ L P VRLD + +S +
Sbjct: 196 DMLRGTPQVENVSGLNVAAQTQKVLVSATLPKDLANFSQMVLSSPAFVRLDEEKLLSEAV 255
Query: 240 KLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLN-VLFREEGLEPSVCYG 298
+ + RQEEK AAL++++R ++S ++ L+F +TKHH + + +L R E + +G
Sbjct: 256 ETGYIFCRQEEKIAALIHVLRTLLASSKRILVFFATKHHAAYAHRLLSRYENWPVACIHG 315
Query: 299 DMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAA 358
MDQ RK + FR ++ + L VTDVAARG+D+P LD VIN+ FPP PK+FVHR GR
Sbjct: 316 GMDQICRKRTLEEFRKKEQVSLFVTDVAARGLDLPQLDVVINFHFPPSPKLFVHRCGRVG 375
Query: 359 RAGRTGTAFSFVTSEDMAYLLDLHLFLS--KPIRAAPSEEEVLLDMDGVMSKIDQAIANG 416
R GR G +S V+++++ Y+LD+ LF + K S EE +D+ D N
Sbjct: 376 RRGRKGWCWSLVSTDEVPYMLDVWLFANDGKSFAFRESSEECPVDVGNRGYVRDLRSQN- 434
Query: 417 ETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKD 476
GR + +++R++ A+L SL ++C A+ LY +T+ S S+ R +
Sbjct: 435 ---VGRVSSAICQSIAERIQRAEMEDAELQSLHQSCVRAYDLYRRTRIKASGSSVVRARH 491
Query: 477 LPRE-----GLHPMFKN 488
L E +HP+F +
Sbjct: 492 LRNEYWSHVSIHPIFSS 508
>gi|348532949|ref|XP_003453968.1| PREDICTED: ATP-dependent RNA helicase DDX54-like, partial
[Oreochromis niloticus]
Length = 336
Score = 345 bits (885), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 167/270 (61%), Positives = 215/270 (79%), Gaps = 1/270 (0%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
R + KKK KSGGF+S+ LS VF+ + +KGYK+PTPIQRKT+P+IL G DVVAMARTGSG
Sbjct: 66 RAQNKKKKKSGGFQSMGLSYPVFKGVMKKGYKIPTPIQRKTVPVILDGKDVVAMARTGSG 125
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTAAFL+PM ++L Q G RALIL+PTR+LALQT+KFTKELG++T L+ +L++GGD
Sbjct: 126 KTAAFLIPMFEKLKAPQAQTGARALILTPTRELALQTMKFTKELGKFTGLKTALILGGDR 185
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
ME QF L +NPDIII TPGRLMH + E+ ++ L SV YVVFDEAD LF MGFAEQL +I
Sbjct: 186 MEDQFAALHENPDIIIGTPGRLMHVVMEM-NLKLHSVAYVVFDEADRLFEMGFAEQLQEI 244
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
+ +L + RQTLLFSATLP L EFA+AGL +P L+RLDVD+K+S +KL+FF LR ++K
Sbjct: 245 IRRLPDTRQTLLFSATLPKLLVEFARAGLTEPVLIRLDVDSKLSDQIKLSFFHLRVDDKP 304
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFL 282
A LL+++R + +QT++F +TKHHVE+L
Sbjct: 305 ALLLHLLRNVVKPQEQTVVFAATKHHVEYL 334
>gi|308197153|gb|ADO17669.1| CNB00610 [Tremella mesenterica]
Length = 700
Score = 343 bits (879), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 240/734 (32%), Positives = 390/734 (53%), Gaps = 96/734 (13%)
Query: 11 KRREKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGA--DVVAMAR 68
+ R + + K ++ L ++ ++ ++ +G+K PTPIQ+ T+PL L+ DV+ MAR
Sbjct: 22 RSRSQAPIRLKDSQWQRLGVNQSLIHSLLLRGFKSPTPIQKSTLPLTLASPPRDVLGMAR 81
Query: 69 TGSGKTAAFLVPMLQRLNQH-VPQGGVRALILSPTRDLALQTLKFTKELGR--------- 118
TGSGKT A+L+P+LQRL+ VP ++ALIL P+R+LA+Q LK K+L R
Sbjct: 82 TGSGKTLAYLIPLLQRLSSSAVPVPSIKALILCPSRELAVQILKAGKDLARGLRKEPLKN 141
Query: 119 YTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178
LR ++++GG+S++ FE L+ PD+++ATPGR++H + E+ + L+++E V+ +
Sbjct: 142 EQPLRWAIIMGGESLDDHFEVLSGKPDVVVATPGRMLHLIVEMS-LDLRTLEMVITTKPI 200
Query: 179 C-LFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISP 237
LF MGF QL +IL +L RQ+LLFSATLP+ +AEFAKAGL +P ++RLD + IS
Sbjct: 201 GELFEMGFESQLREILHRLPSTRQSLLFSATLPTKVAEFAKAGLVNPSMIRLDAEQTISA 260
Query: 238 DLKLAFFTLRQEEKHAALLYMIREHIS--------SDQQTLIFVSTKHHVEFLNVLFREE 289
DL+L F ++ +K AA+L ++ + Q +IFV+TKHHVE+L L R
Sbjct: 261 DLRLHFAYVKPADKDAAVLALLGVLLGKSGPSSPEGSSQIIIFVATKHHVEYLVCLLRAA 320
Query: 290 GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKI 349
G E + YG +DQ ARK + FRA + L+VTDVAARG+DIP++ NVIN+DFP +
Sbjct: 321 GYESAYIYGSLDQVARKTQIDSFRAGRQQILVVTDVAARGLDIPMIGNVINYDFPTGVRG 380
Query: 350 FVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLS-KPIRAAPSEEEVLLDMDGVMSK 408
FVHRVGR ARAGR G A+S VT+ D+A+L DL LS K A+P
Sbjct: 381 FVHRVGRTARAGRRGMAWSLVTTGDIAHLFDLDEALSVKIFDASP--------------- 425
Query: 409 IDQAIANGETIYGRFPQTVIDLVSDRVR-EIIDSSADLNSLQRTCTNAFRLYSKTKPLPS 467
+ GR PQ V++ +R+ + +S L +L+ ++ ++K S
Sbjct: 426 ---------PLIGRLPQQVLETHRERIAVGLAESDRSLAALRMVKDRGQAMFERSKSRAS 476
Query: 468 KESIRRGKDLPREG--------------LHPMFKNVLEGGELMALAFSERLKAFRPKQTI 513
++ R K R HP N L A ++ +RP+ ++
Sbjct: 477 ADAHRMSKLWIRSSHDGSDLAVLPVFVTSHPAVANERCDDLLRA------IETYRPRTSV 530
Query: 514 LEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKSMEKEVEPEADSLMA 573
++ + S V V K +RA +V + R + + + S
Sbjct: 531 GKSSSRVS--------SKAVVAVSKLERA------TVVSEYRQGSADFVPLGALSRSSTN 576
Query: 574 KEIKETHGSKRKAKTFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADD 633
+ + T S R ++++ E+F+ + E S+ F ++L +A ++ AD+
Sbjct: 577 ERVFLTVPSSR--SSYRNSEFFLPHAREDAQHEKTYSINGADCFS-SQLRSATFNMSADE 633
Query: 634 SGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERS 692
+ WD+R KK+++ ++ + S + ++V++ESGA + A+ +G ++ W R
Sbjct: 634 AQ--------LRWDRRKKKFVQESSID--STNQRMVRSESGALLPASFSSGRFRDWSTRR 683
Query: 693 HKKVYLKGASNEGN 706
+G + G+
Sbjct: 684 RVTSAGRGRQHSGS 697
>gi|118575170|sp|Q0UMB6.1|DBP10_PHANO RecName: Full=ATP-dependent RNA helicase DBP10
Length = 878
Score = 340 bits (873), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 172/341 (50%), Positives = 227/341 (66%), Gaps = 37/341 (10%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+++ L+ + +AI +KG+K+PTPIQRK +PLIL G DVV MARTGSGKTAAF++PM++R
Sbjct: 80 FQAMGLNVALLKAIAQKGFKIPTPIQRKAVPLILQGDDVVGMARTGSGKTAAFVIPMIER 139
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L H + G R +I+SP+R+LALQTLK KE GR TDLR LLVGGDS+E QF + NP
Sbjct: 140 LKTHSAKVGARGVIMSPSRELALQTLKVVKEFGRGTDLRTILLVGGDSLEEQFNSMTTNP 199
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
DIIIATPGR +H E+ + L SV+Y+VFDEAD LF MGFA QL +IL L +RQTLL
Sbjct: 200 DIIIATPGRFLHLKVEM-GLDLSSVQYIVFDEADRLFEMGFAAQLAEILYALPTSRQTLL 258
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSATLP +L EFA+AGL++P L+RLD ++KISPDLK A+FT++ ++ AL++++ I
Sbjct: 259 FSATLPKSLVEFARAGLQEPKLIRLDAESKISPDLKSAYFTIKSGDRDGALIHLLENVIK 318
Query: 265 S------------------------------------DQQTLIFVSTKHHVEFLNVLFRE 288
++ T+IF +TKH VE+L+ L +
Sbjct: 319 MPVGQTEVWKQAKEEADNLSKGKKRKRGSGNPKDAPVEESTIIFAATKHRVEYLSTLLKA 378
Query: 289 EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARG 329
G S YG++DQ AR+ V FRA T L+VTDVAARG
Sbjct: 379 AGYPVSYVYGNLDQTARQEQVKDFRAGLTRILVVTDVAARG 419
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 84/373 (22%), Positives = 146/373 (39%), Gaps = 66/373 (17%)
Query: 444 DLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREG----LHPMFKNVLEGGELMALA 499
DL +L R Y +T+ S +S+ R KDL + H +F + +
Sbjct: 504 DLVNLLNVAEKGERQYQRTRNQASNQSVHRAKDLASDSKFAETHMLFNDEMHDALRAKED 563
Query: 500 FSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKS 559
ER++ FRP +T+ E +G +S+ ++M+K+R E+ +++
Sbjct: 564 MLERIQGFRPAETVFEI--------GKRGTNSEAAEIMRKRRVAVERQKTKQAFNKANDE 615
Query: 560 MEKEVEPEADSLMAKE------------------------IKETHGSKRKAKTFKDEEYF 595
P AD+L E + + K ++ +E+F
Sbjct: 616 SSGLTRPTADALPDDELDSEDDQQAAVGDYESESDELEVTVSQPESKKSGKDVWRSDEFF 675
Query: 596 ISSVP-TNHHMEAGLSVRSDQGFGLNRLEAA---VLDLVADDSGGL-QKQKQVYHWDKRG 650
+S +P N E V+ N + AA + LV D+ G K WDK+
Sbjct: 676 MSYLPKENFAEEKAYGVQGGDAGNSNFVSAARSAEMSLVNDEIQGFADASKPRMRWDKKS 735
Query: 651 KKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNAEE 709
KKY+ N E S K+++ ESG K+ A+ ++G + W++ + K+ G N
Sbjct: 736 KKYVSRANDEDGSKGAKMIRGESGQKIAASFRSGRFDDWRKANKVKMQRVGEMEAPNRST 795
Query: 710 TTSVPGGRHLGGNNRKFRGGKNQQRSVPNAHVC---------------------SEIKDL 748
+ G R+ ++ + K R + HV +E+KD+
Sbjct: 796 QFNSGGPRY---KHKAEKAPKQADRYRDDYHVQKQRVQEAKEKRIGHFKDGGAKNELKDV 852
Query: 749 DQVRKERQKKADR 761
D VRKER+ + R
Sbjct: 853 DTVRKERRVQEKR 865
>gi|428173676|gb|EKX42577.1| hypothetical protein GUITHDRAFT_46749, partial [Guillardia theta
CCMP2712]
Length = 385
Score = 337 bits (865), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 175/387 (45%), Positives = 246/387 (63%), Gaps = 13/387 (3%)
Query: 18 KKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77
KK + G F +L + ++ +A+ GYK PTP+QRK++P +LSGA+VV MARTGSGKTAAF
Sbjct: 1 KKHRPGSFPALGIEDSIAKALMHAGYKFPTPVQRKSIPELLSGANVVMMARTGSGKTAAF 60
Query: 78 LVPMLQRL----NQHVPQG---GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGG 130
LVP++QR+ + + QG G++ L+L PTR+LALQT F K +YT L L+VGG
Sbjct: 61 LVPLIQRIRAISDSNWAQGKVIGIQGLVLVPTRELALQTFNFFKSYAKYTQLTACLIVGG 120
Query: 131 DSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLH 190
+++E QF LA NP+++IATPGRL+ L+EV SLK V V DEAD LF +
Sbjct: 121 EALEPQFAALATNPNVVIATPGRLLQLLNEVRTFSLKGVRVCVLDEADRLFETSLIQSER 180
Query: 191 KILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE 250
+ + RQ +L SAT+P LA+FA A ++D L+RLD DT +S LK+ +F + E
Sbjct: 181 AV--KKKPFRQMILVSATMPKELADFASADVQDHILIRLDTDTLMSESLKVGYFYVLDYE 238
Query: 251 KHAALLYMIREHISSDQQT----LIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARK 306
K L +++ + + T LIF +T+H VE + + G + +G D + RK
Sbjct: 239 KLPGLAFLLSNILDTTGNTTLPCLIFCATRHSVELITQVLGHAGFQVGGLHGHADNEQRK 298
Query: 307 IHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTA 366
I V F ++ L+VTD+AARGIDIPLLD VIN+DFP PK+F+HR GRA RAG GT
Sbjct: 299 ILVEDFAKKRLQVLVVTDLAARGIDIPLLDYVINFDFPSTPKLFIHRCGRAGRAGMIGTV 358
Query: 367 FSFVTSEDMAYLLDLHLFLSKPIRAAP 393
+S +T ED+ +L+D +L L + +R P
Sbjct: 359 YSLITPEDLPHLIDANLVLGRKMRTTP 385
>gi|123478847|ref|XP_001322584.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
gi|121905433|gb|EAY10361.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
Length = 703
Score = 336 bits (861), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 230/750 (30%), Positives = 387/750 (51%), Gaps = 110/750 (14%)
Query: 43 YKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102
Y+ PTPIQ++ +P++L+ DVVAM++TGSGKTA+FL+P++Q+LN+H G R LI++P+
Sbjct: 20 YRKPTPIQKEVIPVVLADHDVVAMSKTGSGKTASFLLPIVQKLNEHSTITGCRCLIITPS 79
Query: 103 RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVE 162
R+LALQT + ++ T+L+ + ++GG+++ QFE L +NPD+IIATPGRL+ ++E +
Sbjct: 80 RELALQTGHYFQKYASQTNLKCAQIIGGEALPPQFESLTKNPDVIIATPGRLLQIIAETQ 139
Query: 163 DMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLR 222
SL V+ +V DEAD LF G Q+ IL L E Q+LLFSAT+PS LAEF + L
Sbjct: 140 -YSLSRVQIIVIDEADLLFEQGLEPQMTAILKLLPEKHQSLLFSATVPSVLAEFTRINLS 198
Query: 223 DPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFL 282
++R+D +K+ L + F + K A LL + E+ +++L+FV+T++H EFL
Sbjct: 199 RATVIRID-QSKLPKTLTVNFLFVNPYYKPALLLQTVTEY----RRSLVFVATRYHAEFL 253
Query: 283 NVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWD 342
+ R+ L+ + YG+MDQD R ++ F L+VTDVAARG+DI L+ V+N+D
Sbjct: 254 SAFLRDSNLKSAAIYGNMDQDERSSSLAAFSRGSLRCLVVTDVAARGLDIEGLEAVVNYD 313
Query: 343 FPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDM 402
FP +PK+F+HR GR+ RAG G SFVT +++ Y + R A EEE
Sbjct: 314 FPERPKVFLHRAGRSGRAGLKGEVVSFVTHDELPYYVG--------AREALQEEEPWTLR 365
Query: 403 DGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKT 462
+ S+I+ + TIY + + + DL L+++ N + Y K+
Sbjct: 366 RVMQSEINDQL----TIY---------------EDAMKRNYDLTVLRQSMDNGEKKYVKS 406
Query: 463 KPLPSKESIRRGKDLPREGLHPMFKNVLEGGELMALAFSERLKAFRPKQTILEAEGEAAR 522
+ + + K++ ++EGG A + E+++A+RP++TI E
Sbjct: 407 RKNAKPQWLTMAKEI-----------IIEGG---ADSIEEKIRAWRPRETIFE------- 445
Query: 523 SKHLQGP-SSQWVDVMKKKRAVHEKIINLVHQQRSS-------KSMEKEVEPEADSLMAK 574
Q P +S+ +VM+ R+ I + + +KE++ +A+ + +
Sbjct: 446 ----QAPQNSKQAEVMQAFRSTTNNFIKSRFNTKETDEPPLDDDESDKEIQNDAEKVTEE 501
Query: 575 EIKE--------------THGSKRKAKTFK--DEEYFISSVPTNHHMEAGLSVRSDQGFG 618
+ E H SK+ K +K ++F+ P + S+R
Sbjct: 502 RVIEDKTNDSKPEVKKRKEHVSKKPKKEYKPVQSKFFLGYRPPDDDAN---SIRDGTA-- 556
Query: 619 LNRLEAAVLDLVADDSGGLQK---QKQVYHWD------KRGKKYIKLNNGERVSASGKVV 669
+ L AV+D+ DD G K Q+Q+Y + +R ++ ++ N + A+ ++
Sbjct: 557 -SSLIDAVMDMAPDDREGFMKMKQQRQMYKKNIQSSTQQRLQRAMESKNATLIKAATSML 615
Query: 670 KTESGAKVKATKTGIYKKWKERSHKKVYLKGASNEGNAEETTSVPGGRHLGGNNRKFRGG 729
+G VK K Y++W V + AS + EE + G + + RK +
Sbjct: 616 ---TGKSVKGEK---YQEW-------VSMSKASIQAPGEEERVIKGSLRVPRSQRKVKSE 662
Query: 730 KNQQRSVPNAHVCSEIKDLDQVRKERQKKA 759
R++ + + L+ K ++ KA
Sbjct: 663 LKDARTIERERLIKQKHKLNDAGKHKEAKA 692
>gi|221482850|gb|EEE21181.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii GT1]
Length = 983
Score = 333 bits (853), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 195/516 (37%), Positives = 290/516 (56%), Gaps = 36/516 (6%)
Query: 17 KKKSKSGGFESLNLS-PNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTA 75
KK K FE+L LS P AIK G+ PTPIQR+ +PL+L G D + M+RTGSGKTA
Sbjct: 18 KKSKKRNAFETLGLSTPTSLAAIKGLGFSQPTPIQRRAIPLLLKGKDCILMSRTGSGKTA 77
Query: 76 AFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMES 135
FL+P+L L +H GVRA++++PTR+L Q + +L + LR+ L+GG++
Sbjct: 78 CFLLPLLDLLGEHSSVVGVRAVLIAPTRELVAQIHRVCSKLLHSSSLRVCCLLGGENYSK 137
Query: 136 QFEELAQNPDIIIATPGR---LMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
QF L++NPD+++ T GR L+H + +SL + ++V DEAD +F +G+ EQL +
Sbjct: 138 QFLALSRNPDVLLTTVGRGSQLIHD----KVLSLSAARFLVLDEADRIFELGWKEQLSML 193
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
L ++Q +L SATLP L FA+ GLRDP VRL+ + +S DL + F +R +K
Sbjct: 194 FAALPASKQVVLVSATLPGDLVNFARLGLRDPEFVRLEKECTLSDDLHMQFLFVRAAQKV 253
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
LL+++++ I +Q L+F ST+H FL +V YG MDQ R ++ F
Sbjct: 254 PTLLFLLKQSIQKKEQVLVFASTRHQATFLQCFCERLAFPSAVIYGAMDQTERVQTLAAF 313
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
+ K L+VTDVAARG+DIP L +VIN+DFP K+FVHRVGR ARAGR+GTAFS VT
Sbjct: 314 KKGKISVLLVTDVAARGLDIPHLPSVINFDFPSSAKLFVHRVGRTARAGRSGTAFSLVTG 373
Query: 373 EDMAYLLDLHLFLSKPIRAAP------------SEEEVLLDM----DGVMSKIDQAIANG 416
+D+ Y ++L FL R P EE +D+ D + + ++G
Sbjct: 374 DDLPYAVELMSFLGG--RLVPPFSFSSEADDTRQEETEDVDLPKPEDASKDTVSPSPSSG 431
Query: 417 ETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKD 476
+ P ++D + ++ + ++ + +T ++A +Y KT+P S++S+ R K
Sbjct: 432 NYVLA-GPPALVDPFVEFCESLLHTDDEVAAAHKTASSANAMYYKTRPSASRQSVERAKG 490
Query: 477 -LPREG--------LHPMFKNVLEGGELMALAFSER 503
L R G HP F + E L+ ER
Sbjct: 491 LLARCGGAMVLSAFAHPCFSSASGPSEATVLSRVER 526
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 8/83 (9%)
Query: 619 LNRLEAAVLDLVADDSGGLQKQKQVYH--WDKRGKKYIKLNNGERVSASGKVVKTESGAK 676
L RL+ A +DL+AD++ +++Q+ WD + +KYI + SA+G+ VK + G
Sbjct: 794 LLRLDEAAMDLIADENDDMKRQRATEQQRWDPKKRKYIMMKVD---SATGRAVKRKRGTD 850
Query: 677 VKATKTGI---YKKWKERSHKKV 696
+ KT Y +W + +++
Sbjct: 851 KQEEKTSSAHRYAQWCRETKRRI 873
>gi|237840673|ref|XP_002369634.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
gi|211967298|gb|EEB02494.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
gi|221503359|gb|EEE29057.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii VEG]
Length = 983
Score = 333 bits (853), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 195/516 (37%), Positives = 290/516 (56%), Gaps = 36/516 (6%)
Query: 17 KKKSKSGGFESLNLS-PNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTA 75
KK K FE+L LS P AIK G+ PTPIQR+ +PL+L G D + M+RTGSGKTA
Sbjct: 18 KKSKKRNAFETLGLSTPTSLAAIKGLGFSQPTPIQRRAIPLLLKGKDCILMSRTGSGKTA 77
Query: 76 AFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMES 135
FL+P+L L +H GVRA++++PTR+L Q + +L + LR+ L+GG++
Sbjct: 78 CFLLPLLDLLGEHSSVVGVRAVLIAPTRELVAQIHRVCSKLLHSSSLRVCCLLGGENYSK 137
Query: 136 QFEELAQNPDIIIATPGR---LMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
QF L++NPD+++ T GR L+H + +SL + ++V DEAD +F +G+ EQL +
Sbjct: 138 QFLALSRNPDVLLTTVGRGSQLIHD----KVLSLSAARFLVLDEADRIFELGWKEQLSML 193
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
L ++Q +L SATLP L FA+ GLRDP VRL+ + +S DL + F +R +K
Sbjct: 194 FAALPASKQVVLVSATLPGDLVNFARLGLRDPEFVRLEKECTLSDDLHMQFLFVRAAQKV 253
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
LL+++++ I +Q L+F ST+H FL +V YG MDQ R ++ F
Sbjct: 254 PTLLFLLKQSIQKKEQVLVFASTRHQATFLQCFCERLAFPSAVIYGAMDQTERVQTLAAF 313
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
+ K L+VTDVAARG+DIP L +VIN+DFP K+FVHRVGR ARAGR+GTAFS VT
Sbjct: 314 KKGKISVLLVTDVAARGLDIPHLPSVINFDFPSSAKLFVHRVGRTARAGRSGTAFSLVTG 373
Query: 373 EDMAYLLDLHLFLSKPIRAAP------------SEEEVLLDM----DGVMSKIDQAIANG 416
+D+ Y ++L FL R P EE +D+ D + + ++G
Sbjct: 374 DDLPYAVELMSFLGG--RLVPPFSFSSEADDTRQEEAEDVDLPKPEDASKDTVSPSPSSG 431
Query: 417 ETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKD 476
+ P ++D + ++ + ++ + +T ++A +Y KT+P S++S+ R K
Sbjct: 432 NYVLA-GPPALVDPFVEFCESLLHTDDEVAAAHKTASSANAMYYKTRPSASRQSVERAKG 490
Query: 477 -LPREG--------LHPMFKNVLEGGELMALAFSER 503
L R G HP F + E L+ ER
Sbjct: 491 LLARCGGAMVLSAFAHPCFSSASGPSEAAVLSRVER 526
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 8/87 (9%)
Query: 619 LNRLEAAVLDLVADDSGGLQKQKQVYH--WDKRGKKYIKLNNGERVSASGKVVKTESGAK 676
L RL+ A +DL+AD++ +++Q+ WD + +KYI + SA+G+ VK + G
Sbjct: 794 LLRLDEAAMDLIADENDDMKRQRATEQQRWDPKKRKYIMMKVD---SATGRAVKRKRGTD 850
Query: 677 VKATKTGI---YKKWKERSHKKVYLKG 700
+ KT Y +W + +++ G
Sbjct: 851 KQEEKTSSAHRYAQWCRETKRRIQRVG 877
>gi|95007351|emb|CAJ20571.1| dead-box helicase, putative [Toxoplasma gondii RH]
Length = 822
Score = 332 bits (850), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 195/516 (37%), Positives = 290/516 (56%), Gaps = 36/516 (6%)
Query: 17 KKKSKSGGFESLNLS-PNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTA 75
KK K FE+L LS P AIK G+ PTPIQR+ +PL+L G D + M+RTGSGKTA
Sbjct: 18 KKSKKRNAFETLGLSTPTSLAAIKGLGFSQPTPIQRRAIPLLLKGKDCILMSRTGSGKTA 77
Query: 76 AFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMES 135
FL+P+L L +H GVRA++++PTR+L Q + +L + LR+ L+GG++
Sbjct: 78 CFLLPLLDLLGEHSSVVGVRAVLIAPTRELVAQIHRVCSKLLHSSSLRVCCLLGGENYSK 137
Query: 136 QFEELAQNPDIIIATPGR---LMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
QF L++NPD+++ T GR L+H + +SL + ++V DEAD +F +G+ EQL +
Sbjct: 138 QFLALSRNPDVLLTTVGRGSQLIHD----KVLSLSAARFLVLDEADRIFELGWKEQLSML 193
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKH 252
L ++Q +L SATLP L FA+ GLRDP VRL+ + +S DL + F +R +K
Sbjct: 194 FAALPASKQVVLVSATLPGDLVNFARLGLRDPEFVRLEKECTLSDDLHMQFLFVRAAQKV 253
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
LL+++++ I +Q L+F ST+H FL +V YG MDQ R ++ F
Sbjct: 254 PTLLFLLKQSIQKKEQVLVFASTRHQATFLQCFCERLAFPSAVIYGAMDQTERVQTLAAF 313
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
+ K L+VTDVAARG+DIP L +VIN+DFP K+FVHRVGR ARAGR+GTAFS VT
Sbjct: 314 KKGKISVLLVTDVAARGLDIPHLPSVINFDFPSSAKLFVHRVGRTARAGRSGTAFSLVTG 373
Query: 373 EDMAYLLDLHLFLSKPIRAAP------------SEEEVLLDM----DGVMSKIDQAIANG 416
+D+ Y ++L FL R P EE +D+ D + + ++G
Sbjct: 374 DDLPYAVELMSFLGG--RLVPPFSFSSEADDTRQEETEDVDLPKPEDASKDTVSPSPSSG 431
Query: 417 ETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKD 476
+ P ++D + ++ + ++ + +T ++A +Y KT+P S++S+ R K
Sbjct: 432 NYVLAG-PPALVDPFVEFCESLLHTDDEVAAAHKTASSANAMYYKTRPSASRQSVERAKG 490
Query: 477 -LPREG--------LHPMFKNVLEGGELMALAFSER 503
L R G HP F + E L+ ER
Sbjct: 491 LLARCGGAMVLSAFAHPCFSSASGPSEATVLSRVER 526
>gi|343474607|emb|CCD13783.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 757
Score = 330 bits (845), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 178/445 (40%), Positives = 268/445 (60%), Gaps = 28/445 (6%)
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L H GVR L+LSPTR+L++Q L+F +LG++ DLR LVGG+S+E QFE LA NP
Sbjct: 2 LKTHSKVVGVRGLVLSPTRELSMQILRFGIQLGKFLDLRFVALVGGNSLEQQFEMLASNP 61
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
DI++ATPGR++H + E + L V+ +V DEAD LF +G Q+ I+ ++ E+ Q L
Sbjct: 62 DIVVATPGRILHIMEEAS-LQLSMVKCLVLDEADRLFELGLQPQIVAIMQKVPESCQRAL 120
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI- 263
FSAT+P+ LAEF AGL +P ++RLD + K+S LK + F +R +EK AAL+ +++ I
Sbjct: 121 FSATMPTILAEFTNAGLHNPVVIRLDTEMKLSDKLKQSTFFVRNDEKIAALIVLLKRIIG 180
Query: 264 ---------SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRA 314
S+++Q LIFV +K HV+ L + + S +G MDQ+ R+ V F
Sbjct: 181 IDASDRRSESAERQALIFVESKFHVDCLESIMEAYHISCSAVHGQMDQEGRRNAVRAFSK 240
Query: 315 RKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
R T +IVTDVAARG+D+PLLDNV+N+ FP PK+FVHRVGR ARAGR+G+A+S +T ED
Sbjct: 241 RDTSVMIVTDVAARGLDLPLLDNVVNFSFPATPKLFVHRVGRVARAGRSGSAYSIITFED 300
Query: 375 MAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDR 434
+ +DL FL +P++ ++L D + YGR P+ + L D
Sbjct: 301 FPHYVDLMSFLDRPLQCRKEPGDLLFTAD-------------DGCYGRMPEDALQLELDF 347
Query: 435 VREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESI---RRGK-DLPREGLHPMFKNVL 490
+R + +L ++ + NA + + +T+ + +SI R+G+ LHP+F L
Sbjct: 348 LRRLASEDVELRAMMKVVDNAHKKFMRTRKRATHDSIQTARQGQYQFDSTPLHPIFVERL 407
Query: 491 EGGELMALAFSERLKAFRPKQTILE 515
+ ++ A LK F+ K+++LE
Sbjct: 408 DQKDVEADEARVALKRFKAKESLLE 432
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 13/113 (11%)
Query: 589 FKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDK 648
++D E+F+ V + + SV+ A D+ AD + Q+Q+QVY W K
Sbjct: 570 YRDREFFMDDVKRSTIDDVHYSVKD-----------ATFDIGADTAKDAQQQRQVYAWSK 618
Query: 649 RGKKYIKLNNGERVSASGKVVKTESGAKVK-ATKTGIYKKWKERSHKKVYLKG 700
+ +Y+++N + A + VK E+G V +K Y KW ++S+ ++ G
Sbjct: 619 KKNRYVRMNVND-AKALLRGVKNEAGKAVNFKSKLKAYSKWTKKSNIRIQDAG 670
>gi|403223265|dbj|BAM41396.1| ATP-dependent RNA helicase [Theileria orientalis strain Shintoku]
Length = 958
Score = 329 bits (844), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 170/364 (46%), Positives = 236/364 (64%), Gaps = 8/364 (2%)
Query: 23 GGFESLNLSPNVFRAIKRK-GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPM 81
G F L L+ + ++RK Y P+ IQRKT+P +L+ +DVV +ARTGSGKT A+L P+
Sbjct: 20 GAFGVLGLNKAICLTLQRKFKYNQPSSIQRKTIPHVLNKSDVVCIARTGSGKTIAYLAPI 79
Query: 82 LQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD----LRISLLVGGDSMESQF 137
+Q L H G R LIL PTR+LALQ K+ +++ LR + L+GG S+E+QF
Sbjct: 80 VQLLEVHSKIVGTRCLILLPTRELALQVESVLKKFINFSNQADRLRHATLIGGKSLETQF 139
Query: 138 EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS 197
L+ NPDI+IATPGRL HL E + SL + ++V DEAD LF MGF L+K+ QL
Sbjct: 140 GSLSFNPDIVIATPGRLAQHLVE-KSFSLSLINHLVIDEADKLFEMGFLPDLYKVFSQLP 198
Query: 198 ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLY 257
+ RQ +L SATLP+ ++EF GL DP + +++ D +I+ L+L F R EEK A L+
Sbjct: 199 KMRQVILVSATLPTQVSEFIAFGLNDPKITKIEQDLQINEQLELTFVYSRSEEKIATLIR 258
Query: 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKT 317
++ H + ++FV+T+HHVEF L S YG M+ +AR I +SRFR KT
Sbjct: 259 VLNTH--KGLKCILFVATRHHVEFFRSLLGGMNYSISCIYGSMEMNARMIEMSRFRGGKT 316
Query: 318 MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAY 377
L+VTD+A+RG+DIP +D VIN+DFP K+FVHRVGR ARAGR G + S + ++DM+Y
Sbjct: 317 KILVVTDLASRGLDIPFVDLVINYDFPYSTKLFVHRVGRTARAGRQGKSVSILINKDMSY 376
Query: 378 LLDL 381
LL +
Sbjct: 377 LLQI 380
>gi|253744188|gb|EET00428.1| ATP-dependent RNA helicase [Giardia intestinalis ATCC 50581]
Length = 900
Score = 324 bits (831), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 238/802 (29%), Positives = 386/802 (48%), Gaps = 107/802 (13%)
Query: 25 FESLN-LSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQ 83
FE L LSP V +AI GY TPIQ+ +P+I+ G D +++TGSGKTAA+ +P++
Sbjct: 35 FEKLGKLSPPVLKAIHSLGYPTLTPIQKAAIPVIIDGGDACIVSKTGSGKTAAYSIPLVN 94
Query: 84 RLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD--LRISLLVGGDSMESQFEELA 141
L H G+R L+++PTR+L +Q ++L R+TD LR+ LLVGG+++E QF L
Sbjct: 95 LLACHRATTGIRGLVIAPTRELCVQIGGVIRKLSRFTDPELRVCLLVGGEALERQFTALT 154
Query: 142 QNPDIIIATPGRLMHHLSEVEDM--SLKSVEYVVFDEADCLFGMGFAEQLHKIL------ 193
NPDII+ TPGR++H ++ LKSVEYV FDE+D +F M F +Q+++IL
Sbjct: 155 ANPDIIVCTPGRILHIHDQISTFKSQLKSVEYVCFDESDRMFEMNFQQQVNEILDLLPAE 214
Query: 194 ---GQLSENR--------QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLA 242
G ++E + Q ++ SAT+P LA F+KA L++P ++ + D + +L
Sbjct: 215 RTGGHITETKSARDFLGYQIIMVSATMPQNLAVFSKARLQNPAIIAAEDDMVLPNELTNQ 274
Query: 243 FFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQ 302
F + AALLY+ RE + + L+FV+TKHH E+L + + L + YG +DQ
Sbjct: 275 FIYCPTNYRDAALLYICRELVPKTWKLLVFVATKHHCEYLTSILQANNLRATCIYGSLDQ 334
Query: 303 DARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGR 362
R I +S F + LI TDVAARGIDIP LD VIN++FP K +VHRVGR+ARAG
Sbjct: 335 RQRTIALSDFDKGRYNILISTDVAARGIDIPSLDCVINYNFPSSGKNYVHRVGRSARAGS 394
Query: 363 TGTAFSFVTSEDMAYLLDLHLFLSKPIRAA-PSEEEVLLDMDGVMS-KIDQAI------- 413
G S + +++ Y LD+ L + + PS + V +D + +D
Sbjct: 395 YGLCVSIIEGDELPYCLDVMLHIGVKFHSLRPSSDVVTTFLDNCKTLGVDYTTFACLVGK 454
Query: 414 ----ANGETIYGRFPQTVIDLV-SDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSK 468
++ + + P ++D++ +D +R + + D+ + Q+T NA + + + S
Sbjct: 455 HATQSSFQGLTATIPGPLLDVIYADILRTLGEYGQDIRAQQKTANNAMKQVNSMRKSASP 514
Query: 469 ESIRRGKDLPREGL---HPMFKNV---------LEGGELMALAFSERLKAFR-PKQT--- 512
S R K++ + HP+ + E E S L +F+ P Q
Sbjct: 515 MSTERAKEIISGNMIYEHPLVHKIGIEKAEPAEKEAQEAALEHLSRVLYSFKVPTQQLEM 574
Query: 513 -ILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKSMEKE-------- 563
+ E+ G+A+ L +++KK + + N + + ++
Sbjct: 575 RVTESNGDASSVAML-----NMRRIVEKKARERQLVANELQKLSRDDALSGSGFHDTNST 629
Query: 564 --VEPEADSLMAKEIKETHG-------SKRKAK------TFKDEEYFISSV------PTN 602
EP M K+ E + KR+A + +D+ +IS V
Sbjct: 630 GLKEPPVKYYMTKDDLERYTILGKDAIEKRRASIAQTGTSSRDDNLYISDVQPAKPESKG 689
Query: 603 HHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQK--QKQVYH--WDKRGKKY----I 654
++A +V+ + +E + D + DD GL +++ + W+ K+Y I
Sbjct: 690 SFIDAQTAVKGIMVGNKDSIENVIADFIPDDKEGLASILRRKTFERRWNPLRKRYENVEI 749
Query: 655 KLNNGERVSASGKVVK--------TESGAK----VKATKTGIYKKWKERSHKKVYLKGAS 702
K + +S +G + K ES K TK +YKKWK+++ V G
Sbjct: 750 KAGETKTISDAGLIGKKKITQKRFNESTGKWVEVTPDTKQSLYKKWKQKTSLSVMPGGQQ 809
Query: 703 NEGNAEETTSVPGGRHLGGNNR 724
+ E + G+ LG R
Sbjct: 810 DTVTDMEARELLTGQGLGRRRR 831
>gi|159110427|ref|XP_001705473.1| ATP-dependent RNA helicase [Giardia lamblia ATCC 50803]
gi|157433558|gb|EDO77799.1| ATP-dependent RNA helicase [Giardia lamblia ATCC 50803]
Length = 900
Score = 319 bits (818), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 231/800 (28%), Positives = 381/800 (47%), Gaps = 103/800 (12%)
Query: 25 FESLN-LSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQ 83
FE L LSP V +AI GY T IQ+ +P+I+ G D +++TGSGKTAA+ +P++
Sbjct: 35 FEKLGKLSPPVLKAIHSLGYSTLTSIQKAAIPVIIDGGDACVVSKTGSGKTAAYSIPLVN 94
Query: 84 RLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD--LRISLLVGGDSMESQFEELA 141
L H G+R L+++PTR+L +Q ++L R+TD LR+ LLVGG+++E QF L
Sbjct: 95 LLGCHRATTGIRGLVIAPTRELCVQIGGVIRKLSRFTDPELRVCLLVGGEALEKQFTALT 154
Query: 142 QNPDIIIATPGRLMHHLSEVEDM--SLKSVEYVVFDEADCLFGMGFAEQLHKIL------ 193
NPDII+ TPGR++H +V LKS+EYV FDE+D +F M F +Q+++IL
Sbjct: 155 ANPDIIVCTPGRILHIHDQVSTFKSQLKSIEYVCFDESDRMFEMNFQQQVNEILDLLPAE 214
Query: 194 ---GQLSENR--------QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLA 242
G ++E R Q ++ SAT+P+ LA F+KA L++P ++ + D + +L
Sbjct: 215 RTGGHITETRSARDFLGYQIIMVSATMPNNLAVFSKARLQNPTIIAAENDMVLPNELTNQ 274
Query: 243 FFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQ 302
F + AALLY+ RE + + L+FV+TKHH E+L + + L + YG +DQ
Sbjct: 275 FIYCPINYREAALLYICRELVPKTWRLLVFVATKHHCEYLTSILQANNLRATCIYGSLDQ 334
Query: 303 DARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGR 362
R + +S F + LI TDVAARGIDIP L+ VIN++FP K +VHRVGR+ARAG
Sbjct: 335 KQRTLALSEFDKGRYSILISTDVAARGIDIPNLNCVINYNFPSSGKNYVHRVGRSARAGS 394
Query: 363 TGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGR 422
G S + +++ Y LD+ L + + S ++ + + + + + G+
Sbjct: 395 YGLCVSIIEGDELPYCLDVMLHIGIKFHSMRSSDDAVATFLNNCNTLGVDCSTFACLVGK 454
Query: 423 -------------FPQTVIDLV-SDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSK 468
P ++D++ +D +R + + D+ + Q+T NA + + + S
Sbjct: 455 HATHSPFQGLVASIPGHLLDVIYADVLRTLGEYGQDVRTQQKTANNAMKQVNSMRKSASP 514
Query: 469 ESIRRGKDLPREGL---HPMFK-----NVLEGGE---------LMALAFSERLKAFRPKQ 511
S R K++ + HP+ + V G+ L + +S +L + +
Sbjct: 515 LSTERAKEIITGNMIYEHPLVRKLDIETVGSAGKEKQEAALEHLSKVLYSFKLPTHQLEL 574
Query: 512 TILEAEGEA---------------ARSKHLQGPSSQWV---DVMKKKRAVHEKIIN---- 549
++E+ G+A AR + L Q + + + A +
Sbjct: 575 RVMESNGDASSVAMLNMRRIVEKKARERQLVATELQKLGKDNALDNSGASDTGFVGLKEP 634
Query: 550 LVHQQRSSKSMEKEVEPEADSLMAKEIKETHGSKRKAKTFKDEEYFISSVPT-----NHH 604
LV + +E+ D+L ++I T + + D Y P
Sbjct: 635 LVKYYMTKDDLERYTILGKDALEKRKINATQAG---SSSHGDNLYISDIQPPKPESKGSF 691
Query: 605 MEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQK--QKQVYH--WDKRGKKY----IKL 656
++A +V+ + +E + D + DD GL +++ + W+ K+Y IK
Sbjct: 692 IDAQTAVKGVLVGSKDSIENVIADFIPDDREGLASILRRKTFERRWNPLRKRYENVEIKA 751
Query: 657 NNGERVSASGKVVK--------TESGAK----VKATKTGIYKKWKERSHKKVYLKGASNE 704
+ +S +G V K ES K TK +YKKWK+++ V G +
Sbjct: 752 EEPKTISNAGSVGKKKITQKRFNESTGKWIEVTPDTKQTLYKKWKQKTSLSVMPGGQQDT 811
Query: 705 GNAEETTSVPGGRHLGGNNR 724
E + G+ LG R
Sbjct: 812 VTDMEARELLTGQGLGRRRR 831
>gi|308159948|gb|EFO62462.1| ATP-dependent RNA helicase [Giardia lamblia P15]
Length = 901
Score = 318 bits (814), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 243/848 (28%), Positives = 400/848 (47%), Gaps = 122/848 (14%)
Query: 25 FESLN-LSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQ 83
FE L LSP V +AI GY T IQ+ +P+I+ G D +++TGSGKTAA+ +P++
Sbjct: 35 FEKLGKLSPPVLKAIHSLGYSTLTSIQKAAIPVIIDGGDACIVSKTGSGKTAAYSIPLVN 94
Query: 84 RLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD--LRISLLVGGDSMESQFEELA 141
L H G+R L+++PTR+L +Q ++L R+TD LR+ LLVGG+++E QF L
Sbjct: 95 LLGCHRATTGIRGLVIAPTRELCVQIGGVIRKLSRFTDPELRVCLLVGGEALEKQFTALT 154
Query: 142 QNPDIIIATPGRLMHHLSEVEDM--SLKSVEYVVFDEADCLFGMGFAEQLHKIL------ 193
NPDII+ TPGR++H +V LKS+EYV FDE+D +F M F +Q+++IL
Sbjct: 155 ANPDIIVCTPGRILHIHDQVSTFKSQLKSIEYVCFDESDRMFEMNFQQQVNEILDLLPTE 214
Query: 194 ---GQLSENR--------QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLA 242
G ++E + Q ++ SAT+P+ LA F+KA L++P ++ + D + +L
Sbjct: 215 RTGGHIAETKSARDFLGYQIIMVSATMPNNLAVFSKARLQNPAIIAAEDDLVLPNELTNQ 274
Query: 243 FFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQ 302
F + AALLY+ RE + + + L+FV+TKHH E+L + + L + YG +DQ
Sbjct: 275 FIYCPINYREAALLYICRELVPKNWRLLVFVATKHHCEYLTSVLQANNLRATCIYGSLDQ 334
Query: 303 DARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGR 362
R + +S F + LI TDVAARGIDIP L+ VIN++FP K +VHRVGR+ARAG
Sbjct: 335 KQRTLALSDFDKGRYSILISTDVAARGIDIPNLNCVINYNFPSSGKNYVHRVGRSARAGS 394
Query: 363 TGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGR 422
G S + +++ Y LD+ L + + S + + + + + + G+
Sbjct: 395 YGLCISIIEGDELPYCLDVMLHIGIKFHSMRSSDAAVATFLNNCNTLGVDCSTFACLVGK 454
Query: 423 -------------FPQTVIDLV-SDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSK 468
P ++D++ +D +R + + D+ + Q+T NA + + + S
Sbjct: 455 HATQSPFQGLVASIPGHLLDVIYADVLRTLGEYGQDIRTQQKTANNAMKQVNSMRKSASP 514
Query: 469 ESIRRGKDLPREGL---HPM-----FKNVLEGGE---------LMALAFSERLKAFRPKQ 511
S R K++ + HP+ K GE L + +S +L + +
Sbjct: 515 LSTERAKEIITGNMIYEHPLVRKLDIKATGSAGEEKQEAALEHLSKVLYSFKLPTHQLEL 574
Query: 512 TILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKSMEKEV------- 564
++E+ G+A+ L +++KK E+ + QR K +
Sbjct: 575 RVMESNGDASSVAML-----NMRRIVEKK--ARERQLVATELQRFGKDSSLDTSGASDTG 627
Query: 565 -----EPEADSLMAK--------------EIKETHGSKRKAKTFKDEEYFISSV------ 599
EP M K E + T+ + + + + +IS +
Sbjct: 628 FTGLKEPLVKYYMTKDDLERYTILGKDALEKRRTNNATQAGNSPHGDNLYISDIQPPKPE 687
Query: 600 PTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQK--QKQVYH--WDKRGKKY-- 653
++A +V+ + +E+ + D + DD GL +++ + W+ K+Y
Sbjct: 688 SKGSFIDAQTAVKGVMVGTKDSIESVIADFIPDDKEGLASILRRKTFERRWNPLRKRYEN 747
Query: 654 --IKLNNGERVSASGKVVK--------TESGAK----VKATKTGIYKKWKERSHKKVYLK 699
IK + +S +G V K ES K TK +YKKWK+++ V
Sbjct: 748 VEIKAEEPKTISNAGPVGKKKITQKRFNESTGKWIEVTPDTKQTLYKKWKQKTSLSVMPG 807
Query: 700 GASNEGNAEETTSVPGGRHLG-----GNNRKFRGGKNQQRSVPNAHVCSEIK----DLDQ 750
G + E + G+ LG R G+ R VP + V + I+ Q
Sbjct: 808 GQQDTVTDMEARELLTGQGLGRRRRMAIERAINSGR-LVRKVPASKVDTSIERSMPTRAQ 866
Query: 751 VRKERQKK 758
V KER+ K
Sbjct: 867 VIKEREGK 874
>gi|388856698|emb|CCF49658.1| related to DBP10-putative ATP-dependent RNA helicase involved in
ribosome biogenesis [Ustilago hordei]
Length = 1182
Score = 310 bits (794), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 199/543 (36%), Positives = 304/543 (55%), Gaps = 90/543 (16%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGA--DVVAMARTGSGKTAAFLVPML 82
F+S+ L P++ R++ +G+ PTPIQR+ +P I++ DVV MARTGSGKT A+L+P++
Sbjct: 149 FQSMGLHPSLLRSLLIRGFSTPTPIQRQAIPAIIAQPPRDVVGMARTGSGKTLAYLIPLI 208
Query: 83 QRLN-QHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD-------------LRISLLV 128
RLN +H G+++LIL P+R+LA+Q L+ KE+ R +R +++V
Sbjct: 209 NRLNGRHSSTFGIKSLILCPSRELAVQILRVGKEIARGWKGDPGKDQDSRGRAIRWAMIV 268
Query: 129 GGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQ 188
GG+S++ QF ++ NPD++IATPGR++H E+ ++ LKSVEYVVFDEAD LF MGFAEQ
Sbjct: 269 GGESLDEQFGIMSNNPDVVIATPGRMLHLTVEM-NLDLKSVEYVVFDEADRLFEMGFAEQ 327
Query: 189 LHKILGQLSENRQTLLFSATLPSALAEFAKAGLR-DPHLVRLDVDTKISPDLKLAFFTLR 247
L ++L +L RQTLLFSATLP L EFAKAGL+ +P LVRLD D+KIS DL + FF+++
Sbjct: 328 LEEMLLRLPPTRQTLLFSATLPKKLVEFAKAGLQANPKLVRLDADSKISADLSMTFFSVK 387
Query: 248 QEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKI 307
EK AALL ++R+ I + +F +EG P +G+ + K
Sbjct: 388 PSEKEAALLLLLRDLIGVPLGEQAAPDYEEEAQFNQDNSNDEGGTPHRGFGNRKSNF-KG 446
Query: 308 HVSRFRARK---------------TMFLIVT-------------------------DVAA 327
S+F ++ T+ T D A
Sbjct: 447 KPSKFNGKRKRTGPGGALELLPHQTIIFCATKHHVEYLLLLLTTTGYACSHIYSSLDQAT 506
Query: 328 RGI-----------------------DIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTG 364
RGI D+P+L++V+N+DFPP+ + FVHRVGR ARAGR G
Sbjct: 507 RGIQMSRFRRGQTSLLIVTDVAARGIDLPVLEHVVNFDFPPQSRTFVHRVGRTARAGRNG 566
Query: 365 TAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGET-IYGRF 423
A+S T+ ++ YL DL LFL++P+ + S V +G + + E+ + G F
Sbjct: 567 WAWSMCTNAELPYLCDLQLFLARPLIS--SHMAVAKIAEGKDVEFADPLNLHESLVLGTF 624
Query: 424 PQTVIDLVSDRV-REIIDSSA----DLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLP 478
P+ +DL ++ + +I++++ D+ +L++ A + Y K+ S+ES RR K++
Sbjct: 625 PREALDLETEFITSSLINTNSSTAHDIPALRQVAERAQQKYEKSIAKASQESHRRAKEMI 684
Query: 479 REG 481
+ G
Sbjct: 685 KAG 687
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 91/198 (45%), Gaps = 33/198 (16%)
Query: 588 TFKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRL----EAAVLDLVADDS--GGLQKQK 641
+F+D +++S E G S+ + Q G++ AA DL D++ G ++
Sbjct: 944 SFRDPNFYLSYEQEGSRSERGYSLNNPQSNGIDSFIQQASAASFDLAGDETVLGAQTQRP 1003
Query: 642 QVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKG 700
V WD + KK+I+ G + + K+++TESG ++ A+ ++G +++WK R + K
Sbjct: 1004 NVTRWDSKKKKFIQGTVG---ADNKKMIRTESGVRLPASFRSGRFEEWK-REKRVDIPKT 1059
Query: 701 ASNEGNAEETTSVPGGRHLGGNNRKFRG----------------GKNQQRSVPNAHVCSE 744
EG +E GG +G +KFR GK + E
Sbjct: 1060 GETEGRGDEA----GGSVMG--LKKFRHNKVTPSKSALAAAQTFGKGRPGQAKRQAAKDE 1113
Query: 745 IKDLDQVRKERQKKADRI 762
+K Q++KER+ K +R+
Sbjct: 1114 VKSARQIQKEREIKQNRM 1131
>gi|169608063|ref|XP_001797451.1| hypothetical protein SNOG_07098 [Phaeosphaeria nodorum SN15]
gi|160701550|gb|EAT85749.2| hypothetical protein SNOG_07098 [Phaeosphaeria nodorum SN15]
Length = 798
Score = 305 bits (782), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 154/310 (49%), Positives = 205/310 (66%), Gaps = 39/310 (12%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+++ L+ + +AI +KG+K+PTPIQRK +PLIL G DVV MARTGSGKTAAF++PM++R
Sbjct: 80 FQAMGLNVALLKAIAQKGFKIPTPIQRKAVPLILQGDDVVGMARTGSGKTAAFVIPMIER 139
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L H + G R +I+SP+R+LALQTLK KE GR TDLR LLVGGDS+E QF + NP
Sbjct: 140 LKTHSAKVGARGVIMSPSRELALQTLKVVKEFGRGTDLRTILLVGGDSLEEQFNSMTTNP 199
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
DIIIATPGR +H E+ + L SV+Y+VFDEAD LF MGFA QL +IL L +RQTLL
Sbjct: 200 DIIIATPGRFLHLKVEM-GLDLSSVQYIVFDEADRLFEMGFAAQLAEILYALPTSRQTLL 258
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSATLP +L EFA+AGL++P L+RLD ++KISPDLK A+FT++ ++ AL++++ I
Sbjct: 259 FSATLPKSLVEFARAGLQEPKLIRLDAESKISPDLKSAYFTIKSGDRDGALIHLLENVIK 318
Query: 265 ------------------------------------SDQQTLIFVSTKHHVEFLNVLFRE 288
++ T+IF +TKH VE+L+ L +
Sbjct: 319 MPVGQTEVWKQAKEEADNLSKGKKRKRGSGNPKDAPVEESTIIFAATKHRVEYLSTLLKA 378
Query: 289 EGLEPSVCYG 298
G V YG
Sbjct: 379 AGY--PVSYG 386
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 83/368 (22%), Positives = 144/368 (39%), Gaps = 66/368 (17%)
Query: 444 DLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREG----LHPMFKNVLEGGELMALA 499
DL +L R Y +T+ S +S+ R KDL + H +F + +
Sbjct: 424 DLVNLLNVAEKGERQYQRTRNQASNQSVHRAKDLASDSKFAETHMLFNDEMHDALRAKED 483
Query: 500 FSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKS 559
ER++ FRP +T+ E +G +S+ ++M+K+R E+ +++
Sbjct: 484 MLERIQGFRPAETVFEI--------GKRGTNSEAAEIMRKRRVAVERQKTKQAFNKANDE 535
Query: 560 MEKEVEPEADSLMAKE------------------------IKETHGSKRKAKTFKDEEYF 595
P AD+L E + + K ++ +E+F
Sbjct: 536 SSGLTRPTADALPDDELDSEDDQQAAVGDYESESDELEVTVSQPESKKSGKDVWRSDEFF 595
Query: 596 ISSVP-TNHHMEAGLSVRSDQGFGLNRLEAA---VLDLVADDSGGL-QKQKQVYHWDKRG 650
+S +P N E V+ N + AA + LV D+ G K WDK+
Sbjct: 596 MSYLPKENFAEEKAYGVQGGDAGNSNFVSAARSAEMSLVNDEIQGFADASKPRMRWDKKS 655
Query: 651 KKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNAEE 709
KKY+ N E S K+++ ESG K+ A+ ++G + W++ + K+ G N
Sbjct: 656 KKYVSRANDEDGSKGAKMIRGESGQKIAASFRSGRFDDWRKANKVKMQRVGEMEAPNRST 715
Query: 710 TTSVPGGRHLGGNNRKFRGGKNQQRSVPNAHVC---------------------SEIKDL 748
+ G R+ ++ + K R + HV +E+KD+
Sbjct: 716 QFNSGGPRY---KHKAEKAPKQADRYRDDYHVQKQRVQEAKEKRIGHFKDGGAKNELKDV 772
Query: 749 DQVRKERQ 756
D VRKER+
Sbjct: 773 DTVRKERR 780
>gi|401396617|ref|XP_003879866.1| putative ATP-dependent RNA helicase [Neospora caninum Liverpool]
gi|325114274|emb|CBZ49831.1| putative ATP-dependent RNA helicase [Neospora caninum Liverpool]
Length = 1089
Score = 304 bits (779), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 165/362 (45%), Positives = 230/362 (63%), Gaps = 2/362 (0%)
Query: 25 FESLNLS-PNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQ 83
FE+L LS P AIK G+ PTPIQR+ +PL+L D + M+RTGSGKTA FL+P+L
Sbjct: 25 FEALGLSTPTSLAAIKGLGFSQPTPIQRRAIPLLLKRKDCILMSRTGSGKTACFLLPLLD 84
Query: 84 RLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L QH GVRA++++PTR+L Q + +L + LR+ L+GG++ QF L++N
Sbjct: 85 LLGQHSSVVGVRAVLIAPTRELVAQIHRVCHKLLSSSSLRLCCLLGGENYSKQFLALSRN 144
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
PDI++ T GR L + + +SL + ++V DEAD +F +G+ EQL + L N+Q +
Sbjct: 145 PDILLTTVGRGTQLLQD-KVLSLAAASFLVLDEADRIFELGWKEQLSILFAALPANKQVV 203
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
L SATLP L FAK GLRDP VRL+ + +S DL++ F +R +K LL+++++ I
Sbjct: 204 LVSATLPGDLVHFAKLGLRDPEFVRLEKECTLSDDLQMQFLFVRGAQKIPTLLFLLKQTI 263
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+Q L+F ST+H FL +V YG MDQ R ++ F+ K L+VT
Sbjct: 264 QKKEQVLVFASTRHQATFLQCFCERLAFPSAVIYGAMDQTERVQTLAAFKKGKISVLLVT 323
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHL 383
DVAARG+DIP L +VIN+DFP K+FVHRVGR ARAGR GTAFS VT +D+ Y ++L
Sbjct: 324 DVAARGLDIPHLPSVINFDFPSSAKLFVHRVGRTARAGRAGTAFSLVTGDDLPYAVELMS 383
Query: 384 FL 385
FL
Sbjct: 384 FL 385
Score = 42.7 bits (99), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 10/101 (9%)
Query: 619 LNRLEAAVLDLVADDSGGLQKQKQVYH--WDKRGKKYIKLNNGERVSASGKVVKTESGAK 676
L RL+ A +DL+AD+ +++Q+ WD + +KYI + SA+G+ VK + G
Sbjct: 839 LLRLDEAAMDLIADEDDDMKRQRATEQQRWDPKKRKYIMMKVD---SATGRAVKRKRGTD 895
Query: 677 VKATKTGI---YKKWKERSHKKVYLKGASNEGNAEETTSVP 714
+ KT Y +W + +++ G E + E T + P
Sbjct: 896 KQEEKTSSAHRYAQWCRETKRRIQRVG--EEESPELTAAAP 934
>gi|359322902|ref|XP_003433427.2| PREDICTED: ATP-dependent RNA helicase DDX54 [Canis lupus
familiaris]
Length = 789
Score = 288 bits (737), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 201/613 (32%), Positives = 318/613 (51%), Gaps = 75/613 (12%)
Query: 196 LSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDL--------KLAFFTLR 247
LS R+ L + L +F GLR ++ D T +SP + +FF +R
Sbjct: 172 LSPTRELALQTMKFTKELGKFT--GLRTALILGGDNPTPMSPPCEHTVPLSRQTSFFLVR 229
Query: 248 QEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKI 307
++ K A LL+++R + QT++FV+TKHH E+L+ L +G+ + Y +DQ ARKI
Sbjct: 230 EDTKAAVLLHLLRTVVRPQDQTVVFVATKHHAEYLSELLTTQGVSCTHIYSALDQTARKI 289
Query: 308 HVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAF 367
++++F K LIVTD+AARG+DIPLLDNVIN+ FP K K+F+HRVGR ARAGR+GTA+
Sbjct: 290 NLAKFTHNKCSALIVTDLAARGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAY 349
Query: 368 SFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTV 427
S V +++ YLLDLHLFL + + A E L +A + + GR PQ+V
Sbjct: 350 SLVAPDEVPYLLDLHLFLGRALTPARPHEGSL------------GVAGVDGVLGRVPQSV 397
Query: 428 IDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGK--DLPREGLHPM 485
+D ++ I+ SS +L L R NA + Y +++P PS ESI+R K DL GLHP+
Sbjct: 398 VDDEESGLQSILTSSLELGGLSRVADNAQQQYVRSRPAPSPESIKRAKELDLTGLGLHPL 457
Query: 486 FKNVLEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHE 545
F + E EL L + +K +R + TI E A S+ L SSQ VM+ KR
Sbjct: 458 FSSRFEEKELQRLKLVDSIKNYRSRATIFEIN---ASSRDL---SSQ---VMRAKRQKDH 508
Query: 546 KIINLVHQQRSSKSME--------------------------KEVEPEADSLMAKEIKET 579
K I Q R + + K +E +M ++ ++
Sbjct: 509 KAIASFQQGRRGRQEDTAGPAPGCPASQEEKPEEDEEEEAAGKSIEEVFTEVMGRKRQQP 568
Query: 580 ---HGSKRKAKT--FKDEEYFISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDS 634
G+KR+ + +D E+++ P + E GLS+ D G ++ AVLDL+ D++
Sbjct: 569 GPEGGAKRRREEARHRDLEFYVPYRPKDFDSERGLSISGDGGAFEQQVAGAVLDLMGDEA 628
Query: 635 GGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSH 693
L + +Q WD++ K+++ G+ K +KTESG + ++ K +Y+KWK++
Sbjct: 629 QNLTRGRQQLKWDRKKKRFV----GQSGQEDKKKIKTESGRYISSSYKRDLYQKWKQK-- 682
Query: 694 KKVYLKGASNEGNAEETTSVPGGRHLGGNNRKFRGGKNQQRSVPNAHVCSEIKDLDQVRK 753
+K+ + + EG + + R G R + + P V SE+K Q+ K
Sbjct: 683 QKIDDRDSEEEGTSHQRGPE---RRGGKRGRGQGAAQPRSPGAPAGRVRSELKTKQQILK 739
Query: 754 ERQKKADRIAFMK 766
+R ++A ++ F++
Sbjct: 740 QR-RRAQKLRFLQ 751
Score = 175 bits (444), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 83/120 (69%), Positives = 100/120 (83%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
R + KKK KSGGF+S+ LS VF+ I +KGYKVPTPIQRKT+P+IL G DVVAMARTGSG
Sbjct: 86 RAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSG 145
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTA FL+PM +RL H Q G RALILSPTR+LALQT+KFTKELG++T LR +L++GGD+
Sbjct: 146 KTACFLIPMFERLKTHSAQTGARALILSPTRELALQTMKFTKELGKFTGLRTALILGGDN 205
>gi|226468478|emb|CAX69916.1| hypotherical protein [Schistosoma japonicum]
Length = 259
Score = 284 bits (726), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 139/221 (62%), Positives = 176/221 (79%), Gaps = 2/221 (0%)
Query: 16 QKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTA 75
+K KSGGF+++ LS F I +KGYK+PTPIQRKT+P+ILSG DVVAMARTGSGKTA
Sbjct: 23 NRKNKKSGGFQAMGLSSATFNGIIKKGYKLPTPIQRKTIPIILSGRDVVAMARTGSGKTA 82
Query: 76 AFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMES 135
AFL+P+ ++ H+P G RALI+SPTR+LALQTL FTKELGRYT L+ ++++GGD ME
Sbjct: 83 AFLIPLFEKFPCHLPTGP-RALIVSPTRELALQTLNFTKELGRYTPLKATVILGGDKMED 141
Query: 136 QFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQ 195
QF L +PDIIIATPGR +H L E+ ++SLK++EYVVFDE D LF +GFAEQL + L +
Sbjct: 142 QFAALHSSPDIIIATPGRFLHILMEM-NLSLKTIEYVVFDEGDRLFELGFAEQLSETLKR 200
Query: 196 LSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKIS 236
L +RQTL+FSATLP L EFA+AGL DP L+RLD++ K+S
Sbjct: 201 LPRSRQTLIFSATLPKNLVEFARAGLVDPILLRLDLNYKLS 241
>gi|403217984|emb|CCK72476.1| hypothetical protein KNAG_0K01110 [Kazachstania naganishii CBS
8797]
Length = 1001
Score = 283 bits (723), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 137/250 (54%), Positives = 185/250 (74%), Gaps = 1/250 (0%)
Query: 14 EKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGK 73
+ +K+K K G F S LS + + RKG++ PTPIQRKT+PLIL D+V MARTGSGK
Sbjct: 129 QAEKQKFKKGSFASFGLSKAILSNVTRKGFRQPTPIQRKTIPLILQNRDIVGMARTGSGK 188
Query: 74 TAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSM 133
TAAF++PM+++L H + GVRA+ILSP+R+LALQT K+ + T LR LL GGDS+
Sbjct: 189 TAAFVLPMIEKLKTHSSKIGVRAIILSPSRELALQTHNVFKDFSKGTHLRSVLLTGGDSL 248
Query: 134 ESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKIL 193
E QF + NPD++IATPGR +H E+ ++ LK+VEY VFDEAD LF MGF EQL+++L
Sbjct: 249 EEQFGMMMSNPDVVIATPGRFLHLKVEM-NLVLKTVEYAVFDEADRLFEMGFQEQLNELL 307
Query: 194 GQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHA 253
L +RQTLLFSATLPS+L EFAKAGL +P LVRLD ++KIS +L++ F +++ +E+ A
Sbjct: 308 AALPSSRQTLLFSATLPSSLVEFAKAGLTNPVLVRLDAESKISENLQMLFLSIKNDEREA 367
Query: 254 ALLYMIREHI 263
LLY+++ I
Sbjct: 368 NLLYLLQNVI 377
Score = 204 bits (519), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 161/524 (30%), Positives = 266/524 (50%), Gaps = 65/524 (12%)
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
+ S+ T++FV T+HHVE+++ + ++ G S YG +DQ+ARK + FR T L+V
Sbjct: 435 LPSENATVVFVPTRHHVEYISQVLKDCGYLVSYIYGSLDQNARKSQLYNFRLGLTSILVV 494
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
TDVAARG+DIP+L NVIN+ P KIF+HRVGR ARAG G A++ V+ ++ YLLDL
Sbjct: 495 TDVAARGVDIPMLANVINYSLPSSSKIFIHRVGRTARAGNKGWAYTIVSESELPYLLDLE 554
Query: 383 LFLSKPIRAAPSEEEVLLDMDGVMSK---IDQ----------AIANGETI-YGRFPQTVI 428
LFLSK + P +L+ + K IDQ A++ + I G P+ +
Sbjct: 555 LFLSKKVLLTP-----MLEAKNAILKQKWIDQGNDEMSFKPPAVSYTDRIVLGSCPRLDL 609
Query: 429 DLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKN 488
+ + D + I++++ DL+ ++ T A +LY +T+ S ES++R K++ G +N
Sbjct: 610 ESMGDLFKNILENNFDLSLMKATSLKAEKLYFRTRTHASLESLKRSKEVIASGWDE--QN 667
Query: 489 VLEGG--ELMALAFSERLKAFRPKQTILE----AEGEAA-----RSKHL---QGPSSQWV 534
++ G E + F +L+ R K+T+ E + E + R + L Q + +
Sbjct: 668 IIFGSNVEKEKINFLAKLQNRRNKETVFEFSRNPDDEMSVFMKRRRRQLAPVQKKAKERR 727
Query: 535 DVMKKKR--AVHEKIINLVHQQRSSKSME----------KEVEPEADSLMAKEIKETHGS 582
++++K+R + I + + Q ++ ME K+ E +AD L+ K+ ++
Sbjct: 728 ELLEKERRSGLSHSIEDEIFNQNNNTEMETGYTVSEEALKQFE-DADELLQKQSEK---- 782
Query: 583 KRKAKTFKDEEYFISS-VPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQK 641
K K K +KD +F+S P + L V S GF N A DL DD + KQ
Sbjct: 783 KTKPKNYKDPNFFLSHYAPAADIQDKQLQVTS--GF-TNDAAQAAYDLNDDDKVQVHKQT 839
Query: 642 QVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKG 700
WDK+ KKY+ + + + K + ESG K+ A+ ++G + +W + H K G
Sbjct: 840 ATVKWDKKRKKYVNMQGID----NKKYIIGESGQKIAASFRSGKFDEWSKARHIKPLKVG 895
Query: 701 ASNEGNAEETTSVPGGRHLGGNNR----KFRGGKNQQRSVPNAH 740
A + P GR NR K++ +++ +P+ H
Sbjct: 896 AKEDSIETHLLRDPTGRSNISGNRTASGKYKHKQDKAPKLPDKH 939
>gi|238589821|ref|XP_002392132.1| hypothetical protein MPER_08336 [Moniliophthora perniciosa FA553]
gi|215457763|gb|EEB93062.1| hypothetical protein MPER_08336 [Moniliophthora perniciosa FA553]
Length = 335
Score = 282 bits (721), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 156/335 (46%), Positives = 207/335 (61%), Gaps = 50/335 (14%)
Query: 28 LNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGA--DVVAMARTGSGKTAAFLVPMLQRL 85
+ L P++ R++ +GY+VPTPIQR ++P +L+ D+V MARTGSGK+ A+++P++QRL
Sbjct: 1 MGLHPSLLRSLSLQGYRVPTPIQRLSIPALLANPPQDLVGMARTGSGKSLAYMIPLVQRL 60
Query: 86 N-QHVPQGGVRALILSPTRDLALQTLKFTKELGRY--------------------TDLRI 124
+H G RALIL PTR A+Q LK KEL R +LR
Sbjct: 61 GGRHSTTFGARALILLPTRVPAIQILKVGKELTRGWGHDKGVHAGDSKDTEDFKGANLRW 120
Query: 125 SLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG 184
SL+VGG+ ++ QFE + NPD+IIATPGRL+H E+ ++ LKSV YVVFDEAD LF MG
Sbjct: 121 SLIVGGEGLDEQFETMTNNPDVIIATPGRLLHLAVEM-NLDLKSVHYVVFDEADRLFEMG 179
Query: 185 FAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFF 244
F L++IL +L RQTLLFSATLP +L EFAKAGL +P LVRLD ++KIS DLK+AFF
Sbjct: 180 FETALNEILARLPTTRQTLLFSATLPKSLVEFAKAGLENPKLVRLDAESKISSDLKMAFF 239
Query: 245 TLRQEEKHAALLYMI--------------------------REHISSDQQTLIFVSTKHH 278
+++Q EK A LL ++ RE ++ QTLIF +TKHH
Sbjct: 240 SVKQAEKDACLLSLLRDVIKMPLVNAQAKTTDTEKIGKGKGREVVTMPHQTLIFAATKHH 299
Query: 279 VEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFR 313
VE+L L G S YG +DQ AR + +FR
Sbjct: 300 VEYLTNLLTTAGYAVSHIYGSLDQAARTFQMEQFR 334
>gi|406604990|emb|CCH43589.1| hypothetical protein BN7_3142 [Wickerhamomyces ciferrii]
Length = 958
Score = 280 bits (716), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 137/248 (55%), Positives = 182/248 (73%), Gaps = 1/248 (0%)
Query: 16 QKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTA 75
+ K+K+G F S LS + I +KG+K PTPIQRKT+PLIL D+V MARTGSGKTA
Sbjct: 108 ETNKAKAGSFASFGLSKFILNNISKKGFKQPTPIQRKTIPLILQNRDIVGMARTGSGKTA 167
Query: 76 AFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMES 135
AF +P+++RL H + G RA++LSP+R+LA+QT K KE R TDLR LL+GGDS+E
Sbjct: 168 AFSLPLVERLKIHSAKVGARAIVLSPSRELAIQTYKVIKEFSRGTDLRSVLLIGGDSLED 227
Query: 136 QFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQ 195
QF + NPDI+IATPGR +H E++ + LK+VEYVVFDEAD LF MGF EQL+++L
Sbjct: 228 QFSLMMSNPDIVIATPGRFLHLKVEMQ-LDLKTVEYVVFDEADRLFEMGFEEQLNELLSA 286
Query: 196 LSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAAL 255
L NRQ+LLFSATLP +L +FAKAGL +P LVRLD ++KIS L++AF + + E+ L
Sbjct: 287 LPPNRQSLLFSATLPRSLVDFAKAGLTNPVLVRLDAESKISDQLEMAFISSKNGEREGNL 346
Query: 256 LYMIREHI 263
L ++++ I
Sbjct: 347 LNILQDVI 354
Score = 207 bits (528), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 188/586 (32%), Positives = 280/586 (47%), Gaps = 96/586 (16%)
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ S T+IFV T+HHVE++ L ++ G S YG +DQ ARK + FRA + L+
Sbjct: 407 QLPSIHSTIIFVPTRHHVEYVTTLLKDTGYAVSYIYGTLDQHARKRQLLNFRAGLSPILV 466
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
VTDVAARGIDIP+L NVIN+ P KIFVHRVGR ARAG G A+S V+ ++ YLLDL
Sbjct: 467 VTDVAARGIDIPVLANVINYSLPGSSKIFVHRVGRTARAGNKGWAYSIVSENELPYLLDL 526
Query: 382 HLFLSKPIRAAPSEE---EVLLDMDGVMSKIDQAIANGE-TIYGRFPQTVIDLVSDRVRE 437
LFL K I P E E+L + G S ++ I+ E + G+ P+ ++ +++
Sbjct: 527 ELFLGKKILLTPMHEKKCEILKEQQG-DSYVEPKISYTERMVLGQAPRINVESMTELFNN 585
Query: 438 IIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVLEGGEL-- 495
I+ + DL LQ T A +LY KT+ S ES++R K++ G +N+L G L
Sbjct: 586 ILSNDYDLKVLQGVSTKAEKLYFKTRTAASIESVKRAKEVKHSGWDE--QNLLFGKNLEK 643
Query: 496 MALAFSERLKAFRPKQTILE--------AEGEAARSKHL---QGPSSQWVDVMKKKR--- 541
+ F +L+ R K+T+ E + R + + Q + + ++++K+R
Sbjct: 644 EKIDFLAKLQNRRHKETVFEFGKRDDSLVDLMNTRRRQIAPVQRRAKERQELLEKERLAG 703
Query: 542 ---AVHEKII----NLVHQQRSSKSMEKEVEPEADSLMAKEIKETHGSKRKAKTFKDEEY 594
+ ++I+ N V + K +E E E ++ K++ K+F+D +
Sbjct: 704 LTHGIEDEILKGDDNEVGYSVNDKVLEDEFET---------AEQLLEKKKEKKSFRDPNF 754
Query: 595 FISSVPTNHHMEAGLSVRSDQGFGLNR-----LEAAVLDLVADDSGGLQKQKQVYHWDKR 649
++S H+ A SV DQ LN + A DL DD+ + KQ Q WDK+
Sbjct: 755 YMS-----HY--APSSVIQDQQLNLNNGFTNDAQKATFDLNNDDNMQVNKQTQTMQWDKK 807
Query: 650 GKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNAE 708
KY+ S K + ESG ++ A+ ++G + WK + K LK S E
Sbjct: 808 AGKYVNSK-----STDKKYIIGESGQRLPASFRSGRFDAWK-KGKKIEGLKVGSRE-TVN 860
Query: 709 ETTSVPGGRHLGGNNRKFRGGK---------------NQQRSVPNA-----HV------- 741
E T V G RKF K Q++ V NA HV
Sbjct: 861 EFTGVNNKSIGSGGGRKFNHKKVQAPRAPDKKRDDYHKQKKKVENALEKGVHVKGFQRKG 920
Query: 742 --CSEIKDLDQVRKERQKKADRIAFMKGKTQKGKKFSKNGKRGKPR 785
+EIK +Q+RK R+ K R +K + SKN K GK R
Sbjct: 921 QGSNEIKSTEQIRKARELKEKR-------REKNARPSKNSK-GKRR 958
>gi|149063450|gb|EDM13773.1| similar to ATP-dependent RNA-helicase (predicted) [Rattus
norvegicus]
Length = 297
Score = 278 bits (711), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 139/212 (65%), Positives = 167/212 (78%), Gaps = 1/212 (0%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
R + KKK KSGGF+S+ LS VF+ I +KGYKVPTPIQRKT+P+IL G DVVAMARTGSG
Sbjct: 85 RAQNKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSG 144
Query: 73 KTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
KTA FL+PM +RL Q G RALILSPTR+LALQT+KFTKELG++T L+ +L++GGD
Sbjct: 145 KTACFLLPMFERLKARSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDK 204
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
ME QF L +NPDIIIATPGRL+H E+ ++ L+SVEYVVFDEAD LF MGFAEQL +I
Sbjct: 205 MEDQFAALHENPDIIIATPGRLVHVAVEM-NLKLQSVEYVVFDEADRLFEMGFAEQLQEI 263
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDP 224
+G+L QT+LFSATLP L EFA+A P
Sbjct: 264 IGRLPGGHQTVLFSATLPKLLVEFARADFLLP 295
>gi|68533609|gb|AAH98602.1| Zgc:111908 protein [Danio rerio]
Length = 511
Score = 278 bits (711), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 167/416 (40%), Positives = 230/416 (55%), Gaps = 81/416 (19%)
Query: 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEV 161
TR+L K K+ G + + L++GGDSM+ QF L +NP
Sbjct: 63 TRELVRAQNKKKKKSGGFQSM--GLILGGDSMDDQFAALHENP----------------- 103
Query: 162 EDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGL 221
+ RQTLLFSATLP + EFA+AGL
Sbjct: 104 ------------------------------------DARQTLLFSATLPKLIVEFARAGL 127
Query: 222 RDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEF 281
+P L+RLDVDTK+S LKL+FF+LR ++K A LL+++R + +QT++FV+TKHHVE+
Sbjct: 128 TEPVLIRLDVDTKLSEQLKLSFFSLRLDDKPALLLHLLRNVVKPQEQTVVFVATKHHVEY 187
Query: 282 LNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINW 341
L L EG++ S Y +DQ ARKI + F RK M L+VTDVAARGIDIPLLDNVIN+
Sbjct: 188 LKELLSAEGVDCSCIYSALDQTARKISIGGFVHRKVMLLLVTDVAARGIDIPLLDNVINY 247
Query: 342 DFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLD 401
+FP KPK+F+HRVGR ARAGR GTA+S V +++ YL DLH FL +P++ A E +
Sbjct: 248 NFPCKPKLFLHRVGRVARAGRGGTAYSLVCPDEVPYLYDLHRFLGRPMQLAHPEHTQ--E 305
Query: 402 MDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSK 461
DGV +GR PQ+V+D ++ +S DL +L+R NA++ Y K
Sbjct: 306 ADGV--------------FGRVPQSVLDDEECQLITAHQNSLDLQNLRRVSENAYKQYLK 351
Query: 462 TKPLPSKESIRRGKD--LPREGLHPMFKNVLEGGELMALAFSERLKAFRPKQTILE 515
SI+R ++ L +HP+ LE EL L + +K ++ K TI E
Sbjct: 352 --------SIKRSRNTQLTDMAVHPLLGCGLEKMELDRLLMVDTIKGYKAKSTIFE 399
>gi|241953401|ref|XP_002419422.1| ATP-dependent RNA helicase, putative; ribosome biogenesis protein,
putative [Candida dubliniensis CD36]
gi|223642762|emb|CAX43016.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
Length = 933
Score = 276 bits (706), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 136/246 (55%), Positives = 184/246 (74%), Gaps = 2/246 (0%)
Query: 18 KKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77
KK+K+G F S L+ + I +KGYK PTPIQRKT+PLI+ G DVV MARTGSGKTAAF
Sbjct: 102 KKAKAGSFASFGLTKFILTNIAKKGYKQPTPIQRKTIPLIMEGRDVVGMARTGSGKTAAF 161
Query: 78 LVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF 137
++P+++RL GGVRA+ILSP+R+LALQT K KE T+L+ +L+GGDS+E F
Sbjct: 162 VLPLIERLKSR-QLGGVRAVILSPSRELALQTYKQVKEFSHGTNLQSIVLIGGDSLEEDF 220
Query: 138 EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS 197
++ PDII+ TPGR +H E++ L +++Y+VFDEAD LF MGFAEQL+++L L
Sbjct: 221 SKMMTKPDIIVCTPGRFLHLKVEMQ-YDLMTIQYIVFDEADRLFEMGFAEQLNELLISLP 279
Query: 198 ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLY 257
NRQ+LLFSATLP +L +FAKAGL +P LVRLD ++KIS L++A+FT ++ E+ A LLY
Sbjct: 280 SNRQSLLFSATLPRSLVDFAKAGLTNPVLVRLDSESKISDQLQMAYFTTKKNEREANLLY 339
Query: 258 MIREHI 263
+++E I
Sbjct: 340 ILQEVI 345
Score = 202 bits (513), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 148/469 (31%), Positives = 230/469 (49%), Gaps = 66/469 (14%)
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ S T+IFV TKHHVE++ L R+ G S YG +DQ ARK + +FR T L+
Sbjct: 405 QLPSPHSTIIFVPTKHHVEYVTKLLRDAGYLVSYIYGTLDQHARKNQLYQFRIGLTNILV 464
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
VTDVAARGIDIP+L NVIN+ P KIF+HRVGR ARAG G A+S + +++ YLLDL
Sbjct: 465 VTDVAARGIDIPVLANVINFTLPASSKIFIHRVGRTARAGNKGWAYSIINEKELPYLLDL 524
Query: 382 HLFLSKPIRAAPSEEEVL--LDMDGVMSKIDQAIAN--GETIYGRFPQTVIDLVSDRVRE 437
LFL K I E L L + K I N + G P+ +++ +
Sbjct: 525 ELFLGKKILLTSMHEAKLEMLKKTSIKGKFIPPIVNYTERLVLGSIPRIDLEIFQELYEN 584
Query: 438 IIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDL---PREGLHPMFKNVLEGGE 494
++ ++ ++ L+ +LY +T+ S+ES++R K++ + H +F LE +
Sbjct: 585 LLRNNYEIKVLKDVAIKGEKLYHRTRQPASQESLKRSKEIIDNSWDDQHLLFGENLEKQK 644
Query: 495 LMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQ 554
F +L+ KQT+ E L+G + V+ M K+R L Q
Sbjct: 645 ---HEFLIKLQDRNFKQTVFE----------LKGNDEKLVEFMNKRRR------QLAPIQ 685
Query: 555 RSSKSMEKEVEPE---------ADSLMAKEIKETHG-------------SKRKAKTFKDE 592
R +K ++ + E D ++ + + +G K+K K+F+D
Sbjct: 686 RKAKERKELLAKERLAGLTHGIEDEILRADGENGYGVDEDELQKTFEDIDKKKKKSFRDP 745
Query: 593 EYFISSVPTNHHMEAGLSVRSDQGFGL-----NRLEAAVLDLVADDSGGLQKQKQVYHWD 647
++F+ NH+ A S+ DQ L N + A DL DD+ LQ KQ+ WD
Sbjct: 746 QFFL-----NHYAPA--SIIQDQQLSLNSSFANEAQQATFDLDNDDNNKLQTNKQIMKWD 798
Query: 648 KRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKK 695
K+ KYI S K + +E+G K+ A+ ++G + +WK++ + K
Sbjct: 799 KKKSKYINSK-----STDKKYIISENGTKIPASFRSGKFDEWKKQRNLK 842
>gi|255726598|ref|XP_002548225.1| hypothetical protein CTRG_02522 [Candida tropicalis MYA-3404]
gi|240134149|gb|EER33704.1| hypothetical protein CTRG_02522 [Candida tropicalis MYA-3404]
Length = 929
Score = 276 bits (706), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 134/246 (54%), Positives = 182/246 (73%), Gaps = 2/246 (0%)
Query: 18 KKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77
KK+K+G F S L+ + I +KGYK PTPIQRKT+PLI+ G DVV MARTGSGKTAAF
Sbjct: 106 KKAKAGSFASFGLTKFILTNIAKKGYKQPTPIQRKTIPLIMEGRDVVGMARTGSGKTAAF 165
Query: 78 LVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF 137
++P++++L GVRA+I+SP+R+LALQT K KE T+L+ +L+GGDS+E F
Sbjct: 166 VLPLIEQLKSR-QTNGVRAIIISPSRELALQTYKQVKEFSNGTNLKSIVLIGGDSLEEDF 224
Query: 138 EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS 197
++ PD+I+ TPGR +H E+E LK+V Y+VFDEAD LF MGFAEQL++++ L
Sbjct: 225 SKMMTKPDVIVCTPGRFLHLKVEME-YDLKTVRYIVFDEADRLFEMGFAEQLNELIASLP 283
Query: 198 ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLY 257
NRQ+LLFSATLP +L +FAKAGL P LVRLD ++KIS L++A+FT ++ E+ A LLY
Sbjct: 284 TNRQSLLFSATLPRSLVDFAKAGLSSPVLVRLDAESKISDQLQMAYFTTKKNEREANLLY 343
Query: 258 MIREHI 263
+++E I
Sbjct: 344 ILQEII 349
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 168/546 (30%), Positives = 262/546 (47%), Gaps = 85/546 (15%)
Query: 269 TLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAAR 328
T+IFV TKHHVE++ L R+ G S YG +DQ ARK + +FR T L+VTDVAAR
Sbjct: 409 TIIFVPTKHHVEYVTRLLRDAGYLVSYIYGTLDQHARKNQLYQFRVGLTNILVVTDVAAR 468
Query: 329 GIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKP 388
GIDIP+L NVIN+ P KIF+HRVGR ARAG G A+S V +++ YLLDL LFL K
Sbjct: 469 GIDIPVLANVINFTLPASSKIFIHRVGRTARAGNKGWAYSIVNEKELPYLLDLELFLGKK 528
Query: 389 IRAAPSEE---EVLLDMDGVMSKIDQAIANGE-TIYGRFPQTVIDLVSDRVREIIDSSAD 444
I E E+L G S I + E + G P+ ++ + ++ + +
Sbjct: 529 ILLTSMHEAKVEMLKKSQGESSFIPPVVNYTERLVLGSIPRLDLETFQELYENLLRNDYE 588
Query: 445 LNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGL---HPMFKNVLEGGELMALAFS 501
+ L+ RLY +T+ S+ES++R K++ H +F LE L F
Sbjct: 589 IKVLKDVAIKGERLYHRTRASASQESLKRSKEILENSWDDQHLLFGENLEK---QKLDFL 645
Query: 502 ERLKAFRPKQTILEAEG-EAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQR---SS 557
+L+ KQT+ E +G + + + + Q + +K + E L+ ++R +
Sbjct: 646 NKLQNRISKQTVFEFKGNDESLVEFMNKRRRQLAPIQRKAKERRE----LLQKERLAGLT 701
Query: 558 KSMEKEV-EPEADS---LMAKEIKET-HGSKRKAKTFKDEEYFISSVPTNHHMEAGLSVR 612
+E EV + +S + +E++ET + K+F+D +F+S H+ A SV
Sbjct: 702 HGIEDEVLHTQGESGYNVDEEELQETFEDADNGKKSFRDPNFFLS-----HYAPA--SVI 754
Query: 613 SDQGFGL-----NRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGK 667
DQ + N + A DL DD +QK KQ+ WDK+ KYI S K
Sbjct: 755 QDQQLAISSSFANEAQNATFDLENDDK--IQKNKQIMKWDKKKGKYINSK-----STDKK 807
Query: 668 VVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNAEETTSVPGGRHLGGNNRKF 726
+ +ESG ++ A+ ++G + +WK++ + K + +T V R+ G+N+ F
Sbjct: 808 YIISESGTRIPASFRSGKFDEWKKQRNIK-----------STKTAIVEDDRN--GSNKNF 854
Query: 727 RGGKNQQRSVPNAH-----------------------------VCSEIKDLDQVRKERQK 757
+ + + +P+ + V EIK +Q+RKER
Sbjct: 855 KHKQQKSPKLPDKYRDDYHKQKKKVEKAIESGVSVKGYHGKGNVHQEIKSTEQIRKERLL 914
Query: 758 KADRIA 763
K R A
Sbjct: 915 KEKRRA 920
>gi|18255213|gb|AAH21900.1| Ddx54 protein, partial [Mus musculus]
Length = 544
Score = 275 bits (702), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 181/534 (33%), Positives = 285/534 (53%), Gaps = 71/534 (13%)
Query: 268 QTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAA 327
QT++FV+TKHH E+L L +G+ + Y +DQ ARKI++++F K LIVTD+AA
Sbjct: 9 QTVVFVATKHHAEYLTELLMGQGVSCAHIYSALDQTARKINLAKFTHNKCSTLIVTDLAA 68
Query: 328 RGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSK 387
RG+DIPLLDNVIN+ FP K K+F+HRVGR ARAGR+GTA+S V +++ YLLDLHLFL +
Sbjct: 69 RGLDIPLLDNVINYSFPAKGKLFLHRVGRVARAGRSGTAYSLVAPDEVPYLLDLHLFLGR 128
Query: 388 PIR-AAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLN 446
+ A P EE + D G + + GR PQ+V+D ++ + +S DL
Sbjct: 129 SVTLARPCEEPSVADAVGR-----------DGVLGRVPQSVVDDEDSSLQTAMGASLDLQ 177
Query: 447 SLQRTCTNAFRLYSKTKPLPSKESIRRGK--DLPREGLHPMFKNVLEGGELMALAFSERL 504
L R NA + Y +++P PS ESI+R K DL GLHP+F + E GEL L + +
Sbjct: 178 GLHRVANNAQQQYVRSRPAPSPESIKRAKELDLAELGLHPLFSSCFEEGELQRLRLVDSI 237
Query: 505 KAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVHQQRSSKSMEKEV 564
K +R + TI E + + PSSQ +M+ KR K + Q+R +
Sbjct: 238 KNYRTRTTIFEINASS------KDPSSQ---MMRAKRQRDRKAVASFQQRRQERQ----- 283
Query: 565 EPEADSLMAKEIKE---------------------------THGSKRK--AKTFKDEEYF 595
E AD +E+ + + G+KR+ +D+E++
Sbjct: 284 EGPADPAPQRELPQEEEEEMVETVEGVFTEVVGQKRPRPGPSQGAKRRRMETRQRDQEFY 343
Query: 596 ISSVPTNHHMEAGLSVRSDQGFGLNRLEAAVLDLVADDSGGLQKQKQVYHWDKRGKKYIK 655
+ P + E GLSV G ++ AVLDL+ D++ + + +Q WD++ K+++
Sbjct: 344 VPYRPKDFDSERGLSVSGAGGAFEQQVAGAVLDLMGDEAQNMSRGQQQLKWDRKKKRFV- 402
Query: 656 LNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKERSHKKVYLKGASNEGNAEETTSVP 714
G+ K +KTESG + ++ K +Y+KWK++ +K+ + + EG + + P
Sbjct: 403 ---GQSGQEDKKKIKTESGRFISSSYKRDLYQKWKQK--QKIDDRDSEEEGPSNQRGPGP 457
Query: 715 GGRHLGGNNRKFRGGKNQQR--SVPNAHVCSEIKDLDQVRKERQKKADRIAFMK 766
G ++ G +Q R SVP + SE+K +Q+ K+R ++A + F++
Sbjct: 458 RRGGKRGRSQ----GTSQPRASSVPAGRMRSELKTKEQILKQR-RQAQKQRFLQ 506
>gi|329926082|ref|ZP_08280693.1| ATP-dependent RNA helicase RhlE [Paenibacillus sp. HGF5]
gi|328939480|gb|EGG35833.1| ATP-dependent RNA helicase RhlE [Paenibacillus sp. HGF5]
Length = 506
Score = 274 bits (701), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 147/404 (36%), Positives = 240/404 (59%), Gaps = 12/404 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE LN+SP + +A+ ++ YK PTPIQ + +P +L+G D++ A+TG+GKTAAF VPM+Q
Sbjct: 3 FEDLNISPVILKALAKENYKAPTPIQAQAIPAVLAGRDLLGCAQTGTGKTAAFSVPMIQL 62
Query: 85 LNQHVPQGG----VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
LNQ P+ G +RAL+LSPTR+LALQ K ++T LR + +VGG S ++Q L
Sbjct: 63 LNQQPPKPGMGRRIRALVLSPTRELALQISDNVKAYSQFTKLRSTAIVGGVSQKTQERAL 122
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
Q DI+IATPGRL+ +++ + + L+ VE +V DEAD + MGF + +I+ ++ +
Sbjct: 123 QQGADILIATPGRLLDLMNQ-KHVDLQHVEILVLDEADRMLDMGFIHDVKRIIAKMPSKK 181
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTL FSAT+P+ + + + L +P V + + + ++ + + L K L +++
Sbjct: 182 QTLFFSATMPAEITQLVQTLLHNPVKVEITPVSSTAERIEQSVYLLETGNKQQQLNELMK 241
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
+ SS L+F TK + + + + +GD Q +R+ ++ F++ T L
Sbjct: 242 D--SSIVSALVFTRTKRGADRVARGLNKVNITAQAIHGDKSQTSRQTALNNFKSGATRVL 299
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLD 380
+ TD+AARGIDI L +VIN++ P P+ +VHR+GR RAG +GTA SF +++ +L D
Sbjct: 300 VATDIAARGIDIDELSHVINFNLPNIPETYVHRIGRTGRAGLSGTAISFCEVDEVPFLRD 359
Query: 381 LHLFLSKPIRAAPSEEEVLLDMDGVM--SKIDQAIANGETIYGR 422
+ + K I P ++ M G + +K+D A +G + G+
Sbjct: 360 IEKLIGKSI---PEVKDHAFPMSGALRATKVDPAPKSGSSKPGK 400
>gi|281204092|gb|EFA78288.1| putative RNA helicase [Polysphondylium pallidum PN500]
Length = 443
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 153/378 (40%), Positives = 225/378 (59%), Gaps = 8/378 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE L + P + A K+ G+K PT IQRK +P L+G D+V +A+TGSGKTAAF +PMLQ
Sbjct: 15 FEKLGVDPQIVEACKKLGFKNPTEIQRKAIPEALAGKDIVGLAQTGSGKTAAFSIPMLQA 74
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L G+ L+L+PTR+LA+Q + LG ++ ++LVGG SQ LA+ P
Sbjct: 75 L--LAKPSGLFGLVLAPTRELAVQISDQIEALGAVIGVKCAVLVGGIDTMSQSMALAKKP 132
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
II+ TPGR+++HL + +LK+++Y V DEAD L GM F E+++ IL + ++R T L
Sbjct: 133 HIIVGTPGRVVYHLENTKGFNLKTLKYFVMDEADRLLGMDFEEEINTILKVIPKDRNTFL 192
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISP--DLKLAFFTLRQEEKHAALLYMIREH 262
FSAT+ S +A+ +A L DP V++ V TK S L+ + + + K L Y++ E
Sbjct: 193 FSATMTSKVAKLQRASLNDP--VKIQVATKYSTVDTLQQEYIFIPYKHKECYLTYILNEL 250
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
+ +IF ST L ++ R + G MDQ R +++F+A+ L+
Sbjct: 251 --AGNSVIIFTSTCAASTKLAIMLRNLSFKAIPINGQMDQSKRLSSLNKFKAQTMDILVA 308
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
TDVAARG+DIP +D VIN+D P K ++HRVGR ARAGRTG A + VT D+ L +
Sbjct: 309 TDVAARGLDIPSVDLVINYDVPVSSKEYMHRVGRTARAGRTGRAVTLVTQYDVEIYLRIE 368
Query: 383 LFLSKPIRAAPSEEEVLL 400
L + + P+E+E +L
Sbjct: 369 HALEQKLEEFPTEQESVL 386
>gi|330794252|ref|XP_003285194.1| hypothetical protein DICPUDRAFT_7134 [Dictyostelium purpureum]
gi|325084915|gb|EGC38333.1| hypothetical protein DICPUDRAFT_7134 [Dictyostelium purpureum]
Length = 434
Score = 273 bits (697), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 153/405 (37%), Positives = 236/405 (58%), Gaps = 17/405 (4%)
Query: 14 EKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGK 73
E+++KK + FESL + P + A R G+K P IQR+T+P L G D++ +A+TGSGK
Sbjct: 1 EEEEKKYEHVTFESLGVHPQIIDACYRSGFKKPKEIQRETIPWALKGRDIIGLAQTGSGK 60
Query: 74 TAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSM 133
T AF++P+LQ+L + PQG + L ++PTR+LA Q + LG ++ +LVGG
Sbjct: 61 TGAFVIPVLQKLLEQ-PQG-IFCLCIAPTRELAFQIAEQFNALGATIGVKTCVLVGGIDS 118
Query: 134 ESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKIL 193
+Q +LA+ P III +PGR++ HL + +L+S++Y + DEAD LFG F E+++ IL
Sbjct: 119 MTQSLQLAKKPHIIIGSPGRIIFHLENTKGFNLRSIKYFIMDEADRLFGADFEEEVNNIL 178
Query: 194 GQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRL-----DVDTKISPDLKLAFFTLRQ 248
+ + R T LFSAT+ S +A+ +A L +P +++ VDT I L + F
Sbjct: 179 KVIPKERNTFLFSATMTSKVAKLQRASLVNPVKIQVATKYQTVDTLIQQYLFIPF----- 233
Query: 249 EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIH 308
+ K L+Y++ E + T+IF ST + ++ R GL GDMDQ R
Sbjct: 234 KYKECYLVYILNEL--AGNLTIIFTSTCASSNKVTLMLRNLGLAAIPINGDMDQAKRLAS 291
Query: 309 VSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFS 368
+S+F+ L+ TDVAARG+DIP++D VIN+D P K ++HRVGR ARAG +G A +
Sbjct: 292 LSKFKQGTKSILVATDVAARGLDIPMVDLVINYDVPTNSKEYIHRVGRTARAGNSGRAIT 351
Query: 369 FVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAI 413
VT D+ + L K + P +E+ +L + ++ QA+
Sbjct: 352 LVTQYDVEMYQRIEFVLKKKLDEFPCQEDTVLIF---LERVTQAV 393
>gi|340959217|gb|EGS20398.1| hypothetical protein CTHT_0022270 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 806
Score = 271 bits (694), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 147/367 (40%), Positives = 220/367 (59%), Gaps = 10/367 (2%)
Query: 14 EKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGK 73
E + K ++ F+S+NLS + R + G+ PTPIQ +T+P+ L G DVV A TGSGK
Sbjct: 274 ETETKNGQASTFQSMNLSRPILRGLTSVGFTKPTPIQAQTIPIALMGKDVVGGAVTGSGK 333
Query: 74 TAAFLVPMLQRL---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGG 130
TAAF+VP+L+RL + VP R +IL+PTR+LA+Q +L YTD++ L VGG
Sbjct: 334 TAAFVVPILERLLYRPKKVPT--TRVVILTPTRELAIQCHAVATKLAAYTDIKFCLAVGG 391
Query: 131 DSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLH 190
S++ Q EL PD++IATPGR + H+ ++ ++E +V DEAD + GFA++L+
Sbjct: 392 LSLKVQEAELRLRPDVVIATPGRFIDHMRNSASFAVDTIEILVLDEADRMLEDGFADELN 451
Query: 191 KILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTL---R 247
+IL L ++RQT+LFSAT+ S++ + + GL P + +D K + L F L R
Sbjct: 452 EILKTLPKSRQTMLFSATMTSSVDKLIRVGLNKPARIMVDSQKKTAGTLTQEFVRLRPGR 511
Query: 248 QEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKI 307
+ ++ LLY+ + + ++ +IF K ++F GL + +G M+Q R
Sbjct: 512 EGKRMGYLLYICKNLYT--ERVIIFFRQKKVAHEARIIFGLHGLSCAELHGSMNQTQRIA 569
Query: 308 HVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAF 367
V FR K FL+ TDVA+RG+DI +D VIN++ P +I+VHRVGR ARAGR+GTA
Sbjct: 570 SVEAFRDGKVNFLLATDVASRGLDIKGVDTVINYEAPQTHEIYVHRVGRTARAGRSGTAI 629
Query: 368 SFVTSED 374
+ D
Sbjct: 630 TLAAEPD 636
>gi|261404961|ref|YP_003241202.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus sp.
Y412MC10]
gi|261281424|gb|ACX63395.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. Y412MC10]
Length = 506
Score = 271 bits (693), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 145/404 (35%), Positives = 239/404 (59%), Gaps = 12/404 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE+LN+SP + +A+ ++ YK PTPIQ + +P +L+G D++ A+TG+GKTAAF VPM+Q
Sbjct: 3 FENLNISPVILKALAKENYKAPTPIQAQAIPAVLAGRDLLGCAQTGTGKTAAFSVPMIQL 62
Query: 85 LNQHVPQGG----VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
LNQ P+ G +RAL+LSPTR+LALQ K ++T LR + +VGG S ++Q L
Sbjct: 63 LNQQPPKPGMGRRIRALVLSPTRELALQISDNVKAYSQFTKLRSTAIVGGVSQKTQERAL 122
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
Q DI+IATPGRL+ +++ + + L+ VE +V DEAD + MGF + +I+ ++ +
Sbjct: 123 QQGADILIATPGRLLDLMNQ-KHVDLQHVEILVLDEADRMLDMGFIHDVKRIIAKMPSKK 181
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTL FSAT+P+ + + + L +P V + + + ++ + + L K L +++
Sbjct: 182 QTLFFSATMPAEITQLVQTLLHNPVKVEITPVSSTAERIEQSVYLLETGNKQQQLNELMK 241
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
+ S L+F TK + + + + +GD Q +R+ ++ F++ T L
Sbjct: 242 D--PSIVSALVFTRTKRGADRVARGLNKVNITAQAIHGDKSQTSRQTALNNFKSGATRVL 299
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLD 380
+ TD+AARGIDI L +VIN++ P P+ +VHR+GR RAG +GTA SF +++ +L D
Sbjct: 300 VATDIAARGIDIDELSHVINFNLPNIPETYVHRIGRTGRAGLSGTAISFCEVDEVPFLRD 359
Query: 381 LHLFLSKPIRAAPSEEEVLLDMDGVM--SKIDQAIANGETIYGR 422
+ + K I P ++ M G + +K+D +G + G+
Sbjct: 360 IEKLIGKSI---PEVKDHAFPMSGALRAAKVDPTPKSGSSKPGK 400
>gi|70991044|ref|XP_750371.1| ATP-dependent RNA helicase [Aspergillus fumigatus Af293]
gi|74669652|sp|Q4WJE9.1|RRP3_ASPFU RecName: Full=ATP-dependent rRNA helicase rrp3
gi|66848003|gb|EAL88333.1| ATP-dependent RNA helicase , putative [Aspergillus fumigatus Af293]
Length = 472
Score = 269 bits (687), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 158/393 (40%), Positives = 230/393 (58%), Gaps = 10/393 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L + + A + GYK PTPIQ +++PL L G D++ +A TGSGKTAAF +P+LQ
Sbjct: 54 FKDLGIIDQLCEACETMGYKAPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQA 113
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L ++ PQ LIL+PTR+LA Q K + LG ++R +++VGG M SQ L + P
Sbjct: 114 LMEN-PQS-FFGLILAPTRELAFQISKSFESLGSTINVRCAVIVGGMDMVSQSIALGKKP 171
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
II+ATPGRL+ HL + SL++++Y+V DEAD L M F L KIL L R+T L
Sbjct: 172 HIIVATPGRLLDHLENTKGFSLRTLKYLVMDEADRLLDMDFGPLLDKILKVLPRERRTFL 231
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDT---KISPDLKLAFFTLRQEEKHAALLYMIRE 261
FSAT+ S + +A L +P +R+ V + + L ++ L + K L+Y++ E
Sbjct: 232 FSATMSSKVESLQRASLSNP--LRVSVSSNKYQTVSTLLQSYLFLPHKHKDIYLVYLLNE 289
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ Q T+IF T H + ++ L R G +G + Q AR + +FR+R L+
Sbjct: 290 FVG--QSTIIFTRTVHETQRISFLLRSLGFGAIPLHGQLSQSARLGALGKFRSRSRDILV 347
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TDVAARG+DIP +D V+N+D P K +VHRVGR ARAG++G A SFVT D+ L +
Sbjct: 348 ATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQYDVEIWLRI 407
Query: 382 HLFLSKPIRAAPSE-EEVLLDMDGVMSKIDQAI 413
L K ++ E +EV++ + V QAI
Sbjct: 408 EGALGKKLKEYELEKDEVMVLAERVGEAQRQAI 440
>gi|85860692|ref|YP_462894.1| ATP-dependent RNA helicase [Syntrophus aciditrophicus SB]
gi|85723783|gb|ABC78726.1| ATP-dependent RNA helicase [Syntrophus aciditrophicus SB]
Length = 423
Score = 269 bits (687), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 151/366 (41%), Positives = 220/366 (60%), Gaps = 7/366 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F NL P + I+ GYK PTPIQ +++P I+ G DV+ +A+TG+GKTAAF +P+LQR
Sbjct: 3 FTQFNLHPQINAGIEALGYKTPTPIQMQSIPAIIQGRDVMGLAQTGTGKTAAFALPILQR 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L + P VRALI++PTR+LA Q + E+ R T L+ L GG S Q E+L Q
Sbjct: 63 L-MNGPGKMVRALIVAPTRELAEQINESINEMSRSTKLKSVALYGGVSKNPQIEKLRQGA 121
Query: 145 DIIIATPGRLMHHLSE-VEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
+II+A PGRL+ +++ V D+S +E V DEAD +F MGF ++ KI QL E RQTL
Sbjct: 122 EIIVACPGRLLDLVAQGVADLS--GIEVFVLDEADRMFDMGFLPEIRKITKQLPEKRQTL 179
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
LFSAT+P+ + AK L DP +R+ D +S + + + Q K A L+ +++E
Sbjct: 180 LFSATMPADIRSLAKDILHDPLTIRIGNDIPVS-TVSHTLYPVEQHLKTALLIKLLKE-- 236
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+ + L+F TKH + + ++ G S GD+ Q+ R+ ++ FR K LI T
Sbjct: 237 TDTESVLVFARTKHRTTRVAMQMKKAGFPVSSLQGDLSQNQRQTALNGFREGKYRILIAT 296
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHL 383
D+AARGID+ + +VIN+D P + + HR+GR RA ++G AFSFVTSE+ + +
Sbjct: 297 DIAARGIDVTRISHVINYDMPDTVEAYTHRIGRTGRATKSGDAFSFVTSEERDLVDSIEY 356
Query: 384 FLSKPI 389
L K I
Sbjct: 357 VLGKQI 362
>gi|303249337|ref|ZP_07335567.1| DEAD/DEAH box helicase domain protein [Desulfovibrio fructosovorans
JJ]
gi|302489269|gb|EFL49229.1| DEAD/DEAH box helicase domain protein [Desulfovibrio fructosovorans
JJ]
Length = 498
Score = 268 bits (686), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 144/368 (39%), Positives = 222/368 (60%), Gaps = 9/368 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+S L P + I R GY+ PTPIQ + +P + G D++ +A+TG+GKTAAFL+P++ R
Sbjct: 23 FDSFCLHPTICANIARIGYETPTPIQAEAIPHVADGRDIMGLAQTGTGKTAAFLLPIIHR 82
Query: 85 LNQHVPQG-GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L P+ GVRALIL+PTR+LA Q + +LGR T LR +++ GG M Q L Q
Sbjct: 83 LMTTKPEKRGVRALILAPTRELAEQIYRAGVDLGRGTRLRAAVIYGGVGMFPQVRALRQG 142
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
DI++A PGRL+ H+++ ++ ++E +V DEAD +F MGF L +IL + E RQTL
Sbjct: 143 LDIVVACPGRLLDHMNQ-GNVRFDALETLVLDEADHMFDMGFLPDLRRILAAVPEKRQTL 201
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISP--DLKLAFFTLRQEEKHAALLYMIRE 261
LFSAT+P+A+A A L DP VR+ ++P ++ A + + +K LL+++ E
Sbjct: 202 LFSATMPAAIAGLAGETLTDPVTVRIG---HLAPAATVEHAIYPVSSAQKTPLLLHLLGE 258
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
++ + ++F TKH + L G + + G++ Q R+I + FR L+
Sbjct: 259 --AAKESVIVFTRTKHRAKNLAQQLCRAGHKATCLQGNLSQRQRQIAMDGFRRGTFQVLV 316
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TD+AARGID+ + +V+N+D P P+ + HR+GR RA R G A +FVT EDM+ + +
Sbjct: 317 ATDIAARGIDVSQVAHVVNYDIPDTPEAYTHRIGRTGRAERDGQAHTFVTGEDMSMVRAI 376
Query: 382 HLFLSKPI 389
+ KP+
Sbjct: 377 ERHMKKPL 384
>gi|336469774|gb|EGO57936.1| hypothetical protein NEUTE1DRAFT_81992 [Neurospora tetrasperma FGSC
2508]
Length = 830
Score = 268 bits (686), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 149/363 (41%), Positives = 218/363 (60%), Gaps = 8/363 (2%)
Query: 17 KKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAA 76
KKK + F+ ++LS + R + G+ PTPIQ KT+P+ L G DVV A TGSGKTAA
Sbjct: 288 KKKGEMASFQEMSLSRPILRGLTSVGFTKPTPIQAKTIPISLMGKDVVGGAVTGSGKTAA 347
Query: 77 FLVPMLQRL---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSM 133
F+VP+L+RL + VP R +IL+PTR+LA+Q +L +TD++ L VGG S+
Sbjct: 348 FVVPILERLLYRPKKVPT--TRVVILTPTRELAIQCHAVAVKLASHTDIKFCLAVGGLSL 405
Query: 134 ESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKIL 193
+ Q EL PD++IATPGR + H+ ++ ++E +V DEAD + GFA++L++IL
Sbjct: 406 KVQEAELRLRPDVVIATPGRFIDHMRNSASFAVDTIEILVLDEADRMLEDGFADELNEIL 465
Query: 194 GQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR--QEEK 251
L ++RQT+LFSAT+ S++ +AGL P + D K + L F LR +E K
Sbjct: 466 TTLPKSRQTMLFSATMTSSVDRLIRAGLNKPVRIMADSQKKTAGTLVQEFVRLRPGRESK 525
Query: 252 HAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSR 311
L I + I + ++ +IF K + ++F GL + +G M+Q R V
Sbjct: 526 REGYLLHICKTIYT-ERVIIFFRQKKIAHKMRIIFGLFGLSCAELHGSMNQAQRIQSVED 584
Query: 312 FRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVT 371
FR K FL+ TD+A+RG+DI +D VIN++ P P+I+VHRVGR ARAGR+GTA +
Sbjct: 585 FRDGKVNFLLATDLASRGLDIKGVDTVINYEAPQTPEIYVHRVGRTARAGRSGTAITLAA 644
Query: 372 SED 374
D
Sbjct: 645 EPD 647
>gi|142982611|sp|P0C2N8.1|DRS1_NEUCR RecName: Full=ATP-dependent RNA helicase drs-1
Length = 829
Score = 268 bits (685), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 149/363 (41%), Positives = 218/363 (60%), Gaps = 8/363 (2%)
Query: 17 KKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAA 76
KKK + F+ ++LS + R + G+ PTPIQ KT+P+ L G DVV A TGSGKTAA
Sbjct: 287 KKKGEMSSFQEMSLSRPILRGLTSVGFTKPTPIQAKTIPISLMGKDVVGGAVTGSGKTAA 346
Query: 77 FLVPMLQRL---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSM 133
F+VP+L+RL + VP R +IL+PTR+LA+Q +L +TD++ L VGG S+
Sbjct: 347 FVVPILERLLYRPKKVPT--TRVVILTPTRELAIQCHAVAVKLASHTDIKFCLAVGGLSL 404
Query: 134 ESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKIL 193
+ Q EL PD++IATPGR + H+ ++ ++E +V DEAD + GFA++L++IL
Sbjct: 405 KVQEAELRLRPDVVIATPGRFIDHMRNSASFAVDTIEILVLDEADRMLEDGFADELNEIL 464
Query: 194 GQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR--QEEK 251
L ++RQT+LFSAT+ S++ +AGL P + D K + L F LR +E K
Sbjct: 465 TTLPKSRQTMLFSATMTSSVDRLIRAGLNKPVRIMADSQKKTAGTLVQEFVRLRPGRESK 524
Query: 252 HAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSR 311
L I + I + ++ +IF K + ++F GL + +G M+Q R V
Sbjct: 525 REGYLLHICKTIYT-ERVIIFFRQKKIAHKMRIIFGLFGLSCAELHGSMNQAQRIQSVED 583
Query: 312 FRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVT 371
FR K FL+ TD+A+RG+DI +D VIN++ P P+I+VHRVGR ARAGR+GTA +
Sbjct: 584 FRDGKVNFLLATDLASRGLDIKGVDTVINYEAPQTPEIYVHRVGRTARAGRSGTAITLAA 643
Query: 372 SED 374
D
Sbjct: 644 EPD 646
>gi|350290558|gb|EGZ71772.1| DEAD-domain-containing protein [Neurospora tetrasperma FGSC 2509]
Length = 865
Score = 268 bits (685), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 149/363 (41%), Positives = 218/363 (60%), Gaps = 8/363 (2%)
Query: 17 KKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAA 76
KKK + F+ ++LS + R + G+ PTPIQ KT+P+ L G DVV A TGSGKTAA
Sbjct: 288 KKKGEMASFQEMSLSRPILRGLTSVGFTKPTPIQAKTIPISLMGKDVVGGAVTGSGKTAA 347
Query: 77 FLVPMLQRL---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSM 133
F+VP+L+RL + VP R +IL+PTR+LA+Q +L +TD++ L VGG S+
Sbjct: 348 FVVPILERLLYRPKKVPT--TRVVILTPTRELAIQCHAVAVKLASHTDIKFCLAVGGLSL 405
Query: 134 ESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKIL 193
+ Q EL PD++IATPGR + H+ ++ ++E +V DEAD + GFA++L++IL
Sbjct: 406 KVQEAELRLRPDVVIATPGRFIDHMRNSASFAVDTIEILVLDEADRMLEDGFADELNEIL 465
Query: 194 GQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR--QEEK 251
L ++RQT+LFSAT+ S++ +AGL P + D K + L F LR +E K
Sbjct: 466 TTLPKSRQTMLFSATMTSSVDRLIRAGLNKPVRIMADSQKKTAGTLVQEFVRLRPGRESK 525
Query: 252 HAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSR 311
L I + I + ++ +IF K + ++F GL + +G M+Q R V
Sbjct: 526 REGYLLHICKTIYT-ERVIIFFRQKKIAHKMRIIFGLFGLSCAELHGSMNQAQRIQSVED 584
Query: 312 FRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVT 371
FR K FL+ TD+A+RG+DI +D VIN++ P P+I+VHRVGR ARAGR+GTA +
Sbjct: 585 FRDGKVNFLLATDLASRGLDIKGVDTVINYEAPQTPEIYVHRVGRTARAGRSGTAITLAA 644
Query: 372 SED 374
D
Sbjct: 645 EPD 647
>gi|159130845|gb|EDP55958.1| ATP-dependent RNA helicase , putative [Aspergillus fumigatus A1163]
Length = 472
Score = 268 bits (685), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 158/393 (40%), Positives = 229/393 (58%), Gaps = 10/393 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L + + A + GYK PTPIQ +++PL L G D++ +A TGSGKTAAF +P+LQ
Sbjct: 54 FKDLGIIDQLCEACETMGYKAPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQA 113
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L + PQ LIL+PTR+LA Q K + LG ++R +++VGG M SQ L + P
Sbjct: 114 LMEK-PQS-FFGLILAPTRELAFQISKSFESLGSTINVRCAVIVGGMDMVSQSIALGKKP 171
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
II+ATPGRL+ HL + SL++++Y+V DEAD L M F L KIL L R+T L
Sbjct: 172 HIIVATPGRLLDHLENTKGFSLRTLKYLVMDEADRLLDMDFGPLLDKILKVLPRERRTFL 231
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDT---KISPDLKLAFFTLRQEEKHAALLYMIRE 261
FSAT+ S + +A L +P +R+ V + + L ++ L + K L+Y++ E
Sbjct: 232 FSATMSSKVESLQRASLSNP--LRVSVSSNKYQTVSTLLQSYLFLPHKHKDIYLVYLLNE 289
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ Q T+IF T H + ++ L R G +G + Q AR + +FR+R L+
Sbjct: 290 FVG--QSTIIFTRTVHETQRISFLLRSLGFGAIPLHGQLSQSARLGALGKFRSRSRDILV 347
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TDVAARG+DIP +D V+N+D P K +VHRVGR ARAG++G A SFVT D+ L +
Sbjct: 348 ATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQYDVEIWLRI 407
Query: 382 HLFLSKPIRAAPSE-EEVLLDMDGVMSKIDQAI 413
L K ++ E +EV++ + V QAI
Sbjct: 408 EGALGKKLKEYELEKDEVMVLAERVGEAQRQAI 440
>gi|354584019|ref|ZP_09002916.1| DEAD/DEAH box helicase domain protein [Paenibacillus lactis 154]
gi|353197281|gb|EHB62774.1| DEAD/DEAH box helicase domain protein [Paenibacillus lactis 154]
Length = 490
Score = 268 bits (685), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 146/404 (36%), Positives = 238/404 (58%), Gaps = 12/404 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ LN+SP + +A+ ++ YK PTPIQ + +P +L+G D++ A+TG+GKTAAF VPM+Q
Sbjct: 3 FQDLNISPIILKALAKENYKTPTPIQAQAIPAVLAGRDLLGCAQTGTGKTAAFSVPMIQL 62
Query: 85 LNQHVPQGG----VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
LN+ P+ G +RAL+LSPTR+LALQ K ++T LR + +VGG S ++Q L
Sbjct: 63 LNEQPPKPGMGRRIRALVLSPTRELALQISDNVKAYSQFTKLRSTAIVGGVSQKTQERAL 122
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
Q DI+IATPGRL+ +++ + + L+ VE +V DEAD + MGF + +I+ ++ +
Sbjct: 123 QQGADILIATPGRLIDLINQ-KHVDLQHVEILVLDEADRMLDMGFIHDVKRIIAKMPSKK 181
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTL FSAT+PS + + K L +P V + + + + + + L K L +++
Sbjct: 182 QTLFFSATMPSEITQLVKTLLHNPVKVEITPVSSTAERIVQSVYLLETGSKQKQLNELLK 241
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
+ S L+F TK + + + + +GD Q +R+ ++ F++ +T L
Sbjct: 242 D--PSIASALVFTRTKRGADRVARGLNKVNITAQAIHGDKSQTSRQNALNNFKSGETRVL 299
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLD 380
+ TD+AARGIDI L +VIN++ P P+ +VHR+GR RAG +GTA SF +++ L D
Sbjct: 300 VATDIAARGIDIDELSHVINFNLPNIPETYVHRIGRTGRAGLSGTAISFCEVDEVPLLRD 359
Query: 381 LHLFLSKPIRAAPSEEEVLLDMDGVM--SKIDQAIANGETIYGR 422
+ + K I P ++ M G + +K+DQ+ +G G+
Sbjct: 360 IEKLIGKSI---PEVKDHAYPMSGSLRAAKVDQSPKSGSAKPGQ 400
>gi|319902651|ref|YP_004162379.1| DEAD/DEAH box helicase domain protein [Bacteroides helcogenes P
36-108]
gi|319417682|gb|ADV44793.1| DEAD/DEAH box helicase domain protein [Bacteroides helcogenes P
36-108]
Length = 422
Score = 268 bits (685), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 135/365 (36%), Positives = 226/365 (61%), Gaps = 3/365 (0%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE+L L + +A++ +GY PTPIQ K++P++L G D++ A+TG+GKTAAF +P+LQ+
Sbjct: 3 FENLKLIEPILKALQEEGYSTPTPIQEKSIPILLQGKDLLGCAQTGTGKTAAFSIPILQK 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L + + G++ALIL+PTR+LA+Q + + G+YT L+ +++ GG + Q ++L +
Sbjct: 63 LYKTDNRKGIKALILTPTRELAIQIGESFEAYGKYTGLKHTVIFGGVGQKPQTDDLKRGT 122
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
I+IATPGRL L ++LK++++ V DEAD + MGF + +IL L RQTL
Sbjct: 123 QILIATPGRL-QDLVNQGFINLKTLDFFVLDEADRMLDMGFIHDIRRILKMLPTQRQTLF 181
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+PS + A + L +P V + + + + + + ++EK L+++++ +
Sbjct: 182 FSATMPSEIETLANSMLSNPAKVEVTPVSSTVDTISQSVYFVEKKEKKDLLIHLLKN--T 239
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
+ + L+F TK+ + L + + G+ +G+ Q+AR+ ++ F++ LI TD
Sbjct: 240 AIESVLVFTRTKYGADKLARILSKSGISAEAIHGNKSQNARQRALTGFKSHTIRVLIATD 299
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
+AARGID+ L +VIN++ P P+ +VHR+GR RAG GTA SF SE++ YL D+
Sbjct: 300 IAARGIDVEQLSHVINYELPNVPETYVHRIGRTGRAGHEGTALSFCESEELPYLKDIQKL 359
Query: 385 LSKPI 389
+ K I
Sbjct: 360 IGKTI 364
>gi|164428960|ref|XP_001728501.1| hypothetical protein NCU11175 [Neurospora crassa OR74A]
gi|157072353|gb|EDO65410.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 857
Score = 268 bits (685), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 149/363 (41%), Positives = 218/363 (60%), Gaps = 8/363 (2%)
Query: 17 KKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAA 76
KKK + F+ ++LS + R + G+ PTPIQ KT+P+ L G DVV A TGSGKTAA
Sbjct: 287 KKKGEMSSFQEMSLSRPILRGLTSVGFTKPTPIQAKTIPISLMGKDVVGGAVTGSGKTAA 346
Query: 77 FLVPMLQRL---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSM 133
F+VP+L+RL + VP R +IL+PTR+LA+Q +L +TD++ L VGG S+
Sbjct: 347 FVVPILERLLYRPKKVPT--TRVVILTPTRELAIQCHAVAVKLASHTDIKFCLAVGGLSL 404
Query: 134 ESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKIL 193
+ Q EL PD++IATPGR + H+ ++ ++E +V DEAD + GFA++L++IL
Sbjct: 405 KVQEAELRLRPDVVIATPGRFIDHMRNSASFAVDTIEILVLDEADRMLEDGFADELNEIL 464
Query: 194 GQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR--QEEK 251
L ++RQT+LFSAT+ S++ +AGL P + D K + L F LR +E K
Sbjct: 465 TTLPKSRQTMLFSATMTSSVDRLIRAGLNKPVRIMADSQKKTAGTLVQEFVRLRPGRESK 524
Query: 252 HAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSR 311
L I + I + ++ +IF K + ++F GL + +G M+Q R V
Sbjct: 525 REGYLLHICKTIYT-ERVIIFFRQKKIAHKMRIIFGLFGLSCAELHGSMNQAQRIQSVED 583
Query: 312 FRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVT 371
FR K FL+ TD+A+RG+DI +D VIN++ P P+I+VHRVGR ARAGR+GTA +
Sbjct: 584 FRDGKVNFLLATDLASRGLDIKGVDTVINYEAPQTPEIYVHRVGRTARAGRSGTAITLAA 643
Query: 372 SED 374
D
Sbjct: 644 EPD 646
>gi|68068977|ref|XP_676399.1| RNA helicase [Plasmodium berghei strain ANKA]
gi|56496077|emb|CAH98101.1| RNA helicase , putative [Plasmodium berghei]
Length = 983
Score = 268 bits (684), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 159/483 (32%), Positives = 271/483 (56%), Gaps = 31/483 (6%)
Query: 10 LKRREKQKKKSKSGGFESLNLSPNVFRAIKRK-GYKVPTPIQRKTMPLILSGADVVAMAR 68
L + K+K K F++L LS + ++I Y PT IQ+ +P IL+ DV+ ++
Sbjct: 6 LYKNRKKKGKVVLSCFQNLGLSKQMCKSISTNLKYNRPTNIQKLCIPKILNKKDVICISE 65
Query: 69 TGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG-RYTDLRISLL 127
TGSGK+ +L ++ L H G+R LI+ PT++L +Q K K++ Y +L+I+++
Sbjct: 66 TGSGKSLVYLSTLIDMLKDHNKFFGIRGLIILPTKELVIQIYKLAKKICTNYFNLKINII 125
Query: 128 VGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGF-- 185
+GG S+ QFE L +N DI+I TPGR + L E + +SL+ VE ++ DEAD L + +
Sbjct: 126 IGGISLCKQFEILKENIDILICTPGRFSYILDETK-LSLEKVEMIIIDEADRLLELNYYN 184
Query: 186 -AEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFF 244
++K +G + N+QT+L SATLP+ + + K L +P +V ++ D IS + L F
Sbjct: 185 DMNNIYKCIGNKNLNKQTILVSATLPTNVENYFKLKLNNPEIVFVNSDNNISSQINLHFL 244
Query: 245 TLRQEEKHAALLYMIREHISSDQQ----TLIFVSTKHHVEFLNVLFREEGLEPSVCYGDM 300
R EK+A L+ +I + QQ T+IF TK+H+ F + + + S+ YG+
Sbjct: 245 FCRSYEKYAILIKLI---LLFKQQKLGKTIIFFCTKYHILFFSKILNFLKINHSILYGNS 301
Query: 301 DQDARKIHVSRFRARKTM-FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAAR 359
D R ++ F + + FL+VTD+A+RGI IP + NVIN++ P PKIF+HR+GRA R
Sbjct: 302 DTSFRFNQINNFTKHEDIQFLLVTDLASRGIHIPSVQNVINYNLPFSPKIFLHRIGRACR 361
Query: 360 A-GRTGTAFSFVTSEDMAYLLDLHLFLSKPIR--------AAPS-EEEVLLDMDGVMSKI 409
++G S VT +D+ Y ++ F+ K ++ + P E+ + + + +
Sbjct: 362 TECQSGYGISIVTYQDILYAYEICFFIGKKLKFIKKSTTNSIPHLEQNTNILKEEIETSK 421
Query: 410 DQAIANGE--TIYGRFPQTVIDLVS--DRVREIIDSSADLNSLQRTCTNAFRLYSKTKPL 465
++ I NG+ ++Y Q + + + D V++I ++L SL ++ +++LY +P
Sbjct: 422 NEIINNGKENSVYLGAIQNISEYLELIDHVKKI---DSELISLNKSIDMSYKLYYSMRPK 478
Query: 466 PSK 468
SK
Sbjct: 479 VSK 481
>gi|67527984|ref|XP_661837.1| hypothetical protein AN4233.2 [Aspergillus nidulans FGSC A4]
gi|74681080|sp|Q5B5E7.1|RRP3_EMENI RecName: Full=ATP-dependent rRNA helicase rrp3
gi|40740142|gb|EAA59332.1| hypothetical protein AN4233.2 [Aspergillus nidulans FGSC A4]
gi|259481158|tpe|CBF74430.1| TPA: ATP-dependent rRNA helicase rrp3 (EC 3.6.1.-)
[Source:UniProtKB/Swiss-Prot;Acc:Q5B5E7] [Aspergillus
nidulans FGSC A4]
Length = 465
Score = 268 bits (684), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 152/385 (39%), Positives = 225/385 (58%), Gaps = 10/385 (2%)
Query: 5 SSKAELKRREKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVV 64
S+K E + ++ +KS F+ L + + A + GYK PTPIQ + +PL L G DV+
Sbjct: 30 SAKDETQTSGEEPAPAKS--FKELGIIDQLCEACENMGYKAPTPIQSQAIPLALEGRDVI 87
Query: 65 AMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRI 124
+A TGSGKTAAF +PMLQ L + PQ + L+L+PTR+LA Q + + LG +R
Sbjct: 88 GLAETGSGKTAAFALPMLQALME-APQT-LFGLVLAPTRELAYQISQAFETLGSTIGVRC 145
Query: 125 SLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG 184
+++VGG M +Q L + P II+ATPGRL+ HL + SL++++Y+ DEAD L M
Sbjct: 146 AVIVGGMDMVAQSIALGKKPHIIVATPGRLLDHLENTKGFSLRNLKYLAIDEADRLLDMD 205
Query: 185 FAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKIS--PDLKLA 242
F E L KI+ L R T LFSAT+ + + +A L +P VR+ V +K L+ +
Sbjct: 206 FGESLDKIIRILPRTRHTYLFSATMSTKVESLQRASLSNP--VRVSVSSKYQTVSTLQSS 263
Query: 243 FFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQ 302
+ + + K+ L+Y++ E + Q +IF +T H + + + R G +G + Q
Sbjct: 264 YICIPHKHKNLYLVYLLNEF--AGQSAIIFTTTVHETQRVAFMLRALGFGAIPLHGQLSQ 321
Query: 303 DARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGR 362
AR + +FR+R L+ TDVAARG+DIP +D V N+D P K ++HRVGR ARAG+
Sbjct: 322 SARLGALGKFRSRSRDILVATDVAARGLDIPSVDVVFNFDLPMDSKTYIHRVGRTARAGK 381
Query: 363 TGTAFSFVTSEDMAYLLDLHLFLSK 387
+G A SFVT D+ L + LSK
Sbjct: 382 SGVAISFVTQYDVEVWLRIEHALSK 406
>gi|143462274|sp|Q0CIQ3.2|RRP3_ASPTN RecName: Full=ATP-dependent rRNA helicase rrp3
Length = 445
Score = 267 bits (683), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 153/379 (40%), Positives = 224/379 (59%), Gaps = 10/379 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L + ++ A + GY PTPIQ + +P+ L G D++ +A TGSGKTAAF++PMLQ
Sbjct: 30 FRELGVIDSLCEACEELGYTAPTPIQERCIPIALEGRDLIGLAETGSGKTAAFVLPMLQA 89
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L Q +LIL+PTR+LA Q + LG +R +LL+GG M SQ L + P
Sbjct: 90 LMDKPQQ--FHSLILAPTRELAQQIAHTVEALGARISVRCTLLIGGMDMISQAIALGKKP 147
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
+I+ATPGRL+ HL + SL++++Y+V DEAD L + F L K+L +L R+T L
Sbjct: 148 HVIVATPGRLLDHLENTKGFSLRTLKYLVLDEADRLLDLDFGPILDKLL-RLLPKRKTYL 206
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKL--AFFTLRQEEKHAALLYMIREH 262
FSAT+ S + +A L DP VR+ V TK KL ++ + + K L+Y++ E
Sbjct: 207 FSATMSSKVESLQRASLSDP--VRVSVSTKNQTASKLLQSYLFIPHKFKDFYLVYLLNER 264
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
+ Q +IF T H + L+++ R G +G + Q AR +++FRAR LI
Sbjct: 265 --AGQMGIIFTRTVHETQRLSIMLRNLGFPAIPIHGQLSQSARLASLNKFRARSRNLLIA 322
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
TDVAARG+DIP +D V+N+D P K ++HRVGR ARAG++G AFSFVT ++ L +
Sbjct: 323 TDVAARGLDIPAVDYVLNYDLPQDSKTYIHRVGRTARAGKSGIAFSFVTQYEVELWLRIE 382
Query: 383 LFLSKPIRA-APSEEEVLL 400
L K + P ++EV++
Sbjct: 383 DALGKKVEEYKPEKDEVMI 401
>gi|259500990|ref|ZP_05743892.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
iners DSM 13335]
gi|302190561|ref|ZP_07266815.1| DEAD-box ATP-dependent RNA helicase [Lactobacillus iners AB-1]
gi|309803755|ref|ZP_07697841.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
LactinV 11V1-d]
gi|309804668|ref|ZP_07698733.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
LactinV 09V1-c]
gi|309806978|ref|ZP_07700960.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
LactinV 03V1-b]
gi|309808565|ref|ZP_07702461.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
LactinV 01V1-a]
gi|309809614|ref|ZP_07703471.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners SPIN
2503V10-D]
gi|312871555|ref|ZP_07731648.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
3008A-a]
gi|312872588|ref|ZP_07732656.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
2062A-h1]
gi|312874281|ref|ZP_07734313.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
2052A-d]
gi|312874733|ref|ZP_07734752.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
2053A-b]
gi|315653950|ref|ZP_07906866.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
iners ATCC 55195]
gi|325912398|ref|ZP_08174793.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners UPII
143-D]
gi|325913097|ref|ZP_08175467.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners UPII
60-B]
gi|329920540|ref|ZP_08277272.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners SPIN
1401G]
gi|349611847|ref|ZP_08891077.1| hypothetical protein HMPREF1027_00504 [Lactobacillus sp. 7_1_47FAA]
gi|259167684|gb|EEW52179.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
iners DSM 13335]
gi|308164164|gb|EFO66425.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
LactinV 11V1-d]
gi|308166060|gb|EFO68278.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
LactinV 09V1-c]
gi|308166598|gb|EFO68795.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
LactinV 03V1-b]
gi|308168193|gb|EFO70315.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
LactinV 01V1-a]
gi|308170095|gb|EFO72131.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners SPIN
2503V10-D]
gi|311089478|gb|EFQ47903.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
2053A-b]
gi|311090154|gb|EFQ48566.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
2052A-d]
gi|311091950|gb|EFQ50326.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
2062A-h1]
gi|311092950|gb|EFQ51301.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
3008A-a]
gi|315488646|gb|EFU78292.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
iners ATCC 55195]
gi|325475740|gb|EGC78911.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners UPII
143-D]
gi|325477518|gb|EGC80660.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners UPII
60-B]
gi|328936216|gb|EGG32669.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners SPIN
1401G]
gi|348608312|gb|EGY58297.1| hypothetical protein HMPREF1027_00504 [Lactobacillus sp. 7_1_47FAA]
Length = 487
Score = 267 bits (683), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 164/463 (35%), Positives = 259/463 (55%), Gaps = 34/463 (7%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F LNL P + +AIKR G++ TPIQ KT+PL+LSG DV+ A+TG+GKTAAF +P+LQ
Sbjct: 3 FSELNLKPELLKAIKRAGFEEATPIQEKTIPLVLSGKDVIGQAQTGTGKTAAFGLPILQT 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L++ Q G++ALI+ PTR+LA+QT + LGR + + ++ GG + Q L Q P
Sbjct: 63 LDKK--QEGIQALIIEPTRELAIQTQEELFRLGRDENAHVQVVYGGADIRRQIRSLKQVP 120
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
+I++ TPGRL+ HL ++L +++V+ DEAD + MGF + + IL S + QTLL
Sbjct: 121 NILVGTPGRLLDHLKR-RTINLSHLKHVILDEADEMLDMGFIQDIESILTFASNDHQTLL 179
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P + + + + DP +V++ + + F L++ EK L +I +
Sbjct: 180 FSATMPKPILQIGEKFMHDPQIVQIKSKELTANLIDQYFVRLKENEKFDILCRLI--DVQ 237
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
+ +++F TK V+ L F+ G + + +GD+ Q R + RF+ K L+ TD
Sbjct: 238 DPELSVVFGRTKRRVDELTRGFQARGYDAAGIHGDLTQTKRMSVLKRFKQGKLDILVATD 297
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
VAARG+DI + +V N+D P P +VHR+GR RAG+ G + +FVT ++ Y+ +
Sbjct: 298 VAARGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGKNGMSITFVTPNEIGYMKTIERL 357
Query: 385 LSK---PIRAAPSEEEVLLDMDGVMS----KIDQAIANGETIYGRFPQ------TVIDLV 431
K P+R PS++E DG +S KI + + + T Y + + + +DLV
Sbjct: 358 TRKKMTPLR-PPSDKEAF---DGQLSIANKKIQELLDSDLTKYTKEAEKLLENNSALDLV 413
Query: 432 SDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRG 474
+ ++ D + D ++ T KPLP K RRG
Sbjct: 414 AALLK---DMAKDAEQVKVEIT-------PEKPLPFKN--RRG 444
>gi|329960847|ref|ZP_08299126.1| ATP-dependent RNA helicase RhlE [Bacteroides fluxus YIT 12057]
gi|328532133|gb|EGF58937.1| ATP-dependent RNA helicase RhlE [Bacteroides fluxus YIT 12057]
Length = 423
Score = 267 bits (683), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 139/365 (38%), Positives = 222/365 (60%), Gaps = 3/365 (0%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE+L L + +A++ +GY PTPIQ K++P++L G D++ A+TG+GKTAAF +P+LQ+
Sbjct: 3 FENLKLIEPILKALQEEGYSTPTPIQEKSIPILLQGKDLLGCAQTGTGKTAAFSIPILQK 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L + + G++ALIL+PTR+LA+Q + + GRYT LR +++ GG + Q +EL +
Sbjct: 63 LYKTDNRKGIKALILTPTRELAIQIGESFEAYGRYTGLRHTVIFGGVGQKPQTDELKRGV 122
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
I++ATPGRL L ++LK++++ V DEAD + MGF + +IL L RQTL
Sbjct: 123 QILVATPGRL-QDLVNQGFINLKALDFFVLDEADRMLDMGFIHDIRRILKFLPAKRQTLF 181
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P + A + L DP V + + + + + + ++EK L++++++
Sbjct: 182 FSATMPPEIETLANSMLTDPEKVEVTPASSTVDTISQSVYFVEKKEKKDLLIHLLKD--P 239
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
S LIF TKH + L + G+ +G+ Q+AR+ ++ F++ LI TD
Sbjct: 240 SIASVLIFTRTKHGADKLARTLSKSGIPAEAIHGNKSQNARQRALTGFKSHTLRVLIATD 299
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
+AARGID+ L +VIN++ P P+ +VHR+GR RAG G A SF SE++ YL D+
Sbjct: 300 IAARGIDVDQLSHVINYELPNIPETYVHRIGRTGRAGHDGIALSFCESEELPYLKDIQKL 359
Query: 385 LSKPI 389
+ K I
Sbjct: 360 IGKTI 364
>gi|313112968|ref|ZP_07798612.1| DEAD/DEAH box helicase [Faecalibacterium cf. prausnitzii KLE1255]
gi|310624733|gb|EFQ08044.1| DEAD/DEAH box helicase [Faecalibacterium cf. prausnitzii KLE1255]
Length = 638
Score = 267 bits (683), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 139/360 (38%), Positives = 211/360 (58%), Gaps = 3/360 (0%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ LNLS + RA++ GY+ P+PIQ +P +LSG D++ A+TG+GKTAAF +PML R
Sbjct: 3 FKELNLSAPLLRAVQEAGYETPSPIQAAAIPPVLSGRDLMGCAQTGTGKTAAFALPMLDR 62
Query: 85 LNQHVP--QGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
L + P +G +RALIL+PTR+LALQ + G+Y LR +++ GG Q E L +
Sbjct: 63 LTANAPRRKGAIRALILTPTRELALQIGESFDAYGKYLKLRSTVIFGGVGQAPQVEALKK 122
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
DI+IA PGRL + + + L ++E V DEAD + MGF + K++ +L RQ
Sbjct: 123 GVDILIACPGRLNDLIGQ-GFIDLSNLEIFVLDEADRMLDMGFVHDVKKVIAKLPGERQN 181
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
L+FSAT+P+ + + A LR P V++D + ++ + + + + K L ++I+
Sbjct: 182 LMFSATMPTEIEQLAAGILRKPAFVKVDPVSSTVDRIQQSLYHVEKGNKKFLLPWLIKNL 241
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
L+F TKH + + ++G+ + +G+ Q AR + F+A KT L+
Sbjct: 242 QPPVVNALVFSRTKHGADKIAKDLTKQGIPAAAIHGNKSQTARVTALENFKAGKTKVLVA 301
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
TD+AARGIDI L +V N+D P P+ +VHR+GR ARAG GTA SF E+ YL +
Sbjct: 302 TDIAARGIDISELSHVFNYDLPEVPETYVHRIGRTARAGADGTAVSFCAPEEQEYLAGIE 361
>gi|160942681|ref|ZP_02089924.1| hypothetical protein FAEPRAM212_00153 [Faecalibacterium prausnitzii
M21/2]
gi|158446036|gb|EDP23039.1| DEAD/DEAH box helicase [Faecalibacterium prausnitzii M21/2]
Length = 641
Score = 267 bits (682), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 138/356 (38%), Positives = 211/356 (59%), Gaps = 3/356 (0%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ LNLS + RA++ GY+ P+PIQ +P +L+G D++ A+TG+GKTAAF +PML R
Sbjct: 3 FKELNLSAPLLRAVQEAGYETPSPIQAAAIPPVLAGRDLMGCAQTGTGKTAAFALPMLDR 62
Query: 85 LNQHVP--QGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
L + P +G VRALIL+PTR+LALQ + + G+Y LR +++ GG Q E L +
Sbjct: 63 LTANAPRRKGAVRALILTPTRELALQIGESFEAYGKYLKLRSTVIFGGVGQAPQVEALKK 122
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
DI+IA PGRL + + + L ++E V DEAD + MGF + K++ +L RQ
Sbjct: 123 GVDILIACPGRLNDLIGQ-GFIDLSALEIFVLDEADRMLDMGFVHDVKKVIAKLPAQRQN 181
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
L+FSAT+P+ + + A L DP V++D + ++ + + + + K L ++I+
Sbjct: 182 LMFSATMPAEIEQLAAGILHDPAFVKVDPVSSTVDRIQQSLYYVEKGNKKLLLPWLIKNL 241
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
L+F TKH + + ++G+ + +G+ Q AR + F++ KT L+
Sbjct: 242 QPPVVNALVFSRTKHGADKIAKDLTKQGIPAAAIHGNKSQTARVTALEDFKSGKTRVLVA 301
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
TD+AARGIDI L +V N+D P P+ +VHR+GR ARAG GTA SF E+ YL
Sbjct: 302 TDIAARGIDISELSHVFNYDLPEVPETYVHRIGRTARAGADGTAVSFCAPEEQEYL 357
>gi|442609095|ref|ZP_21023836.1| ATP-dependent RNA helicase VCA0768 [Pseudoalteromonas luteoviolacea
B = ATCC 29581]
gi|441749707|emb|CCQ09898.1| ATP-dependent RNA helicase VCA0768 [Pseudoalteromonas luteoviolacea
B = ATCC 29581]
Length = 409
Score = 267 bits (682), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 154/372 (41%), Positives = 223/372 (59%), Gaps = 5/372 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+SL L P + A+ G++ PTPIQ +P++L+G D++A A TGSGKTAAFL+P+L R
Sbjct: 3 FQSLGLEPQLLDALSSLGFEQPTPIQLDAIPVVLTGKDLLASAETGSGKTAAFLLPILNR 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L Q V +G RAL+L+PTR+LA Q +K +EL T+LR LL GG ++ Q E LAQ
Sbjct: 63 LVQTVERGIPRALVLAPTRELAQQIVKHGEELAAKTELRFVLLQGGANIGPQCERLAQGV 122
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
DI++ATPGRL+ HL + +SL ++E VV+DEAD L MGF +++ +I +L N Q+LL
Sbjct: 123 DIVVATPGRLLDHLIK-GSLSLSAIETVVYDEADRLLDMGFKDEIQRIRKRLPTNPQSLL 181
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+ A+ A L P + + K + + F+ + E+K Y+I ++
Sbjct: 182 FSATIDDAIENLANVLLDKPIRISVAGTNKAATPIIQRFYAVDPEKKQKLAAYLIGKN-- 239
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
+ +Q L+F TK V+ F +GL S +GD Q R + +F+ K L+ TD
Sbjct: 240 NWRQVLVFARTKQLVDEYVQEFILDGLPASALHGDKTQGHRNKALEQFKDGKIRVLVATD 299
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
VAARGIDIP L VIN + P + ++HR+GR RAG G A SFV+ ++ L +L +
Sbjct: 300 VAARGIDIPALSVVINMELPFVAEDYIHRIGRTGRAGNEGLALSFVSIDEEWMLQELEVL 359
Query: 385 LSKPIRAAPSEE 396
L + R P E
Sbjct: 360 LDE--RLTPQWE 369
>gi|358392056|gb|EHK41460.1| hypothetical protein TRIATDRAFT_162817, partial [Trichoderma
atroviride IMI 206040]
Length = 760
Score = 267 bits (682), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 149/367 (40%), Positives = 218/367 (59%), Gaps = 8/367 (2%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
+EK KK + F+ ++LS + R I G+ PTPIQ KT+P+ L G DVV A TGSG
Sbjct: 235 KEKSGKKVDASSFQVMSLSRPIMRGITAVGFTKPTPIQAKTIPIALMGKDVVGGAVTGSG 294
Query: 73 KTAAFLVPMLQRL---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVG 129
KTAAF++P+L+RL + +P R +IL+PTR+LA+Q +L +TD++ +L VG
Sbjct: 295 KTAAFVLPILERLLYRPKKIPT--TRVVILTPTRELAIQCHAVATKLAAHTDIKFTLAVG 352
Query: 130 GDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQL 189
G S+++Q EL PD+IIATPGR + H+ S+ +VE +V DEAD + GFA++L
Sbjct: 353 GLSLKAQETELRLRPDVIIATPGRFIDHMRNSASFSVDTVEILVLDEADRMLEDGFADEL 412
Query: 190 HKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR-- 247
++IL L ++RQT+LFSAT+ S + K GL P V +D K + L F LR
Sbjct: 413 NEILTTLPKSRQTMLFSATMTSTVDRLIKVGLNKPVRVMVDSQKKTAGTLIQEFVRLRPG 472
Query: 248 QEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKI 307
+EEK L I ++ + ++ +IF K ++F G + +G M+Q R
Sbjct: 473 REEKRMGYLAHICKNFYT-EKVIIFFRQKKDAHRARIIFGLLGFSCAELHGSMNQTQRIA 531
Query: 308 HVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAF 367
V FR K +L+ TD+A+RG+DI +D VIN++ P +I+VHRVGR ARAGRTG +
Sbjct: 532 SVENFRDGKVSYLLATDLASRGLDIKGVDTVINYEAPQSVEIYVHRVGRTARAGRTGISV 591
Query: 368 SFVTSED 374
+ D
Sbjct: 592 TLAAEPD 598
>gi|295104477|emb|CBL02021.1| Superfamily II DNA and RNA helicases [Faecalibacterium prausnitzii
SL3/3]
Length = 641
Score = 266 bits (681), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 138/356 (38%), Positives = 211/356 (59%), Gaps = 3/356 (0%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ LNLS + RA++ GY+ P+PIQ +P +L+G D++ A+TG+GKTAAF +PML R
Sbjct: 3 FKELNLSAPLLRAVQEAGYETPSPIQAAAIPPVLAGRDLMGCAQTGTGKTAAFALPMLDR 62
Query: 85 LNQHVP--QGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
L + P +G VRALIL+PTR+LALQ + + G+Y LR +++ GG Q E L +
Sbjct: 63 LTANAPRRKGAVRALILTPTRELALQIGESFEAYGKYLKLRSTVIFGGVGQAPQVEALKK 122
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
DI+IA PGRL + + + L ++E V DEAD + MGF + K++ +L RQ
Sbjct: 123 GVDILIACPGRLNDLIGQ-GFIDLSALEIFVLDEADRMLDMGFVHDVKKVIAKLPAQRQN 181
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
L+FSAT+P+ + + A L DP V++D + ++ + + + + K L ++I+
Sbjct: 182 LMFSATMPAEIEQLAAGILHDPAFVKVDPVSSTVDRIQQSLYYVEKGNKKLLLPWLIKNL 241
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
L+F TKH + + ++G+ + +G+ Q AR + F++ KT L+
Sbjct: 242 QPPVVNALVFSRTKHGADKIAKDLTKQGIPAAAIHGNKSQTARVTALEDFKSGKTRVLVA 301
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
TD+AARGIDI L +V N+D P P+ +VHR+GR ARAG GTA SF E+ YL
Sbjct: 302 TDIAARGIDISELSHVFNYDLPEVPETYVHRIGRTARAGADGTAVSFCAPEEQEYL 357
>gi|302036818|ref|YP_003797140.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii]
gi|190343232|gb|ACE75620.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii]
gi|300604882|emb|CBK41215.1| ATP-dependent RNA helicase [Candidatus Nitrospira defluvii]
Length = 431
Score = 266 bits (681), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 147/365 (40%), Positives = 217/365 (59%), Gaps = 5/365 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+SL +SP + R + + G+ PT IQ + +P L+G DV+ A+TG+GKTAAF++PML+R
Sbjct: 9 FDSLGVSPTLLRNLTKAGFAEPTAIQAQAIPHALAGRDVLGCAQTGTGKTAAFVIPMLER 68
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L+ P+G RALIL+PTR+LA+Q LGR L + +VGG M++Q L Q P
Sbjct: 69 LS-GTPKGQPRALILAPTRELAIQIQATIDTLGRDLQLFATTVVGGADMQAQVRGLRQRP 127
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
DII+ATPGRL+ H+ +SL ++ +V DEAD + MGFA+Q+++IL + E RQTLL
Sbjct: 128 DIIVATPGRLLDHMWN-GTISLLAMSILVLDEADRMLDMGFAQQINQILDAMPEERQTLL 186
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P+ LA A+A ++DP V + + + A + K+ L+ +++ S
Sbjct: 187 FSATMPNDLARLAQASVKDPVRVMVTKSATTADGVTQAVHHTTHDRKNGLLMSLLQ---S 243
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
L+F TKH + L L G +V +G R+ + FR L+ TD
Sbjct: 244 ESDTVLVFARTKHRADRLGNLLDSAGHRVAVLHGGRTLPQRRAALEGFRRGTYRVLVATD 303
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
+AARGID+ + +VIN+D P P+ +VHR+GR AR TG A +FVTSED L +
Sbjct: 304 IAARGIDVANIAHVINYDVPNCPEDYVHRIGRTARMRTTGRATTFVTSEDQEQLRAIERL 363
Query: 385 LSKPI 389
L + +
Sbjct: 364 LGQAV 368
>gi|119496543|ref|XP_001265045.1| ATP-dependent RNA helicase , putative [Neosartorya fischeri NRRL
181]
gi|143462290|sp|A1D405.1|RRP3_NEOFI RecName: Full=ATP-dependent rRNA helicase rrp3
gi|119413207|gb|EAW23148.1| ATP-dependent RNA helicase , putative [Neosartorya fischeri NRRL
181]
Length = 472
Score = 266 bits (680), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 157/393 (39%), Positives = 228/393 (58%), Gaps = 10/393 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L + + A + GYK PTPIQ +++PL L G D++ +A TGSGKTAAF +P+LQ
Sbjct: 54 FKDLGIIDQLCEACETMGYKAPTPIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQA 113
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L + PQ LIL+PTR+LA Q K + LG ++R +++VGG M SQ L + P
Sbjct: 114 LMEK-PQS-FFGLILAPTRELAFQISKSFESLGSTINVRCAVIVGGMDMVSQSIALGKKP 171
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
II+ATPGRL+ HL + SL++++Y+V DEAD L M F L KIL L R+T L
Sbjct: 172 HIIVATPGRLLDHLENTKGFSLRTLKYLVMDEADRLLDMDFGPLLDKILKVLPRERRTFL 231
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDT---KISPDLKLAFFTLRQEEKHAALLYMIRE 261
FSAT+ S + +A L +P +R+ V + + L ++ L + K L+Y++ E
Sbjct: 232 FSATMSSKVESLQRASLSNP--LRVSVSSNKYQTVSTLLQSYLFLPHKHKDIYLVYLLNE 289
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ Q +IF T H + ++ L R G +G + Q AR + +FR+R L+
Sbjct: 290 FVG--QSAIIFTRTVHETQRISFLLRSLGFGAIPLHGQLSQSARLGALGKFRSRSRDILV 347
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TDVAARG+DIP +D V+N+D P K +VHRVGR ARAG++G A SFVT D+ L +
Sbjct: 348 ATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQYDVEIWLRI 407
Query: 382 HLFLSKPIRAAPSE-EEVLLDMDGVMSKIDQAI 413
L K ++ E +EV++ + V QAI
Sbjct: 408 EGALGKKLKEYELEKDEVMVLAERVGEAQRQAI 440
>gi|328870452|gb|EGG18826.1| putative RNA helicase [Dictyostelium fasciculatum]
Length = 507
Score = 265 bits (678), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 152/378 (40%), Positives = 226/378 (59%), Gaps = 7/378 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L + P + A R G+K PT IQR+++P ++G D++ +A+TGSGKTAAF +P+LQ+
Sbjct: 84 FDQLGMHPQIIEACVRMGFKKPTEIQRESIPHAIAGRDIIGLAQTGSGKTAAFAIPILQQ 143
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L Q PQ + ALILSPTR+LA Q + + LG ++ +LVGG + Q LA+ P
Sbjct: 144 LLQS-PQP-LFALILSPTRELAFQISQQFEALGAVIGVKCGVLVGGMDVMQQAMVLARKP 201
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
II+ TPGR+M+HL + LK+++++V DEAD L M F E+++KIL + +NR T L
Sbjct: 202 HIIVGTPGRVMYHLENTKGFHLKALKFLVMDEADRLLSMDFEEEINKILKVIPKNRNTYL 261
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISP--DLKLAFFTLRQEEKHAALLYMIREH 262
FSAT+ S +A+ KA L +P V++ TK S L + + + K L Y++ E
Sbjct: 262 FSATMTSKVAKLQKASLVNPIKVQV-ASTKYSTVDTLVQQYCFIPYQHKDCYLTYILNEL 320
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
S ++FV+T L+V+ R GL G+MDQ R +++F++ L+
Sbjct: 321 --SGNSAIVFVATCAASNRLSVMLRNLGLGAIPINGNMDQTKRLASLNKFKSSVKNILVA 378
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
TDVAARG+DIP + V+N+D P K +VHRVGR ARAG++G A + VT D+ +
Sbjct: 379 TDVAARGLDIPSVGLVVNYDIPVNSKEYVHRVGRTARAGQSGRAITLVTQYDVEVYQRIE 438
Query: 383 LFLSKPIRAAPSEEEVLL 400
LSK + PSE +L
Sbjct: 439 FALSKKLEEFPSESSSVL 456
>gi|427413381|ref|ZP_18903573.1| hypothetical protein HMPREF9282_00980 [Veillonella ratti
ACS-216-V-Col6b]
gi|425716197|gb|EKU79183.1| hypothetical protein HMPREF9282_00980 [Veillonella ratti
ACS-216-V-Col6b]
Length = 523
Score = 265 bits (678), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 142/377 (37%), Positives = 231/377 (61%), Gaps = 7/377 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE L +S + RA+ G++ PTPIQ++ +P+ +SG D++ A+TG+GKTAAF +P L++
Sbjct: 5 FEELQISEPILRALNDMGFEEPTPIQKEAIPVAMSGLDMIGQAQTGTGKTAAFGIPALEQ 64
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
+++H+ V+ LILSPTR+LA+Q + ++ ++T ++ + GG ++ QF L +NP
Sbjct: 65 VDEHL--RAVQVLILSPTRELAIQVAEELNKMAQHTHIQALPIYGGQDIQRQFRSLRKNP 122
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
II+ATPGRLM H+ E ++ +V+ +V DEAD + MGF + ++KIL + E RQTLL
Sbjct: 123 QIIVATPGRLMDHM-ERGSINFDNVKVIVLDEADEMLNMGFIDDINKILAAVPEQRQTLL 181
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P A+ A+ L++P L+R+ T+++ DL ++ Q+ + LL + + +
Sbjct: 182 FSATMPPAIQTLAENYLKEPRLIRMK-PTQVTMDLIEQYYIEVQDRQKFDLLCRLLD-MQ 239
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
+ + ++F TK V+ + ++ G +GD+ Q R + +FR L+ TD
Sbjct: 240 APELAIVFGRTKRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVATD 299
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
VAARG+DI + +V N+D P P+ +VHRVGR RAG+ G A +FV +M +L +
Sbjct: 300 VAARGLDISGVTHVYNYDLPQDPESYVHRVGRTGRAGKAGMANTFVIPREMEHLHAIERL 359
Query: 385 LSKPI--RAAPSEEEVL 399
+ I R APS EVL
Sbjct: 360 TKRKIARRKAPSLGEVL 376
>gi|302412236|ref|XP_003003951.1| ATP-dependent rRNA helicase RRP3 [Verticillium albo-atrum VaMs.102]
gi|261357856|gb|EEY20284.1| ATP-dependent rRNA helicase RRP3 [Verticillium albo-atrum VaMs.102]
Length = 486
Score = 265 bits (678), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 148/378 (39%), Positives = 222/378 (58%), Gaps = 6/378 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L + ++ A + GYK PTPIQ K++PL L+G DV+ +A TGSGKTAAF +P+LQ
Sbjct: 63 FADLGVVESLVEATEALGYKHPTPIQEKSIPLALAGRDVIGLAETGSGKTAAFALPVLQA 122
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L + G+ A++++PTR+LA Q + + LG +LR +++VGG M Q L + P
Sbjct: 123 LLEK--PSGLFAVVMAPTRELAAQIAQTFEALGSLINLRCAVIVGGLDMVQQAIALGKKP 180
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
+++ATPGRL+ HL + + SL+S++Y+V DEAD L M F + KIL + R T L
Sbjct: 181 HVVVATPGRLLDHLEKTKGFSLRSLKYLVLDEADRLLDMDFGPSIDKILKFIPRERHTYL 240
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVD-TKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
FSAT+ S + +A L+DP V + + ++ L F + K +++I I
Sbjct: 241 FSATMSSKVESLQRASLKDPARVSVQSNGYQVVSTLLQNFLFIPHALKDVYCVHLINSFI 300
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
Q T++F+ T H + L +L R G +G + Q AR +++FRA L+ T
Sbjct: 301 G--QTTIVFLRTVHDTQRLAILLRTLGFSALPLHGQLSQSARLGALNKFRAGSRDILVAT 358
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHL 383
DVAARG+DIP +D VIN+D P K ++HRVGR ARAG++G A S VT D+ L +
Sbjct: 359 DVAARGLDIPNVDVVINYDLPQDSKTYIHRVGRTARAGKSGRALSLVTQYDLEIWLRIEA 418
Query: 384 FLSKPIRAAPSE-EEVLL 400
+ K + P+E EEV++
Sbjct: 419 SMGKKLDEFPTEKEEVMV 436
>gi|78776226|ref|YP_392541.1| DEAD/DEAH box helicase [Sulfurimonas denitrificans DSM 1251]
gi|78496766|gb|ABB43306.1| DEAD/DEAH box helicase-like protein [Sulfurimonas denitrificans DSM
1251]
Length = 398
Score = 265 bits (676), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 140/356 (39%), Positives = 216/356 (60%), Gaps = 5/356 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F +L LS + +AIK +GY PTPIQ++ +P+ILS D++A A+TG+GKTA F +P+L+
Sbjct: 3 FTTLGLSAPILKAIKDQGYTKPTPIQKQAIPIILSKKDILAGAQTGTGKTAGFTLPLLEL 62
Query: 85 L--NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
L ++ + +RALIL+PTR+LA Q + G+Y +++ GG S+ Q L +
Sbjct: 63 LSRDKSSTKKRIRALILTPTRELAAQVGESVSIYGKYLSFTSTIIYGGVSINPQLSALRK 122
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
DI+IATPGRL+ HLS+ + + LK VE++V DEAD + MGF + K+L L +N+QT
Sbjct: 123 GVDIVIATPGRLLDHLSQ-KSIDLKDVEFLVLDEADRMLDMGFINDIKKVLAVLPKNKQT 181
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
LLFSAT + + + L P L+ ++ K + +K + + +E K L+++I+E
Sbjct: 182 LLFSATYSDEIKKLSDRLLNSPVLIEVERPNKTAQSIKQIVYPVDKERKRELLVHLIKE- 240
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
QQ L+F TKH L+ ++G+ S +G+ Q+AR + F+ L+
Sbjct: 241 -GKWQQVLVFTRTKHGANKLSAQLEKDGISSSAIHGNKSQNARMKALQEFKDGDIRVLVA 299
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
TD+AARGIDI L +VIN++ P P+ +VHR+GR RAG +G A S V ++ YL
Sbjct: 300 TDIAARGIDIDQLPHVINYELPNVPEDYVHRIGRTGRAGSSGDAISLVCIDEHEYL 355
>gi|315645365|ref|ZP_07898490.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
gi|315279407|gb|EFU42713.1| DEAD/DEAH box helicase domain protein [Paenibacillus vortex V453]
Length = 506
Score = 264 bits (675), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 139/375 (37%), Positives = 226/375 (60%), Gaps = 7/375 (1%)
Query: 19 KSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78
K S F+ LN+SP + +A+ ++ YK PTPIQ + +P +L+G D++ A+TG+GKTAAF
Sbjct: 13 KGDSMTFQDLNISPVILKALAKENYKEPTPIQAQAIPAVLAGRDLLGCAQTGTGKTAAFS 72
Query: 79 VPMLQRLNQHVPQGG----VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSME 134
VPM+Q LN+ P+ G +RAL+LSPTR+LALQ K ++T LR + +VGG S +
Sbjct: 73 VPMIQLLNEQPPKPGMARRIRALVLSPTRELALQISDNVKAYSQFTKLRSTAIVGGVSQK 132
Query: 135 SQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILG 194
+Q L Q DI+IATPGRL+ +++ + + L+ VE +V DEAD + MGF + +I+
Sbjct: 133 TQERALQQGADILIATPGRLLDLMNQ-KRIDLQHVEILVLDEADRMLDMGFIHDVKRIIS 191
Query: 195 QLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAA 254
++ +QTL FSAT+P+ + + K L++P V + + + +K + + L K
Sbjct: 192 KMPSKKQTLFFSATMPAEITQLVKTLLQNPVKVEITPVSSTAERIKQSVYLLETGNKQKQ 251
Query: 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRA 314
L ++++ S L+F TK + + + + +G+ Q +R+ + F++
Sbjct: 252 LNELMKD--PSIVSALVFTRTKRGADRVVRDLTKVNITAQAIHGNKSQVSRQTALKNFKS 309
Query: 315 RKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
+T L+ TD+AARGIDI L +VIN++ P P+ +VHR+GR RAG +GTA SF ++
Sbjct: 310 GETRVLVATDIAARGIDIDELSHVINFNLPNIPETYVHRIGRTGRAGLSGTAISFCEVDE 369
Query: 375 MAYLLDLHLFLSKPI 389
+ +L D+ + K I
Sbjct: 370 IPFLRDIEKLIGKSI 384
>gi|257440057|ref|ZP_05615812.1| putative ATP-dependent RNA helicase RhlE [Faecalibacterium
prausnitzii A2-165]
gi|257197409|gb|EEU95693.1| DEAD/DEAH box helicase [Faecalibacterium prausnitzii A2-165]
Length = 641
Score = 264 bits (675), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 139/360 (38%), Positives = 208/360 (57%), Gaps = 3/360 (0%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F LNLS V RA+ + GY+ P+PIQ +P +L+G D++ A+TG+GKTAAF +PML R
Sbjct: 3 FNELNLSAPVLRAVAQAGYESPSPIQAAAIPPVLAGRDLMGCAQTGTGKTAAFALPMLDR 62
Query: 85 LNQHVP--QGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
L P +G +RALIL+PTR+LALQ + + G+Y LR +++ GG Q L +
Sbjct: 63 LTASAPRKKGAIRALILTPTRELALQIGESFEAYGKYLTLRSTVIFGGVGQAPQVAALKK 122
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
DI+IA PGRL + L + L ++E V DEAD + MGF + K++ +L RQ
Sbjct: 123 GVDILIACPGRL-NDLVGQGLLDLSNIEIFVLDEADRMLDMGFVHDVKKVIAKLPRQRQN 181
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
L+FSAT+P + + A L DP V++D + ++ + + + + K L ++I+
Sbjct: 182 LMFSATMPKEIEQLAAGILHDPAFVKVDPVSSTVDRIQQSLYFVEKGNKKFLLPWLIKNL 241
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
L+F TKH + + ++G+ + +G+ Q AR + F+A KT L+
Sbjct: 242 KPEVVNALVFSRTKHGADKIAKDLNKQGIPAAAIHGNKSQTARVTALEDFKAGKTRVLVA 301
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
TD+AARGIDI L +V N+D P P+ +VHR+GR ARAG GTA SF E+ YL +
Sbjct: 302 TDIAARGIDISELSHVFNYDLPEVPETYVHRIGRTARAGADGTAVSFCAPEEKEYLAGIE 361
>gi|295101226|emb|CBK98771.1| Superfamily II DNA and RNA helicases [Faecalibacterium prausnitzii
L2-6]
Length = 648
Score = 264 bits (675), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 137/359 (38%), Positives = 206/359 (57%), Gaps = 3/359 (0%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L LS + +A+ GY+ P+PIQ +P +L G D++ A+TG+GKTAAF +PML R
Sbjct: 3 FNDLKLSAPLLKAVSEAGYETPSPIQASAIPPVLEGRDLMGCAQTGTGKTAAFALPMLDR 62
Query: 85 LNQHVP--QGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
L+ P +G VRALIL+PTR+LALQ + G+Y LR +++ GG Q E + +
Sbjct: 63 LSAAAPRRKGAVRALILTPTRELALQIGESFDAYGKYLKLRSTVIFGGVGQAPQVEAIRK 122
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
DI+IA PGRL + + + L ++E V DEAD + MGF + K++ +L RQ
Sbjct: 123 GVDILIACPGRLNDLIGQGH-IDLSNLEVFVLDEADRMLDMGFVHDVKKVIAKLPAKRQN 181
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
L+FSAT+P + + A L DP V++D + + + + + + K L ++I+
Sbjct: 182 LMFSATMPKEIEQLAAGILHDPAFVKVDPVSSTVERIDQSLYFVEKGNKKLLLPWLIKNL 241
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
Q L+F TKH + + ++G+ + +G+ Q AR + F+ KT L+
Sbjct: 242 TPPVQNALVFSRTKHGADKIARDLTKQGITAAAIHGNKSQTARVAALEGFKEGKTRVLVA 301
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TD+AARGIDI L +V N+D P P+ +VHR+GR ARAG GTA SF E+M YL +
Sbjct: 302 TDIAARGIDISELSHVFNYDLPEVPETYVHRIGRTARAGADGTAVSFCAPEEMEYLAGI 360
>gi|219123243|ref|XP_002181938.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406539|gb|EEC46478.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 433
Score = 264 bits (675), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 150/379 (39%), Positives = 222/379 (58%), Gaps = 9/379 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+SL + A R +K T IQ +P G D++ +A TGSGKT AF +P+LQ
Sbjct: 41 FKSLGACETLQEACDRLEWKTATRIQASVLPEAFEGRDIIGLAETGSGKTGAFCLPILQG 100
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L + P G ALIL+PTR+LA Q L+ + LG+ +VGG SQ L +NP
Sbjct: 101 LLRK-PVKGTAALILTPTRELAFQILQVVQGLGQAMGATAVCVVGGVDRTSQAIALGRNP 159
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
++IATPGRL+ HL + + +L V Y+V DEAD + M F E+LH+IL + E RQTLL
Sbjct: 160 HVVIATPGRLLDHLKDTKGFNLNKVRYLVLDEADRMLSMDFEEELHQILDNMPEQRQTLL 219
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKL--AFFTLRQEEKHAALLYMIREH 262
FSAT+ + +A+ +A L+DP V++ V TK +L ++ + + K L Y+I EH
Sbjct: 220 FSATMTTQVAKLERASLKDP--VKVQVSTKFQTPKQLLQSYLFIPAKYKDCYLTYLINEH 277
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVC-YGDMDQDARKIHVSRFRARKTMFLI 321
+ Q L+F +T ++V+ L ++ R G P+VC +G MDQ R + +F + L+
Sbjct: 278 --AGQSILVFGATCNNVQRLALMLRNLGF-PAVCLHGQMDQSKRLGALQKFSSGDRTILL 334
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TDVA+RG+D+P +D VIN+D P K ++HRVGR ARAG++G A + VT D+ L
Sbjct: 335 CTDVASRGLDLPQVDLVINFDLPGHGKEYIHRVGRTARAGKSGRAIAMVTQYDVEVYQRL 394
Query: 382 HLFLSKPIRAAPSEEEVLL 400
L K + ++E+ +L
Sbjct: 395 EALLGKKLDEWKTDEKTVL 413
>gi|429859431|gb|ELA34212.1| ATP-dependent RNA helicase drs1 [Colletotrichum gloeosporioides
Nara gc5]
Length = 772
Score = 264 bits (675), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 147/363 (40%), Positives = 213/363 (58%), Gaps = 10/363 (2%)
Query: 18 KKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77
KK + F+ ++LS + R + G+ PTPIQ KT+P+ L G DVV A TGSGKTAAF
Sbjct: 244 KKDIASSFQGMSLSRPLLRGLAAVGFSKPTPIQAKTVPIALMGKDVVGGAVTGSGKTAAF 303
Query: 78 LVPMLQRL---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSME 134
+VP+L+RL + VP R +IL+PTR+LA+Q +L YTD++ +L VGG S++
Sbjct: 304 VVPILERLLYRPKKVPTS--RVVILTPTRELAIQCHAVATKLAAYTDIKFTLAVGGLSLK 361
Query: 135 SQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILG 194
Q EL PD+IIATPGR + H+ ++ +VE +V DEAD + GFA++L++IL
Sbjct: 362 QQEVELRLRPDVIIATPGRFIDHMRNSASFNVDTVEILVLDEADRMLEDGFADELNEILT 421
Query: 195 QLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAA 254
L ++RQT+LFSAT+ S++ + G+ P V +D K L F LR +
Sbjct: 422 TLPKSRQTMLFSATMTSSVDRLVRVGMNKPARVMVDSQKKTVGTLVQEFIRLRPGREEKR 481
Query: 255 LLYMIREHISSDQQT---LIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSR 311
+ Y+I HI T +IF K ++F G+ + +G M+Q R V
Sbjct: 482 MGYLI--HICKTMHTERVIIFFRQKKEAHRARIIFGMLGMSCAELHGSMNQAQRIASVEN 539
Query: 312 FRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVT 371
FR K +L+ TD+A+RG+DI +D VIN++ P K +I+VHRVGR ARAGR+G A +
Sbjct: 540 FRDGKVNYLLATDLASRGLDIKGVDTVINYEAPQKLEIYVHRVGRTARAGRSGVAVTLAA 599
Query: 372 SED 374
D
Sbjct: 600 EPD 602
>gi|427429668|ref|ZP_18919655.1| ATP-dependent RNA helicase RhlE [Caenispirillum salinarum AK4]
gi|425879905|gb|EKV28606.1| ATP-dependent RNA helicase RhlE [Caenispirillum salinarum AK4]
Length = 469
Score = 264 bits (674), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 141/370 (38%), Positives = 222/370 (60%), Gaps = 6/370 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L L+ ++ +A+ GY+ PTPIQ K +PL+L G DV+ +A+TG+GKTAAF +PMLQR
Sbjct: 4 FTDLGLNESLLKALAEDGYETPTPIQAKAIPLLLDGRDVLGIAQTGTGKTAAFALPMLQR 63
Query: 85 L---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L N+ G RALIL+PTR+LA+Q K GR+ R + + GG M Q L+
Sbjct: 64 LMDSNRRAGPKGCRALILTPTRELAVQINDSIKSYGRHLRHRTACIFGGVGMNPQIRALS 123
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
D++IATPGRL+ +++ + VE V DEAD + MGF + K++ +L +R
Sbjct: 124 GGVDLLIATPGRLIDLMNQGY-VRFDKVEEFVLDEADRMLDMGFVRDVRKVVDRLPGDRH 182
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
TLLFSAT+P+ + + A LRDP V + + + ++ + +++K AAL ++I
Sbjct: 183 TLLFSATMPTGVRDLADGLLRDPVKVEVTPQSTTAERIEQRVLFVNRDDKRAALTHIIDS 242
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
H ++ L+F TKH + L ++G+ + +G+ Q+AR+ + FR K L+
Sbjct: 243 H--GIERVLVFTRTKHGADKLVRQLEQDGVGAAAIHGNKSQNARQAALKDFRKGKVKALV 300
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TD+AARGIDI L +V+N++ P +P+ +VHR+GR ARAG +G A S ++++ YL D+
Sbjct: 301 ATDIAARGIDIDGLTHVVNFELPNEPESYVHRIGRTARAGASGMAISLCDTDELFYLRDI 360
Query: 382 HLFLSKPIRA 391
+ + + A
Sbjct: 361 ERAIRQTVEA 370
>gi|169831556|ref|YP_001717538.1| DEAD/DEAH box helicase [Candidatus Desulforudis audaxviator MP104C]
gi|169638400|gb|ACA59906.1| DEAD/DEAH box helicase domain protein [Candidatus Desulforudis
audaxviator MP104C]
Length = 533
Score = 264 bits (674), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 137/361 (37%), Positives = 218/361 (60%), Gaps = 5/361 (1%)
Query: 18 KKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77
KKS S F L +SP + RA+ G++ P+PIQ +T+P +L G D+V A+TG+GKTAAF
Sbjct: 3 KKSASASFADLGVSPEILRAVDDMGFEEPSPIQLQTIPQLLDGRDLVGQAQTGTGKTAAF 62
Query: 78 LVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF 137
+P+L RL +G + L+++PTR+LA+Q + +GRYT+ R+ + GG S+ Q
Sbjct: 63 AIPLLMRLQAR--RGWPQVLVMTPTRELAIQVAEEFARVGRYTNTRVLPVYGGQSIGRQI 120
Query: 138 EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS 197
+ L + D+++ TPGR++ HL+ + + L+ ++ VV DEAD + MGF + + IL
Sbjct: 121 KTLQRGVDVVVGTPGRVLDHLNR-KTLRLEQLQAVVLDEADEMLDMGFIDDIESILNATP 179
Query: 198 ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLY 257
+RQTLLFSAT+P +A A+ +R P V ++ + +PD+ ++ LR + AL
Sbjct: 180 PSRQTLLFSATIPGPIARLAEKYMRTPVHVSINPEYVAAPDIWQVYYELRNIDHLEALCR 239
Query: 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKT 317
++ + ++ +IF TK V+ L R G +GD++Q+ R + FR +
Sbjct: 240 IL--DAEAVERAIIFCRTKRRVDELAEALRSRGYSADHIHGDLEQNQRNRVMGAFREGEI 297
Query: 318 MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAY 377
L+ TDVAARGID+ + +VIN+D P P+ +VHR+GR RAGRTGTA + V +++
Sbjct: 298 DLLVATDVAARGIDVQNISHVINYDCPQDPESYVHRIGRTGRAGRTGTAITLVYPKELPL 357
Query: 378 L 378
L
Sbjct: 358 L 358
>gi|410100568|ref|ZP_11295528.1| hypothetical protein HMPREF1076_04706 [Parabacteroides goldsteinii
CL02T12C30]
gi|409215603|gb|EKN08602.1| hypothetical protein HMPREF1076_04706 [Parabacteroides goldsteinii
CL02T12C30]
Length = 428
Score = 263 bits (672), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 140/392 (35%), Positives = 233/392 (59%), Gaps = 6/392 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE L L + +A+ ++GY +PTPIQ + +P +L G D++ A+TG+GKTAAF +P++Q
Sbjct: 3 FEQLELIEPIQKALTKEGYTIPTPIQAEAIPYVLDGYDLLGCAQTGTGKTAAFSIPIIQN 62
Query: 85 L---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L QH G++ALIL+PTR+LA+Q + G+YT +R +++ GG + Q + L
Sbjct: 63 LYNERQHGKVRGIKALILTPTRELAIQIGESFTAYGKYTGVRHTVIFGGVGQKPQTDALE 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ D++IATPGRL+ +++ +SLK ++Y V DEAD + MGF + +IL L + RQ
Sbjct: 123 RGVDVLIATPGRLLDLINQ-GFISLKYLDYFVLDEADRMLDMGFIHDIKRILPLLPKKRQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
+L FSAT+P + A L +P V + + + + + + + EK + L +++++
Sbjct: 182 SLFFSATMPPEIERLAGTILHEPQKVEVTPASSTVDKIDQSVYFVEKAEKVSLLTHLLKD 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
SS + L+F TKH + + + + + +G+ Q AR+ ++ F+ T LI
Sbjct: 242 --SSLESVLVFTRTKHGADKVARVLAKANIGAEAIHGNKSQTARQRALTNFKDHTTRVLI 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TD+AARGID+ L +VIN++ P P+ +VHR+GR RAGR+G A+SF +E++ YL D+
Sbjct: 300 ATDIAARGIDVDHLSHVINYELPNVPETYVHRIGRTGRAGRSGVAYSFCDAEEVPYLKDI 359
Query: 382 HLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAI 413
+ K I A E D+ +++ +AI
Sbjct: 360 QKLIGKQIPVAGGNEFETADVKAAVAEKKEAI 391
>gi|401679335|ref|ZP_10811267.1| DEAD/DEAH box helicase [Veillonella sp. ACP1]
gi|400219664|gb|EJO50527.1| DEAD/DEAH box helicase [Veillonella sp. ACP1]
Length = 523
Score = 263 bits (672), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 145/380 (38%), Positives = 229/380 (60%), Gaps = 13/380 (3%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE L +S V RA+ G++ PTPIQ++ +P+ +SG D++ A+TG+GKTAAF +P+L+R
Sbjct: 5 FEQLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPVLER 64
Query: 85 L---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
+ N+HV + +ILSPTR+LA+Q + ++ +YTD+ + GG + QF L
Sbjct: 65 VDGSNRHV-----QVVILSPTRELAIQVAEELNKMAQYTDITALPIYGGQDINRQFRALK 119
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+NP II+ATPGRLM H+ + + V+ VV DEAD + MGF + ++KILG + E+ Q
Sbjct: 120 KNPQIIVATPGRLMDHMDR-GSIKFEDVKIVVLDEADEMLNMGFVDDINKILGAIPEDHQ 178
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
TLLFSAT+P A+ E A+ L +P L+R+ T+++ DL ++ Q+ + +L + +
Sbjct: 179 TLLFSATMPKAIRELAETYLTEPTLIRMK-PTQVTMDLIEQYYIEVQDRQKFDVLCRLFD 237
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ + + +IF TK V+ + ++ G +GD+ Q R + +FR L+
Sbjct: 238 -LQAPELAIIFTRTKRRVDEVTEALKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILV 296
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TDVAARG+DI + +V N+D P P+ + HRVGR RAG+ G A++FV ++ +L +
Sbjct: 297 ATDVAARGLDISGVSHVYNYDLPQDPESYTHRVGRTGRAGKAGEAYTFVIPREIEHLHAI 356
Query: 382 HLFLSKPI--RAAPSEEEVL 399
+ I R APS EVL
Sbjct: 357 ERLTKRKIAKRRAPSLGEVL 376
>gi|303228490|ref|ZP_07315321.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica
ACS-134-V-Col7a]
gi|302516848|gb|EFL58759.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica
ACS-134-V-Col7a]
Length = 523
Score = 263 bits (672), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 145/380 (38%), Positives = 229/380 (60%), Gaps = 13/380 (3%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE L +S V RA+ G++ PTPIQ++ +P+ +SG D++ A+TG+GKTAAF +P+L+R
Sbjct: 5 FEQLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPVLER 64
Query: 85 L---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
+ N+HV + +ILSPTR+LA+Q + ++ +YTD+ + GG + QF L
Sbjct: 65 VDGSNRHV-----QVVILSPTRELAIQVAEELNKMAQYTDITALPIYGGQDINRQFRALK 119
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+NP II+ATPGRLM H+ + + V+ VV DEAD + MGF + ++KILG + E+ Q
Sbjct: 120 KNPQIIVATPGRLMDHMDR-GSIKFEDVKIVVLDEADEMLNMGFVDDINKILGAIPEDHQ 178
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
TLLFSAT+P A+ E A+ L +P L+R+ T+++ DL ++ Q+ + +L + +
Sbjct: 179 TLLFSATMPKAIRELAETYLTEPTLIRMK-PTQVTMDLIEQYYIEVQDRQKFDVLCRLFD 237
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ + + +IF TK V+ + ++ G +GD+ Q R + +FR L+
Sbjct: 238 -LQAPELAIIFTRTKRRVDEVTEALKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILV 296
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TDVAARG+DI + +V N+D P P+ + HRVGR RAG+ G A++FV ++ +L +
Sbjct: 297 ATDVAARGLDISGVSHVYNYDLPQDPESYTHRVGRTGRAGKAGEAYTFVIPREIEHLHAI 356
Query: 382 HLFLSKPI--RAAPSEEEVL 399
+ I R APS EVL
Sbjct: 357 ERLTKRKIAKRRAPSLGEVL 376
>gi|429760884|ref|ZP_19293342.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica KON]
gi|429176588|gb|EKY17963.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica KON]
Length = 523
Score = 263 bits (672), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 145/380 (38%), Positives = 229/380 (60%), Gaps = 13/380 (3%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE L +S V RA+ G++ PTPIQ++ +P+ +SG D++ A+TG+GKTAAF +P+L+R
Sbjct: 5 FEQLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPVLER 64
Query: 85 L---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
+ N+HV + +ILSPTR+LA+Q + ++ +YTD+ + GG + QF L
Sbjct: 65 VDGSNRHV-----QVVILSPTRELAIQVAEELNKMAQYTDITALPIYGGQDINRQFRALK 119
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+NP II+ATPGRLM H+ + + V+ VV DEAD + MGF + ++KILG + E+ Q
Sbjct: 120 KNPQIIVATPGRLMDHMDR-GSIKFEDVKIVVLDEADEMLNMGFVDDINKILGAIPEDHQ 178
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
TLLFSAT+P A+ E A+ L +P L+R+ T+++ DL ++ Q+ + +L + +
Sbjct: 179 TLLFSATMPKAIRELAETYLTEPTLIRMK-PTQVTMDLIEQYYIEVQDRQKFDVLCRLFD 237
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ + + +IF TK V+ + ++ G +GD+ Q R + +FR L+
Sbjct: 238 -LQAPELAIIFTRTKRRVDEVTEALKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILV 296
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TDVAARG+DI + +V N+D P P+ + HRVGR RAG+ G A++FV ++ +L +
Sbjct: 297 ATDVAARGLDISGVSHVYNYDLPQDPESYTHRVGRTGRAGKAGEAYTFVIPREIEHLHAI 356
Query: 382 HLFLSKPI--RAAPSEEEVL 399
+ I R APS EVL
Sbjct: 357 ERLTKRKIAKRRAPSLGEVL 376
>gi|152013519|sp|A4QYM6.1|DRS1_MAGO7 RecName: Full=ATP-dependent RNA helicase DRS1
gi|440472865|gb|ELQ41697.1| ATP-dependent RNA helicase drs-1 [Magnaporthe oryzae Y34]
gi|440482949|gb|ELQ63394.1| ATP-dependent RNA helicase drs-1 [Magnaporthe oryzae P131]
Length = 790
Score = 263 bits (671), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 145/356 (40%), Positives = 213/356 (59%), Gaps = 10/356 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+S++LS + R + G+ PTPIQ KT+P+ L G DVV A TGSGKTAAF+VP+L+R
Sbjct: 257 FQSMSLSRPILRGLTSVGFAKPTPIQSKTIPIALMGKDVVGGAVTGSGKTAAFVVPILER 316
Query: 85 L---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L + VP R +IL+PTR+LA+Q +L +TD++ L VGG S++ Q EL
Sbjct: 317 LLYRPKKVPTS--RVVILAPTRELAIQCHAVATKLASHTDIKFCLAVGGLSLKVQESELR 374
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
PD+IIATPGR + H+ ++ +VE +V DEAD + GFA++L++IL L ++RQ
Sbjct: 375 LRPDVIIATPGRFIDHMRNSASFAVDTVEILVLDEADRMLEDGFADELNEILTTLPKSRQ 434
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTL---RQEEKHAALLYM 258
T+LFSAT+ S++ + GL P + +D K L F L R+E++ L+Y+
Sbjct: 435 TMLFSATMTSSVDNLIRVGLNKPVRLMVDSQKKTVVTLTQEFVRLRPGREEKRMGYLVYL 494
Query: 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
+ + ++ +IF K ++F GL + +G M Q R V FR K
Sbjct: 495 CKNLYT--ERVIIFFRQKKIAHHARIIFGLLGLSCAELHGSMSQIQRIQSVEAFRDGKVS 552
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
FL+ TD+A+RG+DI +D VIN++ P +I+VHRVGR ARAGR+GTA + D
Sbjct: 553 FLLATDLASRGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGRSGTAITLAAEPD 608
>gi|66812836|ref|XP_640597.1| hypothetical protein DDB_G0281711 [Dictyostelium discoideum AX4]
gi|74897154|sp|Q54TJ4.1|DDX27_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx27; AltName:
Full=DEAD box protein 27
gi|60468614|gb|EAL66617.1| hypothetical protein DDB_G0281711 [Dictyostelium discoideum AX4]
Length = 783
Score = 263 bits (671), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 138/360 (38%), Positives = 220/360 (61%), Gaps = 3/360 (0%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE L+LS + +A+++ G+ PTPIQ K +PL L+G D++A A TGSGKTAAFL+P+L+R
Sbjct: 192 FEELHLSRPLLKAVQKLGFSQPTPIQAKAIPLALNGKDILASASTGSGKTAAFLLPVLER 251
Query: 85 L-NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L + +R LIL PTR+LALQ + L +++++ L+VGG S ++Q EL ++
Sbjct: 252 LLFRDSEYRAIRVLILLPTRELALQCQSVMENLAQFSNITSCLIVGGLSNKAQEVELRKS 311
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
PD++IATPGRL+ HL + L +E ++ DEAD L MGF ++++KI+ NRQT+
Sbjct: 312 PDVVIATPGRLIDHLLNAHGIGLDDLEILILDEADRLLDMGFKDEINKIVESCPTNRQTM 371
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQE--EKHAALLYMIRE 261
LFSATL + AK L+ P V++D +++ L+ F ++ + A+L +
Sbjct: 372 LFSATLNDEVKTLAKLSLQQPIRVQVDALMQVTSTLEQEFVKIKPQHLSDRPAILLSLCT 431
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ + T+IF +K V L ++F L+ + +G++ Q+ R + +FR + +L+
Sbjct: 432 RVFNQGGTIIFCRSKKEVHRLRIIFGLSDLKAAELHGNLSQEQRFDSLQQFRDGQVNYLL 491
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
+DVA+RG+DI + VIN++ P ++HRVGR ARAG G + SF+T D L D+
Sbjct: 492 ASDVASRGLDIIGVKTVINYNMPNNMANYIHRVGRTARAGMDGKSCSFITDNDRKLLKDI 551
>gi|291230627|ref|XP_002735268.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 47-like
[Saccoglossus kowalevskii]
Length = 446
Score = 263 bits (671), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 148/386 (38%), Positives = 235/386 (60%), Gaps = 8/386 (2%)
Query: 14 EKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGK 73
+K+ + F+SL L + ++ +K PT IQR+++PL L G DV+ +A TGSGK
Sbjct: 14 QKETTAQEPATFKSLGLVDVLCETCEQLKWKEPTKIQRESIPLALEGKDVIGLAETGSGK 73
Query: 74 TAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSM 133
T AF +P+LQ L +H PQ + ALIL+PTR+LA Q + + LG ++ +++VGG M
Sbjct: 74 TGAFALPILQDLLEH-PQR-LFALILTPTRELAFQISEQFEALGSAIGIKCAVVVGGIDM 131
Query: 134 ESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKIL 193
SQ +LA+ P +++ATPGRL+ HL + +L+SV+Y+V DEAD + M F +L KIL
Sbjct: 132 MSQALQLAKKPHVVVATPGRLVDHLENTKGFNLRSVKYLVMDEADRILNMDFEIELDKIL 191
Query: 194 GQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLA--FFTLRQEEK 251
+ R+T L+SAT+ +A+ +A L++P V+++V+TK KL + + + K
Sbjct: 192 KVIPRERRTYLYSATMTKKVAKLQRASLKNP--VKVEVNTKYQTVEKLLQYYLFIPSKYK 249
Query: 252 HAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSR 311
L+Y++ E + ++F ST ++ + + ++ R GL +G M Q+ R +++
Sbjct: 250 DVYLVYILNEL--AGNSFMVFCSTCNNTQRVALMLRNLGLTAVPLHGQMSQNKRLGMLNK 307
Query: 312 FRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVT 371
F+ + LI TDVA+RG+DIP +D VIN+D P K ++HRVGR ARAG++G A +FVT
Sbjct: 308 FKGKDRSILIATDVASRGLDIPHVDIVINFDIPTHSKDYIHRVGRTARAGKSGKAITFVT 367
Query: 372 SEDMAYLLDLHLFLSKPIRAAPSEEE 397
D+ + +SK + PSEEE
Sbjct: 368 QYDVELYQRIEQLISKQLPLYPSEEE 393
>gi|294794656|ref|ZP_06759792.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 3_1_44]
gi|294454986|gb|EFG23359.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 3_1_44]
Length = 515
Score = 263 bits (671), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 144/377 (38%), Positives = 228/377 (60%), Gaps = 7/377 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE L +S V RA+ G++ PTPIQ++ +P+ +SG D++ A+TG+GKTAAF +P+L+R
Sbjct: 5 FEQLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPVLER 64
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
++ + + V+ +ILSPTR+LA+Q + ++ +YT++ + GG + QF L +NP
Sbjct: 65 VDGN--ERHVQVVILSPTRELAIQVAEELNKMAQYTNITALPIYGGQDINRQFRALKKNP 122
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
II+ATPGRLM H+ + V+ VV DEAD + MGF + ++KILG + E+ QTLL
Sbjct: 123 QIIVATPGRLMDHMDR-GSIKFDHVKVVVLDEADEMLNMGFVDDINKILGAIPEDHQTLL 181
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P A+ + A+ L +P L+R+ T+++ DL ++ Q+ + +L + + I
Sbjct: 182 FSATMPKAIQQLAETYLTEPTLIRMK-PTQVTMDLIEQYYIEVQDRQKFDVLCRLFD-IQ 239
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
+ + +IF TK V+ + ++ G +GD+ Q R + +FR L+ TD
Sbjct: 240 TPELAIIFTRTKRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVATD 299
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
VAARG+DI + +V N+D P P+ + HRVGR RAG+ G AF+FV +M +L +
Sbjct: 300 VAARGLDISGVSHVYNYDMPQDPESYTHRVGRTGRAGKAGQAFTFVIPREMEHLHAIERL 359
Query: 385 LSKPI--RAAPSEEEVL 399
+ I R APS EVL
Sbjct: 360 TKRKIARRRAPSLGEVL 376
>gi|282849975|ref|ZP_06259358.1| DEAD/DEAH box helicase [Veillonella parvula ATCC 17745]
gi|294792894|ref|ZP_06758041.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 6_1_27]
gi|282580412|gb|EFB85812.1| DEAD/DEAH box helicase [Veillonella parvula ATCC 17745]
gi|294456793|gb|EFG25156.1| ATP-dependent RNA helicase DeaD [Veillonella sp. 6_1_27]
Length = 515
Score = 263 bits (671), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 144/377 (38%), Positives = 228/377 (60%), Gaps = 7/377 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE L +S V RA+ G++ PTPIQ++ +P+ +SG D++ A+TG+GKTAAF +P+L+R
Sbjct: 5 FEQLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPVLER 64
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
++ + + V+ +ILSPTR+LA+Q + ++ +YT++ + GG + QF L +NP
Sbjct: 65 VDGN--ERHVQVVILSPTRELAIQVAEELNKMAQYTNITALPIYGGQDINRQFRALKKNP 122
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
II+ATPGRLM H+ + V+ VV DEAD + MGF + ++KILG + E+ QTLL
Sbjct: 123 QIIVATPGRLMDHMDR-GSIKFDHVKVVVLDEADEMLNMGFVDDINKILGAIPEDHQTLL 181
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P A+ + A+ L +P L+R+ T+++ DL ++ Q+ + +L + + I
Sbjct: 182 FSATMPKAIQQLAETYLTEPTLIRMK-PTQVTMDLIEQYYIEVQDRQKFDVLCRLFD-IQ 239
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
+ + +IF TK V+ + ++ G +GD+ Q R + +FR L+ TD
Sbjct: 240 TPELAIIFTRTKRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVATD 299
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
VAARG+DI + +V N+D P P+ + HRVGR RAG+ G AF+FV +M +L +
Sbjct: 300 VAARGLDISGVSHVYNYDMPQDPESYTHRVGRTGRAGKAGQAFTFVIPREMEHLHAIERL 359
Query: 385 LSKPI--RAAPSEEEVL 399
+ I R APS EVL
Sbjct: 360 TKRKIARRRAPSLGEVL 376
>gi|317479221|ref|ZP_07938356.1| DEAD/DEAH box helicase [Bacteroides sp. 4_1_36]
gi|316904509|gb|EFV26328.1| DEAD/DEAH box helicase [Bacteroides sp. 4_1_36]
Length = 425
Score = 263 bits (671), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 136/365 (37%), Positives = 221/365 (60%), Gaps = 3/365 (0%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE+LNL + +A++++GY PTPIQ K++P++L G D++ A+TG+GKTAAF +P+LQ+
Sbjct: 3 FENLNLIEPILKALQKEGYSTPTPIQEKSIPILLQGKDLLGCAQTGTGKTAAFSIPILQK 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L + + ++ALIL+PTR+LA+Q + G+YT LR +++ GG + Q +EL +
Sbjct: 63 LYKTDNRKSIKALILTPTRELAIQIGECFSAYGKYTGLRHAVIFGGVGQKPQTDELKRGV 122
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
I++ATPGRL L ++LK++E+ V DEAD + MGF + +IL L RQTL
Sbjct: 123 QILVATPGRL-QDLVNQGFINLKALEFFVLDEADRMLDMGFIHDIRRILKLLPAKRQTLF 181
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P + A + L P V + + + + + + ++EK L+++++
Sbjct: 182 FSATMPPEIETLANSMLTHPEKVEVTPASSTVDTISQSVYFVEKKEKKDLLIHLLKN--P 239
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
+ + LIF TK+ + L + G+ +G+ Q+AR+ ++ F+ + LI TD
Sbjct: 240 AIESVLIFTRTKYGADKLARTLSKSGIRAEAIHGNKSQNARQRALTGFKNHELRVLIATD 299
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
+AARGID+ L +VIN++ P P+ +VHR+GR RAG G A SF SE++ YL D+
Sbjct: 300 IAARGIDVDQLSHVINYELPNIPETYVHRIGRTGRAGHDGIALSFCESEELPYLKDIQKL 359
Query: 385 LSKPI 389
+ K I
Sbjct: 360 IGKSI 364
>gi|95928808|ref|ZP_01311554.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
gi|95135153|gb|EAT16806.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
Length = 426
Score = 263 bits (671), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 141/368 (38%), Positives = 212/368 (57%), Gaps = 6/368 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L LS + RA+ +GY PTPIQ + +P +L+G D++A A+TG+GKTA F +P+LQR
Sbjct: 4 FNDLGLSAELLRAVADQGYSEPTPIQAQAIPAVLNGGDILAAAQTGTGKTAGFTLPVLQR 63
Query: 85 LNQHVPQGG---VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L+ G VRAL+L+PTR+LA Q + G+Y LR +++ GG + Q L
Sbjct: 64 LSDTPVSSGRRPVRALVLTPTRELAAQVGASVADYGKYLPLRSAIVFGGVKINPQISMLR 123
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ DI++ATPGRL+ H+S+ + + L VE ++ DEAD + MGF + K+L L + RQ
Sbjct: 124 KGVDILVATPGRLLDHVSQ-KTVDLSKVEILILDEADRMLDMGFIRDIRKVLALLPKKRQ 182
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
LLFSAT + A + L P L+ + S ++ + + + K L +MI
Sbjct: 183 NLLFSATFSDDIKRLADSLLNTPTLIEVARRNTASEQVEQSVHLIEKSRKRELLSHMIGS 242
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ QQ L+F TK L ++GL+ + +G+ Q AR ++ F+A + L+
Sbjct: 243 Q--NWQQVLVFTRTKRGANRLAQQLEKDGLKSTAIHGNKTQGARTKALADFKAGRARVLV 300
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TD+AARG+DI L NV+N++ P P+ +VHR+GR RAGR G A S V SE+ L D+
Sbjct: 301 ATDIAARGLDIDQLPNVVNYELPDVPEDYVHRIGRTGRAGRDGKAVSLVCSEEKKQLRDI 360
Query: 382 HLFLSKPI 389
L +PI
Sbjct: 361 ERLLKRPI 368
>gi|389630538|ref|XP_003712922.1| ATP-dependent RNA helicase DRS1 [Magnaporthe oryzae 70-15]
gi|351645254|gb|EHA53115.1| ATP-dependent RNA helicase DRS1 [Magnaporthe oryzae 70-15]
Length = 799
Score = 263 bits (671), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 145/356 (40%), Positives = 213/356 (59%), Gaps = 10/356 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+S++LS + R + G+ PTPIQ KT+P+ L G DVV A TGSGKTAAF+VP+L+R
Sbjct: 266 FQSMSLSRPILRGLTSVGFAKPTPIQSKTIPIALMGKDVVGGAVTGSGKTAAFVVPILER 325
Query: 85 L---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L + VP R +IL+PTR+LA+Q +L +TD++ L VGG S++ Q EL
Sbjct: 326 LLYRPKKVPTS--RVVILAPTRELAIQCHAVATKLASHTDIKFCLAVGGLSLKVQESELR 383
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
PD+IIATPGR + H+ ++ +VE +V DEAD + GFA++L++IL L ++RQ
Sbjct: 384 LRPDVIIATPGRFIDHMRNSASFAVDTVEILVLDEADRMLEDGFADELNEILTTLPKSRQ 443
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTL---RQEEKHAALLYM 258
T+LFSAT+ S++ + GL P + +D K L F L R+E++ L+Y+
Sbjct: 444 TMLFSATMTSSVDNLIRVGLNKPVRLMVDSQKKTVVTLTQEFVRLRPGREEKRMGYLVYL 503
Query: 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
+ + ++ +IF K ++F GL + +G M Q R V FR K
Sbjct: 504 CKNLYT--ERVIIFFRQKKIAHHARIIFGLLGLSCAELHGSMSQIQRIQSVEAFRDGKVS 561
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
FL+ TD+A+RG+DI +D VIN++ P +I+VHRVGR ARAGR+GTA + D
Sbjct: 562 FLLATDLASRGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGRSGTAITLAAEPD 617
>gi|342889281|gb|EGU88436.1| hypothetical protein FOXB_01039 [Fusarium oxysporum Fo5176]
Length = 797
Score = 262 bits (670), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 147/366 (40%), Positives = 218/366 (59%), Gaps = 9/366 (2%)
Query: 14 EKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGK 73
E KKS S F++++LS + R + G+ PTPIQ K++P+ L G D+V A TGSGK
Sbjct: 250 EASGKKSASS-FQAMSLSRPILRGLATVGFSKPTPIQAKSIPIALMGKDLVGGAVTGSGK 308
Query: 74 TAAFLVPMLQRL---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGG 130
T AF+VP+L+RL + +P R ++L+PTR+LA+Q +L +TD++ +L VGG
Sbjct: 309 TGAFIVPILERLLYRPKKIPT--TRVVVLTPTRELAIQCHAVATKLAAFTDIKFTLAVGG 366
Query: 131 DSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLH 190
S+++Q EL PD+IIATPGR + H+ S+ +VE +V DEAD + GFA++L+
Sbjct: 367 LSLKAQEVELKLRPDVIIATPGRFIDHMRNSASFSVDTVEIMVLDEADRMLEDGFADELN 426
Query: 191 KILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR--Q 248
+IL L ++RQT+LFSAT+ S + K GL P V +D K L F LR +
Sbjct: 427 EILTTLPKSRQTMLFSATMTSTVDRLIKIGLNKPARVMVDSQKKTVTTLVQEFVRLRPGR 486
Query: 249 EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIH 308
EEK L + +++ ++ +IF K ++F GL + +G M+Q R
Sbjct: 487 EEKRMGYLAHVCKNLYK-ERVIIFFRQKKEAHRARIIFGLLGLSCAELHGSMNQTQRISS 545
Query: 309 VSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFS 368
V FR K +L+ TD+A+RG+DI +D VIN++ P +I+VHRVGR ARAGR GTA +
Sbjct: 546 VEDFRDGKVAYLLATDLASRGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGRKGTALT 605
Query: 369 FVTSED 374
+ D
Sbjct: 606 LASETD 611
>gi|408405797|ref|YP_006863780.1| DEAD/DEAH box helicase [Candidatus Nitrososphaera gargensis Ga9.2]
gi|408366393|gb|AFU60123.1| DEAD-box ATP-dependent RNA helicase [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 454
Score = 262 bits (670), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 137/354 (38%), Positives = 210/354 (59%), Gaps = 6/354 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE L LS + RA+ G++ P PIQ +PL+L G DVV A TG+GKTAAF +P+LQ+
Sbjct: 5 FEELGLSAQLTRALSENGFEAPFPIQEAAIPLVLEGKDVVGQAHTGTGKTAAFGLPILQK 64
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
+ P G ++ALIL+PTR+LA+Q K +YT +R + GG S+ Q ++L Q
Sbjct: 65 IK---PDGPLQALILAPTRELAVQVTTEIKRFAKYTGVRTVAIYGGQSINVQLDKLKQGV 121
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
I++ATPGRL+ H+ + + L V++VV DEAD + MGF + + IL ++E+RQT L
Sbjct: 122 QIVVATPGRLIDHIKQ-GSIILDDVKFVVLDEADRMLDMGFIDDIKFILFYVNEDRQTCL 180
Query: 205 FSATLPSALAEFAKAGLRDPHL--VRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
FSAT+P + A+ ++ + VRL+ + + ++ + + EK L IR++
Sbjct: 181 FSATMPPEILRLAEEYMKRDEIEHVRLNEEEITLDTIDQSYLVVEEREKFKHLCNFIRQN 240
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
S QT++F +TK + + R EG +GD+ Q R + +FR L+
Sbjct: 241 KDSKAQTIVFAATKQRADRIAYNLRREGFSAVTIHGDLSQRQRDNAMHKFRKGTEDILVA 300
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMA 376
TD+AARGID+P + +VIN+D P P ++ HR+GR ARAG G A S V+++ +A
Sbjct: 301 TDIAARGIDVPAVGHVINYDVPDDPNVYFHRIGRTARAGAEGKAISLVSNDRIA 354
>gi|269798436|ref|YP_003312336.1| DEAD/DEAH box helicase [Veillonella parvula DSM 2008]
gi|416998583|ref|ZP_11939344.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella parvula
ACS-068-V-Sch12]
gi|269095065|gb|ACZ25056.1| DEAD/DEAH box helicase domain protein [Veillonella parvula DSM
2008]
gi|333977481|gb|EGL78339.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella parvula
ACS-068-V-Sch12]
Length = 515
Score = 262 bits (670), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 144/377 (38%), Positives = 228/377 (60%), Gaps = 7/377 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE L +S V RA+ G++ PTPIQ++ +P+ +SG D++ A+TG+GKTAAF +P+L+R
Sbjct: 5 FEQLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPVLER 64
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
++ + + V+ +ILSPTR+LA+Q + ++ +YT++ + GG + QF L +NP
Sbjct: 65 VDGN--ERHVQVVILSPTRELAIQVAEELNKMAQYTNITALPIYGGQDINRQFRALKKNP 122
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
II+ATPGRLM H+ + V+ VV DEAD + MGF + ++KILG + E+ QTLL
Sbjct: 123 QIIVATPGRLMDHMDR-GSIHFDHVKVVVLDEADEMLNMGFVDDINKILGAIPEDHQTLL 181
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P A+ + A+ L +P L+R+ T+++ DL ++ Q+ + +L + + I
Sbjct: 182 FSATMPKAIQQLAETYLTEPTLIRMK-PTQVTMDLIEQYYIEVQDRQKFDVLCRLFD-IQ 239
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
+ + +IF TK V+ + ++ G +GD+ Q R + +FR L+ TD
Sbjct: 240 TPELAIIFTRTKRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVATD 299
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
VAARG+DI + +V N+D P P+ + HRVGR RAG+ G AF+FV +M +L +
Sbjct: 300 VAARGLDISGVSHVYNYDMPQDPESYTHRVGRTGRAGKAGQAFTFVIPREMEHLHAIERL 359
Query: 385 LSKPI--RAAPSEEEVL 399
+ I R APS EVL
Sbjct: 360 TKRKIARRRAPSLGEVL 376
>gi|405360716|ref|ZP_11025657.1| ATP-dependent RNA helicase RhlE [Chondromyces apiculatus DSM 436]
gi|397090405|gb|EJJ21269.1| ATP-dependent RNA helicase RhlE [Myxococcus sp. (contaminant ex DSM
436)]
Length = 503
Score = 262 bits (669), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 140/360 (38%), Positives = 215/360 (59%), Gaps = 6/360 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L L + RA+K +GY PTPIQ+K +P L+G DV+ +A+TG+GKTAAF +P+LQR
Sbjct: 3 FDELQLQETLLRAVKAEGYTTPTPIQQKAIPHALAGKDVLGVAQTGTGKTAAFALPILQR 62
Query: 85 LNQHVPQGG---VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L+ P GG VR L+L+PTR+LA Q + G+ LR +++ GG Q + L
Sbjct: 63 LSAKAPPGGARPVRCLVLTPTRELAGQVGESFATYGKNLPLRHTVIFGGVGQNPQVQALQ 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ D+++ATPGRL+ L E +SL+S+E V DEAD + MGF + +++ L RQ
Sbjct: 123 RGVDVLVATPGRLLD-LMEQGCVSLRSLEVFVLDEADRMLDMGFIHDVRRVIKALPSKRQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
TL FSATLP + + A++ L DP V + + + + + + +E+K L ++++E
Sbjct: 182 TLFFSATLPPDIVDLARSILTDPVRVEVTPASSTAETVSQQVYFVEREQKRGLLTHLLKE 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ + L+F TKH + G+ + +G+ Q+AR+ + FR+ L+
Sbjct: 242 --GNISRALVFTRTKHGANRVAKQLEGAGVSSAAIHGNKSQNARERALDEFRSGTLRVLV 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TD+AARGIDI L V+N+D P P+ +VHR+GR RAG +GTA SF +E+ AYL D+
Sbjct: 300 ATDIAARGIDIDGLSYVVNYDLPNVPEQYVHRIGRTGRAGASGTAVSFCDAEERAYLRDI 359
>gi|346978651|gb|EGY22103.1| ATP-dependent rRNA helicase rrp-3 [Verticillium dahliae VdLs.17]
Length = 486
Score = 262 bits (669), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 146/378 (38%), Positives = 221/378 (58%), Gaps = 6/378 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L + ++ A + GYK PTPIQ K++PL L G DV+ +A TGSGKTAAF +P+LQ
Sbjct: 63 FADLGVVESLVEATEALGYKHPTPIQEKSIPLALEGRDVIGLAETGSGKTAAFALPVLQA 122
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L + G+ A++++PTR+LA Q + + LG +LR +++VGG M Q L + P
Sbjct: 123 LLEK--PSGLFAVVMAPTRELAAQIAQTFEALGSLINLRCAVIVGGLDMVQQAIALGKKP 180
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
+++ATPGRL+ HL + + SL+S++Y+V DEAD L M F + KIL + R T L
Sbjct: 181 HVVVATPGRLLDHLEKTKGFSLRSLKYLVLDEADRLLDMDFGPSIDKILKFIPRERHTYL 240
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVD-TKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
FSAT+ S + +A L+DP V + + ++ L + + K +++I I
Sbjct: 241 FSATMSSKVESLQRASLKDPARVSVQSNGYQVVSTLLQNYLFIPHALKDVYCVHLINSFI 300
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
Q T++F+ T H + L +L R G +G + Q AR +++FRA L+ T
Sbjct: 301 G--QTTIVFLRTVHDTQRLAILLRTLGFSALPLHGQLSQSARLGALNKFRAGSRDILVAT 358
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHL 383
DVAARG+DIP +D VIN+D P K ++HRVGR ARAG++G A S VT D+ L +
Sbjct: 359 DVAARGLDIPNVDVVINYDLPQDSKTYIHRVGRTARAGKSGRALSLVTQYDLEIWLRIEA 418
Query: 384 FLSKPIRAAPSE-EEVLL 400
+ K + P+E +EV++
Sbjct: 419 SMGKKLDEFPTEKDEVMV 436
>gi|154284444|ref|XP_001543017.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus NAm1]
gi|160358658|sp|A6QRQ7.1|RRP3_AJECN RecName: Full=ATP-dependent rRNA helicase RRP3
gi|150406658|gb|EDN02199.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus NAm1]
Length = 485
Score = 262 bits (669), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 159/422 (37%), Positives = 240/422 (56%), Gaps = 17/422 (4%)
Query: 16 QKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTA 75
Q++++ + F+ L + ++ A + GYK PTPIQ +++PL L G D++ +A TGSGKTA
Sbjct: 52 QREEAVTKSFKDLGIIDSLCEACEALGYKSPTPIQAESIPLALQGRDLIGLAETGSGKTA 111
Query: 76 AFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMES 135
AF +P+LQ L + PQ + LIL+PTR+LA Q + + LG +R +++VGG M S
Sbjct: 112 AFALPILQAL-MNKPQS-LFGLILAPTRELACQISEAFEALGSLISVRCAVIVGGMDMVS 169
Query: 136 QFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQ 195
Q L + P II+ATPGRL+ HL + SL+S++Y+V DEAD L + F L KIL
Sbjct: 170 QAISLGKKPHIIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKV 229
Query: 196 LSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVD-TKISPDLKLAFFTLRQEEKHAA 254
L R+T LFSAT+ S + +A L +P V + + + L ++ + + K
Sbjct: 230 LPRERRTYLFSATMSSKVESLQRASLSNPLRVSISSNKYQTVATLLQSYLFIPHKYKDIY 289
Query: 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRA 314
L+Y++ E+ + Q ++F T + + L +L R G +G + Q +R +S+FR+
Sbjct: 290 LVYLLNEY--AGQSAIVFTRTVNETQRLAILLRALGFGSIPLHGQLSQSSRLGALSKFRS 347
Query: 315 RKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
R L+ TDVAARG+DIP +D V+N+D P K ++HRVGR ARAG++G AFS VT D
Sbjct: 348 RSRDILVATDVAARGLDIPSVDVVLNFDLPSDSKTYIHRVGRTARAGKSGHAFSIVTQYD 407
Query: 375 MAYLLDLHLFLSKPIRAAPSE-EEVLLDMDGVMSKIDQAI-----------ANGETIYGR 422
+ L + L K + E EEV++ D V AI + G T+ GR
Sbjct: 408 IEVWLRIENALGKKLDEYKVEKEEVMVLSDRVGEAQRHAITEMKDLHEKRGSRGATLKGR 467
Query: 423 FP 424
P
Sbjct: 468 RP 469
>gi|340518289|gb|EGR48530.1| predicted protein [Trichoderma reesei QM6a]
Length = 787
Score = 262 bits (669), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 146/367 (39%), Positives = 218/367 (59%), Gaps = 8/367 (2%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
+ K +K F++++LS + R I G+ PTPIQ KT+P+ L G D+V A TGSG
Sbjct: 241 KPKPGQKVDVSSFQAMSLSRPILRGITTVGFTKPTPIQAKTIPIALMGKDLVGGAVTGSG 300
Query: 73 KTAAFLVPMLQRL---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVG 129
KTAAF++P+L+RL + +P R +IL+PTR+LA+Q +L +TD++ +L VG
Sbjct: 301 KTAAFVLPILERLLYRPKKIPT--TRVVILTPTRELAIQCHAVATKLAAHTDIKFTLAVG 358
Query: 130 GDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQL 189
G S+++Q EL PD+IIATPGR + H+ S+ +VE +V DEAD + GFA++L
Sbjct: 359 GLSLKAQEVELRLRPDVIIATPGRFIDHMRNSASFSVDTVEILVLDEADRMLEDGFADEL 418
Query: 190 HKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR-- 247
++IL L ++RQT+LFSAT+ S + K GL P V +D K + L F LR
Sbjct: 419 NEILTTLPKSRQTMLFSATMTSTVDRLIKVGLNKPVRVMVDSQKKTAGTLTQEFVRLRPG 478
Query: 248 QEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKI 307
+EEK L I +++ + ++ +IF K ++F G + +G M+Q R
Sbjct: 479 REEKRMGYLVHICKNLYT-ERVIIFFRQKKDAHRARIIFGLLGFSCAELHGSMNQTQRIA 537
Query: 308 HVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAF 367
V FR K +L+ TD+A+RG+DI +D VIN++ P +I+VHRVGR ARAGR GT+
Sbjct: 538 SVESFRDGKVNYLLATDLASRGLDIKGVDTVINYEAPQSVEIYVHRVGRTARAGRAGTSV 597
Query: 368 SFVTSED 374
+ D
Sbjct: 598 TLAAEPD 604
>gi|238018738|ref|ZP_04599164.1| hypothetical protein VEIDISOL_00582 [Veillonella dispar ATCC 17748]
gi|237865209|gb|EEP66499.1| hypothetical protein VEIDISOL_00582 [Veillonella dispar ATCC 17748]
Length = 521
Score = 262 bits (669), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 144/377 (38%), Positives = 228/377 (60%), Gaps = 7/377 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE L +S V RA+ G++ PTPIQ++ +P+ +SG D++ A+TG+GKTAAF +P+L+R
Sbjct: 5 FEQLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPVLER 64
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
++ + + V+ +ILSPTR+LA+Q + ++ +YT++ + GG + QF L +NP
Sbjct: 65 VDGN--ERHVQVVILSPTRELAIQVAEELNKMAQYTNITALPIYGGQDINRQFRALKKNP 122
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
II+ATPGRLM H+ + V+ VV DEAD + MGF + ++KILG + E+ QTLL
Sbjct: 123 QIIVATPGRLMDHMDR-GSIHFDHVKVVVLDEADEMLNMGFVDDINKILGAIPEDHQTLL 181
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P A+ + A+ L +P L+R+ T+++ DL ++ Q+ + +L + + I
Sbjct: 182 FSATMPKAIQQLAETYLTEPTLIRMK-PTQVTMDLIEQYYIEVQDRQKFDVLCRLFD-IQ 239
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
+ + +IF TK V+ + ++ G +GD+ Q R + +FR L+ TD
Sbjct: 240 TPELAIIFTRTKRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVATD 299
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
VAARG+DI + +V N+D P P+ + HRVGR RAG+ G AF+FV +M +L +
Sbjct: 300 VAARGLDISGVSHVYNYDMPQDPESYTHRVGRTGRAGKAGQAFTFVIPREMEHLHAIERL 359
Query: 385 LSKPI--RAAPSEEEVL 399
+ I R APS EVL
Sbjct: 360 TKRKIARRRAPSLGEVL 376
>gi|195621064|gb|ACG32362.1| ATP-dependent RNA helicase DDX47 [Zea mays]
Length = 455
Score = 262 bits (669), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 147/396 (37%), Positives = 223/396 (56%), Gaps = 5/396 (1%)
Query: 14 EKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGK 73
E++ ++ F L + + A G+K PT IQ + +P L G D++A+A+TGSGK
Sbjct: 15 EQEXAARQASTFAELGICAELVEACDAMGWKEPTRIQAEAIPHALQGKDLIALAQTGSGK 74
Query: 74 TAAFLVPMLQRL--NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGD 131
T AF +P+LQ L N+ Q A +LSPTR+LA+Q + + LG LR S+LVGG
Sbjct: 75 TGAFALPILQELLSNRQAEQS-FFACVLSPTRELAIQIAEQFEALGSAIGLRCSVLVGGV 133
Query: 132 SMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHK 191
Q + + P I++ TPGRL+ HL+E + SLK ++Y+V DEAD L + F + L
Sbjct: 134 DRVQQVLSIGKRPHIVVGTPGRLLDHLTETKGFSLKKIKYLVLDEADKLLNVEFEKSLDD 193
Query: 192 ILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEK 251
IL ++ ++R+T LFSAT+ + + +A LR+P V + LK F+ + ++K
Sbjct: 194 ILSEMPKDRRTFLFSATMTKKVNKLQRACLRNPAKVEVSSKYSTVDSLKQEFYFVPADDK 253
Query: 252 HAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSR 311
LL+++ E + S +IFV T L ++ R GL+ G M QD R ++R
Sbjct: 254 DCYLLHVLNERLES--MIMIFVRTCESTRLLALMLRNLGLKAMSISGQMSQDKRLGALNR 311
Query: 312 FRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVT 371
F+A+ LI TDVA+RG+DI +D VIN+D P K +VHRVGR ARAGR+G A S V
Sbjct: 312 FKAKDCNILICTDVASRGLDIQGVDMVINYDIPINSKDYVHRVGRTARAGRSGYAVSLVN 371
Query: 372 SEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMS 407
+ + + + L K I + + +L + G +S
Sbjct: 372 QYEAQWFVLIEQLLGKKIDQCKVDRDEVLILKGPIS 407
>gi|145255454|ref|XP_001398969.1| ATP-dependent rRNA helicase RRP3 [Aspergillus niger CBS 513.88]
gi|143462251|sp|A2RB17.1|RRP3_ASPNC RecName: Full=ATP-dependent rRNA helicase rrp3
gi|134084560|emb|CAK43313.1| unnamed protein product [Aspergillus niger]
Length = 467
Score = 262 bits (669), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 154/381 (40%), Positives = 221/381 (58%), Gaps = 11/381 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L + + A + GYK PTPIQR+++PL L G D++ +A TGSGKTAAF +P+LQ
Sbjct: 50 FKELGIIEQLCEACETMGYKAPTPIQRESIPLALKGRDLIGLAETGSGKTAAFALPILQA 109
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L + PQ L+L+PTR+LA Q K + LG +R ++VGG M SQ L + P
Sbjct: 110 LMEK-PQP-FFGLVLAPTRELAYQISKSFESLGASMGVRSCVIVGGMDMVSQSISLGKKP 167
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
II+ATPGRL+ HL + SL++++Y+V DEAD L M F L KIL L R+T L
Sbjct: 168 HIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDMDFGPLLDKILKVLPRERRTFL 227
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDT---KISPDLKLAFFTLRQEEKHAALLYMIRE 261
FSAT+ S + +A L +P +R+ V T + L ++ + Q+ K L+Y++ E
Sbjct: 228 FSATMSSKVESLQRASLSNP--LRVSVSTSKYQTVSTLLQSYLFIPQKHKDLYLVYLLNE 285
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ Q T+IF T + + L L R G +G + Q AR + +FRAR L+
Sbjct: 286 F--AGQSTIIFTRTVNETQRLAFLLRALGFGAIPLHGQLSQSARLGALGKFRARSRNILV 343
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TDVAARG+DIP +D V+N+D P +VHRVGR ARAG++G A SFV D+ L +
Sbjct: 344 ATDVAARGLDIPSVDVVLNFDLPGDSPSYVHRVGRTARAGKSGLAISFVAQYDVEVWLRI 403
Query: 382 HLFLSKPIRA--APSEEEVLL 400
L K ++ P +E ++L
Sbjct: 404 EGALGKKLKEYDCPKDEVMVL 424
>gi|365905521|ref|ZP_09443280.1| ATP-dependent RNA helicase [Lactobacillus versmoldensis KCTC 3814]
Length = 513
Score = 261 bits (668), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 146/416 (35%), Positives = 235/416 (56%), Gaps = 9/416 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F LNL N+ A+ G++ TPIQ +T+PL+++G DV+ A+TG+GKTAAF +P+L
Sbjct: 3 FSELNLDSNLLSAVDEAGFEETTPIQAQTIPLVMTGDDVIGQAQTGTGKTAAFGLPILDA 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
++ + ++ALI+SPTR+LA+QT + +LGR +R+ + GG + Q L +P
Sbjct: 63 VDTN--SSDIQALIISPTRELAIQTQEELYKLGRNKKVRVQSVYGGSDIRRQIHALKSHP 120
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
I++ TPGR++ H++ + L +V+ VV DEAD + MGF E + IL + + QTLL
Sbjct: 121 SIVVGTPGRILDHINR-HTLKLHNVKTVVLDEADEMLDMGFVEDIESILSNVPHDHQTLL 179
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P + + A + DP +V++ + ++ F R EK + + +
Sbjct: 180 FSATMPKPIMKIADKFMTDPEIVKIKSKELTADNIDQYFVKARDFEKFDLMTRIF--DVQ 237
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
+ LIF TK V+ L + G +GD+ QD R + +F+A K FL+ TD
Sbjct: 238 GPELALIFGRTKRRVDELTRGLQARGYNAEGIHGDLSQDKRTSVLRKFKAGKLDFLVATD 297
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
VAARG+DI + +V N+D P P +VHR+GR RAG++G + +FVT +M+YL +
Sbjct: 298 VAARGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGKSGVSVTFVTPNEMSYLRTIENL 357
Query: 385 LSKPIR--AAPSEEEVLL-DMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVRE 437
K ++ A P+++EVL M V I +A+ + RF +L+++ E
Sbjct: 358 TKKRMKPLAQPTDKEVLTGQMGAVKEDIKSTLAHDSNL-DRFKDAADELLAEYTPE 412
>gi|350630756|gb|EHA19128.1| hypothetical protein ASPNIDRAFT_54204 [Aspergillus niger ATCC 1015]
Length = 467
Score = 261 bits (668), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 154/381 (40%), Positives = 221/381 (58%), Gaps = 11/381 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L + + A + GYK PTPIQR+++PL L G D++ +A TGSGKTAAF +P+LQ
Sbjct: 50 FKELGIIEQLCEACETMGYKAPTPIQRESIPLALQGRDLIGLAETGSGKTAAFALPILQA 109
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L + PQ L+L+PTR+LA Q K + LG +R ++VGG M SQ L + P
Sbjct: 110 LMEK-PQP-FFGLVLAPTRELAYQISKSFESLGASMGVRSCVIVGGMDMVSQSISLGKKP 167
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
II+ATPGRL+ HL + SL++++Y+V DEAD L M F L KIL L R+T L
Sbjct: 168 HIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDMDFGPLLDKILKVLPRERRTFL 227
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDT---KISPDLKLAFFTLRQEEKHAALLYMIRE 261
FSAT+ S + +A L +P +R+ V T + L ++ + Q+ K L+Y++ E
Sbjct: 228 FSATMSSKVESLQRASLSNP--LRVSVSTSKYQTVSTLLQSYLFIPQKHKDLYLVYLLNE 285
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ Q T+IF T + + L L R G +G + Q AR + +FRAR L+
Sbjct: 286 F--AGQSTIIFTRTVNETQRLAFLLRALGFGAIPLHGQLSQSARLGALGKFRARSRNILV 343
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TDVAARG+DIP +D V+N+D P +VHRVGR ARAG++G A SFV D+ L +
Sbjct: 344 ATDVAARGLDIPSVDVVLNFDLPGDSPSYVHRVGRTARAGKSGLAISFVAQYDVEVWLRI 403
Query: 382 HLFLSKPIRA--APSEEEVLL 400
L K ++ P +E ++L
Sbjct: 404 EGALGKKLKEYDCPKDEVMVL 424
>gi|254580545|ref|XP_002496258.1| ZYRO0C14234p [Zygosaccharomyces rouxii]
gi|238939149|emb|CAR27325.1| ZYRO0C14234p [Zygosaccharomyces rouxii]
Length = 494
Score = 261 bits (668), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 152/414 (36%), Positives = 231/414 (55%), Gaps = 10/414 (2%)
Query: 7 KAELKRREKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAM 66
KA+++ E + + F LNL P + A K + PTPIQ + +P L G D++ +
Sbjct: 56 KAKVQEEEPEYQGEDLQSFNDLNLVPELIEACKNLNFDKPTPIQARAIPPALEGRDIIGL 115
Query: 67 ARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISL 126
A+TGSGKTAAF +P+L RL + + A +L+PTR+LA QT + LG +R +
Sbjct: 116 AQTGSGKTAAFAIPILNRLWED--KQPYYACVLAPTRELAQQTKETFDSLGALMGVRSTC 173
Query: 127 LVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFA 186
+VGG +M Q EL + P IIIATPGRLM HL + SL+ + ++V DEAD L M F
Sbjct: 174 IVGGMNMMDQARELMRKPHIIIATPGRLMDHLENTKGFSLRKLRFLVMDEADRLLDMEFG 233
Query: 187 EQLHKILGQL-SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFT 245
L KIL + +++R T LFSAT+ S + + +A L +P + + L
Sbjct: 234 PVLDKILKVIPTQDRTTYLFSATMTSKIDKLQRASLTEPVKCAVSNKYQTVDTLVQTLMV 293
Query: 246 LRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDAR 305
+ K+ L+Y++ E+I + +IF TK + E L+ L + +GD++Q+ R
Sbjct: 294 VPSGLKNTYLIYLLNENIG--KTVIIFTRTKANAERLSALCNLLEFNATALHGDLNQNQR 351
Query: 306 KIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGT 365
+ F+A + L+ TDVAARG+DIP +D VIN+D P K ++HRVGR ARAGR+G
Sbjct: 352 TGALDLFKAGRRSILVATDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGK 411
Query: 366 AFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETI 419
+ S V+ D+ +L + L K + ++EV++ + + K ANGE I
Sbjct: 412 SISLVSQYDLELILRIEEVLGKKLPKENCDKEVVISLRDSVDK-----ANGEVI 460
>gi|332293596|ref|YP_004432205.1| DEAD/DEAH box helicase domain protein [Krokinobacter sp. 4H-3-7-5]
gi|332171682|gb|AEE20937.1| DEAD/DEAH box helicase domain protein [Krokinobacter sp. 4H-3-7-5]
Length = 427
Score = 261 bits (668), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 139/369 (37%), Positives = 218/369 (59%), Gaps = 5/369 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+SL LS + +A+ KGY P+PIQ+K +P++L G DV+A A+TG+GKTA F +PM+ R
Sbjct: 3 FKSLGLSDALLKAVSEKGYTTPSPIQQKAIPVVLQGKDVLASAQTGTGKTAGFTLPMIHR 62
Query: 85 LNQHVPQG--GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
L + QG +RAL+L+PTR+LA Q + E +Y D++ ++ GG + Q L Q
Sbjct: 63 LINNPKQGRRKIRALVLTPTRELAAQIQENVLEYSKYVDIKSMVIFGGVNQNPQVRTLRQ 122
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
DI++ATPGRL+ L +SL VE++V DEAD + MGF + K+L + RQ
Sbjct: 123 GVDILVATPGRLLD-LQNQGLLSLSDVEFLVLDEADRMLDMGFIHDIKKVLKMVPAKRQN 181
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
LLFSAT + + +FA + L +P LV + + + + + + K L+ IRE
Sbjct: 182 LLFSATFNTDIKKFASSILTNPVLVEATPENTTAEKVDQKSYRVDKSRKTEMLIKFIRE- 240
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
+ Q L+F TKH L+ ++G+ + +G+ Q+AR ++ F++ K L+
Sbjct: 241 -GNWDQVLVFTRTKHGANRLSQKLEKDGISSAAIHGNKTQNARVKALAGFKSGKVRVLVA 299
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
TD+AARG+DIPLL VIN++ P P+ +VHR+GR RAG +G A S V +++ Y+ +
Sbjct: 300 TDIAARGLDIPLLPYVINYELPNVPEDYVHRIGRTGRAGASGQAISLVGVDEVDYVRGIE 359
Query: 383 LFLSKPIRA 391
L + + +
Sbjct: 360 KLLGEKLHS 368
>gi|313893137|ref|ZP_07826714.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella sp. oral
taxon 158 str. F0412]
gi|313442490|gb|EFR60905.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella sp. oral
taxon 158 str. F0412]
Length = 523
Score = 261 bits (668), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 144/377 (38%), Positives = 228/377 (60%), Gaps = 7/377 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE L +S V RA+ G++ PTPIQ++ +P+ +SG D++ A+TG+GKTAAF +P+L+R
Sbjct: 5 FEQLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPVLER 64
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
++ + + V+ +ILSPTR+LA+Q + ++ +YT++ + GG + QF L +NP
Sbjct: 65 VDGN--ERHVQVVILSPTRELAIQVAEELNKMAQYTNITALPIYGGQDINRQFRALKKNP 122
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
II+ATPGRLM H+ + V+ VV DEAD + MGF + ++KILG + E+ QTLL
Sbjct: 123 QIIVATPGRLMDHMDR-GSIHFDHVKVVVLDEADEMLNMGFVDDINKILGAIPEDHQTLL 181
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P A+ + A+ L +P L+R+ T+++ DL ++ Q+ + +L + + I
Sbjct: 182 FSATMPKAIQQLAETYLTEPTLIRMK-PTQVTMDLIEQYYIEVQDRQKFDVLCRLFD-IQ 239
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
+ + +IF TK V+ + ++ G +GD+ Q R + +FR L+ TD
Sbjct: 240 TPELAIIFTRTKRRVDEVTEGLKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILVATD 299
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
VAARG+DI + +V N+D P P+ + HRVGR RAG+ G AF+FV +M +L +
Sbjct: 300 VAARGLDISGVSHVYNYDMPQDPESYTHRVGRTGRAGKAGQAFTFVIPREMEHLHAIERL 359
Query: 385 LSKPI--RAAPSEEEVL 399
+ I R APS EVL
Sbjct: 360 TKRKISRRRAPSLGEVL 376
>gi|346978687|gb|EGY22139.1| ATP-dependent RNA helicase DRS1 [Verticillium dahliae VdLs.17]
Length = 748
Score = 261 bits (668), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 145/365 (39%), Positives = 217/365 (59%), Gaps = 8/365 (2%)
Query: 15 KQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKT 74
K KK+ + F++++LS + R + + PTPIQ+KT+P+ L G D+V A TGSGKT
Sbjct: 211 KPGKKAAANSFQAMSLSRPILRGLAGVSFTKPTPIQQKTIPIALMGKDLVGGAVTGSGKT 270
Query: 75 AAFLVPMLQRL---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGD 131
AAF+VP+L+RL + VP R +IL+PTR+LA+Q +L YTD++ +L VGG
Sbjct: 271 AAFVVPILERLLYRPKKVPTS--RVVILTPTRELAIQCHSVATKLAAYTDIKFTLAVGGL 328
Query: 132 SMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHK 191
S++ Q EL PD+IIATPGR + H+ ++ +VE +V DEAD + GFA++L++
Sbjct: 329 SLKMQEAELRLRPDVIIATPGRFIDHMRNSASFAVDAVEILVLDEADRMLEDGFADELNE 388
Query: 192 ILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR--QE 249
IL + ++RQT+LFSAT+ S++ + G+ P V +D K L F LR +E
Sbjct: 389 ILTSMPKSRQTMLFSATMTSSVDRLIRVGMNTPARVMVDSQKKTVTTLTQEFIRLRPGRE 448
Query: 250 EKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHV 309
K L I + + + ++ +IF K ++F GL + +G M+Q R V
Sbjct: 449 SKRMGYLLFICKTLYT-ERVIIFFRQKKDAHRARIIFGLLGLSCAELHGSMNQTQRIQSV 507
Query: 310 SRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSF 369
FR K +L+ TD+A+RG+DI +D VIN++ P K +I+VHRVGR ARAGR G A +
Sbjct: 508 EDFRDGKVSYLLATDLASRGLDIKGIDTVINYEAPQKLEIYVHRVGRTARAGRAGVAVTL 567
Query: 370 VTSED 374
D
Sbjct: 568 AAEPD 572
>gi|375357970|ref|YP_005110742.1| putative ATP-dependent RNA helicase [Bacteroides fragilis 638R]
gi|301162651|emb|CBW22198.1| putative ATP-dependent RNA helicase [Bacteroides fragilis 638R]
Length = 427
Score = 261 bits (668), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 135/365 (36%), Positives = 224/365 (61%), Gaps = 3/365 (0%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE+LNL + +A++++GY PTPIQ +++P++L G D++ A+TG+GKTAAF +P+LQ+
Sbjct: 3 FENLNLIEPILKALRQEGYTSPTPIQEQSIPILLQGKDLLGCAQTGTGKTAAFSIPILQK 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L + + G++AL+L+PTR+LA+Q + + GRYT L+ +++ GG + Q + L
Sbjct: 63 LYKTDHRKGIKALVLTPTRELAIQIGESFEAYGRYTGLKHAVIFGGVGQKPQTDALRSGI 122
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
I++ATPGRL+ +S+ +SL S+++ V DEAD + MGF + +IL L RQTL
Sbjct: 123 QILVATPGRLLDLISQ-GFISLSSLDFFVLDEADRMLDMGFIHDIKRILKLLPARRQTLF 181
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P + A + L P V + + + + + ++EK L++++++ +
Sbjct: 182 FSATMPPEIETLANSMLTKPEKVEVTPASSTVDIISQQVYFVEKKEKKDLLIHLLKD--T 239
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
S + LIF TK+ + L + + G+ +G+ Q+AR+ ++ F+ LI TD
Sbjct: 240 SIESVLIFTRTKYGADKLARVLTKAGIGAEAIHGNKTQNARQRALTNFKNHTLRALIATD 299
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
+AARGID+ L +VIN++ P P+ +VHR+GR RAG G A SF SE++ YL D+
Sbjct: 300 IAARGIDVDQLSHVINYELPNVPETYVHRIGRTGRAGHEGVAISFCESEELPYLKDIQKL 359
Query: 385 LSKPI 389
+ K I
Sbjct: 360 IGKKI 364
>gi|212722850|ref|NP_001131651.1| uncharacterized protein LOC100193011 [Zea mays]
gi|194692160|gb|ACF80164.1| unknown [Zea mays]
gi|413934956|gb|AFW69507.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 455
Score = 261 bits (668), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 147/396 (37%), Positives = 223/396 (56%), Gaps = 5/396 (1%)
Query: 14 EKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGK 73
E++ ++ F L + + A G+K PT IQ + +P L G D++A+A+TGSGK
Sbjct: 15 EQEAAARQASTFAELGICAELVEACDAMGWKEPTRIQAEAIPHALQGKDLIALAQTGSGK 74
Query: 74 TAAFLVPMLQRL--NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGD 131
T AF +P+LQ L N+ Q A +LSPTR+LA+Q + + LG LR S+LVGG
Sbjct: 75 TGAFALPILQELLSNRQAEQS-FFACVLSPTRELAIQIAEQFEALGSAIGLRCSVLVGGV 133
Query: 132 SMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHK 191
Q + + P I++ TPGRL+ HL+E + SLK ++Y+V DEAD L + F + L
Sbjct: 134 DRVQQVLSIGKRPHIVVGTPGRLLDHLTETKGFSLKKIKYLVLDEADKLLNVEFEKSLDD 193
Query: 192 ILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEK 251
IL ++ ++R+T LFSAT+ + + +A LR+P V + LK F+ + ++K
Sbjct: 194 ILSEMPKDRRTFLFSATMTKKVNKLQRACLRNPAKVEVSSKYSTVDSLKQEFYFVPADDK 253
Query: 252 HAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSR 311
LL+++ E + S +IFV T L ++ R GL+ G M QD R ++R
Sbjct: 254 DCYLLHVLNERLES--MIMIFVRTCESTRLLALMLRNLGLKAMSISGQMSQDKRLGALNR 311
Query: 312 FRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVT 371
F+A+ LI TDVA+RG+DI +D VIN+D P K +VHRVGR ARAGR+G A S V
Sbjct: 312 FKAKDCNILICTDVASRGLDIQGVDMVINYDIPMNSKDYVHRVGRTARAGRSGYAVSLVN 371
Query: 372 SEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMS 407
+ + + + L K I + + +L + G +S
Sbjct: 372 QYEAQWFVLIEQLLGKKIDQCKVDRDEVLILKGPIS 407
>gi|392404056|ref|YP_006440668.1| DEAD/DEAH box helicase domain protein [Turneriella parva DSM 21527]
gi|390612010|gb|AFM13162.1| DEAD/DEAH box helicase domain protein [Turneriella parva DSM 21527]
Length = 424
Score = 261 bits (668), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 144/391 (36%), Positives = 234/391 (59%), Gaps = 11/391 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE S + R + R G+K PTPIQ++ +P L+G D++ +A+TG+GKTAAF++PML++
Sbjct: 4 FEKFGFSEAITRNVTRAGFKAPTPIQKEAIPHALAGKDILGLAQTGTGKTAAFVLPMLEK 63
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L+ P +RAL+++PTR+LA Q + LG+ T L+ + GG SM Q EL +
Sbjct: 64 LSAQ-PARKIRALVVAPTRELAEQIHQVIVTLGKDTRLQSMTIYGGASMNRQLGELRKGV 122
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
DI++A PGRL+ HL + ++L +VE +V DEAD +F MGF + +I+ +L + RQT+L
Sbjct: 123 DIVVACPGRLLDHLQR-KSLTLDAVETLVLDEADQMFDMGFLPAIKQIVAKLPQKRQTML 181
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P + + + LR+P V++++ + A + + E K LL+++++ +
Sbjct: 182 FSATMPEEIRKLSAQILREP--VKVELARGPVATISHALYPVTHELKTPLLLHLLKD--A 237
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
DQ L+F TKH L + G + G++ Q+ R ++ F++ K L+ TD
Sbjct: 238 GDQPILVFTKTKHKATRLADQLAKAGFTTASLQGNLSQNRRDSALAGFKSGKYQILVATD 297
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
+AARGID+ + ++IN+D P + ++HR+GR ARA ++G A++FVTSED + ++
Sbjct: 298 IAARGIDVNNISHIINYDIPASSETYIHRIGRTARATKSGDAYTFVTSEDNRQVREIEKA 357
Query: 385 LSKPIRAAPSEEEVLLDMDGVMSKIDQAIAN 415
L KPI E+ L D D + I Q A
Sbjct: 358 LGKPI-----EKRTLKDFDYKGATIAQVAAQ 383
>gi|307352826|ref|YP_003893877.1| DEAD/DEAH box helicase domain-containing protein [Methanoplanus
petrolearius DSM 11571]
gi|307156059|gb|ADN35439.1| DEAD/DEAH box helicase domain protein [Methanoplanus petrolearius
DSM 11571]
Length = 536
Score = 261 bits (668), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 137/355 (38%), Positives = 221/355 (62%), Gaps = 6/355 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F LN+SP + RAI+ G++ PTPIQ++++PLILSG DV A+TG+GKTAAF +P++++
Sbjct: 7 FNELNISPEILRAIEDMGFEEPTPIQQRSIPLILSGRDVTGQAQTGTGKTAAFAIPLIEK 66
Query: 85 LNQHVPQGGVRALILSPTRDLALQ-TLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
+ + V++++LSPTR+L +Q + +F + L D+R+ + GG ++E Q EL +
Sbjct: 67 IEPE--KCSVQSIVLSPTRELTIQISEEFNRLLKYRKDIRVLPVYGGQAIERQLHELKKG 124
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
III TPGR+M H+ +SL ++ VV DEAD + MGF E + +IL + RQT+
Sbjct: 125 VHIIIGTPGRVMDHMKR-GTLSLSGIKTVVLDEADQMLEMGFREDMEEILSKAPGERQTI 183
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
LFSAT+P + + +K+ + P V ++ P ++ + +R+++K L +I I
Sbjct: 184 LFSATMPKPILKISKSFQKKPEFVTINPGQLTVPLIEQKYLEVREKDKLEVLCRLI--DI 241
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+S ++IF +TK V+ L+ + R G +GDM Q R +SRFR+ LI T
Sbjct: 242 NSSDLSMIFCNTKKAVDELSEMLRSRGYFAEGLHGDMKQQQRDRVMSRFRSGSIDILIAT 301
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
DVAARGIDI +D V N+D P + ++HR+GR RAG++G +++FV+ +++ L
Sbjct: 302 DVAARGIDIDDIDVVYNYDVPQDVEYYIHRIGRTGRAGKSGMSYTFVSPKEIYKL 356
>gi|53712950|ref|YP_098942.1| ATP-dependent RNA helicase DeaD [Bacteroides fragilis YCH46]
gi|60681162|ref|YP_211306.1| ATP-dependent RNA helicase [Bacteroides fragilis NCTC 9343]
gi|265763047|ref|ZP_06091615.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 2_1_16]
gi|383117799|ref|ZP_09938542.1| hypothetical protein BSHG_0049 [Bacteroides sp. 3_2_5]
gi|423249596|ref|ZP_17230612.1| hypothetical protein HMPREF1066_01622 [Bacteroides fragilis
CL03T00C08]
gi|423256091|ref|ZP_17237019.1| hypothetical protein HMPREF1067_03663 [Bacteroides fragilis
CL03T12C07]
gi|423258064|ref|ZP_17238987.1| hypothetical protein HMPREF1055_01264 [Bacteroides fragilis
CL07T00C01]
gi|423264968|ref|ZP_17243971.1| hypothetical protein HMPREF1056_01658 [Bacteroides fragilis
CL07T12C05]
gi|423268460|ref|ZP_17247432.1| hypothetical protein HMPREF1079_00514 [Bacteroides fragilis
CL05T00C42]
gi|423273980|ref|ZP_17252927.1| hypothetical protein HMPREF1080_01580 [Bacteroides fragilis
CL05T12C13]
gi|423285051|ref|ZP_17263934.1| hypothetical protein HMPREF1204_03472 [Bacteroides fragilis HMW
615]
gi|52215815|dbj|BAD48408.1| ATP-dependent RNA helicase DeaD [Bacteroides fragilis YCH46]
gi|60492596|emb|CAH07368.1| putative ATP-dependent RNA helicase [Bacteroides fragilis NCTC
9343]
gi|251946848|gb|EES87130.1| hypothetical protein BSHG_0049 [Bacteroides sp. 3_2_5]
gi|263255655|gb|EEZ27001.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 2_1_16]
gi|387777510|gb|EIK39607.1| hypothetical protein HMPREF1055_01264 [Bacteroides fragilis
CL07T00C01]
gi|392649282|gb|EIY42960.1| hypothetical protein HMPREF1067_03663 [Bacteroides fragilis
CL03T12C07]
gi|392655681|gb|EIY49323.1| hypothetical protein HMPREF1066_01622 [Bacteroides fragilis
CL03T00C08]
gi|392703744|gb|EIY96885.1| hypothetical protein HMPREF1079_00514 [Bacteroides fragilis
CL05T00C42]
gi|392704701|gb|EIY97836.1| hypothetical protein HMPREF1056_01658 [Bacteroides fragilis
CL07T12C05]
gi|392707413|gb|EIZ00532.1| hypothetical protein HMPREF1080_01580 [Bacteroides fragilis
CL05T12C13]
gi|404579640|gb|EKA84354.1| hypothetical protein HMPREF1204_03472 [Bacteroides fragilis HMW
615]
Length = 427
Score = 261 bits (668), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 135/365 (36%), Positives = 224/365 (61%), Gaps = 3/365 (0%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE+LNL + +A++++GY PTPIQ +++P++L G D++ A+TG+GKTAAF +P+LQ+
Sbjct: 3 FENLNLIEPILKALRQEGYTSPTPIQEQSIPILLQGKDLLGCAQTGTGKTAAFSIPILQK 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L + + G++AL+L+PTR+LA+Q + + GRYT L+ +++ GG + Q + L
Sbjct: 63 LYKTDHRKGIKALVLTPTRELAIQIGESFEAYGRYTGLKHAVIFGGVGQKPQTDALRSGI 122
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
I++ATPGRL+ +S+ +SL S+++ V DEAD + MGF + +IL L RQTL
Sbjct: 123 QILVATPGRLLDLISQ-GFISLSSLDFFVLDEADRMLDMGFIHDIKRILKLLPARRQTLF 181
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P + A + L P V + + + + + ++EK L++++++ +
Sbjct: 182 FSATMPPEIETLANSMLTKPEKVEVTPASSTVDIISQQVYFVEKKEKKDLLIHLLKD--T 239
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
S + LIF TK+ + L + + G+ +G+ Q+AR+ ++ F+ LI TD
Sbjct: 240 SIESVLIFTRTKYGADKLARVLTKAGIGAEAIHGNKTQNARQRALTNFKNHTLRALIATD 299
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
+AARGID+ L +VIN++ P P+ +VHR+GR RAG G A SF SE++ YL D+
Sbjct: 300 IAARGIDVDQLSHVINYELPNVPETYVHRIGRTGRAGHEGVAISFCESEELPYLKDIQKL 359
Query: 385 LSKPI 389
+ K I
Sbjct: 360 IGKNI 364
>gi|313146179|ref|ZP_07808372.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
gi|423279249|ref|ZP_17258162.1| hypothetical protein HMPREF1203_02379 [Bacteroides fragilis HMW
610]
gi|313134946|gb|EFR52306.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
gi|404585418|gb|EKA90034.1| hypothetical protein HMPREF1203_02379 [Bacteroides fragilis HMW
610]
Length = 427
Score = 261 bits (667), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 135/365 (36%), Positives = 224/365 (61%), Gaps = 3/365 (0%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE+LNL + +A++++GY PTPIQ +++P++L G D++ A+TG+GKTAAF +P+LQ+
Sbjct: 3 FENLNLIEPILKALRQEGYTSPTPIQEQSIPILLQGKDLLGCAQTGTGKTAAFSIPILQK 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L + + G++AL+L+PTR+LA+Q + + GRYT L+ +++ GG + Q + L
Sbjct: 63 LYKTDHRKGIKALVLTPTRELAIQIGESFEAYGRYTGLKHAVIFGGVGQKPQTDALRGGI 122
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
I++ATPGRL+ +S+ +SL S+++ V DEAD + MGF + +IL L RQTL
Sbjct: 123 QILVATPGRLLDLISQ-GFVSLNSLDFFVLDEADRMLDMGFIHDIKRILKLLPTKRQTLF 181
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P + A + L P V + + + + + ++EK L++++++ +
Sbjct: 182 FSATMPPEIETLANSMLTKPEKVEVTPASSTVDIISQQVYFVEKKEKKDLLIHLLKD--A 239
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
S + LIF TK+ + L + + G+ +G+ Q+AR+ ++ F+ LI TD
Sbjct: 240 SIESVLIFTRTKYGADKLARILTKAGIGAEAIHGNKTQNARQRALTNFKNHTLRALIATD 299
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
+AARGID+ L +VIN++ P P+ +VHR+GR RAG G A SF SE++ YL D+
Sbjct: 300 IAARGIDVDQLSHVINYELPNVPETYVHRIGRTGRAGHEGVAISFCESEELPYLKDIQKL 359
Query: 385 LSKPI 389
+ K I
Sbjct: 360 IGKNI 364
>gi|429085612|ref|ZP_19148582.1| ATP-dependent RNA helicase RhlE [Cronobacter condimenti 1330]
gi|426545220|emb|CCJ74623.1| ATP-dependent RNA helicase RhlE [Cronobacter condimenti 1330]
Length = 474
Score = 261 bits (667), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 145/368 (39%), Positives = 213/368 (57%), Gaps = 6/368 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+SL LSP + RAI +GY PTPIQR+ +P++LSG D++A A+TG+GKTA F +P+LQR
Sbjct: 3 FDSLGLSPEILRAIAEQGYNEPTPIQRQAIPVVLSGKDLMASAQTGTGKTAGFTLPLLQR 62
Query: 85 LNQHVPQGG---VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L + PQ G VRALIL+PTR+LA Q + +E +Y D+R ++ GG S+ Q +L
Sbjct: 63 LTANEPQKGRRPVRALILTPTRELAAQVGENVREYSKYLDIRSLVVFGGVSINPQMMKLR 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
D++IATPGRL+ L + L VE +V DEAD + MGF + ++L +L RQ
Sbjct: 123 GGVDVLIATPGRLLD-LEHQNAVKLDQVEVLVLDEADRMLDMGFIHDIRRVLAKLPPKRQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
LLFSAT + A+ LR+P V + S + + ++ K L Y+I +
Sbjct: 182 NLLFSATFSDDIKGLAEKLLRNPEEVAVARRNTASGQVTQHVHFVDKKRKRELLSYLIGD 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ QQ L+F TKH L ++G+ + +G+ Q AR ++ F+ L+
Sbjct: 242 --GNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKTGGIRVLV 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TD+AARGIDI L +V+N++ P P+ +VHR+GR RA TG A S V ++ L D+
Sbjct: 300 ATDIAARGIDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI 359
Query: 382 HLFLSKPI 389
L + I
Sbjct: 360 ERVLKREI 367
>gi|225556564|gb|EEH04852.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus G186AR]
Length = 485
Score = 261 bits (667), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 158/422 (37%), Positives = 240/422 (56%), Gaps = 17/422 (4%)
Query: 16 QKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTA 75
Q++++ + F+ L + ++ A + GYK PTPIQ +++PL L G D++ +A TGSGKTA
Sbjct: 52 QREEAVTKSFKDLGIIDSLCEACEALGYKSPTPIQAESIPLALQGRDLIGLAETGSGKTA 111
Query: 76 AFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMES 135
AF +P+LQ L + PQ + LIL+PTR+LA Q + + LG +R +++VGG M S
Sbjct: 112 AFALPILQAL-MNKPQS-LFGLILAPTRELACQISEAFEALGSLISVRCAVIVGGMDMVS 169
Query: 136 QFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQ 195
Q L + P II+ATPGRL+ HL + SL++++Y+V DEAD L + F L KIL
Sbjct: 170 QAISLGKKPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPILDKILKV 229
Query: 196 LSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVD-TKISPDLKLAFFTLRQEEKHAA 254
L R+T LFSAT+ S + +A L +P V + + + L ++ + + K
Sbjct: 230 LPRERRTYLFSATMSSKVESLQRASLSNPLRVSISSNKYQTVATLLQSYLFIPHKYKDVY 289
Query: 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRA 314
L+Y++ E+ + Q ++F T + + L +L R G +G + Q +R +S+FR+
Sbjct: 290 LVYLLNEY--AGQSAIVFTRTVNETQRLAILLRALGFGSIPLHGQLSQSSRLGALSKFRS 347
Query: 315 RKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
R L+ TDVAARG+DIP +D V+N+D P K ++HRVGR ARAG++G AFS VT D
Sbjct: 348 RSRDILVATDVAARGLDIPSVDVVLNFDLPSDSKTYIHRVGRTARAGKSGHAFSIVTQYD 407
Query: 375 MAYLLDLHLFLSKPIRAAPSE-EEVLLDMDGVMSKIDQAI-----------ANGETIYGR 422
+ L + L K + E EEV++ D V AI + G T+ GR
Sbjct: 408 IEVWLRIENALGKKLDEYKVEKEEVMVLSDRVGEAQRHAITEMKDLHEKRGSRGATLKGR 467
Query: 423 FP 424
P
Sbjct: 468 RP 469
>gi|281208721|gb|EFA82896.1| putative RNA helicase [Polysphondylium pallidum PN500]
Length = 803
Score = 261 bits (667), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 151/376 (40%), Positives = 219/376 (58%), Gaps = 9/376 (2%)
Query: 9 ELKRREKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMAR 68
E RR KQ+ + + F+ L+LS + +A+++ G+ +PTPIQ KT+P A
Sbjct: 167 ESNRRRKQEVEEELPTFQELHLSRPLQKAVQKLGFTMPTPIQAKTIP------PSTQCAT 220
Query: 69 TGSGKTAAFLVPMLQRL-NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLL 127
TGSGKTAAFL+P+L+RL + V +R L+L PTR+LALQ + L ++T++ L+
Sbjct: 221 TGSGKTAAFLLPILERLLYRDVDNRAIRVLVLLPTRELALQCQSVLENLAQFTNITSCLV 280
Query: 128 VGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAE 187
VGG S + Q EL + PD++IATPGRL+ HL D+ L +E +V DEAD L MGF +
Sbjct: 281 VGGLSNKVQEVELRKRPDVVIATPGRLIDHLLNAHDVGLDDLEILVLDEADRLLDMGFKD 340
Query: 188 QLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR 247
+L KI+ NRQ+LLFSATL + AK L+ P V +D +++ L+ F +R
Sbjct: 341 ELEKIVESCPANRQSLLFSATLSDEVKTLAKLSLKQPIRVAVDALYQVASTLEQEFVKIR 400
Query: 248 --QEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDAR 305
Q ALL + + + T+IF +K V L ++F GL + +GD+ Q+ R
Sbjct: 401 PTQLGDRPALLLSLASRVFNTGGTIIFFKSKKEVHRLCIIFGLAGLSAAELHGDLSQEQR 460
Query: 306 KIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGT 365
+ FR K FL+ +DVAARG+D+ + VIN++ P ++HRVGR ARAG G
Sbjct: 461 FESLQLFRDGKVQFLLASDVAARGLDVLGVKTVINYNIPRNLAQYIHRVGRTARAGAQGR 520
Query: 366 AFSFVTSEDMAYLLDL 381
A SFVT D L D+
Sbjct: 521 ACSFVTEGDRKILKDI 536
>gi|73540223|ref|YP_294743.1| helicase [Ralstonia eutropha JMP134]
gi|72117636|gb|AAZ59899.1| Helicase, C-terminal:Type III restriction enzyme, res
subunit:DEAD/DEAH box helicase, N-terminal [Ralstonia
eutropha JMP134]
Length = 506
Score = 261 bits (667), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 142/367 (38%), Positives = 207/367 (56%), Gaps = 7/367 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L LS + RA+ +GY PTPIQ + +P IL G D++A A+TG+GKTA F +PMLQ
Sbjct: 3 FSELGLSDKLVRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPMLQL 62
Query: 85 LNQHVPQ----GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
L++ PQ VRAL+L+PTR+LA Q + + G+Y LR ++ GG + Q E+L
Sbjct: 63 LSESAPQRQGKPAVRALVLTPTRELAAQVEESVRNYGKYVRLRSMVMFGGVGINPQIEQL 122
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
+ +I++ATPGRL+ H+S+ + L SVE +V DEAD + MGF + KIL L R
Sbjct: 123 RRGVEIVVATPGRLLDHVSQ-RTIDLSSVELLVLDEADRMLDMGFIHDIRKILNVLPPKR 181
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
Q LLFSAT + A L +P + + + + + + +E K L +++R
Sbjct: 182 QNLLFSATFSDDIRALADRLLNNPASIEVARRNTTAETVAQRVYPVDRERKRELLAHLVR 241
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
EH Q L+F TKH L ++GL +G+ Q AR +S F+A L
Sbjct: 242 EH--DWHQVLVFTRTKHGANRLAEQLTKDGLSALAIHGNKSQSARTRALSEFKAGTLRLL 299
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLD 380
+ TD+AARGIDI L +V+N+D P P+ +VHR+GR RAG G A S V ++ L D
Sbjct: 300 VATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAEGEAISLVCVDEHGLLRD 359
Query: 381 LHLFLSK 387
+ + +
Sbjct: 360 IERLIKR 366
>gi|325087574|gb|EGC40884.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus H88]
Length = 485
Score = 261 bits (667), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 158/422 (37%), Positives = 240/422 (56%), Gaps = 17/422 (4%)
Query: 16 QKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTA 75
Q++++ + F+ L + ++ A + GYK PTPIQ +++PL L G D++ +A TGSGKTA
Sbjct: 52 QREEAVTKSFKDLGIIDSLCEACEALGYKSPTPIQAESIPLALQGRDLIGLAETGSGKTA 111
Query: 76 AFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMES 135
AF +P+LQ L + PQ + LIL+PTR+LA Q + + LG +R +++VGG M S
Sbjct: 112 AFALPILQAL-MNKPQS-LFGLILAPTRELACQISEAFEALGSLISVRCAVIVGGMDMVS 169
Query: 136 QFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQ 195
Q L + P II+ATPGRL+ HL + SL++++Y+V DEAD L + F L KIL
Sbjct: 170 QAISLGKKPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPILDKILKV 229
Query: 196 LSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVD-TKISPDLKLAFFTLRQEEKHAA 254
L R+T LFSAT+ S + +A L +P V + + + L ++ + + K
Sbjct: 230 LPRERRTYLFSATMSSKVESLQRASLSNPLRVSISSNKYQTVATLLQSYLFIPHKYKDVY 289
Query: 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRA 314
L+Y++ E+ + Q ++F T + + L +L R G +G + Q +R +S+FR+
Sbjct: 290 LVYLLNEY--AGQSAIVFTRTVNETQRLAILLRTLGFGSIPLHGQLSQSSRLGALSKFRS 347
Query: 315 RKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
R L+ TDVAARG+DIP +D V+N+D P K ++HRVGR ARAG++G AFS VT D
Sbjct: 348 RSRDILVATDVAARGLDIPSVDVVLNFDLPSDSKTYIHRVGRTARAGKSGHAFSIVTQYD 407
Query: 375 MAYLLDLHLFLSKPIRAAPSE-EEVLLDMDGVMSKIDQAI-----------ANGETIYGR 422
+ L + L K + E EEV++ D V AI + G T+ GR
Sbjct: 408 IEVWLRIENALGKKLDEYKVEKEEVMVLSDRVGEAQRHAITEMKDLHEKRGSRGATLKGR 467
Query: 423 FP 424
P
Sbjct: 468 RP 469
>gi|424662680|ref|ZP_18099717.1| hypothetical protein HMPREF1205_03066 [Bacteroides fragilis HMW
616]
gi|404576370|gb|EKA81108.1| hypothetical protein HMPREF1205_03066 [Bacteroides fragilis HMW
616]
Length = 427
Score = 261 bits (667), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 135/365 (36%), Positives = 224/365 (61%), Gaps = 3/365 (0%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE+LNL + +A++++GY PTPIQ +++P++L G D++ A+TG+GKTAAF +P+LQ+
Sbjct: 3 FENLNLIEPILKALRQEGYTSPTPIQEQSIPILLQGKDLLGCAQTGTGKTAAFSIPILQK 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L + + G++AL+L+PTR+LA+Q + + GRYT L+ +++ GG + Q + L
Sbjct: 63 LYKTDHRKGIKALVLTPTRELAIQIGESFEAYGRYTGLKHAVIFGGVGQKPQTDALRGGI 122
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
I++ATPGRL+ +S+ +SL S+++ V DEAD + MGF + +IL L RQTL
Sbjct: 123 QILVATPGRLLDLISQ-GFVSLNSLDFFVLDEADRMLDMGFIHDIKRILKLLPTKRQTLF 181
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P + A + L P V + + + + + ++EK L++++++ +
Sbjct: 182 FSATMPPEIETLANSMLTKPEKVEVTPASSTVDIISQQVYFVEKKEKKDLLIHLLKD--A 239
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
S + LIF TK+ + L + + G+ +G+ Q+AR+ ++ F+ LI TD
Sbjct: 240 SIESVLIFTRTKYGADKLARILTKAGIGAEAIHGNKTQNARQRALTNFKNHTLRALIATD 299
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
+AARGID+ L +VIN++ P P+ +VHR+GR RAG G A SF SE++ YL D+
Sbjct: 300 IAARGIDVDQLSHVINYELPNVPETYVHRIGRTGRAGHEGVAISFCESEELPYLKDIQKL 359
Query: 385 LSKPI 389
+ K I
Sbjct: 360 IGKNI 364
>gi|295677616|ref|YP_003606140.1| DEAD/DEAH box helicase [Burkholderia sp. CCGE1002]
gi|295437459|gb|ADG16629.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
Length = 518
Score = 261 bits (667), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 138/369 (37%), Positives = 213/369 (57%), Gaps = 7/369 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+SL LS + RA+ GY PTPIQ + +P +L+G D++A A+TG+GKTA F +P+LQR
Sbjct: 3 FDSLGLSEPLVRAVNELGYTSPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPILQR 62
Query: 85 LNQHVPQGG----VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
LN P G VRALIL+PTR+LA Q + + G+Y L+ +++ GG + Q + L
Sbjct: 63 LNSMAPAAGGKRVVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIDAL 122
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
+ DI++ATPGRL+ H+ + + + L +E +V DEAD + MGF + ++L +L R
Sbjct: 123 KRGVDIVVATPGRLLDHMQQ-KTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPKR 181
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
Q LLFSAT + A + L P L+ + + + + ++ K L ++IR
Sbjct: 182 QNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHLIR 241
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
+H S Q L+F TKH L ++G+ +G+ Q AR ++ F+ L
Sbjct: 242 QH--SWFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKDGTLQVL 299
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLD 380
+ TD+AARGIDI L +V+N+D P P+ +VHR+GR RAG TG A S V +++ L D
Sbjct: 300 VATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLLKD 359
Query: 381 LHLFLSKPI 389
+ + +P+
Sbjct: 360 IEKLIKRPV 368
>gi|303231880|ref|ZP_07318591.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica
ACS-049-V-Sch6]
gi|302513487|gb|EFL55518.1| DEAD-box ATP-dependent RNA helicase CshA [Veillonella atypica
ACS-049-V-Sch6]
Length = 523
Score = 261 bits (667), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 144/380 (37%), Positives = 228/380 (60%), Gaps = 13/380 (3%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE L +S V RA+ G++ PTPIQ++ +P+ +SG D++ A+TG+GKTAAF +P+L+R
Sbjct: 5 FEQLMISEPVLRALNDMGFEEPTPIQQEAIPVAMSGKDMIGQAQTGTGKTAAFGLPVLER 64
Query: 85 L---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
+ N+HV + +ILSPTR+LA+Q + ++ +YTD+ + GG + QF L
Sbjct: 65 VDGSNRHV-----QVVILSPTRELAIQVAEELNKMAQYTDITALPIYGGQDINRQFRALK 119
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+NP II+ATPGRLM H+ + + V+ VV DEAD + MGF + ++KILG + E+ Q
Sbjct: 120 KNPQIIVATPGRLMDHMDR-GSIKFEDVKIVVLDEADEMLNMGFVDDINKILGAIPEDHQ 178
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
TLLFSAT+P + E A+ L +P L+R+ T+++ DL ++ Q+ + +L + +
Sbjct: 179 TLLFSATMPKTIRELAETYLTEPTLIRMK-PTQVTMDLIEQYYIEVQDRQKFDVLCRLFD 237
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ + + +IF TK V+ + ++ G +GD+ Q R + +FR L+
Sbjct: 238 -LQAPELAIIFTRTKRRVDEVTEALKKRGYMAEGIHGDLSQQKRDSVIRQFREGTIDILV 296
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TDVAARG+DI + +V N+D P P+ + HRVGR RAG+ G A++FV ++ +L +
Sbjct: 297 ATDVAARGLDISGVSHVYNYDLPQDPESYTHRVGRTGRAGKAGEAYTFVIPREIEHLHAI 356
Query: 382 HLFLSKPI--RAAPSEEEVL 399
+ I R APS EVL
Sbjct: 357 ERLTKRKIAKRRAPSLGEVL 376
>gi|160888927|ref|ZP_02069930.1| hypothetical protein BACUNI_01347 [Bacteroides uniformis ATCC 8492]
gi|270293944|ref|ZP_06200146.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. D20]
gi|423306019|ref|ZP_17284018.1| hypothetical protein HMPREF1072_02958 [Bacteroides uniformis
CL03T00C23]
gi|423309437|ref|ZP_17287427.1| hypothetical protein HMPREF1073_02177 [Bacteroides uniformis
CL03T12C37]
gi|156861394|gb|EDO54825.1| DEAD/DEAH box helicase [Bacteroides uniformis ATCC 8492]
gi|270275411|gb|EFA21271.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. D20]
gi|392679863|gb|EIY73240.1| hypothetical protein HMPREF1072_02958 [Bacteroides uniformis
CL03T00C23]
gi|392684477|gb|EIY77802.1| hypothetical protein HMPREF1073_02177 [Bacteroides uniformis
CL03T12C37]
Length = 425
Score = 261 bits (666), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 136/365 (37%), Positives = 220/365 (60%), Gaps = 3/365 (0%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE+LNL + +A++ +GY PTPIQ K++P++L G D++ A+TG+GKTAAF +P+LQ+
Sbjct: 3 FENLNLIEPILKALQEEGYSTPTPIQEKSIPILLQGKDLLGCAQTGTGKTAAFSIPILQK 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L + + ++ALIL+PTR+LA+Q + G+YT LR +++ GG + Q +EL +
Sbjct: 63 LYKTDNRKSIKALILTPTRELAIQIGESFSAYGKYTGLRHAVIFGGVGQKPQTDELKRGV 122
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
I++ATPGRL L ++LK++E+ V DEAD + MGF + +IL L RQTL
Sbjct: 123 QILVATPGRL-QDLVNQGFINLKALEFFVLDEADRMLDMGFIHDIRRILKLLPAKRQTLF 181
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P + A + L P V + + + + + + ++EK L+++++
Sbjct: 182 FSATMPPEIETLANSMLTHPEKVEVTPASSTVDTISQSVYFVEKKEKKDLLIHLLKN--P 239
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
+ + LIF TK+ + L + G+ +G+ Q+AR+ ++ F+ + LI TD
Sbjct: 240 AIKSVLIFTRTKYGADKLARTLSKSGIRAEAIHGNKSQNARQRALTGFKNHELRVLIATD 299
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
+AARGID+ L +VIN++ P P+ +VHR+GR RAG G A SF SE++ YL D+
Sbjct: 300 IAARGIDVDQLSHVINYELPNIPETYVHRIGRTGRAGHDGIALSFCESEELPYLKDIQKL 359
Query: 385 LSKPI 389
+ K I
Sbjct: 360 IGKSI 364
>gi|154299696|ref|XP_001550266.1| hypothetical protein BC1G_11474 [Botryotinia fuckeliana B05.10]
Length = 307
Score = 261 bits (666), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 129/215 (60%), Positives = 164/215 (76%), Gaps = 1/215 (0%)
Query: 15 KQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKT 74
K + K GGF+++ L+ ++ +AI RKG+ VPTPIQRKT+PL+L DVV MARTGSGKT
Sbjct: 80 KGQSVKKGGGFQAMGLNSHLLKAISRKGFNVPTPIQRKTIPLVLDNQDVVGMARTGSGKT 139
Query: 75 AAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSME 134
AAF++PM+++L H + G RALI+SP+R+LALQTLK KE GR TDL+ LLVGGDS+E
Sbjct: 140 AAFVIPMIEKLRAHSARVGARALIMSPSRELALQTLKVVKEFGRGTDLKCVLLVGGDSLE 199
Query: 135 SQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILG 194
QF +A NPDI+IATPGR +H E+ + L S++YVVFDEAD LF MGFA QL +IL
Sbjct: 200 EQFGFMAGNPDIVIATPGRFLHLKVEMS-LDLSSMKYVVFDEADRLFEMGFAAQLGEILH 258
Query: 195 QLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRL 229
L +RQTLLFSATLP +L EFA+AGL++P L L
Sbjct: 259 ALPISRQTLLFSATLPKSLVEFARAGLQEPSLTGL 293
>gi|310791457|gb|EFQ26984.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
Length = 772
Score = 261 bits (666), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 147/366 (40%), Positives = 218/366 (59%), Gaps = 9/366 (2%)
Query: 15 KQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKT 74
K KK S F++++LS + R + G+ PTPIQ KT+P+ L G DVV A TGSGKT
Sbjct: 239 KPGKKDTSSSFQAMSLSRPLLRGLAAVGFSKPTPIQAKTIPIALMGKDVVGGAVTGSGKT 298
Query: 75 AAFLVPMLQRL---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGD 131
AF+VP+L+RL + VP R +IL+PTR+LA+Q +L YTD++ +L VGG
Sbjct: 299 GAFVVPILERLLYRPKKVPTS--RVVILTPTRELAIQCHAVATKLAAYTDIKFTLAVGGL 356
Query: 132 SMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHK 191
S+++Q EL PD+IIATPGR + H+ ++ +VE +V DEAD + GFA++L++
Sbjct: 357 SLKAQEVELRLRPDVIIATPGRFIDHMRNSASFNVDTVEILVLDEADRMLEDGFADELNE 416
Query: 192 ILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVD-TKISPDLKLAFFTLR--Q 248
IL L ++RQT+LFSAT+ S++ + + G+ P V +D K L F LR +
Sbjct: 417 ILTTLPKSRQTMLFSATMTSSVDKLVRLGMNKPARVMVDSQKNKTVGTLVQEFVRLRPGR 476
Query: 249 EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIH 308
EEK L I + + + ++ ++F K ++F G+ + +G M+Q R
Sbjct: 477 EEKRMGYLVHICKTMHT-ERVIVFFRQKKEAHRARIIFGLLGMSCAELHGSMNQAQRIAS 535
Query: 309 VSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFS 368
V FR K +L+ TD+A+RG+DI +D VIN++ P +I+VHRVGR ARAGRTG A +
Sbjct: 536 VENFRDGKVNYLLATDLASRGLDIKGVDTVINYEAPQNIEIYVHRVGRTARAGRTGIAIT 595
Query: 369 FVTSED 374
D
Sbjct: 596 LAAEPD 601
>gi|345868604|ref|ZP_08820584.1| DEAD/DEAH box helicase family protein [Bizionia argentinensis
JUB59]
gi|344046912|gb|EGV42556.1| DEAD/DEAH box helicase family protein [Bizionia argentinensis
JUB59]
Length = 413
Score = 261 bits (666), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 147/376 (39%), Positives = 223/376 (59%), Gaps = 10/376 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L L + +AI+ +GYK PT +Q +T+P +L+ DV+A A+TG+GKTAAF +P+LQ
Sbjct: 3 FKDLQLIDPLLKAIEEQGYKQPTGVQLQTIPQVLAKKDVIASAQTGTGKTAAFALPILQL 62
Query: 85 L--NQHVPQGG--VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
L NQ P+GG ++ALI+SPTR+LALQ K GR+T+LR +++ GG S + Q + L
Sbjct: 63 LSKNQEAPRGGKTIKALIVSPTRELALQIGNNFKAYGRHTNLRTTVIFGGISEKPQVDVL 122
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
A+ DI+IATPGRLM L + + ++L +VE +V DEAD + MGF + + I+ +
Sbjct: 123 AKGVDILIATPGRLMD-LEKQDIINLDAVEILVLDEADLMLDMGFIDDVKHIVNLCPAEK 181
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
Q LLFSAT+P + + A L+ P + + + + ++ + + ++ K L+++R
Sbjct: 182 QILLFSATMPFKVEQLANTILKSPERIEVTTTSSAAKNIGQILYYVPKQNKIELCLHLLR 241
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
I LIF TK V+ L + G +GD Q R+ + +F++ L
Sbjct: 242 NEIKG--SILIFRRTKFGVDKLEASLIKNGYNVETIHGDKTQTDRQEALKKFKSGSVNIL 299
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLD 380
I TDVAARGIDI LD VIN+D P P+ ++HR+GR RAG TG A+SF +++ Y+
Sbjct: 300 IATDVAARGIDINELDAVINFDLPNIPETYIHRIGRTGRAGSTGMAYSFCGADEKNYITT 359
Query: 381 LHLFLSKPIRAAPSEE 396
+ L I P EE
Sbjct: 360 IQQLLQIDI---PVEE 372
>gi|320583325|gb|EFW97540.1| ATP-dependent rRNA helicase, putative [Ogataea parapolymorpha DL-1]
Length = 470
Score = 261 bits (666), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 153/413 (37%), Positives = 237/413 (57%), Gaps = 13/413 (3%)
Query: 9 ELKRREKQKKKSKSGG----FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVV 64
E K+ E+Q ++ +S F+ L L P++ AI++ + PTPIQ +++P L G D++
Sbjct: 49 EDKQNEQQSEQDESTKQVTLFKELGLQPDILDAIEKLNFSTPTPIQAQSLPHSLQGRDII 108
Query: 65 AMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRI 124
+A+TGSGKTAAF +P+LQ L + Q A +L+PTR+LA Q + LG LR
Sbjct: 109 GIAQTGSGKTAAFAIPILQALWEA--QTPYFACVLAPTRELAYQIRETFDALGVNMGLRC 166
Query: 125 SLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG 184
S +VGG M Q +EL + P +I+ATPGRLM HL + SLK+++Y+V DEAD L M
Sbjct: 167 STIVGGMDMMEQAKELMRKPHVIVATPGRLMDHLENTKGFSLKALKYLVMDEADRLLDME 226
Query: 185 FAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISP--DLKLA 242
F L +IL + R+T LFSATL S + + +A L DP V++ V+ K S L
Sbjct: 227 FGPVLDRILNIIPRERKTYLFSATLTSKVEKLQRASLIDP--VKIAVNDKYSTVDTLIQT 284
Query: 243 FFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQ 302
+ K+ L+Y++ E++ + ++F T H + + +L R G +G + Q
Sbjct: 285 LMVVPDGYKNTYLIYLLNEYVG--KSVIVFARTCAHAQKVALLARILGFSAIPLHGQLTQ 342
Query: 303 DARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGR 362
R +++F++ L+ TDVAARG+DIP +D V+N+D P K ++HRVGR ARAGR
Sbjct: 343 AQRLGALNKFKSGDKQILVATDVAARGLDIPSVDLVVNYDIPTDSKAYIHRVGRTARAGR 402
Query: 363 TGTAFSFVTSEDMAYLLDLHLFLSKPI-RAAPSEEEVLLDMDGVMSKIDQAIA 414
+G + S VT D+ +L + + + + P++ E+L D V QA++
Sbjct: 403 SGKSVSLVTQYDLELILRIEKVIDMKLPKEVPNKNEILALHDSVDRATAQAVS 455
>gi|380487114|emb|CCF38253.1| DEAD/DEAH box helicase [Colletotrichum higginsianum]
Length = 777
Score = 261 bits (666), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 146/367 (39%), Positives = 216/367 (58%), Gaps = 11/367 (2%)
Query: 15 KQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKT 74
K KK + F++++LS + R + G+ PTPIQ KT+P+ L G DVV A TGSGKT
Sbjct: 244 KPGKKDTASSFQAMSLSRPLLRGLAAVGFSKPTPIQAKTVPIALMGKDVVGGAVTGSGKT 303
Query: 75 AAFLVPMLQRL---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGD 131
AAF+VP+L+RL + VP R +IL+PTR+LA+Q +L YTD++ +L VGG
Sbjct: 304 AAFVVPILERLLYRPKKVPTS--RVVILTPTRELAIQCHAVATKLAAYTDIKFTLAVGGL 361
Query: 132 SMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHK 191
S+++Q EL PD+IIATPGR + H+ ++ +VE +V DEAD + GFA++L++
Sbjct: 362 SLKAQEVELRLRPDVIIATPGRFIDHMRNSASFNVDTVEILVLDEADRMLEDGFADELNE 421
Query: 192 ILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVD-TKISPDLKLAFFTLRQEE 250
IL L ++RQT+LFSAT+ S++ + + G+ P V +D K L F LR
Sbjct: 422 ILTTLPKSRQTMLFSATMTSSVDKLVRVGMNKPARVMVDSQKNKTVGTLVQEFVRLRPGR 481
Query: 251 KHAALLYMIREHISSDQQT---LIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKI 307
+ + Y++ HI T ++F K ++F G+ + +G M+Q R
Sbjct: 482 EDKRMGYLV--HICKTMHTERVIVFFRQKKEAHRARIIFGLLGMSCAELHGSMNQAQRIA 539
Query: 308 HVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAF 367
V FR K +L+ TD+A+RG+DI +D VIN++ P +I+VHRVGR ARAGRTG A
Sbjct: 540 SVENFRDGKVNYLLATDLASRGLDIKGVDTVINYEAPQNIEIYVHRVGRTARAGRTGIAI 599
Query: 368 SFVTSED 374
+ D
Sbjct: 600 TLAAEPD 606
>gi|390566282|ref|ZP_10246715.1| DEAD-box ATP-dependent RNA helicase cshA [Nitrolancetus hollandicus
Lb]
gi|390170465|emb|CCF86060.1| DEAD-box ATP-dependent RNA helicase cshA [Nitrolancetus hollandicus
Lb]
Length = 528
Score = 261 bits (666), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 144/377 (38%), Positives = 219/377 (58%), Gaps = 7/377 (1%)
Query: 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQ 83
GF +L LS + RAI+ G++ PTPIQR+ +PL+L G DV+A A+TG+GKTAAF +P++Q
Sbjct: 3 GFAALGLSEPILRAIEAVGFEEPTPIQRQAIPLMLDGRDVIAQAQTGTGKTAAFALPIIQ 62
Query: 84 RLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
RL Q G +AL+L+PTR+LA+Q + LG++ D+R+ + GG +E Q L
Sbjct: 63 RLKPD--QKGPQALVLAPTRELAVQVAQAFYSLGKFQDIRVLAVYGGQPIERQLRALRFP 120
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
DII+ TPGR+M HL E +S + + VV DEAD + MGF E + IL Q+ RQ
Sbjct: 121 VDIIVGTPGRIMDHLRR-ETLSFEDISMVVLDEADEMLDMGFVEDIEWILDQVPAQRQIA 179
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
LFSAT+P+ + + ++ L+ P + ++ + P + ++ + K AL ++ +
Sbjct: 180 LFSATIPNRIVDLSRRYLQKPVRIAIEPERVTVPLTEQVYYQVVPRAKVEALTRIL--DL 237
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
++ +IF TK V+ L G +GD+ Q R + RFR+ +T LI T
Sbjct: 238 TAPSSAIIFCRTKREVDDLTQKLESLGYPAEALHGDLSQVQRDRVMGRFRSGQTELLIAT 297
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHL 383
DVA+RG+DI + +VIN+D P P+ +VHR+GR RAGR G A + VT + L +
Sbjct: 298 DVASRGLDIEQVSHVINYDIPLDPESYVHRIGRTGRAGRPGVAITLVTPRESRLLRAIER 357
Query: 384 FLSKPI--RAAPSEEEV 398
I R+ P+ EE+
Sbjct: 358 ATGGRIERRSVPTAEEI 374
>gi|46116372|ref|XP_384204.1| hypothetical protein FG04028.1 [Gibberella zeae PH-1]
gi|91207782|sp|Q4IFI0.1|RRP3_GIBZE RecName: Full=ATP-dependent rRNA helicase RRP3
Length = 486
Score = 261 bits (666), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 147/391 (37%), Positives = 231/391 (59%), Gaps = 12/391 (3%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L ++ + A ++ YK PTPIQ K++P+ L G D++ +A TGSGKTAAF +P+LQ
Sbjct: 62 FKDLGVNDALCEACEKLNYKYPTPIQEKSIPVALQGRDIIGLAETGSGKTAAFALPVLQA 121
Query: 85 L-NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L ++ P G L+L+PTR+LA Q + + LG LR +++VGG M Q L +
Sbjct: 122 LLDKPQPLFG---LVLAPTRELATQIGQAFEALGSLISLRCAVIVGGLDMVPQAIALGKK 178
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
P I++ATPGRL+ HL + + SL++++Y++ DEAD L M F + KIL + R+T
Sbjct: 179 PHIVVATPGRLVDHLEKTKGFSLRTLKYLIMDEADRLLDMDFGPSIDKILKFVPRERRTY 238
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVD--TKISPDLKLAFFTLRQEEKHAALLYMIRE 261
LFSAT+ S + +A LRDP V + + +S L+ F + +K L+Y+I E
Sbjct: 239 LFSATISSKIESLQRASLRDPVKVSISSNKYQTVSTLLQNYLF-IPHPQKDVHLIYLINE 297
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
H + Q T++F T + +++L R G +G + Q +R +++FR+ L+
Sbjct: 298 H--AGQSTIVFTRTVWETQRVSILLRTLGFGAIPLHGQLSQSSRLGALNKFRSGTRDILV 355
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TDVAARG+DIP +D V+N+D P K ++HRVGR ARAG++G A S VT D+ L +
Sbjct: 356 ATDVAARGLDIPSVDVVLNYDLPQDSKTYIHRVGRTARAGKSGVAISLVTQYDLEIYLRI 415
Query: 382 HLFLSKPIRAAPSEEEVLLDMDGVMSKIDQA 412
L K + P+E+E ++ S++++A
Sbjct: 416 EAALGKKLAEYPTEKEEVM---AFQSRVEEA 443
>gi|330840963|ref|XP_003292476.1| hypothetical protein DICPUDRAFT_157190 [Dictyostelium purpureum]
gi|325077283|gb|EGC31006.1| hypothetical protein DICPUDRAFT_157190 [Dictyostelium purpureum]
Length = 780
Score = 260 bits (665), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 137/357 (38%), Positives = 218/357 (61%), Gaps = 3/357 (0%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE L+LS + +A+++ G+ PTPIQ KT+PL L+G D++A A TGSGKTAAFL+P+L+R
Sbjct: 184 FEELHLSRPLLKAVQKLGFSQPTPIQAKTIPLALNGKDILASASTGSGKTAAFLLPILER 243
Query: 85 L-NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L + +R L+L PTR+LALQ + L +++++ L+VGG S ++Q EL +
Sbjct: 244 LLFRDSEYRAIRVLVLLPTRELALQCQSVLENLAQFSNITSCLIVGGLSNKAQEVELRKR 303
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
PD++IATPGRL+ HL + L+ +E ++ DEAD L MGF ++++KI+ +RQT+
Sbjct: 304 PDVVIATPGRLIDHLLNAHGIGLEDLEILILDEADRLLDMGFKDEINKIVDSCPTSRQTM 363
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQE--EKHAALLYMIRE 261
LFSATL + AK L+ P V++D +++ L F ++ + A+L +
Sbjct: 364 LFSATLNDEVKTLAKLSLQQPIRVQVDALFQVASTLDQEFVKIKSQHLSDRPAILMSLCT 423
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ + T+IF +K V L ++F L+ + +G++ Q+ R + +FR K +L+
Sbjct: 424 RVFNTGGTIIFCRSKKEVHRLCIIFGLSDLKAAELHGNLSQEQRFDSLQQFRDGKVNYLL 483
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
+DVA+RG+DI + VIN++ P ++HRVGR ARAG G + SF+T D L
Sbjct: 484 ASDVASRGLDIIGVKTVINYNMPNTLAQYIHRVGRTARAGMEGKSCSFITENDRKIL 540
>gi|153809380|ref|ZP_01962048.1| hypothetical protein BACCAC_03694 [Bacteroides caccae ATCC 43185]
gi|423221053|ref|ZP_17207547.1| hypothetical protein HMPREF1061_04320 [Bacteroides caccae
CL03T12C61]
gi|149127966|gb|EDM19188.1| DEAD/DEAH box helicase [Bacteroides caccae ATCC 43185]
gi|392622292|gb|EIY16424.1| hypothetical protein HMPREF1061_04320 [Bacteroides caccae
CL03T12C61]
Length = 375
Score = 260 bits (665), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 133/372 (35%), Positives = 224/372 (60%), Gaps = 7/372 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ LN++ + +AIK KGY VPTPIQ K +P L+ D++ A+TG+GKTA+F +P++Q
Sbjct: 3 FKELNITEPILKAIKEKGYTVPTPIQEKAIPAALAKRDILGCAQTGTGKTASFAIPIIQH 62
Query: 85 LN----QHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
L + V + G++ALIL+PTR+LALQ + + +YT +R ++ GG + Q + L
Sbjct: 63 LQVVSKESVKRQGIKALILTPTRELALQISECIDDYSKYTRVRHGVIFGGVNQRPQVDML 122
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
+ DI++ATPGRL+ +++ + L +++Y V DEAD + MGF + +IL +L + +
Sbjct: 123 RKGIDILVATPGRLLDLMNQ-GHIHLDTIQYFVLDEADRMLDMGFIHDIKRILPKLPKEK 181
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTL FSAT+P + K+ L++P + + + + + + ++EK L+ +++
Sbjct: 182 QTLFFSATMPDTIVTLTKSLLKNPVKIYITPKSSTVDSINQVVYFVEKKEKSQLLISILQ 241
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
+ + DQ LIF TKH+ + + + + G+ +G+ Q AR+ + F++ KT +
Sbjct: 242 K--AEDQSVLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRVM 299
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLD 380
+ TD+A+RGIDI L VIN+D P P+ +VHR+GR RAG TGTA +F + E+ + D
Sbjct: 300 VATDIASRGIDISELPMVINYDLPDVPETYVHRIGRTGRAGNTGTALTFCSQEERKLVND 359
Query: 381 LHLFLSKPIRAA 392
+ K + A
Sbjct: 360 IQKLTGKKLNKA 371
>gi|418530871|ref|ZP_13096791.1| hypothetical protein CTATCC11996_14313 [Comamonas testosteroni ATCC
11996]
gi|371451950|gb|EHN64982.1| hypothetical protein CTATCC11996_14313 [Comamonas testosteroni ATCC
11996]
Length = 609
Score = 260 bits (665), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 137/377 (36%), Positives = 221/377 (58%), Gaps = 9/377 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE LNL+P + +A++ +GY+ PTPIQ + +PL+L+G D++A A+TG+GKTAAF +PMLQR
Sbjct: 3 FEELNLAPAILKAVQEQGYENPTPIQAQAIPLVLAGHDLLAGAQTGTGKTAAFTLPMLQR 62
Query: 85 L-NQHVPQG-----GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138
L N P+ G+R L+L+PTR+LA Q + + +Y D+ +++ GG M+ Q
Sbjct: 63 LANGTAPKNKFGGKGIRTLVLTPTRELAAQVEENLRSYAKYLDITSTVIFGGVGMKPQIA 122
Query: 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198
+ + D+++ATPGRL+ L+ M L +VE ++ DEAD + MGF + K+L + +
Sbjct: 123 RIEKGVDVLVATPGRLLD-LAGQGFMDLSTVEMLILDEADRMLDMGFIHDVKKVLALVPK 181
Query: 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258
++Q+LLFSAT + E A LR+P +++ +K + + +K LL++
Sbjct: 182 DKQSLLFSATFSDEIRELANGLLRNPQSIQVTPRNTTVQRIKQVIHPVGRGKKKQVLLHI 241
Query: 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
I+E+ S Q L+F TK + + G+ +G+ Q AR + F+ +
Sbjct: 242 IQENNWS--QVLVFTRTKFGANNVAEYLTKNGVSAMALHGNKSQSARTQALEGFKTGELR 299
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
L+ TD+AARGIDI L NV+N++ P + +VHR+GR RAGR G A S V ++ ++
Sbjct: 300 ALVATDIAARGIDIDELPNVVNYEIPNISEDYVHRIGRTGRAGREGNAVSLVCMDEEGFM 359
Query: 379 LDLHLFLSKPIRAAPSE 395
+D+ F + I P E
Sbjct: 360 MDIERFTKQEIPVQPIE 376
>gi|308272082|emb|CBX28690.1| ATP-dependent RNA helicase rhlE [uncultured Desulfobacterium sp.]
Length = 398
Score = 260 bits (665), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 139/358 (38%), Positives = 222/358 (62%), Gaps = 7/358 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F++ NL+P++ I G+ PTPIQ K +PL++ G D++ +A+TG+GKTAAF++P+L R
Sbjct: 3 FKTFNLNPDIEAGIADAGFVTPTPIQTKAIPLVMDGQDIMGLAQTGTGKTAAFVLPILHR 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L Q +G VR+LI++PTR+LA Q LG+ T +R + GG ++ +Q ++L +
Sbjct: 63 LIQG-KRGHVRSLIIAPTRELAEQIHDDINTLGKDTRIRSVTVYGGVNINTQIQKLKRGA 121
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
+I++A PGRL+ H++ + + L VE +V DEAD +F MGF + +IL L RQTLL
Sbjct: 122 EIVVACPGRLLDHMTR-KTIDLTRVEVLVIDEADHMFDMGFLPDIRRILKHLPAQRQTLL 180
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P + AK L+DP +++ +T + + A + + Q K A LL ++ EHI+
Sbjct: 181 FSATMPDEIKSLAKDILKDPITIKVS-ETVPADTVSHAHYPVAQHLKTAFLLKLL-EHIN 238
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
S + L+F TKH + L+ + G + G++ Q R+ + FR + L+ TD
Sbjct: 239 S-KSVLVFTRTKHRAKHLDEQLAKAGFRSASLQGNLSQVRRQAALDGFRNGRIQVLVATD 297
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED--MAYLLD 380
+AARGID+ + +VIN+D P P ++HR+GR RA ++G AF+ +TSED M ++D
Sbjct: 298 IAARGIDVCKISHVINYDIPDTPDAYIHRIGRTGRADQSGDAFTLITSEDKKMVNIID 355
>gi|358373394|dbj|GAA89992.1| ATP-dependent RNA helicase [Aspergillus kawachii IFO 4308]
Length = 471
Score = 260 bits (664), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 155/381 (40%), Positives = 221/381 (58%), Gaps = 11/381 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L + + A + GYK PTPIQR+++PL L G D++ +A TGSGKTAAF +P+LQ
Sbjct: 54 FKELGIIEQLCEACETMGYKAPTPIQRESIPLALQGRDLIGLAETGSGKTAAFALPILQA 113
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L + PQ LIL+PTR+LA Q K + LG +R ++VGG M SQ L + P
Sbjct: 114 LMEK-PQP-FFGLILAPTRELAYQISKSFESLGASLGVRSCVIVGGMDMVSQSISLGKKP 171
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
II+ATPGRL+ HL + SL++++Y+V DEAD L M F L KIL L R+T L
Sbjct: 172 HIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDMDFGPLLDKILKVLPRERRTFL 231
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDT---KISPDLKLAFFTLRQEEKHAALLYMIRE 261
FSAT+ S + +A L +P +R+ V T + L ++ + Q+ K L+Y++ E
Sbjct: 232 FSATMSSKVESLQRASLSNP--LRVSVSTSKYQTVSTLLQSYLFIPQKHKDLYLVYLLNE 289
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ Q T+IF T + + L L R G +G + Q AR + +FRAR L+
Sbjct: 290 F--AGQSTIIFTRTVNETQRLAFLLRALGFGAIPLHGQLSQSARLGALGKFRARSRNILV 347
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TDVAARG+DIP +D V+N+D P +VHRVGR ARAG++G A SFV D+ L +
Sbjct: 348 ATDVAARGLDIPSVDVVLNFDLPGDSPSYVHRVGRTARAGKSGLAISFVAQYDVEVWLRI 407
Query: 382 HLFLSKPIRA--APSEEEVLL 400
L K ++ P +E ++L
Sbjct: 408 EGALGKKLKEYDCPKDEVMVL 428
>gi|322692214|gb|EFY84155.1| dependent RNA helicase drs-1 [Metarhizium acridum CQMa 102]
Length = 780
Score = 260 bits (664), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 145/368 (39%), Positives = 215/368 (58%), Gaps = 10/368 (2%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
R+K K F+ ++LS + R + G+ PTPIQ KT+P+ L G D+V A TGSG
Sbjct: 243 RQKSDKIVDLSSFQGMSLSRPILRGLAAVGFTKPTPIQAKTIPIALMGKDLVGGAVTGSG 302
Query: 73 KTAAFLVPMLQRL---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVG 129
KT AF VP+L+RL + +P R ++L+PTR+LA+Q +L RYTD++ SL VG
Sbjct: 303 KTGAFFVPILERLLFRPKKIPT--TRVVVLTPTRELAMQCHDVGTKLARYTDIKFSLAVG 360
Query: 130 GDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQL 189
G S+++Q EL PDII+ATPGR + H+ ++ +VE +V DEAD + GFA++L
Sbjct: 361 GLSLKAQEVELRLRPDIIVATPGRFIDHMRNSASFNVDTVEILVLDEADRMLEDGFADEL 420
Query: 190 HKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTL--- 246
++IL L ++RQT+LFSAT+ S + +AGL P + +D K L F L
Sbjct: 421 NEILTTLPKSRQTMLFSATMTSTVDRLIRAGLNKPVRLMVDSQKKTVTTLVQEFVRLRPG 480
Query: 247 RQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARK 306
R++++ L Y+ + ++ +IF K ++F GL + +G M+Q R
Sbjct: 481 REDKRMGYLAYLCKTFYH--ERVIIFFRQKKEAHRARIIFGLLGLSCAELHGSMNQSQRI 538
Query: 307 IHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTA 366
V FR K +L+ TD+A+RG+DI +D VIN++ P +I+VHRVGR ARAGR GTA
Sbjct: 539 SSVEAFRDGKVSYLLATDLASRGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGRKGTA 598
Query: 367 FSFVTSED 374
+ D
Sbjct: 599 VTLAAEGD 606
>gi|365122316|ref|ZP_09339220.1| hypothetical protein HMPREF1033_02566 [Tannerella sp.
6_1_58FAA_CT1]
gi|363642816|gb|EHL82156.1| hypothetical protein HMPREF1033_02566 [Tannerella sp.
6_1_58FAA_CT1]
Length = 421
Score = 260 bits (664), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 140/368 (38%), Positives = 221/368 (60%), Gaps = 6/368 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE+L L+ V RA++ +GY PTPIQ K +P +L G D++ A+TG+GKTAAF +P++Q
Sbjct: 3 FENLKLTEPVLRALQDEGYITPTPIQAKAIPCVLDGKDLLGCAQTGTGKTAAFSIPIIQN 62
Query: 85 LNQHVPQGG---VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L G VRALIL+PTR+LA Q R+T L+ +++ GG S +SQ E L
Sbjct: 63 LLAEAGGNGRRSVRALILTPTRELAAQIGDNINAYSRHTRLKHTVIFGGVSQKSQVEALR 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ DI++ATPGRL+ +S+ + + L+++ + V DEAD + MGF + KIL L RQ
Sbjct: 123 KGVDILVATPGRLLDLVSQ-KIIDLQTIRFFVLDEADRMLDMGFIHDIKKILLLLPRKRQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
+L FSAT+P+ + + ++ L P ++ + + ++ +++ + +K LL+++++
Sbjct: 182 SLFFSATMPAEIEKLSRQILNHPEMIEVTPASSTVDVIEQHVYSVEKADKSKLLLHLLQD 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ + L+F TKH + + + G++ +G+ Q+AR ++ FR T LI
Sbjct: 242 --KNIESVLVFTRTKHGADKVARILGRSGVKAEAIHGNKSQNARVKALNNFRDHITRVLI 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TD+AA GIDI L +VIN+D P P+ +VHR+GR RAGR+G AFSF SE+ YL D+
Sbjct: 300 ATDIAAWGIDIDHLSHVINYDLPNIPETYVHRIGRTGRAGRSGAAFSFCDSEEKVYLRDI 359
Query: 382 HLFLSKPI 389
K I
Sbjct: 360 EKLTGKHI 367
>gi|348689923|gb|EGZ29737.1| hypothetical protein PHYSODRAFT_309945 [Phytophthora sojae]
Length = 482
Score = 260 bits (664), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 145/383 (37%), Positives = 231/383 (60%), Gaps = 8/383 (2%)
Query: 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPM 81
S F+ L + + AI+ G+ P+ IQ++ +P L+G D++ +A TGSGKT AF++P+
Sbjct: 30 SKSFQELGVDAAICEAIEAVGWSQPSKIQQQAIPHGLAGKDIIGLAETGSGKTGAFVIPI 89
Query: 82 LQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
LQ L ++ PQ + AL+L+PTR+LA Q + + LG L+ + +VGG M Q LA
Sbjct: 90 LQSLLRN-PQR-LYALVLAPTRELAYQIGEQFEALGASIGLKCACVVGGIDMMQQQVALA 147
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ P ++IATPGRL+ HL + SL++++++V DEAD + M F E++++I+ + R
Sbjct: 148 RKPHVVIATPGRLVDHLENTKGFSLRTMKFLVLDEADRMLSMDFEEEINQIVQLMPAERN 207
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKI-SPD-LKLAFFTLRQEEKHAALLYMI 259
T LFSAT+ S + + +A L+DP V++++ K +P+ LK + + + K L Y++
Sbjct: 208 TYLFSATMTSKVRKLQRASLKDP--VKVEITHKFATPETLKQHYLFIPAKFKDCYLAYVL 265
Query: 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319
E + Q LIF ST + + + ++ R G + +G M Q +R +++F+A+
Sbjct: 266 NE--VAGQSVLIFASTCNGTQKVTLMLRNLGFQAICLHGQMPQPSRLGALNKFKAKARNV 323
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLL 379
L+ TDVA+RG+DIP +D VIN+D P K ++HRVGR ARAGR G A SFVT D+
Sbjct: 324 LVCTDVASRGLDIPSVDVVINYDIPTHGKDYIHRVGRTARAGRAGVAISFVTQYDVELYQ 383
Query: 380 DLHLFLSKPIRAAPSEEEVLLDM 402
+ L + A P EEE +L M
Sbjct: 384 RIEHLLGTKLDAYPCEEETVLVM 406
>gi|302917131|ref|XP_003052376.1| hypothetical protein NECHADRAFT_1180 [Nectria haematococca mpVI
77-13-4]
gi|256733315|gb|EEU46663.1| hypothetical protein NECHADRAFT_1180 [Nectria haematococca mpVI
77-13-4]
Length = 768
Score = 260 bits (664), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 144/365 (39%), Positives = 214/365 (58%), Gaps = 8/365 (2%)
Query: 15 KQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKT 74
K KKS F++++LS + R + G+ PTPIQ K++P+ L G D+V A TGSGKT
Sbjct: 247 KPGKKSDMSSFQAMSLSRPILRGLASVGFTKPTPIQSKSIPIALMGKDLVGGAVTGSGKT 306
Query: 75 AAFLVPMLQRL---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGD 131
AF+VP+L+RL + +P R ++L+PTR+LA+Q +L YTD++ +L VGG
Sbjct: 307 GAFIVPILERLLYRPKKIPT--TRVVVLTPTRELAIQCHAVATKLAAYTDIKFTLAVGGL 364
Query: 132 SMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHK 191
S++ Q EL PD+IIATPGR + H+ ++ +VE ++ DEAD + GFA++L++
Sbjct: 365 SLKVQEAELRLRPDVIIATPGRFIDHMRNSASFNVDTVEILILDEADRMLEDGFADELNE 424
Query: 192 ILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR--QE 249
IL L ++RQT+LFSAT+ S + + G+ P V +D K L F LR +E
Sbjct: 425 ILTTLPKSRQTMLFSATMTSTVDRLIRVGMNKPARVMVDSQKKTVGTLVQEFVRLRPGRE 484
Query: 250 EKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHV 309
EK L I + + ++ +IF K ++F GL + +G M+Q R V
Sbjct: 485 EKRMGYLAYICKTLYR-ERVIIFFRQKKEAHRARIIFGLLGLSCAELHGSMNQTQRISSV 543
Query: 310 SRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSF 369
FR K +L+ TD+A+RG+DI +D VIN++ P +I+VHRVGR ARAGR GTA +
Sbjct: 544 EEFRDGKVSYLLATDLASRGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGRKGTAITL 603
Query: 370 VTSED 374
D
Sbjct: 604 AAEPD 608
>gi|408395320|gb|EKJ74502.1| hypothetical protein FPSE_05252 [Fusarium pseudograminearum CS3096]
Length = 487
Score = 260 bits (664), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 148/391 (37%), Positives = 231/391 (59%), Gaps = 12/391 (3%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L ++ + A ++ YK PTPIQ +++P+ L G D++ +A TGSGKTAAF +P+LQ
Sbjct: 62 FKDLGVNDALCEACEKLNYKYPTPIQEQSIPVALQGRDIIGLAETGSGKTAAFALPVLQA 121
Query: 85 L-NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L ++ P G L+L+PTR+LA Q + + LG LR +++VGG M Q L +
Sbjct: 122 LLDKPQPLFG---LVLAPTRELATQIGQAFEALGSLISLRCAVIVGGLDMVPQSIALGKK 178
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
P II+ATPGRL+ HL + + SL++++Y++ DEAD L M F + KIL + R+T
Sbjct: 179 PHIIVATPGRLVDHLEKTKGFSLRTLKYLIMDEADRLLDMDFGPSIDKILKFVPRERRTY 238
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVD--TKISPDLKLAFFTLRQEEKHAALLYMIRE 261
LFSAT+ S + +A LRDP V + + +S L+ F + +K L+Y+I E
Sbjct: 239 LFSATISSKIESLQRASLRDPVKVSISSNKYQTVSTLLQHYLF-IPHPQKDVHLIYLINE 297
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
H + Q T++F T + +++L R G +G + Q +R +++FR+ L+
Sbjct: 298 H--AGQSTIVFTRTVWETQRVSILLRTLGFGAIPLHGQLSQSSRLGALNKFRSGTRDILV 355
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TDVAARG+DIP +D V+N+D P K +VHRVGR ARAG++G A S VT D+ L +
Sbjct: 356 ATDVAARGLDIPSVDVVLNYDLPQDSKTYVHRVGRTARAGKSGVAISLVTQYDLEIYLRI 415
Query: 382 HLFLSKPIRAAPSEEEVLLDMDGVMSKIDQA 412
L K + P+E+E ++ S++++A
Sbjct: 416 EAALGKKLGEYPTEKEEVM---AFQSRVEEA 443
>gi|338535344|ref|YP_004668678.1| putative ATP-dependent RNA helicase RhlE [Myxococcus fulvus HW-1]
gi|337261440|gb|AEI67600.1| putative ATP-dependent RNA helicase RhlE [Myxococcus fulvus HW-1]
Length = 516
Score = 260 bits (664), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 140/360 (38%), Positives = 214/360 (59%), Gaps = 6/360 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L L + RA+K +GY PTPIQ+K +P L+G DV+ +A+TG+GKTAAF +P+LQR
Sbjct: 3 FDELQLHDTLLRAVKAEGYTTPTPIQQKAIPHALTGRDVLGVAQTGTGKTAAFALPILQR 62
Query: 85 LNQHVPQGG---VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L+ P GG VR L+L+PTR+LA Q + G+ LR +++ GG Q + L
Sbjct: 63 LSAKAPAGGARPVRCLVLTPTRELAGQVGDSFQTYGKGLPLRHAVIFGGVGQNPQVQALR 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
D+++ATPGRL+ L E +SL+S+E V DEAD + MGF + +++ L RQ
Sbjct: 123 NGVDVLVATPGRLLD-LMEQGFVSLRSLEVFVLDEADRMLDMGFIHDVRRVIKALPPKRQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
TL FSATLP + + A++ L DP V + + + + + + +E+K L ++++E
Sbjct: 182 TLFFSATLPPDIVDLARSILTDPIRVEVSPASSTAETVSQQVYFVEREQKRGLLTHLLKE 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ + L+F TKH + G+ + +G+ Q+AR+ + FR+ L+
Sbjct: 242 --GNISRALVFTRTKHGANRVAKQLEGAGVSSAAIHGNKSQNARERALDEFRSGTLRVLV 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TD+AARGIDI L V+N+D P P+ +VHR+GR RAG +GTA SF +E+ AYL D+
Sbjct: 300 ATDIAARGIDIDGLSYVVNYDLPNVPEQYVHRIGRTGRAGASGTAVSFCDAEERAYLRDI 359
>gi|118578871|ref|YP_900121.1| DEAD/DEAH box helicase [Pelobacter propionicus DSM 2379]
gi|118501581|gb|ABK98063.1| DEAD/DEAH box helicase domain protein [Pelobacter propionicus DSM
2379]
Length = 454
Score = 260 bits (664), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 143/368 (38%), Positives = 219/368 (59%), Gaps = 10/368 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE LNL+P + +A+ GY PTPIQ++ +P++++G+D++A A+TG+GKTAAF++P LQR
Sbjct: 3 FEELNLTPAILKAVTACGYTTPTPIQQQAIPVVMTGSDLIATAQTGTGKTAAFVLPALQR 62
Query: 85 LN--QHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
L+ VP G R L+L+PTR+LA Q + + GR LR ++GG Q L+
Sbjct: 63 LSTPSSVPGKGPRVLVLTPTRELAGQCIDAARSYGRGARLRCGSILGGMPYREQLRLLSA 122
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
D+I+ATPGRL+ HL E ++L +E +V DEAD + MGF+E + KI+ + RQT
Sbjct: 123 PVDLIVATPGRLLDHL-ERGSIALNRLEMLVLDEADRMLDMGFSEDMEKIVSAAPQERQT 181
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
L+F+AT+ + + + A+ LR+P + L V T S +L + H L H
Sbjct: 182 LMFTATMGTTVLKLAEKMLRNPQRIELAVRTS-SHELIEQRLHVADNLGHKKELL---RH 237
Query: 263 ISSDQ---QTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319
+ SD+ + +IF +TK + L EG + +GDM+Q AR + R R
Sbjct: 238 LVSDKGLTRAIIFSATKRDADELARELSREGHPAAPLHGDMNQFARNKTIERMRKGAIRL 297
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLL 379
L+ TDVAARG+D+ + +VIN+D P + +VHR+GR RAG +G A SFV+ +++YL
Sbjct: 298 LVATDVAARGLDVNGISHVINFDLPRFAEDYVHRIGRTGRAGASGIAISFVSPSELSYLE 357
Query: 380 DLHLFLSK 387
+ F+ K
Sbjct: 358 RIERFIGK 365
>gi|71022233|ref|XP_761347.1| hypothetical protein UM05200.1 [Ustilago maydis 521]
gi|74699940|sp|Q4P3W3.1|DBP10_USTMA RecName: Full=ATP-dependent RNA helicase DBP10
gi|46097655|gb|EAK82888.1| hypothetical protein UM05200.1 [Ustilago maydis 521]
Length = 1154
Score = 260 bits (664), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 131/256 (51%), Positives = 185/256 (72%), Gaps = 18/256 (7%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGA--DVVAMARTGSGKTAAFLVPML 82
F+S+ L P++ R++ +G+ PTPIQR+ +P I+S DVV MARTGSGKT A+L+P++
Sbjct: 146 FQSMGLHPSLLRSLLIRGFTTPTPIQRQAIPAIMSQPPRDVVGMARTGSGKTLAYLIPLI 205
Query: 83 QRLN-QHVPQGGVRALILSPTRDLALQTLKFTKELGRY-------------TDLRISLLV 128
RLN +H P G+++LIL P+R+LA+Q L+ KE+ R +R +++V
Sbjct: 206 NRLNGRHSPTFGIKSLILCPSRELAVQILRVGKEIARGWKADAGEGQDSRGEAIRWAIIV 265
Query: 129 GGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQ 188
GG+S++ QF ++ NPD++IATPGR++H E+ ++ LKSVEYVVFDEAD LF MGFAEQ
Sbjct: 266 GGESLDEQFGIMSNNPDVVIATPGRMLHLTVEM-NLDLKSVEYVVFDEADRLFEMGFAEQ 324
Query: 189 LHKILGQLSENRQTLLFSATLPSALAEFAKAGLR-DPHLVRLDVDTKISPDLKLAFFTLR 247
L ++L +L RQTLLFSATLP L EF KAGL+ +P LVRLD D+KIS DL++AFF+++
Sbjct: 325 LEEMLLRLPPTRQTLLFSATLPKKLVEFTKAGLQANPKLVRLDADSKISADLRMAFFSVK 384
Query: 248 QEEKHAALLYMIREHI 263
EK AALL ++R+ I
Sbjct: 385 PSEKEAALLVLLRDVI 400
Score = 160 bits (405), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 133/219 (60%), Gaps = 6/219 (2%)
Query: 268 QTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAA 327
QT+IF +TKHHVE+L +L G S Y +DQ R I +SRFR + LIVTDVAA
Sbjct: 470 QTIIFCATKHHVEYLLLLLTTTGYACSHIYSSLDQATRGIQMSRFRRGQNSLLIVTDVAA 529
Query: 328 RGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSK 387
RGID+P+L++V+N+DFPP+P+ FVHRVGR ARAGR G A+S T+ ++ YL DL LFL++
Sbjct: 530 RGIDLPVLEHVVNFDFPPQPRTFVHRVGRTARAGRNGWAWSMCTNAELPYLCDLQLFLAR 589
Query: 388 PIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSA---- 443
P+ ++ + L + V S D + I G P+ +DL ++ + + +++
Sbjct: 590 PLVSSHTAIAALANGRDVAS-ADALGLHDSLILGTLPREALDLETEFISSSLTNTSSSTA 648
Query: 444 -DLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREG 481
D +L+ A + Y K+ S+ES RR K++ + G
Sbjct: 649 HDFPALRAVADRAQQKYEKSIAKASQESHRRAKEMVKLG 687
>gi|160880140|ref|YP_001559108.1| DEAD/DEAH box helicase [Clostridium phytofermentans ISDg]
gi|160428806|gb|ABX42369.1| DEAD/DEAH box helicase domain protein [Clostridium phytofermentans
ISDg]
Length = 514
Score = 259 bits (663), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 138/376 (36%), Positives = 222/376 (59%), Gaps = 4/376 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F +NL + +AIK +G+ P+PIQ+KT+PL+L G D++ A+TG+GKTAAF +P+LQ
Sbjct: 3 FNEMNLIKPLLQAIKEEGFIEPSPIQKKTIPLVLEGRDILGCAQTGTGKTAAFALPILQS 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L++ GVRALI++PTR+LA+Q + + G+YT L+ S++ GG Q L
Sbjct: 63 LSKG-EGSGVRALIITPTRELAIQIYESFECFGKYTSLKQSVIYGGVGQSLQVNSLKAGI 121
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
DI+IATPGRL + + ++L ++E V DEAD + MGF + K++ L + RQTLL
Sbjct: 122 DILIATPGRLNDLIGQ-GYITLDAIEMFVLDEADQMLDMGFLNDIKKVIKLLPKTRQTLL 180
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P + A L +P ++++ T ++ + + + + K + L +I+EH
Sbjct: 181 FSATMPKEIESLATNLLNNPEIIKISPVTSTVDSIEQSVYFVDRLNKISLLTSLIKEHKM 240
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
S + L+F TKH + + + ++ +G Q+AR+ +S F+ K L+ TD
Sbjct: 241 S--RVLVFTKTKHGADRVADKLNKAKVKTQAIHGGKGQNARQTALSDFKEGKIKVLVATD 298
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
+AARGIDI L V+N+D P + +I++HR+GR RAG G A + +DM YL ++
Sbjct: 299 IAARGIDISELSYVVNYDIPNQAEIYIHRIGRTGRAGLGGNAINLCNIDDMDYLREIEKH 358
Query: 385 LSKPIRAAPSEEEVLL 400
+ I PS+ +L+
Sbjct: 359 IGMVIPEVPSKWPMLI 374
>gi|148657801|ref|YP_001278006.1| DEAD/DEAH box helicase [Roseiflexus sp. RS-1]
gi|148569911|gb|ABQ92056.1| DEAD/DEAH box helicase domain protein [Roseiflexus sp. RS-1]
Length = 467
Score = 259 bits (663), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 135/366 (36%), Positives = 213/366 (58%), Gaps = 5/366 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+S P + I+ GY PTPIQ + +P L G DV+ +A+TG+GKTAAF++P+LQR
Sbjct: 3 FDSFRFHPQITAGIRDLGYHTPTPIQEQVIPHALDGRDVIGIAQTGTGKTAAFVLPILQR 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L + P+G VRA+I++PTR+LA Q + LG+YT LR L GG + Q + L +
Sbjct: 63 LMRG-PRGRVRAMIVTPTRELAEQIQGVIEALGKYTGLRSVTLYGGVGYQGQIQRLRRGV 121
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
+I + PGRL+ HL E ++L+ ++ ++ DEAD +F MGF + +IL RQT+L
Sbjct: 122 EIAVVCPGRLLDHL-ERGTLTLEHLDMLILDEADQMFDMGFLPDVRRILRLAPAQRQTML 180
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P A+ A+ LR+P +++ +S + A + + + K A L+ ++R +
Sbjct: 181 FSATMPDAIRALAREALREPQTIQIGRSAPVS-TVTHAIYPVAEHLKTALLIELLRH--T 237
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
LIF TKH + L+ G + G+M Q+ R+ + FR+ + L+ TD
Sbjct: 238 DTGSVLIFTRTKHRAQHLSDTLARMGYRATALQGNMSQNRRQAALDGFRSGRYQILVATD 297
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
+AARGID+ + +VIN+D P + + HR+GR RA RTG AF+ VT D + +
Sbjct: 298 IAARGIDVAHISHVINYDMPQTAEAYTHRIGRTGRAARTGDAFTLVTRSDTGMVRAIERL 357
Query: 385 LSKPIR 390
+ +P++
Sbjct: 358 IGEPLK 363
>gi|301119991|ref|XP_002907723.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262106235|gb|EEY64287.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 479
Score = 259 bits (663), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 145/383 (37%), Positives = 229/383 (59%), Gaps = 8/383 (2%)
Query: 20 SKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLV 79
S S F L + + AI+ G+ P+ IQ++ +P L+G D++ +A TGSGKT AF++
Sbjct: 25 SGSASFAELGVDSAICEAIEAVGWSAPSKIQQQAIPHGLAGKDIIGLAETGSGKTGAFVI 84
Query: 80 PMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139
P+LQ L H PQ + AL+L+PTR+LA Q + + LG L+ + +VGG M Q
Sbjct: 85 PILQSL-LHNPQR-LYALVLAPTRELAYQIGEQFEALGASIGLKCACVVGGIDMMQQQVA 142
Query: 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSEN 199
LA+ P ++IATPGRL+ HL + SL++++++V DEAD + M F E++++I+ + +
Sbjct: 143 LARKPHVVIATPGRLVDHLENTKGFSLRTMKFLVLDEADRMLSMDFEEEINQIVQLMPAD 202
Query: 200 RQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKI-SPD-LKLAFFTLRQEEKHAALLY 257
R T LFSAT+ S + + +A L+DP V++++ K +P+ LK + + + K L Y
Sbjct: 203 RNTYLFSATMTSKVRKLQRASLKDP--VKVEITHKFATPETLKQHYLFIPAKFKDCYLAY 260
Query: 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKT 317
++ E + Q LIF ST + + + ++ R G + +G M Q +R +++F+A+
Sbjct: 261 VLNE--VAGQSVLIFASTCNGTQKVTLMLRNLGFQAICLHGQMPQPSRLGALNKFKAKAR 318
Query: 318 MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAY 377
L+ TDVA+RG+DIP +D VIN+D P K ++HRVGR ARAGR G A SFVT D+
Sbjct: 319 NVLVCTDVASRGLDIPSVDVVINYDIPTHGKDYIHRVGRTARAGRAGVAISFVTQYDVEL 378
Query: 378 LLDLHLFLSKPIRAAPSEEEVLL 400
+ L + A EEE +L
Sbjct: 379 YQRIEHLLGTKLDAYSCEEETVL 401
>gi|269838391|ref|YP_003320619.1| DEAD/DEAH box helicase [Sphaerobacter thermophilus DSM 20745]
gi|269787654|gb|ACZ39797.1| DEAD/DEAH box helicase domain protein [Sphaerobacter thermophilus
DSM 20745]
Length = 526
Score = 259 bits (663), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 147/381 (38%), Positives = 221/381 (58%), Gaps = 15/381 (3%)
Query: 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQ 83
GF L LS V +AI G++ PTPIQR+ +PL+LSG D++A A+TG+GKTAAF +P+++
Sbjct: 3 GFADLGLSEPVLKAIDAVGFEEPTPIQREAIPLLLSGRDLIAQAQTGTGKTAAFALPIIE 62
Query: 84 RL--NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
RL N PQ AL+L+PTR+LA+Q + +LGR D R+ + GG +E Q L
Sbjct: 63 RLQPNGRRPQ----ALVLAPTRELAVQVAQTFHQLGRVRDTRVLAVYGGQPIERQLRALR 118
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
++++ TPGR+M H+ E + L +V VV DEAD + MGF E + IL + RQ
Sbjct: 119 HPVEVVVGTPGRVMDHIRR-ETLDLSNVSTVVIDEADEMLDMGFIEDVEWILDHVPAERQ 177
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
T LFSAT+P +A A+ LRDP V ++ + P ++ + + Q K AL ++
Sbjct: 178 TALFSATIPDRVAALARRYLRDPARVAVEPERVTVPQIEQTYVEVVQRAKVEALTRIL-- 235
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ + +IF TK V+ L + G +GD+ Q R ++RFR+ + LI
Sbjct: 236 DMETPPSAIIFCRTKRGVDELTQQLQSLGYAAEALHGDLSQVQRDRVMARFRSGQAELLI 295
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TDVAARG+D+ + +VIN+D P P+ +VHR+GR RAGR G A + VT + L ++
Sbjct: 296 ATDVAARGLDVEGITHVINYDIPGDPESYVHRIGRTGRAGRAGAAITLVTPRERRLLREI 355
Query: 382 H----LFLSKPIRAAPSEEEV 398
+ +++ R P+ EEV
Sbjct: 356 ERATGVRMTR--RGVPTPEEV 374
>gi|333378025|ref|ZP_08469758.1| hypothetical protein HMPREF9456_01353 [Dysgonomonas mossii DSM
22836]
gi|332884045|gb|EGK04325.1| hypothetical protein HMPREF9456_01353 [Dysgonomonas mossii DSM
22836]
Length = 374
Score = 259 bits (663), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 135/361 (37%), Positives = 225/361 (62%), Gaps = 6/361 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F LN+ + +A++ KGY PTPIQ K + L+ D++ +A+TG+GKTAAF +P++Q+
Sbjct: 3 FNELNIIEPILKALEEKGYTTPTPIQEKAIIPALTNRDILGLAQTGTGKTAAFSLPIIQQ 62
Query: 85 LNQHVPQGG---VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L + G +RALIL+PTR+LA+Q + +YT LR ++ GG ++Q +EL
Sbjct: 63 LYLNKVSGKRREIRALILTPTRELAIQINDSLNDYTQYTGLRHCVIYGGVKQKAQTDELK 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
DI++ATPGRL+ +++ ++L S+ + V DEAD + MGF + ++L +L + +Q
Sbjct: 123 TGIDILVATPGRLLDLINQ-GFINLDSIRHFVLDEADRMLDMGFIHDIKRLLPKLPKEKQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
TL FSAT+PS +A +++ LRDP V + + + +K + + ++EK L+ ++++
Sbjct: 182 TLFFSATMPSTIASLSRSILRDPLKVEVTPASSVIDTIKQYLYFVEKQEKKDLLINLLKK 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
Q L+F TKH + + L + G+ +G+ Q+AR+ ++ F+++KT LI
Sbjct: 242 --DKKQSVLVFSRTKHGADKIARLLCKAGIGSEAIHGNKSQNARQRALTNFKSQKTRVLI 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TD+AARGID+ L+ VIN+D P P+ +VHR+GR RAG +GTA +F ++E+ A L D+
Sbjct: 300 ATDIAARGIDVDQLELVINYDLPDVPETYVHRIGRTGRAGNSGTALTFCSAEENAMLNDI 359
Query: 382 H 382
Sbjct: 360 Q 360
>gi|70953527|ref|XP_745859.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56526311|emb|CAH77815.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 1075
Score = 259 bits (663), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 143/391 (36%), Positives = 231/391 (59%), Gaps = 24/391 (6%)
Query: 25 FESLNLSPNVFRAIKRK-GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQ 83
F++L LS + ++I Y PT IQ+ ++P IL+ DV+ +++TGSGK+ +L ++
Sbjct: 138 FQNLGLSKQMCKSISSNLKYNRPTDIQKLSIPKILNKKDVICISKTGSGKSLVYLSTLID 197
Query: 84 RLNQHVPQGGVRALILSPTRDLALQTLKFTKELG-RYTDLRISLLVGGDSMESQFEELAQ 142
L +H G+R LI+ PT++L +Q K K L Y +L+I++++GG S+ QFE L +
Sbjct: 198 MLREHSKFFGIRGLIILPTKELVIQIYKLAKRLCTNYFNLKINIIIGGISLCKQFEILKE 257
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGF---AEQLHKILGQLSEN 199
N DI+I TPGRL + L E + +SL+ VE +V DEAD L + + ++K LG + N
Sbjct: 258 NIDILICTPGRLSYILDETK-LSLEKVEVIVIDEADRLLELNYYNDMNNIYKCLGNKNLN 316
Query: 200 RQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI 259
+QT+L SATLP+ + + K L +P +V ++ D ISP + L F EK+A L+ +I
Sbjct: 317 KQTILISATLPTNVENYFKLKLNNPEIVFVNSDNNISPQINLHFL-FCSYEKYAILIKLI 375
Query: 260 ----REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRAR 315
++ + +T+IF TK+H+ F + + + S YG+ D R ++ F
Sbjct: 376 LLFKQKRLG---KTIIFFCTKYHILFFSKILNFLKINHSTLYGNSDTSFRFNQINNFTKH 432
Query: 316 KTM-FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARA-GRTGTAFSFVTSE 373
+ FL+VTD+A+RGI+I + NVIN++ P PKIF+HR+GRA R G++G S VT +
Sbjct: 433 DDIQFLLVTDLASRGINITSVQNVINYNLPFSPKIFLHRIGRACRMEGQSGYGISIVTYQ 492
Query: 374 DMAYLLDLHLFLSKPIR--------AAPSEE 396
D+ Y ++ F+ K ++ +APS E
Sbjct: 493 DILYAYEICFFIGKKLKFIKDSTTSSAPSYE 523
>gi|302792278|ref|XP_002977905.1| hypothetical protein SELMODRAFT_107914 [Selaginella moellendorffii]
gi|300154608|gb|EFJ21243.1| hypothetical protein SELMODRAFT_107914 [Selaginella moellendorffii]
Length = 741
Score = 259 bits (663), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 142/363 (39%), Positives = 217/363 (59%), Gaps = 10/363 (2%)
Query: 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPM 81
+ F LN+S + RA GY+ PTPIQ +PL L+G D+ A TGSGKTAAF +P+
Sbjct: 114 ASSFIELNVSRPLLRACDALGYRQPTPIQAACIPLALAGRDICGSAVTGSGKTAAFALPI 173
Query: 82 LQRL---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138
L+RL + +P +R LI++PTR+LA+Q ++L ++TD+R L+VGG S + Q
Sbjct: 174 LERLLFRPRRIP--AIRVLIITPTRELAVQLHSMIEKLAQFTDIRCCLVVGGLSSKVQEV 231
Query: 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198
L +PDI++ATPGR++ HL + + L+ + +V DEAD L +GF E++H+++
Sbjct: 232 ALRTHPDIVVATPGRMIDHLRNTQSVGLEELAILVLDEADRLLELGFREEIHELVKLCPS 291
Query: 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR---QEEKHAAL 255
RQT+LFSAT+ ++E K L+ P + D T+ L +R +E+K A +
Sbjct: 292 RRQTMLFSATMTDEVSELIKLSLKSPVRLSADPSTERPSTLTEEVIRIRAGHEEDKEAIV 351
Query: 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRAR 315
L + + S +T+IF TK L +LF GL+ + +G++ Q R + FR +
Sbjct: 352 LSLCSRSLKS--KTIIFSGTKVEAHRLKILFGLSGLKSAELHGNLTQAQRLEALEAFRKQ 409
Query: 316 KTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDM 375
+ FLI TDVAARG+DI +++VIN + P + K +VHRVGR ARAGR G + + +T +D
Sbjct: 410 EVDFLIATDVAARGLDIIGVESVINLECPKEIKTYVHRVGRTARAGRHGRSVTLMTEQDR 469
Query: 376 AYL 378
L
Sbjct: 470 LLL 472
>gi|255935375|ref|XP_002558714.1| Pc13g02750 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211583334|emb|CAP91344.1| Pc13g02750 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 493
Score = 259 bits (663), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 146/352 (41%), Positives = 208/352 (59%), Gaps = 5/352 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L L ++ A + GYK PTPIQ +++PL L G D++ +A TGSGKTA+F++P+LQ
Sbjct: 73 FKELGLIDSLCEACDKMGYKAPTPIQSESIPLALQGRDIIGLAETGSGKTASFVLPILQA 132
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L + PQ L+L+PTR+LA Q + LG ++R + LVGG M Q L + P
Sbjct: 133 LMEK-PQS-FFGLVLAPTRELAYQISLACESLGATINVRSTTLVGGMDMVPQSIALGKKP 190
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
II+ATPGRL+ HL + SL+S++++V DEAD L M F L KIL L R+T L
Sbjct: 191 HIIVATPGRLLDHLENTKGFSLRSLKFLVMDEADRLLDMDFGPILDKILKVLPRERRTFL 250
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR-QEEKHAALLYMIREHI 263
FSATL S + +A L +P V + + + + LR + K L+Y++ E I
Sbjct: 251 FSATLSSKVESLQRASLSNPARVSISSSKYATVETLQQTYLLRPYKHKDIYLVYLLHEFI 310
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
Q +IF+ T H + + L R G +G M Q AR + +FR++ L+ T
Sbjct: 311 G--QSVIIFMRTVHETQRVAFLLRGLGFGAIPLHGQMSQSARLGALGKFRSKSREILVAT 368
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDM 375
DVAARG+DIP +D V+N+D P K ++HRVGR ARAG++GTA SFVT D+
Sbjct: 369 DVAARGLDIPSVDCVLNFDLPTDSKTYIHRVGRTARAGKSGTAISFVTQYDV 420
>gi|91201974|emb|CAJ75034.1| similar to ATP-independent RNA helicase DbpA [Candidatus Kuenenia
stuttgartiensis]
Length = 449
Score = 259 bits (662), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 152/382 (39%), Positives = 218/382 (57%), Gaps = 10/382 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F++ N + N+ IK GY PTPIQ + +PLIL G DV+ +A+TG+GKTAAF++P+L R
Sbjct: 4 FQTFNFNSNIVAGIKSVGYVTPTPIQLQAIPLILEGTDVMGLAQTGTGKTAAFVLPILHR 63
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L Q +G +RAL++ PTR+LA Q L+ K LG T LR + GG S+ Q L
Sbjct: 64 LMQG-ERGKIRALVIVPTRELAEQVLQDFKTLGSKTSLRSISIYGGVSITQQINRLRSGV 122
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
+I++A PGRL+ H+ + + L VE +V DEAD +F MGF + KI+ LS RQTLL
Sbjct: 123 EIVVACPGRLLDHMKQ-RTIELSRVEVLVLDEADHMFDMGFLPDIRKIIKCLSHKRQTLL 181
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P + + A+ L P V+L T + +K A + ++Q K LL +++ +
Sbjct: 182 FSATMPDEIRKLAQEALTKPVTVQLG-KTAPASTVKHALYPVKQHLKIPLLLKILQH--T 238
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
Q LIF TK+ + L G + + G++ Q R+ + FR L+ TD
Sbjct: 239 DTQSVLIFTRTKYRAKSLGDRLIRAGYKATSFQGNLSQPQRQAALGGFRNGAYQILVATD 298
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
+AARGIDI + +VIN+D P P+ +VHR+GR RA RTG AF+ VT +D A + +
Sbjct: 299 IAARGIDISQISHVINYDIPDTPEAYVHRIGRTGRAARTGDAFTLVTEDDKAMVRGIENI 358
Query: 385 LSKPIRAAPSEEEVLLDMDGVM 406
L I E L D D M
Sbjct: 359 LGSRI-----ERYTLEDFDYSM 375
>gi|328869268|gb|EGG17646.1| putative RNA helicase [Dictyostelium fasciculatum]
Length = 860
Score = 259 bits (662), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 143/360 (39%), Positives = 216/360 (60%), Gaps = 3/360 (0%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE L+LS + +A+ + GY PTPIQ K +PLIL+G D++A A TGSGKTAAF++P+L+R
Sbjct: 236 FEELHLSRPLQKAVAKLGYTQPTPIQAKAIPLILNGKDILASATTGSGKTAAFILPILER 295
Query: 85 LNQHVPQGGV-RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L V R LI+ PTR+LALQ + L ++T+++ L+VGG S + Q EL +
Sbjct: 296 LLYRDATHRVSRVLIVLPTRELALQCHSVFESLAQFTNVQSCLVVGGLSNKVQEHELRKR 355
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
PD+IIATPGRL+ HL D+ L+ +E +V DEAD L MGF ++L++++ + RQTL
Sbjct: 356 PDVIIATPGRLIDHLLNAHDVGLEDIEILVLDEADRLLDMGFKDELNRVVESCPDGRQTL 415
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR--QEEKHAALLYMIRE 261
LFSATL + AK L P V +D +++ L+ F ++ Q A+L +
Sbjct: 416 LFSATLSDDVKLLAKLSLSQPVRVAVDALFQVASTLEQEFIKIKPGQLADRTAMLLSLCT 475
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ + ++F +K V + +L GL+ +GD++Q+ R + FR + FL+
Sbjct: 476 RVFNGGGCIVFFRSKKEVHRIAILLGLSGLKVGELHGDLNQEQRFEALQSFRNGEVDFLL 535
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TD+AARG+D+ + VIN++ P ++HRVGR ARAG G + SF+T D L D+
Sbjct: 536 ATDIAARGLDVLGVRTVINYNMPRSLAQYIHRVGRTARAGLAGRSCSFITEADRKILKDI 595
>gi|344199440|ref|YP_004783766.1| DEAD/DEAH box helicase domain-containing protein [Acidithiobacillus
ferrivorans SS3]
gi|343774884|gb|AEM47440.1| DEAD/DEAH box helicase domain protein [Acidithiobacillus
ferrivorans SS3]
Length = 419
Score = 259 bits (662), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 142/368 (38%), Positives = 213/368 (57%), Gaps = 8/368 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FESL LS ++RA +GY PTPIQ + +P+++SG D++A A+TG+GKTAAF +P+L +
Sbjct: 4 FESLGLSEPIWRAAAERGYTSPTPIQEQAIPVVMSGVDLLAGAQTGTGKTAAFAMPILHK 63
Query: 85 LNQHVPQGG-----VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139
L+ VRALIL PTR+LA Q + + GRY LR +L+GG + Q ++
Sbjct: 64 LSATADTAARGPSSVRALILVPTRELAAQVEESVQLYGRYLSLRSLVLIGGVKINPQMQK 123
Query: 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSEN 199
L ++ D+++ATPGRL+ H+ + + L VE +V DEAD + MGF + +IL L +
Sbjct: 124 LRRSVDVLVATPGRLLDHIQQ-RSVDLSRVEILVLDEADRMLDMGFIRDIRRILAVLPKK 182
Query: 200 RQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI 259
RQ LLFSAT + A L +P V + + ++ F + Q+ K L ++I
Sbjct: 183 RQNLLFSATFSPEIRALADGLLNNPASVEVASRNATADNVAQRVFAVDQDRKRELLAHLI 242
Query: 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319
EH Q L+F TKH + L ++G++ +GD Q AR ++ F+ K
Sbjct: 243 EEHQWG--QVLVFTRTKHGADRLAKHLSQDGVQAMAIHGDKSQGARTRALAEFKEGKVRV 300
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLL 379
L+ TD+AARGIDI L +V+N++ P P+ +VHR+GR RAG G A S V+SE+ L
Sbjct: 301 LVATDIAARGIDISDLPHVVNFELPHVPEDYVHRIGRTGRAGNNGQAVSLVSSEERKQLQ 360
Query: 380 DLHLFLSK 387
D+ L +
Sbjct: 361 DVEKLLRR 368
>gi|336310719|ref|ZP_08565690.1| ATP-dependent RNA helicase [Shewanella sp. HN-41]
gi|335865801|gb|EGM70809.1| ATP-dependent RNA helicase [Shewanella sp. HN-41]
Length = 432
Score = 259 bits (662), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 137/369 (37%), Positives = 219/369 (59%), Gaps = 6/369 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FES + SP + RAI GY+ TPIQ++ +P I G DV+A A+TG+GKTAAF +P+LQ+
Sbjct: 3 FESFSFSPEILRAISDCGYQQMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQK 62
Query: 85 LNQH---VPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
+ ++ + R LIL+PTR+LA Q +Y + + + GG +E+Q ++L
Sbjct: 63 MVENPSETLKSNARVLILTPTRELAAQVADNVTAYCKYLNFSVLTIYGGVKVETQAQKLK 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ D+I+ATPGRL+ HL+ ++SL +V+++V DEAD + MGF+ + KIL +++ RQ
Sbjct: 123 RGADVIVATPGRLLEHLTAC-NLSLSNVDFLVLDEADRMLDMGFSADIQKILQAVNKKRQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
LLFSAT SA+ + A + P ++ +D + + + + Q K L +I +
Sbjct: 182 NLLFSATFSSAVKKLANDMMVKPQVISVDKQNTTADTVSQVVYPVEQRRKRELLSELIGK 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ QQ L+F +T+ + L +G+ V +G+ Q +R+ + F A K L+
Sbjct: 242 K--NWQQVLVFTATREAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFVAGKVRVLV 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
T+VAARG+DIP L+ V+N+D P + +VHR+GR RAG+TG A SFV+ E+ L D+
Sbjct: 300 ATEVAARGLDIPSLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEERTLADI 359
Query: 382 HLFLSKPIR 390
+ + IR
Sbjct: 360 EKLIGQQIR 368
>gi|171057308|ref|YP_001789657.1| DEAD/DEAH box helicase [Leptothrix cholodnii SP-6]
gi|170774753|gb|ACB32892.1| DEAD/DEAH box helicase domain protein [Leptothrix cholodnii SP-6]
Length = 479
Score = 259 bits (661), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 145/371 (39%), Positives = 219/371 (59%), Gaps = 9/371 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+SL L P + RAI GY TPIQ K +P++L G DV+ A+TG+GKTAAF +P+LQ+
Sbjct: 17 FDSLPLDPKLLRAIVDAGYLTMTPIQAKAIPIVLDGRDVMGAAQTGTGKTAAFSLPLLQK 76
Query: 85 LNQHVPQGG------VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138
+ +H VRAL+L+PTR+LA Q K R++ LR++ + GG M Q
Sbjct: 77 MLRHENASASPARHPVRALVLAPTRELADQVANNVKTYARHSQLRVTCVFGGIDMAPQTA 136
Query: 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198
EL + +++IATPGRL+ H+ + ++ L VEYVV DEAD + +GF L +IL L +
Sbjct: 137 ELKRGVEVLIATPGRLLDHI-QAKNCQLNQVEYVVLDEADRMLDIGFLPDLQRILSYLPK 195
Query: 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258
RQTLLFSAT + + A++ L+DP LV + + +++ F+++ ++K +L++
Sbjct: 196 TRQTLLFSATFSPEIKKLAQSYLQDPLLVEVARPNATATNVEQRFYSVTDDDKRRTVLHI 255
Query: 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
+RE S Q ++FV++K L F +GL S +GD QD R + F+ +
Sbjct: 256 LRER--SITQAIVFVNSKLGAARLARSFERDGLRTSALHGDKSQDERLKALDAFKRGEVD 313
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
L+ TDVAARG+DI L V N+D P + +VHR+GR RAG +G A S V+ +D +
Sbjct: 314 VLVATDVAARGLDIADLPAVFNFDIPFNAEDYVHRIGRTGRAGASGLAVSLVSHDDNRLV 373
Query: 379 LDLHLFLSKPI 389
D+ + K I
Sbjct: 374 SDIEQLIKKKI 384
>gi|124265824|ref|YP_001019828.1| ATP-dependent RNA helicase 2 [Methylibium petroleiphilum PM1]
gi|124258599|gb|ABM93593.1| putative ATP-dependent RNA helicase 2 [Methylibium petroleiphilum
PM1]
Length = 494
Score = 259 bits (661), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 142/369 (38%), Positives = 219/369 (59%), Gaps = 9/369 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F++L L P + RA+ GY + TPIQ K +PL+L+G DV+ A+TG+GKTAAF +P+LQ+
Sbjct: 21 FDTLALDPKLLRAVAESGYLLMTPIQAKAIPLVLAGRDVMGAAQTGTGKTAAFSLPLLQK 80
Query: 85 LNQHVPQGG------VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138
+ +H VRAL+L+PTR+LA Q K ++T LR +++ GG M+ Q
Sbjct: 81 MLKHESSSTSPARHPVRALVLAPTRELADQVANNVKTYSKHTQLRATVVFGGIDMKPQTA 140
Query: 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198
EL + +++IATPGRL+ H+ E ++ SL VEYVV DEAD + +GF L +IL L +
Sbjct: 141 ELKRGVEVLIATPGRLLDHI-EAKNCSLSQVEYVVLDEADRMLDIGFLPDLQRILSYLPK 199
Query: 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258
+RQTLLFSAT + + A + L+DP LV + ++ F+ + ++K A+ +
Sbjct: 200 SRQTLLFSATFSPEIKKLANSYLQDPILVETARPNATASTVEQRFYRVEDDDKRNAVKQL 259
Query: 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
+R + Q+++FV++K L F +GL +GD QD R ++ F+A +
Sbjct: 260 LRTRAIT--QSIVFVNSKLGAARLARAFERDGLRTQALHGDKSQDERLKALAAFKAGEVD 317
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
L+ TDVAARG+DI L V N+D P + +VHR+GR RAG +G A + V+ +D +
Sbjct: 318 LLVATDVAARGLDIADLPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAITLVSRDDARLV 377
Query: 379 LDLHLFLSK 387
D+ + K
Sbjct: 378 SDIEKLIKK 386
>gi|402077170|gb|EJT72519.1| ATP-dependent RNA helicase DRS1 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 827
Score = 259 bits (661), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 144/364 (39%), Positives = 215/364 (59%), Gaps = 8/364 (2%)
Query: 16 QKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTA 75
+K K + F+ ++LS + R + G+ PTPIQ K +P+ L G DVV A+TGSGKT
Sbjct: 276 EKGKGGAASFQGMSLSRPILRGLASVGFGKPTPIQAKAIPMALMGKDVVGGAQTGSGKTG 335
Query: 76 AFLVPMLQRL---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
AF+VP+L+RL + VP R ++L+PTR+LA+Q +L +TD++ L VGG S
Sbjct: 336 AFMVPILERLLYRPKKVPTS--RVVVLTPTRELAIQCHAVAIKLASHTDIKFCLAVGGLS 393
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
++ Q EL PD+IIATPGR + H+ ++ +VE +V DEAD + GFA++L++I
Sbjct: 394 LKVQEAELRLRPDVIIATPGRFIDHMRNSASFAVDTVEILVLDEADRMLEDGFADELNEI 453
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR--QEE 250
L L ++RQT+LFSAT+ S++ +AGL P + +D K L F LR +EE
Sbjct: 454 LTTLPKSRQTMLFSATMTSSVDTLIRAGLNKPVRIMVDSQKKTVGTLVQEFVRLRPGREE 513
Query: 251 KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVS 310
K L + + + + ++ +IF K ++F GL + +G M+Q R V
Sbjct: 514 KRMGYLVHLCKKLYT-ERVIIFFRQKKIAHHARIIFGLLGLSCAELHGSMNQTQRIQSVE 572
Query: 311 RFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFV 370
FR K FL+ TD+A+RG+DI +D VIN++ P +I+VHRVGR ARAGR+G A +
Sbjct: 573 DFRDGKVSFLLATDLASRGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGRSGVAVTLA 632
Query: 371 TSED 374
D
Sbjct: 633 AEPD 636
>gi|260597188|ref|YP_003209759.1| ATP-dependent RNA helicase RhlE [Cronobacter turicensis z3032]
gi|260216365|emb|CBA29399.1| Putative ATP-dependent RNA helicase rhlE [Cronobacter turicensis
z3032]
Length = 500
Score = 259 bits (661), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 144/369 (39%), Positives = 212/369 (57%), Gaps = 7/369 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+SL LSP + RAI +GY PTPIQR+ +P++LSG D++A A+TG+GKTA F +P+LQR
Sbjct: 5 FDSLGLSPEILRAIAEQGYNEPTPIQRQAIPVVLSGKDLMASAQTGTGKTAGFTLPLLQR 64
Query: 85 LNQHVP--QG--GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
L P QG VRALIL+PTR+LA Q + +E +Y D+R ++ GG S+ Q +L
Sbjct: 65 LTAKAPHAQGRRPVRALILTPTRELAAQVGENVREYSKYLDIRSLVVFGGVSINPQMMKL 124
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
D++IATPGRL+ L + L VE +V DEAD + MGF + ++L +L R
Sbjct: 125 RSGVDVLIATPGRLLD-LEHQNAVKLDQVEVLVLDEADRMLDMGFIHDIRRVLAKLPPKR 183
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
Q LLFSAT + A+ LR+P V + S + + ++ K L Y+I
Sbjct: 184 QNLLFSATFSDDIKTLAEKLLRNPEEVEVARRNTASEQITQHVHFVDKKRKRELLSYLIG 243
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
+ + QQ L+F TKH L ++G+ + +G+ Q AR ++ F+ L
Sbjct: 244 D--GNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKTGGIRVL 301
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLD 380
+ TD+AARG+DI L +V+N++ P P+ +VHR+GR RA TG A S V ++ L D
Sbjct: 302 VATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRD 361
Query: 381 LHLFLSKPI 389
+ L + I
Sbjct: 362 IERVLQREI 370
>gi|325289283|ref|YP_004265464.1| DEAD/DEAH box helicase [Syntrophobotulus glycolicus DSM 8271]
gi|324964684|gb|ADY55463.1| DEAD/DEAH box helicase domain protein [Syntrophobotulus glycolicus
DSM 8271]
Length = 382
Score = 259 bits (661), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 136/370 (36%), Positives = 224/370 (60%), Gaps = 9/370 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQ- 83
FE LN+ + +A+K +GY+ PTPIQ + +P +L G D++ A+TG+GKTAAF +P+LQ
Sbjct: 3 FEELNIITPIMKALKAEGYEAPTPIQERAIPAVLKGRDLLGCAQTGTGKTAAFSIPLLQI 62
Query: 84 ----RLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139
R+N+ P+ +RALIL+PTR+LALQT + + G+Y ++ +++ GG S ++Q
Sbjct: 63 LSRERINERAPRT-IRALILAPTRELALQTGENLRAYGKYLGIKHTVIFGGVSQDAQTRA 121
Query: 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSEN 199
+ DI++ATPGRL+ + + + L ++ +V DEAD + MGFA + +IL +L
Sbjct: 122 MKAGVDILVATPGRLLDLMGQ-GYVRLDHIKLLVLDEADRMLDMGFAHDMKRILAKLPAA 180
Query: 200 RQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI 259
+QTLLFSAT+P + A A L +P + + + + + + + + + K A L+ ++
Sbjct: 181 KQTLLFSATMPPEMKAMAGAILSNPVKIEVAPVSSTADTIDQSVYFVEKSGKKALLIELL 240
Query: 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319
R S L+F TKH + + + ++ +G+ Q AR+ ++ F+A++T
Sbjct: 241 RNQ--SVDSALVFTRTKHGADNVVRALEKARIKAQAIHGNKSQAARQTALNNFKAKRTRV 298
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLL 379
L+ TD+AARGID+ L +VIN+D P P+ +VHR+GR RAG GTA SF E+ YL
Sbjct: 299 LVATDIAARGIDVQELSHVINFDLPNIPETYVHRIGRTGRAGMGGTALSFCDDEEKTYLR 358
Query: 380 DLHLFLSKPI 389
D+ +++ I
Sbjct: 359 DIQKLIAREI 368
>gi|418024095|ref|ZP_12663079.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS625]
gi|353536968|gb|EHC06526.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS625]
Length = 433
Score = 259 bits (661), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 137/369 (37%), Positives = 218/369 (59%), Gaps = 6/369 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FES + SP + RAI GY+ TPIQ++ +P I G DV+A A+TG+GKTAAF +P+LQ+
Sbjct: 3 FESFSFSPEILRAISDCGYQQMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQK 62
Query: 85 LNQH---VPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
+ ++ + R LIL+PTR+LA Q +Y + + + GG +E+Q ++L
Sbjct: 63 MVENPSETLKSNARVLILTPTRELAAQVADNVTAYCKYLNFSVLTIYGGVKIETQAQKLK 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ D+I+ATPGRL+ HL+ ++SL +V+++V DEAD + MGF+ + KIL +++ RQ
Sbjct: 123 RGADVIVATPGRLLEHLTAC-NLSLSNVDFLVLDEADRMLDMGFSADIQKILQAVNKKRQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
LLFSAT SA+ + A + P ++ +D + + + + Q K L +I +
Sbjct: 182 NLLFSATFSSAVKKLANDMMVKPQVISVDKQNTTADTVSQVVYPVEQRRKRELLSELIGK 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ QQ L+F +T+ + L +G+ V +GD Q +R+ + F A L+
Sbjct: 242 K--NWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGDKGQGSRRRALREFVAGDVRVLV 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
T+VAARG+DIP L+ V+N+D P + +VHR+GR RAG+TG A SFV+ E+ L D+
Sbjct: 300 ATEVAARGLDIPSLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEERTLADI 359
Query: 382 HLFLSKPIR 390
+ + IR
Sbjct: 360 EKLIGQQIR 368
>gi|373950432|ref|ZP_09610393.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
gi|386323730|ref|YP_006019847.1| DEAD/DEAH box helicase [Shewanella baltica BA175]
gi|333817875|gb|AEG10541.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
gi|373887032|gb|EHQ15924.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
Length = 433
Score = 258 bits (660), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 137/369 (37%), Positives = 218/369 (59%), Gaps = 6/369 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FES + SP + RAI GY+ TPIQ++ +P I G DV+A A+TG+GKTAAF +P+LQ+
Sbjct: 3 FESFSFSPEILRAISDCGYQQMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQK 62
Query: 85 LNQH---VPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
+ ++ + R LIL+PTR+LA Q +Y + + + GG +E+Q ++L
Sbjct: 63 MVENPSETLKSNARVLILTPTRELAAQVADNVTAYCKYLNFSVLTIYGGVKIETQAQKLK 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ D+I+ATPGRL+ HL+ ++SL +V+++V DEAD + MGF+ + KIL +++ RQ
Sbjct: 123 RGADVIVATPGRLLEHLTAC-NLSLSNVDFLVLDEADRMLDMGFSADIQKILQAVNKKRQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
LLFSAT SA+ + A + P ++ +D + + + + Q K L +I +
Sbjct: 182 NLLFSATFSSAVKKLANDMMVKPQVISVDKQNTTADTVSQVVYPVEQRRKRELLSELIGK 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ QQ L+F +T+ + L +G+ V +GD Q +R+ + F A L+
Sbjct: 242 K--NWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGDKGQGSRRRALREFVAGDVRVLV 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
T+VAARG+DIP L+ V+N+D P + +VHR+GR RAG+TG A SFV+ E+ L D+
Sbjct: 300 ATEVAARGLDIPSLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEERTLADI 359
Query: 382 HLFLSKPIR 390
+ + IR
Sbjct: 360 EKLIGQQIR 368
>gi|212533429|ref|XP_002146871.1| ATP-dependent RNA helicase (Drs1), putative [Talaromyces marneffei
ATCC 18224]
gi|210072235|gb|EEA26324.1| ATP-dependent RNA helicase (Drs1), putative [Talaromyces marneffei
ATCC 18224]
Length = 826
Score = 258 bits (660), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 141/367 (38%), Positives = 218/367 (59%), Gaps = 10/367 (2%)
Query: 14 EKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGK 73
EK + +G F++ NLS + R + G+ PTPIQRK +P+ L G DVV A TGSGK
Sbjct: 295 EKDADDAANGSFQNYNLSRPILRGLAAVGFTKPTPIQRKAIPVALLGKDVVGGAVTGSGK 354
Query: 74 TAAFLVPMLQRL---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGG 130
T AF++P+L+RL + VP R IL PTR+LA+Q +L YTD+ L+GG
Sbjct: 355 TGAFIIPILERLLYRQRKVPTS--RVAILMPTRELAVQCFNVATKLATYTDITFCQLIGG 412
Query: 131 DSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLH 190
S+ Q L + PDIIIATPGR + H+ ++ ++E +V DEAD + GFA++L+
Sbjct: 413 FSLREQENILKKRPDIIIATPGRFIDHMRNSSSFTVDTLEILVLDEADRMLEDGFADELN 472
Query: 191 KILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTL---R 247
+IL + ++RQT+LFSAT+ ++ + + GL P + +D + + L F L R
Sbjct: 473 EILTTIPKSRQTMLFSATMTDSVDKLIRVGLNRPVRLMVDAKKQTAGTLVQEFVRLRPGR 532
Query: 248 QEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKI 307
++++ A+L+++ ++ +S + +IF K + V+F GL+ + +G M Q+ R
Sbjct: 533 EDKRLASLIHLCQQVYTS--RVIIFFRQKKEAHRVRVIFGLFGLKAAELHGSMSQEQRIK 590
Query: 308 HVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAF 367
V FR K FL+ TDVA+RG+DI ++ VIN++ P +I++HRVGR ARAGR+G A
Sbjct: 591 SVEDFRDGKVAFLLATDVASRGLDIKGVETVINYEAPQTHEIYLHRVGRTARAGRSGRAC 650
Query: 368 SFVTSED 374
+ D
Sbjct: 651 TLAADPD 657
>gi|126175289|ref|YP_001051438.1| DEAD/DEAH box helicase [Shewanella baltica OS155]
gi|153001611|ref|YP_001367292.1| DEAD/DEAH box helicase [Shewanella baltica OS185]
gi|160876347|ref|YP_001555663.1| DEAD/DEAH box helicase [Shewanella baltica OS195]
gi|217972460|ref|YP_002357211.1| DEAD/DEAH box helicase [Shewanella baltica OS223]
gi|378709548|ref|YP_005274442.1| DEAD/DEAH box helicase [Shewanella baltica OS678]
gi|386342041|ref|YP_006038407.1| DEAD/DEAH box helicase [Shewanella baltica OS117]
gi|125998494|gb|ABN62569.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
gi|151366229|gb|ABS09229.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
gi|160861869|gb|ABX50403.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
gi|217497595|gb|ACK45788.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
gi|315268537|gb|ADT95390.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
gi|334864442|gb|AEH14913.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS117]
Length = 433
Score = 258 bits (660), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 137/369 (37%), Positives = 218/369 (59%), Gaps = 6/369 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FES + SP + RAI GY+ TPIQ++ +P I G DV+A A+TG+GKTAAF +P+LQ+
Sbjct: 3 FESFSFSPEILRAISDCGYQQMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQK 62
Query: 85 LNQH---VPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
+ ++ + R LIL+PTR+LA Q +Y + + + GG +E+Q ++L
Sbjct: 63 MVENPSETLKSNARVLILTPTRELAAQVADNVTAYCKYLNFSVLTIYGGVKIETQAQKLK 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ D+I+ATPGRL+ HL+ ++SL +V+++V DEAD + MGF+ + KIL +++ RQ
Sbjct: 123 RGADVIVATPGRLLEHLTAC-NLSLSNVDFLVLDEADRMLDMGFSADIQKILQAVNKKRQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
LLFSAT SA+ + A + P ++ +D + + + + Q K L +I +
Sbjct: 182 NLLFSATFSSAVKKLANDMMVKPQVISVDKQNTTADTVSQVVYPVEQRRKRELLSELIGK 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ QQ L+F +T+ + L +G+ V +GD Q +R+ + F A L+
Sbjct: 242 K--NWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGDKGQGSRRRALREFVAGDVRVLV 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
T+VAARG+DIP L+ V+N+D P + +VHR+GR RAG+TG A SFV+ E+ L D+
Sbjct: 300 ATEVAARGLDIPSLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEERTLADI 359
Query: 382 HLFLSKPIR 390
+ + IR
Sbjct: 360 EKLIGQQIR 368
>gi|367049970|ref|XP_003655364.1| hypothetical protein THITE_2119013 [Thielavia terrestris NRRL 8126]
gi|347002628|gb|AEO69028.1| hypothetical protein THITE_2119013 [Thielavia terrestris NRRL 8126]
Length = 755
Score = 258 bits (660), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 149/366 (40%), Positives = 211/366 (57%), Gaps = 8/366 (2%)
Query: 14 EKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGK 73
EK KK K F L LS + RA+ G+ PTPIQ KT+P+ L G DVV A TGSGK
Sbjct: 223 EKPAKKGKLSSFLDLPLSRPLLRALTSVGFDEPTPIQAKTIPIALMGKDVVGGAVTGSGK 282
Query: 74 TAAFLVPMLQRL---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGG 130
TAAF+VP+L+RL VP R +IL+PTR+LA+Q +L R+TD++ L GG
Sbjct: 283 TAAFMVPILERLLHRPNKVPT--TRVVILTPTRELAMQCHAVATKLARFTDIKFCLAAGG 340
Query: 131 DSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLH 190
S + Q EL PD++IATPGR + H+ ++ VE +V DEAD + GFA++L+
Sbjct: 341 LSRKVQEAELRLRPDVVIATPGRFIDHMRNSASFAVDRVEILVLDEADRMLEDGFADELN 400
Query: 191 KILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR--Q 248
+IL L ++RQT+LFSAT+ S++ + GL P + +D + L F LR +
Sbjct: 401 EILTTLPKSRQTMLFSATMTSSVDNLIRVGLNKPVRIMVDSQKATAGTLTQEFVRLRPGR 460
Query: 249 EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIH 308
EEK L I + + + ++ +IF K ++F GL + +G M Q R
Sbjct: 461 EEKRMGYLVHICKTLYT-KRVIIFFRQKKVAHRARIIFGLLGLSCAELHGSMSQTQRIGS 519
Query: 309 VSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFS 368
V FR K +L+ TD+A+RG+DI +D VIN++ P +I+VHRVGR ARAGR+G A +
Sbjct: 520 VEDFRDGKVDYLLATDLASRGLDIKRVDTVINYEAPQNLEIYVHRVGRTARAGRSGVAIT 579
Query: 369 FVTSED 374
D
Sbjct: 580 LAAEPD 585
>gi|171685610|ref|XP_001907746.1| hypothetical protein [Podospora anserina S mat+]
gi|170942766|emb|CAP68419.1| unnamed protein product [Podospora anserina S mat+]
Length = 798
Score = 258 bits (660), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 138/363 (38%), Positives = 216/363 (59%), Gaps = 6/363 (1%)
Query: 16 QKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTA 75
+++K F ++LS + + + G+ PTPIQ KT+P+ L G DVV A TGSGKT
Sbjct: 266 KQEKGVHSSFLEMSLSRPILKGLNSVGFTKPTPIQSKTIPIALMGKDVVGGAVTGSGKTG 325
Query: 76 AFLVPMLQRLNQHVPQ-GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSME 134
AFLVP+L+RL + R +IL+PTR+LA+Q +L +TD++ L VGG S++
Sbjct: 326 AFLVPILERLLYRSKKVATTRVVILAPTRELAIQCHAVGVKLASHTDIKFCLAVGGLSLK 385
Query: 135 SQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILG 194
Q +EL PD++IATPGR + H+ ++++VE +V DEAD + GFA++L++IL
Sbjct: 386 VQEQELRLRPDVVIATPGRFIDHMRNSASFAVETVEILVLDEADRMLEDGFADELNEILT 445
Query: 195 QLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAA 254
L ++RQT+LFSAT+ S++ +AGL P +++D K + +L+ F LR +
Sbjct: 446 TLPKSRQTMLFSATMTSSVDRLIRAGLNKPVRIQVDSQKKTASNLRQEFVRLRPGREKKR 505
Query: 255 LLYMIREHISS---DQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSR 311
+ Y++ HI ++ +IF K ++F G+ + +G M+Q R V
Sbjct: 506 MGYLV--HICKTLYTERVIIFFRQKKIAHETRIIFGLLGMSCAELHGSMNQAQRIASVEA 563
Query: 312 FRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVT 371
FR K FL+ TD+A+RG+DI +D VIN++ P +I++HR+GR ARAGR+G A +
Sbjct: 564 FRDGKVNFLLATDLASRGLDIKGVDTVINYEAPQNLEIYIHRIGRTARAGRSGVALTLAA 623
Query: 372 SED 374
D
Sbjct: 624 EPD 626
>gi|339627938|ref|YP_004719581.1| ATP-dependent RNA helicase [Sulfobacillus acidophilus TPY]
gi|379007571|ref|YP_005257022.1| ATP-dependent RNA helicase DbpA [Sulfobacillus acidophilus DSM
10332]
gi|339285727|gb|AEJ39838.1| ATP-dependent RNA helicase [Sulfobacillus acidophilus TPY]
gi|361053833|gb|AEW05350.1| ATP-dependent RNA helicase DbpA [Sulfobacillus acidophilus DSM
10332]
Length = 525
Score = 258 bits (660), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 134/354 (37%), Positives = 218/354 (61%), Gaps = 5/354 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+++ LS +V +A++ G++ P+PIQ KT+P+IL G D++ A+TG+GKTAAF +P+++R
Sbjct: 8 FKAMGLSSSVIKALEEMGFEEPSPIQAKTIPIILEGHDLIGQAQTGTGKTAAFGIPIVER 67
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L+ + V AL+L+PTR+LA+Q + ++G+++ +++ + GG S + Q L
Sbjct: 68 LDHRSKR--VEALVLAPTRELAIQVAEEITKIGKFSGIKVVPIYGGQSYDRQIRALEHGA 125
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
++I TPGR+M H+ + L V+ +V DEAD + MGF E + IL + ENRQTLL
Sbjct: 126 QVVIGTPGRVMDHIRR-GTLKLDHVQMMVLDEADEMLDMGFIEDIEFILKNVPENRQTLL 184
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P +A+ A+ L+DP V + + P ++ F+ +R+ EK AL ++ +
Sbjct: 185 FSATVPDPIAKLARRYLKDPVHVNISPERLTVPSIEQVFYEVREFEKLDALTRIL--DME 242
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
++T+IF TK V+ L + G +GD++Q R + RF+ + L+ TD
Sbjct: 243 EAERTIIFCRTKKRVDELTEGLQARGYTAEALHGDLNQVQRNRVMKRFKEGGSEILVATD 302
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
VAARG+DI + +VIN+D P + +VHR+GR RAGRTGTA S + ++ L
Sbjct: 303 VAARGLDIDNVTHVINYDLPQDTESYVHRIGRTGRAGRTGTAISLINPKEFRQL 356
>gi|399926673|ref|ZP_10784031.1| DEAD/DEAH box helicase [Myroides injenensis M09-0166]
Length = 414
Score = 258 bits (660), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 140/363 (38%), Positives = 213/363 (58%), Gaps = 6/363 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPM--- 81
FE L+L+ N+ RAI+ GYK PTPIQ+K +PL+L D++ A+TG+GKTAAF +P+
Sbjct: 3 FEDLHLNKNILRAIEELGYKEPTPIQQKVIPLVLEEKDLIGCAQTGTGKTAAFAMPIIHY 62
Query: 82 LQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L ++ + LI++PTR+LALQ + +YT++ L GG S++ Q E+L
Sbjct: 63 LHKIGNTKKAKKAKVLIITPTRELALQIHDNFTQYAKYTNVTSITLYGGMSIKPQIEQLN 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ D+II TPGRL+ L + + + L S+ Y+V DEAD + MGF + + K++ NRQ
Sbjct: 123 KGADVIIGTPGRLLD-LYKQKHLDLDSLHYLVLDEADLMLDMGFIDDVKKLIQLTPSNRQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
TLLFSAT+P A+ E A L+ P V +D + + +K + + + +K L ++IR
Sbjct: 182 TLLFSATMPLAIRELAHEFLQKPEYVAVDSISSTAKTVKQKVYFVEKGDKKKLLYHIIRN 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
SD L+F TK+ + + + G+ + +GD Q AR+ ++ F+ ++ L+
Sbjct: 242 EKLSD--VLVFTRTKNGADAVVEHLLKNGINAACFHGDKSQTAREEALNNFKNKEVKVLV 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TD+AARGIDI L VIN+D P P+ FVHR+GR RAG G A SF + Y D+
Sbjct: 300 ATDIAARGIDIDSLPCVINYDLPNIPETFVHRIGRTGRAGNEGVAISFCDKSEKTYWQDI 359
Query: 382 HLF 384
F
Sbjct: 360 VKF 362
>gi|333394485|ref|ZP_08476304.1| putative ATP-dependent RNA helicase [Lactobacillus coryniformis
subsp. coryniformis KCTC 3167]
gi|420145287|ref|ZP_14652757.1| ATP-dependent RNA helicase [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
gi|398403063|gb|EJN56338.1| ATP-dependent RNA helicase [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
Length = 515
Score = 258 bits (660), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 145/395 (36%), Positives = 231/395 (58%), Gaps = 10/395 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L L P + +A++R+G++ TPIQ +T+PL L+G DV+ A+TG+GKTAAF + +LQ+
Sbjct: 3 FTDLGLDPELLKAVRRQGFEEATPIQAETIPLALTGVDVIGQAQTGTGKTAAFGLAILQK 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
++ P V+ALI+SPTR+LA+QT + LG+ +++ + GG + Q L +P
Sbjct: 63 IDLENP--NVQALIISPTRELAVQTQEELYRLGQDKKVKVQAVYGGADIGRQIRSLKDHP 120
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
II+ TPGRL H++ + L V+ +V DEAD + MGF E + KI+ Q+ + RQTLL
Sbjct: 121 QIIVGTPGRLQDHINR-RTIRLDHVQVLVLDEADEMLDMGFLEDIEKIVQQVPDTRQTLL 179
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQE-EKHAALLYMIREHI 263
FSAT+P+A+ + A + DP +V++ +++ DL +F +E EK + + +
Sbjct: 180 FSATIPAAIRKIADRFMHDPKMVQIKA-KELTADLLDQYFVQTKEFEKFDVMTRLF--DV 236
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+ T++F TK V+ L+ R G +GD+ Q R + F+A + L+ T
Sbjct: 237 QQPELTIVFGRTKRRVDELSKGLRARGYNAEGIHGDLSQQKRMSVLRSFKAGRLDILVAT 296
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHL 383
DVAARG+DI + +V N+D P P +VHRVGR ARAG GT+ +FVT +M YL +
Sbjct: 297 DVAARGLDISGVTHVYNYDVPQDPDSYVHRVGRTARAGHKGTSITFVTPNEMGYLRTIEK 356
Query: 384 FLS---KPIRAAPSEEEVLLDMDGVMSKIDQAIAN 415
+P++A ++E + + + I + I N
Sbjct: 357 LTRLKMQPLKAPTAKEALQGQLSSAIESIQELIDN 391
>gi|212526914|ref|XP_002143614.1| ATP-dependent RNA helicase , putative [Talaromyces marneffei ATCC
18224]
gi|210073012|gb|EEA27099.1| ATP-dependent RNA helicase , putative [Talaromyces marneffei ATCC
18224]
Length = 474
Score = 258 bits (659), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 164/415 (39%), Positives = 233/415 (56%), Gaps = 13/415 (3%)
Query: 5 SSKAELKRR-EKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADV 63
SS+ E++ R EK + S F+ L L P + A + GYK PT IQ +++PL L D+
Sbjct: 26 SSEEEVQDRDEKDEADSAPKTFKDLGLIPQLCEACETLGYKAPTAIQAESIPLALQNRDL 85
Query: 64 VAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLR 123
+ +A TGSGKTAAF +P+LQ L PQ L+L+PTR+LA Q + + LG +R
Sbjct: 86 IGLAETGSGKTAAFALPILQALMDK-PQPFF-GLVLAPTRELAYQISEAFEALGSTISVR 143
Query: 124 ISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM 183
+LVGG M Q + + P II+ATPGRL+ HL + SL+S++Y+V DEAD L M
Sbjct: 144 SVVLVGGMDMVPQAIAIGKRPHIIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDM 203
Query: 184 GFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTK----ISPDL 239
F + KIL L R+T LFSAT+ S + +A L +P +R+ V + +S L
Sbjct: 204 DFGPIIDKILKVLPRERRTFLFSATMSSKVESLQRASLSNP--LRVSVSSNKYQTVSTLL 261
Query: 240 KLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGD 299
+ F + + K L++++ EHI Q T+IF T H L +L R G +G
Sbjct: 262 QYYMF-IPHKHKDVHLIWLLNEHIG--QTTIIFTRTIHETNRLALLTRFLGFSAIALHGQ 318
Query: 300 MDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAAR 359
+ Q +R +S+FR++ LI TDVAARG+DIP +D V+N+D K VHR+GR AR
Sbjct: 319 LSQSSRLASISKFRSKTRSILIATDVAARGLDIPSVDLVLNYDLAADSKTHVHRIGRTAR 378
Query: 360 AGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSE-EEVLLDMDGVMSKIDQAI 413
AG++G A S VT D+ L + L K + E +EVL+ D V QAI
Sbjct: 379 AGKSGKAISLVTQYDVEVWLRIEKALDKKLPEYKVEKDEVLILSDRVSEAQRQAI 433
>gi|412987541|emb|CCO20376.1| predicted protein [Bathycoccus prasinos]
Length = 843
Score = 258 bits (659), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 146/372 (39%), Positives = 214/372 (57%), Gaps = 23/372 (6%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L+LS + RA ++ GY PTPIQ +P+ L+G DV A+TGSGKTAAF +P+L+R
Sbjct: 212 FNDLHLSRPLCRACEKLGYATPTPIQAAIIPIALTGRDVCGRAQTGSGKTAAFALPLLER 271
Query: 85 LNQHVPQGGVRAL---ILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
+ H P+ V A+ I+ PTR+LA+Q + + LG YT+++++ +VGG SME Q L
Sbjct: 272 M-LHRPKNAVSAIHVVIMVPTRELAVQCAQMIQRLGEYTNVQVATIVGGLSMERQAAALR 330
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
Q P+I++ATPGRL+ H+ + V VV DEAD L MGF E++ +I+ + RQ
Sbjct: 331 QRPEIVVATPGRLIDHVRNTHSFGFEDVAAVVLDEADRLLEMGFLEEIKEIVRNMPRQRQ 390
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQE----------EK 251
TLLFSATL SA+ E A +R+P RL D+ L TL +E +K
Sbjct: 391 TLLFSATLTSAVEELASLSMRNP--ARLSADS-----LGTTPMTLTEEIVKIKPQFVAKK 443
Query: 252 HAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSR 311
A LL ++ ++T++F TK L ++ ++ +GDM Q R +
Sbjct: 444 EAHLLSLLSRSFKG-KETIVFAKTKVQAHRLKIVLGLSNIKACELHGDMTQTQRLAALED 502
Query: 312 FRAR-KTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFV 370
FR+ +T ++ TDVAARG+DI +D V+++D P ++HRVGR ARAGR G A +F+
Sbjct: 503 FRSNAETKIMVATDVAARGLDIASVDLVVSYDAPKNVASYLHRVGRTARAGRKGVAITFM 562
Query: 371 TSEDMAYLLDLH 382
D A + L
Sbjct: 563 EEYDRALVKTLQ 574
>gi|381150962|ref|ZP_09862831.1| DNA/RNA helicase, superfamily II [Methylomicrobium album BG8]
gi|380882934|gb|EIC28811.1| DNA/RNA helicase, superfamily II [Methylomicrobium album BG8]
Length = 425
Score = 258 bits (659), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 143/369 (38%), Positives = 217/369 (58%), Gaps = 7/369 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L L+ + +A+ +GY PTPIQ++T+PLIL G DV+A A+TG+GKTA+F +P+LQR
Sbjct: 3 FAQLGLAAPLLKAVAEQGYVTPTPIQQQTIPLILDGRDVLAGAQTGTGKTASFTLPLLQR 62
Query: 85 L--NQHVPQGG--VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
L + PQ +RALIL+PTR+LA Q + G++ L ++VGG S+ Q L
Sbjct: 63 LAESNDKPQKPRKIRALILAPTRELAAQVHDSVRAYGKHLPLFAEVVVGGVSINGQIRSL 122
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
+ DI++ATPGRL+ HL + +++ L +E +V DEAD + MGF + KI+G L +
Sbjct: 123 QRGCDIVVATPGRLLDHLLQ-KNIELSHLEILVLDEADRMLDMGFLPDIRKIIGHLPRQK 181
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
Q+LLFSAT P + AK L +P V + + ++K + + +E K L Y+I
Sbjct: 182 QSLLFSATFPEEIRGLAKQLLHEPAEVSVAPHNTTADNIKELCYGIAKERKRGLLSYLIG 241
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
++ +Q L+FV TKH + L ++G+ + +GD Q AR + F+ + L
Sbjct: 242 S--NNWKQVLVFVRTKHGADRLEKQLVKDGIRTAALHGDKSQGARTRALDYFKTGQVAAL 299
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLD 380
+ TD+AARG+DI L +VIN+D P P+ ++HR+GR RAG G A S V E+ L
Sbjct: 300 VATDIAARGLDIDELPHVINFDLPQVPEDYIHRIGRTGRAGANGEAVSLVCPEEAYQLAQ 359
Query: 381 LHLFLSKPI 389
+ L + I
Sbjct: 360 IEKLLGREI 368
>gi|108761880|ref|YP_632259.1| ATP-dependent RNA helicase RhlE [Myxococcus xanthus DK 1622]
gi|108465760|gb|ABF90945.1| putative ATP-dependent RNA helicase RhlE [Myxococcus xanthus DK
1622]
Length = 501
Score = 258 bits (659), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 140/360 (38%), Positives = 213/360 (59%), Gaps = 6/360 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L L + RA+K +GY PTPIQ+K +P L+G DV+ +A+TG+GKTAAF +P+LQR
Sbjct: 3 FDDLQLHDTLLRAVKAEGYTTPTPIQQKAIPHALAGRDVLGVAQTGTGKTAAFALPILQR 62
Query: 85 LNQHVPQGG---VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L+ P GG VR L+L+PTR+LA Q G+ LR +++ GG Q + L
Sbjct: 63 LSAKAPAGGARPVRCLVLTPTRELAGQVGDSFGTYGKGLPLRHAVIFGGVGQNPQVQTLR 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
D+++ATPGRL+ L E +SL+S+E V DEAD + MGF + +++ L RQ
Sbjct: 123 NGVDVLVATPGRLLD-LMEQGFVSLRSLEVFVLDEADRMLDMGFIHDVRRVIKALPPKRQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
TL FSATLP + + A++ L DP V + + + + + + +E+K L ++++E
Sbjct: 182 TLFFSATLPPDIVDLARSILTDPIRVEVTPASSTAETVSQQVYFVEREQKRGLLTHLLKE 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ + L+F TKH + G+ + +G+ Q+AR+ + FR+ L+
Sbjct: 242 --GNIHRALVFTRTKHGANRVAKQLEGAGVSSAAIHGNKSQNARERALDEFRSGTLRVLV 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TD+AARGIDI L V+N+D P P+ +VHR+GR RAG +GTA SF +E+ AYL D+
Sbjct: 300 ATDIAARGIDIDGLSYVVNYDLPNVPEQYVHRIGRTGRAGASGTAVSFCDAEERAYLRDI 359
>gi|404492159|ref|YP_006716265.1| ATP-dependent RNA helicase RhlE [Pelobacter carbinolicus DSM 2380]
gi|77544268|gb|ABA87830.1| ATP-dependent RNA helicase RhlE [Pelobacter carbinolicus DSM 2380]
Length = 432
Score = 258 bits (659), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 138/354 (38%), Positives = 212/354 (59%), Gaps = 5/354 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F S N P V + I GY PTPIQ + +P ++ G DV+ +A+TG+GKTAAF +P+LQR
Sbjct: 3 FNSFNFHPQVAKGIVAAGYVTPTPIQAQAIPSVIDGRDVMGLAQTGTGKTAAFALPILQR 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L P+G +RAL+++PTR+LA Q + ELGR+T LR + GG ++ Q L +
Sbjct: 63 LIDG-PRGRLRALVVAPTRELAEQIHQAIGELGRHTGLRSMTVYGGVNIRPQIAGLKRGV 121
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
DI++A PGRL+ H+ + + + L ++E +V DEAD +F MGF + +IL + RQTLL
Sbjct: 122 DIVVACPGRLIDHIGQ-KTIDLSNIEVLVLDEADQMFDMGFFPAVRQILRHVPAQRQTLL 180
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P+A+ + L P V++ +T + + A + + Q +K A LL ++
Sbjct: 181 FSATMPAAIRRLSGEVLTSPMTVQVG-NTTPAETVSHALYPVAQHQKTAMLLELLSA--V 237
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
+ L+F TKH + L + + G + + G++ Q R+ ++ FR K L+ TD
Sbjct: 238 DSRSVLVFTRTKHRAKRLGLQLGKAGYQATSLQGNLSQARRQEALTGFRDGKYEILVATD 297
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
+AARGID+ + +VIN+D P + +VHR+GR RA R G AF+ VT ED A +
Sbjct: 298 IAARGIDVSQVSHVINYDIPDTAEAYVHRIGRTGRASRKGEAFTLVTGEDNAMV 351
>gi|448090292|ref|XP_004197032.1| Piso0_004267 [Millerozyma farinosa CBS 7064]
gi|448094692|ref|XP_004198063.1| Piso0_004267 [Millerozyma farinosa CBS 7064]
gi|359378454|emb|CCE84713.1| Piso0_004267 [Millerozyma farinosa CBS 7064]
gi|359379485|emb|CCE83682.1| Piso0_004267 [Millerozyma farinosa CBS 7064]
Length = 500
Score = 258 bits (659), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 147/405 (36%), Positives = 223/405 (55%), Gaps = 8/405 (1%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
+E ++SK F LNL P + I + PTPIQ + +P L G D++ +A+TGSG
Sbjct: 79 KEVTVEESKVESFSELNLIPELLETINEMKFTKPTPIQAEAIPHALEGKDIIGLAQTGSG 138
Query: 73 KTAAFLVPMLQRL-NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGD 131
KTAAF +P+LQ L + P G L+L+PTR+LA Q + LG LR +VGG
Sbjct: 139 KTAAFAIPILQSLWDAQTPYFG---LVLAPTRELAYQIKETFDALGSSMGLRTVCIVGGM 195
Query: 132 SMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHK 191
M Q +L + P I++ATPGR+M HL + SLK+++Y+V DEAD L M F L K
Sbjct: 196 DMMDQARDLMRRPHILVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDK 255
Query: 192 ILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEK 251
IL + R T LFSAT+ S + + +A L +P V + + + +L + + K
Sbjct: 256 ILKVIPTQRTTYLFSATMTSKVEKLQRASLHNPVKVAVSTKYQTADNLVQSMMLVSDGYK 315
Query: 252 HAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSR 311
+ L++++ E + + ++F T H + ++L R G +G + Q R +++
Sbjct: 316 NTYLIHLLNEFVG--KSIIVFTRTCAHSQRTSLLARILGFSAVPLHGQLSQSQRLGSLNK 373
Query: 312 FRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVT 371
F++ K+ L+ TDVAARG+DIP +D VIN+D P K ++HRVGR ARAG++G + S VT
Sbjct: 374 FKSGKSNILVATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGKSGKSISLVT 433
Query: 372 SEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANG 416
D+ L + L K + PS L D + +D+A A
Sbjct: 434 QYDLELYLRIENVLGKKLPKDPSPPRQAL--DALHVHVDKATAEA 476
>gi|408675131|ref|YP_006874879.1| DEAD/DEAH box helicase domain protein [Emticicia oligotrophica DSM
17448]
gi|387856755|gb|AFK04852.1| DEAD/DEAH box helicase domain protein [Emticicia oligotrophica DSM
17448]
Length = 435
Score = 258 bits (659), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 135/370 (36%), Positives = 228/370 (61%), Gaps = 8/370 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FESLNL + A+ +GY PTPIQ++ +P++L+G D++ +A+TG+GKTAAF +P++Q+
Sbjct: 3 FESLNLIEPIRLALAAEGYTTPTPIQQQAIPIVLAGKDLIGVAQTGTGKTAAFSIPIIQQ 62
Query: 85 LNQHVPQG-----GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139
L Q V ++ALI++PTR+LA+Q + G TDL+ S++ GG Q EE
Sbjct: 63 LYQKVDTNRKGKRKIKALIVTPTRELAIQIGESLAAYGANTDLKYSVIFGGVKQGKQTEE 122
Query: 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSEN 199
L Q DI++ATPGRL+ + + ++L S+E V DEAD + MGF + +++ L
Sbjct: 123 LQQGVDILVATPGRLLDLIGQ-GIINLSSIEIFVLDEADRMLDMGFVHDVKRLIKLLPTK 181
Query: 200 RQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI 259
RQ+L FSAT+P + + + L +P V + + + +K + + +++K+A LL ++
Sbjct: 182 RQSLFFSATMPDEIVKLSATILNNPSSVSVTPVSSTADTIKQFLYHVDKKDKNALLLEIL 241
Query: 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319
++ S+ + L+F TKH + + + + ++ +G+ Q+AR+ ++ F++++T
Sbjct: 242 KD--SNIETVLVFTRTKHGADKVVKMLSGKNIKAEAIHGNKAQNARQRALNNFKSKETRV 299
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLL 379
L+ TD+AARGID+ L VIN++ P P+ +VHR+GR RAG G AFSF +E++ YL
Sbjct: 300 LVATDIAARGIDVDDLAYVINYEIPNIPETYVHRIGRTGRAGSNGIAFSFCENEELTYLK 359
Query: 380 DLHLFLSKPI 389
D+ + K I
Sbjct: 360 DIQRLIGKKI 369
>gi|357634253|ref|ZP_09132131.1| DEAD/DEAH box helicase domain protein [Desulfovibrio sp. FW1012B]
gi|357582807|gb|EHJ48140.1| DEAD/DEAH box helicase domain protein [Desulfovibrio sp. FW1012B]
Length = 492
Score = 258 bits (659), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 141/366 (38%), Positives = 215/366 (58%), Gaps = 5/366 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+S L + IKR GY+ PTPIQ + +P + G D++ +A+TG+GKTAAFL+P++ R
Sbjct: 3 FDSFCLHATITENIKRLGYENPTPIQAEAIPHVTEGRDLMGLAQTGTGKTAAFLLPIIHR 62
Query: 85 L-NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L + GVRALIL+PTR+LA Q + +LGR T LR +++ GG M Q L Q
Sbjct: 63 LMTTKSEKRGVRALILAPTRELAEQIYRAGLDLGRGTRLRAAVIYGGVGMFPQTRALRQG 122
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
DII+A PGRL+ H+++ ++ ++E +V DEAD +F MGF + +IL L RQTL
Sbjct: 123 VDIIVACPGRLLDHMNQ-GNVRFDALETLVLDEADHMFDMGFLPDIKRILSALPSERQTL 181
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
LFSAT+P A++ A L DP VR+ +S ++ A + + +K LL+++ E
Sbjct: 182 LFSATMPPAISGLAHETLTDPVTVRIGHMAPLS-TVEHAIYPISHTQKAPLLLHLLEE-- 238
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+ Q ++F TKH + L + G + + G++ Q R+I + FR L+ T
Sbjct: 239 AGKQSVIVFTRTKHRAKNLALQLCRSGHKATCLQGNLSQRQRQIAMDGFRRGSFQVLVAT 298
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHL 383
D+AARGID+ + +V+N+D P + + HR+GR RA G A +FVT EDM + +
Sbjct: 299 DIAARGIDVSQVGHVVNFDIPDTAEAYTHRIGRTGRAEHEGQAHTFVTGEDMGMVRAIES 358
Query: 384 FLSKPI 389
+ KP+
Sbjct: 359 HMKKPL 364
>gi|342877843|gb|EGU79271.1| hypothetical protein FOXB_10221 [Fusarium oxysporum Fo5176]
Length = 485
Score = 258 bits (658), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 146/378 (38%), Positives = 222/378 (58%), Gaps = 13/378 (3%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L + + A ++ YK PTPIQ K++P+ L G D++ +A TGSGKTAAF +P+LQ
Sbjct: 62 FKDLGIVDALCEACEKLNYKYPTPIQEKSIPVALEGRDIIGLAETGSGKTAAFALPVLQA 121
Query: 85 L-NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L ++ P G L+L+PTR+LA Q + + LG LR +++VGG M Q L +
Sbjct: 122 LLDKPQPLFG---LVLAPTRELATQIGQAFEALGSLISLRCAVIVGGLDMVPQAIALGKK 178
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
P II+ATPGRL+ HL + + SL++++Y++ DEAD L M F + KIL + R+T
Sbjct: 179 PHIIVATPGRLVDHLEKTKGFSLRTLKYLIMDEADRLLDMDFGPSIDKILKFIPRERRTY 238
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTK----ISPDLKLAFFTLRQEEKHAALLYMI 259
LFSAT+ S + +A LRDP VR+ + + +S L+ F + K L+Y+I
Sbjct: 239 LFSATISSKIESLQRASLRDP--VRVSISSNKYQTVSTLLQHYIF-IPHVRKDVYLIYLI 295
Query: 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319
EH+ + T+IF T + +++L R G +G + Q +R +++FR+
Sbjct: 296 NEHVG--KSTIIFTRTVWETQRISILLRTLGFGAIPLHGQLSQTSRLGALNKFRSGTRDI 353
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLL 379
L+ TDVAARG+DIP +D V+N+D P K ++HRVGR ARAG++G A S VT D+
Sbjct: 354 LVATDVAARGLDIPSVDVVLNYDLPQDSKTYIHRVGRTARAGKSGIAISVVTQYDVEIFT 413
Query: 380 DLHLFLSKPIRAAPSEEE 397
+ L K + P+E+E
Sbjct: 414 RIEAALGKKLTEYPTEKE 431
>gi|198283274|ref|YP_002219595.1| DEAD/DEAH box helicase [Acidithiobacillus ferrooxidans ATCC 53993]
gi|218667828|ref|YP_002425861.1| ATP-dependent RNA helicase RhlE [Acidithiobacillus ferrooxidans
ATCC 23270]
gi|198247795|gb|ACH83388.1| DEAD/DEAH box helicase domain protein [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218520041|gb|ACK80627.1| ATP-dependent RNA helicase RhlE [Acidithiobacillus ferrooxidans
ATCC 23270]
Length = 418
Score = 258 bits (658), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 143/368 (38%), Positives = 212/368 (57%), Gaps = 8/368 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FESL LS ++RA +GY PTPIQ + +P+++SG D++A A+TG+GKTAAF +P+L +
Sbjct: 4 FESLGLSEPIWRAAAERGYTSPTPIQEQAIPVVMSGVDLLAGAQTGTGKTAAFAMPILHK 63
Query: 85 L-----NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139
L + VRALIL PTR+LA Q + GRY LR +L+GG + Q ++
Sbjct: 64 LAVTAGSASRAPSSVRALILVPTRELAAQVEASVQLYGRYLPLRSLVLIGGVKINPQMQK 123
Query: 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSEN 199
L ++ DI++ATPGRL+ H+ + + L VE +V DEAD + MGF + +IL L +
Sbjct: 124 LRRSVDILVATPGRLLDHIQQ-RSVDLSHVEILVLDEADRMLDMGFIRDIRRILAVLPKK 182
Query: 200 RQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI 259
RQ LLFSAT + A L +P V + + ++ F + Q+ K L ++I
Sbjct: 183 RQNLLFSATFSPEIRGLADGLLNNPTSVEVAARNATADNVAQRVFAVDQDRKRELLSHLI 242
Query: 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319
EH Q L+F TKH + L ++G++ +GD Q AR ++ F+ K
Sbjct: 243 EEHQWG--QVLVFTRTKHGADRLARHLSQDGMQAMAIHGDKSQGARTRALAEFKEGKVQV 300
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLL 379
L+ TD+AARGIDI L +V+N++ P P+ +VHR+GR RAG G A S V+SE+ L
Sbjct: 301 LVATDIAARGIDISELPHVVNFELPHVPEDYVHRIGRTGRAGNNGQAVSLVSSEERKQLQ 360
Query: 380 DLHLFLSK 387
D+ L +
Sbjct: 361 DVEKLLRR 368
>gi|425769747|gb|EKV08230.1| ATP-dependent RNA helicase , putative [Penicillium digitatum Pd1]
gi|425771396|gb|EKV09840.1| ATP-dependent RNA helicase , putative [Penicillium digitatum PHI26]
Length = 494
Score = 258 bits (658), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 144/352 (40%), Positives = 208/352 (59%), Gaps = 5/352 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L L ++ A + GYK PTPIQ +++PL L G D++ +A TGSGKTA+F++P+LQ
Sbjct: 74 FKELGLIDSLCEACDKMGYKAPTPIQSESIPLALQGRDIIGLAETGSGKTASFVLPILQA 133
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L + PQ L+++PTR+LA Q + LG ++R + LVGG M Q L + P
Sbjct: 134 LMEK-PQP-FFGLVMAPTRELAYQISLACESLGATINVRSTTLVGGMDMVPQSIALGKKP 191
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
II+ATPGRL+ HL + SL++++++V DEAD L M F L KIL L R+T L
Sbjct: 192 HIIVATPGRLLDHLENTKGFSLRNLKFLVMDEADRLLDMDFGPILDKILKVLPRERRTFL 251
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR-QEEKHAALLYMIREHI 263
FSATL S + +A L +P V + + + + LR + K L+Y++ E I
Sbjct: 252 FSATLSSKVESLQRASLSNPARVSISSSKYATVETLQQTYILRPYKHKDIYLVYLLHEFI 311
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
Q +IF+ T H + + L R G +G M Q AR + +FR++ L+ T
Sbjct: 312 G--QSVIIFMRTVHETQRVAFLLRGLGFGAIPLHGQMSQSARLGALGKFRSKSREILVAT 369
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDM 375
DVAARG+DIP +D V+N+D P K ++HRVGR ARAG++GTA SFVT D+
Sbjct: 370 DVAARGLDIPSVDCVLNFDLPTDSKTYIHRVGRTARAGKSGTAISFVTQYDV 421
>gi|336394535|ref|ZP_08575934.1| putative ATP-dependent RNA helicase [Lactobacillus farciminis KCTC
3681]
Length = 507
Score = 258 bits (658), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 150/450 (33%), Positives = 248/450 (55%), Gaps = 14/450 (3%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L+L P + A+ G++ TPIQ +T+PL+++GADV+ A+TG+GKTAAF +P+L
Sbjct: 3 FKELDLDPRLLSAVDEAGFEETTPIQAQTIPLVMTGADVIGQAQTGTGKTAAFGLPLLNA 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
++ ++ALI+SPTR+LA+QT + LG+ +++ + GG + Q L +P
Sbjct: 63 VDTQ--SSDIQALIISPTRELAIQTQEELYRLGKEKKVKVQSVYGGSDIRRQIRALKNHP 120
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
I++ TPGR++ H++ + L +V+ VV DEAD + MGF E + IL + QTLL
Sbjct: 121 QIVVGTPGRMLDHINR-HTLKLHNVKTVVLDEADEMLDMGFVEDIESILSNVPNKHQTLL 179
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P + + A + +P +V++ + ++ F R EK + + +
Sbjct: 180 FSATMPKPIMKIADKFMNEPEVVKIKSKELTADKIEQYFVKARDYEKFDLMTRLF--DVQ 237
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
+ + LIF TK V+ L + G +GD+ QD R + +F+A K FL+ TD
Sbjct: 238 APELALIFGRTKRRVDELTRGLQARGYNAEGIHGDLSQDKRTSVLRKFKAGKLDFLVATD 297
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
VAARG+DI + +V N+D P P +VHR+GR RAG +G + +FVT +M YL +
Sbjct: 298 VAARGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGHSGVSVTFVTPNEMGYLRTIENL 357
Query: 385 LSKPIR--AAPSEEEVLLDMDGVMSKIDQAIANG---ETIYGRFPQTVIDLVSDRVREII 439
K + A P+++EVL G + + Q I + + RF V +L+++ E I
Sbjct: 358 TKKRMEPLAPPTDKEVL---KGQLESVKQDIKDTLEHDKHLDRFDSAVQELLAEYSPEDI 414
Query: 440 DSSADLNSLQRTCTNAFRLYSKTKPLPSKE 469
S++ T ++ + +PLPS++
Sbjct: 415 ARIFLSESIKDAETVPVKI-APERPLPSRK 443
>gi|253575100|ref|ZP_04852439.1| ATP-dependent RNA helicase DeaD [Paenibacillus sp. oral taxon 786
str. D14]
gi|251845556|gb|EES73565.1| ATP-dependent RNA helicase DeaD [Paenibacillus sp. oral taxon 786
str. D14]
Length = 410
Score = 258 bits (658), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 138/369 (37%), Positives = 224/369 (60%), Gaps = 7/369 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ LNL P++ +A++++ Y PTPIQ++ +P ILSG D++ A+TG+GKTAAF +P LQ
Sbjct: 3 FKELNLIPSILKALEQENYTAPTPIQQQAIPPILSGQDLLGCAQTGTGKTAAFAIPTLQL 62
Query: 85 LNQH-VPQGG---VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
L++ P+ G +RAL+++PTR+LALQ + G+Y L+ +++ GG S + Q L
Sbjct: 63 LHKDGAPRAGRRNIRALVITPTRELALQIYENFCAYGKYLPLKCAVIFGGVSQKPQEAAL 122
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
+ DI++ATPGRL + L + + + LK+VE ++ DEAD + MGF + KI+ + R
Sbjct: 123 QKGVDILVATPGRL-NDLMQQKLIDLKNVELLILDEADRMLDMGFIHDVKKIIAKTPSQR 181
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSAT+P A+A+ A + LR+P V + + + + + + K L+++++
Sbjct: 182 QTLLFSATMPDAIAQMADSILRNPVKVEITPVSSTVDTIGQYLYYVDKGNKRDLLIHLLK 241
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
+ S + ++F TKH + L + + +GD Q AR+ + F+ R L
Sbjct: 242 D--PSIESAIVFTRTKHGADRLVRHLTKAQVSAKAIHGDKSQGARQTALQDFKNRTLRVL 299
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLD 380
+ TD+AARGIDI L +VIN++ P P+ +VHR+GR RAG++G A SF ++ YL D
Sbjct: 300 VATDIAARGIDIDELSHVINYELPNIPETYVHRIGRTGRAGQSGVAISFCDFDEKPYLAD 359
Query: 381 LHLFLSKPI 389
+ + K I
Sbjct: 360 IEKLIGKRI 368
>gi|393722546|ref|ZP_10342473.1| DEAD/DEAH box helicase, partial [Sphingomonas sp. PAMC 26605]
Length = 480
Score = 258 bits (658), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 135/360 (37%), Positives = 221/360 (61%), Gaps = 6/360 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L L+ + RA++ KGY PTPIQ++++P++L G D++ +A+TG+GKTAAF++P +Q
Sbjct: 3 FAQLGLAEPLVRALEAKGYTTPTPIQKQSIPILLEGGDLLGIAQTGTGKTAAFVLPSIQH 62
Query: 85 L---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L + V R L+L+PTR+LA Q + +E G+++ + ++ + GG S+ +++A
Sbjct: 63 LVNNEKRVLPTHCRMLVLAPTRELASQIAESAREYGKFSKMSVATVFGGTSINKNRQDMA 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ DI++ATPGRL+ L E +SL +E +V DEAD + +GF L KI+ L + RQ
Sbjct: 123 RGVDILVATPGRLLD-LIEQRFVSLAMLEILVLDEADQMLDLGFIHALRKIVRMLPKQRQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
TL FSAT+P+A+ E A L DP V++ + + + L Q EK A L ++R+
Sbjct: 182 TLFFSATMPNAIRELANQFLNDPQTVKVAPTSSTAERVDQFVTFLNQGEKQALLTILLRD 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
++ L+F TKH + + L G++ + +G+ Q R+ ++ F++ K L+
Sbjct: 242 E--KVERALVFTRTKHGADRVVKLLAANGMDSNAIHGNKSQPQRERALAEFKSGKAKVLV 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TD+AARGID+ + +V N++ P P+ +VHR+GR ARAG +GTA SFV ++ YL D+
Sbjct: 300 ATDIAARGIDVSGVSHVFNFELPNVPEQYVHRIGRTARAGASGTAISFVADDERTYLRDI 359
>gi|266619246|ref|ZP_06112181.1| ATP-dependent RNA helicase RhlE [Clostridium hathewayi DSM 13479]
gi|288869241|gb|EFD01540.1| ATP-dependent RNA helicase RhlE [Clostridium hathewayi DSM 13479]
Length = 432
Score = 258 bits (658), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 146/370 (39%), Positives = 223/370 (60%), Gaps = 9/370 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L LS + +A++ KGY P+PIQ K +P +L+G DV+ A+TG+GKTAAF +P++Q
Sbjct: 3 FKDLQLSAPLLKALEEKGYTTPSPIQEKAIPHVLAGKDVLGCAQTGTGKTAAFALPIIQN 62
Query: 85 L----NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
L ++ + +R+LIL+PTR+LALQ + KE G +T +R +++ GG S Q +EL
Sbjct: 63 LMRPSDKKHSKRVIRSLILTPTRELALQIAENFKEYGSHTPVRCAVIFGGVSAVPQIKEL 122
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
+ DI++ATPGRL + + E +SL VE V DEAD + MGF + KI+ L +
Sbjct: 123 QRGIDILVATPGRLNDLIHQGE-ISLSHVEMFVLDEADRMLDMGFIHDVKKIISLLPVKK 181
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI- 259
QTLLFSAT+P + + L +P +V + + I ++ + + + +E K A L++++
Sbjct: 182 QTLLFSATMPPEIQALTEKLLHNPAVVEVTPVSSIVDLIEDSLYYVDKENKRALLVHLLK 241
Query: 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319
RE I+S TL+F TKH + + + + + +GD Q AR+ +S+F+A
Sbjct: 242 REAITS---TLVFTRTKHGADRMAKFLTKNRINAAAIHGDKSQGARQKALSQFKAGTVRV 298
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLL 379
L TD+AARGIDI L VIN+D P P+ +VHR+GR RAG G A SF E+ AY+
Sbjct: 299 LAATDIAARGIDIEELSCVINFDLPNVPETYVHRIGRTGRAGLGGRAISFSDIEEKAYVE 358
Query: 380 DLHLFLSKPI 389
D+ + K I
Sbjct: 359 DIEKLIGKKI 368
>gi|302795308|ref|XP_002979417.1| hypothetical protein SELMODRAFT_110816 [Selaginella moellendorffii]
gi|300152665|gb|EFJ19306.1| hypothetical protein SELMODRAFT_110816 [Selaginella moellendorffii]
Length = 749
Score = 257 bits (657), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 142/363 (39%), Positives = 217/363 (59%), Gaps = 10/363 (2%)
Query: 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPM 81
+ F LN+S + RA GY+ PTPIQ +PL L+G D+ A TGSGKTAAF +P+
Sbjct: 116 ASSFIELNVSRPLLRACDALGYRQPTPIQAACIPLALAGRDICGSAVTGSGKTAAFALPI 175
Query: 82 LQRL---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138
L+RL + +P +R LI++PTR+LA+Q ++L ++TD+R SL+VGG S + Q
Sbjct: 176 LERLLFRPRRIP--AIRVLIITPTRELAVQLHSMIEKLAQFTDIRCSLVVGGLSSKVQEV 233
Query: 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198
L +PDI++ATPGR++ HL + + L+ + +V DEAD L +GF E++H+++
Sbjct: 234 ALRTHPDIVVATPGRMIDHLRNTQSVGLEELAILVLDEADRLLELGFREEIHELVKLCPS 293
Query: 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR---QEEKHAAL 255
RQT+LFSAT+ ++E K L+ P + D T+ L +R + +K A +
Sbjct: 294 RRQTMLFSATMTDEVSELIKLSLKSPVRLSADPSTERPSTLTEEVIRIRAGHEGDKEAIV 353
Query: 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRAR 315
L + + S +T+IF TK L +LF GL+ + +G++ Q R + FR +
Sbjct: 354 LSLCSRSLKS--KTIIFSGTKVEAHRLKILFGLSGLKSAELHGNLTQAQRLEALEAFRKQ 411
Query: 316 KTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDM 375
+ FLI TDVAARG+DI +++VIN + P + K +VHRVGR ARAGR G + + +T +D
Sbjct: 412 EVDFLIATDVAARGLDIIGVESVINLECPKEIKTYVHRVGRTARAGRHGRSVTLMTEQDR 471
Query: 376 AYL 378
L
Sbjct: 472 LLL 474
>gi|336471127|gb|EGO59288.1| ATP-dependent rRNA helicase rrp-3 [Neurospora tetrasperma FGSC
2508]
gi|350292214|gb|EGZ73409.1| ATP-dependent rRNA helicase rrp-3 [Neurospora tetrasperma FGSC
2509]
Length = 515
Score = 257 bits (657), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 152/390 (38%), Positives = 225/390 (57%), Gaps = 8/390 (2%)
Query: 14 EKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGK 73
E+++ ++ F+ L + + A +R GYK PTPIQ +++PL L D++ +A TGSGK
Sbjct: 81 EQEEVETVKKTFKDLGIVDALCEACERLGYKNPTPIQEQSIPLALQNRDIIGIAETGSGK 140
Query: 74 TAAFLVPMLQRL-NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
TAAF +P+LQ L ++ P + AL+L+PTR+LA Q + + LG LR +L++GG
Sbjct: 141 TAAFALPILQALLDKPAP---LFALVLAPTRELAAQIAQAFEALGSLISLRCALILGGMD 197
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
M +Q L + P +I+ATPGRL+ HL + + SL+S++Y+V DEAD L M F L KI
Sbjct: 198 MVTQAIALGKKPHVIVATPGRLLDHLEKTKGFSLRSMQYLVMDEADRLLDMDFGPILEKI 257
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKIS-PDLKLAFFTLRQEEK 251
L L R+T LFSAT+ S + +A LRDP V + + + LK + + K
Sbjct: 258 LKFLPRERRTFLFSATMSSKVESLQRASLRDPLKVSVSSNKYATVSTLKSNYVFIPHMHK 317
Query: 252 HAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSR 311
L+Y+ E + Q +IF T + + +L R G+ +G + Q AR +++
Sbjct: 318 DTYLVYLCNEF--AGQTIIIFTRTVLETQRIAILLRTLGMGAIPLHGGLSQSARLGALNK 375
Query: 312 FRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVT 371
FRA L+ TDVAARG+DIP +D VIN D P K +VHRVGR ARAG++G A S VT
Sbjct: 376 FRAGSREILVATDVAARGLDIPNVDCVINHDLPQDSKTYVHRVGRTARAGKSGHAISIVT 435
Query: 372 SEDMAYLLDLHLFLSKPIRAAPSE-EEVLL 400
D+ L + L + P E +EV++
Sbjct: 436 QYDLEIWLRIEAALGHKLDEYPLEKDEVMV 465
>gi|373455480|ref|ZP_09547312.1| hypothetical protein HMPREF9453_01481 [Dialister succinatiphilus
YIT 11850]
gi|371934839|gb|EHO62616.1| hypothetical protein HMPREF9453_01481 [Dialister succinatiphilus
YIT 11850]
Length = 504
Score = 257 bits (657), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 130/354 (36%), Positives = 213/354 (60%), Gaps = 5/354 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L ++P + +A++ G++ P+PIQ+ +P+ L+G D++ A+TG+GKTAAF +P+L+R
Sbjct: 5 FKELGIAPEILKAVEDMGFEEPSPIQKAAIPIALTGKDLIGQAQTGTGKTAAFGIPILER 64
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
++ P G +A++LSPTR+LA+Q+ + L +Y + + GG +E QF+ L ++P
Sbjct: 65 IDTSKP--GPQAVVLSPTRELAIQSAEEINHLAQYLPIHALPIYGGQDIERQFKALRKHP 122
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
+II+ATPGRLM H+ + L V+ +V DE D + MGF + + IL + E RQT+
Sbjct: 123 NIIVATPGRLMDHMKR-GTIDLSHVQVLVLDEGDEMVDMGFIDDIRTILAGIPEERQTMF 181
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P + + A+ L+DP LV++ T ++ + L +K AL ++ +
Sbjct: 182 FSATMPEPIRQLAETFLKDPELVKIKAATVTIDLIEQEYIELPDRQKFDALCRLL--DMQ 239
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
+ ++FV TK + + ++ G +GD+ Q R V +F+ L+ TD
Sbjct: 240 DPELAIVFVRTKRRCDEVTEALKKRGYMAEGLHGDLSQQKRDTVVRQFKEGTIDILVATD 299
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
VAARG+DI + +V N+D P P+I+VHRVGR RAG+TG A +FV S +M L
Sbjct: 300 VAARGLDISGVTHVYNFDMPQDPEIYVHRVGRTGRAGKTGLAVTFVISREMGQL 353
>gi|336392377|ref|ZP_08573776.1| putative ATP-dependent RNA helicase [Lactobacillus coryniformis
subsp. torquens KCTC 3535]
Length = 515
Score = 257 bits (657), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 144/395 (36%), Positives = 231/395 (58%), Gaps = 10/395 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L L P + +A++R+G++ TPIQ +T+PL ++G DV+ A+TG+GKTAAF + +LQ+
Sbjct: 3 FTDLGLDPELLKAVRRQGFEEATPIQAETIPLAVTGVDVIGQAQTGTGKTAAFGLAILQK 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
++ P V+ALI+SPTR+LA+QT + LG+ +++ + GG + Q L +P
Sbjct: 63 IDLENP--NVQALIISPTRELAVQTQEELYRLGQDKKVKVQAVYGGADIGRQIRSLKDHP 120
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
II+ TPGRL H++ + L V+ +V DEAD + MGF E + KI+ Q+ + RQTLL
Sbjct: 121 QIIVGTPGRLQDHINR-RTIRLDHVQVLVLDEADEMLDMGFLEDIEKIVQQVPDTRQTLL 179
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQE-EKHAALLYMIREHI 263
FSAT+P+A+ + A + DP +V++ +++ DL +F +E EK + + +
Sbjct: 180 FSATIPAAIRKIADRFMHDPKMVQIKA-KELTADLLDQYFVQTKEFEKFDVMTRLF--DV 236
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+ T++F TK V+ L+ R G +GD+ Q R + F+A + L+ T
Sbjct: 237 QQPELTIVFGRTKRRVDELSKGLRARGYNAEGIHGDLSQQKRMSVLRSFKAGRLDILVAT 296
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHL 383
DVAARG+DI + +V N+D P P +VHRVGR ARAG GT+ +FVT +M YL +
Sbjct: 297 DVAARGLDISGVTHVYNYDVPQDPDSYVHRVGRTARAGHKGTSITFVTPNEMGYLRTIEK 356
Query: 384 FLS---KPIRAAPSEEEVLLDMDGVMSKIDQAIAN 415
+P++A ++E + + + I + I N
Sbjct: 357 LTRLKMQPLKAPTAKEALQGQLSSAIESIQELIDN 391
>gi|209518298|ref|ZP_03267123.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
gi|209501217|gb|EEA01248.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
Length = 443
Score = 257 bits (657), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 137/369 (37%), Positives = 212/369 (57%), Gaps = 7/369 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+SL LS + RA+ GY PTPIQ + +P +L G D++A A+TG+GKTA F +P+LQR
Sbjct: 3 FDSLGLSEPLVRAVNELGYTSPTPIQTQAIPAVLDGGDLLAGAQTGTGKTAGFTLPILQR 62
Query: 85 LNQHVPQGG----VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
LN P G VRALIL+PTR+LA Q + + G+Y L+ +++ GG + Q + L
Sbjct: 63 LNSMPPAAGGKRVVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIDAL 122
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
+ DI++ATPGRL+ H+ + + + L +E +V DEAD + MGF + ++L +L R
Sbjct: 123 KRGVDIVVATPGRLLDHMQQ-KTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPKR 181
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
Q LLFSAT + A + L P L+ + + + + ++ K L ++IR
Sbjct: 182 QNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHLIR 241
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
+H + Q L+F TKH L ++G+ +G+ Q AR ++ F+ L
Sbjct: 242 QH--NWFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKDGTLQVL 299
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLD 380
+ TD+AARGIDI L +V+N+D P P+ +VHR+GR RAG TG A S V +++ L D
Sbjct: 300 VATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLLKD 359
Query: 381 LHLFLSKPI 389
+ + +P+
Sbjct: 360 IEKLIKRPV 368
>gi|325191409|emb|CCA26186.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
Length = 463
Score = 257 bits (657), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 142/380 (37%), Positives = 228/380 (60%), Gaps = 8/380 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE L + + AI G+ P+ IQ++ +P L+G D++ +A TGSGKT AF++P+LQ
Sbjct: 31 FEQLGVDATLCEAIASLGWSKPSKIQQEAIPHGLAGRDLIGLAETGSGKTGAFVIPILQS 90
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L + PQ + AL+L+PTR+LA Q + + LG L+ + +VGG M +Q LA+ P
Sbjct: 91 LLRS-PQR-LYALVLAPTRELAYQISEQFEALGASIGLKCACVVGGIDMMNQQIALARKP 148
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
IIIATPGRL+ HL + SL++++++V DEAD + M F E++++I+ + R T L
Sbjct: 149 HIIIATPGRLVDHLENTKGFSLRTIKFLVLDEADRMLSMDFEEEINQIVQLMPSERNTYL 208
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISP--DLKLAFFTLRQEEKHAALLYMIREH 262
FSAT+ S +A+ +A L +P +++++ K + +L+ + + + K L Y++ E
Sbjct: 209 FSATMTSKVAKLQRASLLNP--IKIEITHKFATPENLRQHYLFIPAKFKDCYLSYILNE- 265
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
+ Q LIF ST + + + ++ R G + +G M Q R +++F+A+ L+
Sbjct: 266 -VAGQSILIFASTCNGTQKVTLMLRNLGFQAICLHGQMSQPNRLGALNKFKAKTRKILVC 324
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
TDVA+RG+DIP +D V+N+D P K ++HRVGR ARAGR G A SFVT D+ +
Sbjct: 325 TDVASRGLDIPSVDVVMNYDIPTHGKDYIHRVGRTARAGRAGIAVSFVTQYDVELYQRIE 384
Query: 383 LFLSKPIRAAPSEEEVLLDM 402
L K + A P +E+ +L M
Sbjct: 385 FLLGKKLDAYPCDEQTVLIM 404
>gi|85082449|ref|XP_956915.1| ATP-dependent rRNA helicase RRP3 [Neurospora crassa OR74A]
gi|74662479|sp|Q7RY59.1|RRP3_NEUCR RecName: Full=ATP-dependent rRNA helicase rrp-3
gi|28917996|gb|EAA27679.1| ATP-dependent rRNA helicase RRP3 [Neurospora crassa OR74A]
Length = 515
Score = 257 bits (657), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 152/390 (38%), Positives = 225/390 (57%), Gaps = 8/390 (2%)
Query: 14 EKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGK 73
E+++ ++ F+ L + + A +R GYK PTPIQ +++PL L D++ +A TGSGK
Sbjct: 81 EQEEVETVKKTFKDLGIVDALCEACERLGYKNPTPIQEQSIPLALQNRDIIGIAETGSGK 140
Query: 74 TAAFLVPMLQRL-NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
TAAF +P+LQ L ++ P + AL+L+PTR+LA Q + + LG LR +L++GG
Sbjct: 141 TAAFALPILQALLDKPAP---LFALVLAPTRELAAQIAQAFEALGSLISLRCALILGGMD 197
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
M +Q L + P +I+ATPGRL+ HL + + SL+S++Y+V DEAD L M F L KI
Sbjct: 198 MVTQAIALGKKPHVIVATPGRLLDHLEKTKGFSLRSMQYLVMDEADRLLDMDFGPILEKI 257
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKIS-PDLKLAFFTLRQEEK 251
L L R+T LFSAT+ S + +A LRDP V + + + LK + + K
Sbjct: 258 LKFLPRERRTFLFSATMSSKVESLQRASLRDPLKVSVSSNKYATVSTLKSNYVFIPHMHK 317
Query: 252 HAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSR 311
L+Y+ E + Q +IF T + + +L R G+ +G + Q AR +++
Sbjct: 318 DTYLVYLCNEF--AGQTIIIFTRTVLETQRIAILLRTLGMGAIPLHGGLSQSARLGALNK 375
Query: 312 FRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVT 371
FRA L+ TDVAARG+DIP +D VIN D P K +VHRVGR ARAG++G A S VT
Sbjct: 376 FRAGSREILVATDVAARGLDIPNVDCVINHDLPQDSKTYVHRVGRTARAGKSGHAISIVT 435
Query: 372 SEDMAYLLDLHLFLSKPIRAAPSE-EEVLL 400
D+ L + L + P E +EV++
Sbjct: 436 QYDLEIWLRIEAALGHKLDEYPLEKDEVMV 465
>gi|339449340|ref|ZP_08652896.1| DEAD/DEAH box helicase domain-containing protein [Lactobacillus
fructivorans KCTC 3543]
Length = 496
Score = 257 bits (657), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 142/401 (35%), Positives = 237/401 (59%), Gaps = 21/401 (5%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L LS ++ +AI++ G+ PTPIQ +T+PL+L G DV+ A+TG+GKTAAF +P+LQ
Sbjct: 3 FKDLGLSDSLLKAIEKSGFDEPTPIQAQTIPLLLKGQDVIGQAQTGTGKTAAFALPILQE 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
++ + P V+AL++SPTR+LA+QT K + LG R+ ++ GG + Q +L + P
Sbjct: 63 IDLNNPD--VQALVISPTRELAIQTQKEMQRLGGVEGARVQVVYGGSDIRQQIRDLKKTP 120
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
I++ TPGR++ H++ + L V+Y+V DEAD + MGF + + I+ + +RQTLL
Sbjct: 121 QIVVGTPGRILDHINR-RTLKLGHVKYLVLDEADEMLNMGFLDDIESIIKNIPSDRQTLL 179
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFT-LRQEEKHAALLYMIREHI 263
FSAT+P+ + +RDP + + +++ DL ++ ++ EK + + +
Sbjct: 180 FSATMPAPIKRVGVQFMRDPKQITVK-SKELTTDLVDQYYVKVKDNEKFDTMTRLF--DV 236
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+ + T++F TK V+ ++ G + +GD+ Q R ++ F+ K +L+ T
Sbjct: 237 QTPKVTIVFCRTKRRVDEVSKGLIARGYRAAGLHGDLTQKRRTQIMNEFKNDKINYLVAT 296
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHL 383
DVAARGID+ + V N+D P P+ +VHR+GR RAG GT+ +FVT +M+YL +
Sbjct: 297 DVAARGIDVSGVTYVYNFDIPQDPESYVHRIGRTGRAGHHGTSVTFVTPNEMSYLRGIEK 356
Query: 384 FLSK----PIRAAPSEEEVLL--------DMDGVMSKIDQA 412
L+K P++ PSE+E L D++ ++ K D A
Sbjct: 357 -LTKVRMLPLK-PPSEDEALAGQLKFAENDIEKLVQKTDTA 395
>gi|429122441|ref|ZP_19183020.1| ATP-dependent RNA helicase RhlE [Cronobacter sakazakii 680]
gi|426323043|emb|CCK13757.1| ATP-dependent RNA helicase RhlE [Cronobacter sakazakii 680]
Length = 467
Score = 257 bits (657), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 144/369 (39%), Positives = 213/369 (57%), Gaps = 7/369 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+SL LSP + RAI +GY PTPIQR+ +P++LSG D++A A+TG+GKTA F +P+LQR
Sbjct: 3 FDSLGLSPEILRAIAEQGYNEPTPIQRQAIPVVLSGKDLMASAQTGTGKTAGFTLPLLQR 62
Query: 85 L--NQHVPQG--GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
L NQ P+G VRALIL+PTR+LA Q + +E +Y D+R ++ GG S+ Q +L
Sbjct: 63 LTANQPHPKGRRPVRALILTPTRELAAQVGENVREYSKYLDIRSLVVFGGVSINPQMMKL 122
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
D++IATPGRL+ L + L VE +V DEAD + MGF + ++L +L R
Sbjct: 123 RGGVDVLIATPGRLLD-LEHQNAVKLDQVEVLVLDEADRMLDMGFIHDIRRVLAKLPPKR 181
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
Q LLFSAT + A+ L +P V + S + + ++ K L Y+I
Sbjct: 182 QNLLFSATFSDDIKSLAEKLLHNPEEVEVARRNTASEQVTQHVHFVDKKRKRELLSYLIG 241
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
+ + QQ L+F TKH L ++G+ + +G+ Q AR ++ F+ L
Sbjct: 242 D--GNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKTGGIRVL 299
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLD 380
+ TD+AARG+DI L +V+N++ P P+ +VHR+GR RA TG A S V ++ L D
Sbjct: 300 VATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRD 359
Query: 381 LHLFLSKPI 389
+ L + I
Sbjct: 360 IERLLKREI 368
>gi|115492615|ref|XP_001210935.1| hypothetical protein ATEG_00849 [Aspergillus terreus NIH2624]
gi|121742543|sp|Q0CZN5.1|DRS1_ASPTN RecName: Full=ATP-dependent RNA helicase drs1
gi|114197795|gb|EAU39495.1| hypothetical protein ATEG_00849 [Aspergillus terreus NIH2624]
Length = 821
Score = 257 bits (657), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 147/373 (39%), Positives = 221/373 (59%), Gaps = 18/373 (4%)
Query: 14 EKQKKKSKSGG----FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMART 69
E++K K ++ G F+ NLS + R + + PTPIQRKT+P+ L G D+V A T
Sbjct: 291 EEEKTKEQADGAQRSFQEFNLSRPILRGLAAVNFTNPTPIQRKTIPVALLGKDIVGSAVT 350
Query: 70 GSGKTAAFLVPMLQRL---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISL 126
GSGKTAAF+VP+L+RL + VP R IL PTR+LA+Q +L YTD+
Sbjct: 351 GSGKTAAFVVPILERLLFRPRKVPTS--RVAILMPTRELAVQCYNVATKLATYTDITFCQ 408
Query: 127 LVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFA 186
LVGG S+ Q L + PD+IIATPGR + H+ ++ ++E +V DEAD + GFA
Sbjct: 409 LVGGFSLREQENILKKRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFA 468
Query: 187 EQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLA--FF 244
++L++IL + ++RQT+LFSAT+ + + + GL P VRL VD+K + L L F
Sbjct: 469 DELNEILTTIPKSRQTMLFSATMTDTVDKLIRVGLNRP--VRLMVDSKKNTSLTLVQEFV 526
Query: 245 TL---RQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMD 301
L R++++ LLY+ +E + + ++F K + ++F GL+ + +G M
Sbjct: 527 RLRPGREDKRLGYLLYLCKEIYTG--RVIVFFRQKREAHRVRIVFGLLGLKAAELHGSMS 584
Query: 302 QDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAG 361
Q+ R V FR K FL+ TD+A+RG+DI ++ VIN++ P +I++HRVGR ARAG
Sbjct: 585 QEQRIKSVENFRDGKVAFLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAG 644
Query: 362 RTGTAFSFVTSED 374
R+G A + D
Sbjct: 645 RSGRACTIAAEPD 657
>gi|344939864|ref|ZP_08779152.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
SV96]
gi|344261056|gb|EGW21327.1| DEAD/DEAH box helicase domain protein [Methylobacter tundripaludum
SV96]
Length = 441
Score = 257 bits (657), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 140/369 (37%), Positives = 219/369 (59%), Gaps = 7/369 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L L+ + +A+ +GY PTP+Q+K +PLIL G DV+A A+TG+GKTA+F +P+LQR
Sbjct: 3 FAQLGLADELLKAVADQGYVTPTPVQQKAIPLILEGKDVLAGAQTGTGKTASFTLPLLQR 62
Query: 85 LNQ-HVPQGG---VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
L + H P VRALIL PTR+LA Q + K G + +VGG S+ Q +L
Sbjct: 63 LAENHDPHQKPRRVRALILVPTRELAAQVYESVKTYGAHLPFHAEAVVGGASIGIQTRQL 122
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
+ DI++ATPGRL+ H+ + +++L +VE +V DEAD + MGF + +++ + + R
Sbjct: 123 RRGCDIVVATPGRLIDHVQQ-RNINLSNVEVLVLDEADRMLDMGFLPDIKQLMALIPKKR 181
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
Q+LLFSAT+P+A+ A L +P V + + ++ + + +E K L Y+I
Sbjct: 182 QSLLFSATVPNAIKSLAAQLLNNPVEVEVAKQNATAENVAERVYGIGREYKRELLSYLIG 241
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
+ + +Q L+FV TKH + L E+G+ + +GD Q AR + +F+ K L
Sbjct: 242 SN--NWKQVLVFVRTKHGADRLEKQLIEDGIRTAALHGDKTQGARNKALEQFKTGKVSVL 299
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLD 380
+ TD+AARG+DI L +V+N+D P P+ ++HR+GR RAG G A S V E+ L++
Sbjct: 300 VATDIAARGLDIDDLPHVVNFDVPQVPEDYIHRIGRTGRAGANGEALSLVCPEEAWMLVE 359
Query: 381 LHLFLSKPI 389
+ L + I
Sbjct: 360 IEKLLKRQI 368
>gi|251773001|gb|EES53557.1| putative ATP-dependent helicase [Leptospirillum ferrodiazotrophum]
Length = 472
Score = 257 bits (657), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 150/365 (41%), Positives = 212/365 (58%), Gaps = 7/365 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE+L L+P++ RA+ ++ PTPIQ++T+P I+ G DV+ +A+TGSGKT FL+P L R
Sbjct: 3 FETLGLNPDLLRALSDLKHESPTPIQKQTIPPIIEGRDVLGVAQTGSGKTGGFLLPSLHR 62
Query: 85 LNQHVPQGGVR--ALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
N+ R L+LSPTR+LA Q + +E G+Y R LLVGG M Q + L +
Sbjct: 63 -NKRAQGNRTRHQILVLSPTRELAGQIERSAREYGKYLRSRTVLLVGGTDMRRQIDFLRR 121
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
D++IATPGRL+ H+ + ++L V VV DEAD + MGF + IL L RQT
Sbjct: 122 PWDLVIATPGRLIDHM-QRGTINLSHVHTVVLDEADRMLDMGFLPDVETILKALHPERQT 180
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDT--KISPDLKLAFFTLRQEEKHAALLYMIR 260
LLF+ATLP+ + K +DP L+RL+ + +S D ++ + +K L ++
Sbjct: 181 LLFTATLPARIQMLTKTYQKDPVLIRLETASAPPVSIDQEVVAIS-HGAQKWGLLKTILT 239
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
E +++ QTLIF TK E L EG +GD Q R +S+FRA +T L
Sbjct: 240 EPQTTEGQTLIFTRTKRGAEDLANQLLAEGFPSDALHGDKSQSQRNRVLSKFRAGQTRIL 299
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLD 380
+ TDVAARG+DI + VIN+D P P+ +VHR+GR RAGR+G A SF D L D
Sbjct: 300 VATDVAARGLDIDTVTCVINYDLPQSPEDYVHRIGRTGRAGRSGRAISFCHPADRNLLRD 359
Query: 381 LHLFL 385
+ L
Sbjct: 360 IERLL 364
>gi|221068202|ref|ZP_03544307.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
gi|220713225|gb|EED68593.1| DEAD/DEAH box helicase domain protein [Comamonas testosteroni KF-1]
Length = 613
Score = 257 bits (657), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 136/377 (36%), Positives = 221/377 (58%), Gaps = 9/377 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE LNL+P + +A++ +GY+ PTPIQ + +PL+L+G D++A A+TG+GKTAAF +PMLQR
Sbjct: 3 FEELNLAPAILKAVQEQGYENPTPIQAQAIPLVLAGHDLLAGAQTGTGKTAAFTLPMLQR 62
Query: 85 L-NQHVPQG-----GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138
L + P+ G+R L+L+PTR+LA Q + + +Y D+ +++ GG M+ Q
Sbjct: 63 LASGTAPKNKFGGKGIRTLVLTPTRELAAQVEENLRGYAKYLDITSTVIFGGVGMKPQIA 122
Query: 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198
+ + D+++ATPGRL+ L+ M L +VE ++ DEAD + MGF + K+L + +
Sbjct: 123 RIEKGVDVLVATPGRLLD-LAGQGFMDLSTVEMLILDEADRMLDMGFIHDVKKVLALVPK 181
Query: 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258
++Q+LLFSAT + E A LR+P +++ +K + + +K LL++
Sbjct: 182 DKQSLLFSATFSDEIRELANGLLRNPQSIQVTPRNTTVQRIKQVIHPVGRGKKKQVLLHI 241
Query: 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
I+E+ S Q L+F TK + + G+ +G+ Q AR + F+ +
Sbjct: 242 IQENNWS--QVLVFTRTKFGANNVAEYLTKNGVSAMALHGNKSQSARTQALEGFKTGELR 299
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
L+ TD+AARGIDI L NV+N++ P + +VHR+GR RAGR G A S V ++ ++
Sbjct: 300 ALVATDIAARGIDIDELPNVVNYEIPNISEDYVHRIGRTGRAGREGNAVSLVCMDEEGFM 359
Query: 379 LDLHLFLSKPIRAAPSE 395
+D+ F + I P E
Sbjct: 360 MDIERFTKQEIPVQPIE 376
>gi|264677685|ref|YP_003277591.1| hypothetical protein CtCNB1_1549 [Comamonas testosteroni CNB-2]
gi|262208197|gb|ACY32295.1| hypothetical conserved protein [Comamonas testosteroni CNB-2]
Length = 616
Score = 257 bits (657), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 136/377 (36%), Positives = 221/377 (58%), Gaps = 9/377 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE LNL+P + +A++ +GY+ PTPIQ + +PL+L+G D++A A+TG+GKTAAF +PMLQR
Sbjct: 6 FEELNLAPAILKAVQEQGYENPTPIQAQAIPLVLAGHDLLAGAQTGTGKTAAFTLPMLQR 65
Query: 85 L-NQHVPQG-----GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138
L + P+ G+R L+L+PTR+LA Q + + +Y D+ +++ GG M+ Q
Sbjct: 66 LASGTAPKNKFGGKGIRTLVLTPTRELAAQVEENLRGYAKYLDITSTVIFGGVGMKPQIA 125
Query: 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198
+ + D+++ATPGRL+ L+ M L +VE ++ DEAD + MGF + K+L + +
Sbjct: 126 RIEKGVDVLVATPGRLLD-LAGQGFMDLSTVEMLILDEADRMLDMGFIHDVKKVLALVPK 184
Query: 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258
++Q+LLFSAT + E A LR+P +++ +K + + +K LL++
Sbjct: 185 DKQSLLFSATFSDEIRELANGLLRNPQSIQVTPRNTTVQRIKQVIHPVGRGKKKQVLLHI 244
Query: 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
I+E+ S Q L+F TK + + G+ +G+ Q AR + F+ +
Sbjct: 245 IQENNWS--QVLVFTRTKFGANNVAEYLTKNGVSAMALHGNKSQSARTQALEGFKTGELR 302
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
L+ TD+AARGIDI L NV+N++ P + +VHR+GR RAGR G A S V ++ ++
Sbjct: 303 ALVATDIAARGIDIDELPNVVNYEIPNISEDYVHRIGRTGRAGREGNAVSLVCMDEEGFM 362
Query: 379 LDLHLFLSKPIRAAPSE 395
+D+ F + I P E
Sbjct: 363 MDIERFTKQEIPVQPIE 379
>gi|158514834|sp|A3LS22.3|RRP3_PICST RecName: Full=ATP-dependent rRNA helicase RRP3
Length = 484
Score = 257 bits (657), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 148/397 (37%), Positives = 219/397 (55%), Gaps = 8/397 (2%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K F L L P + AI++ + PTPIQ + +P L G D++ +A+TGSGKTAAF +P
Sbjct: 69 KFSTFSELKLVPELLEAIQQMKFSKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIP 128
Query: 81 MLQRL-NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139
+LQ L P G L+L+P R+LA Q + LG +R LVGG M Q +
Sbjct: 129 ILQSLWEAQTPYFG---LVLAPARELAYQIKETFDALGSTMGVRTVCLVGGMDMMDQARD 185
Query: 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSEN 199
L + P IIIATPGR+M HL + SLK ++Y V DEAD L + F L KIL Q+
Sbjct: 186 LMRKPHIIIATPGRIMDHLEHTKGFSLKMLKYFVMDEADKLLDLEFGPVLDKILKQIPSK 245
Query: 200 RQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI 259
R T LFSAT+ + + + +A L +P V + + + +L + + K+ L++++
Sbjct: 246 RTTYLFSATMTNKIEKLQRASLHNPVRVAVSSKYQTADNLIQSMMLVSDGYKNTYLIHLL 305
Query: 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319
E + + +IF T+ H + ++L R G +GD+ Q R +++F++
Sbjct: 306 NEFVG--KSIIIFARTRAHTQRTSILCRILGFSAVPLHGDLTQAQRLGSLNKFKSGTANI 363
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLL 379
LI TDVAARG+DIP +D VIN+D P K +VHRVGR ARAGR+G + S VT D+ L
Sbjct: 364 LIATDVAARGLDIPSVDVVINYDIPTDSKAYVHRVGRTARAGRSGKSISLVTQYDLEMYL 423
Query: 380 DLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANG 416
+ + K + PS + +L D + +D+A A
Sbjct: 424 RIEQSIQKKLPKDPSPPKAML--DALHVHVDRAYAEA 458
>gi|452845761|gb|EME47694.1| hypothetical protein DOTSEDRAFT_77927 [Dothistroma septosporum
NZE10]
Length = 1056
Score = 257 bits (657), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 139/365 (38%), Positives = 218/365 (59%), Gaps = 6/365 (1%)
Query: 14 EKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGK 73
E +K + F S+NLS + + + G+ PTPIQ K +P+ L G D+V A TGSGK
Sbjct: 522 ESKKTGPTATAFHSMNLSRPILKGLASVGFDKPTPIQMKAVPVALEGKDLVGGAVTGSGK 581
Query: 74 TAAFLVPMLQRLNQHVPQ--GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGD 131
TAAFL+P+L+RL + P+ R IL PTR+LALQ K+L +TD+ +++ VGG
Sbjct: 582 TAAFLIPILERL-LYRPKRTSMTRVAILMPTRELALQCFNVAKKLSAFTDISVAMAVGGL 640
Query: 132 SMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHK 191
S++ Q +EL PDI+IATPGR + + + ++E +V DEAD + GFA++L++
Sbjct: 641 SIKEQDKELKMRPDIVIATPGRFIDLERNYRSLDVGTIEILVLDEADRMLEEGFADELNE 700
Query: 192 ILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR--QE 249
IL ++ ++RQT+LFSAT+ + + + ++GL+ P + +D + L F LR +E
Sbjct: 701 ILSKIPKSRQTMLFSATMTTKVDDLVRSGLQRPVRLMVDAQKQTVSGLTQEFVRLRPGRE 760
Query: 250 EKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHV 309
+K L + E + +D + +IF K + V+F GL+ + +G M Q+ R +
Sbjct: 761 QKRLGYLMYLCEKVYTD-RVIIFFRQKKEAHRVRVIFALCGLKAAELHGSMSQEQRINSI 819
Query: 310 SRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSF 369
FR K +L+ TD+A+RG+DI +D VIN++ P +I++HRVGR ARAGR+G A +
Sbjct: 820 EAFRTGKASYLLATDLASRGLDIKGIDTVINYEAPQSHEIYLHRVGRTARAGRSGCACTL 879
Query: 370 VTSED 374
D
Sbjct: 880 AAEPD 884
>gi|156934713|ref|YP_001438629.1| ATP-dependent RNA helicase RhlE [Cronobacter sakazakii ATCC
BAA-894]
gi|156532967|gb|ABU77793.1| hypothetical protein ESA_02548 [Cronobacter sakazakii ATCC BAA-894]
Length = 474
Score = 257 bits (656), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 144/369 (39%), Positives = 213/369 (57%), Gaps = 7/369 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+SL LSP + RAI +GY PTPIQR+ +P++LSG D++A A+TG+GKTA F +P+LQR
Sbjct: 3 FDSLGLSPEILRAIAEQGYNEPTPIQRQAIPVVLSGKDLMASAQTGTGKTAGFTLPLLQR 62
Query: 85 L--NQHVPQG--GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
L NQ P+G VRALIL+PTR+LA Q + +E +Y D+R ++ GG S+ Q +L
Sbjct: 63 LTANQPHPKGRRPVRALILTPTRELAAQVGENVREYSKYLDIRSLVVFGGVSINPQMMKL 122
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
D++IATPGRL+ L + L VE +V DEAD + MGF + ++L +L R
Sbjct: 123 RGGVDVLIATPGRLLD-LEHQNAVKLDQVEVLVLDEADRMLDMGFIHDIRRVLAKLPPKR 181
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
Q LLFSAT + A+ L +P V + S + + ++ K L Y+I
Sbjct: 182 QNLLFSATFSDDIKSLAEKLLHNPEEVEVARRNTASEQVTQHVHFVDKKRKRELLSYLIG 241
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
+ + QQ L+F TKH L ++G+ + +G+ Q AR ++ F+ L
Sbjct: 242 D--GNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKTGGIRVL 299
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLD 380
+ TD+AARG+DI L +V+N++ P P+ +VHR+GR RA TG A S V ++ L D
Sbjct: 300 VATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRD 359
Query: 381 LHLFLSKPI 389
+ L + I
Sbjct: 360 IERLLKREI 368
>gi|407939705|ref|YP_006855346.1| DEAD/DEAH box helicase [Acidovorax sp. KKS102]
gi|407897499|gb|AFU46708.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax sp.
KKS102]
Length = 594
Score = 257 bits (656), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 134/371 (36%), Positives = 220/371 (59%), Gaps = 9/371 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ LNL+P + +A+ GY+ PTPIQ + +P +L G D++A A+TG+GKTAAF +PML R
Sbjct: 3 FDELNLAPAILKAVHETGYETPTPIQAQAIPAVLEGHDLLAGAQTGTGKTAAFTLPMLHR 62
Query: 85 LNQHV-PQG-----GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138
L+Q P+ G+RAL+L+PTR+LA Q + +E G+Y D+ +++ GG M Q +
Sbjct: 63 LSQGTAPKNKFGGKGIRALVLTPTRELAAQVEESVREYGKYLDINSTVVFGGVGMNPQID 122
Query: 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198
+ + DI++ATPGRL+ L + + L +VE +V DEAD + MGF + K+L +
Sbjct: 123 RIKRGVDILVATPGRLLD-LQQQGFLDLSTVEVLVLDEADRMLDMGFIHDVKKVLALVPN 181
Query: 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258
++Q+LLFSAT + E A L++P +++ + + + +K LL++
Sbjct: 182 DKQSLLFSATFSDEIRELANTLLKNPQSIQVTPRNTTVQRISQVIHPVGRGKKKQVLLHI 241
Query: 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
I++H S Q L+F TK + + G++ +G+ Q AR ++ F++ +
Sbjct: 242 IQQHNWS--QVLVFTRTKFGANNVAEFLTKNGVQAMALHGNKSQSARTQALAGFKSGEIR 299
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
L+ TD+AARGIDI L +V+N++ P P+ +VHR+GR RAG TG A S V ++ ++
Sbjct: 300 ALVATDIAARGIDIDDLPHVVNYEIPNVPEDYVHRIGRTGRAGATGEAVSLVCMDEEGFM 359
Query: 379 LDLHLFLSKPI 389
+D+ F + I
Sbjct: 360 MDIERFTKQQI 370
>gi|157960747|ref|YP_001500781.1| DEAD/DEAH box helicase [Shewanella pealeana ATCC 700345]
gi|157845747|gb|ABV86246.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
700345]
Length = 432
Score = 257 bits (656), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 136/369 (36%), Positives = 220/369 (59%), Gaps = 6/369 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FES + +P + RAI GY+ TPIQ++ +P + G DV+A A+TG+GKTAAF +P+LQ+
Sbjct: 3 FESFSFAPEILRAISECGYEKMTPIQQQAIPAVRRGQDVLASAQTGTGKTAAFALPILQK 62
Query: 85 LNQHVPQGG---VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
+ + G RALIL+PTR+LA Q + +Y DL++ + GG M+SQ +L
Sbjct: 63 MLDNPSTTGRSNARALILTPTRELAAQIADNINDYAKYLDLKVVTVYGGVKMDSQATKLK 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ DIIIATPGRL+ H+ ++SL +V+++V DEAD + MGF+ + KIL +++ RQ
Sbjct: 123 RGADIIIATPGRLLEHIIAC-NLSLSNVDFLVLDEADRMLDMGFSADIQKILQAVNKKRQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
LLFSAT +A+ + A + P+++ D + + + + Q K L +I +
Sbjct: 182 NLLFSATFSTAVKQLANEMMVKPNVIAADKQNTTAITVSQVVYPVEQRRKRELLSELIGK 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ QQ L+F +T+ + L +G+ +V +G+ Q +R+ + F+ K L+
Sbjct: 242 K--NWQQVLVFTATRDAADKLEKELNLDGIPTAVVHGEKAQGSRRRALREFKEGKMRVLV 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
T+VAARG+DI L+ V+N+D P + +VHR+GR RAG++G A SFV+ E+ L D+
Sbjct: 300 ATEVAARGLDIQGLEYVVNYDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLADI 359
Query: 382 HLFLSKPIR 390
+ + +R
Sbjct: 360 EKLIGQQLR 368
>gi|406868092|gb|EKD21129.1| ATP-dependent RNA helicase DRS1 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 820
Score = 257 bits (656), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 145/365 (39%), Positives = 211/365 (57%), Gaps = 8/365 (2%)
Query: 15 KQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKT 74
K K + F+SL LS + R + G+ PTPIQ KT+P+ L G DVV A TGSGKT
Sbjct: 270 KGAKAATHATFQSLGLSRPILRGLSAVGFSAPTPIQAKTIPMALQGKDVVGGAVTGSGKT 329
Query: 75 AAFLVPMLQRL---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGD 131
AAF+VP+L+RL + VP R IL PTR+LA+Q +L +TD++ L VGG
Sbjct: 330 AAFIVPVLERLLYRPKKVPTS--RVAILMPTRELAIQCHAVATKLASHTDIKFCLAVGGL 387
Query: 132 SMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHK 191
S++ Q EL PD+IIATPGR + H+ ++ ++E +V DEAD + GFA++L++
Sbjct: 388 SLKVQEAELRLRPDVIIATPGRFIDHMRNSVSFTVDTLEILVLDEADRMLEAGFADELNE 447
Query: 192 ILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR--QE 249
IL + ++RQT+LFSAT+ S++ + GL P + +D + L F LR +E
Sbjct: 448 ILTTIPKSRQTMLFSATMSSSVDNLIRVGLNRPVRLLVDAQKQTVGTLVQEFIRLRPGRE 507
Query: 250 EKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHV 309
K L + +I +D + ++F K V+F GL+ + +G M Q+ R V
Sbjct: 508 TKRMGYLLYLCANIYTD-RVIVFFRQKKEAHRARVIFGLSGLKATELHGSMSQEQRINSV 566
Query: 310 SRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSF 369
FR K FL+ TD+A+RG+DI +D VIN++ P +I++HRVGR ARAGR G A +
Sbjct: 567 EAFRDGKASFLLATDLASRGLDIKGVDTVINYEAPQSHEIYLHRVGRTARAGRQGRACTL 626
Query: 370 VTSED 374
D
Sbjct: 627 AAEPD 631
>gi|146292298|ref|YP_001182722.1| DEAD/DEAH box helicase [Shewanella putrefaciens CN-32]
gi|386312973|ref|YP_006009138.1| DEAD/DEAH box helicase [Shewanella putrefaciens 200]
gi|145563988|gb|ABP74923.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
CN-32]
gi|319425598|gb|ADV53672.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
Length = 433
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 136/369 (36%), Positives = 217/369 (58%), Gaps = 6/369 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FES + SP + RAI GY+ TPIQ++ +P I G DV+A A+TG+GKTAAF +P+LQ+
Sbjct: 3 FESFSFSPEILRAISDCGYQQMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQK 62
Query: 85 LNQ---HVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
+ + + R LIL+PTR+LA Q +Y + + + GG +E+Q ++L
Sbjct: 63 MVEKPSETLKSNARVLILTPTRELAAQVADNVTAYCKYLNFSVLTIYGGVKIETQAQKLK 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ D+I+ATPGRL+ HL+ ++SL +V+++V DEAD + MGF+ + KIL +++ RQ
Sbjct: 123 RGADVIVATPGRLLEHLTAC-NVSLSNVDFLVLDEADRMLDMGFSADIQKILQAVNKKRQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
LLFSAT SA+ + A + P ++ +D + + + + Q K L +I +
Sbjct: 182 NLLFSATFSSAVKKLANDMMVKPQVISVDKQNTTADTVSQVVYPVEQRRKRELLSELIGK 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ QQ L+F +T+ + L +G+ V +G+ Q +R+ + F A L+
Sbjct: 242 K--NWQQVLVFTATREAADTLVKELNLDGIPSEVVHGEKGQGSRRRALREFVAGDVRVLV 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
T+VAARG+DIP L+ V+N+D P + +VHR+GR RAG+TG A SFV+ E+ L D+
Sbjct: 300 ATEVAARGLDIPSLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEERTLADI 359
Query: 382 HLFLSKPIR 390
+ + IR
Sbjct: 360 EKLIGQKIR 368
>gi|389841642|ref|YP_006343726.1| ATP-dependent RNA helicase RhlE [Cronobacter sakazakii ES15]
gi|387852118|gb|AFK00216.1| ATP-dependent RNA helicase RhlE [Cronobacter sakazakii ES15]
Length = 474
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 144/369 (39%), Positives = 213/369 (57%), Gaps = 7/369 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+SL LSP + RAI +GY PTPIQR+ +P++LSG D++A A+TG+GKTA F +P+LQR
Sbjct: 3 FDSLGLSPEILRAIAEQGYNEPTPIQRQAIPVVLSGKDLMASAQTGTGKTAGFTLPLLQR 62
Query: 85 L--NQHVPQG--GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
L NQ P+G VRALIL+PTR+LA Q + +E +Y D+R ++ GG S+ Q +L
Sbjct: 63 LTANQPHPKGRRPVRALILTPTRELAAQVGENVREYSKYLDIRSLVVFGGVSINPQMMKL 122
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
D++IATPGRL+ L + L VE +V DEAD + MGF + ++L +L R
Sbjct: 123 RGGVDVLIATPGRLLD-LEHQNAVKLDQVEVLVLDEADRMLDMGFIHDIRRVLAKLPPKR 181
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
Q LLFSAT + A+ L +P V + S + + ++ K L Y+I
Sbjct: 182 QNLLFSATFSDDIKSLAEKLLHNPEEVEVARRNTASEQVTQHVHFVDKKRKRELLSYLIG 241
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
+ + QQ L+F TKH L ++G+ + +G+ Q AR ++ F+ L
Sbjct: 242 D--GNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKTGGIRVL 299
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLD 380
+ TD+AARG+DI L +V+N++ P P+ +VHR+GR RA TG A S V ++ L D
Sbjct: 300 VATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRD 359
Query: 381 LHLFLSKPI 389
+ L + I
Sbjct: 360 IERLLKREI 368
>gi|399020612|ref|ZP_10722739.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. CF444]
gi|398094379|gb|EJL84742.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. CF444]
Length = 466
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 142/382 (37%), Positives = 214/382 (56%), Gaps = 16/382 (4%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F SL LS + RA+ +GY PTPIQ + +P +L+G D++A A+TG+GKTA F +P+LQR
Sbjct: 3 FSSLGLSEEIVRAVTEQGYTTPTPIQTQAVPAVLAGGDLLAGAQTGTGKTAGFTLPLLQR 62
Query: 85 L--------NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQ 136
L N HVP +RALIL+PTR+LA Q + + G+Y L + + GG + Q
Sbjct: 63 LSSVERVKINGHVP---IRALILTPTRELAAQVEESVRLYGKYLPLTSACIFGGVGINPQ 119
Query: 137 FEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL 196
+L Q DI++ATPGRL+ H+ + + L++++ ++ DEAD + MGF + KIL L
Sbjct: 120 IRQLKQGVDILVATPGRLLDHMQQ-NTVDLRNIQVLILDEADRMLDMGFIRDIKKILAIL 178
Query: 197 SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALL 256
+ RQ LLFSAT + A L P ++ + + + +++KH L
Sbjct: 179 PKKRQNLLFSATFSDEIKALADGLLNSPAMIEVARRNSTVEVIGQKIHPVDRDKKHPMLA 238
Query: 257 YMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK 316
++I H + Q L+F TKH L +G+ +G+ Q AR ++ F+ K
Sbjct: 239 HLINTHKWT--QVLVFTRTKHGANKLVEQLERDGITAMAIHGNKSQAARTRALAEFKDGK 296
Query: 317 TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMA 376
LI TD+AARGIDI L +V+N+D P P+ +VHR+GR RAG TG+A S V ++
Sbjct: 297 LQALIATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGSAVSLVCVDERD 356
Query: 377 YLLDLHLFLSK--PIRAAPSEE 396
L D+ F+ + P+ P E
Sbjct: 357 MLHDIERFIKREIPVEIIPGFE 378
>gi|299530317|ref|ZP_07043742.1| hypothetical protein CTS44_06063 [Comamonas testosteroni S44]
gi|298721688|gb|EFI62620.1| hypothetical protein CTS44_06063 [Comamonas testosteroni S44]
Length = 613
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 136/377 (36%), Positives = 221/377 (58%), Gaps = 9/377 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE LNL+P + +A++ +GY+ PTPIQ + +PL+L+G D++A A+TG+GKTAAF +PMLQR
Sbjct: 3 FEELNLAPAILKAVQEQGYENPTPIQAQAIPLVLAGHDLLAGAQTGTGKTAAFTLPMLQR 62
Query: 85 L-NQHVPQG-----GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138
L + P+ G+R L+L+PTR+LA Q + + +Y D+ +++ GG M+ Q
Sbjct: 63 LASGAAPKNKFGGKGIRTLVLTPTRELAAQVEENLRGYAKYLDITSTVIFGGVGMKPQIA 122
Query: 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198
+ + D+++ATPGRL+ L+ M L +VE ++ DEAD + MGF + K+L + +
Sbjct: 123 RIEKGVDVLVATPGRLLD-LAGQGFMDLSTVEMLILDEADRMLDMGFIHDVKKVLALVPK 181
Query: 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258
++Q+LLFSAT + E A LR+P +++ +K + + +K LL++
Sbjct: 182 DKQSLLFSATFSDEIRELANGLLRNPQSIQVTPRNTTVQRIKQVIHPVGRGKKKQVLLHI 241
Query: 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
I+E+ S Q L+F TK + + G+ +G+ Q AR + F+ +
Sbjct: 242 IQENNWS--QVLVFTRTKFGANNVAEYLTKNGVSAMALHGNKSQSARTQALEGFKTGELR 299
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
L+ TD+AARGIDI L NV+N++ P + +VHR+GR RAGR G A S V ++ ++
Sbjct: 300 ALVATDIAARGIDIDELPNVVNYEIPNISEDYVHRIGRTGRAGREGNAVSLVCMDEEGFM 359
Query: 379 LDLHLFLSKPIRAAPSE 395
+D+ F + I P E
Sbjct: 360 MDIERFTKQEIPVQPIE 376
>gi|317132682|ref|YP_004091996.1| DEAD/DEAH box helicase [Ethanoligenens harbinense YUAN-3]
gi|315470661|gb|ADU27265.1| DEAD/DEAH box helicase domain protein [Ethanoligenens harbinense
YUAN-3]
Length = 435
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 139/370 (37%), Positives = 223/370 (60%), Gaps = 9/370 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L L+P++ +A+ GY+ PTPIQ +++P IL D++ A+TG+GKTAAF VP+L
Sbjct: 3 FSQLQLNPSILKALAAAGYEQPTPIQEQSIPYILEKRDLLGTAQTGTGKTAAFAVPILDL 62
Query: 85 L-NQHVPQGG---VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
L +H G +RAL+LSPTR+LA+Q + + R+ LR +++ GG S Q L
Sbjct: 63 LCREHGQSTGSRHIRALVLSPTRELAIQIKESFDQYSRFLHLRNTVIFGGVSQIPQVSRL 122
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
+ DI++ATPGRL+ +++ + L V Y V DEAD + MGF +HK++ +L +NR
Sbjct: 123 REGVDILVATPGRLLDLMNQ-RHVDLSHVSYFVLDEADRMLDMGFIHDVHKVVEKLPQNR 181
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSAT+P +A A L++P V + + + ++ F + ++ K L+++++
Sbjct: 182 QTLLFSATMPPDIARLADKLLKNPAQVSVAPVSSTAETVEQKLFYVDKKNKKHLLVHLLK 241
Query: 261 EHISSDQQT-LIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319
++D ++ L+F TKH + + G+ +G+ Q AR+ + F++RK
Sbjct: 242 ---TADMESVLVFSRTKHGANKIVEHLEKAGIPSKAIHGNKSQSARQQALREFKSRKIHV 298
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLL 379
L+ TD+AARGID+ L +VIN+D P +P+ +VHR+GR RAG++G AFSF E+ YL
Sbjct: 299 LVATDIAARGIDVTELSHVINYDLPNEPETYVHRIGRTGRAGQSGMAFSFCDEEEHDYLR 358
Query: 380 DLHLFLSKPI 389
+ + K I
Sbjct: 359 TIERLIGKHI 368
>gi|254513899|ref|ZP_05125960.1| ATP-dependent rna helicase, dead box family [gamma proteobacterium
NOR5-3]
gi|219676142|gb|EED32507.1| ATP-dependent rna helicase, dead box family [gamma proteobacterium
NOR5-3]
Length = 435
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 142/367 (38%), Positives = 217/367 (59%), Gaps = 5/367 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F++L L P++ +A+ +GY PTPIQ K++PL+L G DV+A A+TG+GKTAAF++P+LQR
Sbjct: 3 FDTLGLLPDLAKAVNDRGYTEPTPIQIKSIPLVLDGQDVLAAAQTGTGKTAAFVLPILQR 62
Query: 85 LN--QHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
L G VR L+L+PTR+LA Q + G+Y DLR +++ GG E Q LA+
Sbjct: 63 LAFVGLAKAGQVRTLVLTPTRELAAQVHASVEAYGQYLDLRSAVVFGGVKAEPQIAALAR 122
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
D ++ATPGRL+ L++ + ++E +V DEAD + MGF + +I+ QL ENRQT
Sbjct: 123 GVDTLVATPGRLLD-LAQQGAVDFSALEVLVLDEADRMLDMGFIHDIRRIVDQLPENRQT 181
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
L+FSAT + + A L DP V + + ++ + + ++ K L+++++ H
Sbjct: 182 LMFSATFSNEIRALAAQYLIDPVSVEVAAANSTTELVQQMAYPVDRDRKTDLLIHLLKYH 241
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
S Q LIF TKH L G + + +G+ Q+AR+ + F+ K L+
Sbjct: 242 QWS--QVLIFCRTKHGANRLTKKLLAAGFKAAPIHGNKSQNARQRALDEFKTGKLQLLVA 299
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
TD+AARG+DI L V+N+D P P+ +VHR+GR RAG TG + S + SED+ L +
Sbjct: 300 TDIAARGLDINQLPEVVNFDLPCVPQDYVHRIGRTGRAGATGRSHSLLASEDLPLLQGIE 359
Query: 383 LFLSKPI 389
+ K I
Sbjct: 360 RLIQKAI 366
>gi|120599766|ref|YP_964340.1| DEAD/DEAH box helicase [Shewanella sp. W3-18-1]
gi|120559859|gb|ABM25786.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
Length = 433
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 136/369 (36%), Positives = 217/369 (58%), Gaps = 6/369 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FES + SP + RAI GY+ TPIQ++ +P I G DV+A A+TG+GKTAAF +P+LQ+
Sbjct: 3 FESFSFSPEILRAISDCGYQQMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQK 62
Query: 85 LNQ---HVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
+ + + R LIL+PTR+LA Q +Y + + + GG +E+Q ++L
Sbjct: 63 MVEKPSETLKSNTRVLILTPTRELAAQVADNVTAYCKYLNFSVLTIYGGVKIETQAQKLK 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ D+I+ATPGRL+ HL+ ++SL +V+++V DEAD + MGF+ + KIL +++ RQ
Sbjct: 123 RGADVIVATPGRLLEHLTAC-NVSLSNVDFLVLDEADRMLDMGFSADIQKILQAVNKKRQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
LLFSAT SA+ + A + P ++ +D + + + + Q K L +I +
Sbjct: 182 NLLFSATFSSAVKKLANDMMVKPQVISVDKQNTTADTVSQVVYPVEQRRKRELLSELIGK 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ QQ L+F +T+ + L +G+ V +G+ Q +R+ + F A L+
Sbjct: 242 K--NWQQVLVFTATREAADTLVKELNLDGIPSEVVHGEKGQGSRRRALREFVAGDVRVLV 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
T+VAARG+DIP L+ V+N+D P + +VHR+GR RAG+TG A SFV+ E+ L D+
Sbjct: 300 ATEVAARGLDIPSLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEERTLADI 359
Query: 382 HLFLSKPIR 390
+ + IR
Sbjct: 360 EKLIGQKIR 368
>gi|24372961|ref|NP_717003.1| ATP-dependent RNA helicase DEAD box family [Shewanella oneidensis
MR-1]
gi|24347107|gb|AAN54448.1| ATP-dependent RNA helicase DEAD box family [Shewanella oneidensis
MR-1]
Length = 433
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 136/369 (36%), Positives = 219/369 (59%), Gaps = 6/369 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FES + P + RAI GY+ TPIQ++ +P I G DV+A A+TG+GKTAAF +P+LQ+
Sbjct: 3 FESFSFCPEILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQK 62
Query: 85 LNQH---VPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
+ ++ + R LIL+PTR+LA Q + + +Y + + + GG +E+Q ++L
Sbjct: 63 MVENPSETLKSNTRVLILTPTRELAAQVAENVEAYSKYLNFSVLTIYGGVKVETQAQKLK 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ DII+ATPGRL+ HL+ ++SL SV+++V DEAD + MGF+ + KIL +++ RQ
Sbjct: 123 RGADIIVATPGRLLEHLTAC-NLSLSSVDFLVLDEADRMLDMGFSADIQKILQAVNKKRQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
LLFSAT SA+ + A + P ++ D + + + + Q K L +I +
Sbjct: 182 NLLFSATFSSAVKKLANEMMIKPQVISADKQNTTADTVSQVVYPVEQRRKRELLSELIGK 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ QQ L+F +T+ + L +G+ V +G+ Q +R+ + F + K L+
Sbjct: 242 K--NWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFVSGKVRVLV 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
T+VAARG+DIP L+ V+N+D P + +VHR+GR RAG++G A SFV+ E+ L D+
Sbjct: 300 ATEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLADI 359
Query: 382 HLFLSKPIR 390
+ + IR
Sbjct: 360 EKLIGQKIR 368
>gi|156362250|ref|XP_001625693.1| predicted protein [Nematostella vectensis]
gi|156212537|gb|EDO33593.1| predicted protein [Nematostella vectensis]
Length = 446
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 147/384 (38%), Positives = 237/384 (61%), Gaps = 9/384 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+SL + + A K+ G+K P+ IQR+ +P+ L G DV+ +A TGSGKT AF +P+LQ
Sbjct: 16 FKSLGVVDALCEACKQLGWKTPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILQA 75
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L + PQ + ALIL+PTR+LA Q + + LG ++ +++VGG M SQ LA+ P
Sbjct: 76 LLDN-PQR-LFALILTPTRELAFQISEQCEALGSGIGVKCAVIVGGIDMMSQALMLAKKP 133
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
IIIATPGRL+ HL + SL++++Y+V DEAD + M F +++ K+L + + R+T L
Sbjct: 134 HIIIATPGRLIDHLENTKGFSLRTLKYLVMDEADRILNMDFEKEVDKLLKVIPKERRTFL 193
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKL--AFFTLRQEEKHAALLYMIREH 262
FSAT+ + + +A L+ P V+++V TK KL ++ + + K L+Y++ E
Sbjct: 194 FSATMTKKVQKLQRASLQAP--VKVEVATKYQTVEKLQQSYLFIPSKFKDCYLVYVLNEL 251
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
+ ++F T ++V+ + ++ R GL+ +G M Q R +++F+++ L+
Sbjct: 252 --AGNSFMVFCGTCNNVQRVTLMLRNLGLDAVPLHGQMSQSKRLGALNKFKSKSRSILVA 309
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
TDVA+RG+DIP +D VIN+D P K ++HRVGR ARAGR+G + +FVT D+ +
Sbjct: 310 TDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGRSVTFVTQYDVELYQRIE 369
Query: 383 LFLSKPIRAAPS-EEEVLLDMDGV 405
++K + P+ EEEV+L M+ V
Sbjct: 370 HLIAKKLPQYPTVEEEVMLLMERV 393
>gi|189208750|ref|XP_001940708.1| ATP-dependent RNA helicase DRS1 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187976801|gb|EDU43427.1| ATP-dependent RNA helicase DRS1 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 805
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 143/360 (39%), Positives = 212/360 (58%), Gaps = 12/360 (3%)
Query: 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPM 81
+G F++++LS + R + G+ PTPIQ K +P+ + G DVV A TGSGKTAAFL+P+
Sbjct: 274 TGSFQAMSLSRPILRGLASVGFTEPTPIQNKAVPIAMQGKDVVGGAETGSGKTAAFLIPI 333
Query: 82 LQRL---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138
L+RL + VP R I PTR+LA+Q +L +TD+ +L+ GG S Q
Sbjct: 334 LERLLYRPKKVPT--TRVAIFMPTRELAVQCFNVATKLASFTDITFALMAGGFSTRDQEA 391
Query: 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198
L PD++IATPGR + H+ ++ +E +V DEAD + GF QL++IL + +
Sbjct: 392 VLKTRPDVVIATPGRFIDHMHNTAAFQVEHLEILVLDEADRMLEEGFESQLNEILTTIPK 451
Query: 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTK--ISPDLKLAFFTLRQ--EEKHAA 254
+RQT+LFSAT+ S++ + + G+ P VRL VD K L F LRQ E+K A
Sbjct: 452 SRQTMLFSATMTSSVDKLIRIGMDKP--VRLMVDAKKHTVAGLTQEFVRLRQGKEDKRLA 509
Query: 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRA 314
L I E I + ++ ++F K + V+F GL+ S +G+M Q+ R V FR+
Sbjct: 510 YLMYICEKIYT-EKVIVFFRQKKEAHRVRVVFALCGLKASELHGNMSQEQRIQSVEAFRS 568
Query: 315 RKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
K+ +L+ TDVA+RG+DI + VIN++ P +I++HRVGR ARAGR+G A + D
Sbjct: 569 GKSAYLLATDVASRGLDIKNVSTVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPD 628
>gi|403381239|ref|ZP_10923296.1| DEAD/DEAH box helicase [Paenibacillus sp. JC66]
Length = 522
Score = 256 bits (655), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 133/354 (37%), Positives = 212/354 (59%), Gaps = 5/354 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L P V +AI G++ TPIQ KT+PL + G D++ A+TG+GKTAAF +P++ +
Sbjct: 4 FTDFGLEPKVLKAITEMGFEEATPIQEKTIPLAMQGLDLIGQAQTGTGKTAAFSIPLIHK 63
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
+ Q + AL++ PTR+LA+Q + ++LGR+ +R + GG + Q L + P
Sbjct: 64 I--ETSQSKIVALVMCPTRELAIQVAEEIEKLGRFKGIRSLPIYGGQDIVKQIRALKKRP 121
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
III TPGRL+ H++ + + L+ VE VV DEAD + MGF E + IL Q+ E R T+L
Sbjct: 122 QIIIGTPGRLLDHINR-KTIRLEDVETVVLDEADEMLDMGFMEDIQAILSQVPEERHTML 180
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P + + A+ LRDP V + +P ++ A+ + +++K AL +I +
Sbjct: 181 FSATMPPNIQKLAQQFLRDPQHVSVIPKQVSAPLIQQAYIEVHEKQKFEALCRLI--DME 238
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
+ +IF TK V+ L+ ++ G +GD+ Q+ R + +FR L+ TD
Sbjct: 239 APDLAIIFGRTKRRVDELSEALQKRGYSAEGLHGDLSQNQRDNVMRKFRDGSIDVLVATD 298
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
VAARG+D+ + +V+N+D P P+ +VHR+GR RAG+ GTA++FVT ++ +L
Sbjct: 299 VAARGLDVSGVSHVVNFDLPQDPESYVHRIGRTGRAGKEGTAWTFVTPREIDHL 352
>gi|335356475|ref|ZP_08548345.1| ATP-dependent RNA helicase [Lactobacillus animalis KCTC 3501]
Length = 503
Score = 256 bits (655), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 149/456 (32%), Positives = 261/456 (57%), Gaps = 14/456 (3%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L LS ++ +A+KR G++ TPIQ T+PL+L+G DV+ A+TG+GKTAAF +P+L+
Sbjct: 3 FDELGLSEDLLKAVKRSGFEEATPIQEATIPLVLAGKDVIGQAQTGTGKTAAFGLPILEH 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
++ + ++A+I+SPTR+LA+QT + LG+ R+ ++ GG + Q + L P
Sbjct: 63 VDPK--EHAIQAIIISPTRELAIQTQEELYRLGKDKRARVQVVYGGADIRRQIKLLKNPP 120
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
I++ TPGRL+ H++ + + L V+ +V DEAD + MGF + + KI+ + RQTLL
Sbjct: 121 QILVGTPGRLLDHINR-KTVDLSKVKMLVLDEADEMLDMGFLDDIEKIISNVPGQRQTLL 179
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFT-LRQEEKHAALLYMIREHI 263
FSAT+P A+ + + +P +V++ +++ DL +F +R EK + ++ +
Sbjct: 180 FSATMPKAILRIGEKFMTEPEVVKIKA-KELTTDLVDQYFVKVRDYEKFDIMTRIL--DV 236
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+ + T++F TK V+ L+ G + +GD+ Q R + RF+ K L+ T
Sbjct: 237 QAPELTIVFGRTKRRVDELSKGLEARGYNAAGIHGDLSQQRRMSILKRFKEGKLDILVAT 296
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHL 383
DVAARG+DI + +V N+D P P+ +VHR+GR RAGR G + +FVT +M YL +
Sbjct: 297 DVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGRHGVSVTFVTPNEMDYLRVIER 356
Query: 384 FLSK---PIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIID 440
K P+R EE + + + + + +A ET ++ +L+++ ++
Sbjct: 357 LTKKRMDPLRPPTEEEAFVGQVSSALDDVKELVAKTET--SKYETQAKELLAE-YDDVDL 413
Query: 441 SSADLNSLQRTCTNAFRL-YSKTKPLPSKESIRRGK 475
+A LN++ + ++ + + +PLP ++S GK
Sbjct: 414 VAALLNNMTKDDASSVPVKITPERPLPRRKSSSTGK 449
>gi|367007110|ref|XP_003688285.1| hypothetical protein TPHA_0N00700 [Tetrapisispora phaffii CBS 4417]
gi|357526593|emb|CCE65851.1| hypothetical protein TPHA_0N00700 [Tetrapisispora phaffii CBS 4417]
Length = 755
Score = 256 bits (655), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 140/361 (38%), Positives = 219/361 (60%), Gaps = 5/361 (1%)
Query: 15 KQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKT 74
K+ KK F +L+LS V + + GY P+PIQ T+P+ L G D++A A TGSGKT
Sbjct: 212 KEAKKQVHTNFNTLSLSRPVLKGLSDLGYTKPSPIQSATIPIGLLGKDIIAGAVTGSGKT 271
Query: 75 AAFLVPMLQRL-NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD-LRISLLVGGDS 132
AAF++P+++RL + R ++L+PTR+LA+Q K +G+Y + L L VGG +
Sbjct: 272 AAFMIPIIERLLYKPANIASTRVIVLTPTRELAIQVSDVGKRIGKYVNGLTFGLAVGGLN 331
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
+ Q +EL PD++IATPGR + H+ ++ SVE +V DEAD + GF E+L++I
Sbjct: 332 LRQQEQELKTRPDVVIATPGRFIDHIRNSASFNVDSVEVLVIDEADRMLEDGFQEELNEI 391
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE-- 250
+ L RQTLLFSAT+ S + + LR P + ++ + + L F +R+ +
Sbjct: 392 MSLLPTKRQTLLFSATMNSKIKQLISLSLRRPVRIMINPPKQAAARLTQEFVRIRKRDLL 451
Query: 251 KHAALLYMIREHISSDQQ-TLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHV 309
K A L Y+IR+ SS Q+ ++FVS K L ++ G++ + +G + Q+ R V
Sbjct: 452 KPALLYYLIRKLDSSSQKRIVVFVSRKEMAHRLRIIMGLLGMKVAELHGSLTQEQRLQSV 511
Query: 310 SRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSF 369
++F++ + LI TD+A+RG+DIP ++ VIN+D P +I++HRVGR ARAGR G + +F
Sbjct: 512 NQFKSLEVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTF 571
Query: 370 V 370
V
Sbjct: 572 V 572
>gi|333380523|ref|ZP_08472214.1| hypothetical protein HMPREF9455_00380 [Dysgonomonas gadei ATCC
BAA-286]
gi|332826518|gb|EGJ99347.1| hypothetical protein HMPREF9455_00380 [Dysgonomonas gadei ATCC
BAA-286]
Length = 371
Score = 256 bits (655), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 132/361 (36%), Positives = 226/361 (62%), Gaps = 6/361 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ LN+ + RA++ KGY PTPIQ +P++L D++ +A+TG+GKTAAF +P++Q
Sbjct: 3 FQELNIIEPILRALQEKGYTNPTPIQEDAIPVVLKNQDMLGLAQTGTGKTAAFSIPIIQH 62
Query: 85 LNQHVPQG---GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L Q+ G +RALI++PTR+LA+Q +E YT LR ++ GG ++Q +EL
Sbjct: 63 LYQNKISGRKREIRALIITPTRELAIQINDCIREYTLYTGLRHCVIFGGVKQKAQTDELH 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ DI++ATPGRL+ +++ +SL ++ + V DEAD + MGF + ++L +L +++Q
Sbjct: 123 KGIDILVATPGRLLDLMNQ-GFVSLNAITHFVLDEADRMLDMGFIHDIKRLLPKLPKDKQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
TL FSAT+P A+A +++ LR+P V + + + ++ + + + +++K L+ ++++
Sbjct: 182 TLFFSATMPPAIAALSRSILRNPVRVEVAPVSSVVDVIEQSVYFVEKQDKKDLLINLLKK 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
Q L+F TKH + + L + G+ +G+ Q+AR+ ++ F++ KT LI
Sbjct: 242 --DKKQSVLVFSRTKHGADKIARLLCKAGIGSEAIHGNKSQNARQRALANFKSHKTRVLI 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TD+AARGID+ L+ VIN+D P P+ +VHR+GR RAG +GTA +F ++ L D+
Sbjct: 300 ATDIAARGIDVNQLELVINYDLPDVPETYVHRIGRTGRAGHSGTALTFCAEDERPMLKDI 359
Query: 382 H 382
Sbjct: 360 Q 360
>gi|358065451|ref|ZP_09151993.1| hypothetical protein HMPREF9473_04056 [Clostridium hathewayi
WAL-18680]
gi|356696343|gb|EHI57960.1| hypothetical protein HMPREF9473_04056 [Clostridium hathewayi
WAL-18680]
Length = 534
Score = 256 bits (655), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 142/373 (38%), Positives = 218/373 (58%), Gaps = 15/373 (4%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ LNLSP + +A+++KGY P+PIQ + +P +L D++ A+TG+GKTAAF +P++Q
Sbjct: 3 FKELNLSPLLLKALEKKGYSQPSPIQEQAIPYVLEKRDLLGCAQTGTGKTAAFALPIIQN 62
Query: 85 L-------NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF 137
L Q P +RALIL+PTR+LALQ KE G YT ++ +++ GG S Q
Sbjct: 63 LMECPRKRQQKKP---IRALILTPTRELALQIADNIKEYGEYTPVKGTVIFGGVSAVPQI 119
Query: 138 EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS 197
++L + DI++ATPGRL + + E + L VE V DEAD + MGF + K++ L
Sbjct: 120 QDLRKGVDILVATPGRLNDLIGQRE-IDLSYVEIFVLDEADRMLDMGFIHDVKKVIALLP 178
Query: 198 ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLY 257
+ RQTLLFSAT+P + A L +P V + + ++ + + + + K L Y
Sbjct: 179 KKRQTLLFSATMPGEIQSLASKLLHNPVKVEVTPVSSTVDMIETSLYYVDKANKRKLLEY 238
Query: 258 MIR-EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK 316
+++ E I+S TL+F TKH + ++ + G+ + +GD Q AR+ ++ F++ K
Sbjct: 239 LLKHEDITS---TLVFTRTKHGADQVSKYLTKAGINAAAIHGDKSQGARQTALNNFKSGK 295
Query: 317 TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMA 376
L+ TD+AARGIDI L VIN+D P + +VHR+GR RAG G A SF E+
Sbjct: 296 LRVLVATDIAARGIDIEELSCVINFDLPNISETYVHRIGRTGRAGLGGRALSFCAIEEKD 355
Query: 377 YLLDLHLFLSKPI 389
Y+ D+ + K I
Sbjct: 356 YVRDIEKLIGKTI 368
>gi|238501386|ref|XP_002381927.1| ATP-dependent RNA helicase , putative [Aspergillus flavus NRRL3357]
gi|220692164|gb|EED48511.1| ATP-dependent RNA helicase , putative [Aspergillus flavus NRRL3357]
gi|391863856|gb|EIT73155.1| ATP-dependent RNA helicase [Aspergillus oryzae 3.042]
Length = 472
Score = 256 bits (655), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 153/400 (38%), Positives = 227/400 (56%), Gaps = 12/400 (3%)
Query: 5 SSKAELKRREKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVV 64
+++ E + E K+ KS F+ L L + A GYK PT IQ + +PL L G D++
Sbjct: 36 TTEQEQEPSEAPKQAPKS--FKELGLIEQLCEACDSMGYKAPTAIQAEAIPLALQGRDLI 93
Query: 65 AMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRI 124
+A TGSGKTAAF +P+LQ L L+L+PTR+LA Q + + LG +R
Sbjct: 94 GLAETGSGKTAAFALPILQALMDK--PSSFFGLVLAPTRELAYQISQAFEGLGSTISVRS 151
Query: 125 SLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG 184
++LVGG M SQ L + P II+ATPGRL+ HL + SL++++Y+V DEAD L M
Sbjct: 152 TVLVGGMDMVSQSIALGKKPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDMD 211
Query: 185 FAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDT---KISPDLKL 241
F L KIL L R+T LFSAT+ S + +A L++P +R+ V + + L+
Sbjct: 212 FGPILDKILKVLPRERRTYLFSATMSSKVESLQRASLQNP--LRVAVSSSKFQTVSTLQQ 269
Query: 242 AFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMD 301
++ + + K L+Y++ E + Q +IF T H + L+ R G +G +
Sbjct: 270 SYIFIPHKHKDLYLVYLLNEFVG--QSCIIFCRTVHETQRLSFFLRLLGFGAIPLHGQLS 327
Query: 302 QDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAG 361
Q AR + +FR+R L+ TDVAARG+DIP +D V+N+D P K F+HR+GR ARAG
Sbjct: 328 QSARLGALGKFRSRSRDILVATDVAARGLDIPSVDVVLNFDLPGDSKTFIHRIGRTARAG 387
Query: 362 RTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSE-EEVLL 400
++G A SF T D+ L + L K + P+E +EV++
Sbjct: 388 KSGVAISFATQYDVEAWLRIEGALGKKLPEYPAEKDEVMV 427
>gi|342218233|ref|ZP_08710855.1| DEAD-box ATP-dependent RNA helicase CshA [Megasphaera sp. UPII
135-E]
gi|341590668|gb|EGS33904.1| DEAD-box ATP-dependent RNA helicase CshA [Megasphaera sp. UPII
135-E]
Length = 515
Score = 256 bits (655), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 132/377 (35%), Positives = 217/377 (57%), Gaps = 5/377 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F++LN+S + +A+ G++ PTPIQ + +P+ L G D++ A+TG+GKTAAF +P+L++
Sbjct: 5 FQNLNISTTILQALNTMGFEEPTPIQAEAIPVALQGQDMIGQAQTGTGKTAAFGIPVLEK 64
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
+ V+ ++LSPTR+LA+Q + L +YT ++ + GG ME Q L ++P
Sbjct: 65 ILASSKTSNVQTIVLSPTRELAMQVAEELNHLAQYTSIQALPIYGGQDMERQLRRLRKHP 124
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
II+ATPGRL+ H+ + L + +V DEAD + MGF + +H I+ E RQTLL
Sbjct: 125 QIIVATPGRLIDHMKR-GTIHLDEISTIVLDEADEMLDMGFIDDIHTIMSATPETRQTLL 183
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P+ + + A+ L+DP ++R+ ++ ++ +K L ++ +
Sbjct: 184 FSATMPAPIQKLAQTFLKDPQIIRMKAKEVTMDLIEQSYIETPDRQKFDVLCRLL--DLQ 241
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
+IFV TK V+ L+ ++ G +GD+ Q R + +FR + L+ TD
Sbjct: 242 EPDLAIIFVRTKRRVDELSEALKKRGYSSEGIHGDLTQAKRDSVIRQFREKTIDILVATD 301
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
VAARG+DI + +V N+D P P+ +VHRVGR RAG+TG A +FV ++ +L +
Sbjct: 302 VAARGLDISGVTHVFNYDLPQDPESYVHRVGRTGRAGKTGEATTFVIPRELEHLRAIERL 361
Query: 385 LSKPI--RAAPSEEEVL 399
+ + I AP+ E L
Sbjct: 362 IKRHIVRHQAPTLAEAL 378
>gi|429852313|gb|ELA27456.1| ATP-dependent rRNA helicase rrp3 [Colletotrichum gloeosporioides
Nara gc5]
Length = 476
Score = 256 bits (654), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 144/391 (36%), Positives = 228/391 (58%), Gaps = 12/391 (3%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L + ++ A R GY PTPIQ +++P L DV+ +A TGSGKTAAF +P++Q
Sbjct: 55 FKDLGIVDSLVEACDRLGYTNPTPIQAQSIPHALQNRDVIGLAETGSGKTAAFALPIIQA 114
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L + L+L+PTR+LA Q + LG +LR++++VGG M +Q L + P
Sbjct: 115 LLDKPSH--LFGLVLAPTRELAAQIAASFEALGSLVNLRVAVIVGGLDMVAQAIALGKKP 172
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
I++ATPGRL+ HL + + SL+S++Y+V DEAD L M F + KIL + R+T L
Sbjct: 173 HIVVATPGRLVDHLEKTKGFSLRSLKYLVMDEADRLLDMDFGPSIDKILKFIPRERRTFL 232
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDT---KISPDLKLAFFTLRQEEKHAALLYMIRE 261
FSAT+ S + +A LRDP VR+ + + + L + +K L+Y++ E
Sbjct: 233 FSATMSSKIESLQRASLRDP--VRISISSSSHQTVSTLIQNYIFCPHNKKDTYLVYLVNE 290
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ S ++ ++F T + L +L R G +G ++Q AR +++FRA L+
Sbjct: 291 Y--SGKKIVLFTRTVTETQRLAILLRTLGFGAIPIHGQLNQTARLGALNKFRAGSRDILV 348
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TDVAARG+DIPL+D VIN+D P K +VHRVGR ARAG++G A + +T D+ L +
Sbjct: 349 ATDVAARGLDIPLVDVVINFDIPSDSKTYVHRVGRTARAGKSGKAITIMTQYDLEIYLRI 408
Query: 382 HLFLSKPIRAAPSEEEVLLDMDGVMSKIDQA 412
L K + P++++ ++D +++++A
Sbjct: 409 EAALGKKLPEYPTQKD---EVDVFQTRVEEA 436
>gi|322703237|gb|EFY94849.1| ATP-dependent RNA helicase drs-1 [Metarhizium anisopliae ARSEF 23]
Length = 944
Score = 256 bits (654), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 145/370 (39%), Positives = 213/370 (57%), Gaps = 10/370 (2%)
Query: 11 KRREKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTG 70
+ R+K K F+ ++LS + R + G+ PTPIQ KT+P+ L G DVV A TG
Sbjct: 244 EERQKSDKIVDLSSFQGMSLSRPILRGLAAVGFTKPTPIQAKTIPIALMGKDVVGGAVTG 303
Query: 71 SGKTAAFLVPMLQRL---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLL 127
SGKT AF VP+L+RL + +P R ++L+PTR+LA+Q +L RYTD++ SL
Sbjct: 304 SGKTGAFFVPILERLLFRPKKIPT--TRVVVLTPTRELAMQCHDVGTKLARYTDIKFSLA 361
Query: 128 VGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAE 187
VGG S+++Q EL PDII+ATPGR + H+ ++ +VE +V DEAD + GFA+
Sbjct: 362 VGGLSLKAQEVELRLRPDIIVATPGRFIDHMRNSASFNVDTVEILVLDEADRMLEDGFAD 421
Query: 188 QLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR 247
+L++IL L ++RQT+LFSAT+ S + + GL P + +D K L F LR
Sbjct: 422 ELNEILTTLPKSRQTMLFSATMTSTVDRLIRVGLNKPVRLMVDSQKKTVTTLVQEFVRLR 481
Query: 248 QEEKHAALLYMIREHISSD---QQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDA 304
+ + Y+ H+ ++ +IF K ++F GL + +G M+Q
Sbjct: 482 PGREDKRMGYLA--HLCKTFYHERVIIFFRQKKEAHRARIIFGLLGLSCAELHGSMNQSQ 539
Query: 305 RKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTG 364
R V FR K +L+ TD+A+RG+DI +D VIN++ P +I+VHRVGR ARAGR G
Sbjct: 540 RISSVEAFRDGKVSYLLATDLASRGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGRKG 599
Query: 365 TAFSFVTSED 374
TA + D
Sbjct: 600 TAVTLAAEGD 609
>gi|367014487|ref|XP_003681743.1| hypothetical protein TDEL_0E02890 [Torulaspora delbrueckii]
gi|359749404|emb|CCE92532.1| hypothetical protein TDEL_0E02890 [Torulaspora delbrueckii]
Length = 501
Score = 256 bits (654), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 155/399 (38%), Positives = 223/399 (55%), Gaps = 16/399 (4%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F LN+ P + +A K + PTPIQ K +P L G D++ +A+TGSGKTAAF +P+L R
Sbjct: 83 FSGLNIVPELLQACKNLNFTKPTPIQAKAIPPALEGKDIIGLAQTGSGKTAAFALPILNR 142
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L Q A ILSPTR+LA Q + LG R + +VGG +M Q +L + P
Sbjct: 143 LWHD--QSPYYACILSPTRELAQQIKETFDSLGTIMGARTTCIVGGMNMMDQARDLMRKP 200
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL-SENRQTL 203
IIIATPGRLM HL + SL+ ++++V DEAD L M F L +IL + ++ R T
Sbjct: 201 HIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQGRTTY 260
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
LFSAT+ S + + +A L DP + + L + K+ L+Y++ E I
Sbjct: 261 LFSATMTSKIDKLQRASLTDPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFI 320
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+ T+IF TK + E ++ L + +GD++Q+ R + F+A + L+ T
Sbjct: 321 G--KTTIIFTRTKANAERISGLCNLLEFNATALHGDLNQNQRTGALDLFKAGRRSILVAT 378
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHL 383
DVAARG+DIP +D VIN+D P K ++HRVGR ARAGR+G + S V+ D+ +L +
Sbjct: 379 DVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEE 438
Query: 384 FLSKPIRAAPSEEEVLLDMDGVMS---KIDQAIANGETI 419
L K + P E +D D VMS +D+ ANGE I
Sbjct: 439 VLGKKL---PKEN---VDRDLVMSLRNSVDK--ANGEVI 469
>gi|330915742|ref|XP_003297149.1| hypothetical protein PTT_07463 [Pyrenophora teres f. teres 0-1]
gi|311330325|gb|EFQ94748.1| hypothetical protein PTT_07463 [Pyrenophora teres f. teres 0-1]
Length = 805
Score = 256 bits (654), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 143/360 (39%), Positives = 212/360 (58%), Gaps = 12/360 (3%)
Query: 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPM 81
+G F++++LS + R + G+ PTPIQ K +P+ + G DVV A TGSGKTAAFL+P+
Sbjct: 274 TGSFQAMSLSRPILRGLASVGFTEPTPIQNKAVPIAMQGKDVVGGAETGSGKTAAFLIPI 333
Query: 82 LQRL---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138
L+RL + VP R I PTR+LA+Q +L +TD+ +L+ GG S Q
Sbjct: 334 LERLLYRPKKVPT--TRVAIFMPTRELAVQCFNVATKLASFTDITFALMAGGFSTRDQEA 391
Query: 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198
L PD++IATPGR + H+ ++ +E +V DEAD + GF QL++IL + +
Sbjct: 392 VLKTRPDVVIATPGRFIDHMHNTAAFQVEHLEILVLDEADRMLEEGFESQLNEILTTIPK 451
Query: 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTK--ISPDLKLAFFTLRQ--EEKHAA 254
+RQT+LFSAT+ S++ + + G+ P VRL VD K L F LRQ E+K A
Sbjct: 452 SRQTMLFSATMTSSVDKLIRIGMDKP--VRLMVDAKKHTVAGLTQEFVRLRQGKEDKRLA 509
Query: 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRA 314
L I E I + ++ ++F K + V+F GL+ S +G+M Q+ R V FR+
Sbjct: 510 YLMYICEKIYT-EKVIVFFRQKKEAHRVRVVFALCGLKASELHGNMSQEQRIQSVEAFRS 568
Query: 315 RKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
K+ +L+ TDVA+RG+DI + VIN++ P +I++HRVGR ARAGR+G A + D
Sbjct: 569 GKSAYLLATDVASRGLDIKNVSTVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPD 628
>gi|296132950|ref|YP_003640197.1| DEAD/DEAH box helicase [Thermincola potens JR]
gi|296031528|gb|ADG82296.1| DEAD/DEAH box helicase domain protein [Thermincola potens JR]
Length = 529
Score = 256 bits (654), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 130/350 (37%), Positives = 218/350 (62%), Gaps = 5/350 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FESL LS + +A+K G++ PTPIQ + +P++L+G DV+ A+TG+GKTAAF +P+L++
Sbjct: 7 FESLQLSRRILQAVKEMGFEEPTPIQAEAIPVLLNGHDVIGQAQTGTGKTAAFGIPILEK 66
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
LN V+AL+++PTR+LA+Q + +LG++ D+R + GG S++ Q L +
Sbjct: 67 LNPRY--RAVQALVITPTRELAIQVAEEIMKLGKFKDVRTLAVYGGQSIDRQIGALKRGV 124
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
+++ TPGRL+ H++ + L+ ++ +V DEAD + MGF + + I+ + E RQTLL
Sbjct: 125 QVVVGTPGRLLDHINR-GTLRLQHLKMLVLDEADEMLDMGFIDDIEAIIKETPETRQTLL 183
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P + + A+ L++P LV + D P ++ ++ +R++ K +L ++ E I
Sbjct: 184 FSATMPHEIQQLARKYLKNPRLVAVSKDELTVPSIEQVYYEVREKTKLESLCRVL-ETID 242
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
+IF TK V+ L G + +GD+ Q R + +F+ + +L+ TD
Sbjct: 243 V-TLAIIFCKTKRGVDELVASLETRGYQAEGLHGDLTQAQRNKVMRKFKNGQVDYLVATD 301
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
VAARG+DI + +VIN+D P P+++VHR+GR RAGR+G A +F+ E+
Sbjct: 302 VAARGLDIENVSHVINYDIPQDPEVYVHRIGRTGRAGRSGKAITFIVPEE 351
>gi|163751537|ref|ZP_02158759.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
benthica KT99]
gi|161328545|gb|EDP99698.1| ATP-dependent RNA helicase, DEAD box family protein [Shewanella
benthica KT99]
Length = 444
Score = 256 bits (654), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 138/369 (37%), Positives = 219/369 (59%), Gaps = 6/369 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FES + +P + RAI GY+ TP+Q++ +P I G DV+A A+TG+GKTAAF +P+LQ+
Sbjct: 12 FESFSFAPEILRAISECGYQEMTPVQQEAIPAIRRGQDVLASAQTGTGKTAAFALPILQK 71
Query: 85 L-NQHVP--QGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
+ + +P + RALIL+PTR+LA Q + +Y D+ + + GG ++SQ ++L
Sbjct: 72 MFDNPMPTQRSNTRALILTPTRELAAQIADNISDYSKYIDVSVLTIYGGVKVDSQAQKLK 131
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ DII+ATPGRL+ HL +++L +VE++V DEAD + MGF + KI+ +++ RQ
Sbjct: 132 RGTDIIVATPGRLLEHLQAC-NLNLSNVEFLVLDEADRMLDMGFISDIQKIMQAVNKQRQ 190
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
LLFSAT SA+ + A L P L+ L+ + + + + Q K L +I +
Sbjct: 191 NLLFSATFSSAVKKLANDMLVKPKLISLNSQNSTADTVSQVVYPVEQRRKRELLSELIGK 250
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ QQ LIF +T+ + L +G+ SV +G+ Q R+ + F+ K L+
Sbjct: 251 K--NWQQVLIFTATRDAADKLVKELNLDGITSSVVHGEKAQGNRRRALREFKEGKVRALV 308
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
T+VAARG+DI L+ V+N+D P + +VHR+GR RAG++G A S V+ E+ L D+
Sbjct: 309 ATEVAARGLDIQDLEYVVNYDLPFLAEDYVHRIGRTGRAGKSGVAISLVSREEERTLYDI 368
Query: 382 HLFLSKPIR 390
+ K +R
Sbjct: 369 ETLIGKKLR 377
>gi|169768960|ref|XP_001818950.1| ATP-dependent rRNA helicase RRP3 [Aspergillus oryzae RIB40]
gi|91207780|sp|Q2UNB7.1|RRP3_ASPOR RecName: Full=ATP-dependent rRNA helicase rrp3
gi|83766808|dbj|BAE56948.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 472
Score = 256 bits (654), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 153/400 (38%), Positives = 227/400 (56%), Gaps = 12/400 (3%)
Query: 5 SSKAELKRREKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVV 64
+++ E + E K+ KS F+ L L + A GYK PT IQ + +PL L G D++
Sbjct: 36 TTEQEQEPSEAPKQAPKS--FKELGLIEQLCEACDSMGYKAPTAIQAEAIPLALQGRDLI 93
Query: 65 AMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRI 124
+A TGSGKTAAF +P+LQ L L+L+PTR+LA Q + + LG +R
Sbjct: 94 GLAETGSGKTAAFALPILQALMDK--PSSFFGLVLAPTRELAYQISQAFEGLGSTISVRS 151
Query: 125 SLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG 184
++LVGG M SQ L + P II+ATPGRL+ HL + SL++++Y+V DEAD L M
Sbjct: 152 TVLVGGMDMVSQSIALGKKPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDMD 211
Query: 185 FAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDT---KISPDLKL 241
F L KIL L R+T LFSAT+ S + +A L++P +R+ V + + L+
Sbjct: 212 FGPILDKILKVLPRERRTYLFSATMSSKVESLQRASLQNP--LRVAVSSSKFQTVSTLQQ 269
Query: 242 AFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMD 301
++ + + K L+Y++ E + Q +IF T H + L+ R G +G +
Sbjct: 270 SYIFIPHKHKDLYLVYLLNEFVG--QSCIIFCRTVHETQRLSFFLRLLGFGAIPLHGQLS 327
Query: 302 QDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAG 361
Q AR + +FR+R L+ TDVAARG+DIP +D V+N+D P K F+HR+GR ARAG
Sbjct: 328 QSARLGALGKFRSRSRDILVATDVAARGLDIPSVDVVLNFDLPGDSKTFIHRIGRTARAG 387
Query: 362 RTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSE-EEVLL 400
++G A SF T D+ L + L K + P+E +EV++
Sbjct: 388 KSGVAISFATQYDVEAWLRIEGALGKKLPEYPAEKDEVMV 427
>gi|334130724|ref|ZP_08504514.1| ATP-dependent RNA helicase [Methyloversatilis universalis FAM5]
gi|333444124|gb|EGK72080.1| ATP-dependent RNA helicase [Methyloversatilis universalis FAM5]
Length = 480
Score = 256 bits (654), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 141/371 (38%), Positives = 212/371 (57%), Gaps = 7/371 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE L L P + RA+ GY PTPIQ + +P++L+G DV+ A+TG+GKTA+F +P+LQR
Sbjct: 3 FEELGLIPELLRAVADTGYTSPTPIQAQAIPVVLAGRDVMGGAQTGTGKTASFTLPLLQR 62
Query: 85 LNQHV---PQGG---VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138
L H P VRALI+ PTR+LA+Q + K ++ LR S + GG M++Q
Sbjct: 63 LAPHANSSPSPAKHPVRALIVCPTRELAMQVHESVKTYSKHLPLRSSCIYGGVDMKAQVA 122
Query: 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198
EL + +I++ATPGRL+ H+ E + ++L V+ +V DEAD + MGF + +IL L
Sbjct: 123 ELREGREIVVATPGRLLDHV-EGKTVNLGQVQMLVLDEADRMLDMGFIPDIKRILALLPT 181
Query: 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258
RQ+LLFSAT + + A+A LRDP L+ + + + ++K A L ++
Sbjct: 182 QRQSLLFSATFSEEIKKLAQAMLRDPQLIEVARRNATAETITHRVHACDTDDKRALLTHL 241
Query: 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
+ + +D+Q L+FV+TK L +G+ +GD Q R + F+
Sbjct: 242 LTQDSYADRQALVFVNTKFGASRLAHHLVRQGVAADAIHGDKSQQQRTEALEAFKNGSVR 301
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
L+ TDVAARG+DI L VIN++ P + +VHR+GR RAGR+G A S E+ +
Sbjct: 302 VLVATDVAARGLDIEDLPFVINFELPHNAEDYVHRIGRTGRAGRSGEAISLAAPEEKGRV 361
Query: 379 LDLHLFLSKPI 389
D+ + KPI
Sbjct: 362 ADIEKLIRKPI 372
>gi|344279740|ref|XP_003411645.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
DDX27-like [Loxodonta africana]
Length = 822
Score = 256 bits (654), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 151/429 (35%), Positives = 239/429 (55%), Gaps = 16/429 (3%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ +NLS + +AI G+K PTPIQ+ +P+ L G D+ A A TG+GKTAAF +P+L+R
Sbjct: 246 FQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLER 305
Query: 85 LNQHVPQGGV-RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L Q V R L+L PTR+L +Q TK+L ++ + L VGG ++SQ L
Sbjct: 306 LIYKPRQAAVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAA 365
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
PDI+IATPGRL+ HL L S+E ++ DEAD + F EQ+ +I+ S +RQT+
Sbjct: 366 PDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTM 425
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR--QEEKHAALLYMIRE 261
LFSAT+ + + A L++P + ++ +T ++P L+ F +R +E A++ +
Sbjct: 426 LFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLT 485
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
SD ++F TK +++L GL+ +G++ Q R + RF+ + L+
Sbjct: 486 RTFSD-HVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILV 544
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TDVAARG+DI + VIN+ P K +VHRVGR ARAGR G + S V E+ L ++
Sbjct: 545 ATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEI 604
Query: 382 HLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDS 441
P++A ++V+L + K+++ +Y V+ L ++ +EI S
Sbjct: 605 VKSAKAPVKARILPQDVILKFRDKIEKMEK------DVYA-----VLQLEAEE-KEIQQS 652
Query: 442 SADLNSLQR 450
A +N+ +R
Sbjct: 653 EAQINTAKR 661
>gi|323304679|gb|EGA58441.1| Rrp3p [Saccharomyces cerevisiae FostersB]
Length = 543
Score = 256 bits (654), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 149/396 (37%), Positives = 221/396 (55%), Gaps = 10/396 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F LNL P + +A K Y PTPIQ K +P L G D++ +A+TGSGKTAAF +P+L R
Sbjct: 125 FSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNR 184
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L Q A IL+PTR+LA Q + LG +R + +VGG +M Q +L + P
Sbjct: 185 LWHD--QEPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKP 242
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL-SENRQTL 203
IIIATPGRLM HL + SL+ ++++V DEAD L M F L +IL + ++ R T
Sbjct: 243 HIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTTY 302
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
LFSAT+ S + + +A L +P + + L + K+ L+Y++ E I
Sbjct: 303 LFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFI 362
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+ +IF TK + E L+ L + +GD++Q+ R + F+A K L+ T
Sbjct: 363 G--KTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGKRSILVAT 420
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHL 383
DVAARG+DIP +D V+N+D P K ++HRVGR ARAGR+G + S V+ D+ +L +
Sbjct: 421 DVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEE 480
Query: 384 FLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETI 419
L K + ++ ++L + G + K ANGE +
Sbjct: 481 VLGKKLPKESVDKNIILTLRGSVDK-----ANGEVV 511
>gi|167622911|ref|YP_001673205.1| DEAD/DEAH box helicase [Shewanella halifaxensis HAW-EB4]
gi|167352933|gb|ABZ75546.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
HAW-EB4]
Length = 432
Score = 256 bits (654), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 134/369 (36%), Positives = 221/369 (59%), Gaps = 6/369 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FES + +P + RAI GY+ TPIQ++ +P + G DV+A A+TG+GKTAAF +P+LQ+
Sbjct: 3 FESFSFAPEILRAISECGYEKMTPIQQQAIPAVRRGQDVLASAQTGTGKTAAFALPILQK 62
Query: 85 LNQHVPQGG---VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
+ + G RALIL+PTR+LA Q + +Y D+++ ++GG M+SQ +L
Sbjct: 63 MLDNPSTTGRSNARALILTPTRELAAQIADNINDYAKYLDMKVVTVLGGVKMDSQATKLK 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ DIIIATPGRL+ H+ ++SL +V+++V DEAD + MGF+ + KIL +++ RQ
Sbjct: 123 RGADIIIATPGRLLEHIVAC-NLSLSNVDFLVLDEADRMLDMGFSADIQKILQAVNKKRQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
LLFSAT +A+ + A + P+++ D + + + + Q K L +I +
Sbjct: 182 NLLFSATFSTAVKQLANVMMVKPNIIAADKQNTTAVTVSQVVYPVEQRRKRELLSELIGK 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ +Q L+F +T+ + L +G+ +V +G+ Q +R+ + F+ K L+
Sbjct: 242 K--NWKQVLVFTATRDAADKLEKELNLDGIPTAVVHGEKAQGSRRRALREFKEGKMRVLV 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
T+VAARG+DI L+ V+N+D P + +VHR+GR RAG++G A SFV+ E+ L D+
Sbjct: 300 ATEVAARGLDIQGLEYVVNYDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLADI 359
Query: 382 HLFLSKPIR 390
+ + +R
Sbjct: 360 EKLIGQQLR 368
>gi|226288804|gb|EEH44316.1| ATP-dependent rRNA helicase RRP3 [Paracoccidioides brasiliensis
Pb18]
Length = 482
Score = 256 bits (653), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 145/379 (38%), Positives = 222/379 (58%), Gaps = 9/379 (2%)
Query: 4 VSSKAELKRREKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADV 63
++S+A + + ++++ + F+ L + ++ A + GYK PTPIQ + +PL L G D+
Sbjct: 37 LTSEAGEQGAKNPQEETATKSFKDLGVIDSLCEACEALGYKTPTPIQTEAIPLALQGRDL 96
Query: 64 VAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLR 123
+ +A TGSGKTAAF +P+LQ L PQ + L+L+PTR+LA Q + + LG +R
Sbjct: 97 IGLAETGSGKTAAFALPILQALMDK-PQS-LFGLVLAPTRELAYQISEAFEALGSLISVR 154
Query: 124 ISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM 183
+++VGG M Q L + P II+ATPGRL+ HL + SL++++Y+V DEAD L +
Sbjct: 155 CAVIVGGMDMVPQAIALGKKPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDL 214
Query: 184 GFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDT---KISPDLK 240
F L KIL L R+T LFSAT+ S + +A L +P +R+ + + + L
Sbjct: 215 DFGPILDKILKVLPRERRTYLFSATMSSKVESLQRASLSNP--LRVSISSSKYQTVSTLL 272
Query: 241 LAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDM 300
F + + K L+Y++ E + Q +IF T + + L +L R G +G +
Sbjct: 273 QTFLFIPHKYKDIYLVYLLNEF--AGQSAIIFTRTVNETQRLAILLRALGFGAIPLHGQL 330
Query: 301 DQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARA 360
Q R + +FR+R L+ TDVAARG+DIP +D V+N+D PP K ++HRVGR ARA
Sbjct: 331 SQSYRLGALGKFRSRSRDILVATDVAARGLDIPSVDVVLNFDLPPDSKTYIHRVGRTARA 390
Query: 361 GRTGTAFSFVTSEDMAYLL 379
G++G AFSFVT D+ L
Sbjct: 391 GKSGHAFSFVTQYDLEVWL 409
>gi|393787534|ref|ZP_10375666.1| hypothetical protein HMPREF1068_01946 [Bacteroides nordii
CL02T12C05]
gi|392658769|gb|EIY52399.1| hypothetical protein HMPREF1068_01946 [Bacteroides nordii
CL02T12C05]
Length = 422
Score = 256 bits (653), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 137/366 (37%), Positives = 222/366 (60%), Gaps = 5/366 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE+LNL + +A+K +GY PTPIQ +++P++L G D++ A+TG+GKTAAF +P+LQ+
Sbjct: 3 FENLNLIEPILKALKEEGYSSPTPIQEQSIPVLLQGKDLLGCAQTGTGKTAAFSIPILQK 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L + + G++ALIL+PTR+LA+Q + + G+YT L+ +++ GG + Q + L
Sbjct: 63 LYKTDHRKGIKALILTPTRELAIQIGECFEAYGKYTGLKHTVIFGGVGQKPQTDALRNGV 122
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
I++ATPGRL+ +++ +SLK++++ V DEAD + MGF + +IL L + RQTL
Sbjct: 123 QILVATPGRLLDLITQ-GYISLKTLDFFVLDEADRMLDMGFIHDIRRILKLLPQKRQTLF 181
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLD-VDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
FSAT+P + A + L P V + + + + +F ++E+K L + + I
Sbjct: 182 FSATMPPEIETLANSMLTHPEKVEVTPASSTVDTISQYVYFVEKKEKKDLLLHLLKDQSI 241
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
S LIF TKH + L + + G+ +G+ Q+AR+ ++ F+ LI T
Sbjct: 242 ES---VLIFTRTKHGADKLARILTKSGIRAEAIHGNKSQNARQRALTDFKNHTLRVLIAT 298
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHL 383
D+AARGID+ L +VIN++ P P+ +VHR+GR RAG G A SF SE++ YL D+
Sbjct: 299 DIAARGIDVDQLSHVINYELPNVPETYVHRIGRTGRAGHEGIAISFCESEELPYLKDIQK 358
Query: 384 FLSKPI 389
+ K +
Sbjct: 359 LIGKTV 364
>gi|386391490|ref|ZP_10076271.1| DNA/RNA helicase, superfamily II [Desulfovibrio sp. U5L]
gi|385732368|gb|EIG52566.1| DNA/RNA helicase, superfamily II [Desulfovibrio sp. U5L]
Length = 493
Score = 256 bits (653), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 141/366 (38%), Positives = 214/366 (58%), Gaps = 5/366 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+S L + IKR GY+ PTPIQ + +P + G D++ +A+TG+GKTAAFL+P++ R
Sbjct: 3 FDSFCLHATITENIKRLGYENPTPIQAEAIPHVTEGRDLMGLAQTGTGKTAAFLLPIIHR 62
Query: 85 L-NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L + GVRALIL+PTR+LA Q + +LGR T LR +++ GG M Q L Q
Sbjct: 63 LMTTKSEKRGVRALILAPTRELAEQIYRAGLDLGRGTRLRAAVIYGGVGMFPQTRALRQG 122
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
DII+A PGRL+ H+++ ++ ++E +V DEAD +F MGF + +IL L RQTL
Sbjct: 123 VDIIVACPGRLLDHMNQ-GNVRFDALETLVLDEADHMFDMGFLPDIKRILSALPSERQTL 181
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
LFSAT+P A++ A L DP VR+ +S ++ A + + +K LL+++ E
Sbjct: 182 LFSATMPPAISGLAHETLTDPITVRIGHMAPLS-TVEHAIYPISHTQKAPLLLHLLEE-- 238
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+ Q ++F TKH + L G + + G++ Q R+I + FR L+ T
Sbjct: 239 AGKQSVIVFTRTKHRAKNLAQQLCRSGHKATCLQGNLSQRQRQIAMDGFRRGSFQVLVAT 298
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHL 383
D+AARGID+ + +V+N+D P + + HR+GR RA G A +FVT EDM + +
Sbjct: 299 DIAARGIDVSQVGHVVNFDIPDTAEAYTHRIGRTGRAEHEGQAHTFVTGEDMGMVRAIES 358
Query: 384 FLSKPI 389
+ KP+
Sbjct: 359 HMKKPL 364
>gi|408399032|gb|EKJ78157.1| hypothetical protein FPSE_01618 [Fusarium pseudograminearum CS3096]
Length = 793
Score = 256 bits (653), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 141/362 (38%), Positives = 213/362 (58%), Gaps = 8/362 (2%)
Query: 18 KKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77
KK+ + F++++LS + R + G+ PTPIQ K++P+ L G DVV A TGSGKT AF
Sbjct: 252 KKATASSFQTMSLSRPIMRGLASVGFTKPTPIQAKSIPIALMGKDVVGGAETGSGKTGAF 311
Query: 78 LVPMLQRL---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSME 134
++P+L+RL + +P R ++L PTR+LA+Q +L +TD++ +L VGG S++
Sbjct: 312 ILPILERLLYRPKKIPT--TRVVVLLPTRELAIQCHAVATKLAAFTDIKFTLAVGGLSLK 369
Query: 135 SQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILG 194
+Q EL PD+IIATPGR + H+ S+ +VE +V DEAD + GFAE+L++IL
Sbjct: 370 AQELELKLRPDVIIATPGRFIDHMRNSASFSVDTVEILVLDEADRMLEDGFAEELNEILT 429
Query: 195 QLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR--QEEKH 252
L ++RQT+LFSAT+ S++ GL P V ++ K L F LR +E+K
Sbjct: 430 TLPKSRQTMLFSATMTSSVDRLISIGLNRPARVMVNSQKKTVTTLVQEFVRLRPGREDKR 489
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
L + +++ ++ +IF K ++F GL + +G M+Q R V F
Sbjct: 490 MGYLAHVCKNLYK-ERVIIFFRQKKDAHRARIIFGLLGLSCAELHGSMNQTQRISSVEDF 548
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
R K +L+ TD+A+RG+DI +D VIN++ P I+VHRVGR ARAGR G A +
Sbjct: 549 RDGKVAYLLATDLASRGLDIKGVDTVINYEAPQSLDIYVHRVGRTARAGRKGVALTIAAE 608
Query: 373 ED 374
D
Sbjct: 609 SD 610
>gi|421497193|ref|ZP_15944377.1| DEAD box family ATP-dependent RNA helicase [Aeromonas media WS]
gi|407183820|gb|EKE57693.1| DEAD box family ATP-dependent RNA helicase [Aeromonas media WS]
Length = 431
Score = 256 bits (653), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 138/369 (37%), Positives = 216/369 (58%), Gaps = 6/369 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FES + +P + RA+ GY+ TP+Q++ +P I G+DV+A A+TG+GKTAAF +P+LQR
Sbjct: 3 FESFDFAPEILRAVSECGYQEMTPVQQQAIPTIRRGSDVLASAQTGTGKTAAFALPILQR 62
Query: 85 L-NQHVPQ--GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L + P R LIL+PTR+LA Q + +Y D+ + LVGG + Q +L
Sbjct: 63 LVDNPAPAQPSNARVLILTPTRELAAQVASNINDFAKYLDISVLTLVGGGKQDVQARKLK 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
II+ATPGRL+ HL+ ++SL VE +V DEAD + MGF+ + +IL +S+ RQ
Sbjct: 123 AGAHIIVATPGRLLEHLTAC-NLSLSGVETLVLDEADRILDMGFSADVQQILQAVSKTRQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
LLFSAT A+ + A L P ++ ++ + + + + Q+ K L +I +
Sbjct: 182 NLLFSATFSDAVKKLANLMLDRPQIISVNKQNSTADTVSHTVYPVEQKRKRELLSELIGK 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ QQ L+F ST+ + L +G++ +V +G+ Q +R+ + F K L+
Sbjct: 242 Q--NWQQVLVFASTRESCDVLVEELNLDGIKSAVVHGEKAQGSRRRALREFMEGKVRVLV 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
T+VAARG+DIP L V+N+D P + +VHR+GR RAG++G A SFV+ E+ LL++
Sbjct: 300 ATEVAARGLDIPDLQYVVNYDLPFLAEDYVHRIGRTGRAGKSGMAVSFVSREEERTLLEI 359
Query: 382 HLFLSKPIR 390
+ + IR
Sbjct: 360 EALIGQKIR 368
>gi|429094723|ref|ZP_19157248.1| ATP-dependent RNA helicase RhlE [Cronobacter dublinensis 1210]
gi|426740207|emb|CCJ83361.1| ATP-dependent RNA helicase RhlE [Cronobacter dublinensis 1210]
Length = 479
Score = 256 bits (653), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 146/369 (39%), Positives = 214/369 (57%), Gaps = 7/369 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+SL LSP + RAI +GY PTPIQR+ +P++LSG D++A A+TG+GKTA F +P+LQR
Sbjct: 3 FDSLGLSPEILRAIAEQGYNEPTPIQRQAIPVVLSGKDLMASAQTGTGKTAGFTLPLLQR 62
Query: 85 L--NQHVPQG--GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
L +Q PQG VRALIL+PTR+LA Q + +E +Y D+R ++ GG S+ Q +L
Sbjct: 63 LTTSQPHPQGRRPVRALILTPTRELAAQVGENVREYSKYLDIRSLVVFGGVSINPQMMKL 122
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
D++IATPGRL+ L + L VE +V DEAD + MGF + ++L +L R
Sbjct: 123 RGGVDVLIATPGRLLD-LEHQNAVKLDQVEVLVLDEADRMLDMGFIHDIRRVLAKLPAKR 181
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
Q LLFSAT + A+ LR+P V + S + + ++ K L Y+I
Sbjct: 182 QNLLFSATFSDDIKALAEKLLRNPEEVAVARRNTASGQVTQHVHFVDKKRKRELLSYLIG 241
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
+ + QQ L+F TKH L ++G+ + +G+ Q AR ++ F+ L
Sbjct: 242 D--GNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKTGGIRVL 299
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLD 380
+ TD+AARGIDI L +V+N++ P P+ +VHR+GR RA TG A S V ++ L D
Sbjct: 300 VATDIAARGIDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRD 359
Query: 381 LHLFLSKPI 389
+ L + I
Sbjct: 360 IERVLKREI 368
>gi|294657345|ref|XP_459659.2| DEHA2E08052p [Debaryomyces hansenii CBS767]
gi|91207781|sp|Q6BQ61.2|RRP3_DEBHA RecName: Full=ATP-dependent rRNA helicase RRP3
gi|199432622|emb|CAG87892.2| DEHA2E08052p [Debaryomyces hansenii CBS767]
Length = 477
Score = 256 bits (653), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 147/400 (36%), Positives = 221/400 (55%), Gaps = 14/400 (3%)
Query: 2 SLVSSKAELKRREKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGA 61
++V AELK + F L L P + AI++ + PTPIQ + +P L G
Sbjct: 54 TVVDPTAELKFK----------SFNELKLIPELLEAIQQMKFTKPTPIQSEAIPHALEGK 103
Query: 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121
D++ +A+TGSGKTAAF +P+LQ L + Q L+L+PTR+LA Q + LG
Sbjct: 104 DIIGLAQTGSGKTAAFAIPILQALWE--AQAAYYGLVLAPTRELAYQIKETFDALGSSMG 161
Query: 122 LRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181
LR +VGG M Q +L + P I++ATPGR+M HL + SLK+++Y+V DEAD L
Sbjct: 162 LRSVCIVGGMDMMDQARDLMRKPHILVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLL 221
Query: 182 GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKL 241
M F L KIL + R T LFSAT+ + +A+ +A L +P V + + + +L
Sbjct: 222 DMDFGPALDKILKIIPTQRTTYLFSATMTNKIAKLQRASLHNPVRVAVSNKYQTADNLVQ 281
Query: 242 AFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMD 301
+ + K+ L++++ E + + +IF T H + +L R G +G +
Sbjct: 282 SMMLVSDGYKNTYLIHLLNEFLG--KSIIIFTRTCAHSQRTALLARILGFSAVPLHGQLT 339
Query: 302 QDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAG 361
Q R +++F+A K LI TDVAARG+DIP +D VIN+D P K ++HRVGR ARAG
Sbjct: 340 QAQRLGSLNKFKAGKANILIATDVAARGLDIPSVDIVINYDIPTDSKAYIHRVGRTARAG 399
Query: 362 RTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLD 401
++G + S +T D+ L + L K + PS + +LD
Sbjct: 400 KSGKSISLITQYDLEMYLRIESVLGKKLPKDPSPSKAVLD 439
>gi|336171342|ref|YP_004578480.1| DEAD/DEAH box helicase [Lacinutrix sp. 5H-3-7-4]
gi|334725914|gb|AEH00052.1| DEAD/DEAH box helicase domain protein [Lacinutrix sp. 5H-3-7-4]
Length = 411
Score = 256 bits (653), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 142/359 (39%), Positives = 219/359 (61%), Gaps = 7/359 (1%)
Query: 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQ 83
F+ L L+ + RAI KGY PT IQ +T+PL+L+ DV+A A+TG+GKTAAF +P+LQ
Sbjct: 2 SFKDLKLNRPLLRAIAEKGYDNPTLIQERTIPLVLNKKDVIASAQTGTGKTAAFALPILQ 61
Query: 84 RL----NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139
L + Q VRALI+SPTR+LA+Q + ++ YT+LR +++ GG S+E Q +
Sbjct: 62 LLYDKQDAAKNQKKVRALIISPTRELAIQIQENFQDYLIYTNLRSTVIFGGASIEPQKDV 121
Query: 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSEN 199
L + DI+IATPGRL+ L + ++++L VE +V DEAD + MGF + + KI
Sbjct: 122 LRKGVDILIATPGRLLD-LHKQDEVNLDYVETLVLDEADLMLDMGFIDDVKKIERLCPAE 180
Query: 200 RQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI 259
+Q LLFSAT+P + + AK L +P V + ++ S ++ A + + + +K L+++
Sbjct: 181 KQILLFSATMPYKVEQLAKTILNNPKRVEVSQNSSTSTNINQALYYVPKPKKIELCLHLL 240
Query: 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319
R + + +IF TK+ V+ L + +GD Q R+ ++RF+ +
Sbjct: 241 RNTVKG--KIIIFRRTKYGVDKLEKTLLRNNYKADSIHGDKSQTLRQEALNRFKKNEVNI 298
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
LI TDVAARGIDI +D VIN+D P P+ +VHR+GR RAG TG A+SF ++++ Y+
Sbjct: 299 LIATDVAARGIDIENVDAVINFDMPNVPETYVHRIGRTGRAGNTGMAYSFCSADEKEYI 357
>gi|242042443|ref|XP_002468616.1| hypothetical protein SORBIDRAFT_01g049070 [Sorghum bicolor]
gi|241922470|gb|EER95614.1| hypothetical protein SORBIDRAFT_01g049070 [Sorghum bicolor]
Length = 454
Score = 256 bits (653), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 145/385 (37%), Positives = 216/385 (56%), Gaps = 5/385 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L + + A G+K PT IQ + +P L G D++A+A+TGSGKT AF +P+LQ
Sbjct: 26 FAELGICAELVEACDAMGWKEPTRIQAEAIPHALQGKDLIALAQTGSGKTGAFALPILQE 85
Query: 85 L--NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
L N+ Q A +LSPTR+LA+Q + + LG LR S+LVGG Q + +
Sbjct: 86 LLSNRQAEQS-FFACVLSPTRELAIQIAEQFEALGSAIGLRCSVLVGGVDRVQQVLSIGK 144
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
P I++ TPGRL+ HL+E + SLK ++Y+V DEAD L + F + L IL ++ ++R+T
Sbjct: 145 RPHIVVGTPGRLLDHLTETKGFSLKKIKYLVLDEADKLLNVEFEKSLDDILREIPKDRRT 204
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
LFSAT+ + + +A LR+P V LK F+ + ++K LL+++ E
Sbjct: 205 FLFSATMTKKVNKLQRACLRNPAKVEAASKYSTVDSLKQEFYFVPADDKDCYLLHVLNER 264
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
D +IFV T L ++ R GL+ G M QD R ++RF+A+ LI
Sbjct: 265 --QDSMIMIFVRTCESTRLLALMLRNLGLKAMSISGQMSQDKRLGALNRFKAKDCNILIC 322
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
TDVA+RG+DI +D VIN+D P K +VHRVGR ARAGR+G A S V + + + +
Sbjct: 323 TDVASRGLDIQGVDMVINYDIPMNSKDYVHRVGRTARAGRSGYAVSLVNQYEAQWFVLIE 382
Query: 383 LFLSKPIRAAPSEEEVLLDMDGVMS 407
L K I + + ++ + G +S
Sbjct: 383 KLLGKQIDQRKVDRDEVMILKGPIS 407
>gi|452986589|gb|EME86345.1| hypothetical protein MYCFIDRAFT_202484 [Pseudocercospora fijiensis
CIRAD86]
Length = 756
Score = 256 bits (653), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 140/365 (38%), Positives = 215/365 (58%), Gaps = 6/365 (1%)
Query: 14 EKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGK 73
E + K+ + F S+NLS + + + G+ PTPIQ KT+P+ L G D+V A TGSGK
Sbjct: 225 ETKSAKATATAFHSMNLSRQILKGLAAVGFDKPTPIQAKTIPVALEGKDLVGGAVTGSGK 284
Query: 74 TAAFLVPMLQRLNQHVPQGG--VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGD 131
TAAFL+P+L+RL + P+ R IL PTR+LALQ K+L +TD+ +GG
Sbjct: 285 TAAFLIPILERL-LYRPRNAATTRVAILMPTRELALQCFNVAKKLAAHTDITFGQAIGGL 343
Query: 132 SMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHK 191
+ Q ++L PDI+IATPGR + ++ ++E +V DEAD + GFA++L++
Sbjct: 344 NSREQEKQLKLRPDIVIATPGRFIDLERNSASFAVNTIEILVLDEADRMLEEGFADELNE 403
Query: 192 ILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ--E 249
IL ++ ++RQT+LFSAT+ S + + + G++ P + +D L F LRQ E
Sbjct: 404 ILTKIPKSRQTMLFSATMTSKVDDLIRVGMQRPVRLMVDAQKATVSGLVQEFVRLRQGRE 463
Query: 250 EKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHV 309
K A L ++ E I +D + +IF K + V+F G++ + +G+M Q+ R +
Sbjct: 464 GKRLAYLMVLCEQIYTD-RVIIFFRQKKEAHRVRVIFALAGMKAAELHGNMTQEQRINAI 522
Query: 310 SRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSF 369
FR K FL+ TD+A+RGIDI ++ VIN++ P +I++HRVGR ARAGR+G A +
Sbjct: 523 ETFRTGKASFLLATDLASRGIDIKGIETVINYEAPQSHEIYLHRVGRTARAGRSGRACTL 582
Query: 370 VTSED 374
D
Sbjct: 583 AAEPD 587
>gi|365984991|ref|XP_003669328.1| hypothetical protein NDAI_0C04250 [Naumovozyma dairenensis CBS 421]
gi|343768096|emb|CCD24085.1| hypothetical protein NDAI_0C04250 [Naumovozyma dairenensis CBS 421]
Length = 504
Score = 256 bits (653), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 149/396 (37%), Positives = 222/396 (56%), Gaps = 10/396 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F LNL P + +A K Y PTPIQ K++P L G D++ +A+TGSGKTAAF +P+L
Sbjct: 86 FSELNLVPELIQACKNLNYSKPTPIQSKSIPPALKGHDIIGLAQTGSGKTAAFAIPILNS 145
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L Q A IL+PTR+LA Q + LG +R +VGG +M Q +L + P
Sbjct: 146 LWHD--QQPYYACILAPTRELAQQIKETFDSLGSLMGVRSVCIVGGMNMMDQARDLMRKP 203
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL-SENRQTL 203
+IIATPGRLM HL + SL+ ++Y+V DEAD L M F L +IL L ++ R T
Sbjct: 204 HVIIATPGRLMDHLENTKGFSLRKLKYLVMDEADRLLDMEFGPVLDRILKILPTQGRTTY 263
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
LFSAT+ S + + +A L +P + + L + K+ L+Y++ E+I
Sbjct: 264 LFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLIVVPGGLKNTFLIYLLNEYI 323
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+ T+IF TK + E ++ L + +GD++Q+ R + F+A + L+ T
Sbjct: 324 G--KSTIIFTRTKANAERISGLCNLLEFNATALHGDLNQNQRTGALDLFKAGRKTILVAT 381
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHL 383
DVAARG+DIP +D VIN+D P K ++HRVGR ARAGR+G + S V+ D+ +L +
Sbjct: 382 DVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEE 441
Query: 384 FLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETI 419
L K + ++E++L + + K A+GE I
Sbjct: 442 VLGKKLPKETVDKEMILTLRDSVDK-----ADGEVI 472
>gi|302886563|ref|XP_003042171.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256723080|gb|EEU36458.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 490
Score = 256 bits (653), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 147/392 (37%), Positives = 227/392 (57%), Gaps = 14/392 (3%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L ++ + A + YK PTPIQ K++P+ L G D++ +A TGSGKTAAF +P+LQ
Sbjct: 67 FKDLGVNDALCEACEALNYKYPTPIQEKSIPVALQGRDIIGLAETGSGKTAAFALPVLQA 126
Query: 85 L-NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L ++ P G L+L+PTR+LA Q + + LG LR +++VGG M Q L +
Sbjct: 127 LLDKPQPLFG---LVLAPTRELATQIGQAFEALGSLISLRCAVIVGGLDMVPQAIALGKK 183
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
P II+ATPGRL+ HL + + SL++++Y++ DEAD L M F + KIL + R+T
Sbjct: 184 PHIIVATPGRLVDHLEKTKGFSLRTLKYLIMDEADRLLDMDFGPSIDKILKFIPRERRTY 243
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDT---KISPDLKLAFFTLRQEEKHAALLYMIR 260
LFSATL S + +A LRDP VR+ + + + L + + +K L+Y++
Sbjct: 244 LFSATLSSKIESLQRASLRDP--VRVSISSNKYQTVSTLIQHYMFIPFPQKDTYLVYLVN 301
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
EH + + T++F T + + +L R G +G + Q +R +++FRA L
Sbjct: 302 EH--TGKSTIVFTRTVWETQRVAILLRTLGFGAIPLHGQLSQSSRLGALNKFRAGTRDIL 359
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLD 380
+ TDVAARG+DIP +D V+N+D P K ++HRVGR ARAG++G A + VT D+
Sbjct: 360 VATDVAARGLDIPKVDVVLNYDMPQDSKTYIHRVGRTARAGKSGVAINLVTQYDLEIYAR 419
Query: 381 LHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQA 412
+ L K + PSE+E ++ S+I +A
Sbjct: 420 IEAALGKKLTEYPSEKEEVMTFQ---SRIQEA 448
>gi|442320812|ref|YP_007360833.1| putative ATP-dependent RNA helicase RhlE [Myxococcus stipitatus DSM
14675]
gi|441488454|gb|AGC45149.1| putative ATP-dependent RNA helicase RhlE [Myxococcus stipitatus DSM
14675]
Length = 497
Score = 256 bits (653), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 140/360 (38%), Positives = 213/360 (59%), Gaps = 6/360 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L L + RA+K +GY PTPIQ K +P L+G DV+ +A+TG+GKTAAF +P+LQR
Sbjct: 3 FDELQLHDTLLRAVKAEGYTTPTPIQAKAIPHALAGKDVLGVAQTGTGKTAAFALPILQR 62
Query: 85 LNQHVPQGG---VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L+ P GG VR L+L+PTR+LA Q + G+ LR +++ GG +Q + L
Sbjct: 63 LSAKAPAGGARPVRCLVLTPTRELAGQVGESFMTYGKNLPLRHAVIFGGVGQGAQVQSLQ 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ D+++ATPGRL+ L + +SL+S+E V DEAD + MGF + K++ L RQ
Sbjct: 123 RGVDVLVATPGRLLD-LMDQGYVSLRSLEVFVLDEADRMLDMGFIHDVRKVIKALPSKRQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
TL FSAT+P + + ++ L DP V + + + + F + +E+K L +++++
Sbjct: 182 TLFFSATMPPEIVDLSRNLLTDPVRVEVTPVSSTAETVAQQVFFVEREQKRGLLTHLLKD 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
S + L+F TKH + G+ + +G+ Q+AR+ + FR+ L+
Sbjct: 242 GKIS--RALVFTRTKHGANRVAKQLEGSGVSAAAIHGNKSQNARERALDDFRSGTLRVLV 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TD+AARGIDI L VIN+D P P+ +VHR+GR RAG GTA SF +E+ AYL D+
Sbjct: 300 ATDIAARGIDIDGLSFVINYDLPNVPEQYVHRIGRTGRAGAQGTALSFCDAEERAYLRDI 359
>gi|339324706|ref|YP_004684399.1| ATP-dependent RNA helicase RhlE [Cupriavidus necator N-1]
gi|338164863|gb|AEI75918.1| ATP-dependent RNA helicase RhlE [Cupriavidus necator N-1]
Length = 532
Score = 256 bits (653), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 139/373 (37%), Positives = 207/373 (55%), Gaps = 13/373 (3%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L LS + RA+ +GY PTPIQ + +P IL G D++A A+TG+GKTA F +PMLQ
Sbjct: 3 FSELGLSDKIVRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPMLQM 62
Query: 85 LNQHVPQGG----------VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSME 134
L+ +G VRAL+L+PTR+LA Q + + G+Y LR ++ GG +
Sbjct: 63 LSDSAARGANGAQRPARLPVRALVLTPTRELAAQVEESVRNYGKYLRLRSMVMFGGVGIN 122
Query: 135 SQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILG 194
Q E+L + +I++ATPGRL+ H+S+ + L VE +V DEAD + MGF + KIL
Sbjct: 123 PQIEQLKRGVEIVVATPGRLLDHVSQ-RTIDLSQVELLVLDEADRMLDMGFIHDIRKILN 181
Query: 195 QLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAA 254
L RQ LLFSAT + A L +P + + + + + + +E K
Sbjct: 182 VLPAKRQNLLFSATFSDDIRALADRLLNNPASIEVARRNTTAETVDQRVYPVDRERKREL 241
Query: 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRA 314
L +++R+H Q L+F TKH L ++GL +G+ Q AR +S F++
Sbjct: 242 LAHLVRQH--DWHQVLVFTRTKHGANRLAEQLTKDGLSALAIHGNKSQSARTRALSEFKS 299
Query: 315 RKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
L+ TD+AARGIDI L +V+N+D P P+ +VHR+GR RAG G A S V ++
Sbjct: 300 GTLRLLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAEGEAISLVCVDE 359
Query: 375 MAYLLDLHLFLSK 387
+A L D+ + +
Sbjct: 360 IALLRDIERLIKR 372
>gi|77362320|ref|YP_341894.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis TAC125]
gi|76877231|emb|CAI89448.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain;
DEAD-box protein family [Pseudoalteromonas haloplanktis
TAC125]
Length = 433
Score = 256 bits (653), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 141/388 (36%), Positives = 224/388 (57%), Gaps = 11/388 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+S + +P + +A+ Y TPIQR +P + G DV+A A+TG+GKTAAF +P++Q+
Sbjct: 3 FKSFSFAPELVQALDELNYHTLTPIQRAAIPAVRKGKDVLASAQTGTGKTAAFALPIIQK 62
Query: 85 L--NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
L ++ AL+L+PTR+LA Q K+ ++T L++ L GG + Q L +
Sbjct: 63 LFESEVSTTNAPHALVLAPTRELAEQIANNFKDFAKHTSLKVVSLFGGVNTAGQANALKE 122
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
DI++ATPGRL+ H+ + ++SL SV+++V DEAD + MGF E++ ++ +++RQ
Sbjct: 123 GVDIVVATPGRLLDHI-RLGNLSLASVKHLVLDEADRMLDMGFIEEMQGVIKSCADDRQI 181
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
LLFSAT P+A+ +FA L+ P +VR+D + + + + + K L +I +
Sbjct: 182 LLFSATFPAAIKQFASKVLKQPEIVRVDQTNSTASTVAHVVYPVEERRKQELLSELIGK- 240
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
+ QQ L+FV+ K + L +G+ +VC+GD Q R+ + F+ K L+
Sbjct: 241 -KNWQQVLVFVNMKETADELVTELNLDGIPAAVCHGDKSQGNRRRALREFKEGKVRVLVA 299
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
T+VAARGIDI L VIN D P + +VHR+GR RAG+ G A SFV+ E+ L ++
Sbjct: 300 TEVAARGIDIDGLPRVINIDLPWLAEDYVHRIGRTGRAGKEGQAISFVSREEENMLFEIE 359
Query: 383 LFLSKPIR------AAPSEEEVLLDMDG 404
+ + I+ A S EVL+D G
Sbjct: 360 TLIGQKIKRVYLEGYAVSNREVLIDKIG 387
>gi|350272013|ref|YP_004883321.1| putative RNA helicase [Oscillibacter valericigenes Sjm18-20]
gi|348596855|dbj|BAL00816.1| putative RNA helicase [Oscillibacter valericigenes Sjm18-20]
Length = 435
Score = 255 bits (652), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 138/372 (37%), Positives = 217/372 (58%), Gaps = 6/372 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ LNL+ + +A+ R+GY PTPIQ+K +P++L D++ A+TG+GKTAAF +P+LQ
Sbjct: 3 FKELNLTAPILKAVDRQGYTTPTPIQQKAIPILLQKRDLIGCAQTGTGKTAAFALPILQN 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L + G++ALIL+PTR+LA+Q + + G + LR +++ GG S Q E L +
Sbjct: 63 LASER-RKGIKALILTPTRELAIQIQENFEHYGTHLPLRCTVIFGGVSQVPQVERLRRGV 121
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
DI+IATPGRL +++ + + +E V DEAD + MGF + K+L L + RQTLL
Sbjct: 122 DILIATPGRLCDLINQ-GYVDISQIEVFVLDEADRMLDMGFIRDVKKVLNALPKKRQTLL 180
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR-EHI 263
FSAT+P + A L DP V++D T + + + + + K L ++R +
Sbjct: 181 FSATMPKEIEVLANTILHDPVTVKVDPVTSTASSIHQHVYLIDKGNKRRLLAKLLRGREV 240
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
S L+F TKH + + E G+ +G+ Q+AR+ + RF++ L+ T
Sbjct: 241 GS---ALVFTRTKHAADKVVKELAETGMVAMAIHGNKSQNARQTALKRFKSGDIKILVAT 297
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHL 383
D+AARGIDIP L +V N++ P +P+ ++HR+GR RAG G A SF +++ YL D+
Sbjct: 298 DIAARGIDIPELSHVFNYELPNEPETYIHRIGRTGRAGLGGVAISFCDYDEIPYLKDIEK 357
Query: 384 FLSKPIRAAPSE 395
+ + I SE
Sbjct: 358 LMGQTIPEEKSE 369
>gi|440636791|gb|ELR06710.1| hypothetical protein GMDG_00327 [Geomyces destructans 20631-21]
Length = 787
Score = 255 bits (652), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 146/372 (39%), Positives = 222/372 (59%), Gaps = 14/372 (3%)
Query: 11 KRREKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTG 70
++ EK K + F++++LS + R + G+ PTPIQ KT+P+ L G DVV A TG
Sbjct: 251 EKSEKTATKGEVLSFQNMSLSRPIHRGLAACGFSAPTPIQAKTIPVALLGKDVVGGAVTG 310
Query: 71 SGKTAAFLVPMLQRL---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLL 127
SGKTAAF+VP+L+RL + VP R IL PTR+LA+Q +L YTD++ L
Sbjct: 311 SGKTAAFIVPVLERLLYRPKKVPTS--RVAILMPTRELAIQCHAVATKLASYTDIKFCLA 368
Query: 128 VGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAE 187
VGG S++ Q EL PDIIIATPGR + H+ ++ ++E +V DEAD + GFA+
Sbjct: 369 VGGLSLKIQEAELRLRPDIIIATPGRFIDHMRNSPSFTVDTLEILVLDEADRMLEDGFAD 428
Query: 188 QLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLA--FFT 245
+L++IL + ++RQT+LFSAT+ S++ + + GL P VRL VD + S L F
Sbjct: 429 ELNEILTTIPKSRQTMLFSATMTSSVDKLIRVGLNRP--VRLMVDAQRSTVTTLVQEFVR 486
Query: 246 L---RQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQ 302
L R++++ LLY+ ++ + + ++F K V+F G++ + +G + Q
Sbjct: 487 LRPGREDKRMGYLLYLCQKVFHN--KVIVFFRQKKEAHRARVIFGLSGMKAAELHGSLSQ 544
Query: 303 DARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGR 362
+ R V FR K +L+ TD+A+RG+DI +D VIN++ P +I++HRVGR ARAGR
Sbjct: 545 EQRIASVEAFRDGKVSYLLATDLASRGLDIKGVDTVINYEAPQSLEIYLHRVGRTARAGR 604
Query: 363 TGTAFSFVTSED 374
+G A + D
Sbjct: 605 SGRACTLAAEPD 616
>gi|239606948|gb|EEQ83935.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces dermatitidis ER-3]
gi|327350595|gb|EGE79452.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces dermatitidis ATCC
18188]
Length = 482
Score = 255 bits (652), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 141/369 (38%), Positives = 221/369 (59%), Gaps = 9/369 (2%)
Query: 14 EKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGK 73
++Q+ ++ + F+ L + ++ A + GYK PTPIQ +++PL L G D++ +A TGSGK
Sbjct: 47 QEQQDEAVTKSFKDLGIIDSLCEACETLGYKSPTPIQAESIPLALQGRDLIGLAETGSGK 106
Query: 74 TAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSM 133
TAAF +P+LQ L + PQ + LIL+PTR+LA Q + LG +R +++VGG M
Sbjct: 107 TAAFALPILQALMEK-PQS-LFGLILAPTRELAYQISGAFEALGSLISVRCAVIVGGMDM 164
Query: 134 ESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKIL 193
Q L + P I++ATPGRL+ HL + SL++++Y+V DEAD L + F L KIL
Sbjct: 165 VPQAIALGKKPHIVVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDFGPILDKIL 224
Query: 194 GQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDT---KISPDLKLAFFTLRQEE 250
L R+T LFSAT+ S + +A L +P +R+ + + + L ++ + +
Sbjct: 225 KVLPRERRTYLFSATMSSKVESLQRASLSNP--LRVSISSSKYQTVSTLLQSYLFIPHKY 282
Query: 251 KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVS 310
K L+Y++ E+ + Q ++F T + + L +L R G +G + Q +R +S
Sbjct: 283 KDLYLVYLLNEY--AGQSAIVFTRTVNETQRLAILLRALGFGAIPLHGQLSQSSRLGALS 340
Query: 311 RFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFV 370
+FR+R L+ TDVAARG+DIP +D V+N+D PP K ++HRVGR ARAG++G AF+ V
Sbjct: 341 KFRSRSRDILVATDVAARGLDIPSVDVVLNFDLPPDSKTYIHRVGRTARAGKSGHAFNIV 400
Query: 371 TSEDMAYLL 379
T D+ L
Sbjct: 401 TQYDLEVWL 409
>gi|334705407|ref|ZP_08521273.1| DEAD box family ATP-dependent RNA helicase [Aeromonas caviae Ae398]
Length = 431
Score = 255 bits (652), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 140/369 (37%), Positives = 215/369 (58%), Gaps = 6/369 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FES + +P + RAI GY+ TP+Q + +P I G DV+A A+TG+GKTAAF +P+LQR
Sbjct: 3 FESFDFAPEILRAISDCGYQEMTPVQSQAIPAIRRGRDVLASAQTGTGKTAAFALPILQR 62
Query: 85 LNQH---VPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L + V R LIL+PTR+LA Q + +Y D+ +VGG + Q ++L
Sbjct: 63 LVDNPAPVQPSNARVLILTPTRELAAQVASNINDFAKYLDITTLTIVGGGKQDVQAKKLK 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
II+ATPGRL+ HL+ ++SL VE +V DEAD + MGF+ + +IL +++ RQ
Sbjct: 123 AGAHIIVATPGRLLEHLTAC-NLSLSGVETLVLDEADRILDMGFSADVQQILQAVNKTRQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
LLFSAT A+ + A L P +V +D + + + + Q+ K L +I +
Sbjct: 182 NLLFSATFSEAVKKLANLMLDKPQVVAVDKQNSTADTVSHTVYPVEQKRKRELLSELIGK 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ QQ L+F ST+ + L +G++ +V +GD Q +R+ + F K L+
Sbjct: 242 Q--NWQQVLVFASTRESCDELVEELNLDGIKSAVVHGDKAQGSRRRALREFTEGKLRVLV 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
T+VAARG+DIP L+ V+N+D P + +VHR+GR RAG++G A SFV+ E+ LL++
Sbjct: 300 ATEVAARGLDIPSLEYVVNYDLPFLAEDYVHRIGRTGRAGKSGMAISFVSREEERTLLEI 359
Query: 382 HLFLSKPIR 390
+ + IR
Sbjct: 360 EALIGQKIR 368
>gi|313892323|ref|ZP_07825915.1| DEAD-box ATP-dependent RNA helicase CshA [Dialister microaerophilus
UPII 345-E]
gi|313119182|gb|EFR42382.1| DEAD-box ATP-dependent RNA helicase CshA [Dialister microaerophilus
UPII 345-E]
Length = 491
Score = 255 bits (652), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 129/354 (36%), Positives = 212/354 (59%), Gaps = 5/354 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L LS + +A+ G++ P+PIQ++ +P+ + G D++ A+TG+GKTAAF +P+LQR
Sbjct: 5 FKELGLSEEIMKAVADMGFEEPSPIQKEAIPIAMQGKDLIGQAQTGTGKTAAFGIPILQR 64
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
++ P G +A++LSPTR+LA+Q+ + L +Y +++ + GG +E QF L + P
Sbjct: 65 IDTSKP--GPQAIVLSPTRELAIQSAEEINHLAQYMNIKTIPIYGGQDIERQFRALKKKP 122
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
+II+ATPGRLM H+ + + L +V+ V DE D + MGF + + I+ + RQTL
Sbjct: 123 NIIVATPGRLMDHMKR-KTIDLSNVQIAVLDEGDEMVDMGFIDDIRTIMAATPKERQTLF 181
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P+ + E A + L +P +V++ T ++ + L +K AL ++ +
Sbjct: 182 FSATMPAPIRELANSFLNEPEIVKIKAATVTIDLIEQEYIELPDRQKFDALCRLL--DMQ 239
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
S + ++FV TK + + ++ +GD+ Q R + +F+ FL+ TD
Sbjct: 240 SPELAIVFVRTKRRADEVTEALKKRAYSAEGLHGDLSQQKRDSVIRQFKEGTIDFLVATD 299
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
VAARG+DI + +V N+D P P+I+VHRVGR RAG+TG A +FV S +M L
Sbjct: 300 VAARGLDISGVTHVYNFDMPQDPEIYVHRVGRTGRAGKTGLATTFVISREMGQL 353
>gi|91792246|ref|YP_561897.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
OS217]
gi|91714248|gb|ABE54174.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
OS217]
Length = 433
Score = 255 bits (652), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 136/369 (36%), Positives = 216/369 (58%), Gaps = 6/369 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FES + +P + RAI GY+ TP+Q++ +P I G DV+A A+TG+GKTAAF +P+LQ+
Sbjct: 3 FESFSFAPEILRAIAECGYQNMTPVQQQAIPAIRRGEDVLASAQTGTGKTAAFALPILQK 62
Query: 85 LNQH---VPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
+++ V RALIL+PTR+LA Q ++ ++ + + GG M +Q ++L
Sbjct: 63 MHERPMTVQHSNARALILTPTRELAAQVADNISAYSKHMNISVLTIYGGMKMATQAQKLK 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
Q DII+ATPGRL+ H+ ++SL +VE++V DEAD + MGF+ + KIL +++ RQ
Sbjct: 123 QGADIIVATPGRLLEHIVAC-NLSLSNVEFLVLDEADRMLDMGFSTDIQKILQAVNKKRQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
LLFSAT +A+ + A L P ++ D + + + + Q K L +I
Sbjct: 182 NLLFSATFSTAVKKLANDMLDKPKIISADKQNTTAATVSQVVYPVEQRRKRELLSELI-- 239
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ QQ L+F +T+ + L +G+ +V +G+ Q +R+ + F K L+
Sbjct: 240 GTKNWQQVLVFTATRADADKLVTELNLDGIPSAVVHGEKAQGSRRRALREFIEGKVRVLV 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
T+VAARG+DI L+ V+N+D P + +VHR+GR RAG+TG A SFV+ E+ L D+
Sbjct: 300 ATEVAARGLDIQGLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEERTLADI 359
Query: 382 HLFLSKPIR 390
+ + IR
Sbjct: 360 EKLIGQKIR 368
>gi|393720931|ref|ZP_10340858.1| DEAD/DEAH box helicase [Sphingomonas echinoides ATCC 14820]
Length = 480
Score = 255 bits (652), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 135/360 (37%), Positives = 221/360 (61%), Gaps = 6/360 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L L+ + RA++ KGY PTPIQ++++P++L G D++ +A+TG+GKTAAF++P +Q+
Sbjct: 3 FAQLGLAEPLVRALEAKGYTTPTPIQKQSIPILLEGGDLLGIAQTGTGKTAAFVLPSIQQ 62
Query: 85 L---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L + V R L+L+PTR+LA Q + +E G+++ + ++ + GG S+ +++A
Sbjct: 63 LVNNEKRVLPTHCRMLVLAPTRELASQIAESAREYGKFSKMSVATVFGGTSINKNRQDMA 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ DI++ATPGRL+ L E +SL +E +V DEAD + +GF L KI+ L + RQ
Sbjct: 123 RGVDILVATPGRLLD-LIEQRFVSLAMLEILVLDEADQMLDLGFIHALRKIVRMLPKQRQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
TL FSAT+P+A+ E A L DP V++ + + + L Q EK A L ++R+
Sbjct: 182 TLFFSATMPNAIRELANQFLNDPKTVKVAPTSSTAERVDQFVTFLNQGEKQALLTILLRD 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
++ L+F TKH + + L G+ + +G+ Q R+ ++ F++ K L+
Sbjct: 242 E--KVERALVFTRTKHGADRVVKLLGANGIVSNAIHGNKSQPQRERALAEFKSGKAKVLV 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TD+AARGID+ + +V N++ P P+ +VHR+GR ARAG +GTA SFV ++ YL D+
Sbjct: 300 ATDIAARGIDVSGVSHVFNFELPNVPEQYVHRIGRTARAGASGTAISFVADDERTYLRDI 359
>gi|121702529|ref|XP_001269529.1| ATP-dependent RNA helicase , putative [Aspergillus clavatus NRRL 1]
gi|143462228|sp|A1CR32.1|RRP3_ASPCL RecName: Full=ATP-dependent rRNA helicase rrp3
gi|119397672|gb|EAW08103.1| ATP-dependent RNA helicase , putative [Aspergillus clavatus NRRL 1]
Length = 473
Score = 255 bits (652), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 152/396 (38%), Positives = 223/396 (56%), Gaps = 15/396 (3%)
Query: 14 EKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGK 73
E + K F+ L + + A GYK PTPIQ +++PL L D++ +A TGSGK
Sbjct: 44 ESSETKPAPKSFKDLGIIDQLCEACATMGYKAPTPIQAESIPLALQDRDLIGLAETGSGK 103
Query: 74 TAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSM 133
TAAF +P+LQ L PQ L+L+PTR+LA Q + + LG ++R +++VGG M
Sbjct: 104 TAAFALPILQALMDK-PQS-FFGLVLAPTRELAFQISQSFEALGSTINVRCAVIVGGMDM 161
Query: 134 ESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKIL 193
SQ L + P II+ATPGRL+ HL + SL++++Y+V DEAD L M F L KIL
Sbjct: 162 VSQSIALGKKPHIIVATPGRLLDHLENTKGFSLRTLKYLVMDEADRLLDMDFGPLLDKIL 221
Query: 194 GQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDT---KISPDLKLAFFTLRQEE 250
L R+T LFSAT+ S + +A L +P +R+ V + + L ++ + +
Sbjct: 222 KILPRERRTFLFSATMSSKVESLQRASLSNP--LRVSVSSNKYQTVSTLLQSYRFIPHKH 279
Query: 251 KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVS 310
K L+Y++ E + Q +IF T H + ++ L R G +G + Q +R +
Sbjct: 280 KDIYLVYLLNEFVG--QSAIIFTRTVHETQRISFLLRALGFGAIPLHGQLSQSSRLGALG 337
Query: 311 RFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFV 370
+FR+R L+ TDVAARG+DIP +D V+N+D P K +VHRVGR ARAG++G A SFV
Sbjct: 338 KFRSRSRDILVATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFV 397
Query: 371 TSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVM 406
T D+ L + L K + +E L+ D VM
Sbjct: 398 TQYDVEIWLRIEGALGKKL------DEYDLEKDEVM 427
>gi|169844029|ref|XP_001828736.1| ATP-dependent RNA helicase drs1 [Coprinopsis cinerea okayama7#130]
gi|116510107|gb|EAU93002.1| ATP-dependent RNA helicase drs1 [Coprinopsis cinerea okayama7#130]
Length = 754
Score = 255 bits (652), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 145/379 (38%), Positives = 221/379 (58%), Gaps = 15/379 (3%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F +NLS + +AI G+ PTPIQ T+P+ L G D+V A TGSGKTAAF++PML+R
Sbjct: 176 FLQMNLSRPILKAISSLGFTKPTPIQASTIPVALLGKDIVGNAVTGSGKTAAFMIPMLER 235
Query: 85 L---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L + R LIL PTR+LA+Q + K LG +TD++ LLVGG S+++Q L
Sbjct: 236 LLYREKGKRAAATRCLILLPTRELAVQCYEVGKRLGAHTDIQFCLLVGGLSLKAQEAALR 295
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
Q PD+++ATPGRL+ H+ +L S++ +V DEAD + GFA++L +I+ ++RQ
Sbjct: 296 QRPDVVLATPGRLIDHVRNSVGFNLDSLDILVLDEADRMLSEGFADELTEIIKACPKSRQ 355
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKL--AFFTLRQEEKHAALLYMI 259
T+LFSAT+ ++ E K L P VRL VD K S L F +R+E A+L +
Sbjct: 356 TMLFSATMTDSVDELIKMSLNKP--VRLFVDPKRSTARGLIQEFVRIRKESDRPAMLVAL 413
Query: 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319
+ + + +IFV +K + ++F G++ + +GD+ Q+ R + FR +
Sbjct: 414 CKQ-TYKHKVIIFVRSKKLAHQMRIVFSLLGMKCAELHGDLSQEQRLQALQSFREGSVDY 472
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLL 379
L+ TD+A+RG+DI ++ V+N+D P + ++HRVGR ARAGR G + + V D
Sbjct: 473 LMATDLASRGLDIKGVETVVNYDMPGQMAQYLHRVGRTARAGRKGKSVTLVGEAD----- 527
Query: 380 DLHLFLSKPIRAAPSEEEV 398
L I+ A E++V
Sbjct: 528 --RKLLKAAIKHAAGEDQV 544
>gi|66814184|ref|XP_641271.1| hypothetical protein DDB_G0280147 [Dictyostelium discoideum AX4]
gi|74897202|sp|Q54VT4.1|DDX47_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx47; AltName:
Full=DEAD box protein 47
gi|60469306|gb|EAL67300.1| hypothetical protein DDB_G0280147 [Dictyostelium discoideum AX4]
Length = 546
Score = 255 bits (652), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 144/381 (37%), Positives = 219/381 (57%), Gaps = 14/381 (3%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FESL + P + A + G+ P IQR+++P L G D++ +A+TGSGKTAAF++P+LQ+
Sbjct: 121 FESLGVHPQIIDACNKLGFNKPKEIQRESIPWALKGRDIIGLAQTGSGKTAAFVIPVLQK 180
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L + PQG + L L+PTR+LA Q +G ++ +LVGG SQ LA+ P
Sbjct: 181 LLE-APQG-LFCLALAPTRELAYQIADQFNAIGSTIGVKTCVLVGGIDSMSQSLALAKKP 238
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
+++ +PGR++HHL + +L+S++Y + DEAD LF F E+++ IL + + R T L
Sbjct: 239 HVVVGSPGRVLHHLEHTKGFNLRSIKYFIMDEADRLFSADFEEEVNNILKVIPKERNTYL 298
Query: 205 FSATLPSALAEFAKAGLRDPHLVRL-----DVDTKISPDLKLAFFTLRQEEKHAALLYMI 259
FSAT+ S +A+ +A L +P V++ VDT + L + F + K L Y++
Sbjct: 299 FSATMTSKVAKLQRASLVNPVKVQVASKYQTVDTLLQQYLFVPF-----KYKDCYLAYIL 353
Query: 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319
E + T+IF ST + ++ R G GDMDQ R +++F+
Sbjct: 354 NEL--AGNLTIIFTSTCASSTKIAMMLRNLGFGAIPINGDMDQGKRLASLNKFKQGTKSI 411
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLL 379
L+ TDVAARG+DIP +D VIN+D P K +VHRVGR ARAG +G A + VT D+
Sbjct: 412 LVATDVAARGLDIPSVDLVINYDVPTNSKEYVHRVGRTARAGNSGRAITIVTQYDVEMYQ 471
Query: 380 DLHLFLSKPIRAAPSEEEVLL 400
+ L K + + P +EE +L
Sbjct: 472 RIEFVLKKKLDSFPCQEETVL 492
>gi|302388236|ref|YP_003824058.1| DEAD/DEAH box helicase [Clostridium saccharolyticum WM1]
gi|302198864|gb|ADL06435.1| DEAD/DEAH box helicase domain protein [Clostridium saccharolyticum
WM1]
Length = 471
Score = 255 bits (652), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 137/370 (37%), Positives = 220/370 (59%), Gaps = 9/370 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ LN+ P++ +A++++ Y +PTPIQ + +P+ILSG D++ A+TG+GKTAAF +P +Q
Sbjct: 3 FKDLNIIPDIIKALEKESYLIPTPIQEEAIPVILSGRDLLGCAQTGTGKTAAFAIPTIQL 62
Query: 85 LNQ----HVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
L + H + +RALI++PTR+LALQ + G++TDL+ ++ GG S + Q E+L
Sbjct: 63 LREEKESHGAKQNIRALIVTPTRELALQIYESFNTYGKFTDLKCCVVFGGVSQKPQEEKL 122
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
Q DI++ATPGRL+ L + + +++ ++ ++ DEAD + MGF + KI+ + +
Sbjct: 123 KQRVDILVATPGRLLA-LIDQKIVNIDHIKILILDEADRMLDMGFIHDVKKIIARTPLKK 181
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLD-VDTKISPDLKLAFFTLRQEEKHAALLYMI 259
QTLLFSAT+P +A+ A L+ P + + V + + + +F + +K L +
Sbjct: 182 QTLLFSATMPPDIAKLAGTILKAPAKIEITPVSSTVDTIGQYVYFVDKSNKKDLLLHVLK 241
Query: 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319
+I S L+F TKH + LN + +GD Q AR+ ++ F+ +
Sbjct: 242 DNNIVS---ALVFTRTKHGADRLNKQLSRNNVIAQAIHGDKSQGARQSALNNFKNKSLRI 298
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLL 379
LI TD+AARGIDI L +VIN+D P P+ +VHR+GR RAG GTA SF ++ L
Sbjct: 299 LIATDIAARGIDIDELTHVINYDLPDIPETYVHRIGRTGRAGLGGTAISFCDYDEKEQLN 358
Query: 380 DLHLFLSKPI 389
D+ + K I
Sbjct: 359 DIERLIGKKI 368
>gi|255038837|ref|YP_003089458.1| DEAD/DEAH box helicase [Dyadobacter fermentans DSM 18053]
gi|254951593|gb|ACT96293.1| DEAD/DEAH box helicase domain protein [Dyadobacter fermentans DSM
18053]
Length = 383
Score = 255 bits (652), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 139/370 (37%), Positives = 224/370 (60%), Gaps = 9/370 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L L + +A++ +GY PTPIQ K +P+IL D++ A+TG+GKTAAF +PMLQ
Sbjct: 3 FQDLKLIEPIKKALQEEGYTTPTPIQSKAIPVILETKDLLGCAQTGTGKTAAFAIPMLQL 62
Query: 85 LNQHVPQGG-----VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139
L+++ P G +RALIL+PTR+LA+Q + GRYT +R +++ GG + Q +
Sbjct: 63 LHEN-PVGKFERSRIRALILTPTRELAIQIGESFAAYGRYTRVRHTVIFGGVGQKPQTDA 121
Query: 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSEN 199
LA+ D++IATPGRL+ +++ + L +E+ V DEAD + MGF + K++ L
Sbjct: 122 LAKGVDVLIATPGRLLDLINQ-GFIKLNQLEFFVLDEADRMLDMGFVHDVKKVIKLLPGK 180
Query: 200 RQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI 259
RQ+L FSAT+P A+ A LR+P V + + + ++ + F + + K++ LL+++
Sbjct: 181 RQSLFFSATMPPAIVTLAGTILRNPVKVEVTPVSSTADTIRQSVFFVDKSNKNSLLLHIL 240
Query: 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319
++ S L+F TKH + + + R+ G+ +G+ Q AR+ + F+ + T
Sbjct: 241 QDE--SIATALVFTRTKHGADKVVKVLRKAGVTSEAIHGNKSQTARQNALKNFKNQTTRV 298
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLL 379
L+ TD+AARGID+ L +VIN++ P P+ +VHR+GR RAG G A SF E+ YL
Sbjct: 299 LVATDIAARGIDVDDLTHVINYEIPNIPETYVHRIGRTGRAGAKGIALSFCDKEEKPYLK 358
Query: 380 DLHLFLSKPI 389
D+H ++K I
Sbjct: 359 DIHKLIAKNI 368
>gi|297797047|ref|XP_002866408.1| hypothetical protein ARALYDRAFT_919338 [Arabidopsis lyrata subsp.
lyrata]
gi|297312243|gb|EFH42667.1| hypothetical protein ARALYDRAFT_919338 [Arabidopsis lyrata subsp.
lyrata]
Length = 455
Score = 255 bits (652), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 144/390 (36%), Positives = 225/390 (57%), Gaps = 16/390 (4%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L + + +A +R G+K P+ IQ + +P L G DV+ +A+TGSGKT AF +P+LQ
Sbjct: 11 FAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQA 70
Query: 85 LNQHV----PQGGVR------ALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSME 134
L ++V P+ G R A +LSPTR+LA+Q + + LG LR ++LVGG
Sbjct: 71 LLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDRM 130
Query: 135 SQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILG 194
Q L + P +I+ATPGRL H+S+ + SLKS++Y+V DEAD L F + L++IL
Sbjct: 131 QQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILE 190
Query: 195 QLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISP--DLKLAFFTLRQEEKH 252
++ R+T LFSAT+ + + +A LR+P V+++ +K S LK + + + K
Sbjct: 191 EIPRERKTFLFSATMTKKVRKLQRACLRNP--VKIEAASKYSTVDTLKQQYRFVAAKYKD 248
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
L+Y++ E S ++IF T FL ++ R G G M Q R +++F
Sbjct: 249 CYLVYILSEMPES--TSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKF 306
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
+A + L+ TDVA+RG+DIP +D VIN+D P K ++HRVGR ARAGR+G S V
Sbjct: 307 KAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQ 366
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEEEVLLDM 402
++ + + + + K + P+EE+ +L +
Sbjct: 367 YELEWYIQIEKLIGKKLPEYPAEEDEVLSL 396
>gi|443312790|ref|ZP_21042405.1| DNA/RNA helicase, superfamily II [Synechocystis sp. PCC 7509]
gi|442777246|gb|ELR87524.1| DNA/RNA helicase, superfamily II [Synechocystis sp. PCC 7509]
Length = 432
Score = 255 bits (652), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 142/369 (38%), Positives = 212/369 (57%), Gaps = 7/369 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L LS + +AI +GY PTPIQ++ +P IL G DV A A+TG+GKTA F +P+LQ
Sbjct: 3 FSHLGLSQELLKAISEQGYTQPTPIQKQAIPAILQGKDVFASAQTGTGKTAGFTLPLLQL 62
Query: 85 LNQHVPQGG---VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
LN G RALIL PTR+LA Q + G+Y LR +++ GG ++ Q + L
Sbjct: 63 LNNTSANKGDRAPRALILLPTRELAQQVGDSVRTYGKYLSLRSAVIYGGVAIRPQTQTLR 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL-SENR 200
Q DI++ATPGRL+ HL E ++++L +E +V DE D + MGF + KIL +L S +R
Sbjct: 123 QGVDIVVATPGRLLDHL-EQKNLNLSQIEILVLDECDRMLDMGFIHDIRKILAKLPSSSR 181
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTL+FSAT + + + A L P L+ + S ++ + ++ K L Y I
Sbjct: 182 QTLMFSATFSTTIRQLANTLLSSPTLIEVAARNTASEQVEQVVHLVDRDRKRELLSYTIS 241
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
H + +Q L+F TKH L ++GL+ + +G+ Q AR ++ F+ K L
Sbjct: 242 FH--NWKQVLVFTRTKHGASRLAEQLAKDGLQTAAIHGNKSQSARMKALNDFKQGKVRVL 299
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLD 380
+ TDVA+RG+DI L V+N++ P P+ +VHR+GR RAG+ G A S V E+ YL
Sbjct: 300 VATDVASRGLDIERLPYVVNYELPNVPEDYVHRIGRTGRAGKEGRAVSLVCKEEYEYLES 359
Query: 381 LHLFLSKPI 389
+ L++ +
Sbjct: 360 IEKLLNQTL 368
>gi|298711460|emb|CBJ32599.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 848
Score = 255 bits (652), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 142/378 (37%), Positives = 222/378 (58%), Gaps = 8/378 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FESL ++ + A + G+ T IQR+ +PL G DV+ +A TGSGKT AF +P+LQ
Sbjct: 408 FESLGVTGPLCEAAAQLGWTHATEIQRQALPLAFEGKDVIGLAETGSGKTGAFALPILQA 467
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L ++ PQ + A+I++PTR+LA Q + + LG L+ +VGG M Q LA P
Sbjct: 468 LLEN-PQR-LFAVIMAPTRELAFQINEVMEALGVGIGLKTVCIVGGIDMFQQSVALALKP 525
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
++IATPGRL+ HL + SL++ +Y+V DEAD + GM F E+++K+L L R+T L
Sbjct: 526 HVVIATPGRLVDHLENTKGFSLRTAKYLVLDEADRMLGMDFEEEINKVLSVLPRERRTFL 585
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLA--FFTLRQEEKHAALLYMIREH 262
FSAT+ S +A+ +A L++P R++V K S L + + + K L Y++ E
Sbjct: 586 FSATMTSKVAKLQRASLKNP--ARVEVANKFSTPKTLVQQYLFIPAKHKDCYLAYVLNEF 643
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
+ Q T++FVST ++ + + +L R G + +G M Q R + +F++ + LI
Sbjct: 644 --AGQSTIVFVSTCNNAQRVALLLRNLGFQAVCLHGQMGQPKRLGALGKFKSGQRNVLIA 701
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
TDVA+RG+DIP +D V+N + P K ++HRVGR ARAGR G + +FVT D+ +
Sbjct: 702 TDVASRGLDIPSVDLVVNMEIPSHGKDYIHRVGRTARAGRAGRSIAFVTQYDVEVYQRME 761
Query: 383 LFLSKPIRAAPSEEEVLL 400
+ + + +EE +L
Sbjct: 762 ALIGQKLPPYVCDEETVL 779
>gi|222110403|ref|YP_002552667.1| dead/deah box helicase domain-containing protein [Acidovorax ebreus
TPSY]
gi|221729847|gb|ACM32667.1| DEAD/DEAH box helicase domain protein [Acidovorax ebreus TPSY]
Length = 578
Score = 255 bits (652), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 137/371 (36%), Positives = 218/371 (58%), Gaps = 9/371 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE L L+P + RA++ +GY PTPIQ + +P +L+G D++A A+TG+GKTAAF +PML R
Sbjct: 3 FEELKLAPAILRAVQEQGYDNPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPMLHR 62
Query: 85 LNQ-HVPQG-----GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138
L + P+ GVRAL+L+PTR+LA Q + + G+Y DL +++ GG M Q E
Sbjct: 63 LAEGQAPRSQFGGKGVRALVLTPTRELAAQVEESVRGYGKYLDLNSTVIFGGVGMNPQIE 122
Query: 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198
+ + D+++ATPGRL+ L + M L +VE +V DEAD + MGF + K+L L +
Sbjct: 123 RIKRGVDVLVATPGRLLD-LQQQGFMDLSTVEILVLDEADRMLDMGFIHDVKKVLALLPQ 181
Query: 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258
++Q+LLFSAT + E A + L++P +++ + + + +K LL++
Sbjct: 182 SKQSLLFSATFSDDIRELANSLLKNPQSIQVTPRNTTVQRISQVIHPVGRGKKKQVLLHI 241
Query: 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
I+EH S Q L+F TK + + G+ +G+ Q AR + F+ +
Sbjct: 242 IQEHDWS--QVLVFTRTKFGANNVAEYLTKNGVSAMALHGNKSQSARTQALEGFKTGQIR 299
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
L+ TD+AARGIDI L +V+N++ P P+ +VHR+GR RAGR G A S V ++ ++
Sbjct: 300 ALVATDIAARGIDIDDLPHVVNYEIPNVPEDYVHRIGRTGRAGREGHAVSLVCMDEEGFM 359
Query: 379 LDLHLFLSKPI 389
+++ F + I
Sbjct: 360 MEIERFTKQEI 370
>gi|160883549|ref|ZP_02064552.1| hypothetical protein BACOVA_01521 [Bacteroides ovatus ATCC 8483]
gi|237722794|ref|ZP_04553275.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|293371813|ref|ZP_06618223.1| ATP-dependent RNA helicase RhlE [Bacteroides ovatus SD CMC 3f]
gi|299147643|ref|ZP_07040707.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 3_1_23]
gi|336416998|ref|ZP_08597329.1| hypothetical protein HMPREF1017_04437 [Bacteroides ovatus
3_8_47FAA]
gi|423291591|ref|ZP_17270438.1| hypothetical protein HMPREF1069_05481 [Bacteroides ovatus
CL02T12C04]
gi|156110962|gb|EDO12707.1| DEAD/DEAH box helicase [Bacteroides ovatus ATCC 8483]
gi|229447316|gb|EEO53107.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|292633265|gb|EFF51836.1| ATP-dependent RNA helicase RhlE [Bacteroides ovatus SD CMC 3f]
gi|298514430|gb|EFI38315.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 3_1_23]
gi|335937042|gb|EGM98952.1| hypothetical protein HMPREF1017_04437 [Bacteroides ovatus
3_8_47FAA]
gi|392662714|gb|EIY56270.1| hypothetical protein HMPREF1069_05481 [Bacteroides ovatus
CL02T12C04]
Length = 374
Score = 255 bits (652), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 135/371 (36%), Positives = 219/371 (59%), Gaps = 6/371 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ LN++ + +AI+ KGY VPTPIQ + +P L+ D++ A+TG+GKTA+F +P++Q
Sbjct: 3 FKELNITEPILKAIEEKGYAVPTPIQGEAIPAALAKRDILGCAQTGTGKTASFAIPIIQH 62
Query: 85 LNQHVPQG---GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L + G++ALIL+PTR+LALQ + + +YT +R ++ GG + Q + L
Sbjct: 63 LQMNKEAAKCRGIKALILTPTRELALQISECINDYAKYTQVRHGVIFGGVNQRPQVDMLH 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ DI++ATPGRL+ +++ + L ++Y V DEAD + MGF + +IL +L + +Q
Sbjct: 123 KGIDILVATPGRLLDLMNQ-GHIHLDKIQYFVLDEADRMLDMGFIHDIKRILPKLPKEKQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
TL FSAT+P + + L++P VR+ + K S + E+K +LL +
Sbjct: 182 TLFFSATMPDTIISLTNSLLKNP--VRISITPKSSTVDAIEQMVYFVEKKEKSLLLVSIL 239
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
S DQ L+F TKH+ + + + + G+ +G+ Q AR++ + F++ KT ++
Sbjct: 240 QKSEDQSVLVFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQLALGNFKSGKTRVMV 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TD+AARGIDI L VIN+D P P+ +VHR+GR RAG TGTA +F + E+ + D+
Sbjct: 300 ATDIAARGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNTGTALTFCSQEERKLVNDI 359
Query: 382 HLFLSKPIRAA 392
K + A
Sbjct: 360 QKLTGKKLNKA 370
>gi|121594947|ref|YP_986843.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax sp.
JS42]
gi|120607027|gb|ABM42767.1| DEAD/DEAH box helicase domain protein [Acidovorax sp. JS42]
Length = 577
Score = 255 bits (652), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 137/371 (36%), Positives = 218/371 (58%), Gaps = 9/371 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE L L+P + RA++ +GY PTPIQ + +P +L+G D++A A+TG+GKTAAF +PML R
Sbjct: 3 FEELKLAPAILRAVQEQGYDNPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPMLHR 62
Query: 85 LNQ-HVPQG-----GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138
L + P+ GVRAL+L+PTR+LA Q + + G+Y DL +++ GG M Q E
Sbjct: 63 LAEGQAPRSQFGGKGVRALVLTPTRELAAQVEESVRGYGKYLDLNSTVIFGGVGMNPQIE 122
Query: 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198
+ + D+++ATPGRL+ L + M L +VE +V DEAD + MGF + K+L L +
Sbjct: 123 RIKRGVDVLVATPGRLLD-LQQQGFMDLSTVEILVLDEADRMLDMGFIHDVKKVLALLPQ 181
Query: 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258
++Q+LLFSAT + E A + L++P +++ + + + +K LL++
Sbjct: 182 SKQSLLFSATFSDDIRELANSLLKNPQSIQVTPRNTTVQRISQVIHPVGRGKKKQVLLHI 241
Query: 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
I+EH S Q L+F TK + + G+ +G+ Q AR + F+ +
Sbjct: 242 IQEHDWS--QVLVFTRTKFGANNVAEYLTKNGVSAMALHGNKSQSARTQALEGFKTGQIR 299
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
L+ TD+AARGIDI L +V+N++ P P+ +VHR+GR RAGR G A S V ++ ++
Sbjct: 300 ALVATDIAARGIDIDDLPHVVNYEIPNVPEDYVHRIGRTGRAGREGHAVSLVCMDEEGFM 359
Query: 379 LDLHLFLSKPI 389
+++ F + I
Sbjct: 360 MEIERFTKQEI 370
>gi|113971144|ref|YP_734937.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
MR-4]
gi|113885828|gb|ABI39880.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
Length = 433
Score = 255 bits (651), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 135/369 (36%), Positives = 217/369 (58%), Gaps = 6/369 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FES + P + RAI GY+ TPIQ++ +P I G DV+A A+TG+GKTAAF +P+LQ+
Sbjct: 3 FESFSFCPEILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQK 62
Query: 85 LNQH---VPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
+ ++ + R LIL+PTR+LA Q + +Y + + + GG +E+Q ++L
Sbjct: 63 MAENPSETLKSNARVLILTPTRELAAQVADNVEAYSKYLNFSVLTIYGGVKVETQAQKLK 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ DII+ATPGRL+ HL+ ++SL S++++V DEAD + MGF + KIL +++ RQ
Sbjct: 123 RGADIIVATPGRLLEHLTAC-NLSLSSIDFLVLDEADRMLDMGFNADIQKILQAVNKKRQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
LLFSAT SA+ + A + P ++ D + + + + Q K L +I +
Sbjct: 182 NLLFSATFSSAVKKLANEMMVKPQVISADKQNTTADTVSQVVYPVEQRRKRELLSELIGK 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ QQ L+F +T+ + L +G+ V +G+ Q +R+ + F + K L+
Sbjct: 242 K--NWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFMSGKVRVLV 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
T+VAARG+DIP L+ V+N+D P + +VHR+GR RAG++G A SFV+ E+ L D+
Sbjct: 300 ATEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLADI 359
Query: 382 HLFLSKPIR 390
+ + IR
Sbjct: 360 EKLIGQKIR 368
>gi|367033825|ref|XP_003666195.1| hypothetical protein MYCTH_2096529 [Myceliophthora thermophila ATCC
42464]
gi|347013467|gb|AEO60950.1| hypothetical protein MYCTH_2096529 [Myceliophthora thermophila ATCC
42464]
Length = 493
Score = 255 bits (651), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 150/384 (39%), Positives = 221/384 (57%), Gaps = 6/384 (1%)
Query: 19 KSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78
KS F L + ++ A +R GYK PTPIQ++ +PL L D++ +A TGSGKTAAF
Sbjct: 61 KSVVKTFRDLGIVDSLCDACERLGYKNPTPIQQEAIPLALQNRDIIGIAETGSGKTAAFA 120
Query: 79 VPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138
+P+LQ L PQ + AL+L+PTR+LA Q + + LG LR +L++GG M Q
Sbjct: 121 LPILQALLDK-PQP-LFALVLAPTRELAAQIAQAFEALGSLISLRCALILGGLDMVQQAI 178
Query: 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198
L + P +++ATPGRL+ HL + + SL++++++V DEAD L M F L KIL L
Sbjct: 179 ALGKKPHVVVATPGRLLDHLEKTKGFSLRNLKFLVMDEADRLLDMDFGPILEKILKFLPR 238
Query: 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDT-KISPDLKLAFFTLRQEEKHAALLY 257
R+T LFSAT+ S + +A LRDP V + + L + + K L+Y
Sbjct: 239 ERRTFLFSATMSSKVESLQRASLRDPLKVSISSSKYQTVSTLVQNYIFIPHMHKDTYLIY 298
Query: 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKT 317
+ E + Q +IF T + + +L R G+ +G + Q AR +++FRA+
Sbjct: 299 LCNEF--AGQTIIIFTRTVLETQRIAILLRTLGMGAIPLHGGLSQSARLGALNKFRAKSR 356
Query: 318 MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAY 377
L+ TDVAARG+DIP +D V+N+D P K +VHRVGR ARAG++G A SFVT D+
Sbjct: 357 DILVATDVAARGLDIPNVDCVLNFDLPQDSKTYVHRVGRTARAGKSGHAISFVTQYDLEI 416
Query: 378 LLDLHLFL-SKPIRAAPSEEEVLL 400
L + L +K A ++EV++
Sbjct: 417 WLRIEAALGTKLTEYATEKDEVMV 440
>gi|449308931|ref|YP_007441287.1| ATP-dependent RNA helicase RhlE [Cronobacter sakazakii SP291]
gi|449098964|gb|AGE86998.1| ATP-dependent RNA helicase RhlE [Cronobacter sakazakii SP291]
Length = 444
Score = 255 bits (651), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 144/369 (39%), Positives = 213/369 (57%), Gaps = 7/369 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+SL LSP + RAI +GY PTPIQR+ +P++LSG D++A A+TG+GKTA F +P+LQR
Sbjct: 3 FDSLGLSPEILRAIAEQGYNEPTPIQRQAIPVVLSGKDLMASAQTGTGKTAGFTLPLLQR 62
Query: 85 L--NQHVPQG--GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
L NQ P+G VRALIL+PTR+LA Q + +E +Y D+R ++ GG S+ Q +L
Sbjct: 63 LTANQPHPKGRRPVRALILTPTRELAAQVGENVREYSKYLDIRSLVVFGGVSINPQMMKL 122
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
D++IATPGRL+ L + L VE +V DEAD + MGF + ++L +L R
Sbjct: 123 RGGVDVLIATPGRLLD-LEHQNAVKLDQVEVLVLDEADRMLDMGFIHDIRRVLAKLPPKR 181
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
Q LLFSAT + A+ L +P V + S + + ++ K L Y+I
Sbjct: 182 QNLLFSATFSDDIKSLAEKLLHNPEEVEVARRNTASEQVTQHVHFVDKKRKRELLSYLIG 241
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
+ + QQ L+F TKH L ++G+ + +G+ Q AR ++ F+ L
Sbjct: 242 D--GNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKTGGIRVL 299
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLD 380
+ TD+AARG+DI L +V+N++ P P+ +VHR+GR RA TG A S V ++ L D
Sbjct: 300 VATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRD 359
Query: 381 LHLFLSKPI 389
+ L + I
Sbjct: 360 IERLLKREI 368
>gi|374340782|ref|YP_005097518.1| DNA/RNA helicase [Marinitoga piezophila KA3]
gi|372102316|gb|AEX86220.1| DNA/RNA helicase, superfamily II [Marinitoga piezophila KA3]
Length = 533
Score = 255 bits (651), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 136/356 (38%), Positives = 214/356 (60%), Gaps = 7/356 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLIL-SGADVVAMARTGSGKTAAFLVPMLQ 83
FE L LS + +A+K+KG++ PTPIQ K +P++L G DV+ A+TG+GKTAAF +P+++
Sbjct: 7 FEDLGLSESTLKALKKKGFEEPTPIQEKVIPILLQEGIDVIGQAQTGTGKTAAFGLPLIE 66
Query: 84 RLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
+L P V+ALIL+PTR+LA+Q + L L I + GG S+E+Q L +
Sbjct: 67 KLE---PSKKVKALILTPTRELAIQVAEEINSLKGRKKLNILPIYGGQSIENQISRLKKG 123
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
DI++ TPGR++ H+ + + LK V YV+ DEAD + MGF + + +IL E +Q L
Sbjct: 124 IDIVVGTPGRILDHIRR-KTLDLKHVSYVILDEADEMLDMGFIDDVEEILSNTPEKKQIL 182
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
LFSAT+PS + + AK + + ++ + + + + +F + + +K AL +I I
Sbjct: 183 LFSATMPSRILKLAKKYMSNYKIISVKPEQLTTELTEQIYFEVNESDKFEALCRII--DI 240
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+ L+F TK V+ ++ + G +GD+ Q R+ + +F+ ++ L+ T
Sbjct: 241 EPEFYGLVFCRTKVDVDTVSNRLIDRGYSAEALHGDLSQYQRERILRKFKTKRANILVAT 300
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLL 379
DVAARGIDI L +VIN+ P P+ +VHR+GR RAG+ GTA +FVT E+ LL
Sbjct: 301 DVAARGIDISDLTHVINYSLPQNPESYVHRIGRTGRAGKEGTAITFVTPEEYRKLL 356
>gi|46124501|ref|XP_386804.1| hypothetical protein FG06628.1 [Gibberella zeae PH-1]
gi|91206590|sp|Q4I830.1|DRS1_GIBZE RecName: Full=ATP-dependent RNA helicase DRS1
Length = 796
Score = 255 bits (651), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 140/362 (38%), Positives = 214/362 (59%), Gaps = 8/362 (2%)
Query: 18 KKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77
KK+ + F++++LS + R + G+ PTPIQ K++P+ L G DVV A TGSGKT AF
Sbjct: 251 KKATASSFQTMSLSRPIMRGLASVGFTKPTPIQAKSIPIALMGKDVVGGAETGSGKTGAF 310
Query: 78 LVPMLQRL---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSME 134
++P+L+RL + +P R ++L PTR+LA+Q +L +TD++ +L VGG S++
Sbjct: 311 ILPILERLLYRPKKIPT--TRVVVLLPTRELAIQCHAVATKLAAFTDIKFTLAVGGLSLK 368
Query: 135 SQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILG 194
+Q EL PD+IIATPGR + H+ S+ +VE +V DEAD + GFA++L++IL
Sbjct: 369 AQELELKLRPDVIIATPGRFIDHMRNSASFSVDTVEILVLDEADRMLEDGFADELNEILT 428
Query: 195 QLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR--QEEKH 252
L ++RQT+LFSAT+ S++ + GL P V ++ K L F LR +E+K
Sbjct: 429 TLPKSRQTMLFSATMTSSVDRLIQIGLNRPARVMVNSQKKTVTTLVQEFVRLRPGREDKR 488
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
L + +++ ++ +IF K ++F GL + +G M+Q R V F
Sbjct: 489 MGYLAHVCKNLYK-ERVIIFFRQKKDAHRARIIFGLLGLSCAELHGSMNQTQRISSVEDF 547
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
R K +L+ TD+A+RG+DI +D VIN++ P I+VHRVGR ARAGR G A +
Sbjct: 548 RDGKVAYLLATDLASRGLDIKGVDTVINYEAPQSLDIYVHRVGRTARAGRKGVALTIAAE 607
Query: 373 ED 374
D
Sbjct: 608 SD 609
>gi|315637497|ref|ZP_07892707.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri JV22]
gi|315478215|gb|EFU68938.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri JV22]
Length = 435
Score = 255 bits (651), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 140/369 (37%), Positives = 214/369 (57%), Gaps = 6/369 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F +L L + RAIK +GY PTPIQ K++P+ILS DV+A A+TG+GKTA F +P+LQR
Sbjct: 3 FSNLGLCKEILRAIKEEGYTTPTPIQSKSIPVILSKKDVLAAAQTGTGKTAGFTLPLLQR 62
Query: 85 L---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L N + VRALIL+PTR+LA Q + + G+Y + +++ GG + Q L
Sbjct: 63 LKDSNLKDKKTQVRALILTPTRELAAQVAQSVETYGKYLPFKSAVIFGGVGINPQKALLK 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ DIIIATPGRL+ +S+ + + L +E++V DEAD + MGF + KIL L + RQ
Sbjct: 123 KGVDIIIATPGRLLDLISQ-DSLDLSKIEFLVLDEADRMLDMGFINDIKKILAILPKQRQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
LLFSAT + + + A L+ P LV + S ++ + ++ K LL+++ +
Sbjct: 182 NLLFSATFSNEIKKLADGLLKSPVLVEVSKANSASFKVEQVVHHVDKDRKKELLLHLVNK 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ S QQ L+F TKH L+ ++ + + +G+ Q AR + F+ K L+
Sbjct: 242 N--SWQQVLVFTRTKHGANKLSEALVKDKITSAAIHGNKSQGARTKALDDFKNGKVRVLV 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TD+AARGIDI L +V+N++ P + +VHR+GR RAG G A S V ++ YL +
Sbjct: 300 ATDIAARGIDIEQLPHVVNFELPNVAEDYVHRIGRTGRAGNNGIAISLVCVDEHEYLFGI 359
Query: 382 HLFLSKPIR 390
+ + I+
Sbjct: 360 ERLIKQKIK 368
>gi|421189112|ref|ZP_15646431.1| superfamily II DNA/RNA helicase [Oenococcus oeni AWRIB422]
gi|421191928|ref|ZP_15649198.1| superfamily II DNA/RNA helicase [Oenococcus oeni AWRIB548]
gi|399970749|gb|EJO05040.1| superfamily II DNA/RNA helicase [Oenococcus oeni AWRIB548]
gi|399973869|gb|EJO08033.1| superfamily II DNA/RNA helicase [Oenococcus oeni AWRIB422]
Length = 521
Score = 255 bits (651), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 155/458 (33%), Positives = 248/458 (54%), Gaps = 22/458 (4%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE LSP + A+K+ GY TPIQ KT+PLI+ G DV+ A+TG+GKTAAF +P+L+
Sbjct: 3 FEEFGLSPELLSAVKKHGYDEATPIQEKTIPLIIQGVDVIGQAQTGTGKTAAFGLPILEE 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
++ PQ ++AL++SPTR+LA+QT + +LG ++ ++ GG + Q L ++P
Sbjct: 63 VDPKNPQ--IQALVISPTRELAMQTEEELNKLGSDKHVKTQVVFGGYDIRRQIHALKEHP 120
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
I++ TPGRL+ HL+ + + V+ +V DEAD + MGF E + I+ ++RQTLL
Sbjct: 121 QILVGTPGRLIDHLNR-HTIDFRGVKTLVIDEADEMLNMGFLEDIETIVHYTPDDRQTLL 179
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFT-LRQEEKHAALLYMIREHI 263
FSAT+P + + + DP V + ++ DL + R+ EK A+ + +
Sbjct: 180 FSATMPDDIKKIGVKFMEDPEEVHI-ASKGLTIDLVDQYLVNTREYEKFDAMTRLF--DV 236
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+ ++F TK V+ L + G + + +GD+DQ AR + F+ + FL+ T
Sbjct: 237 EQPELAIVFGRTKRRVDELTKALQLRGYKAAGIHGDLDQAARMRTLRSFKKGELQFLVAT 296
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHL 383
DVAARG+DI + +V N+D P P+ +VHR+GR RAG G + +FV ++ YL +
Sbjct: 297 DVAARGLDISGVTHVYNYDVPQDPESYVHRIGRTGRAGHHGVSVTFVVRGEIDYLRAIEK 356
Query: 384 FLSKPIRA--APSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDS 441
++K + A PS EEV + +++ A A + G+ T ID V D EI +
Sbjct: 357 LINKRMAALKPPSAEEVHI------ARLKNAKAETYAVLGK---TTIDNVEDEATEIANQ 407
Query: 442 SADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPR 479
+ +T+P+ I + K LPR
Sbjct: 408 YDAKLIAAALLHALSKDDERTRPV----DIAQEKPLPR 441
>gi|268573560|ref|XP_002641757.1| Hypothetical protein CBG10097 [Caenorhabditis briggsae]
Length = 486
Score = 255 bits (651), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 138/354 (38%), Positives = 213/354 (60%), Gaps = 5/354 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L +S + A R G+ P+ IQ+ +P L G DV+ +A TGSGKT AF +P+LQ
Sbjct: 46 FAELGVSQPLCDACLRLGWTKPSKIQQAALPHALEGKDVIGLAETGSGKTGAFAIPVLQS 105
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L H PQ L+L+PTR+LA Q + + LG L ++++VGG M +Q LA+ P
Sbjct: 106 LLDH-PQA-FFCLVLTPTRELAFQIGQQFEALGSGIGLIVAVIVGGVDMAAQAMALARRP 163
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
II+ATPGRL+ HL + +LK++++++ DEAD + M F +L KIL + + R+T L
Sbjct: 164 HIIVATPGRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIPKERRTYL 223
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+ +++ +A LRDP V + K +LK + + + K L+Y++ EH
Sbjct: 224 FSATMTKKVSKLERASLRDPARVSISTRYKTVDNLKQHYIFIPNKYKETYLVYLLNEH-- 281
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
+ ++F +T + V+ R+ G++ +G M Q+ R +++F+++ L+ TD
Sbjct: 282 AGNSAIVFCATCATTMQVAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKAREILVCTD 341
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDM-AY 377
VAARG+DIP +D VIN+D P + K +VHRVGR ARAGR+G A + VT D+ AY
Sbjct: 342 VAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGLAITVVTQYDVEAY 395
>gi|114048383|ref|YP_738933.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
MR-7]
gi|113889825|gb|ABI43876.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
Length = 433
Score = 255 bits (651), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 136/369 (36%), Positives = 217/369 (58%), Gaps = 6/369 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FES + P + RAI GY+ TPIQ++ +P I G DV+A A+TG+GKTAAF +P+LQ+
Sbjct: 3 FESFSFCPEILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQK 62
Query: 85 LNQH---VPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
+ ++ + R LIL+PTR+LA Q + +Y + + + GG +E+Q ++L
Sbjct: 63 MVENPSETLKSNARVLILTPTRELAAQVADNVEAYSKYLNFSVLTIYGGVKVETQAQKLK 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ DII+ATPGRL+ HL+ ++SL SV+++V DEAD + MGF + KIL +++ RQ
Sbjct: 123 RGADIIVATPGRLLEHLTAC-NLSLSSVDFLVLDEADRMLDMGFNADIQKILQAVNKKRQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
LLFSAT SA+ + A + P ++ D + + + + Q K L +I +
Sbjct: 182 NLLFSATFSSAVKKLANDMMVKPQVISADKQNTTADTVSQVVYPVEQRRKRELLSELIGK 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ QQ L+F +T+ + L +G+ V +G+ Q +R+ + F + K L+
Sbjct: 242 K--NWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFMSGKVRVLV 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
T+VAARG+DIP L+ V+N+D P + +VHR+GR RAG++G A SFV+ E+ L D+
Sbjct: 300 ATEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLADI 359
Query: 382 HLFLSKPIR 390
+ + IR
Sbjct: 360 EKLIGQKIR 368
>gi|403347814|gb|EJY73340.1| hypothetical protein OXYTRI_05530 [Oxytricha trifallax]
Length = 508
Score = 255 bits (651), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 139/380 (36%), Positives = 221/380 (58%), Gaps = 4/380 (1%)
Query: 14 EKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGK 73
E++K S FE L + + A+K GYK PT IQ +++ L G D++ +A TGSGK
Sbjct: 50 EEEKTIMSSTTFEKLGVCSELQEALKNMGYKCPTKIQAESLQYTLKGKDIIGLAETGSGK 109
Query: 74 TAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSM 133
TAAF +P++Q+L + PQ A ++SPTR+L +Q + + +G LR ++LVGG M
Sbjct: 110 TAAFAIPVIQQLLDN-PQP-FFACVMSPTRELCVQIAEQFEAIGAGIGLRTAVLVGGLDM 167
Query: 134 ESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKIL 193
SQ L++NP ++I TPGR+ HL+ + LK +++++FDEAD L M F +Q++ IL
Sbjct: 168 VSQAIALSKNPHVVIGTPGRMADHLANTKGFHLKKLKFLIFDEADRLLSMDFEKQINLIL 227
Query: 194 GQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHA 253
Q+ ++R T LFSAT+ S + + +A L DP + + K L + + ++ K
Sbjct: 228 TQIPKSRNTYLFSATMTSKVQKLQRASLNDPVKIEVSSKYKTVDTLVQNYIFIPEKHKET 287
Query: 254 ALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFR 313
L+Y++ + + Q+ +IF +T + L ++ R + G + Q R +++F+
Sbjct: 288 YLVYLLTQF--AGQKMIIFTTTCNQSMKLALILRNLNFKAVNINGQLTQTQRLSALNKFK 345
Query: 314 ARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSE 373
A + LI TDVA+RG+DIP +D VIN+D P K +VHRVGR ARAG+TG A +FVT
Sbjct: 346 ANERNILIATDVASRGLDIPEVDFVINFDIPQHSKDYVHRVGRTARAGKTGKAITFVTQY 405
Query: 374 DMAYLLDLHLFLSKPIRAAP 393
D+ + + K + P
Sbjct: 406 DVETFQKIEQLIDKKLDEYP 425
>gi|325279879|ref|YP_004252421.1| DEAD/DEAH box helicase domain-containing protein [Odoribacter
splanchnicus DSM 20712]
gi|324311688|gb|ADY32241.1| DEAD/DEAH box helicase domain protein [Odoribacter splanchnicus DSM
20712]
Length = 374
Score = 255 bits (651), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 134/353 (37%), Positives = 217/353 (61%), Gaps = 6/353 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ LN+ + +AI+ KGY PTPIQ++ +P+ LS D++ A+TG+GKTA+F +P++Q
Sbjct: 3 FKELNIIQPILKAIEEKGYNRPTPIQQQAIPVALSRKDILGCAQTGTGKTASFAIPIIQL 62
Query: 85 LNQH---VPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L + GV+ALIL+PTR+LALQ + E RYT +R ++ GG + Q L
Sbjct: 63 LQADPIITKRKGVKALILTPTRELALQISECLDEYARYTPVRHGVMFGGVNQRPQVTMLQ 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ DI++ATPGRL+ +S+ +SL V+Y V DEAD + MGF + +IL +L + +Q
Sbjct: 123 KGIDILVATPGRLLDLMSQ-GFLSLDQVKYFVLDEADRMLDMGFIHDIKRILPKLPKEKQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
TL FSAT+P ++ A A L++P + + ++ ++ + + + EK L+ ++R+
Sbjct: 182 TLFFSATMPDSIVTLASALLKNPVKITITPESPTVDAIEQFVYFVEKAEKGRLLISLLRK 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ +Q L+F TKH+ + + + + G+ +G+ Q AR+ + F++ KT ++
Sbjct: 242 --AENQSVLVFSRTKHNADRIVRVLGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRVMV 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
TD+AARGIDI L VIN+D P P+ +VHR+GR RAG GTAF+F + E+
Sbjct: 300 ATDIAARGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNAGTAFTFCSQEE 352
>gi|300311049|ref|YP_003775141.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1]
gi|300073834|gb|ADJ63233.1| ATP-dependent RNA helicase protein [Herbaspirillum seropedicae
SmR1]
Length = 520
Score = 255 bits (651), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 140/373 (37%), Positives = 213/373 (57%), Gaps = 14/373 (3%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F +L LS + RA+ +GY PTPIQ + +P +LSG D++A A+TG+GKTA F +P+LQR
Sbjct: 3 FSALGLSDEIVRAVSEQGYTSPTPIQAQAVPAVLSGGDLLAGAQTGTGKTAGFTLPLLQR 62
Query: 85 L--------NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQ 136
L N HVP +RALIL+PTR+LA Q + ++ G+Y L + + GG + Q
Sbjct: 63 LSAMPRQKINGHVP---IRALILAPTRELAAQVEESVRQYGKYLPLTSACIFGGVGINPQ 119
Query: 137 FEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL 196
L + DI++ATPGRL+ H+ + ++L+ ++ +V DEAD + MGF + K+L L
Sbjct: 120 ITLLKRGVDILVATPGRLLDHMQQ-GTVNLQHIQILVLDEADRMLDMGFIRDIRKVLAAL 178
Query: 197 SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALL 256
RQ LLFSAT + + A + L +P L+ + + + +++KH L
Sbjct: 179 PPKRQNLLFSATFADEIKKLADSLLNNPALIEVARRNSTVEVIAQKIHPVDRDKKHPMLA 238
Query: 257 YMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK 316
++I+ H +Q L+F TKH L +G+ +G+ Q AR ++ F+ K
Sbjct: 239 HLIKTH--QWKQVLVFTRTKHGANKLVEQLGRDGITAMAIHGNKSQSARTKALAEFKDGK 296
Query: 317 TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMA 376
LI TD+AARGIDI L +V+N+D P P+ +VHR+GR RAG TG A S V ++
Sbjct: 297 LTALIATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCIDERD 356
Query: 377 YLLDLHLFLSKPI 389
L D+ F+ + I
Sbjct: 357 LLHDIERFIKREI 369
>gi|26450667|dbj|BAC42444.1| putative replication protein A1 [Arabidopsis thaliana]
gi|28951031|gb|AAO63439.1| At5g60990 [Arabidopsis thaliana]
Length = 456
Score = 255 bits (651), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 144/390 (36%), Positives = 225/390 (57%), Gaps = 16/390 (4%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L + + +A +R G+K P+ IQ + +P L G DV+ +A+TGSGKT AF +P+LQ
Sbjct: 11 FAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQA 70
Query: 85 LNQHV----PQGGVR------ALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSME 134
L ++V P+ G R A +LSPTR+LA+Q + + LG LR ++LVGG
Sbjct: 71 LLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDRM 130
Query: 135 SQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILG 194
Q L + P +I+ATPGRL H+S+ + SLKS++Y+V DEAD L F + L++IL
Sbjct: 131 QQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILE 190
Query: 195 QLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISP--DLKLAFFTLRQEEKH 252
++ R+T LFSAT+ + + +A LR+P V+++ +K S LK + + + K
Sbjct: 191 EIPLERETFLFSATMTKKVRKLQRACLRNP--VKIEAASKYSTVDTLKQQYRFVAAKYKD 248
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
L+Y++ E S ++IF T FL ++ R G G M Q R +++F
Sbjct: 249 CYLVYILSEMPES--TSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKF 306
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
+A + L+ TDVA+RG+DIP +D VIN+D P K ++HRVGR ARAGR+G S V
Sbjct: 307 KAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQ 366
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEEEVLLDM 402
++ + + + + K + P+EE+ +L +
Sbjct: 367 YELEWYIQIEKLIGKKLPEYPAEEDEVLSL 396
>gi|113866560|ref|YP_725049.1| ATP-dependent RNA helicase [Ralstonia eutropha H16]
gi|113525336|emb|CAJ91681.1| ATP-dependent RNA helicase [Ralstonia eutropha H16]
Length = 520
Score = 255 bits (651), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 139/373 (37%), Positives = 207/373 (55%), Gaps = 13/373 (3%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L LS + RA+ +GY PTPIQ + +P IL G D++A A+TG+GKTA F +PMLQ
Sbjct: 3 FSELGLSDKIVRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPMLQL 62
Query: 85 LNQHVPQGG----------VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSME 134
L+ +G VRAL+L+PTR+LA Q + + G+Y LR ++ GG +
Sbjct: 63 LSDSAARGANGAQRPARLPVRALVLTPTRELAAQVEESVRNYGKYLRLRSMVMFGGVGIN 122
Query: 135 SQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILG 194
Q E+L + +I++ATPGRL+ H+S+ + L VE +V DEAD + MGF + KIL
Sbjct: 123 PQIEQLKRGVEIVVATPGRLLDHVSQ-RTIDLSQVELLVLDEADRMLDMGFIHDIRKILN 181
Query: 195 QLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAA 254
L RQ LLFSAT + A L +P + + + + + + +E K
Sbjct: 182 VLPAKRQNLLFSATFSDDIRALADRLLNNPASIEVARRNTTAETVDQRVYPVDRERKREL 241
Query: 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRA 314
L +++R+H Q L+F TKH L ++GL +G+ Q AR +S F++
Sbjct: 242 LAHLVRQH--DWHQVLVFTRTKHGANRLAEQLTKDGLSALAIHGNKSQSARTRALSEFKS 299
Query: 315 RKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
L+ TD+AARGIDI L +V+N+D P P+ +VHR+GR RAG G A S V ++
Sbjct: 300 GTLRLLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAEGEAISLVCVDE 359
Query: 375 MAYLLDLHLFLSK 387
+A L D+ + +
Sbjct: 360 IALLRDIERLIKR 372
>gi|157737720|ref|YP_001490403.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri RM4018]
gi|157699574|gb|ABV67734.1| ATP-dependent RNA helicase RhlE [Arcobacter butzleri RM4018]
Length = 435
Score = 254 bits (650), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 140/369 (37%), Positives = 214/369 (57%), Gaps = 6/369 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F +L L + RAIK +GY PTPIQ K++P+ILS DV+A A+TG+GKTA F +P+LQR
Sbjct: 3 FSNLGLCKEILRAIKEEGYTTPTPIQSKSIPVILSKKDVLAAAQTGTGKTAGFTLPLLQR 62
Query: 85 L---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L N + VRALIL+PTR+LA Q + + G+Y + +++ GG + Q L
Sbjct: 63 LKDSNFKDKKTQVRALILTPTRELAAQVAQSVETYGKYLPFKSAVIFGGVGINPQKALLK 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ DIIIATPGRL+ +S+ + + L +E++V DEAD + MGF + KIL L + RQ
Sbjct: 123 KGVDIIIATPGRLLDLISQ-DSLDLSKIEFLVLDEADRMLDMGFINDIKKILAILPKQRQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
LLFSAT + + + A L+ P LV + S ++ + ++ K LL+++ +
Sbjct: 182 NLLFSATFSNEIKKLADGLLKSPVLVEVSKANSASFKVEQVVHHVDKDRKKELLLHLVNK 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ S QQ L+F TKH L+ ++ + + +G+ Q AR + F+ K L+
Sbjct: 242 N--SWQQVLVFTRTKHGANKLSEALVKDKITSAAIHGNKSQGARTKALDDFKNGKVRVLV 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TD+AARGIDI L +V+N++ P + +VHR+GR RAG G A S V ++ YL +
Sbjct: 300 ATDIAARGIDIEQLPHVVNFELPNVAEDYVHRIGRTGRAGNNGIAISLVCVDEHEYLFGI 359
Query: 382 HLFLSKPIR 390
+ + I+
Sbjct: 360 EKLIKQKIK 368
>gi|409405536|ref|ZP_11253998.1| ATP-dependent RNA helicase [Herbaspirillum sp. GW103]
gi|386434085|gb|EIJ46910.1| ATP-dependent RNA helicase [Herbaspirillum sp. GW103]
Length = 513
Score = 254 bits (650), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 139/373 (37%), Positives = 213/373 (57%), Gaps = 14/373 (3%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F +L LS + RA+ +GY PTPIQ + +P +LSG D++A A+TG+GKTA F +P+LQR
Sbjct: 3 FSALGLSDEIVRAVSEQGYTSPTPIQAQAVPAVLSGGDLLAGAQTGTGKTAGFTLPLLQR 62
Query: 85 L--------NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQ 136
L N H+P +RALIL+PTR+LA Q + ++ G+Y L + + GG + Q
Sbjct: 63 LSAMPRQKINGHLP---IRALILAPTRELAAQVEESVRQYGKYLPLTSACIFGGVGIHPQ 119
Query: 137 FEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL 196
L + DI++ATPGRL+ H+ + ++L+ ++ +V DEAD + MGF + K+L L
Sbjct: 120 IALLKRGVDILVATPGRLLDHMQQ-GTVNLQHIQILVLDEADRMLDMGFIRDIRKVLAAL 178
Query: 197 SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALL 256
RQ LLFSAT + + A + L +P L+ + + + +++KH L
Sbjct: 179 PPKRQNLLFSATFADEIKKLADSLLNNPALIEVARRNSTVEVIAQKIHPVDRDKKHPMLA 238
Query: 257 YMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK 316
++I+ H +Q L+F TKH L +G+ +G+ Q AR ++ F+ K
Sbjct: 239 HLIKTH--QWKQVLVFTRTKHGANKLVEQLARDGITAMAIHGNKSQSARTKALAEFKDGK 296
Query: 317 TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMA 376
LI TD+AARGIDI L +V+N+D P P+ +VHR+GR RAG TG A S V ++
Sbjct: 297 LTALIATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDERD 356
Query: 377 YLLDLHLFLSKPI 389
L D+ F+ + I
Sbjct: 357 LLHDIERFIKREI 369
>gi|42518357|ref|NP_964287.1| RNA helicase [Lactobacillus johnsonii NCC 533]
gi|41582642|gb|AAS08253.1| probable RNA helicase [Lactobacillus johnsonii NCC 533]
Length = 484
Score = 254 bits (650), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 153/450 (34%), Positives = 238/450 (52%), Gaps = 18/450 (4%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F +NL P + +AIKR G++ TPIQ KT+PL+L G DV+ A+TG+GKTAAF +P+LQ
Sbjct: 3 FSEMNLKPEILKAIKRSGFEEATPIQEKTIPLVLEGKDVIGQAQTGTGKTAAFGLPILQN 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L++ ++A+I+ PTR+LA+QT + LGR R+ ++ GG + Q L Q P
Sbjct: 63 LDKQ--HDSIQAIIIEPTRELAIQTQEELFRLGRDEKARVQVVYGGADIRRQIRALKQTP 120
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
I++ TPGRL+ HL + + V+ +V DEAD + MGF + + IL S QTLL
Sbjct: 121 AILVGTPGRLLDHLKR-GTIDISKVKTIVLDEADEMLDMGFIQDIESILKYASSKHQTLL 179
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P + + + DP +V++ + + F ++ EK L +I +
Sbjct: 180 FSATMPKPILRIGEKFMNDPEIVKIKGKELTANLIDQYFVRAKENEKFDILCRLI--DVQ 237
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
+ +IF TK V+ L + G + +GD+ Q R + RFR K L+ TD
Sbjct: 238 NPDLAVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILVATD 297
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
VAARG+DI + +V N+D P P +VHR+GR RAG+ G + +FVT ++ Y+ +
Sbjct: 298 VAARGLDISGVSHVYNYDIPQDPNSYVHRIGRTGRAGQNGMSVTFVTPNEIGYMRTIEQL 357
Query: 385 LSK---PIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVS--DRVREII 439
K P++ EE + K+ + + + + Y ++D S D V ++
Sbjct: 358 THKKMMPLKPPTDEEAFKGQLSAANKKVAELLDSDLSKYTEEASQLLDDYSAIDLVAALL 417
Query: 440 -DSSADLNSLQRTCTNAFRLYSKTKPLPSK 468
D S D +S++ T KPLP K
Sbjct: 418 KDLSKDADSVKVKIT-------PEKPLPFK 440
>gi|18424420|ref|NP_568931.1| DEAD-box ATP-dependent RNA helicase 10 [Arabidopsis thaliana]
gi|108861883|sp|Q8GY84.2|RH10_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 10
gi|10177322|dbj|BAB10648.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
gi|332010025|gb|AED97408.1| DEAD-box ATP-dependent RNA helicase 10 [Arabidopsis thaliana]
Length = 456
Score = 254 bits (650), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 144/390 (36%), Positives = 225/390 (57%), Gaps = 16/390 (4%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L + + +A +R G+K P+ IQ + +P L G DV+ +A+TGSGKT AF +P+LQ
Sbjct: 11 FAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQA 70
Query: 85 LNQHV----PQGGVR------ALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSME 134
L ++V P+ G R A +LSPTR+LA+Q + + LG LR ++LVGG
Sbjct: 71 LLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDRM 130
Query: 135 SQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILG 194
Q L + P +I+ATPGRL H+S+ + SLKS++Y+V DEAD L F + L++IL
Sbjct: 131 QQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILE 190
Query: 195 QLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISP--DLKLAFFTLRQEEKH 252
++ R+T LFSAT+ + + +A LR+P V+++ +K S LK + + + K
Sbjct: 191 EIPLERKTFLFSATMTKKVRKLQRACLRNP--VKIEAASKYSTVDTLKQQYRFVAAKYKD 248
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
L+Y++ E S ++IF T FL ++ R G G M Q R +++F
Sbjct: 249 CYLVYILSEMPES--TSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKF 306
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
+A + L+ TDVA+RG+DIP +D VIN+D P K ++HRVGR ARAGR+G S V
Sbjct: 307 KAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQ 366
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEEEVLLDM 402
++ + + + + K + P+EE+ +L +
Sbjct: 367 YELEWYIQIEKLIGKKLPEYPAEEDEVLSL 396
>gi|448535294|ref|XP_003870949.1| Rrp3 protein [Candida orthopsilosis Co 90-125]
gi|380355305|emb|CCG24822.1| Rrp3 protein [Candida orthopsilosis]
Length = 481
Score = 254 bits (650), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 151/401 (37%), Positives = 223/401 (55%), Gaps = 16/401 (3%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K F LNL P++ AI++ + PTPIQ + +P L G D++ +A TGSGKTAAF +P
Sbjct: 69 KFNTFAELNLVPDLLEAIQQMNFAKPTPIQSEAIPHALEGKDIIGLAVTGSGKTAAFAIP 128
Query: 81 MLQRL-NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139
+LQ L + P G L+L+PTR+LA Q LG LR +VGG M Q +
Sbjct: 129 ILQALWHAQTPYFG---LVLAPTRELAFQIKDTFDALGATMGLRSVCIVGGMDMMDQARD 185
Query: 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSEN 199
L + P II+ATPGR+M HL + SLK+++Y+V DEAD L M F L KIL +
Sbjct: 186 LMRKPHIIVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIPPK 245
Query: 200 RQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTK--ISPDLKLAFFTLRQEEKHAALLY 257
R T LFSAT+ + + + +A L +P VR+ V TK + +L + + K+ L++
Sbjct: 246 RTTYLFSATMTNKIEKLQRASLHNP--VRVAVSTKYQTADNLVQSMMLVNDGYKNTILIH 303
Query: 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKT 317
++ E + + ++F T H + +L R G +G + Q R +++F++ K
Sbjct: 304 LLNEFMG--KSIIVFTRTVAHAQRTALLARILGFNAVPLHGQLSQAQRLGSLNKFKSSKA 361
Query: 318 MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAY 377
L+ TDVAARG+DIP +D VIN+D P K ++HRVGR ARAGR+G + S +T D+
Sbjct: 362 NILVATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEM 421
Query: 378 LLDLHLFLSK--PIRAAPSEEEVLLDMDGVMSKIDQAIANG 416
L + L K P PS+E +D + +D+A A
Sbjct: 422 YLRIENALGKKLPKEEKPSKEV----LDALHIHVDKATAEA 458
>gi|378727302|gb|EHY53761.1| ATP-dependent rRNA helicase RRP3 [Exophiala dermatitidis
NIH/UT8656]
Length = 480
Score = 254 bits (650), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 143/367 (38%), Positives = 216/367 (58%), Gaps = 6/367 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L + ++ A + GYK PTPIQ + +PL L G D++ +A TGSGKTAAF++P+LQ
Sbjct: 53 FKELGIIDSLCEACESLGYKAPTPIQAEAIPLALQGRDLIGLAETGSGKTAAFVLPILQA 112
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L Q + +LIL+PTR+LA Q + + LG +R ++LVGG M +Q L + P
Sbjct: 113 LMDKPQQ--LHSLILAPTRELAYQISEAVEALGSLIAVRCAVLVGGMDMITQAIALGKKP 170
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS-ENRQTL 203
+I+ATPGRL+ HL + SL+ ++Y+V DEAD L + F L KIL L E R+T
Sbjct: 171 HVIVATPGRLLDHLENTKGFSLRQLKYLVMDEADRLLDLDFGPILDKILKILPREGRKTY 230
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDT-KISPDLKLAFFTLRQEEKHAALLYMIREH 262
LFSAT+ S + +A L +P V + D + L ++ + + K L++++ EH
Sbjct: 231 LFSATMSSKVESLQRASLSNPLRVAVSQDKYQTVSTLIQSYLFIPHKHKDLYLIHILNEH 290
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
+ +IF T + + +++L R G +G + Q AR +++FRA+ L+
Sbjct: 291 --AGHTGIIFTRTVNEAQRVSILLRTLGFSAIPIHGQLSQQARLAALNKFRAKSRNLLVA 348
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
+DVAARG+DIP +D VIN+D P K ++HRVGR ARAG++G A SFVT D+ L +
Sbjct: 349 SDVAARGLDIPSVDLVINFDLPQDSKTYIHRVGRTARAGKSGLAISFVTQYDVELWLRIE 408
Query: 383 LFLSKPI 389
L K +
Sbjct: 409 GALGKKL 415
>gi|17555296|ref|NP_499069.1| Protein T26G10.1 [Caenorhabditis elegans]
gi|465975|sp|P34580.1|DDX47_CAEEL RecName: Full=Putative ATP-dependent RNA helicase T26G10.1
gi|3880293|emb|CAA82362.1| Protein T26G10.1 [Caenorhabditis elegans]
Length = 489
Score = 254 bits (650), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 139/358 (38%), Positives = 213/358 (59%), Gaps = 5/358 (1%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K F L +S + A +R G+ P+ IQ+ +P L G DV+ +A TGSGKT AF +P
Sbjct: 42 KEKSFAELGVSQPLCDACQRLGWMKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIP 101
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
+LQ L H PQ L+L+PTR+LA Q + + LG L +++VGG M +Q L
Sbjct: 102 VLQSLLDH-PQA-FFCLVLTPTRELAFQIGQQFEALGSGIGLIAAVIVGGVDMAAQAMAL 159
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
A+ P II+ATPGRL+ HL + +LK++++++ DEAD + M F +L KIL + R
Sbjct: 160 ARRPHIIVATPGRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIPRER 219
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
+T LFSAT+ +++ +A LRDP V + K +LK + + + K L+Y++
Sbjct: 220 RTYLFSATMTKKVSKLERASLRDPARVSVSSRYKTVDNLKQHYIFVPNKYKETYLVYLLN 279
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
EH + ++F +T + V+ R+ G++ +G M Q+ R +++F+++ L
Sbjct: 280 EH--AGNSAIVFCATCATTMQIAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKAREIL 337
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDM-AY 377
+ TDVAARG+DIP +D VIN+D P + K +VHRVGR ARAGR+G A + VT D+ AY
Sbjct: 338 VCTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGIAITVVTQYDVEAY 395
>gi|389576917|ref|ZP_10166945.1| DNA/RNA helicase, superfamily II [Eubacterium cellulosolvens 6]
gi|389312402|gb|EIM57335.1| DNA/RNA helicase, superfamily II [Eubacterium cellulosolvens 6]
Length = 524
Score = 254 bits (650), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 139/381 (36%), Positives = 225/381 (59%), Gaps = 14/381 (3%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L+L + A+ + GY TPIQ KTMP+IL G D++A A+TG+GKTAAF +P+L++
Sbjct: 3 FQELDLKQELQNAVVKAGYTEATPIQEKTMPVILEGRDLIACAQTGTGKTAAFALPILEK 62
Query: 85 L-NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L N V + +R+L+L+PTR+LA+Q + K+ GRY LR + GG + Q E L +
Sbjct: 63 LDNGEVRK--LRSLVLTPTRELAVQIFENFKKYGRYLPLRAVCIYGGAKQKPQMEALRRG 120
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
DI++AT GRLM +++ + +SLK +E V DEAD + MGF + KI G ++ +RQTL
Sbjct: 121 CDILVATLGRLMDYMN-LGLVSLKGIEIFVLDEADRMLDMGFINDVRKIAGSMNTDRQTL 179
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISP--DLKLAFFTLRQEEKHAALLYMIRE 261
+FSAT+P + + + LRDP VR+ + + D K+ F H+ L ++ E
Sbjct: 180 MFSATMPKEIEQLGRELLRDPADVRVAPQSTAADTVDQKICFVG------HSDKLKVLAE 233
Query: 262 HISSDQ--QTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319
+ ++ +T+IF TKH + + G+ +GD Q R+ + ++A
Sbjct: 234 ILKQEEVTRTIIFTRTKHGADRVARNLTRSGIAAKAIHGDKTQGQRQSTLEGYKAGHFHV 293
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLL 379
L+ TDVA+RG+DIP + +VIN++ P +P+ ++HR+GR RAG +G A + ++M L
Sbjct: 294 LVATDVASRGLDIPEVSHVINFNLPQEPEAYIHRIGRTGRAGESGIAITLCEEDEMDLLK 353
Query: 380 DLHLFLSKPIRAAPSEEEVLL 400
++ L + I +E ++L
Sbjct: 354 EVEKILKREIPEMKTEYSIVL 374
>gi|300853611|ref|YP_003778595.1| ATP-dependent RNA helicase [Clostridium ljungdahlii DSM 13528]
gi|300433726|gb|ADK13493.1| predicted ATP-dependent RNA helicase [Clostridium ljungdahlii DSM
13528]
Length = 496
Score = 254 bits (650), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 132/378 (34%), Positives = 229/378 (60%), Gaps = 11/378 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ LS ++ ++I++ GYK P+ +Q K +PLI D++ ++TGSGKTAAF +P+ ++
Sbjct: 21 FKDFALSEDILKSIEKLGYKNPSQVQEKVIPLIFKNKDIIVKSQTGSGKTAAFAIPICEK 80
Query: 85 --LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
L + PQ L+L+PTR+LALQ + ++GR+ + + + G + + +Q +EL Q
Sbjct: 81 IELEEKNPQ----VLVLAPTRELALQIKEDFYDIGRFKRINCTAIFGKEPITTQIKELKQ 136
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
+I+ TPGR + H+ E + +SLK ++Y++ DEAD + MGF +Q+ +L +L +NR T
Sbjct: 137 RTHVIVGTPGRTLDHI-EKDTLSLKKIQYLIIDEADEMLNMGFIDQVKAVLDKLPKNRVT 195
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
LLFSAT+P + + A + +P V +D + + + ++ + +K L ++ +
Sbjct: 196 LLFSATIPQEILKLCAAYMNNPINVEIDAEDPVINRINQIYYQIEAYKKFDLLNKLV--Y 253
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
+ ++IF TK +VE L + + +G S +G M Q R + RF+ + +FL+
Sbjct: 254 TQRPESSMIFCRTKKNVEDLVLQMKGKGYSCSGLHGGMLQSERIDVMKRFKRGEFIFLVC 313
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
TDVAARGID+ + ++IN+D P + + +VHR+GR RAG++GTA +FVT ++ +L ++
Sbjct: 314 TDVAARGIDVENITHIINYDIPMEKESYVHRIGRTGRAGKSGTAITFVTPKEYRFLEEIE 373
Query: 383 LFLSKPIR--AAPSEEEV 398
F + I PS+EEV
Sbjct: 374 KFFNLTIEKGTIPSKEEV 391
>gi|241766307|ref|ZP_04764197.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
gi|241363561|gb|EER58995.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
Length = 448
Score = 254 bits (650), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 133/371 (35%), Positives = 221/371 (59%), Gaps = 9/371 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE LNL+P + +A++ GY+ PTPIQ + +P +L G D++A A+TG+GKTAAF +PML R
Sbjct: 3 FEELNLAPAILKAVQETGYETPTPIQAQAIPAVLEGHDLLAGAQTGTGKTAAFTLPMLHR 62
Query: 85 LNQHV-PQG-----GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138
L+Q P+ G+RAL+L+PTR+LA Q + +E G+Y D+ +++ GG M Q +
Sbjct: 63 LSQGTAPKNKFGGKGIRALVLTPTRELAAQVEESVREYGKYLDINSTVVFGGVGMNPQID 122
Query: 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198
+ + DI++ATPGRL+ L + + L +VE +V DEAD + MGF + K+L + +
Sbjct: 123 RIKRGVDILVATPGRLLD-LQQQGFLDLSTVEVLVLDEADRMLDMGFIHDVKKVLALVPK 181
Query: 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258
++Q+LLFSAT + E A L++P +++ + + + +K LL++
Sbjct: 182 DKQSLLFSATFSDEIRELANTLLKNPQSIQVTPSNTTVQRITQVIHPVGRGKKKQVLLHI 241
Query: 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
I++H S Q L+F TK + + G++ +G+ Q AR ++ F++ +
Sbjct: 242 IQQHNWS--QVLVFTRTKFGANNVAEFLTKNGVQAMALHGNKSQSARTQALAGFKSGEIR 299
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
L+ TD+AARGIDI L +V+N++ P + +VHR+GR RAG +G A S V ++ ++
Sbjct: 300 ALVATDIAARGIDIDDLPHVVNYEIPNVSEDYVHRIGRTGRAGASGEAVSLVCMDEEGFM 359
Query: 379 LDLHLFLSKPI 389
+D+ F + I
Sbjct: 360 MDIERFTKQQI 370
>gi|156037652|ref|XP_001586553.1| hypothetical protein SS1G_12540 [Sclerotinia sclerotiorum 1980]
gi|160380650|sp|A7F4L5.1|DRS1_SCLS1 RecName: Full=ATP-dependent RNA helicase drs1
gi|154697948|gb|EDN97686.1| hypothetical protein SS1G_12540 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 801
Score = 254 bits (650), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 145/357 (40%), Positives = 213/357 (59%), Gaps = 12/357 (3%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+S++LS + R + G+ PTPIQ KT+P+ L G DVV A TGSGKTAAF+VP+L+R
Sbjct: 270 FQSMSLSRPILRGLATVGFTQPTPIQSKTIPVALLGKDVVGGAVTGSGKTAAFIVPVLER 329
Query: 85 L---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L + VP R IL PTR+LA+Q +L +TD++ L VGG S++ Q EL
Sbjct: 330 LLYRPKKVPTS--RVAILMPTRELAIQCHAVATKLASHTDIKFCLAVGGLSLKVQEAELR 387
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
PD+IIATPGR + H+ ++ ++E +V DEAD + GFA++L++IL + ++RQ
Sbjct: 388 LRPDVIIATPGRFIDHMRNSPSFTVDTLEILVLDEADRMLEAGFADELNEILTTIPKSRQ 447
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISP--DLKLAFFTLR--QEEKHAALLY 257
T+LFSAT+ S++ + GL P VRL VD++ S L F LR +E K L
Sbjct: 448 TMLFSATMSSSVDNLIRVGLNRP--VRLLVDSQKSTAGTLTQEFIRLRPGREGKRMGYLL 505
Query: 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKT 317
+ ++ +D + ++F K ++F GL+ + +G M Q+ R V FR K
Sbjct: 506 YLCANVYTD-RVIVFFRQKKEAHRARIIFGLSGLKATELHGSMSQEQRIKSVEAFRDGKA 564
Query: 318 MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
FL+ TD+A+RG+DI +D VIN++ P I++HRVGR ARAGR+G A + D
Sbjct: 565 SFLLATDLASRGLDIKGVDTVINYEAPQSHDIYLHRVGRTARAGRSGRACTIAAEPD 621
>gi|399887774|ref|ZP_10773651.1| ATP-dependent RNA helicase RhlE [Clostridium arbusti SL206]
Length = 418
Score = 254 bits (650), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 138/387 (35%), Positives = 225/387 (58%), Gaps = 7/387 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE+LN+ + +A+K +GY PTPIQ +++P IL G D+ A+TG+GKTAAF +P LQ
Sbjct: 3 FENLNIIDPILKALKDEGYTSPTPIQEQSIPAILEGNDLEGCAQTGTGKTAAFAIPTLQL 62
Query: 85 L--NQHVPQGGV--RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
L + V + + +AL+L+PTR+LA+Q + G+YT L+ +++ GG S Q E L
Sbjct: 63 LYGKKRVEKAPIVIKALVLAPTRELAIQIEESFTSYGKYTGLKNTVIFGGVSQRPQTEAL 122
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
DI+IATPGRL+ L + + +SL+ +E+ V DEAD + MG + +I+ +L +NR
Sbjct: 123 KAGVDILIATPGRLLD-LMQQKYISLQHIEFFVLDEADRMLDMGLGHDVKRIIAKLPKNR 181
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
Q +LFSAT+P ++ + L P V + + + + + + K A L+++++
Sbjct: 182 QNMLFSATMPHKISRLMDSILVKPIKVEVTPVSSTIDTINQKVYFVEKRNKKALLIHLLK 241
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
+ S + L+F TKH + + G+E +G+ Q AR++ +S F+ +K L
Sbjct: 242 D--KSFESVLVFSRTKHGANKITGDLVKAGIEAQAIHGNKSQSARQLALSNFKEKKIRVL 299
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLD 380
+ TD+AARGID+ L +VIN+D P P+ +VHR+GR RAG G A SF +E+ L D
Sbjct: 300 VATDIAARGIDVDKLSHVINFDLPDVPETYVHRIGRTGRAGAEGVALSFCDAEERELLTD 359
Query: 381 LHLFLSKPIRAAPSEEEVLLDMDGVMS 407
+ +SK I ++ ++ + S
Sbjct: 360 IEKVISKSIPVVEDHPYIISNLSSITS 386
>gi|94309401|ref|YP_582611.1| RNA helicase [Cupriavidus metallidurans CH34]
gi|93353253|gb|ABF07342.1| RNA helicase [Cupriavidus metallidurans CH34]
Length = 540
Score = 254 bits (649), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 144/387 (37%), Positives = 213/387 (55%), Gaps = 20/387 (5%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L LS + RA+ +GY PTPIQ + +P IL G D++A A+TG+GKTA F +PMLQ
Sbjct: 3 FSELGLSDKLVRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPMLQL 62
Query: 85 LNQ--------HVPQGG---VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSM 133
L++ + P+G VRAL+L+PTR+LA Q + + G+Y LR ++ GG +
Sbjct: 63 LSETAARANGGNAPRGARPNVRALVLTPTRELAAQVEESVRNYGKYLKLRSMVMFGGVGI 122
Query: 134 ESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKIL 193
Q E L + DI++ATPGRL+ H+++ + L VE +V DEAD + MGF + K+L
Sbjct: 123 NPQIEALRRGVDIVVATPGRLLDHVAQ-RTIDLSHVELLVLDEADRMLDMGFIHDIRKVL 181
Query: 194 GQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHA 253
L RQ LLFSAT + A L +P + + + + F + +E K
Sbjct: 182 NVLPPKRQNLLFSATFSDDIRALADRLLDNPASIEVARRNTTAETVAQRVFPVDRERKRE 241
Query: 254 ALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFR 313
L +++R+H Q L+F TKH L ++GL +G+ Q AR ++ F+
Sbjct: 242 LLAHLVRQH--DWHQVLVFTRTKHGANRLAEQLTKDGLSALAIHGNKSQSARTRALTEFK 299
Query: 314 ARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSE 373
A L+ TD+AARGIDI L +V+N+D P P+ +VHR+GR RAG G A S V +
Sbjct: 300 AGTLRLLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAEGEAISLVCVD 359
Query: 374 DMAYLLDLHLFLSKPIRAAPSEEEVLL 400
+ L D+ + + I E+VLL
Sbjct: 360 EHGLLRDIERLIKRQI------EQVLL 380
>gi|227888879|ref|ZP_04006684.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus johnsonii
ATCC 33200]
gi|227850572|gb|EEJ60658.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus johnsonii
ATCC 33200]
Length = 484
Score = 254 bits (649), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 153/450 (34%), Positives = 238/450 (52%), Gaps = 18/450 (4%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F +NL P + +AIKR G++ TPIQ KT+PL+L G DV+ A+TG+GKTAAF +P+LQ
Sbjct: 3 FSEMNLKPEILKAIKRSGFEEATPIQEKTIPLVLEGKDVIGQAQTGTGKTAAFGLPILQN 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L++ ++A+I+ PTR+LA+QT + LGR R+ ++ GG + Q L Q P
Sbjct: 63 LDKQ--HDSIQAIIIEPTRELAIQTQEELFRLGRDEKARVQVVYGGADIRRQIRALKQTP 120
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
I++ TPGRL+ HL + + V+ +V DEAD + MGF + + IL S QTLL
Sbjct: 121 AILVGTPGRLLDHLKR-GTIDISKVKTIVLDEADEMLDMGFIQDIESILKYASSKHQTLL 179
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P + + + DP +V++ + + F ++ EK L +I +
Sbjct: 180 FSATMPKPILRIGEKFMNDPEIVKIKGKELTANLIDQYFVRAKENEKFDILCRLI--DVQ 237
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
+ +IF TK V+ L + G + +GD+ Q R + RFR K L+ TD
Sbjct: 238 NPDLAVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILVATD 297
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
VAARG+DI + +V N+D P P +VHR+GR RAG+ G + +FVT ++ Y+ +
Sbjct: 298 VAARGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGQNGMSVTFVTPNEIGYMRTIEQL 357
Query: 385 LSK---PIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVS--DRVREII 439
K P++ EE + K+ + + + + Y ++D S D V ++
Sbjct: 358 THKKMMPLKPPTDEEAFKGQLSAANKKVAELLDSDLSKYTEEASQLLDDYSAIDLVAALL 417
Query: 440 -DSSADLNSLQRTCTNAFRLYSKTKPLPSK 468
D S D +S++ T KPLP K
Sbjct: 418 KDLSKDADSVKVKIT-------PEKPLPFK 440
>gi|404329444|ref|ZP_10969892.1| hypothetical protein SvinD2_05074 [Sporolactobacillus vineae DSM
21990 = SL153]
Length = 488
Score = 254 bits (649), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 126/369 (34%), Positives = 218/369 (59%), Gaps = 5/369 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L++S + +A +R G+K TPIQ + +P+ +GADV+ A+TG+GKT AF +PM++
Sbjct: 3 FSELDVSEEILKATERMGFKEMTPIQEQAIPVAKTGADVIGQAQTGTGKTTAFGIPMIEA 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
++ P ++ ++++PTR+LA+Q + +G + +R + GG ++ Q +L ++P
Sbjct: 63 VDTENPD--IQGVVITPTRELAIQNAQELNSIGLFKHVRTVAVYGGQDIQKQIRDLKRHP 120
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
II ATPGRL+ H+ + L +++ +V DEAD + MGF + +H+IL E RQTLL
Sbjct: 121 AIISATPGRLLDHIKR-HTIRLGNIKVIVLDEADEMLNMGFIDDIHEILENTPEERQTLL 179
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P + A+ ++DP ++++ T + + +R+ EK AL + I
Sbjct: 180 FSATMPGPIQHLAEKFMKDPKIIQIKAKTLTVSLIDQEYVKVREPEKFDALTRFL--DIQ 237
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
++ ++F TK V+ L ++ G E +GD+ Q R + + RF+ + L+ TD
Sbjct: 238 MPERAIVFGRTKRRVDELMRALQKRGYEAEGIHGDLTQSKRDLVLRRFKNNEVKLLVATD 297
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
VAARG+DI + +V N+D P P+ +VHR+GR RAG+TG A +F+T + ++L +
Sbjct: 298 VAARGLDISNVTHVYNFDLPQDPESYVHRIGRTGRAGKTGKALTFITPGEFSHLRAIERL 357
Query: 385 LSKPIRAAP 393
+P++ P
Sbjct: 358 TKQPMKQVP 366
>gi|440638773|gb|ELR08692.1| ATP-dependent rRNA helicase rrp3 [Geomyces destructans 20631-21]
Length = 485
Score = 254 bits (649), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 141/356 (39%), Positives = 212/356 (59%), Gaps = 5/356 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L + ++ A + GYK PTPIQ++++P L+G D++ +A TGSGKTAAF +P+LQ
Sbjct: 61 FKDLGVIDSLCEACESLGYKSPTPIQQESIPPALAGRDLIGLAETGSGKTAAFALPILQA 120
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L PQ + L+L+PTR+LA Q K + LG +R +++VGG M +Q L + P
Sbjct: 121 LLDK-PQP-LFGLVLAPTRELAYQISKSFEGLGILISVRCAVIVGGMDMVTQSIALGKKP 178
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
II+ATPGRL+ HL + SL++++Y+V DEAD L + F L KIL L R+T L
Sbjct: 179 HIIVATPGRLLDHLENTKGFSLRALKYLVMDEADRLLDLDFGPILDKILKVLPRERRTYL 238
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVD-TKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
FSAT+ S + +A LRDP V++ + + L ++ + K L+Y++ +
Sbjct: 239 FSATMSSKVESLQRASLRDPLRVQISTNKYQTVSTLLQSYLFIPHPHKDTYLIYLLNDF- 297
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+ Q ++F T + + L +L R G +G + Q AR +++FRA L+ T
Sbjct: 298 -AGQSAIVFTRTVNETQRLAILLRTLGFGAIPLHGQLSQSARLGALNKFRAGSREILVAT 356
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLL 379
DVAARG+DIP +D V+N+D PP K ++HRVGR ARAG++G A S VT D+ L
Sbjct: 357 DVAARGLDIPSVDVVLNYDLPPDSKTYIHRVGRTARAGKSGHAISIVTQYDVEIWL 412
>gi|334312364|ref|XP_001379053.2| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Monodelphis
domestica]
Length = 891
Score = 254 bits (649), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 141/392 (35%), Positives = 225/392 (57%), Gaps = 4/392 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ +NLS + +AI G+K PTPIQ+ +P+ L G D+ A A TG+GKTAAF +P+L+R
Sbjct: 320 FQDMNLSRPLLKAITTMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLER 379
Query: 85 LNQHVPQGGV-RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L Q + R L+L PTR+L +Q TK+L +++ + L VGG ++SQ L
Sbjct: 380 LIYKPRQAPITRVLVLVPTRELGIQVHSVTKQLAQFSTVTTCLAVGGLDVKSQEAALRAG 439
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
PDI+IATPGRL+ HL L S+E ++ DEAD + F EQ+ +I+ S +RQT+
Sbjct: 440 PDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIQMCSHHRQTM 499
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR--QEEKHAALLYMIRE 261
LFSAT+ + + A L++P + ++ +T ++P L+ F +R +E A++ +
Sbjct: 500 LFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVSALLT 559
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+D ++F TK +++L GL+ +G++ Q R + RF+ + L+
Sbjct: 560 RTFTD-HVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILV 618
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TDVAARG+DI + VIN+ P K +VHRVGR ARAGR G + S V E+ L ++
Sbjct: 619 ATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEI 678
Query: 382 HLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAI 413
P++A ++V+L G + K+++ +
Sbjct: 679 VKSAKAPVKARILPQDVILKFRGKIEKMEKDV 710
>gi|423216420|ref|ZP_17202944.1| hypothetical protein HMPREF1074_04476 [Bacteroides xylanisolvens
CL03T12C04]
gi|392690791|gb|EIY84045.1| hypothetical protein HMPREF1074_04476 [Bacteroides xylanisolvens
CL03T12C04]
Length = 374
Score = 254 bits (649), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 132/371 (35%), Positives = 223/371 (60%), Gaps = 6/371 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ LN++ + +AI KGY VPTPIQ K +P L+ D++ A+TG+GKTA+F +P++Q
Sbjct: 3 FKELNITEPILKAIGEKGYTVPTPIQEKAIPPALAKRDILGCAQTGTGKTASFAIPIIQH 62
Query: 85 LN---QHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L + + G++ALIL+PTR+LALQ + + ++T +R ++ GG + Q + L
Sbjct: 63 LQLDKEAARRQGIKALILTPTRELALQISECIDDYSKHTRIRHGVIFGGVNQRPQVDLLR 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ DI++ATPGRL+ +S+ + L +++Y V DEAD + MGF + +IL +L + +Q
Sbjct: 123 KGIDILVATPGRLLDLMSQ-GHIHLDTIQYFVLDEADRMLDMGFIHDIKRILPKLPKEKQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
TL FSAT+P ++ K+ L++P + + + +K + + ++EK L+ ++ +
Sbjct: 182 TLFFSATMPDSIISLTKSLLKNPVKIYITPKSSTVDSIKQVVYFVEKKEKSQLLISILSK 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ DQ LIF TKH+ + + + + G+ +G+ Q AR+ + F++ KT ++
Sbjct: 242 --AEDQSVLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRVMV 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TD+A+RGIDI L VIN+D P P+ +VHR+GR RAG TGTA +F + E+ + D+
Sbjct: 300 ATDIASRGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNTGTALTFCSQEERKLVNDI 359
Query: 382 HLFLSKPIRAA 392
K + A
Sbjct: 360 QKLTGKKLNKA 370
>gi|443316249|ref|ZP_21045701.1| DNA/RNA helicase, superfamily II [Leptolyngbya sp. PCC 6406]
gi|442784157|gb|ELR94045.1| DNA/RNA helicase, superfamily II [Leptolyngbya sp. PCC 6406]
Length = 438
Score = 254 bits (649), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 137/366 (37%), Positives = 211/366 (57%), Gaps = 6/366 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE+L L+ + RA++ +GY PTPIQ K +PL+L G D++A A+TG+GKTA F +P+L +
Sbjct: 3 FETLGLAAGILRAVEDQGYSTPTPIQAKAIPLVLEGKDLMASAQTGTGKTAGFTLPILHK 62
Query: 85 LNQHVPQGG---VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L G RAL+L+PTR+LA Q + G+Y LR +++ GG ++ Q +L
Sbjct: 63 LASAGRGQGRRPPRALVLTPTRELAAQVAESIATYGKYVPLRTAVVFGGVKIQPQIHKLQ 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ D+++ATPGRL+ H+ + + L VE +V DEAD + MGF + ++L +L RQ
Sbjct: 123 RGVDVLVATPGRLLDHVGQ-RTVDLSQVEVLVLDEADRMLDMGFIHDIRRLLNELPAERQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
TL+FSAT + + + A LRDP LV + + + + ++ K L YMI +
Sbjct: 182 TLMFSATFSNEIKKLADDILRDPVLVEVAARNSTADKISQVVHPVDRQRKRELLSYMIGQ 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
H + QQ L+F TKH L +GL+ + +G+ Q AR + F+ L+
Sbjct: 242 H--NWQQVLVFTRTKHGANRLAEQLERDGLKTAAIHGNKSQGARTRALQDFKKGAVRVLV 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TD+AARG+DI L +V+N++ P + +VHR+GR RAG TG A S V+SE+ L +
Sbjct: 300 ATDIAARGLDIDHLPHVVNFELPNVSEDYVHRIGRTGRAGNTGQAVSLVSSEEYPLLRSI 359
Query: 382 HLFLSK 387
L +
Sbjct: 360 ERLLKQ 365
>gi|456063468|ref|YP_007502438.1| DEAD/DEAH box helicase domain-containing protein [beta
proteobacterium CB]
gi|455440765|gb|AGG33703.1| DEAD/DEAH box helicase domain-containing protein [beta
proteobacterium CB]
Length = 427
Score = 254 bits (649), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 137/360 (38%), Positives = 206/360 (57%), Gaps = 6/360 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L LS ++ RAI +GY PTPIQ K++P +L G D++A A+TG+GKTA F +P+LQR
Sbjct: 3 FTDLGLSESILRAISEEGYTSPTPIQEKSIPAVLKGGDLLAAAQTGTGKTAGFTLPILQR 62
Query: 85 LNQHVPQGG---VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L+ GG +R LIL+PTR+LA Q + G+YT L+ +++ GG Q + +A
Sbjct: 63 LSSTAKVGGKRQLRVLILTPTRELAAQVQESVVTYGKYTGLKSTVIFGGVGANPQIKAIA 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
DI++ATPGRL+ +S+ +SL ++E +V DEAD + MGF + KIL L + RQ
Sbjct: 123 AGLDILVATPGRLLDLMSQ-NCVSLANIEILVLDEADRMLDMGFLRDIKKILAALPKQRQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
LLFSAT + + A L P L+ + + + + + +KH L ++I+
Sbjct: 182 NLLFSATFSTEIKALADGLLNSPALIEVARSNSTNEAIAQLIHPVDRNQKHPLLAHLIKS 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ QQ L+F TKH L ++G+ +G+ Q AR ++ F+ K L+
Sbjct: 242 N--QWQQVLVFTRTKHGANKLVTQLEKDGITAMAIHGNKSQSARTKALAEFKDGKITVLV 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TD+AARGIDI L +V+N+D P + +VHR+GR RAG G A S V ++ L D+
Sbjct: 300 ATDIAARGIDIDQLPHVVNYDLPNVSEDYVHRIGRTGRAGSNGVAVSLVCVDEHQMLRDI 359
>gi|317025749|ref|XP_001389716.2| ATP-dependent RNA helicase drs1 [Aspergillus niger CBS 513.88]
Length = 827
Score = 254 bits (649), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 142/358 (39%), Positives = 212/358 (59%), Gaps = 14/358 (3%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ NLS + R + + PTPIQRKT+P+ L G D+V A TGSGKTAAF+VP+L+R
Sbjct: 311 FQEFNLSRPILRGLAGVNFSNPTPIQRKTIPVALLGKDIVGSAVTGSGKTAAFVVPILER 370
Query: 85 L---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L + VP R IL PTR+LA+Q +L YTD+ LVGG S+ Q L
Sbjct: 371 LLFRPRKVPTS--RVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENILK 428
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ PD+IIATPGR + H+ ++ ++E +V DEAD + GFA++L++IL + ++RQ
Sbjct: 429 KRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQ 488
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLA--FFTL---RQEEKHAALL 256
T+LFSAT+ + + + GL P VRL VD K + + L F L R++++ LL
Sbjct: 489 TMLFSATMTDTVDKLIRVGLNRP--VRLMVDAKKNTAVTLVQEFVRLRPGREDKRLGYLL 546
Query: 257 YMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK 316
Y+ +E + + ++F K + ++F GL+ + +G M Q+ R V FR K
Sbjct: 547 YLCKEIYTG--RVIVFFRQKKEAHRVRIIFGLLGLKAAELHGSMSQEQRIKSVENFREGK 604
Query: 317 TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
FL+ TD+A+RG+DI ++ VIN++ P +I++HRVGR ARAGR+G A + D
Sbjct: 605 AAFLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPD 662
>gi|37362659|ref|NP_011932.2| RNA-dependent ATPase RRP3 [Saccharomyces cerevisiae S288c]
gi|81175193|sp|P38712.2|RRP3_YEAST RecName: Full=ATP-dependent rRNA helicase RRP3; AltName:
Full=Ribosomal RNA-processing protein 3
gi|285809971|tpg|DAA06758.1| TPA: RNA-dependent ATPase RRP3 [Saccharomyces cerevisiae S288c]
gi|392298867|gb|EIW09962.1| Rrp3p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 501
Score = 254 bits (649), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 148/396 (37%), Positives = 220/396 (55%), Gaps = 10/396 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F LNL P + +A K Y PTPIQ K +P L G D++ +A+TGSGKTAAF +P+L R
Sbjct: 83 FSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNR 142
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L Q A IL+PTR+LA Q + LG +R + +VGG +M Q +L + P
Sbjct: 143 LWHD--QEPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKP 200
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL-SENRQTL 203
IIIATPGRLM HL + SL+ ++++V DEAD L M F L +IL + ++ R T
Sbjct: 201 HIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTTY 260
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
LFSAT+ S + + +A L +P + + L + K+ L+Y++ E I
Sbjct: 261 LFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFI 320
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+ +IF TK + E L+ L + +GD++Q+ R + F+A K L+ T
Sbjct: 321 G--KTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLDLFKAGKRSILVAT 378
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHL 383
DVAARG+DIP +D V+N+D P K ++HRVGR ARAGR+G + S V+ D+ +L +
Sbjct: 379 DVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEE 438
Query: 384 FLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETI 419
L K + ++ ++L + + K ANGE +
Sbjct: 439 VLGKKLPKESVDKNIILTLRDSVDK-----ANGEVV 469
>gi|197119659|ref|YP_002140086.1| ATP-dependent RNA helicase RhlE [Geobacter bemidjiensis Bem]
gi|197089019|gb|ACH40290.1| ATP-dependent RNA helicase RhlE [Geobacter bemidjiensis Bem]
Length = 471
Score = 254 bits (649), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 137/350 (39%), Positives = 207/350 (59%), Gaps = 5/350 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ NL P V I+ GY PTPIQ + +P ++SG DV+ +A+TG+GKTAAF +PML R
Sbjct: 3 FKQFNLHPKVQAGIEAMGYVTPTPIQLQAIPSVISGQDVLGLAQTGTGKTAAFGLPMLHR 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L Q +G VR L+L+PTR+LA Q +G+ T LR + GG ++ +Q ++L +
Sbjct: 63 LVQE-ERGHVRGLVLAPTRELAEQINDALNGMGKQTRLRSVTVYGGVNINTQIKKLKEGA 121
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
+I++A PGRL+ H+S+ + L VE +V DEAD +F MGF + KIL L RQ L+
Sbjct: 122 EIVVACPGRLLDHISQ-GTIDLSRVEILVLDEADQMFDMGFLPDVRKILRALPGKRQNLM 180
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P + A LR+P V++ T + + A + + Q K L M++ +
Sbjct: 181 FSATMPDDIRRLAHEILRNPVTVQVS-RTAPAATVSHALYPVGQHLKTPLLFEMLKH--T 237
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
+ LIF TKH + + + G + + G++ Q+ R+ + FR ++ TD
Sbjct: 238 DTESVLIFTKTKHRAKRVGEQLEKAGYKATSLQGNLSQNRRQAALDGFRDGTFQIMVATD 297
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
+AARGID+ L+ +VIN+D P P+ + HR+GR RA +TG AF+ VTSED
Sbjct: 298 IAARGIDVSLISHVINYDIPDTPEAYTHRIGRTGRAAKTGDAFTMVTSED 347
>gi|358370127|dbj|GAA86739.1| ATP-dependent RNA helicase [Aspergillus kawachii IFO 4308]
Length = 832
Score = 254 bits (649), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 142/358 (39%), Positives = 212/358 (59%), Gaps = 14/358 (3%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ NLS + R + + PTPIQRKT+P+ L G D+V A TGSGKTAAF+VP+L+R
Sbjct: 316 FQEFNLSRPILRGLAGVNFSNPTPIQRKTIPVALLGKDIVGSAVTGSGKTAAFVVPILER 375
Query: 85 L---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L + VP R IL PTR+LA+Q +L YTD+ LVGG S+ Q L
Sbjct: 376 LLFRPRKVPTS--RVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENILK 433
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ PD+IIATPGR + H+ ++ ++E +V DEAD + GFA++L++IL + ++RQ
Sbjct: 434 KRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQ 493
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLA--FFTL---RQEEKHAALL 256
T+LFSAT+ + + + GL P VRL VD K + + L F L R++++ LL
Sbjct: 494 TMLFSATMTDTVDKLIRVGLNRP--VRLMVDAKKNTAVTLVQEFVRLRPGREDKRLGYLL 551
Query: 257 YMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK 316
Y+ +E + + ++F K + ++F GL+ + +G M Q+ R V FR K
Sbjct: 552 YLCKELYTG--RVIVFFRQKKEAHRVRIIFGLLGLKAAELHGSMSQEQRIKSVENFREGK 609
Query: 317 TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
FL+ TD+A+RG+DI ++ VIN++ P +I++HRVGR ARAGR+G A + D
Sbjct: 610 AAFLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPD 667
>gi|350638693|gb|EHA27049.1| hypothetical protein ASPNIDRAFT_130294 [Aspergillus niger ATCC
1015]
Length = 793
Score = 254 bits (649), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 142/358 (39%), Positives = 212/358 (59%), Gaps = 14/358 (3%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ NLS + R + + PTPIQRKT+P+ L G D+V A TGSGKTAAF+VP+L+R
Sbjct: 284 FQEFNLSRPILRGLAGVNFSNPTPIQRKTIPVALLGKDIVGSAVTGSGKTAAFVVPILER 343
Query: 85 L---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L + VP R IL PTR+LA+Q +L YTD+ LVGG S+ Q L
Sbjct: 344 LLFRPRKVPTS--RVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENILK 401
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ PD+IIATPGR + H+ ++ ++E +V DEAD + GFA++L++IL + ++RQ
Sbjct: 402 KRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQ 461
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLA--FFTL---RQEEKHAALL 256
T+LFSAT+ + + + GL P VRL VD K + + L F L R++++ LL
Sbjct: 462 TMLFSATMTDTVDKLIRVGLNRP--VRLMVDAKKNTAVTLVQEFVRLRPGREDKRLGYLL 519
Query: 257 YMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK 316
Y+ +E + + ++F K + ++F GL+ + +G M Q+ R V FR K
Sbjct: 520 YLCKEIYTG--RVIVFFRQKKEAHRVRIIFGLLGLKAAELHGSMSQEQRIKSVENFREGK 577
Query: 317 TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
FL+ TD+A+RG+DI ++ VIN++ P +I++HRVGR ARAGR+G A + D
Sbjct: 578 AAFLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPD 635
>gi|340347760|ref|ZP_08670864.1| ATP-dependent RNA helicase [Prevotella dentalis DSM 3688]
gi|433652636|ref|YP_007296490.1| DNA/RNA helicase, superfamily II [Prevotella dentalis DSM 3688]
gi|339608706|gb|EGQ13594.1| ATP-dependent RNA helicase [Prevotella dentalis DSM 3688]
gi|433303169|gb|AGB28984.1| DNA/RNA helicase, superfamily II [Prevotella dentalis DSM 3688]
Length = 440
Score = 254 bits (649), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 134/377 (35%), Positives = 223/377 (59%), Gaps = 5/377 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ LN+S + RA+ K Y+ PTPIQ++ +P L G DV+ +A+TG+GKTAAF +P++Q
Sbjct: 3 FQELNISAPILRALTDKNYEQPTPIQQQAIPYALDGEDVLGLAQTGTGKTAAFAIPIIQH 62
Query: 85 LNQH--VPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
L+Q + Q G++ALIL+PTR+LA+Q + + YT +R ++ GG Q ++L +
Sbjct: 63 LDQPDLLRQRGIKALILTPTRELAIQIQECVTDYSHYTRVRSCVIFGGVGQAPQVQQLQR 122
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
DI+IATPGRL+ + + +SL ++ + V DEAD + MGF + +I+ L + RQT
Sbjct: 123 GVDILIATPGRLLDLIGQ-GIISLSTIRHFVLDEADRMLDMGFIHDIRRIIPLLPKRRQT 181
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
L FSAT+P ++A +K+ L +P V + + + ++ + + + +K L ++
Sbjct: 182 LFFSATMPQSIATLSKSILHNPQRVEVAPVSSVVDTIEQQLYYVEKPQKIDRLAQVLTA- 240
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
++ L+F TKH + + + G+ +G+ Q AR+ +S F+ KT ++
Sbjct: 241 -DENRSALVFSRTKHGADKIARKLKARGILCDAIHGNKSQTARQRALSNFKDNKTRVIVA 299
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
TD+AARGIDI L+ V+N+D P + +VHR+GR RAG +G A +F T ED+ L D+
Sbjct: 300 TDIAARGIDIANLELVVNFDMPDVAETYVHRIGRTGRAGHSGLAVTFCTEEDLPMLRDIQ 359
Query: 383 LFLSKPIRAAPSEEEVL 399
+ + A + +E L
Sbjct: 360 KLTGRRLDAQNTLQESL 376
>gi|71279831|ref|YP_267868.1| DEAD-box ATP dependent DNA helicase [Colwellia psychrerythraea 34H]
gi|71145571|gb|AAZ26044.1| ATP-dependent RNA helicase, DEAD box family [Colwellia
psychrerythraea 34H]
Length = 466
Score = 254 bits (649), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 136/369 (36%), Positives = 211/369 (57%), Gaps = 7/369 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L LS + +A++ KGY+ P+PIQ + +P ++SG DV+A A+TG+GKTA F +P+LQR
Sbjct: 8 FTDLGLSEALLKAVRDKGYETPSPIQAQAIPAVISGRDVMAAAQTGTGKTAGFTLPLLQR 67
Query: 85 LN----QHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
L+ V VRALIL+PTR+LA Q + + G+Y +L ++ GG + Q L
Sbjct: 68 LSSSKGNKVSSNNVRALILTPTRELAAQISESIEVYGKYLNLHSMVVFGGVKINPQIARL 127
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
Q D+++ATPGRL+ L + +E + DEAD + MGF + K++ L ++R
Sbjct: 128 RQGVDVLVATPGRLLD-LYNQRAVKFSQLEVFILDEADRMLDMGFIRDIKKLMTALPKDR 186
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
Q LLFSAT + AK + +P + +D + + + + ++ K A L ++I+
Sbjct: 187 QNLLFSATFSPEIRALAKGMVNNPLEISVDAENSTAEKVTQWLTAVDKKRKPAVLTHLIK 246
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
E+ + QQ L+F TKH L EGL + +G+ Q AR ++ F+ L
Sbjct: 247 EN--NWQQVLVFTKTKHGANKLTKHLEAEGLTAAAIHGNKSQGARTKALAAFKDGSVKIL 304
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLD 380
+ TD+AARGIDI LL V+N+D P P+ +VHR+GR ARAG TG A S V ++++ L
Sbjct: 305 VATDIAARGIDIDLLPQVVNFDLPNVPEDYVHRIGRTARAGNTGQALSLVCADELDLLWG 364
Query: 381 LHLFLSKPI 389
+ + + I
Sbjct: 365 IEHVIQQHI 373
>gi|414886235|tpg|DAA62249.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 770
Score = 254 bits (649), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 170/495 (34%), Positives = 258/495 (52%), Gaps = 45/495 (9%)
Query: 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPM 81
+ F LNLS + RA + GY+ PTPIQ +PL L+G D+ A TGSGKTAAF +P+
Sbjct: 161 ANSFLELNLSRPLVRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPV 220
Query: 82 LQRL---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138
L+RL + VP +R LIL+PTR+LA Q ++L ++TD+R L+VGG S + Q
Sbjct: 221 LERLLFRPKRVP--AIRVLILTPTRELAAQVHSMIEKLAQFTDIRCCLIVGGLSTKVQEV 278
Query: 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198
L PDI++ATPGR++ HL + L+ + V+ DEAD L +GF+ ++ +++ +
Sbjct: 279 ALRSMPDIVVATPGRIIDHLRNSLSVGLEDLAVVILDEADRLLELGFSAEIQELIRMCPK 338
Query: 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTL-----RQEEKHA 253
RQT+LFSAT+ + E K L P VRL+ D + L + R+ + A
Sbjct: 339 RRQTMLFSATMTEEIDELIKLSLNKP--VRLEADPSLKRPATLTEEVVRIRRARESNQEA 396
Query: 254 ALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFR 313
LL + + + +IF TK L ++F G++ + +G++ Q R + FR
Sbjct: 397 VLLALCLKTFK--RSVIIFSGTKQSAHRLKIIFGLSGMKAAELHGNLTQAQRLEALELFR 454
Query: 314 ARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSE 373
++ FLI TDVAARGIDI + VIN+ P K ++HRVGR ARAGR G A +FVT +
Sbjct: 455 KQEVDFLIATDVAARGIDIVGVQTVINFACPRDVKTYLHRVGRTARAGREGYAVTFVTDD 514
Query: 374 DMAYL----------LDLHLFLSKPIRAAPSEEEVLLDMDGV-----------------M 406
D + L L + KP+ E L D + +
Sbjct: 515 DRSLLKAIAKKAGSQLKSRIVAEKPVAECAQLIEQLEDQISIIIREEKVEREARKAEMEI 574
Query: 407 SKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLP 466
+K + IA+ + IY R +T ++R ++++ ++A + Q T+ + + L
Sbjct: 575 AKAENMIAHKDEIYSRPKRTW--FATEREKKLLVAAAKESLGQGKSTSGIISAKQAEDLR 632
Query: 467 SKESIRR--GKDLPR 479
KE RR KDLPR
Sbjct: 633 LKEKKRREHEKDLPR 647
>gi|297584103|ref|YP_003699883.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
selenitireducens MLS10]
gi|297142560|gb|ADH99317.1| DEAD/DEAH box helicase domain protein [Bacillus selenitireducens
MLS10]
Length = 528
Score = 254 bits (649), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 155/470 (32%), Positives = 253/470 (53%), Gaps = 24/470 (5%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE N+S ++ RAIK G++ P+PIQ K +P IL G D++ A+TG+GKTAAF +P+L++
Sbjct: 4 FEEFNISKSLMRAIKEMGFEAPSPIQEKVIPTILEGNDLIGQAQTGTGKTAAFGIPILEK 63
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L + V+A+IL+PTR+LA+Q ++L ++ ++ + GG S+ Q ++L +
Sbjct: 64 LKR---TKNVQAIILTPTRELAIQVAGEIQKLSKFQKVQTLPVYGGQSIGQQIKQLKRGV 120
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
DI++ TPGR++ H++ + + L + V DEAD + MGF E + KI+ SE RQTLL
Sbjct: 121 DIVVGTPGRVLDHVNR-KTLDLSKIHTFVLDEADEMLDMGFIEDIEKIIQVSSEERQTLL 179
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P + + + + P V + +P + ++ + ++ K +L +I
Sbjct: 180 FSATMPPPIRKLSNKYMNSPEQVTISKSEVTAPSINQVYYKVLEKNKLDSLCRLIDSE-- 237
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
+ +IF TK V L + G +GD+ Q R + +FR FLI TD
Sbjct: 238 NTDLGIIFCRTKKGVSELAEALQARGYRADGLHGDLTQSQRDSVMKKFRDSSIDFLIATD 297
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL--LDLH 382
VAARGID+ + +V+N+D P P+ +VHR+GR RAGR G A + VT +M +L ++
Sbjct: 298 VAARGIDVQNVTHVVNYDIPQDPESYVHRIGRTGRAGREGIALTLVTPREMKHLRSIENE 357
Query: 383 LFLSKPIRAAPSEEEVLLDMDGVM-SKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDS 441
+ + P + PS EEV+ V S++ I N + + V DL+
Sbjct: 358 IKMKIPSQNLPSVEEVIEKQQDVWKSQVIDMIENDDEGVSHYDAIVTDLL---------- 407
Query: 442 SADLNSLQRTCTNAFRL--YSKTKPLPSKESIRRGKDLPREGLHPMFKNV 489
D ++ T +L YS + + SKE+ G+ ++G+ F NV
Sbjct: 408 --DHYQPEKVVTALMKLAFYSHDEKI-SKETYNFGETGAQKGMTRFFINV 454
>gi|242778101|ref|XP_002479171.1| ATP-dependent RNA helicase (Drs1), putative [Talaromyces stipitatus
ATCC 10500]
gi|218722790|gb|EED22208.1| ATP-dependent RNA helicase (Drs1), putative [Talaromyces stipitatus
ATCC 10500]
Length = 833
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 138/358 (38%), Positives = 214/358 (59%), Gaps = 10/358 (2%)
Query: 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPML 82
G F++ NLS + R + G+ PTPIQRK +P+ L G DVV A TGSGKT AF++P+L
Sbjct: 311 GSFQNYNLSRPILRGLAAVGFTKPTPIQRKAIPVALLGKDVVGGAVTGSGKTGAFIIPIL 370
Query: 83 QRL---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139
+RL + VP R IL PTR+LA+Q +L YTD+ L+GG S+ Q
Sbjct: 371 ERLLYRPRKVPTS--RVAILMPTRELAVQCYNVATKLATYTDITFCQLIGGFSLREQENV 428
Query: 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSEN 199
L + PDIIIATPGR + H+ ++ ++E +V DEAD + GFA++L++IL + ++
Sbjct: 429 LKKRPDIIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKS 488
Query: 200 RQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTL---RQEEKHAALL 256
RQT+LFSAT+ ++ + + GL P + +D + + L F L R++++ A+L+
Sbjct: 489 RQTMLFSATMTDSVDKLIRVGLNRPVRLMVDAKKQTAGTLVQEFVRLRPGREDKRLASLI 548
Query: 257 YMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK 316
++ ++ ++ + +IF K + V+F GL+ + +G M Q+ R V FR K
Sbjct: 549 HLCQQVYAA--RVIIFFRQKKEAHRVRVIFGLFGLKAAELHGSMSQEQRIKSVEDFRDGK 606
Query: 317 TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
FL+ TDVA+RG+DI ++ VIN++ P +I++HRVGR ARAGR+G A + D
Sbjct: 607 VAFLLATDVASRGLDIKGVETVINYEAPQTHEIYLHRVGRTARAGRSGRACTLAADPD 664
>gi|423298414|ref|ZP_17276472.1| hypothetical protein HMPREF1070_05137 [Bacteroides ovatus
CL03T12C18]
gi|392663326|gb|EIY56877.1| hypothetical protein HMPREF1070_05137 [Bacteroides ovatus
CL03T12C18]
Length = 374
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 135/371 (36%), Positives = 218/371 (58%), Gaps = 6/371 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ LN++ + +AI+ KGY VPTPIQ + +P L+ D++ A+TG+GKTA+F +P++Q
Sbjct: 3 FKELNITEPILKAIEEKGYAVPTPIQGEAIPAALAKRDILGCAQTGTGKTASFAIPIIQH 62
Query: 85 LNQHVPQG---GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L + G++ALIL PTR+LALQ + + +YT +R ++ GG + Q + L
Sbjct: 63 LQMNKEAAKCRGIKALILMPTRELALQISECINDYAKYTQVRHGVIFGGVNQRPQVDMLH 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ DI++ATPGRL+ +++ + L ++Y V DEAD + MGF + +IL +L + +Q
Sbjct: 123 KGIDILVATPGRLLDLMNQ-GHIHLDKIQYFVLDEADRMLDMGFIHDIKRILPKLPKEKQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
TL FSAT+P + + L++P VR+ + K S + E+K +LL +
Sbjct: 182 TLFFSATMPDTIISLTNSLLKNP--VRISITPKSSTVDAIEQMVYFVEKKEKSLLLVSIL 239
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
S DQ L+F TKH+ + + + + G+ +G+ Q AR++ + F++ KT ++
Sbjct: 240 QKSEDQSVLVFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQLALGNFKSGKTRVMV 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TD+AARGIDI L VIN+D P P+ +VHR+GR RAG TGTA +F + E+ + D+
Sbjct: 300 ATDIAARGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNTGTALTFCSQEERKLVNDI 359
Query: 382 HLFLSKPIRAA 392
K + A
Sbjct: 360 QKLTGKKLNKA 370
>gi|332525460|ref|ZP_08401618.1| putative ATP-dependent RNA helicase 2 [Rubrivivax benzoatilyticus
JA2]
gi|332108727|gb|EGJ09951.1| putative ATP-dependent RNA helicase 2 [Rubrivivax benzoatilyticus
JA2]
Length = 483
Score = 254 bits (648), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 145/379 (38%), Positives = 219/379 (57%), Gaps = 9/379 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F++L L P + RA+ GY+ TPIQ K +P++L G DV+ A+TG+GKTAAF +P+LQ+
Sbjct: 19 FDTLALDPKLLRAVADAGYRAMTPIQAKAIPIVLDGRDVMGAAQTGTGKTAAFTIPLLQK 78
Query: 85 LNQH------VPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138
+ +H + VRAL+L+PTR+LA Q K ++T LR +++ GG M+ Q
Sbjct: 79 MLRHENTSMSPARHPVRALVLAPTRELADQVAANVKTYAKHTRLRSAVVFGGVDMKPQTA 138
Query: 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198
EL +++IATPGRL+ H+ E + L VEYVV DEAD + +GF L +IL L +
Sbjct: 139 ELKAGVEVLIATPGRLLDHI-EARNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSFLPK 197
Query: 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258
RQTLLFSAT + A + L+DP V + + ++ F+ + ++K A + +
Sbjct: 198 TRQTLLFSATFSPEIKRLAGSYLQDPVTVEVARPNATASTVEQRFYGVGDDDKRATVRQI 257
Query: 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
+R+ S Q ++FV++K L F +GL+ +GD QD R ++ F+A +
Sbjct: 258 LRQRELS--QAIVFVNSKLGAARLARSFERDGLKTQALHGDKSQDERLKALAAFKAGEVD 315
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
L+ TDVAARG+DI L V N+D P + +VHR+GR RAG +G A + VT +D +
Sbjct: 316 LLVATDVAARGLDIADLPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVTLVTRDDTRLI 375
Query: 379 LDLHLFLSKPIRAAPSEEE 397
D+ + K I P E E
Sbjct: 376 GDIEKLIKKKIEIEPFEIE 394
>gi|395243277|ref|ZP_10420264.1| ATP-dependent RNA helicase DeaD [Lactobacillus hominis CRBIP
24.179]
gi|394484507|emb|CCI81272.1| ATP-dependent RNA helicase DeaD [Lactobacillus hominis CRBIP
24.179]
Length = 489
Score = 254 bits (648), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 155/459 (33%), Positives = 244/459 (53%), Gaps = 36/459 (7%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L L P + +AIKR G++ TPIQ +T+PL L G DV+ A+TG+GKTAAF +P+LQ
Sbjct: 3 FSELGLKPEILKAIKRAGFEEATPIQAQTIPLALKGDDVIGQAQTGTGKTAAFGLPILQN 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L++ ++A+++ PTR+LA+QT + LGR R+ ++ GG + Q L Q P
Sbjct: 63 LDKQ--HDSIQAIVIEPTRELAIQTQEELFRLGRDEKARVQVVYGGADIRRQIHALKQTP 120
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
I++ TPGRL+ HL + + + V+ +V DEAD + MGF + + IL S QTLL
Sbjct: 121 AILVGTPGRLLDHLKR-KTIDISQVKTIVLDEADEMLDMGFIQDIESILKYASSKHQTLL 179
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P + ++ + DP +V++ + + F ++ EK L +I +
Sbjct: 180 FSATMPKPIMHISEKFMHDPEIVQIKGKELTANLIDQYFVRAKENEKFDILCRLI--DVQ 237
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
+ ++F TK V+ L + G + +GD+ Q+ R + RFR K L+ TD
Sbjct: 238 NPDLAVVFGRTKRRVDELTRGLQARGYNAAGIHGDLSQNKRMSVLKRFRKGKLDILVATD 297
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
VAARG+DI + +V N+D P P +VHR+GR RAG+ G + +FVT ++ Y+ +
Sbjct: 298 VAARGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGKNGMSVTFVTPNEIGYMRTIENL 357
Query: 385 LSK---PIRAAPSEEEVLLD------------MDGVMSKIDQAIANGETIYGRFPQTVID 429
K P+R PS+EE +DG +SK + A Y + +D
Sbjct: 358 THKKMMPLR-PPSDEEAFKGQLSAANKKVQELLDGDLSKYTEGAAKLLDDY-----SAVD 411
Query: 430 LVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSK 468
LV+ ++++ S D +S++ T KPLP K
Sbjct: 412 LVAALLKDL---SKDADSVKVKIT-------PEKPLPYK 440
>gi|413963566|ref|ZP_11402793.1| DEAD/DEAH box helicase [Burkholderia sp. SJ98]
gi|413929398|gb|EKS68686.1| DEAD/DEAH box helicase [Burkholderia sp. SJ98]
Length = 502
Score = 254 bits (648), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 142/378 (37%), Positives = 214/378 (56%), Gaps = 24/378 (6%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+SL LS + RA+ GY PTPIQ + +P +L G D++A A+TG+GKTA F +P+LQR
Sbjct: 3 FDSLGLSEPLLRAVNELGYSSPTPIQLQAIPAVLKGGDLLAGAQTGTGKTAGFTLPILQR 62
Query: 85 LNQHVPQGG-----VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139
L+Q P G VRALIL+PTR+LA Q + + G+Y L+ +++ GG + Q +
Sbjct: 63 LSQLAPVTGGAKRPVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIDA 122
Query: 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSEN 199
L + DI++ATPGRL+ H+ + + + + +E +V DEAD + MGF + ++L +L
Sbjct: 123 LKRGVDIVVATPGRLLDHMQQ-KTIDVSQLEILVLDEADRMLDMGFIHDIKRVLARLPAK 181
Query: 200 RQTLLFSATLPSALAEFAKAGLRDPHLVRL--------DVDTKISPDLKLAFFTLRQEEK 251
RQ LLFSAT + A + L P L+ + VD KI P + ++ K
Sbjct: 182 RQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAETVDQKIHP--------VDRDRK 233
Query: 252 HAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSR 311
L ++IR + + Q L+F TKH L ++G+ +G+ Q AR +S
Sbjct: 234 RELLTHLIRGN--NWFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALSE 291
Query: 312 FRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVT 371
F+A L+ TD+AARGIDI L +V+N+D P P+ +VHR+GR RAG G A S V
Sbjct: 292 FKAETLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAEGEAVSLVC 351
Query: 372 SEDMAYLLDLHLFLSKPI 389
++ L D+ + +PI
Sbjct: 352 VDEHQLLKDIERLIKRPI 369
>gi|365760375|gb|EHN02100.1| Rrp3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 503
Score = 254 bits (648), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 148/396 (37%), Positives = 222/396 (56%), Gaps = 10/396 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F LNL P + +A K Y PTPIQ K++P L G D++ +A+TGSGKTAAF +P+L R
Sbjct: 85 FNELNLVPELIQACKNLNYSKPTPIQSKSIPPALKGHDIIGLAQTGSGKTAAFAIPILNR 144
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L Q A IL+PTR+LA Q + LG +R + +VGG +M Q +L + P
Sbjct: 145 LWHD--QEPYYACILAPTRELAQQIKEAFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKP 202
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL-SENRQTL 203
IIIATPGRLM HL + SL+ ++++V DEAD L M F L +IL + ++ R T
Sbjct: 203 HIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTTY 262
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
LFSAT+ S + + +A L +P + + L A + K+ L+Y++ E I
Sbjct: 263 LFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQALMVVPGGLKNTYLIYLLNESI 322
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+ +IF TK + E L+ L + +GD++Q+ R + F+A K L+ T
Sbjct: 323 G--KTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGKRSILVAT 380
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHL 383
DVAARG+DIP +D V+N+D P K ++HRVGR ARAGR+G + S V+ D+ +L +
Sbjct: 381 DVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEE 440
Query: 384 FLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETI 419
L + + ++ ++L + + K ANGE +
Sbjct: 441 VLGRKLPKENVDKSIILTLRDSVDK-----ANGEVV 471
>gi|268318827|ref|YP_003292483.1| DEAD-box ATP-dependent RNA helicase [Lactobacillus johnsonii
FI9785]
gi|262397202|emb|CAX66216.1| DEAD-box ATP-dependent RNA helicase [Lactobacillus johnsonii
FI9785]
Length = 484
Score = 254 bits (648), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 152/450 (33%), Positives = 238/450 (52%), Gaps = 18/450 (4%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F +NL P + +AIKR G++ TPIQ KT+PL+L G DV+ A+TG+GKTAAF +P+LQ
Sbjct: 3 FSEMNLKPEILKAIKRSGFEEATPIQEKTIPLVLEGKDVIGQAQTGTGKTAAFGLPILQN 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L++ ++A+I+ PTR+LA+QT + LGR R+ ++ GG + Q L Q P
Sbjct: 63 LDKQ--HDSIQAIIIEPTRELAIQTQEELFRLGRDEKARVQVVYGGADIRRQIRALKQTP 120
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
I++ TPGRL+ HL + + ++ +V DEAD + MGF + + IL S QTLL
Sbjct: 121 AILVGTPGRLLDHLKR-GTIDISKIKTIVLDEADEMLDMGFIQDIESILKYASSKHQTLL 179
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P + + + DP +V++ + + F ++ EK L +I +
Sbjct: 180 FSATMPKPILRIGEKFMNDPEIVKIKGKELTANLIDQYFVRAKENEKFDILCRLI--DVQ 237
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
+ +IF TK V+ L + G + +GD+ Q R + RFR K L+ TD
Sbjct: 238 NPDLAVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILVATD 297
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
VAARG+DI + +V N+D P P +VHR+GR RAG+ G + +FVT ++ Y+ +
Sbjct: 298 VAARGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGQNGMSVTFVTPNEIGYMRTIEQL 357
Query: 385 LSK---PIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVS--DRVREII 439
K P++ EE + K+ + + + + Y ++D S D V ++
Sbjct: 358 THKKMMPLKPPTDEEAFKGQLSAANKKVAELLDSDLSKYTEEASQLLDDYSAIDLVAALL 417
Query: 440 -DSSADLNSLQRTCTNAFRLYSKTKPLPSK 468
D S D +S++ T KPLP K
Sbjct: 418 KDLSKDADSVKVKIT-------PEKPLPFK 440
>gi|296808427|ref|XP_002844552.1| ATP-dependent RNA helicase drs1 [Arthroderma otae CBS 113480]
gi|238844035|gb|EEQ33697.1| ATP-dependent RNA helicase drs1 [Arthroderma otae CBS 113480]
Length = 807
Score = 254 bits (648), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 145/367 (39%), Positives = 221/367 (60%), Gaps = 17/367 (4%)
Query: 19 KSKSGG---FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTA 75
KS SG F++L+LS + R + G+ PTPIQRKT+P+ L G DVV A TGSGKTA
Sbjct: 286 KSNSGAPASFQNLSLSRPILRGLASVGFSTPTPIQRKTIPVALLGKDVVGGAVTGSGKTA 345
Query: 76 AFLVPMLQRL---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
AF+VP+L+RL + VP R IL PTR+LA+Q +L +TD+ LVGG S
Sbjct: 346 AFIVPILERLLYRPRKVPTS--RVAILMPTRELAVQCYNVATKLATFTDITFCQLVGGFS 403
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
+ Q L + PD+IIATPGR + H+ ++ ++E ++ DEAD + GFAE+L++I
Sbjct: 404 LREQENILKKRPDVIIATPGRFIDHMRNSASFTVDTLEILILDEADRMLEDGFAEELNEI 463
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTK--ISPDLKLAFFTL---R 247
L + ++RQT+LFSAT+ S++ + + GL P +RL VD+K L F L R
Sbjct: 464 LTTIPKSRQTMLFSATMTSSVDKLIRVGLNKP--IRLMVDSKKQTVGTLVQEFVRLRPGR 521
Query: 248 QEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKI 307
++++ A L+++ + +S + ++F K + ++F GL+ + +G M Q+ R
Sbjct: 522 EDKRLAYLMFLCKTVYTS--RVIVFFRQKKEAHRVRIVFGLMGLKAAELHGSMSQEQRIK 579
Query: 308 HVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAF 367
V FR K +L+ TD+A+RG+DI ++ VIN++ P +I++HRVGR ARAGR+G A
Sbjct: 580 SVEDFRDGKVSYLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRAC 639
Query: 368 SFVTSED 374
+ D
Sbjct: 640 TIAAEPD 646
>gi|366986679|ref|XP_003673106.1| hypothetical protein NCAS_0A01550 [Naumovozyma castellii CBS 4309]
gi|342298969|emb|CCC66713.1| hypothetical protein NCAS_0A01550 [Naumovozyma castellii CBS 4309]
Length = 748
Score = 254 bits (648), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 141/370 (38%), Positives = 220/370 (59%), Gaps = 7/370 (1%)
Query: 18 KKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77
KK F SL+LS V + + GY P+PIQ T+P+ LSG D++A A TGSGKTAAF
Sbjct: 221 KKQTYANFNSLSLSRPVLKGLATLGYTKPSPIQSATIPVALSGKDIIAGAVTGSGKTAAF 280
Query: 78 LVPMLQRL-NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD-LRISLLVGGDSMES 135
++P+++RL + R ++L+PTR+LA+Q K++G++ + + L VGG ++
Sbjct: 281 MIPVIERLLFKSAKIAATRVIVLTPTRELAIQISDVGKKIGKFINGITFGLAVGGLNLRQ 340
Query: 136 QFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQ 195
Q +EL PDI+IATPGR + H+ ++ SVE +V DEAD + GF E+L++I+
Sbjct: 341 QEQELKARPDIVIATPGRFIDHIRNSASFNVDSVEILVIDEADRMLEEGFQEELNEIMQL 400
Query: 196 LSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE--KHA 253
L RQTLLFSAT+ S + + LR P + +D + + L F +R + K A
Sbjct: 401 LPNKRQTLLFSATMNSKIKQLVSLSLRKPVRIMIDPPKQAASRLTQEFVRIRARDHLKPA 460
Query: 254 ALLYMIREHISSDQQTL-IFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
L +I++ Q+ + +FVS K L ++ G+ + +G + Q+ R V++F
Sbjct: 461 LLFNLIKKLDGYGQKRMVVFVSRKEMAHRLRIILGLLGMNVAELHGSLSQEQRLESVTKF 520
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFV-- 370
++ + LI TD+A+RG+DIP ++ VIN+D P +I++HRVGR ARAGR G + SFV
Sbjct: 521 KSLEIPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVSFVGE 580
Query: 371 TSEDMAYLLD 380
TS + + + D
Sbjct: 581 TSNERSIVRD 590
>gi|160898343|ref|YP_001563925.1| DEAD/DEAH box helicase [Delftia acidovorans SPH-1]
gi|160363927|gb|ABX35540.1| DEAD/DEAH box helicase domain protein [Delftia acidovorans SPH-1]
Length = 598
Score = 254 bits (648), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 142/404 (35%), Positives = 233/404 (57%), Gaps = 15/404 (3%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE LNL+P + +A+ +GY+ PTPIQ + +P +L+G D++A A+TG+GKTAAF +PMLQR
Sbjct: 3 FEELNLAPAILKAVLEEGYENPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPMLQR 62
Query: 85 LNQ-HVPQG-----GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138
L+Q VP+ G+RAL+L+PTR+LA Q + + +Y D+ +++ GG M+ Q +
Sbjct: 63 LSQGQVPRNKFGGKGIRALVLTPTRELAAQVEESVRSYAKYLDINSTVIFGGVGMKPQID 122
Query: 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198
+ + DI++ATPGRL+ L + M L +VE +V DEAD + MGF + K+L + +
Sbjct: 123 RIKKGVDILVATPGRLLD-LQQQGFMDLSTVEVLVLDEADRMLDMGFIHDVKKVLALVPK 181
Query: 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258
++Q+LLFSAT + + A LR+P +++ + + + +K LL++
Sbjct: 182 DKQSLLFSATFSDEIRDLANGLLRNPQSIQVTPSNTTVQRITQVIHPVGRGKKKQVLLHI 241
Query: 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
I E+ S Q L+F TK + + + +G+ Q AR ++ F+ +
Sbjct: 242 INENNWS--QVLVFTRTKFGANNVAEFLTKNNISAMALHGNKSQSARTQALAGFKTGELR 299
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
L+ TD+AARGIDI L +V+N++ P + +VHR+GR RAGR G A S V ++ ++
Sbjct: 300 ALVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGREGHAVSLVCMDEEGFM 359
Query: 379 LDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANG-ETIYG 421
+D+ F + I +VL ++ + IA G +TI+G
Sbjct: 360 MDIERFTKQEIPV-----QVLEGFGPEEGEVAEPIAMGRQTIWG 398
>gi|375107400|ref|ZP_09753661.1| DNA/RNA helicase, superfamily II [Burkholderiales bacterium
JOSHI_001]
gi|374668131|gb|EHR72916.1| DNA/RNA helicase, superfamily II [Burkholderiales bacterium
JOSHI_001]
Length = 492
Score = 254 bits (648), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 143/374 (38%), Positives = 216/374 (57%), Gaps = 9/374 (2%)
Query: 20 SKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLV 79
S F +L L P + RA+ +GY TPIQ K +P++L G DV+ A+TG+GKTAAF +
Sbjct: 20 SAPALFNTLPLDPKLQRAVADQGYASMTPIQAKAIPIVLDGRDVMGAAQTGTGKTAAFSL 79
Query: 80 PMLQRLNQH------VPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSM 133
P+LQ++ +H + VRAL+L+PTR+LA Q K ++T+LR +++ GG M
Sbjct: 80 PLLQKMLKHENASMSPARHPVRALVLAPTRELADQVAANVKAYAKHTNLRSTVVFGGIDM 139
Query: 134 ESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKIL 193
+ Q EL +++IATPGRL+ H+ E ++ L VEYVV DEAD + +GF L +IL
Sbjct: 140 KPQTAELKAGVEVLIATPGRLLDHI-EAKNCVLNQVEYVVLDEADRMLDIGFLPDLQRIL 198
Query: 194 GQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHA 253
L RQTLLFSAT + A + L+DP LV + + +++ F+++ ++K
Sbjct: 199 SYLPRQRQTLLFSATFSPEIKRLANSYLQDPVLVEVARPNATATNVEQRFYSVTDDDKRR 258
Query: 254 ALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFR 313
++ ++R S Q ++FV++K L F +GL+ S +GD QD R + F+
Sbjct: 259 VVMQLLRNR--SLSQAIVFVNSKLGAARLARSFERDGLKTSALHGDKSQDERLKSLDAFK 316
Query: 314 ARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSE 373
L+ TDVAARG+DI L V N+D P + +VHR+GR RAG +G A + VT +
Sbjct: 317 RGDVELLVATDVAARGLDIADLPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVTLVTRD 376
Query: 374 DMAYLLDLHLFLSK 387
D + D+ L K
Sbjct: 377 DARLISDIEKLLKK 390
>gi|374710226|ref|ZP_09714660.1| hypothetical protein SinuC_08385 [Sporolactobacillus inulinus CASD]
Length = 480
Score = 254 bits (648), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 134/377 (35%), Positives = 216/377 (57%), Gaps = 7/377 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L +S V +A R G+ TPIQ + +P+ +G D++ A+TG+GKT AF +PM++
Sbjct: 3 FSELEISQEVKKATDRMGFTDMTPIQEQAIPVAETGVDLIGQAQTGTGKTTAFGIPMIEA 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
+ H ++ ++++PTR+LA+Q + LG Y +R + GG ++ Q +L + P
Sbjct: 63 ADPH--NSDIQGVVITPTRELAIQNAQELNALGFYKKVRTVAIYGGQDIQRQIRDLKRRP 120
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
II ATPGRL+ H+ + L ++ VV DEAD + MGF E +H IL ENRQTLL
Sbjct: 121 SIISATPGRLLDHIKR-RTIRLDQIKVVVLDEADEMLNMGFIEDIHAILEATPENRQTLL 179
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P + A+ + +P +++ T + + ++ +R+ EK AL + I
Sbjct: 180 FSATMPRPIQVLAEKFMHEPKKIQIKAKTLTTSLIDQSYVKVRELEKFDALTRFL--DIQ 237
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
S ++ ++F TK V+ L ++ G E +GD+ Q R + + RF+ + L+ TD
Sbjct: 238 SPERAIVFGRTKRRVDELMRALQKRGYEAEGIHGDLTQSKRDLVLRRFKQNEVKLLVATD 297
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
VAARG+DI + +V N+D P P+ +VHR+GR RAG+TG A +F+T + +L +
Sbjct: 298 VAARGLDISNVTHVYNFDLPQDPESYVHRIGRTGRAGKTGMALTFITPSEFPHLRSIERL 357
Query: 385 LSKPIRA--APSEEEVL 399
+P++ APS EE L
Sbjct: 358 TKQPMKQLNAPSYEEAL 374
>gi|127511883|ref|YP_001093080.1| DEAD/DEAH box helicase [Shewanella loihica PV-4]
gi|126637178|gb|ABO22821.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
Length = 432
Score = 254 bits (648), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 137/369 (37%), Positives = 213/369 (57%), Gaps = 6/369 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FES + +P + AI GY+ TPIQ++ +P I G DV+A A+TG+GKTAAF +P+LQ+
Sbjct: 3 FESFSFAPEILHAISECGYQKMTPIQKEAIPAIRRGQDVLASAQTGTGKTAAFALPILQK 62
Query: 85 L---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
+ + RALIL+PTR+L Q K+ RY + + + GG M++Q ++
Sbjct: 63 MFDSPSDTQRSNTRALILAPTRELVAQVADNIKQYSRYLPISVLTVYGGVKMDTQAAKVK 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ DII+ATPGRL+ HL +++L +V+++V DEAD + MGF + KIL Q++ +RQ
Sbjct: 123 KGADIIVATPGRLLEHLQAC-NLNLSNVDFLVLDEADRMLDMGFITDIQKILQQVNRDRQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
LLFSAT SA+ + A L P L+ +D + + + + Q K L +I +
Sbjct: 182 NLLFSATFSSAVKQLANEMLVKPKLIAVDKQNTTAVTVSQVVYPVEQRRKRELLSELIGK 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ QQ L+F +T+ + L +G+ +V + + Q R+ + F+ K L+
Sbjct: 242 K--NWQQVLVFTATREAADVLVKELNLDGIPSAVVHSEKAQGNRRRALREFKEGKVRALV 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
T+VAARG+DIP L+ V+N+D P + +VHR+GR RAGRTG A S V+ E+ L D+
Sbjct: 300 ATEVAARGLDIPELEYVVNFDLPFLAEDYVHRIGRTGRAGRTGVAISLVSREEERTLADI 359
Query: 382 HLFLSKPIR 390
+ IR
Sbjct: 360 EKLIGNKIR 368
>gi|341877652|gb|EGT33587.1| hypothetical protein CAEBREN_24452 [Caenorhabditis brenneri]
Length = 491
Score = 254 bits (648), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 138/354 (38%), Positives = 212/354 (59%), Gaps = 5/354 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L +S + A R G+ P+ IQ+ +P L G DV+ +A TGSGKT AF +P+LQ
Sbjct: 46 FAELGVSQPLCDACHRLGWVKPSKIQQAALPHALQGKDVIGLAETGSGKTGAFAIPVLQS 105
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L H PQ L+L+PTR+LA Q + + LG L ++++VGG M +Q LA+ P
Sbjct: 106 LLDH-PQA-FFCLVLTPTRELAFQIGQQFEALGSGIGLIVAVIVGGVDMAAQAMALARRP 163
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
II+ATPGRL+ HL + +LK++++++ DEAD + M F +L KIL + R+T L
Sbjct: 164 HIIVATPGRLVDHLENTKGFNLKALKFLIMDEADRILNMDFEVELDKILKVIPRERRTYL 223
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+ +++ +A LRDP V + K +LK + + + K L+Y++ EH
Sbjct: 224 FSATMTKKVSKLERASLRDPARVSISTRYKTVDNLKQHYIFVPNKYKETYLVYLLNEH-- 281
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
+ ++F +T + V+ R+ G++ +G M Q+ R +++F+++ L+ TD
Sbjct: 282 AGNSAIVFCATCATTMQVAVMLRQLGMQAVPLHGQMSQEKRLGSLNKFKSKAREILVCTD 341
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDM-AY 377
VAARG+DIP +D VIN+D P + K +VHRVGR ARAGR+G A + VT D+ AY
Sbjct: 342 VAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGLAITVVTQYDVEAY 395
>gi|224096618|ref|XP_002310673.1| predicted protein [Populus trichocarpa]
gi|222853576|gb|EEE91123.1| predicted protein [Populus trichocarpa]
Length = 462
Score = 254 bits (648), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 151/397 (38%), Positives = 231/397 (58%), Gaps = 11/397 (2%)
Query: 16 QKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTA 75
Q +K + F+ L + + A G+K PT IQ + +P L G D++ +A+TGSGKT
Sbjct: 19 QLEKEEVKSFKDLGICDQLVEACDSLGWKNPTKIQVEAVPHALEGKDLIGLAQTGSGKTG 78
Query: 76 AFLVPMLQRLNQHVPQGGVR---ALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
AF +P+LQ L + Q V+ A +LSPTR+LA+Q + + LG LR +LVGG
Sbjct: 79 AFALPILQALLES-SQKSVQPFFACVLSPTRELAIQIAEQFEALGSGIGLRCGVLVGGVD 137
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
+ Q LA+ P I++ATPGRL+ HLS + SL++++Y+V DEAD L F + L +I
Sbjct: 138 IVQQTLILAKRPHIVVATPGRLLDHLSNTKGFSLRTLKYLVLDEADRLLNEEFEKSLDEI 197
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISP--DLKLAFFTLRQEE 250
L + +R+T LFSAT+ + + +A LR+P V+++ +K S LK + + +
Sbjct: 198 LNVIPRDRKTYLFSATMTKKVKKLQRACLRNP--VKIEAASKYSTVDTLKQQYRFVPSKH 255
Query: 251 KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVS 310
K L+Y++ E S+ ++F T FL ++ R GL G M Q R ++
Sbjct: 256 KDCYLVYILTEM--SNSTAMVFTRTCDATSFLALVLRNLGLRAIPINGHMSQPKRLGALN 313
Query: 311 RFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFV 370
+F+AR+ LI TDVA+RG+DIP +D VIN+D P K ++HRVGR ARAGR+G A S V
Sbjct: 314 KFKARECNVLICTDVASRGLDIPSVDMVINYDVPSNSKDYIHRVGRTARAGRSGVAISLV 373
Query: 371 TSEDMAYLLDLHLFLSKPIRAAPS-EEEVLLDMDGVM 406
++ + L + + K + P+ EEEVL+ +D V+
Sbjct: 374 NQYELEWYLQIENLIGKKLPEFPAQEEEVLMLLDRVI 410
>gi|323354635|gb|EGA86470.1| Rrp3p [Saccharomyces cerevisiae VL3]
Length = 501
Score = 254 bits (648), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 148/396 (37%), Positives = 220/396 (55%), Gaps = 10/396 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F LNL P + +A K Y PTPIQ K +P L G D++ +A+TGSGKTAAF +P+L R
Sbjct: 83 FSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNR 142
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L Q A IL+PTR+LA Q + LG +R + +VGG +M Q +L + P
Sbjct: 143 LWHD--QEPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKP 200
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL-SENRQTL 203
IIIATPGRLM HL + SL+ ++++V DEAD L M F L +IL + ++ R T
Sbjct: 201 HIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTTY 260
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
LFSAT+ S + + +A L +P + + L + K+ L+Y++ E I
Sbjct: 261 LFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFI 320
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+ +IF TK + E L+ L + +GD++Q+ R + F+A K L+ T
Sbjct: 321 G--KTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGKRSILVAT 378
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHL 383
DVAARG+DIP +D V+N+D P K ++HRVGR ARAGR+G + S V+ D+ +L +
Sbjct: 379 DVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEE 438
Query: 384 FLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETI 419
L K + ++ ++L + + K ANGE +
Sbjct: 439 VLGKKLPKESVDKNIILTLRDSVDK-----ANGEVV 469
>gi|160358662|sp|A6ZSX1.1|RRP3_YEAS7 RecName: Full=ATP-dependent rRNA helicase RRP3; AltName:
Full=Ribosomal RNA-processing protein 3
gi|151944009|gb|EDN62302.1| ribosomal RNA processing protein [Saccharomyces cerevisiae YJM789]
gi|190405848|gb|EDV09115.1| weak RNA-dependent ATPase activity which is not specific for rRNA
[Saccharomyces cerevisiae RM11-1a]
gi|256270568|gb|EEU05749.1| Rrp3p [Saccharomyces cerevisiae JAY291]
gi|323333235|gb|EGA74633.1| Rrp3p [Saccharomyces cerevisiae AWRI796]
Length = 501
Score = 254 bits (648), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 148/396 (37%), Positives = 220/396 (55%), Gaps = 10/396 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F LNL P + +A K Y PTPIQ K +P L G D++ +A+TGSGKTAAF +P+L R
Sbjct: 83 FSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNR 142
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L Q A IL+PTR+LA Q + LG +R + +VGG +M Q +L + P
Sbjct: 143 LWHD--QEPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKP 200
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL-SENRQTL 203
IIIATPGRLM HL + SL+ ++++V DEAD L M F L +IL + ++ R T
Sbjct: 201 HIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTTY 260
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
LFSAT+ S + + +A L +P + + L + K+ L+Y++ E I
Sbjct: 261 LFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFI 320
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+ +IF TK + E L+ L + +GD++Q+ R + F+A K L+ T
Sbjct: 321 G--KTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGKRSILVAT 378
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHL 383
DVAARG+DIP +D V+N+D P K ++HRVGR ARAGR+G + S V+ D+ +L +
Sbjct: 379 DVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEE 438
Query: 384 FLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETI 419
L K + ++ ++L + + K ANGE +
Sbjct: 439 VLGKKLPKESVDKNIILTLRDSVDK-----ANGEVV 469
>gi|21593647|gb|AAM65614.1| replication protein A1-like [Arabidopsis thaliana]
Length = 456
Score = 254 bits (648), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 143/390 (36%), Positives = 224/390 (57%), Gaps = 16/390 (4%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L + + +A +R G+K P+ IQ + +P L G DV+ +A+TGSGKT AF +P+LQ
Sbjct: 11 FAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQA 70
Query: 85 LNQHV----PQGGVR------ALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSME 134
L ++V P+ G R A +LSPTR+LA+Q + + LG LR ++L GG
Sbjct: 71 LLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLFGGIDRM 130
Query: 135 SQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILG 194
Q L + P +I+ATPGRL H+S+ + SLKS++Y+V DEAD L F + L++IL
Sbjct: 131 QQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILE 190
Query: 195 QLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISP--DLKLAFFTLRQEEKH 252
++ R+T LFSAT+ + + +A LR+P V+++ +K S LK + + + K
Sbjct: 191 EIPRERKTFLFSATMTKKVRKLQRACLRNP--VKIEAASKYSTVDTLKQQYRFVAAKYKD 248
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
L+Y++ E S ++IF T FL ++ R G G M Q R +++F
Sbjct: 249 CYLVYILSEMPES--TSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKF 306
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
+A + L+ TDVA+RG+DIP +D VIN+D P K ++HRVGR ARAGR+G S V
Sbjct: 307 KAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQ 366
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEEEVLLDM 402
++ + + + + K + P+EE+ +L +
Sbjct: 367 YELEWYIQIEKLIGKKLPEYPAEEDEVLSL 396
>gi|487961|gb|AAB68392.1| Yhr065cp [Saccharomyces cerevisiae]
Length = 543
Score = 254 bits (648), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 148/396 (37%), Positives = 220/396 (55%), Gaps = 10/396 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F LNL P + +A K Y PTPIQ K +P L G D++ +A+TGSGKTAAF +P+L R
Sbjct: 125 FSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNR 184
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L Q A IL+PTR+LA Q + LG +R + +VGG +M Q +L + P
Sbjct: 185 LWHD--QEPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKP 242
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL-SENRQTL 203
IIIATPGRLM HL + SL+ ++++V DEAD L M F L +IL + ++ R T
Sbjct: 243 HIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTTY 302
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
LFSAT+ S + + +A L +P + + L + K+ L+Y++ E I
Sbjct: 303 LFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFI 362
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+ +IF TK + E L+ L + +GD++Q+ R + F+A K L+ T
Sbjct: 363 G--KTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLDLFKAGKRSILVAT 420
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHL 383
DVAARG+DIP +D V+N+D P K ++HRVGR ARAGR+G + S V+ D+ +L +
Sbjct: 421 DVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEE 480
Query: 384 FLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETI 419
L K + ++ ++L + + K ANGE +
Sbjct: 481 VLGKKLPKESVDKNIILTLRDSVDK-----ANGEVV 511
>gi|290891221|ref|ZP_06554283.1| hypothetical protein AWRIB429_1673 [Oenococcus oeni AWRIB429]
gi|419758389|ref|ZP_14284706.1| superfamily II DNA/RNA helicase [Oenococcus oeni AWRIB304]
gi|419856597|ref|ZP_14379318.1| superfamily II DNA/RNA helicase [Oenococcus oeni AWRIB202]
gi|421184782|ref|ZP_15642198.1| superfamily II DNA/RNA helicase [Oenococcus oeni AWRIB318]
gi|421188194|ref|ZP_15645533.1| superfamily II DNA/RNA helicase [Oenococcus oeni AWRIB419]
gi|421192791|ref|ZP_15650044.1| superfamily II DNA/RNA helicase [Oenococcus oeni AWRIB553]
gi|421195104|ref|ZP_15652316.1| superfamily II DNA/RNA helicase [Oenococcus oeni AWRIB568]
gi|421196973|ref|ZP_15654154.1| superfamily II DNA/RNA helicase [Oenococcus oeni AWRIB576]
gi|290479185|gb|EFD87847.1| hypothetical protein AWRIB429_1673 [Oenococcus oeni AWRIB429]
gi|399905011|gb|EJN92462.1| superfamily II DNA/RNA helicase [Oenococcus oeni AWRIB304]
gi|399965751|gb|EJO00317.1| superfamily II DNA/RNA helicase [Oenococcus oeni AWRIB419]
gi|399966384|gb|EJO00933.1| superfamily II DNA/RNA helicase [Oenococcus oeni AWRIB318]
gi|399974369|gb|EJO08532.1| superfamily II DNA/RNA helicase [Oenococcus oeni AWRIB553]
gi|399976292|gb|EJO10318.1| superfamily II DNA/RNA helicase [Oenococcus oeni AWRIB576]
gi|399976888|gb|EJO10901.1| superfamily II DNA/RNA helicase [Oenococcus oeni AWRIB568]
gi|410499642|gb|EKP91073.1| superfamily II DNA/RNA helicase [Oenococcus oeni AWRIB202]
Length = 521
Score = 254 bits (648), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 147/417 (35%), Positives = 235/417 (56%), Gaps = 18/417 (4%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE LSP + A+K+ GY TPIQ KT+PLI+ G DV+ A+TG+GKTAAF +P+L+
Sbjct: 3 FEEFGLSPELLSAVKKHGYDEATPIQEKTIPLIIQGVDVIGQAQTGTGKTAAFGLPILEE 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
++ PQ ++AL++SPTR+LA+QT + +LG ++ ++ GG + Q L ++P
Sbjct: 63 VDPKNPQ--IQALVISPTRELAMQTEEELNKLGSDKHVKTQVVFGGYDIRRQIHALKEHP 120
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
I++ TPGRL+ HL+ + + V+ +V DEAD + MGF E + I+ ++RQTLL
Sbjct: 121 QILVGTPGRLIDHLNR-HTIDFRGVKTLVIDEADEMLNMGFLEDIETIVHYTPDDRQTLL 179
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFF-TLRQEEKHAALLYMIREHI 263
FSAT+P + + ++DP V + ++ DL + R+ EK A+ + +
Sbjct: 180 FSATMPDDIKKIGVKFMKDPEEVHI-ASKGLTIDLVDQYLVNTREYEKFDAMTRLF--DV 236
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+ ++F TK V+ L + G + + +GD+DQ AR + F+ + FL+ T
Sbjct: 237 EQPELAIVFGRTKRRVDELTKALQLRGYKAAGIHGDLDQAARMRTLRSFKKGELQFLVAT 296
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHL 383
DVAARG+DI + +V N+D P P+ +VHR+GR RAG G + +FV ++ YL +
Sbjct: 297 DVAARGLDISGVTHVYNYDVPQDPESYVHRIGRTGRAGHHGVSVTFVVRGEIDYLRAIEK 356
Query: 384 FLSKPIRA--APSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREI 438
++K + A PS EE + +++ A A + G+ T ID V D EI
Sbjct: 357 LINKRMAALKPPSAEEAHI------ARLKNAKAETYAVLGK---TTIDNVEDEATEI 404
>gi|259146813|emb|CAY80069.1| Rrp3p [Saccharomyces cerevisiae EC1118]
gi|365765178|gb|EHN06690.1| Rrp3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 501
Score = 254 bits (648), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 148/396 (37%), Positives = 220/396 (55%), Gaps = 10/396 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F LNL P + +A K Y PTPIQ K +P L G D++ +A+TGSGKTAAF +P+L R
Sbjct: 83 FSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNR 142
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L Q A IL+PTR+LA Q + LG +R + +VGG +M Q +L + P
Sbjct: 143 LWHD--QEPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKP 200
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL-SENRQTL 203
IIIATPGRLM HL + SL+ ++++V DEAD L M F L +IL + ++ R T
Sbjct: 201 HIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTTY 260
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
LFSAT+ S + + +A L +P + + L + K+ L+Y++ E I
Sbjct: 261 LFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFI 320
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+ +IF TK + E L+ L + +GD++Q+ R + F+A K L+ T
Sbjct: 321 G--KTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGKRSILVAT 378
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHL 383
DVAARG+DIP +D V+N+D P K ++HRVGR ARAGR+G + S V+ D+ +L +
Sbjct: 379 DVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEE 438
Query: 384 FLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETI 419
L K + ++ ++L + + K ANGE +
Sbjct: 439 VLGKKLPKESVDKNIILTLRDSVDK-----ANGEVV 469
>gi|50291507|ref|XP_448186.1| hypothetical protein [Candida glabrata CBS 138]
gi|74661162|sp|Q6FNK8.1|RRP3_CANGA RecName: Full=ATP-dependent rRNA helicase RRP3
gi|49527497|emb|CAG61137.1| unnamed protein product [Candida glabrata]
Length = 493
Score = 254 bits (648), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 146/396 (36%), Positives = 224/396 (56%), Gaps = 10/396 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F LNL P + +A + + PTPIQ + +P L+G+DV+ +A+TGSGKTAAF +P+L +
Sbjct: 75 FAQLNLVPELIQACQNLNFTKPTPIQARAIPPALAGSDVIGLAQTGSGKTAAFAIPILNK 134
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L + Q A +L+PTR+LA Q + LG +R + +VGG +M Q +L + P
Sbjct: 135 LWED--QQPYYACVLAPTRELAQQIKETFDSLGSLMGVRTTCIVGGMNMMDQARDLMRKP 192
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL-SENRQTL 203
IIIATPGRLM HL + SLK+++++V DEAD L M F L +IL + ++ R T
Sbjct: 193 HIIIATPGRLMDHLENTKGFSLKNLKFLVMDEADRLLDMEFGPVLDRILKIIPTKGRTTY 252
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
LFSAT+ S + + +A L +P + + L + K+ L+Y++ E I
Sbjct: 253 LFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFI 312
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+ +IF TK + E L+ L + +GD++Q+ R + F+A K L+ T
Sbjct: 313 G--KTVIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVAT 370
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHL 383
DVAARG+DIP +D VIN+D P K ++HRVGR ARAGR+G + S V+ D+ +L +
Sbjct: 371 DVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEE 430
Query: 384 FLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETI 419
L K + ++ ++L + + K ANGE +
Sbjct: 431 VLGKKLPKESVDKNIILTLRDSVDK-----ANGEVV 461
>gi|150025749|ref|YP_001296575.1| DEAD/DEAH box helicase [Flavobacterium psychrophilum JIP02/86]
gi|149772290|emb|CAL43768.1| Probable ATP-dependent RNA helicase, DEAD/DEAH box family
[Flavobacterium psychrophilum JIP02/86]
Length = 414
Score = 254 bits (648), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 137/361 (37%), Positives = 216/361 (59%), Gaps = 7/361 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE L+LS ++ RA+ +GY TPIQ +++P+IL+G D++ A+TG+GKTAAF +P++
Sbjct: 3 FEDLSLSKSIQRAVFEEGYLSATPIQEQSIPIILAGQDLIGCAQTGTGKTAAFAIPIIHN 62
Query: 85 LNQHVPQGG----VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
L++ V +R L+++PTR+LA+Q + G+YT+L+ + GG S Q E+L
Sbjct: 63 LHRIVGSSKKEKLIRTLVVTPTRELAVQIGESFDTYGKYTNLKQLTIFGGVSQNPQVEQL 122
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
DI+IATPGRL+ L + ++L + ++V DEAD + MGF + KI+ +NR
Sbjct: 123 KSGIDILIATPGRLLD-LHKQGFINLDHMHHLVLDEADQMLDMGFINDVKKIVKLTPKNR 181
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSAT+P A+ E A+ L DP V++ + + + + + +K L ++I+
Sbjct: 182 QTLLFSATMPIAIRELAEMFLTDPATVQVAPVSSTIETVDQRLYYVDKADKRQLLYHIIK 241
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
E S+ L+F TKH + + +++GL +GD Q+AR+ + F+ + L
Sbjct: 242 EEKLSN--ILVFSRTKHGADNIAKALKKQGLNAEAIHGDKSQNARQRALDNFKNKACDIL 299
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLD 380
+ TD+AARGIDI L VIN+D P P+ +VHR+GR RAGR G A SF ++ Y D
Sbjct: 300 VATDIAARGIDIEFLPYVINFDLPNIPETYVHRIGRTGRAGREGMAISFCGKDEEGYWKD 359
Query: 381 L 381
+
Sbjct: 360 I 360
>gi|156844737|ref|XP_001645430.1| hypothetical protein Kpol_534p53 [Vanderwaltozyma polyspora DSM
70294]
gi|160380651|sp|A7TJM9.1|DRS1_VANPO RecName: Full=ATP-dependent RNA helicase DRS1
gi|156116092|gb|EDO17572.1| hypothetical protein Kpol_534p53 [Vanderwaltozyma polyspora DSM
70294]
Length = 752
Score = 254 bits (648), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 140/361 (38%), Positives = 218/361 (60%), Gaps = 7/361 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F SL LS V + + GY P+PIQ T+P+ LSG D++A A TGSGKTAAF++P+++R
Sbjct: 233 FNSLTLSRPVLKGLSDLGYTKPSPIQSATIPIGLSGKDIIAGAVTGSGKTAAFMIPIIER 292
Query: 85 L-NQHVPQGGVRALILSPTRDLALQTLKFTKELGRY-TDLRISLLVGGDSMESQFEELAQ 142
L + R ++L+PTR+LA+Q K++G+Y + L L VGG ++ Q +EL
Sbjct: 293 LLYKPAKVASTRVIVLTPTRELAIQIADVGKKIGKYVSGLTFGLAVGGLNLRQQEQELKT 352
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
PDI+IATPGR + H+ ++ SVE +V DEAD + GF E+L++IL L RQT
Sbjct: 353 RPDIVIATPGRFIDHVRNSSSFNVDSVEVLVMDEADRMLEEGFQEELNEILTLLPSKRQT 412
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE--KHAALLYMIR 260
LLFSAT+ S + LR P + ++ + + L F +R+ + K A L Y+IR
Sbjct: 413 LLFSATMNSRIKSLISLSLRKPVRIMINPPKQAAARLTQEFVRIRKRDHLKPALLFYLIR 472
Query: 261 EHISSDQQ-TLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319
+ + Q+ ++FV+ K L ++ G++ +G + Q+ R V+ F++ +
Sbjct: 473 KLDGTGQKRIVVFVARKEMAHKLRIILGLLGMKVGELHGSLTQEQRLQSVNNFKSLEVPV 532
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFV--TSEDMAY 377
LI TD+A+RG+DIP ++ VIN+D P +I++HRVGR ARAGR G + +FV +S+D +
Sbjct: 533 LICTDLASRGLDIPKIEVVINFDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDRSI 592
Query: 378 L 378
+
Sbjct: 593 V 593
>gi|421185572|ref|ZP_15642971.1| superfamily II DNA/RNA helicase [Oenococcus oeni AWRIB418]
gi|399968835|gb|EJO03266.1| superfamily II DNA/RNA helicase [Oenococcus oeni AWRIB418]
Length = 521
Score = 254 bits (648), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 154/458 (33%), Positives = 247/458 (53%), Gaps = 22/458 (4%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE LSP + A+K+ GY TPIQ KT+PLI+ G DV+ A+TG+GKTAAF +P+L+
Sbjct: 3 FEEFGLSPELLSAVKKHGYDEATPIQEKTIPLIIQGVDVIGQAQTGTGKTAAFGLPILEE 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
++ PQ ++AL++SPTR+LA+QT + +LG ++ ++ GG + Q L ++P
Sbjct: 63 VDPKNPQ--IQALVISPTRELAMQTEEELNKLGSDKHVKTQVIFGGYDIRRQIHALKEHP 120
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
I++ TPGRL+ HL+ + + V+ +V DEAD + MGF E + I+ ++RQTLL
Sbjct: 121 QILVGTPGRLIDHLNR-HTIDFRGVKTLVIDEADEMLNMGFLEDIETIVHYTPDDRQTLL 179
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFT-LRQEEKHAALLYMIREHI 263
FSAT+P + + + DP V + ++ DL + R+ EK A+ + +
Sbjct: 180 FSATMPDDIKKIGVKFMEDPEEVHI-ASKGLTIDLVDQYLVNTREYEKFDAMTRLF--DV 236
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+ ++F TK V+ L + G + + +GD+DQ AR + F+ + FL+ T
Sbjct: 237 EQPELAIVFGRTKRRVDELTKALQLRGYKAAGIHGDLDQAARMRTLRSFKKGELQFLVAT 296
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHL 383
DVAARG+DI + +V N+D P P+ +VHR+GR RAG G + +FV ++ YL +
Sbjct: 297 DVAARGLDISGVTHVYNYDVPQDPESYVHRIGRTGRAGHHGVSVTFVVRGEIDYLRAIEK 356
Query: 384 FLSKPIRA--APSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDS 441
++K + A PS EE + +++ A A + G+ T ID V D EI +
Sbjct: 357 LINKRMAALKPPSAEEAHI------ARLKNAKAETYAVLGK---TTIDNVEDEATEIANQ 407
Query: 442 SADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPR 479
+ +T+P+ I + K LPR
Sbjct: 408 YDAKLIAAALLHALSKDDERTRPV----DIAQEKPLPR 441
>gi|358639136|dbj|BAL26433.1| ATP-dependent RNA helicase [Azoarcus sp. KH32C]
Length = 517
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 139/378 (36%), Positives = 215/378 (56%), Gaps = 7/378 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F SL L+ + RAI GY PTPIQ + +PL+L+G D++A A+TG+GKTA F +P+L
Sbjct: 8 FASLGLAEPLLRAISESGYTRPTPIQAQAIPLVLAGGDLLAAAQTGTGKTAGFTLPLLHL 67
Query: 85 LNQH---VPQGG-VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
L+ VP+ G R LIL+PTR+LA Q + + G++ L ++ GG ++ Q L
Sbjct: 68 LSAKPAAVPKAGRPRCLILTPTRELAAQVEESVQTYGKHLPLTSMVMFGGVNINPQIAAL 127
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
+ DI++ATPGRL+ H + + + L VE +V DEAD + MGF + K+L L + R
Sbjct: 128 KKRVDILVATPGRLLDHAGQ-KTVDLSGVEILVLDEADRMLDMGFIRDIRKVLAMLPKQR 186
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
Q LLFSAT + A L +P V + + ++ + + + Q++K L+++++
Sbjct: 187 QNLLFSATFSDEIRSLANGLLNNPGCVEVARRNTTTELVEQSVYFVPQKQKRDLLVHLVK 246
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
EH Q L+F TKH L + G+ + +G+ Q AR +S+F+ L
Sbjct: 247 EH--DWHQVLVFTRTKHGANRLAEYLGKHGIPAAAIHGNKSQSARTKALSQFKDNSLPVL 304
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLD 380
+ TD+AARG+DI L V+N++ P P+ +VHR+GR RAG +G A SFV SE+ +YL
Sbjct: 305 VATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGSSGKAISFVDSEEKSYLTS 364
Query: 381 LHLFLSKPIRAAPSEEEV 398
+ + + I P E V
Sbjct: 365 IERLIKRSIERTPVPEFV 382
>gi|423197250|ref|ZP_17183833.1| hypothetical protein HMPREF1171_01865 [Aeromonas hydrophila SSU]
gi|404631497|gb|EKB28130.1| hypothetical protein HMPREF1171_01865 [Aeromonas hydrophila SSU]
Length = 431
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 138/369 (37%), Positives = 214/369 (57%), Gaps = 6/369 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FES + +P + RAI GY+ TP+Q + +P + G D++A A+TG+GKTAAF +P+LQR
Sbjct: 3 FESFDFAPEILRAISECGYQEMTPVQSQAIPAVRRGRDLLASAQTGTGKTAAFALPILQR 62
Query: 85 LNQH---VPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L + V R LIL+PTR+LA Q + +Y D+ +VGG + Q + L
Sbjct: 63 LVDNPAPVQPSNARVLILTPTRELAAQVASNINDFAKYLDITTLTIVGGGKQDVQAKRLK 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
II+ATPGRL+ HL+ ++SL VE +V DEAD + MGF+ + KIL +++ RQ
Sbjct: 123 AGAHIIVATPGRLLEHLTAC-NLSLSGVETLVLDEADRILDMGFSADVQKILQAVNKTRQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
LLFSAT A+ + A L P +V ++ + + + + Q+ K L +I +
Sbjct: 182 NLLFSATFSEAVKKLANLMLDKPQVVAVNKQNSTADTVSHTVYPVEQKRKRELLSELIGK 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ QQ L+F ST+ + L +G++ +V +GD Q +R+ + F K L+
Sbjct: 242 Q--NWQQVLVFASTRESCDELVEELNLDGIKSAVVHGDKAQGSRRRALREFSEGKLRVLV 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
T+VAARG+DIP L+ V+N+D P + +VHR+GR RAG++G A SFV+ E+ LL++
Sbjct: 300 ATEVAARGLDIPNLEYVVNYDLPFLAEDYVHRIGRTGRAGKSGMAISFVSREEERTLLEI 359
Query: 382 HLFLSKPIR 390
+ + IR
Sbjct: 360 EALIGQKIR 368
>gi|323308818|gb|EGA62055.1| Rrp3p [Saccharomyces cerevisiae FostersO]
Length = 501
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 148/396 (37%), Positives = 220/396 (55%), Gaps = 10/396 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F LNL P + +A K Y PTPIQ K +P L G D++ +A+TGSGKTAAF +P+L R
Sbjct: 83 FSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNR 142
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L Q A IL+PTR+LA Q + LG +R + +VGG +M Q +L + P
Sbjct: 143 LWHD--QEPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKP 200
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL-SENRQTL 203
IIIATPGRLM HL + SL+ ++++V DEAD L M F L +IL + ++ R T
Sbjct: 201 HIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTTY 260
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
LFSAT+ S + + +A L +P + + L + K+ L+Y++ E I
Sbjct: 261 LFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFI 320
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+ +IF TK + E L+ L + +GD++Q+ R + F+A K L+ T
Sbjct: 321 G--KTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGKRSILVAT 378
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHL 383
DVAARG+DIP +D V+N+D P K ++HRVGR ARAGR+G + S V+ D+ +L +
Sbjct: 379 DVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEE 438
Query: 384 FLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETI 419
L K + ++ ++L + + K ANGE +
Sbjct: 439 VLGKKLPKESVDKNIILTLRXSVDK-----ANGEVV 469
>gi|157374161|ref|YP_001472761.1| DEAD/DEAH box helicase [Shewanella sediminis HAW-EB3]
gi|157316535|gb|ABV35633.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
HAW-EB3]
Length = 435
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 134/369 (36%), Positives = 218/369 (59%), Gaps = 6/369 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FES + +P + RAI GY+ TP+Q++ +P I G DV+A A+TG+GKTAAF +P+LQ+
Sbjct: 3 FESFSFAPEILRAISECGYQKMTPVQQEAIPAIRRGQDVLASAQTGTGKTAAFALPILQK 62
Query: 85 LNQH---VPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
+ + + RALIL+PTR+LA Q + +Y ++ + + GG +E+Q ++L
Sbjct: 63 MFDNPTETQRSNTRALILTPTRELASQIADNINDYSKYMEVSVLTIYGGVKLETQAQKLK 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ DII+ATPGRL+ HL +++L +V+++V DEAD + MGF + KI+ +++NRQ
Sbjct: 123 RGADIIVATPGRLLEHLQAC-NLNLSNVDFMVLDEADRMLDMGFISDIQKIMQAVNKNRQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
LLFSAT SA+ + A L P L+ +D + + + + Q K L +I +
Sbjct: 182 NLLFSATFSSAVKKLANDMLVKPKLISVDSQNSTADTVSQVVYPVEQRRKRELLSELIGK 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ QQ L+F +T+ + L +G+ +V +G+ Q R+ + F+ K L+
Sbjct: 242 K--NWQQVLVFTATRDAADKLVKELNLDGITSAVVHGEKAQGNRRRALREFKEGKVRALV 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
T+VAARG+DI L+ V+N+D P + +VHR+GR RAG++G A S V+ E+ L D+
Sbjct: 300 ATEVAARGLDIQDLEYVVNYDLPFLAEDYVHRIGRTGRAGKSGVAISLVSREEERTLADI 359
Query: 382 HLFLSKPIR 390
+ K +R
Sbjct: 360 EKLIGKQLR 368
>gi|117921427|ref|YP_870619.1| DEAD/DEAH box helicase [Shewanella sp. ANA-3]
gi|117613759|gb|ABK49213.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
Length = 433
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 135/369 (36%), Positives = 217/369 (58%), Gaps = 6/369 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FES + P + RAI GY+ TPIQ++ +P I G DV+A A+TG+GKTAAF +P+LQ+
Sbjct: 3 FESFSFCPEILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQK 62
Query: 85 LNQH---VPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
+ ++ + R LIL+PTR+LA Q + +Y + + + GG +E+Q ++L
Sbjct: 63 MVENPSETLKSNARVLILTPTRELAAQVADNVEAYSKYLNFSVLTIYGGVKVETQAQKLK 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ DII+ATPGRL+ HL+ ++SL S++++V DEAD + MGF + KIL +++ RQ
Sbjct: 123 RGADIIVATPGRLLEHLTAC-NLSLSSIDFLVLDEADRMLDMGFNADIQKILQAVNKKRQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
LLFSAT SA+ + A + P ++ D + + + + Q K L +I +
Sbjct: 182 NLLFSATFSSAVKKLANDMMVKPQVISADKQNTTADTVSQVVYPVEQRRKRELLSELIGK 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ QQ L+F +T+ + L +G+ V +G+ Q +R+ + F + K L+
Sbjct: 242 K--NWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFVSGKVRVLV 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
T+VAARG+DIP L+ V+N+D P + +VHR+GR RAG++G A SFV+ E+ L D+
Sbjct: 300 ATEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLADI 359
Query: 382 HLFLSKPIR 390
+ + IR
Sbjct: 360 EKLIGQKIR 368
>gi|225028959|ref|ZP_03718151.1| hypothetical protein EUBHAL_03251 [Eubacterium hallii DSM 3353]
gi|224953734|gb|EEG34943.1| DEAD/DEAH box helicase [Eubacterium hallii DSM 3353]
Length = 529
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 136/372 (36%), Positives = 216/372 (58%), Gaps = 10/372 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L++ P + +A+ G++ +PIQ K +P+ LSG DV+ A+TG+GKTAAF +P+LQ+
Sbjct: 6 FTELDIKPEILKAVANMGFEAMSPIQAKAIPVELSGKDVIGQAQTGTGKTAAFGIPILQK 65
Query: 85 LNQHV--PQGGVRALILSPTRDLALQTLKFTKELGRY-TDLRISLLVGGDSMESQFEELA 141
++ + PQ A++L PTR+LA+Q ++L +Y + ++I + GG + Q L
Sbjct: 66 VDPKLKKPQ----AIVLCPTRELAIQVADEIRKLAKYMSSVKILPIYGGQEISKQIRSLK 121
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
III TPGR+M H+ + + ++ VV DEAD + MGF E + IL + E RQ
Sbjct: 122 AGVQIIIGTPGRMMDHMRR-KTVKFDNIHTVVLDEADEMLDMGFREDIETILNGVPEERQ 180
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
T+LFSAT+P + E A+A ++P ++++ P++ ++ +R + K L ++
Sbjct: 181 TMLFSATMPKPIMELARAYQQNPEIIKVIRKELTVPNITQYYYEVRPKNKSEVLSRLL-- 238
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
I + +++F +TK V+ L + G +GDM Q R + RFR+ KT L+
Sbjct: 239 DIYDPKLSVVFCNTKKGVDELVADLKGRGYFAEGLHGDMKQTMRDRVMHRFRSGKTDILV 298
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TDVAARGID+ +D V N+D P + +VHR+GR RAGRTG AFSFV ++ L D+
Sbjct: 299 ATDVAARGIDVDDVDAVFNYDLPQDEEYYVHRIGRTGRAGRTGMAFSFVVGREVYKLKDI 358
Query: 382 HLFLSKPIRAAP 393
+ I+A P
Sbjct: 359 RRYCKAKIKAQP 370
>gi|357403915|ref|YP_004915839.1| ATP-dependent RNA helicase [Methylomicrobium alcaliphilum 20Z]
gi|351716580|emb|CCE22240.1| ATP-dependent RNA helicase [Methylomicrobium alcaliphilum 20Z]
Length = 425
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 145/367 (39%), Positives = 216/367 (58%), Gaps = 5/367 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FESL L + A+ +GYK PTPIQ+K +PLIL G DV+A A+TG+GKTA F +P+LQR
Sbjct: 3 FESLGLIAQLQTAVAEQGYKTPTPIQQKAIPLILDGRDVMAGAQTGTGKTAGFALPILQR 62
Query: 85 LNQHVPQGG--VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
L++ + + VRALIL PTR+LA+Q + K+ G++ L ++ GG SM Q ++L +
Sbjct: 63 LSETINKKPRPVRALILVPTRELAVQVHQSFKDYGKHVALFSEVIFGGVSMNGQAQQLRR 122
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
DI++ATPGRL+ H + ++ L VE +V DEAD + MGF ++ IL L RQ
Sbjct: 123 GCDIVVATPGRLLDHARQ-GNVDLGRVEILVLDEADRMLDMGFKREVDAILALLPRLRQN 181
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
LLFSAT + + A L DP + T + ++ + +++E K L Y+I
Sbjct: 182 LLFSATFSNEIKTLAGRLLHDPIAIEAPRQTIDADTVEQRIYPIKREYKRELLSYLIGS- 240
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
+ +Q L+FV T+H + L ++G+ V +GD Q AR ++ F++ K L+
Sbjct: 241 -GNWRQVLVFVRTRHGADRLAEQLIKDGIRTGVLHGDKSQGARMRALAGFKSGKIAVLVA 299
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
TD+AARG+DI L +V+N+D P + +VHR+GR RAG G A S V E+ LL +
Sbjct: 300 TDIAARGLDIDQLPHVVNFDLPSVAEDYVHRIGRTGRAGWVGEAISLVCPEEAPMLLAIE 359
Query: 383 LFLSKPI 389
L + I
Sbjct: 360 KLLKRSI 366
>gi|310641357|ref|YP_003946115.1| DEAD/DEAH box helicase [Paenibacillus polymyxa SC2]
gi|386040399|ref|YP_005959353.1| DEAD-box ATP-dependent RNA helicase ydbR [Paenibacillus polymyxa
M1]
gi|309246307|gb|ADO55874.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
polymyxa SC2]
gi|343096437|emb|CCC84646.1| DEAD-box ATP-dependent RNA helicase ydbR [Paenibacillus polymyxa
M1]
Length = 525
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 132/354 (37%), Positives = 213/354 (60%), Gaps = 5/354 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F +L P V +AI G++ TPIQ K++P+ L G D++ A+TG+GKTAAF +PM+ +
Sbjct: 4 FAEFDLEPKVIQAITELGFEEATPIQSKSIPIALQGKDMIGQAQTGTGKTAAFGIPMINK 63
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
++++ + +RALI++PTR+LA+Q + ++L R+ LR + GG + Q L + P
Sbjct: 64 ISKNDEK--IRALIMAPTRELAIQVAEEIEKLSRFKGLRTLPIYGGQDIVRQIRALKKKP 121
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
III TPGRL+ H++ + + L+ V VV DEAD + MGF E + IL Q+ + RQT+L
Sbjct: 122 QIIIGTPGRLLDHINR-KTIKLEDVNTVVLDEADEMLDMGFMEDIQSILKQVPDERQTML 180
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P + A+ L+DP V + +P + A+ + + +K AL +I +
Sbjct: 181 FSATMPPNIKRLAEQFLKDPEHVSVIPKQVSAPLIDQAYIEVPERQKFEALSRLI--DME 238
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
S + ++F TK V+ L ++ G +GD+ Q+ R + +FR L+ TD
Sbjct: 239 SPELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLVATD 298
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
VAARG+D+ + +V+N+D P P+ +VHR+GR RAG+ G A+SFVT ++ +L
Sbjct: 299 VAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGEAWSFVTPREIDHL 352
>gi|380492419|emb|CCF34618.1| ATP-dependent rRNA helicase RRP3 [Colletotrichum higginsianum]
Length = 481
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 145/381 (38%), Positives = 223/381 (58%), Gaps = 12/381 (3%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L + ++ A GY PTPIQ +++P L+ D++ +A TGSGKTAAF +P++Q
Sbjct: 54 FKDLGVVDSLCDACANLGYTKPTPIQAQSIPHALANRDIIGLAETGSGKTAAFALPVIQA 113
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L + PQ L+L+PTR+LA Q + + LG LR +++VGG M +Q L + P
Sbjct: 114 LLEK-PQAFF-GLVLAPTRELAAQIGQQFEALGSLISLRTAVIVGGLDMVAQAIALGKKP 171
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
+IIATPGRL+ HL + + SL+S++Y+V DEAD L M F + KIL + R+T L
Sbjct: 172 HVIIATPGRLVDHLEKTKGFSLRSLKYLVMDEADRLLDMDFGPSIDKILKFVPRERRTFL 231
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTK----ISPDLKLAFFTLRQEEKHAALLYMIR 260
FSAT+ S + +A LRDP VR+ + + +S L+ F + +K L+Y++
Sbjct: 232 FSATMSSKIESLQRASLRDP--VRVSISSNKYQTVSTLLQYYLF-IPHTQKDVHLIYLLN 288
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
EH + ++ +IF T + L +L R G +G ++Q AR +++FR L
Sbjct: 289 EH--AGKKIMIFTRTVAETQRLAILLRSLGFGAIPLHGQLNQTARLGALNKFRTGTRSIL 346
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLD 380
+ TDVAARG+D+P +D V+N D P K F+HR+GR ARAG++G A S VT D+ L
Sbjct: 347 VATDVAARGLDVPAVDVVVNHDLPQDSKTFIHRIGRTARAGKSGIALSLVTQYDLEIFLR 406
Query: 381 LHLFLSKPIRAAPSE-EEVLL 400
+ L K + P++ +EV++
Sbjct: 407 IEAALGKKLDEYPTQKDEVMV 427
>gi|419859243|ref|ZP_14381898.1| superfamily II DNA/RNA helicase [Oenococcus oeni DSM 20252 =
AWRIB129]
gi|410496792|gb|EKP88271.1| superfamily II DNA/RNA helicase [Oenococcus oeni DSM 20252 =
AWRIB129]
Length = 521
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 154/458 (33%), Positives = 247/458 (53%), Gaps = 22/458 (4%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE LSP + A+K+ GY TPIQ KT+PLI+ G DV+ A+TG+GKTAAF +P+L+
Sbjct: 3 FEEFGLSPELLSAVKKHGYDEATPIQEKTIPLIIQGVDVIGQAQTGTGKTAAFGLPILEE 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
++ PQ ++AL++SPTR+LA+QT + +LG ++ ++ GG + Q L ++P
Sbjct: 63 VDPKNPQ--IQALVISPTRELAMQTEEELNKLGSDKHVKTQVVFGGYDIRRQIHALKEHP 120
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
I++ TPGRL+ HL+ + + V+ +V DEAD + MGF E + I+ ++RQTLL
Sbjct: 121 QILVGTPGRLIDHLNR-HTIDFRGVKTLVIDEADEMLNMGFLEDIETIVHYTPDDRQTLL 179
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFT-LRQEEKHAALLYMIREHI 263
FSAT+P + + + DP V + ++ DL + R+ EK A+ + +
Sbjct: 180 FSATMPDDIKKIGVKFMEDPEEVHI-ASKGLTIDLVDQYLVNTREYEKFDAMTRLF--DV 236
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+ ++F TK V+ L + G + + +GD+DQ AR + F+ + FL+ T
Sbjct: 237 EQPELAIVFGRTKRRVDELTKALQLRGYKAAGIHGDLDQAARMRTLRSFKKGELQFLVAT 296
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHL 383
DVAARG+DI + +V N+D P P+ +VHR+GR RAG G + +FV ++ YL +
Sbjct: 297 DVAARGLDISGVTHVYNYDVPQDPESYVHRIGRTGRAGHHGVSVTFVVRGEIDYLRAIEK 356
Query: 384 FLSKPIRA--APSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDS 441
++K + A PS EE + +++ A A + G+ T ID V D EI +
Sbjct: 357 LINKRMAALKPPSAEEAHI------ARLKNAKAETYAVLGK---TTIDNVEDEATEIANQ 407
Query: 442 SADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPR 479
+ +T+P+ I + K LPR
Sbjct: 408 YDAKLIAAALLHALSKDDERTRPV----DIAQEKPLPR 441
>gi|284037338|ref|YP_003387268.1| DEAD/DEAH box helicase [Spirosoma linguale DSM 74]
gi|283816631|gb|ADB38469.1| DEAD/DEAH box helicase domain protein [Spirosoma linguale DSM 74]
Length = 485
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 134/368 (36%), Positives = 226/368 (61%), Gaps = 8/368 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L+L + +A+ +GY PTPIQ K +P++LS D++ A+TG+GKTAAF +P+LQ
Sbjct: 3 FSELSLIDPILKALTEEGYTNPTPIQEKAIPILLSRRDLLGCAQTGTGKTAAFAIPILQL 62
Query: 85 LNQHVPQ--GG---VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139
L++ + GG ++ LIL+PTR+LA+Q + GR+ ++R +++ GG S SQ
Sbjct: 63 LSEERSKSTGGPRRIKTLILTPTRELAIQIAESFTAYGRHLNIRNTVIFGGVSQHSQVNT 122
Query: 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSEN 199
L D++IATPGRL+ +++ +SL+ V++ V DEAD + MGF + K++ +L +
Sbjct: 123 LKAGVDVLIATPGRLLDLMNQ-GFISLRDVQFFVLDEADRMLDMGFIHDVKKVITKLPTH 181
Query: 200 RQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI 259
RQ+L FSAT+P +A+ A L +P V + + + ++ A + + +E+K L++++
Sbjct: 182 RQSLFFSATMPPDVAKLADTILNNPAKVEVTPVSSTADTIEQAMYFVGKEDKRKLLVHIL 241
Query: 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319
+ + + L+F TKH + + + G+ +G+ Q+AR+ +S F++R+T
Sbjct: 242 DD--KNIKSALVFARTKHGADKVVKDLLKAGIGAEAIHGNKSQNARQRALSNFKSRETRV 299
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLL 379
L+ TD+AARGID+ L +VIN++ P P+ +VHR+GR RAG G A SF +E+ YL
Sbjct: 300 LVATDIAARGIDVDELSHVINYELPNIPETYVHRIGRTGRAGHDGIALSFCDAEETEYLR 359
Query: 380 DLHLFLSK 387
D+H + K
Sbjct: 360 DIHKLIGK 367
>gi|388580558|gb|EIM20872.1| DEAD-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 801
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 143/376 (38%), Positives = 222/376 (59%), Gaps = 19/376 (5%)
Query: 20 SKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLV 79
+K F SL LS + +AI G+ PTPIQ+ MP+ L+G DVV A TGSGKTAAF++
Sbjct: 202 NKKNTFTSLGLSRPILKAISGLGFTHPTPIQKTVMPVALAGKDVVGQAVTGSGKTAAFIL 261
Query: 80 PMLQRLNQHVPQ-----GGVRALILSPTRDLALQTLKFTKELGRYT-DLRISLLVGGDSM 133
P+L+RL + P+ G R L+L PTR+LA Q + + L ++ D+ L VGG S+
Sbjct: 262 PVLERL-MYRPKTSSKGGETRVLVLCPTRELAQQCFEVGQSLSKFMGDISFCLCVGGLSL 320
Query: 134 ESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKIL 193
+ Q ++L Q PD++IATPGRL+ H+ +L +++ ++ DEAD + GF ++L +I+
Sbjct: 321 KLQEQQLKQRPDVVIATPGRLIDHVRNSPSFTLDALDILIMDEADRMLEDGFKDELDEIV 380
Query: 194 GQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISP--DLKLAFFTLRQ--- 248
+ +NRQT+LFSAT+ + E + L P VRL VD K S L F +R
Sbjct: 381 KECPKNRQTMLFSATMTDKVDELVRLSLNKP--VRLFVDPKKSTAKGLTQEFVRIRSNSK 438
Query: 249 ---EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDAR 305
+E+ A LL + R Q+T+IF +K + ++F L +GD+ Q+ R
Sbjct: 439 NDLKERTATLLSLCRRTFK--QRTIIFFRSKALAHRMRIMFGLMELNAEELHGDLSQEQR 496
Query: 306 KIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGT 365
+ RF+ +K+ +L+ TD+A+RG+DI ++ VIN+D P + +I++HRVGR ARAG +G
Sbjct: 497 LNALERFKNQKSDYLLATDLASRGLDIKGVETVINFDLPNQIEIYLHRVGRTARAGTSGR 556
Query: 366 AFSFVTSEDMAYLLDL 381
+ S + D L ++
Sbjct: 557 SVSLIGETDRKMLKNI 572
>gi|367044830|ref|XP_003652795.1| hypothetical protein THITE_2114564 [Thielavia terrestris NRRL 8126]
gi|347000057|gb|AEO66459.1| hypothetical protein THITE_2114564 [Thielavia terrestris NRRL 8126]
Length = 490
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 149/378 (39%), Positives = 217/378 (57%), Gaps = 6/378 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L + ++ A R GYK PTPIQ +++PL L G D++ +A TGSGKTAAF +P+LQ
Sbjct: 64 FRDLGIVDSLCDACDRLGYKRPTPIQEQSIPLALQGRDIIGIAETGSGKTAAFALPILQA 123
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L PQ + AL+L+PTR+LA Q + + LG LR +L++GG M Q L + P
Sbjct: 124 LLDK-PQP-LFALVLAPTRELAAQITQAFEALGSLISLRCALILGGLDMVQQAIALGKKP 181
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
+++ATPGRL+ HL + + SL++++Y+V DEAD L M F L KIL L R+T L
Sbjct: 182 HVVVATPGRLLDHLEKTKGFSLRNLKYLVMDEADRLLDMDFGPILEKILKFLPRERRTFL 241
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVD-TKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
FSAT+ S + +A LRDP V + + L + + K L+Y+ E
Sbjct: 242 FSATMSSKVESLQRASLRDPLKVSISSSKYQTVATLVQNYLFIPHMHKDTYLIYLCNEF- 300
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+ Q +IF T + + +L R G+ +G + Q AR +++FRA L+ T
Sbjct: 301 -AGQTIIIFTRTVLETQRIAILLRTLGMGAIPLHGGLSQSARLGALNKFRAGSRNILVAT 359
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHL 383
DVAARG+DIP +D V+N+D P K +VHRVGR ARAG++G A S VT D+ L +
Sbjct: 360 DVAARGLDIPNVDCVLNFDLPQDSKTYVHRVGRTARAGKSGHAISIVTQYDIEIWLRIEA 419
Query: 384 FL-SKPIRAAPSEEEVLL 400
L +K A ++EV++
Sbjct: 420 ALGTKLTEYALEKDEVMV 437
>gi|258405603|ref|YP_003198345.1| DEAD/DEAH box helicase [Desulfohalobium retbaense DSM 5692]
gi|257797830|gb|ACV68767.1| DEAD/DEAH box helicase domain protein [Desulfohalobium retbaense
DSM 5692]
Length = 403
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 136/351 (38%), Positives = 211/351 (60%), Gaps = 5/351 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F++ +L + I G+ PTPIQ + +PL L G DV+ +A+TG+GKTAAF++P+LQR
Sbjct: 3 FDAFSLHEKITTGIAACGFTQPTPIQAQALPLALEGKDVLGLAQTGTGKTAAFVLPILQR 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L P+ VRALI+SPTR+LA QT++ +LGR+T L+ + + GG + Q +++
Sbjct: 63 LMSG-PRRRVRALIVSPTRELAEQTVQVCNQLGRHTGLKAAAVYGGVGKKPQVDKIRSGA 121
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
+II+A PGRL+ HL++ +LK VE +V DEAD +F MGF +H+IL L RQ +L
Sbjct: 122 EIIVACPGRLLDHLTD-RSFNLKQVEMLVLDEADRMFDMGFLPDIHRILSYLPAQRQNML 180
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P+ + + L DP VR+D + K S ++ A + + + K LL ++ +
Sbjct: 181 FSATMPADIRALTEKLLVDPAEVRIDHE-KPSANISQALYPVEAQHKTPMLLKILED--E 237
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
D TL+F TKH L + G + + +G++ Q R+ ++ FR+ + L+ TD
Sbjct: 238 PDALTLVFTKTKHGARKLAQKLKASGYKAADLHGNLSQAQRRTAMAGFRSGRFTILVATD 297
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDM 375
+AARGID+ + VIN+D P + + HR+GR R R+G A S + DM
Sbjct: 298 IAARGIDVERIARVINFDMPDTAENYTHRIGRTGRIDRSGLAMSLIARGDM 348
>gi|297568967|ref|YP_003690311.1| DEAD/DEAH box helicase domain protein [Desulfurivibrio alkaliphilus
AHT2]
gi|296924882|gb|ADH85692.1| DEAD/DEAH box helicase domain protein [Desulfurivibrio alkaliphilus
AHT2]
Length = 442
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 139/367 (37%), Positives = 211/367 (57%), Gaps = 5/367 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L L + RA+ GY P+PIQ K +P++L G D++A A+TG+GKTA F +P+LQR
Sbjct: 3 FNELGLRAELLRAVSESGYSQPSPIQSKAIPVVLQGGDLLAGAQTGTGKTAGFALPLLQR 62
Query: 85 LNQHVPQGG--VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
L++ Q +RAL+L+PTR+LA Q + G++ LR +++ GG S+ Q L Q
Sbjct: 63 LSEKPAQKSRPIRALVLTPTRELAAQVEASFRLYGKHLPLRTTVVFGGVSIRPQITTLRQ 122
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
DI++ATPGRL+ H+S+ + + L VE +V DEAD + MGF + KIL L RQ
Sbjct: 123 GVDILVATPGRLLDHVSQ-KTIDLSKVEMLVLDEADRMLDMGFLRDIRKILALLPIQRQN 181
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
LLFSAT + A L+ P L+ + + + A + + + K A L ++I
Sbjct: 182 LLFSATFSDEIKRLADGLLKSPTLIEVARRNTAAEQVDQAIYRIDKGLKRALLSHLISGQ 241
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
+ QQ L+F TKH L ++G+ + +G+ Q AR ++ F+ K L+
Sbjct: 242 --NWQQVLVFTRTKHGANRLAGQLAKDGISSTAIHGNKSQGARTRALADFKQGKVRVLVA 299
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
TD+AARG+DI L +V+N++ P P+ +VHR+GR RAG +G A SFV +E+ L D+
Sbjct: 300 TDIAARGLDIEQLPHVVNYELPNVPEDYVHRIGRTGRAGCSGNAISFVCAEEHKQLHDIE 359
Query: 383 LFLSKPI 389
L + I
Sbjct: 360 SLLKRRI 366
>gi|81429227|ref|YP_396228.1| ATP-dependent RNA helicase [Lactobacillus sakei subsp. sakei 23K]
gi|78610870|emb|CAI55922.1| Putative ATP-dependent RNA helicase [Lactobacillus sakei subsp.
sakei 23K]
Length = 530
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 141/379 (37%), Positives = 223/379 (58%), Gaps = 11/379 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L LS + +AI R G++ TPIQ +T+PL L+G DV+ A+TG+GKTAAF +P+LQ
Sbjct: 3 FSELGLSEPIMKAISRAGFEEATPIQGETIPLALAGKDVIGQAQTGTGKTAAFGLPILQN 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L+ P ++ALI+SPTR+LA+QT + LGR ++ ++ GG + Q L +P
Sbjct: 63 LDLDNPD--IQALIISPTRELAIQTQEELYRLGRDRKAKVQVVYGGADIRRQIRSLKDHP 120
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
I++ TPGRL+ H++ + L V+ +V DEAD + MGF + + I+ Q+ E RQTLL
Sbjct: 121 QILVGTPGRLLDHINR-RTVKLDHVKTLVLDEADEMLDMGFVDDIESIIKQVPEKRQTLL 179
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQE-EKHAALLYMIREHI 263
FSATLP+ + + K+ + +P ++++ +++ DL ++ ++ EK + + +
Sbjct: 180 FSATLPAPIMKIGKSFMTNPEMIKVK-SKELTADLIDQYYVRAKDFEKFDIMTRLF--DV 236
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
S + TLIF TK V+ L + G +GD+ Q R + F+A + L+ T
Sbjct: 237 QSPELTLIFGRTKRRVDELTRGLKARGYNAEGIHGDLSQQKRMSVLKSFKAGRLDVLVAT 296
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHL 383
DVAARG+DI + +V N+D P P +VHR+GR RAG++G + +FVT +M YL +
Sbjct: 297 DVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGKSGVSVTFVTPNEMEYLRIIEE 356
Query: 384 FLSK---PIRAAPSEEEVL 399
K P++ PSE+E
Sbjct: 357 LTKKRMLPLQ-PPSEKEAF 374
>gi|298385203|ref|ZP_06994762.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 1_1_14]
gi|383122089|ref|ZP_09942788.1| hypothetical protein BSIG_5243 [Bacteroides sp. 1_1_6]
gi|251837561|gb|EES65653.1| hypothetical protein BSIG_5243 [Bacteroides sp. 1_1_6]
gi|298262347|gb|EFI05212.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. 1_1_14]
Length = 374
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 130/371 (35%), Positives = 225/371 (60%), Gaps = 6/371 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ LN++ + +AI+ KGY VPTPIQ K +P+ L+ D++ A+TG+GKTA+F +P++Q
Sbjct: 3 FKELNITEPILKAIEEKGYTVPTPIQEKAIPVALAKKDILGCAQTGTGKTASFAIPIIQH 62
Query: 85 LNQHVPQG---GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L+ + +G G++ALIL+PTR+LALQ + ++ +YT +R ++ GG + Q + L
Sbjct: 63 LHLNKGEGKRSGIKALILTPTRELALQISECIEDYSKYTRIRHGVIFGGVNQRPQVDMLH 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ DI++ATPGRL+ +++ + L +++Y V DEAD + MGF + +IL +L + +Q
Sbjct: 123 KGIDILVATPGRLLDLMNQ-GHIRLDNIQYFVLDEADRMLDMGFIHDIKRILPKLPKEKQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
TL FSAT+P + + L++P + + + +K + + ++EK L+ ++++
Sbjct: 182 TLFFSATMPDTIIALTNSLLKNPLKIYVTPKSSTVDSIKQLVYFVEKKEKSLLLISILQK 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
S D+ LIF TKH+ + + + + G+ +G+ Q AR+ + F++ KT ++
Sbjct: 242 --SEDRSVLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRVMV 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TD+A+RGIDI L VIN+D P P+ +VHR+GR RAG G A +F + E+ + D+
Sbjct: 300 ATDIASRGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNAGMALTFCSQEERKQINDI 359
Query: 382 HLFLSKPIRAA 392
K + A
Sbjct: 360 QKLTGKKLNRA 370
>gi|340960548|gb|EGS21729.1| ATP-dependent rRNA helicase rrp3-like protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 492
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 149/378 (39%), Positives = 216/378 (57%), Gaps = 6/378 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L + ++ A +R GYK PTPIQ + +PL L D++ +A TGSGKTAAF +P+LQ
Sbjct: 72 FADLGIVESLCEACERLGYKRPTPIQEQAIPLALQNRDLIGIAETGSGKTAAFALPILQA 131
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L PQ + AL+L+PTR+LA Q + + LG LR +L++GG M Q L + P
Sbjct: 132 LLDK-PQP-LFALVLAPTRELAAQIAQAFEALGSMISLRCALILGGLDMVQQAIALGKKP 189
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
+I+ATPGRL+ HL + + SL++++Y+V DEAD L M F L KIL L R+T L
Sbjct: 190 HVIVATPGRLLDHLEKTKGFSLRNLKYLVMDEADRLLDMDFGPILEKILKFLPRERRTFL 249
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVD-TKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
FSAT+ S + +A LRDP V + + L + + K L+Y++ E
Sbjct: 250 FSATMSSKVESLQRASLRDPLKVSISTSKYQTVSTLVQHYIFIPHIHKDTYLIYLVNEF- 308
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+ + +IF T + + +L R G+ +G + Q AR +++FRA L+ T
Sbjct: 309 -AGKTIIIFTRTVLETQRIAILLRTLGMGAIPLHGGLSQSARLGALNKFRAGSRNILVAT 367
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHL 383
DVAARG+DIP +D V+N+D P K +VHRVGR ARAG++G A SFVT D+ L
Sbjct: 368 DVAARGLDIPNVDCVLNFDLPQDSKTYVHRVGRTARAGKSGHAISFVTQYDLEIWLRTEA 427
Query: 384 FLSKPIRAAPSE-EEVLL 400
L + P E +EV++
Sbjct: 428 ALGYKLTEYPLEKDEVMV 445
>gi|116628939|ref|YP_814111.1| superfamily II DNA/RNA helicase [Lactobacillus gasseri ATCC 33323]
gi|238853538|ref|ZP_04643910.1| cold-shock DEAD box protein A [Lactobacillus gasseri 202-4]
gi|311111251|ref|ZP_07712648.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
gasseri MV-22]
gi|420147753|ref|ZP_14655028.1| ATP-dependent RNA helicase DeaD [Lactobacillus gasseri CECT 5714]
gi|116094521|gb|ABJ59673.1| Superfamily II DNA and RNA helicase [Lactobacillus gasseri ATCC
33323]
gi|238833834|gb|EEQ26099.1| cold-shock DEAD box protein A [Lactobacillus gasseri 202-4]
gi|311066405|gb|EFQ46745.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Lactobacillus
gasseri MV-22]
gi|398400900|gb|EJN54431.1| ATP-dependent RNA helicase DeaD [Lactobacillus gasseri CECT 5714]
Length = 485
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 137/378 (36%), Positives = 212/378 (56%), Gaps = 9/378 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F +NL P + +AIKR G++ TPIQ KT+PL+L G DV+ A+TG+GKTAAF +P+LQ
Sbjct: 3 FSEMNLKPEILKAIKRSGFEEATPIQEKTIPLVLEGKDVIGQAQTGTGKTAAFGLPILQN 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L++ ++A+++ PTR+LA+QT + LGR R+ ++ GG + Q L Q P
Sbjct: 63 LDKQ--HDSIQAIVIEPTRELAIQTQEELFRLGRDEKARVQVVYGGADIRRQIRALKQTP 120
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
I++ TPGRL+ HL + + V+ +V DEAD + MGF + + IL S QTLL
Sbjct: 121 AILVGTPGRLLDHLKR-GTIDISKVKTIVLDEADEMLDMGFIQDIESILNYASSKHQTLL 179
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P + + + DP +V++ + + F ++ EK L +I +
Sbjct: 180 FSATMPKPILRIGEKFMHDPEIVKIKGKELTANLIDQYFVRAKENEKFDILCRLI--DVQ 237
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
+ +IF TK V+ L + G + +GD+ Q R + RFR K L+ TD
Sbjct: 238 NPDLAVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILVATD 297
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
VAARG+DI + +V N+D P P +VHR+GR RAG+ G + +FVT ++ Y+ +
Sbjct: 298 VAARGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGQNGMSVTFVTPNEIGYMRTIEQL 357
Query: 385 LSK---PIRAAPSEEEVL 399
K P++ P++EE
Sbjct: 358 THKKMMPLK-PPTDEEAF 374
>gi|154492527|ref|ZP_02032153.1| hypothetical protein PARMER_02161 [Parabacteroides merdae ATCC
43184]
gi|154087752|gb|EDN86797.1| DEAD/DEAH box helicase [Parabacteroides merdae ATCC 43184]
Length = 419
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 133/371 (35%), Positives = 221/371 (59%), Gaps = 6/371 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE L L + +A+K++ Y PTPIQ + +P++L G+D++ A+TG+GKTAAF +P++Q+
Sbjct: 3 FEQLELIEPIRKALKKEKYTTPTPIQAEAIPVVLDGSDLLGCAQTGTGKTAAFSIPIIQK 62
Query: 85 LNQHVPQG---GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
+ + + +G G++ALIL+PTR+LA+Q + GRYT ++ +++ GG + Q + L
Sbjct: 63 IEERISRGRKPGIKALILTPTRELAIQIGESFTAYGRYTHVKHTVIFGGVGQKPQTDALE 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ D++IATPGRL+ +++ + L ++EY V DEAD + MGF + +IL L RQ
Sbjct: 123 RGVDVLIATPGRLLDLINQ-GFIRLDTLEYFVLDEADRMLDMGFIHDIKRILPLLPRKRQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
+L FSAT+P + A L +P V + + + + + + + EK L ++ +
Sbjct: 182 SLFFSATMPPEIERLAGTILHEPEKVEVTPVSSTVDTIDQSVYFVEKVEKINLLKNLLED 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
S + L+F TKH + + + + G+ +G+ Q AR+ +S F+ LI
Sbjct: 242 R--SLESVLVFTRTKHGADKVARVLNKSGIGAEAIHGNKGQSARQRALSSFKDHTLRVLI 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TD+A+RGID+ L +VIN+D P P+ +VHR+GR RAGR+G AFSF E++ YL D+
Sbjct: 300 ATDIASRGIDVDHLSHVINYDLPNVPETYVHRIGRTGRAGRSGIAFSFCDVEEVPYLKDI 359
Query: 382 HLFLSKPIRAA 392
+ K + A
Sbjct: 360 QKLIGKEVPVA 370
>gi|323348235|gb|EGA82484.1| Rrp3p [Saccharomyces cerevisiae Lalvin QA23]
Length = 543
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 148/396 (37%), Positives = 220/396 (55%), Gaps = 10/396 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F LNL P + +A K Y PTPIQ K +P L G D++ +A+TGSGKTAAF +P+L R
Sbjct: 125 FSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNR 184
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L Q A IL+PTR+LA Q + LG +R + +VGG +M Q +L + P
Sbjct: 185 LWHD--QEPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKP 242
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL-SENRQTL 203
IIIATPGRLM HL + SL+ ++++V DEAD L M F L +IL + ++ R T
Sbjct: 243 HIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTTY 302
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
LFSAT+ S + + +A L +P + + L + K+ L+Y++ E I
Sbjct: 303 LFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFI 362
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+ +IF TK + E L+ L + +GD++Q+ R + F+A K L+ T
Sbjct: 363 G--KTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGKRSILVAT 420
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHL 383
DVAARG+DIP +D V+N+D P K ++HRVGR ARAGR+G + S V+ D+ +L +
Sbjct: 421 DVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEE 480
Query: 384 FLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETI 419
L K + ++ ++L + + K ANGE +
Sbjct: 481 VLGKKLPKESVDKNIILTLRDSVDK-----ANGEVV 511
>gi|300362413|ref|ZP_07058589.1| ATP-dependent RNA helicase DeaD [Lactobacillus gasseri JV-V03]
gi|300353404|gb|EFJ69276.1| ATP-dependent RNA helicase DeaD [Lactobacillus gasseri JV-V03]
Length = 485
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 137/378 (36%), Positives = 212/378 (56%), Gaps = 9/378 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F +NL P + +AIKR G++ TPIQ KT+PL+L G DV+ A+TG+GKTAAF +P+LQ
Sbjct: 3 FSEMNLKPEILKAIKRSGFEEATPIQEKTIPLVLEGKDVIGQAQTGTGKTAAFGLPILQN 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L++ ++A+++ PTR+LA+QT + LGR R+ ++ GG + Q L Q P
Sbjct: 63 LDKQ--HDSIQAIVIEPTRELAIQTQEELFRLGRDEKARVQVVYGGADIRRQIRALKQTP 120
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
I++ TPGRL+ HL + + V+ +V DEAD + MGF + + IL S QTLL
Sbjct: 121 AILVGTPGRLLDHLKR-GTIDISKVKTIVLDEADEMLDMGFIQDIESILNYASSKHQTLL 179
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P + + + DP +V++ + + F ++ EK L +I +
Sbjct: 180 FSATMPKPILRIGEKFMHDPEIVKIKGKELTANLIDQYFVRAKENEKFDILCRLI--DVQ 237
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
+ +IF TK V+ L + G + +GD+ Q R + RFR K L+ TD
Sbjct: 238 NPDLAVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILVATD 297
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
VAARG+DI + +V N+D P P +VHR+GR RAG+ G + +FVT ++ Y+ +
Sbjct: 298 VAARGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGQNGMSVTFVTPNEIGYMRTIEQL 357
Query: 385 LSK---PIRAAPSEEEVL 399
K P++ P++EE
Sbjct: 358 THKKMMPLK-PPTDEEAF 374
>gi|411008819|ref|ZP_11385148.1| DEAD box family ATP-dependent RNA helicase [Aeromonas aquariorum
AAK1]
Length = 431
Score = 253 bits (646), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 138/369 (37%), Positives = 214/369 (57%), Gaps = 6/369 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FES + +P + RAI GY+ TP+Q + +P + G D++A A+TG+GKTAAF +P+LQR
Sbjct: 3 FESFDFAPEILRAISECGYQEMTPVQSQAIPAVRRGRDLLASAQTGTGKTAAFALPILQR 62
Query: 85 LNQH---VPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L + V R LIL+PTR+LA Q + +Y D+ +VGG + Q + L
Sbjct: 63 LVDNPAPVQPSNARVLILTPTRELAAQVASNINDFAKYLDITTLTIVGGGKQDVQAKRLK 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
II+ATPGRL+ HL+ ++SL VE +V DEAD + MGF+ + KIL +++ RQ
Sbjct: 123 AGAHIIVATPGRLLEHLTAC-NLSLSGVETLVLDEADRILDMGFSADVQKILQAVNKTRQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
LLFSAT A+ + A L P +V ++ + + + + Q+ K L +I +
Sbjct: 182 NLLFSATFSEAVKKLANLMLDKPQVVAVNKQNSTADTVSHTVYPVEQKRKRELLSELIGK 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ QQ L+F ST+ + L +G++ +V +GD Q +R+ + F K L+
Sbjct: 242 Q--NWQQVLVFASTRESCDELVEELNLDGIKSAVVHGDKAQGSRRRALREFTEGKLRVLV 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
T+VAARG+DIP L+ V+N+D P + +VHR+GR RAG++G A SFV+ E+ LL++
Sbjct: 300 ATEVAARGLDIPNLEYVVNYDLPFLAEDYVHRIGRTGRAGKSGMAISFVSREEERTLLEI 359
Query: 382 HLFLSKPIR 390
+ + IR
Sbjct: 360 EALIGQKIR 368
>gi|188591276|ref|YP_001795876.1| ATP-dependent RNA helicase hydrolase [Cupriavidus taiwanensis LMG
19424]
gi|170938170|emb|CAP63156.1| ATP-dependent RNA helicase hydrolase [Cupriavidus taiwanensis LMG
19424]
Length = 516
Score = 253 bits (646), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 140/373 (37%), Positives = 208/373 (55%), Gaps = 13/373 (3%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L LS + RA+ +GY PTPIQ + +P IL G D++A A+TG+GKTA F +PMLQ
Sbjct: 3 FSELGLSEKIVRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPMLQL 62
Query: 85 LNQHVPQ-------GG---VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSME 134
L++ + GG VRAL+L+PTR+LA Q + + G+Y LR ++ GG +
Sbjct: 63 LSETAARQAGGAQRGGRVAVRALVLTPTRELAAQVEESVRNYGKYLRLRSMVMFGGVGIN 122
Query: 135 SQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILG 194
Q E+L + +I++ATPGRL+ H+S+ + L VE +V DEAD + MGF + KIL
Sbjct: 123 PQIEQLKRGVEIVVATPGRLLDHVSQ-RTIDLSQVELLVLDEADRMLDMGFIHDIRKILN 181
Query: 195 QLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAA 254
L RQ LLFSAT + A L +P + + + + + + +E K
Sbjct: 182 VLPAKRQNLLFSATFSDDIRALADRLLNNPASIEVARRNTTAETVDQRVYPVDRERKREL 241
Query: 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRA 314
L +++R+H Q L+F TKH L ++GL +G+ Q AR +S F+A
Sbjct: 242 LAHLVRQH--DWHQVLVFTRTKHGANRLAEQLTKDGLSALAIHGNKSQSARTRALSEFKA 299
Query: 315 RKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
L+ TD+AARGIDI L +V+N+D P P+ +VHR+GR RAG G A S V ++
Sbjct: 300 GTLRLLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAEGEAISLVCVDE 359
Query: 375 MAYLLDLHLFLSK 387
+ L D+ + +
Sbjct: 360 LGLLRDIERLIKR 372
>gi|238484285|ref|XP_002373381.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus flavus
NRRL3357]
gi|317140428|ref|XP_001818181.2| ATP-dependent RNA helicase drs1 [Aspergillus oryzae RIB40]
gi|91206589|sp|Q2UQI6.2|DRS1_ASPOR RecName: Full=ATP-dependent RNA helicase drs1
gi|220701431|gb|EED57769.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus flavus
NRRL3357]
gi|391871961|gb|EIT81110.1| ATP-dependent RNA helicase [Aspergillus oryzae 3.042]
Length = 820
Score = 253 bits (646), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 142/358 (39%), Positives = 213/358 (59%), Gaps = 14/358 (3%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ NLS + R + + PTPIQRKT+P+ L G D+V A TGSGKTAAF+VP+L+R
Sbjct: 304 FQEFNLSRPILRGLAAVNFTNPTPIQRKTIPVALLGKDIVGSAVTGSGKTAAFVVPILER 363
Query: 85 L---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L + VP R IL PTR+LA+Q +L YTD+ LVGG S+ Q L
Sbjct: 364 LLFRPRKVPTS--RVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENILK 421
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ PD+IIATPGR + H+ ++ ++E +V DEAD + GFA++L++IL + ++RQ
Sbjct: 422 KRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQ 481
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKL--AFFTL---RQEEKHAALL 256
T+LFSAT+ ++ + + GL P VRL VD+K + + L F L R++++ LL
Sbjct: 482 TMLFSATMTDSVDKLIRVGLNRP--VRLMVDSKKNTSMNLIQEFVRLRPGREDKRLGYLL 539
Query: 257 YMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK 316
++ +E + + ++F K + + F GL+ + +G M Q+ R V FR K
Sbjct: 540 HLCKEVYTG--RVIVFFRQKKEAHRVRIAFGLLGLKAAELHGSMSQEQRIRSVENFREGK 597
Query: 317 TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
FL+ TD+AARG+DI ++ VIN++ P +I++HRVGR ARAGR+G A + D
Sbjct: 598 VSFLLATDLAARGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPD 655
>gi|116491614|ref|YP_811158.1| superfamily II DNA/RNA helicase [Oenococcus oeni PSU-1]
gi|116092339|gb|ABJ57493.1| Superfamily II DNA and RNA helicase [Oenococcus oeni PSU-1]
Length = 521
Score = 253 bits (646), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 154/458 (33%), Positives = 247/458 (53%), Gaps = 22/458 (4%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE LSP + A+K+ GY TPIQ KT+PLI+ G DV+ A+TG+GKTAAF +P+L+
Sbjct: 3 FEEFGLSPELLSAVKKHGYDEATPIQEKTIPLIIQGVDVIGQAQTGTGKTAAFGLPILEE 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
++ PQ ++AL++SPTR+LA+QT + +LG ++ ++ GG + Q L ++P
Sbjct: 63 VDPKNPQ--IQALVISPTRELAMQTEEELNKLGSDKHVKTQVVFGGYDIRRQIHALKEHP 120
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
I++ TPGRL+ HL+ + + V+ +V DEAD + MGF E + I+ ++RQTLL
Sbjct: 121 QILVGTPGRLIDHLNR-HTIDFRGVKTLVIDEADEMLNMGFLEDIETIVHYTPDDRQTLL 179
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFT-LRQEEKHAALLYMIREHI 263
FSAT+P + + + DP V + ++ DL + R+ EK A+ + +
Sbjct: 180 FSATMPDDIKKIGVKFMEDPEEVHI-ASKGLTIDLVDQYLVNTREYEKFDAMTRLF--DV 236
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+ ++F TK V+ L + G + + +GD+DQ AR + F+ + FL+ T
Sbjct: 237 EQPELAIVFGRTKRRVDELTKALQLRGYKAAGIHGDLDQAARMRTLRSFKKGELQFLVAT 296
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHL 383
DVAARG+DI + +V N+D P P+ +VHR+GR RAG G + +FV ++ YL +
Sbjct: 297 DVAARGLDISGVTHVYNYDVPQDPESYVHRIGRTGRAGHHGVSVTFVVRGEIDYLRAIEK 356
Query: 384 FLSKPIRA--APSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDS 441
++K + A PS EE + +++ A A + G+ T ID V D EI +
Sbjct: 357 LINKRMAALKPPSAEEAHI------ARLKNAKAETYAVLGK---TTIDNVEDEATEIANQ 407
Query: 442 SADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPR 479
+ +T+P+ I + K LPR
Sbjct: 408 YDAKLIAAALLHALSKDDERTRPV----DIAQEKPLPR 441
>gi|383455776|ref|YP_005369765.1| putative ATP-dependent RNA helicase RhlE [Corallococcus coralloides
DSM 2259]
gi|380732540|gb|AFE08542.1| putative ATP-dependent RNA helicase RhlE [Corallococcus coralloides
DSM 2259]
Length = 484
Score = 253 bits (646), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 138/360 (38%), Positives = 214/360 (59%), Gaps = 5/360 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L L+ ++ +A+K +GY PTPIQ K +P L+G DV+ +A+TG+GKTAAF +P+LQR
Sbjct: 3 FDELQLTDSLLKAVKAEGYTTPTPIQAKAIPHALAGKDVLGVAQTGTGKTAAFALPILQR 62
Query: 85 LNQHVPQGG---VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L+ P GG VR L+L+PTR+LA Q G+ LR +++ GG Q + L
Sbjct: 63 LSAKAPAGGARPVRCLVLTPTRELASQVSDSFATYGKNLPLRHAVVFGGVGQNPQVQALR 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
Q DI++ATPGRL+ + + ++L+++E V DEAD + MGF + +++ L RQ
Sbjct: 123 QGVDILVATPGRLLDLIDQ-GFVTLRALEVFVLDEADRMLDMGFIHDVRRVIKVLPPVRQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
TL FSATLP + + A+ L++P V + + + + + + +EEK A L +++++
Sbjct: 182 TLFFSATLPPDIMDLARNILKEPVRVEVSPASSTADTVSQQVYFVEREEKRALLTHLLQD 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ + L+F TKH + G+ +G+ Q+AR+ + FRA L+
Sbjct: 242 -AKAIPRALVFTRTKHGANRVAKQLTAAGVRADAIHGNKSQNARERALDEFRAGTLRVLV 300
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TD+AARGIDI L +V N+D P P+ +VHR+GR RAG +G A SF SE+ AYL D+
Sbjct: 301 ATDIAARGIDIDGLSHVFNYDLPNVPEQYVHRIGRTGRAGASGQAVSFCDSEERAYLRDI 360
>gi|349578615|dbj|GAA23780.1| K7_Rrp3p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 501
Score = 253 bits (646), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 147/396 (37%), Positives = 220/396 (55%), Gaps = 10/396 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F LNL P + +A K Y PTPIQ K +P L G D++ +A+TGSGKTAAF +P+L R
Sbjct: 83 FSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNR 142
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L Q A IL+PTR+LA Q + LG +R + +VGG +M Q +L + P
Sbjct: 143 LWHD--QEPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKP 200
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL-SENRQTL 203
I+IATPGRLM HL + SL+ ++++V DEAD L M F L +IL + ++ R T
Sbjct: 201 HIVIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTTY 260
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
LFSAT+ S + + +A L +P + + L + K+ L+Y++ E I
Sbjct: 261 LFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFI 320
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+ +IF TK + E L+ L + +GD++Q+ R + F+A K L+ T
Sbjct: 321 G--KTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGKRSILVAT 378
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHL 383
DVAARG+DIP +D V+N+D P K ++HRVGR ARAGR+G + S V+ D+ +L +
Sbjct: 379 DVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEE 438
Query: 384 FLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETI 419
L K + ++ ++L + + K ANGE +
Sbjct: 439 VLGKKLPKESVDKNIILTLRDSVDK-----ANGEVV 469
>gi|401625423|gb|EJS43432.1| rrp3p [Saccharomyces arboricola H-6]
Length = 500
Score = 253 bits (646), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 148/396 (37%), Positives = 221/396 (55%), Gaps = 10/396 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F LNL P + +A K Y PTPIQ K++P L G D++ +A+TGSGKTAAF +P+L R
Sbjct: 82 FSQLNLVPELIQACKNLNYSKPTPIQSKSIPPALKGHDIIGLAQTGSGKTAAFAIPILNR 141
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L Q A IL+PTR+LA Q + LG +R + +VGG +M Q +L + P
Sbjct: 142 LWHD--QEPYYACILAPTRELAQQIKEAFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKP 199
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL-SENRQTL 203
IIIATPGRLM HL + SL+ ++++V DEAD L M F L +IL + ++ R T
Sbjct: 200 HIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTTY 259
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
LFSAT+ S + + +A L +P + + L + K+ L+Y++ E I
Sbjct: 260 LFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLVYLLNEFI 319
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+ +IF TK + E L+ L + +GD++Q+ R + F+A K L+ T
Sbjct: 320 G--KTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGALDLFKAGKRAILVAT 377
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHL 383
DVAARG+DIP +D V+N+D P K ++HRVGR ARAGR+G + S V+ D+ +L +
Sbjct: 378 DVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEE 437
Query: 384 FLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETI 419
L K + ++ ++L + + K ANGE +
Sbjct: 438 VLGKKLPKENVDKNIILTLRDSVDK-----ANGEVV 468
>gi|355683275|gb|AER97071.1| DEAD box polypeptide 27 [Mustela putorius furo]
Length = 712
Score = 253 bits (646), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 157/451 (34%), Positives = 246/451 (54%), Gaps = 23/451 (5%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ +NLS + +AI G+K PTPIQ+ +P+ L G D+ A A TG+GKTAAF +P+L+R
Sbjct: 188 FQDMNLSRPLLKAITTMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLER 247
Query: 85 LNQHVPQGGV-RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L Q V R LIL PTR+L +Q TK+L ++ + L VGG ++SQ L
Sbjct: 248 LIYKPRQAPVTRVLILVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAA 307
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
PDI+IATPGRL+ HL L S+E ++ DEAD + F EQ+ +I+ S +RQT+
Sbjct: 308 PDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTM 367
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR--QEEKHAALLYMIRE 261
LFSAT+ + + A L++P + ++ +T ++P L+ F +R +E A++ +
Sbjct: 368 LFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLT 427
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+D ++F TK +++L GL+ +G++ Q R + RF+ + L+
Sbjct: 428 RTFTD-HVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILV 486
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TDVAARG+DI + VIN+ P K +VHRVGR ARAGR G + S V E+ L ++
Sbjct: 487 ATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEI 546
Query: 382 HLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDS 441
P++A ++V+L + K+++ +Y V+ L ++ +E+ S
Sbjct: 547 VKAAKAPVKARILPQDVILKFRDKIEKMEK------DVYA-----VLQLEAEE-KELQQS 594
Query: 442 SADLNSLQRTCTNAFRLYSKTKPLPSKESIR 472
A +N+ A RL K K P+ E R
Sbjct: 595 EAQINT-------AKRLLEKGKEAPNHEPER 618
>gi|167630436|ref|YP_001680935.1| dead/deah box helicase [Heliobacterium modesticaldum Ice1]
gi|167593176|gb|ABZ84924.1| dead/deah box helicase [Heliobacterium modesticaldum Ice1]
Length = 540
Score = 253 bits (646), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 141/370 (38%), Positives = 213/370 (57%), Gaps = 10/370 (2%)
Query: 3 LVSSKAELKRREKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGAD 62
+V +K ++K K K K G E LSP V +AI G++ P+PIQ K +P+I+ G D
Sbjct: 1 MVENKNIANDQDKAKDKVKFGEIE---LSPKVAKAIFDMGFEEPSPIQAKAIPVIMQGKD 57
Query: 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDL 122
++ A+TG+GKTA F +PM + LN G V+AL+L PTR+LA+Q + ++GR DL
Sbjct: 58 LIGQAQTGTGKTATFGIPMAETLNPR--DGRVQALVLCPTRELAIQVAQEISKIGRQNDL 115
Query: 123 RISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG 182
+ + GG S++ Q L ++I TPGR++ HLS + + L +V VV DEAD +
Sbjct: 116 KALPVYGGQSIDRQIRALRYGVQVVIGTPGRILDHLSR-KTLRLNNVRMVVLDEADEMLD 174
Query: 183 MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLA 242
MGF E + IL + E RQTLLFSAT+P + + A+ +++P V + D P ++
Sbjct: 175 MGFVEDIEAILKETPEERQTLLFSATMPGPIQQLARQYMKEPEFVTISRDKLTVPLIEQV 234
Query: 243 FFTLRQEEKHAALLYMI-REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMD 301
++ ++ +K AL ++ E I S ++IF TK V+ L G +GD+
Sbjct: 235 YYECKESQKVDALCRILDMEEIGS---SIIFCRTKRGVDELVAALETRGYFAEGLHGDLT 291
Query: 302 QDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAG 361
Q R + +FR K LI TDVAARG+D+ + +VIN+D P P+ +VHR+GR RAG
Sbjct: 292 QAQRDRVMKKFRDGKAELLIATDVAARGLDVENVTHVINYDIPQDPESYVHRIGRTGRAG 351
Query: 362 RTGTAFSFVT 371
R G A + +
Sbjct: 352 RKGIAITLIN 361
>gi|222056385|ref|YP_002538747.1| DEAD/DEAH box helicase [Geobacter daltonii FRC-32]
gi|221565674|gb|ACM21646.1| DEAD/DEAH box helicase domain protein [Geobacter daltonii FRC-32]
Length = 443
Score = 253 bits (646), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 138/366 (37%), Positives = 217/366 (59%), Gaps = 7/366 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ N P + A+K GY PTPIQ + +P ++ G DV+ +A+TG+GKTAAF++P+LQR
Sbjct: 3 FQLFNFHPLISAAVKEAGYVTPTPIQTQAIPPVMDGKDVMGLAQTGTGKTAAFVLPILQR 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L + P+G VRALI++PTR+LA Q + LG+ T L+ + + GG ++ Q ++L
Sbjct: 63 LMEG-PRGRVRALIIAPTRELAEQIHEAITVLGQQTRLKSATVYGGVNINPQIQKLRNGV 121
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
+I++A PGRL+ H+ + + L +E +V DEAD +F MGF + +ILGQL + RQTLL
Sbjct: 122 EIVVACPGRLLDHMGQ-RTIDLSHLEVLVLDEADQMFDMGFLPDIRRILGQLPKKRQTLL 180
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISP-DLKLAFFTLRQEEKHAALLYMIREHI 263
FSAT+P + A L +P V + V + P + A + + Q K LL ++R
Sbjct: 181 FSATMPPDIKRLAGEILHNP--VTVQVGSTAPPVTVNHAIYPVSQHLKTPLLLELLRH-- 236
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+ Q L+F TKH + + + G + G++ Q+ R+ + FR L+ T
Sbjct: 237 TDKQSVLVFTKTKHRAKRVGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGSFQILVAT 296
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHL 383
D+AARGID+ + +V+N+D K + ++HR+GR RA R+G AF+ VT+ED A + +
Sbjct: 297 DIAARGIDVTQISHVVNYDITDKAETYIHRIGRTGRASRSGDAFTLVTAEDTAMVRTIEK 356
Query: 384 FLSKPI 389
L P+
Sbjct: 357 ALGAPL 362
>gi|253699589|ref|YP_003020778.1| DEAD/DEAH box helicase [Geobacter sp. M21]
gi|251774439|gb|ACT17020.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M21]
Length = 453
Score = 253 bits (646), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 137/350 (39%), Positives = 208/350 (59%), Gaps = 5/350 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ NL P V I+ GY PTPIQ + +P ++SG DV+ +A+TG+GKTAAF +PML R
Sbjct: 3 FKQFNLHPKVQAGIEAMGYVTPTPIQLQAIPSVVSGQDVLGLAQTGTGKTAAFGLPMLHR 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L Q +G VR L+L+PTR+LA Q + +G+ T LR + GG ++ +Q ++L +
Sbjct: 63 LVQE-ERGHVRGLVLAPTRELAEQINEALNGMGKQTRLRSITVYGGVNINTQIKKLKEGA 121
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
+I++A PGRL+ H+S+ + L VE +V DEAD +F MGF + KIL L RQ L+
Sbjct: 122 EIVVACPGRLLDHISQ-GTIDLSKVEILVLDEADQMFDMGFLPDVRKILRALPGKRQNLM 180
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P + A LR+P V++ T + + A + + Q K L M++ +
Sbjct: 181 FSATMPDDIRRLAHEILRNPVTVQVS-RTAPAATVSHALYPVGQHLKTPLLFEMLKH--T 237
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
+ LIF TKH + + + G + + G++ Q+ R+ + FR ++ TD
Sbjct: 238 DTESVLIFTKTKHRAKRVGEQLEKAGYKATSLQGNLSQNRRQAALDGFRDGTFQIMVATD 297
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
+AARGID+ L+ +VIN+D P P+ + HR+GR RA +TG AF+ VTSED
Sbjct: 298 IAARGIDVSLISHVINYDIPDTPEAYTHRIGRTGRAAKTGDAFTMVTSED 347
>gi|355621610|ref|ZP_09046211.1| hypothetical protein HMPREF1020_00290 [Clostridium sp. 7_3_54FAA]
gi|354823417|gb|EHF07748.1| hypothetical protein HMPREF1020_00290 [Clostridium sp. 7_3_54FAA]
Length = 477
Score = 253 bits (646), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 144/370 (38%), Positives = 216/370 (58%), Gaps = 9/370 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L LSP + +A++ KGY P+PIQ K +P +L+G DV+ A+TG+GKTAAF +P++Q
Sbjct: 3 FKDLQLSPLLLKALEEKGYVSPSPIQEKAIPHVLAGRDVLGCAQTGTGKTAAFALPIIQN 62
Query: 85 L----NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
L + + +R+LIL+PTR+LALQ + KE G T +R +++ GG S Q EEL
Sbjct: 63 LMKPSEKKYSKRVIRSLILTPTRELALQIAENFKEYGSRTSVRCAVIFGGVSANPQIEEL 122
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
+ DI++ATPGRL + L + L VE V DEAD + MGF + KI+ L +
Sbjct: 123 RRGIDILVATPGRL-NDLVGQGFVDLAHVEIFVLDEADRMLDMGFIHDVRKIISLLPVRK 181
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSAT+P+ + L +P V + + + + + + +E K + L+Y++
Sbjct: 182 QTLLFSATMPAEIQALTDKLLHNPARVEVTPVSSTVDIIDASLYYVDKENKRSLLVYLLN 241
Query: 261 -EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319
E I+S TL+F TKH + + + + + +GD Q AR+ +S F++ +
Sbjct: 242 HEDITS---TLVFTRTKHGADRVAKFLVKNRISAAAIHGDKSQGARQTALSHFKSGEIQV 298
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLL 379
L+ TD+AARGIDI L VIN+D P P+ +VHR+GR RAG G A SF E+ AY+
Sbjct: 299 LVATDIAARGIDIEELSCVINFDLPNIPETYVHRIGRTGRAGLGGRAISFSDIEEKAYVK 358
Query: 380 DLHLFLSKPI 389
D+ K I
Sbjct: 359 DIEKLTGKAI 368
>gi|149371676|ref|ZP_01891092.1| RNA helicase [unidentified eubacterium SCB49]
gi|149355303|gb|EDM43863.1| RNA helicase [unidentified eubacterium SCB49]
Length = 419
Score = 253 bits (646), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 143/360 (39%), Positives = 212/360 (58%), Gaps = 13/360 (3%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPML-- 82
F+ L LS + +AI +KGY P+PIQ K +P IL G DV+A A+TG+GKTA F +PML
Sbjct: 3 FKDLGLSDPLLKAISKKGYTTPSPIQAKAIPKILEGKDVLASAQTGTGKTAGFSLPMLHI 62
Query: 83 ---QRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139
Q +H P V+ALI++PTR+LA Q LK K+ +TD+R +++ GG + Q
Sbjct: 63 ITKQPFQRHRP---VKALIVTPTRELAAQILKEIKDYSAFTDVRSTVIFGGVNANPQIRA 119
Query: 140 LAQNPDIIIATPGRLMH-HLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198
L Q DI++ATPGRL+ H V +M K VE++V DEAD + MGF ++KIL L
Sbjct: 120 LKQGTDILVATPGRLLDLHSQGVFNM--KKVEFLVLDEADRMLDMGFVRDINKILAILPA 177
Query: 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258
RQ LLFSAT + + A++ L +P LV + + +K + + K ++ +
Sbjct: 178 KRQNLLFSATFSKEIKKLAQSFLTNPVLVEAQRENSTAEKVKQTIYKTNKSAKTNLVIKL 237
Query: 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
I E + +Q LIF TKH L + ++ + +G+ Q AR ++ F+
Sbjct: 238 ITE--GNWEQVLIFTRTKHGANRLAEKLGKADVKSAAIHGNKSQGARTKALAGFKDGSIR 295
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
L+ TD+AARG+DIPLL +VIN++ P P+ +VHR+GR ARAG +G A S V+ ++ Y+
Sbjct: 296 VLVATDIAARGLDIPLLPHVINYELPNIPEDYVHRIGRTARAGASGDAISIVSVDEFEYV 355
>gi|374336577|ref|YP_005093264.1| DEAD/DEAH box helicase [Oceanimonas sp. GK1]
gi|372986264|gb|AEY02514.1| DEAD/DEAH box helicase [Oceanimonas sp. GK1]
Length = 458
Score = 253 bits (646), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 142/363 (39%), Positives = 207/363 (57%), Gaps = 15/363 (4%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F SL L+ N+ +AI GY PTPIQ++ +PL+L G D++A A+TG+GKTA F +PMLQR
Sbjct: 3 FASLGLNDNLVQAIHECGYTQPTPIQQQAIPLVLKGGDLLAGAQTGTGKTAGFGLPMLQR 62
Query: 85 L---------NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMES 135
L N P VRAL+L+PTR+LA Q + + ++TDLR ++ GG S+
Sbjct: 63 LSETKARPLANGRAP---VRALVLTPTRELAAQVEENLRAYAKHTDLRTLVMFGGVSINP 119
Query: 136 QFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQ 195
Q + L + DI++ATPGRL+ H+S+ + L VE +V DEAD + MGF + +IL
Sbjct: 120 QMKALGRKVDIVVATPGRLLDHVSQ-RSIDLSRVEMLVLDEADRMLDMGFIRDIRRILAL 178
Query: 196 LSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAAL 255
L + RQ LLFSAT + A+ L P + + + + FF + + K A L
Sbjct: 179 LPKQRQNLLFSATFSDEIKTLAEDLLHQPEHIEVARRNATAETISQRFFEVDKGRKRALL 238
Query: 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRAR 315
Y I H + +Q L+F TKH L ++GL +G+ Q AR +S F++
Sbjct: 239 SYHIGHH--NWRQVLVFTRTKHGANRLAEQLDKDGLPAMAIHGNKSQGARTKALSEFKSG 296
Query: 316 KTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDM 375
L+ TD+AARGIDI L +V+N++ P + +VHR+GR RAG G A S V++E+
Sbjct: 297 GIRVLVATDIAARGIDISELPHVVNYELPNVAEDYVHRIGRTGRAGSNGEALSLVSAEEK 356
Query: 376 AYL 378
L
Sbjct: 357 PLL 359
>gi|307720922|ref|YP_003892062.1| DEAD/DEAH box helicase [Sulfurimonas autotrophica DSM 16294]
gi|306979015|gb|ADN09050.1| DEAD/DEAH box helicase domain protein [Sulfurimonas autotrophica
DSM 16294]
Length = 417
Score = 253 bits (646), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 139/372 (37%), Positives = 214/372 (57%), Gaps = 6/372 (1%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K F SL LS + +AIK +GY PTPIQ+K +P+IL D++A A+TG+GKTA F +P
Sbjct: 3 KETTFNSLGLSAPILKAIKEQGYNTPTPIQQKAIPVILEKKDILAGAQTGTGKTAGFTLP 62
Query: 81 MLQRLNQHVP---QGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF 137
+L+ L++ P + +RALIL+PTR+LA Q + G++ + +++ GG + Q
Sbjct: 63 LLELLSREKPTKQKHKIRALILTPTRELAAQVGESVALYGKHLPFKSTVIFGGVKINPQI 122
Query: 138 EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS 197
L + DI+IATPGRL+ H+S+ + + L+ VEY++ DEAD + MGF + KIL +
Sbjct: 123 SNLRKGTDIVIATPGRLLDHISQ-KTIDLREVEYLILDEADRMLDMGFINDIKKILNIIP 181
Query: 198 ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLY 257
RQTLLFSAT A+ + + L P L+ + S +K A + + + K L +
Sbjct: 182 NQRQTLLFSATYSDAIKKLSNQFLNAPKLIEVARANTSSEIVKQAVYHVDKTRKRELLTH 241
Query: 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKT 317
+I E QQ L+F TKH L+ +G+ +G+ Q+AR ++ F+
Sbjct: 242 LINE--GKWQQVLVFTRTKHGANRLSGQLESDGITAVAIHGNKSQNARTKALADFKKGDV 299
Query: 318 MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAY 377
L+ TD+AARGIDI L +VIN++ P + +VHR+GR RAG G A S V ++ +
Sbjct: 300 RVLVATDIAARGIDIDQLPHVINYELPNVSEDYVHRIGRTGRAGNGGEAISLVCVDEDEF 359
Query: 378 LLDLHLFLSKPI 389
L ++ + K I
Sbjct: 360 LQNIEKLIKKDI 371
>gi|312797197|ref|YP_004030119.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
gi|312168972|emb|CBW75975.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
Length = 555
Score = 253 bits (646), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 137/366 (37%), Positives = 207/366 (56%), Gaps = 6/366 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F SL LS + RA+ GY PTPIQR+ +P +L G D++A A+TG+GKTA F +P+L+R
Sbjct: 9 FNSLGLSEPLVRAVNELGYTTPTPIQRQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILER 68
Query: 85 LNQHVPQGG---VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L+ G VRALIL+PTR+LA Q + +E G+Y LR +++ GG + Q + L
Sbjct: 69 LSHSRATSGKIPVRALILTPTRELAAQVEQSVREYGKYLKLRSTVMFGGVGINPQIDALR 128
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ DI++ATPGRL+ HL + + L S++ +V DEAD + MGF + ++L L RQ
Sbjct: 129 RGVDIVVATPGRLLDHLQQ-RTIDLSSLQILVLDEADRMLDMGFIHDIKRVLKYLPSQRQ 187
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
LLFSAT + A L P L+ + + + + + ++ K L ++I+
Sbjct: 188 NLLFSATFSDEIKALADNLLDSPALIEVARRNTTAETVTQTIYPVDRDRKRELLTHLIKA 247
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
H + Q L+F TKH L ++G+ +G+ Q AR +S F+ L+
Sbjct: 248 H--NWFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQAARTRALSEFKDGTLQVLV 305
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TD+AARGIDI L +V+N+D P P+ +VHR+GR RAG TG A S V ++ L D+
Sbjct: 306 ATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAISLVCIDEHQLLTDI 365
Query: 382 HLFLSK 387
+ +
Sbjct: 366 ERLIKR 371
>gi|58271466|ref|XP_572889.1| ATP-dependent RNA helicase [Cryptococcus neoformans var. neoformans
JEC21]
gi|134115044|ref|XP_773820.1| hypothetical protein CNBH2720 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338819312|sp|P0CR01.1|RRP3_CRYNB RecName: Full=ATP-dependent rRNA helicase RRP3
gi|338819313|sp|P0CR00.1|RRP3_CRYNJ RecName: Full=ATP-dependent rRNA helicase RRP3
gi|50256448|gb|EAL19173.1| hypothetical protein CNBH2720 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229148|gb|AAW45582.1| ATP-dependent RNA helicase, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 484
Score = 253 bits (646), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 149/356 (41%), Positives = 213/356 (59%), Gaps = 8/356 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L +SP + RA G+K P+ IQ + +P L G D++ +A+TGSGKTAAF +P+LQ
Sbjct: 40 FADLGISPELCRACASMGFKKPSDIQAEAIPHALEGKDIIGLAQTGSGKTAAFSLPILQT 99
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L ++ PQ AL+L+PTR+LA Q + LG +R ++LVGG M SQ L++ P
Sbjct: 100 LWEN-PQP-FFALVLAPTRELAYQISQQVTSLGSGIGVRTAVLVGGMDMMSQSIALSKRP 157
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
II+ATPGRLM HL + SLKS++Y+V DEAD L + F + KIL + + R T L
Sbjct: 158 HIIVATPGRLMDHLENTKGFSLKSLKYLVMDEADRLLDLDFGPIIDKILKVIPKERNTYL 217
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKIS--PDLKLAFFTLRQEEKHAALLYMIREH 262
FSAT+ + +A+ +A L P VR++V +K S L + L + K A LLY+ E
Sbjct: 218 FSATMTTKVAKLQRASLNKP--VRVEVSSKYSTVSTLLQHYLLLPLKNKDAYLLYLANEL 275
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
SS +IF T + L+++ R G +G M Q R +++F++ L+
Sbjct: 276 SSSSM--MIFTRTVADSQRLSIILRRLGFPAIPLHGQMTQSLRLASLNKFKSGGRSILVA 333
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
TDVA+RG+DIPL+D VIN+D P K +VHRVGR ARAGR+G + + VT D+ L
Sbjct: 334 TDVASRGLDIPLVDLVINYDMPTNSKDYVHRVGRTARAGRSGKSITLVTQYDVEIL 389
>gi|437999624|ref|YP_007183357.1| ATP-dependent RNA helicase [Candidatus Kinetoplastibacterium
blastocrithidii (ex Strigomonas culicis)]
gi|451813247|ref|YP_007449700.1| ATP-dependent RNA helicase [Candidatus Kinetoplastibacterium
blastocrithidii TCC012E]
gi|429338858|gb|AFZ83280.1| ATP-dependent RNA helicase [Candidatus Kinetoplastibacterium
blastocrithidii (ex Strigomonas culicis)]
gi|451779216|gb|AGF50096.1| ATP-dependent RNA helicase [Candidatus Kinetoplastibacterium
blastocrithidii TCC012E]
Length = 468
Score = 253 bits (646), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 133/354 (37%), Positives = 205/354 (57%), Gaps = 5/354 (1%)
Query: 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQ 83
FE + ++ N+ A+K G+ PTP+Q T+P LSG D++ A+TGSGKTAAF++P+LQ
Sbjct: 2 SFEKIGINSNILSALKTSGFVSPTPVQEATIPQALSGKDLIVSAQTGSGKTAAFMLPILQ 61
Query: 84 RLNQHVPQGGV--RALILSPTRDLALQTLKFTKELG-RYTDLRISLLVGGDSMESQFEEL 140
L+Q + + L+L+PTR+LALQ K T G LRI+ +VGG +Q L
Sbjct: 62 MLSQKPKSNNINPQVLVLTPTRELALQITKATASYGINMPWLRIATIVGGMPYRNQIRAL 121
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
++ DI++ATPGRL+ + +SL S++ +V DEAD + MGF E + I+ +R
Sbjct: 122 SKRVDILVATPGRLIDQMKS-NKVSLTSIQTLVLDEADRMLDMGFIEDIETIVKNTPRDR 180
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QT+LFSAT+ ++A AK + +P + L + ++ F E LL +
Sbjct: 181 QTMLFSATIDESIARLAKKMMNNPQHIALTSSKQKHDNITQKLFYADNNEHKVKLLNHVL 240
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
S DQ +IF STK + L + G + +GDM+Q R +S+ + ++ L
Sbjct: 241 NESSLDQ-AIIFTSTKKGADKLAECLSDNGFSVAALHGDMNQRQRTRTISQLQKKQIRVL 299
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
+ TD+AARGIDI + + +N+D P + + +VHR+GR RAGR G+A S VT+E+
Sbjct: 300 VATDIAARGIDINGISHAVNFDLPMQAEDYVHRIGRTGRAGRNGSALSLVTNEE 353
>gi|423722013|ref|ZP_17696189.1| hypothetical protein HMPREF1078_00252 [Parabacteroides merdae
CL09T00C40]
gi|409242715|gb|EKN35475.1| hypothetical protein HMPREF1078_00252 [Parabacteroides merdae
CL09T00C40]
Length = 426
Score = 253 bits (646), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 133/371 (35%), Positives = 221/371 (59%), Gaps = 6/371 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE L L + +A+K++ Y PTPIQ + +P++L G+D++ A+TG+GKTAAF +P++Q+
Sbjct: 10 FEQLELIEPIRKALKKEKYTTPTPIQAEAIPVVLDGSDLLGCAQTGTGKTAAFSIPIIQK 69
Query: 85 LNQHVPQG---GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
+ + + +G G++ALIL+PTR+LA+Q + GRYT ++ +++ GG + Q + L
Sbjct: 70 IEERISRGRKPGIKALILTPTRELAIQIGESFTAYGRYTHVKHTVIFGGVGQKPQTDALE 129
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ D++IATPGRL+ +++ + L ++EY V DEAD + MGF + +IL L RQ
Sbjct: 130 RGVDVLIATPGRLLDLINQ-GFIRLDTLEYFVLDEADRMLDMGFIHDIKRILPLLPRKRQ 188
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
+L FSAT+P + A L +P V + + + + + + + EK L ++ +
Sbjct: 189 SLFFSATMPPEIERLAGTILHEPEKVEVTPVSSTVDTIDQSVYFVEKVEKINLLKNLLED 248
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
S + L+F TKH + + + + G+ +G+ Q AR+ +S F+ LI
Sbjct: 249 R--SLESVLVFTRTKHGADKVARVLNKSGIGAEAIHGNKGQSARQRALSSFKDHTLRVLI 306
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TD+A+RGID+ L +VIN+D P P+ +VHR+GR RAGR+G AFSF E++ YL D+
Sbjct: 307 ATDIASRGIDVDHLSHVINYDLPNVPETYVHRIGRTGRAGRSGIAFSFCDVEEVPYLKDI 366
Query: 382 HLFLSKPIRAA 392
+ K + A
Sbjct: 367 QKLIGKEVPVA 377
>gi|380696525|ref|ZP_09861384.1| ATP-dependent RNA helicase [Bacteroides faecis MAJ27]
Length = 374
Score = 253 bits (646), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 130/371 (35%), Positives = 224/371 (60%), Gaps = 6/371 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ LN++ + +A++ KGY VPTPIQ K +P+ L D++ A+TG+GKTA+F +P++Q
Sbjct: 3 FKELNITEPILKAVEEKGYTVPTPIQEKAIPVALVKRDILGCAQTGTGKTASFAIPIIQH 62
Query: 85 LNQHVPQG---GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L+ + +G G++ALIL+PTR+LALQ + + +YT +R ++ GG + Q + L
Sbjct: 63 LHLNKGEGKRLGIKALILTPTRELALQISECIDDYSKYTRIRHGVIFGGVNQRPQVDMLH 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ DI++ATPGRL+ +++ + L +++Y V DEAD + MGF + +IL +L + +Q
Sbjct: 123 KGIDILVATPGRLLDLMNQ-GHIRLDNIQYFVLDEADRMLDMGFIHDIKRILPKLPKEKQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
TL FSAT+P + + L++P + + + +K + + ++EK L+ ++++
Sbjct: 182 TLFFSATMPDTIIALTNSLLKNPVKIYVTPKSSTVDSIKQLVYFVEKKEKSQLLISILQK 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
S D+ LIF TKH+ + + + + G+ +G+ Q AR+ + F++ KT ++
Sbjct: 242 --SEDRSVLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRVMV 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TD+A+RGIDI L VIN+D P P+ +VHR+GR RAG GTA +F + E+ + D+
Sbjct: 300 ATDIASRGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNEGTALTFCSQEERKLINDI 359
Query: 382 HLFLSKPIRAA 392
K + A
Sbjct: 360 QKLTGKKLNRA 370
>gi|119494918|ref|XP_001264258.1| ATP-dependent RNA helicase (Drs1), putative [Neosartorya fischeri
NRRL 181]
gi|142982588|sp|A1D1R8.1|DRS1_NEOFI RecName: Full=ATP-dependent RNA helicase drs1
gi|119412420|gb|EAW22361.1| ATP-dependent RNA helicase (Drs1), putative [Neosartorya fischeri
NRRL 181]
Length = 819
Score = 253 bits (646), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 140/358 (39%), Positives = 213/358 (59%), Gaps = 14/358 (3%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ NLS + R + + PTPIQ+KT+P+ L G D+V A TGSGKTAAF+VP+L+R
Sbjct: 301 FQDFNLSRPILRGLASVNFTTPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILER 360
Query: 85 L---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L + VP R IL PTR+LA+Q +L +TD+ LVGG S+ Q L
Sbjct: 361 LLFRPRKVPTS--RVAILMPTRELAVQCYNVATKLATHTDITFCQLVGGFSLREQENILK 418
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ PD+IIATPGR + H+ ++ ++E +V DEAD + GFA++L++IL + ++RQ
Sbjct: 419 KRPDVIIATPGRFIDHMRNSPSFTVDTLEILVLDEADRMLEDGFADELNEILTTIPQSRQ 478
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLA--FFTL---RQEEKHAALL 256
T+LFSAT+ ++ + + GL P VRL VD+K + + L F L R++++ LL
Sbjct: 479 TMLFSATMTDSVDKLIRVGLNRP--VRLMVDSKKNTSMNLTQEFVRLRPGREDKRLGYLL 536
Query: 257 YMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK 316
Y+ E + + ++F K + ++F GL+ + +G M Q+ R V FR K
Sbjct: 537 YLCNEIYTG--RVIVFFRQKREAHRVRIVFGLLGLKAAELHGSMSQEQRIKSVENFREGK 594
Query: 317 TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
FL+ TD+A+RG+DI ++ VIN++ P +I++HRVGR ARAGR+G A + D
Sbjct: 595 VAFLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPD 652
>gi|83766036|dbj|BAE56179.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 856
Score = 253 bits (646), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 142/358 (39%), Positives = 213/358 (59%), Gaps = 14/358 (3%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ NLS + R + + PTPIQRKT+P+ L G D+V A TGSGKTAAF+VP+L+R
Sbjct: 340 FQEFNLSRPILRGLAAVNFTNPTPIQRKTIPVALLGKDIVGSAVTGSGKTAAFVVPILER 399
Query: 85 L---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L + VP R IL PTR+LA+Q +L YTD+ LVGG S+ Q L
Sbjct: 400 LLFRPRKVPTS--RVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENILK 457
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ PD+IIATPGR + H+ ++ ++E +V DEAD + GFA++L++IL + ++RQ
Sbjct: 458 KRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQ 517
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKL--AFFTL---RQEEKHAALL 256
T+LFSAT+ ++ + + GL P VRL VD+K + + L F L R++++ LL
Sbjct: 518 TMLFSATMTDSVDKLIRVGLNRP--VRLMVDSKKNTSMNLIQEFVRLRPGREDKRLGYLL 575
Query: 257 YMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK 316
++ +E + + ++F K + + F GL+ + +G M Q+ R V FR K
Sbjct: 576 HLCKEVYTG--RVIVFFRQKKEAHRVRIAFGLLGLKAAELHGSMSQEQRIRSVENFREGK 633
Query: 317 TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
FL+ TD+AARG+DI ++ VIN++ P +I++HRVGR ARAGR+G A + D
Sbjct: 634 VSFLLATDLAARGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPD 691
>gi|404406153|ref|ZP_10997737.1| DNA/RNA helicase [Alistipes sp. JC136]
Length = 541
Score = 253 bits (646), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 138/361 (38%), Positives = 207/361 (57%), Gaps = 6/361 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L LS + RAI KGY PTPIQ++ +P +L G D+ A+TG+GKTAAF +P+LQ
Sbjct: 3 FQDLGLSEPLLRAIGEKGYTDPTPIQQQAIPPVLEGRDLQGCAQTGTGKTAAFTLPILQL 62
Query: 85 LNQHVPQGG---VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L G +RAL+++PTR+LA+Q + ++ RY +R ++ GG + Q + L
Sbjct: 63 LAAEPAARGRREIRALVITPTRELAIQIDECCRDYARYLSIRHCVIFGGVNQRPQVDALQ 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ D+++ATPGRL+ + + +SL + + V DEAD + MGF + +IL L RQ
Sbjct: 123 RGVDLLVATPGRLLDLIGQGY-ISLDKIRFFVLDEADRMLDMGFIHDIRRILPLLPAQRQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
TL FSAT+P +A+ A L DP LV + + + + EK L+ ++
Sbjct: 182 TLFFSATMPPDIAQLAAKILHDPVLVTVTPPASVVETISQRVHFAEKAEKSQLLIDLLEG 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
S QQ L+F TKH + L + G++ S +G+ Q+AR ++ F+ LI
Sbjct: 242 --SDAQQVLVFTRTKHGADKLAKILNRAGIQSSAIHGNKSQNARVKAMNDFKGGFCRVLI 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TD+AARGIDI L VIN+D P P+ +VHR+GR RAG GTA+SF + ++ YL D+
Sbjct: 300 ATDIAARGIDIDQLPLVINYDLPEVPETYVHRIGRTGRAGYEGTAWSFCSEDEFDYLKDI 359
Query: 382 H 382
Sbjct: 360 Q 360
>gi|395215483|ref|ZP_10400949.1| DEAD/DEAH box helicase [Pontibacter sp. BAB1700]
gi|394455827|gb|EJF10233.1| DEAD/DEAH box helicase [Pontibacter sp. BAB1700]
Length = 476
Score = 253 bits (646), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 133/368 (36%), Positives = 219/368 (59%), Gaps = 5/368 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F LNL + +A++ +GY PTPIQ + +P +L+G DV+ A+TG+GKTAAF +P+LQ
Sbjct: 3 FSELNLIDPILKALQAEGYTQPTPIQEQAIPHLLAGTDVLGCAQTGTGKTAAFAIPVLQM 62
Query: 85 LNQHVPQGG--VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
L+ + ++ LIL+PTR+LA+Q + G+ T +R +++ GG S +Q + L +
Sbjct: 63 LHNQKNRASNTIKTLILTPTRELAIQINESFAAYGKNTGVRHTVIFGGVSQHAQVQTLKR 122
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
D++IATPGRL+ + + +SLK VE+ V DEAD + MGF + +I+ L + RQ+
Sbjct: 123 GVDVLIATPGRLLDLIGQ-GFISLKHVEFFVLDEADRMLDMGFIHDVKRIIPMLPKQRQS 181
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
L FSAT+P + + A L +P V + + + + A + + + +K L +++ E
Sbjct: 182 LFFSATMPPVIQDLADTILINPVKVEVTPVSSTAEKVGQAVYFVEKNDKRELLRHLLSE- 240
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
S + L+F TKH + + + ++ +G+ Q+AR+ +S F+A T L+
Sbjct: 241 -SEIDRVLVFTRTKHGADRVAKDLNKANIQAEAIHGNKSQNARQRALSNFKAGSTRVLVA 299
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
TD+AARGID+ L +VIN++ P +P+ +VHR+GR RAG G A SF E+ YL D+
Sbjct: 300 TDIAARGIDVEELSHVINYELPNEPETYVHRIGRTGRAGNAGIALSFCDEEERYYLRDIQ 359
Query: 383 LFLSKPIR 390
++K I+
Sbjct: 360 KLINKQIK 367
>gi|410079330|ref|XP_003957246.1| hypothetical protein KAFR_0D04630 [Kazachstania africana CBS 2517]
gi|372463831|emb|CCF58111.1| hypothetical protein KAFR_0D04630 [Kazachstania africana CBS 2517]
Length = 487
Score = 253 bits (645), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 150/397 (37%), Positives = 220/397 (55%), Gaps = 12/397 (3%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F LNL P + +A K Y+ PTPIQ K++P L+G D++ +A+TGSGKTAAF +P+L
Sbjct: 69 FTELNLVPELIQACKNLNYEKPTPIQSKSIPPALNGKDIIGLAQTGSGKTAAFAIPILNS 128
Query: 85 L-NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L + +P A ILSPTR+LA Q + LG +R +VGG +M Q +L +
Sbjct: 129 LWHDQLP---YYACILSPTRELAQQIKETFDSLGSLMGVRTVCIVGGMNMMDQARDLMRK 185
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL-SENRQT 202
P IIIATPGRLM HL SL+ + Y+V DEAD L M F L +IL L +E R T
Sbjct: 186 PHIIIATPGRLMDHLENTRGFSLRKLRYLVMDEADRLLDMEFGPVLDRILKILPTEGRTT 245
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
LFSAT+ S + + +A L +P + + L + K+ L+Y++ E
Sbjct: 246 YLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEF 305
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
+ +IF TK + E + L + +GD++Q+ R + F+A K L+
Sbjct: 306 --HGKTFIIFTRTKANAERIAGLANLLEFNATALHGDLNQNQRTGALDLFKAGKRSILVA 363
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
TDVAARG+DIP +D VIN+D P K ++HRVGR ARAGR+G + S V+ D+ +L +
Sbjct: 364 TDVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIE 423
Query: 383 LFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETI 419
L K + +++++L + + K ANGE +
Sbjct: 424 EVLGKKLPKESVDKDIILSLRDSVDK-----ANGEVV 455
>gi|326316545|ref|YP_004234217.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax avenae
subsp. avenae ATCC 19860]
gi|323373381|gb|ADX45650.1| DEAD/DEAH box helicase domain protein [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 605
Score = 253 bits (645), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 131/368 (35%), Positives = 217/368 (58%), Gaps = 6/368 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ LNL+P + +A+ +GY+ PTPIQ + +P +L+G D++A A+TG+GKTAAF +PML R
Sbjct: 3 FDELNLAPAILKAVHEQGYETPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPMLHR 62
Query: 85 LNQHV---PQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L Q P GG+RAL+L+PTR+LA Q + + ++ D++ +++ GG M Q + +
Sbjct: 63 LTQGGTARPAGGIRALVLTPTRELAAQVEENLRAYAKHLDVKSTVIFGGVGMNPQIDRIK 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ DI++ATPGRL+ L + + L VE +V DEAD + MGF + K+L + ++Q
Sbjct: 123 RGVDILVATPGRLLD-LQQQGFLDLSKVEILVLDEADRMLDMGFIHDVKKVLALVPRDKQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
+LLFSAT + E A L++P +++ + + + +K LL++I+E
Sbjct: 182 SLLFSATFSDEIRELANTLLKNPQSIQVTPRNTTVQRITQVIHPVGRGKKKQVLLHIIQE 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
H S Q L+F TK + + G+ +G+ Q AR ++ F++ L+
Sbjct: 242 HNWS--QVLVFTRTKFGANNVAEFLTKNGVNAMALHGNKSQSARTQALAGFKSGDIRALV 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TD+AARGIDI L +V+N++ P P+ +VHR+GR RAG +G A S V ++ +++++
Sbjct: 300 ATDIAARGIDIDELPHVVNYEIPNVPEDYVHRIGRTGRAGASGEAVSLVCMDEEGFMMEI 359
Query: 382 HLFLSKPI 389
F + I
Sbjct: 360 ERFTKQEI 367
>gi|383935744|ref|ZP_09989177.1| ATP-dependent RNA helicase RhlE [Rheinheimera nanhaiensis E407-8]
gi|383703063|dbj|GAB59268.1| ATP-dependent RNA helicase RhlE [Rheinheimera nanhaiensis E407-8]
Length = 444
Score = 253 bits (645), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 133/370 (35%), Positives = 223/370 (60%), Gaps = 6/370 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+SL L+ + R ++ +GY PTP+QR+++P+IL+G DV+A A+TG+GKTAAF +P+LQ+
Sbjct: 31 FQSLALAAPILRVLQEQGYDAPTPVQRQSIPVILAGKDVLAGAQTGTGKTAAFTLPLLQQ 90
Query: 85 L---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
+ + V VR L+L+PTR+LA Q ++ +Y + R ++ GG S+ Q+++
Sbjct: 91 MLNAPKVVAPNQVRVLVLTPTRELAQQVYDNVRKYSQYLECRSAVFYGGVSIRPQYDDAE 150
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
Q DI++ATPGRL+ HL + + + L ++E +V DEAD + MGF + +I+ +L RQ
Sbjct: 151 QGLDILVATPGRLIDHLHQ-KTVDLSALEVLVLDEADRMLDMGFIVDIKRIMAKLPAKRQ 209
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
TLLFSAT + + + A L P L+ + + ++ + + + K L ++I
Sbjct: 210 TLLFSATYSNEIKQLADELLNSPQLIEVAATNATAERVEQQAYLVDRHRKRELLSHVIGR 269
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ + Q L+FV TKH + L ++GL+ + +GD Q AR ++ F+A L+
Sbjct: 270 N--NWPQVLVFVRTKHGADRLAKQLAKDGLKSAAIHGDKSQGARTKALADFKAGSVRILV 327
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TD+AARG+DI L V+N+D P P+ +VHR+GR RAG +G A + +T +++ L ++
Sbjct: 328 ATDIAARGLDINELPYVVNYDLPQVPEDYVHRIGRTGRAGNSGVALTLITPDEIKALQEI 387
Query: 382 HLFLSKPIRA 391
+ + I A
Sbjct: 388 ERLIQQVITA 397
>gi|317129136|ref|YP_004095418.1| DEAD/DEAH box helicase [Bacillus cellulosilyticus DSM 2522]
gi|315474084|gb|ADU30687.1| DEAD/DEAH box helicase domain protein [Bacillus cellulosilyticus
DSM 2522]
Length = 528
Score = 253 bits (645), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 139/381 (36%), Positives = 224/381 (58%), Gaps = 16/381 (4%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE +S ++ +AIK G++ P+PIQ K +P IL G DV+ A+TG+GKTAAF +P+L++
Sbjct: 4 FEDFQISNDIKKAIKDMGFEAPSPIQEKVIPEILKGHDVIGQAQTGTGKTAAFGIPLLEK 63
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
+ V++LIL+PTR+LA+Q ++L ++ +I + GG S+ Q + L +
Sbjct: 64 VTS---DRQVQSLILTPTRELAIQVAGELQKLSKFKRSQILPIYGGQSIGHQIKALKRGV 120
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
+++ TPGR++ HL+ + + L+SV ++ DEAD + MGF E + KIL Q++ NRQT+L
Sbjct: 121 QVVVGTPGRVLDHLNR-KTLQLRSVHTLILDEADEMLDMGFIEDIEKILQQVNTNRQTML 179
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P + + + + +P V + +P + +F + ++ K +L +I
Sbjct: 180 FSATMPPPIRKLSNKYMNNPKQVTISKGEVTAPSINQVYFKVLEKNKLDSLCRVI----- 234
Query: 265 SDQQTL----IFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
D +T+ IF TK V L + G +GD+ Q R I + +FR FL
Sbjct: 235 -DSETIDLGIIFCRTKKGVAELTEALQARGYMADGLHGDLTQSQRDIVMKKFRDSSIEFL 293
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL-- 378
I TDVAARGID+ + +VIN+D P P+ +VHR+GR RAGR G A + VT +M +L
Sbjct: 294 IATDVAARGIDVENVSHVINYDIPQDPESYVHRIGRTGRAGREGVAVTLVTPREMKHLRS 353
Query: 379 LDLHLFLSKPIRAAPSEEEVL 399
++ + ++ P + PS EEV+
Sbjct: 354 IEAEIKMTIPSQRIPSVEEVV 374
>gi|122692565|ref|NP_001073740.1| probable ATP-dependent RNA helicase DDX27 [Bos taurus]
gi|142980808|sp|A1A4H6.1|DDX27_BOVIN RecName: Full=Probable ATP-dependent RNA helicase DDX27; AltName:
Full=DEAD box protein 27
gi|119223998|gb|AAI26498.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Bos taurus]
gi|296481114|tpg|DAA23229.1| TPA: probable ATP-dependent RNA helicase DDX27 [Bos taurus]
Length = 765
Score = 253 bits (645), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 156/451 (34%), Positives = 246/451 (54%), Gaps = 23/451 (5%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ +NLS + +AI G+K PTPIQ+ +P+ L G D+ A A TG+GKTAAF +P+L+R
Sbjct: 189 FQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLER 248
Query: 85 LNQHVPQGGV-RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L Q V R L+L PTR+L +Q TK+L ++ + L VGG ++SQ L
Sbjct: 249 LIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAA 308
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
PDI+IATPGRL+ HL L S+E ++ DEAD + F EQ+ +I+ S +RQT+
Sbjct: 309 PDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTM 368
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR--QEEKHAALLYMIRE 261
LFSAT+ + + A L++P + ++ +T ++P L+ F +R +E A++ +
Sbjct: 369 LFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLM 428
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+D ++F TK +++L GL+ +G++ Q R + RF+ + L+
Sbjct: 429 RTFTD-HVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILV 487
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TDVAARG+DI + VIN+ P K +VHRVGR ARAGR G + S V E+ L ++
Sbjct: 488 ATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEI 547
Query: 382 HLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDS 441
P++A ++V+L + K+++ +Y V+ L ++ +E+ S
Sbjct: 548 VKAAKAPVKARILPQDVILKFRDKIEKMEK------DVYA-----VLQLEAEE-KEMQKS 595
Query: 442 SADLNSLQRTCTNAFRLYSKTKPLPSKESIR 472
A +N+ Q RL K K P+ E R
Sbjct: 596 EAQINTAQ-------RLLEKGKEAPNPEPER 619
>gi|423345822|ref|ZP_17323511.1| hypothetical protein HMPREF1060_01183 [Parabacteroides merdae
CL03T12C32]
gi|409221557|gb|EKN14506.1| hypothetical protein HMPREF1060_01183 [Parabacteroides merdae
CL03T12C32]
Length = 426
Score = 253 bits (645), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 133/371 (35%), Positives = 221/371 (59%), Gaps = 6/371 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE L L + +A+K++ Y PTPIQ + +P++L G+D++ A+TG+GKTAAF +P++Q+
Sbjct: 10 FEQLELIEPIRKALKKEKYTTPTPIQAEAIPVVLDGSDLLGCAQTGTGKTAAFSIPIIQK 69
Query: 85 LNQHVPQG---GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
+ + + +G G++ALIL+PTR+LA+Q + GRYT ++ +++ GG + Q + L
Sbjct: 70 IEERISRGRKPGIKALILTPTRELAIQIGESFTAYGRYTHVKHTVIFGGVGQKPQTDALE 129
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ D++IATPGRL+ +++ + L ++EY V DEAD + MGF + +IL L RQ
Sbjct: 130 RGVDVLIATPGRLLDLINQ-GFIRLDTLEYFVLDEADRMLDMGFIHDIKRILPLLPRKRQ 188
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
+L FSAT+P + A L +P V + + + + + + + EK L ++ +
Sbjct: 189 SLFFSATMPPEIERLAGTILHEPEKVEVTPVSSTVDTIDQSVYFVEKVEKINLLKNLLED 248
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
S + L+F TKH + + + + G+ +G+ Q AR+ +S F+ LI
Sbjct: 249 R--SLESVLVFTRTKHGADKVARVLNKSGIGAEAIHGNKGQSARQRALSSFKDHTLRVLI 306
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TD+A+RGID+ L +VIN+D P P+ +VHR+GR RAGR+G AFSF E++ YL D+
Sbjct: 307 ATDIASRGIDVDHLSHVINYDLPNVPETYVHRIGRTGRAGRSGIAFSFCDVEEVPYLKDI 366
Query: 382 HLFLSKPIRAA 392
+ K + A
Sbjct: 367 QKLIGKEVPVA 377
>gi|423207165|ref|ZP_17193721.1| hypothetical protein HMPREF1168_03356 [Aeromonas veronii AMC34]
gi|404621114|gb|EKB18006.1| hypothetical protein HMPREF1168_03356 [Aeromonas veronii AMC34]
Length = 431
Score = 253 bits (645), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 138/369 (37%), Positives = 214/369 (57%), Gaps = 6/369 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FES + +P + RA+ GY+ TP+Q++ +P I G DV+A A+TG+GKTAAF +P+LQR
Sbjct: 3 FESFDFAPEILRAVSDCGYQEMTPVQQQAIPAIRRGRDVLASAQTGTGKTAAFALPILQR 62
Query: 85 LNQH---VPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L + V R LIL+PTR+LA Q + +Y D+ +VGG + Q ++L
Sbjct: 63 LVDNPAPVQPSNARVLILTPTRELAAQVASNINDFAKYLDITTITIVGGGKQDVQAKKLK 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
II+ATPGRL+ HL+ ++SL VE +V DEAD + MGF+ + KIL +++ RQ
Sbjct: 123 AGAHIIVATPGRLLEHLTAC-NLSLSGVECLVLDEADRILDMGFSADVQKILQAVNKTRQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
LLFSAT A+ + A L P +V ++ + + + + Q+ K L +I +
Sbjct: 182 NLLFSATFSDAVKKLANLMLDRPQIVSVNKQNSTADTVSHTVYPVEQKRKRELLSELIGK 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ QQ L+F ST+ + L +G++ +V +G+ Q R+ + F K L+
Sbjct: 242 Q--NWQQVLVFASTRESCDVLVEELNLDGIKSAVVHGEKAQGNRRRALREFMEGKVRVLV 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
T+VAARG+DIP L+ V+N+D P + +VHR+GR RAG+ G A SFV+ E+ LL++
Sbjct: 300 ATEVAARGLDIPDLEYVVNYDLPFLAEDYVHRIGRTGRAGKRGMAISFVSREEERTLLEI 359
Query: 382 HLFLSKPIR 390
+ + IR
Sbjct: 360 EALIGQKIR 368
>gi|334366430|ref|ZP_08515362.1| putative ATP-dependent RNA helicase RhlE [Alistipes sp. HGB5]
gi|313157396|gb|EFR56819.1| putative ATP-dependent RNA helicase RhlE [Alistipes sp. HGB5]
Length = 473
Score = 253 bits (645), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 137/361 (37%), Positives = 209/361 (57%), Gaps = 6/361 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ LNL + A+ KGY PTPIQ + +P L G D++ A+TG+GKTAAF +P+LQ
Sbjct: 3 FKELNLIEPIMHAVAEKGYVTPTPIQEQAIPPALEGRDLMGCAQTGTGKTAAFTLPILQL 62
Query: 85 LNQHVPQGG---VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L+ G ++AL+L+PTR+LA+Q + ++ RYTDLR ++ GG + Q + L
Sbjct: 63 LSARPRTKGRRPIKALVLTPTRELAIQIDECCRDYARYTDLRHCVIFGGVNQRPQVDALQ 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ D+++ATPGRL+ + + +SL + + V DEAD + MGF + +IL L + RQ
Sbjct: 123 RGVDLLVATPGRLLDLIGQGY-VSLSDIRFFVLDEADRMLDMGFIHDIKRILPLLPKERQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
TL FSAT+PS + A + L DP V + + + + + EK L+ ++RE
Sbjct: 182 TLFFSATMPSDIVTLANSMLHDPVHVTVTPPASVVETISQSVMFAEKAEKKDLLISLLRE 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
S+ L+F TKH + + + + G+E +GD Q AR+ ++ FRA + LI
Sbjct: 242 R--SEGSVLVFSRTKHGADRIARILTKAGIEGRAIHGDKSQGARERAMNDFRAGRCRVLI 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TD+AARGIDI L VIN+D P + +VHR+GR RAG GTA +F + ++ L D+
Sbjct: 300 ATDIAARGIDISELPLVINYDLPEVAETYVHRIGRTGRAGHDGTAIAFCSEDERPLLKDI 359
Query: 382 H 382
Sbjct: 360 Q 360
>gi|156097723|ref|XP_001614894.1| hypothetical protein [Plasmodium vivax Sal-1]
gi|148803768|gb|EDL45167.1| hypothetical protein, conserved [Plasmodium vivax]
Length = 1181
Score = 253 bits (645), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 138/376 (36%), Positives = 226/376 (60%), Gaps = 14/376 (3%)
Query: 25 FESLNLSPNVFRAIKRK-GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQ 83
F L LS N+ R+I Y PT IQ+ +P I+SG DV+ +++TG+GK+ ++ ++
Sbjct: 168 FHHLGLSENMCRSISSNLKYNRPTDIQKLCIPKIVSGRDVICISKTGTGKSLVYVSTLVD 227
Query: 84 RLNQHVPQGGVRALILSPTRDLALQTLKFTKELGR-YTDLRISLLVGGDSMESQFEELAQ 142
L +H GVR L+L PT++LA+Q K +K++ + + +L+I++++GG ++ QF+ L +
Sbjct: 228 LLAEHSQFFGVRGLVLVPTKELAIQIFKLSKKICKNFFNLKINVIIGGINLNKQFDMLKE 287
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE-NRQ 201
N DI+I TPGRL L E ++SL+ V+ ++ DEAD L + + ++ I L ++Q
Sbjct: 288 NLDILICTPGRLSFILKET-NLSLEKVQMLIIDEADRLLELNYFNDMNNIYKSLHRTDKQ 346
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI-- 259
TLL SATLP+ + + K L +P ++ L D IS +KL F R EK+ L+ +I
Sbjct: 347 TLLISATLPTDVQNYFKLKLNNPEVLSLSSDNSISEKMKLHFLFTRSYEKYGVLIKLIFL 406
Query: 260 --REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF-RARK 316
++++ +TLIF TK+H+ F + + + ++ YG+ D R + +F ++
Sbjct: 407 FKKKNLG---KTLIFFCTKYHILFFSKILSSLKIAHAILYGNSDTSFRFDQIKKFTNTQE 463
Query: 317 TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAAR--AGRTGTAFSFVTSED 374
FL+VTDVAARGI+I + NVIN+ P PK+F+HRVGRA R A G A S VT +D
Sbjct: 464 IQFLLVTDVAARGINITSVQNVINYSLPFSPKLFIHRVGRACRDDAMPAGYAVSLVTFQD 523
Query: 375 MAYLLDLHLFLSKPIR 390
+ Y ++ F+ K ++
Sbjct: 524 VLYAYEICFFIGKRLK 539
>gi|345328224|ref|XP_001507068.2| PREDICTED: probable ATP-dependent RNA helicase DDX27
[Ornithorhynchus anatinus]
Length = 716
Score = 253 bits (645), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 142/403 (35%), Positives = 229/403 (56%), Gaps = 4/403 (0%)
Query: 14 EKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGK 73
E K +S F+ +NLS + +AI G+K PTPIQ+ +P+ + G D+ A A TG+GK
Sbjct: 129 EDASKYDESLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGMLGKDICACAATGTGK 188
Query: 74 TAAFLVPMLQRLNQHVPQGGV-RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
TAAF +P+L+RL Q V R L+L PTR+L +Q TK+L +++++ L VGG
Sbjct: 189 TAAFALPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFSNVTTCLAVGGLD 248
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
+++Q L PDI+IATPGRL+ HL L S+E ++ DEAD + F EQ+ +I
Sbjct: 249 VKTQEAALRAGPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEI 308
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR--QEE 250
+ S +RQT+LFSAT+ + + A L++P + ++ +T ++P L+ F +R +E
Sbjct: 309 IKMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFVRIRPNREG 368
Query: 251 KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVS 310
A++ + +D ++F TK +++L GL+ +G++ Q R +
Sbjct: 369 DREAVVSALLTRTFTD-HVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALR 427
Query: 311 RFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFV 370
RF+ + L+ TDVAARG+DI + VIN+ P K +VHRVGR ARAGR G + S V
Sbjct: 428 RFKDEQIDVLVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLV 487
Query: 371 TSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAI 413
E+ L ++ P++A ++V+L + K+++ +
Sbjct: 488 GEEERKMLKEIVKTAKAPVKARILPQDVILKFRDKIEKLEKDV 530
>gi|366994708|ref|XP_003677118.1| hypothetical protein NCAS_0F02790 [Naumovozyma castellii CBS 4309]
gi|342302986|emb|CCC70763.1| hypothetical protein NCAS_0F02790 [Naumovozyma castellii CBS 4309]
Length = 502
Score = 253 bits (645), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 149/396 (37%), Positives = 220/396 (55%), Gaps = 10/396 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L+L P + +A K Y PTPIQ +++P L G D++ +A+TGSGKTAAF +P+L
Sbjct: 84 FSELDLVPELLQACKNLNYTKPTPIQSRSIPPALKGNDIIGLAQTGSGKTAAFAIPILNS 143
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L Q A IL+PTR+LA Q + LG +R + +VGG +M Q +L + P
Sbjct: 144 LWHD--QQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQARDLMRKP 201
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL-SENRQTL 203
IIIATPGRLM HL + SL+ ++Y+V DEAD L M F L +IL L ++ R T
Sbjct: 202 HIIIATPGRLMDHLENTKGFSLRKLKYLVMDEADRLLDMEFGPVLDRILKILPTQGRTTY 261
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
LFSAT+ S + + +A L +P + + L + K L+Y++ E I
Sbjct: 262 LFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLIVVPGGLKDTYLVYLLNEFI 321
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+ T+IF TK + E ++ L + +GD++Q+ R + F+A + L+ T
Sbjct: 322 G--KTTIIFTRTKANAERISGLCNLLEFNATALHGDLNQNQRTGALDLFKAGRKSILVAT 379
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHL 383
DVAARG+DIP +D VIN+D P K ++HRVGR ARAGR+G + S V+ D+ +L +
Sbjct: 380 DVAARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEE 439
Query: 384 FLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETI 419
L K + ++E++L + K ANGE I
Sbjct: 440 VLGKKLPKESVDKEMILHFRDSVDK-----ANGEVI 470
>gi|453082962|gb|EMF11008.1| ATP-dependent rRNA helicase RRP3 [Mycosphaerella populorum SO2202]
Length = 516
Score = 253 bits (645), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 141/354 (39%), Positives = 207/354 (58%), Gaps = 9/354 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L + + A GYK PT IQR+++P+ L G DV+ +A TGSGKTAAF +P+LQ
Sbjct: 90 FAELGVREELCDACISLGYKTPTAIQRESIPIALQGKDVIGLAETGSGKTAAFALPILQA 149
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L + Q L+L+PTR+LA Q + + LG +++ +++VGG M Q LA+ P
Sbjct: 150 LLEK--QDHYFGLVLAPTRELAYQISQQFEALGSLINVKCAVIVGGMDMTPQQIALAKKP 207
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
II+ATPGRLM HL + SL+ ++Y+V DEAD L + F L KIL L R+T+L
Sbjct: 208 HIIVATPGRLMDHLENTKGFSLRKLKYLVMDEADRLLDLDFGPILDKILQVLPRERRTML 267
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDT---KISPDLKLAFFTLRQEEKHAALLYMIRE 261
FSAT+ + L +A L+ P VR+ + + + +LK ++ + + K L+Y++ E
Sbjct: 268 FSATMSTKLDNLTRAALQSP--VRVSISSSSYQTVKNLKQSYIFIPHKFKDIYLVYLVNE 325
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ Q +IF T + + L R G +G ++Q AR +++FR L+
Sbjct: 326 F--AGQTCIIFTRTINETARIAFLLRALGRSAIPLHGQLNQSARLGALNKFRGGSRDILV 383
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDM 375
TDVAARG+DIP +D V+N+D PP K +VHRVGR ARAG+ G A S VT D+
Sbjct: 384 ATDVAARGLDIPSVDLVLNYDLPPDSKTYVHRVGRTARAGKAGVAISIVTQYDV 437
>gi|452002395|gb|EMD94853.1| hypothetical protein COCHEDRAFT_1128751 [Cochliobolus
heterostrophus C5]
Length = 815
Score = 253 bits (645), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 141/357 (39%), Positives = 212/357 (59%), Gaps = 12/357 (3%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F++++LS + R + G+ PTPIQ K +P+ + G DVV A TGSGKTAAFL+P+L+R
Sbjct: 291 FQAMSLSRPILRGLASVGFTEPTPIQSKAVPIAMQGKDVVGGAETGSGKTAAFLIPILER 350
Query: 85 L---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L + +P R I PTR+LA+Q +L +TD+ +L+ GG S Q L
Sbjct: 351 LLYRQKKIPT--TRVAIFMPTRELAVQCFNVATKLASFTDITFALMAGGFSSREQEAVLK 408
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
PD++IATPGR + H+ ++++E +V DEAD + GF QL++IL + ++RQ
Sbjct: 409 TRPDVVIATPGRFIDHMHNTAAFQVENLEILVLDEADRMLEEGFESQLNEILTTIPKSRQ 468
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTK--ISPDLKLAFFTLRQ--EEKHAALLY 257
T+LFSAT+ S++ + + G+ P VRL VD+K L F LRQ E+K A L
Sbjct: 469 TMLFSATMTSSVDKLIRIGMDKP--VRLMVDSKKQTVKGLTQEFVRLRQGKEDKRLAYLM 526
Query: 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKT 317
I E I + ++ ++F K + V+F GL+ S +G+M Q+ R V FR+ K+
Sbjct: 527 YICEKIYT-EKVIVFFRQKKEAHRVRVVFALCGLKASELHGNMSQEQRIQAVEAFRSGKS 585
Query: 318 MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
+L+ TDVA+RG+DI + VIN++ P +I++HRVGR ARAGR+G A + D
Sbjct: 586 SYLLATDVASRGLDIKNVSTVINYEAPQTHEIYLHRVGRTARAGRSGRACTLAAEPD 642
>gi|294139619|ref|YP_003555597.1| DEAD/DEAH box helicase [Shewanella violacea DSS12]
gi|293326088|dbj|BAJ00819.1| ATP-dependent RNA helicase, DEAD box family [Shewanella violacea
DSS12]
Length = 435
Score = 253 bits (645), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 134/368 (36%), Positives = 217/368 (58%), Gaps = 6/368 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FES + +P + RAI GY+ TP+Q++ +P I G DV+A A+TG+GKTAAF +P+LQ+
Sbjct: 3 FESFSFAPEILRAISECGYQKMTPVQQEAIPAIRRGQDVLASAQTGTGKTAAFALPILQK 62
Query: 85 LNQH---VPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
+ + + RALIL+PTR+LA Q + + +Y D+ + + GG +E+Q ++L
Sbjct: 63 IFDNPMETQRSNARALILTPTRELASQIAENISDYSKYMDVSVLTIYGGVKLETQAQKLK 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ DII+ATPGRL+ HL +++L +V+++V DEAD + MGF + KI+ +++ RQ
Sbjct: 123 RGTDIIVATPGRLLEHLQAC-NLNLSNVDFLVLDEADRMLDMGFISDIQKIMQAVNKQRQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
LLFSAT SA+ + A L P L+ L+ + + + + Q K L +I +
Sbjct: 182 NLLFSATFSSAVKKLANDMLVKPKLINLNSQNSTADTVSQVIYPVEQRRKRELLSELIGK 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ QQ L+F +T+ + L +G+ SV +G+ Q R+ + F+ K L+
Sbjct: 242 K--NWQQVLVFTATRDAADKLVKELNLDGITSSVVHGEKAQGTRRRALREFKEGKVRALV 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
T+VAARG+DI L+ V+N+D P + +VHR+GR RAG++G A S V+ E+ L D+
Sbjct: 300 ATEVAARGLDIQDLEYVVNYDLPFLAEDYVHRIGRTGRAGKSGVAISLVSREEERTLYDI 359
Query: 382 HLFLSKPI 389
+ K +
Sbjct: 360 ETLIGKKL 367
>gi|50305787|ref|XP_452854.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74660562|sp|Q6CT85.1|RRP3_KLULA RecName: Full=ATP-dependent rRNA helicase RRP3
gi|49641987|emb|CAH01705.1| KLLA0C14608p [Kluyveromyces lactis]
Length = 487
Score = 253 bits (645), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 149/394 (37%), Positives = 221/394 (56%), Gaps = 12/394 (3%)
Query: 28 LNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQ 87
L+L P + A K Y PTPIQ K +P L G+D++ +A+TGSGKTAAF +P+L +L
Sbjct: 72 LDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWH 131
Query: 88 HVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDII 147
Q A IL+PTR+LA Q + LG +R + +VGG SM Q +L + P II
Sbjct: 132 D--QQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMMDQARDLMRKPHII 189
Query: 148 IATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL-SENRQTLLFS 206
IATPGRLM HL + +L+ ++Y+V DEAD L M F L +IL + ++ R T LFS
Sbjct: 190 IATPGRLMDHLENTKGFNLRKLKYLVMDEADRLLDMEFGPVLDRILNIIPTQGRTTYLFS 249
Query: 207 ATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSD 266
AT+ S + + +A L +P + + L + K+ L+Y++ E I
Sbjct: 250 ATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTFLIYLLNEFIG-- 307
Query: 267 QQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVA 326
+ T++F TK + E ++ L + +GD++Q+ R + F+A K L+ TDVA
Sbjct: 308 KSTIVFTRTKANAERISNLCNLLEFSATALHGDLNQNQRTGALDLFKAGKRSILVATDVA 367
Query: 327 ARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLS 386
ARG+DIP +D VIN+D P K ++HRVGR ARAGR+G + S V+ D+ +L + L
Sbjct: 368 ARGLDIPSVDIVINYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEDVLG 427
Query: 387 KPIRAAPSEEEVLLDMDGVMSKIDQAI-ANGETI 419
K + P E +D D +++ D ANGE +
Sbjct: 428 KKL---PKEN---VDKDAILALRDSVDKANGEVV 455
>gi|154316321|ref|XP_001557482.1| hypothetical protein BC1G_03746 [Botryotinia fuckeliana B05.10]
gi|160380649|sp|A6RUH2.1|DRS1_BOTFB RecName: Full=ATP-dependent RNA helicase drs1
gi|347828004|emb|CCD43701.1| hypothetical protein [Botryotinia fuckeliana]
Length = 801
Score = 253 bits (645), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 145/357 (40%), Positives = 213/357 (59%), Gaps = 12/357 (3%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+S++LS + R + G+ PTPIQ KT+P+ L G DVV A TGSGKTAAF+VP+L+R
Sbjct: 270 FQSMSLSRPILRGLATVGFTQPTPIQSKTIPVALLGKDVVGGAVTGSGKTAAFVVPVLER 329
Query: 85 L---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L + VP R IL PTR+LA+Q +L +TD++ L VGG S++ Q EL
Sbjct: 330 LLYRPKKVPTS--RVAILMPTRELAIQCHAVATKLASHTDIKFCLAVGGLSLKVQEAELR 387
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
PD+IIATPGR + H+ ++ ++E +V DEAD + GFA++L++IL + ++RQ
Sbjct: 388 LRPDVIIATPGRFIDHMRNSPSFTVDTLEILVLDEADRMLEAGFADELNEILTTIPKSRQ 447
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLA--FFTLR--QEEKHAALLY 257
T+LFSAT+ S++ + GL P VRL VD++ S L F LR +E K L
Sbjct: 448 TMLFSATMSSSVDNLIRVGLNRP--VRLLVDSQKSTAGTLVQEFIRLRPGREGKRMGYLL 505
Query: 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKT 317
+ ++ +D + ++F K ++F GL+ + +G M Q+ R V FR K
Sbjct: 506 YLCANVYTD-RVIVFFRQKKEAHRARIIFGLSGLKATELHGSMSQEQRIKSVEAFRDGKA 564
Query: 318 MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
FL+ TD+A+RG+DI +D VIN++ P I++HRVGR ARAGR+G A + D
Sbjct: 565 SFLLATDLASRGLDIKGVDTVINYEAPQSHDIYLHRVGRTARAGRSGRACTIAAEPD 621
>gi|118590800|ref|ZP_01548201.1| ATP-dependent RNA helicase protein [Stappia aggregata IAM 12614]
gi|118436776|gb|EAV43416.1| ATP-dependent RNA helicase protein [Stappia aggregata IAM 12614]
Length = 436
Score = 253 bits (645), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 141/375 (37%), Positives = 214/375 (57%), Gaps = 8/375 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+SL LS + A+ GY PTPIQ+K +PLIL G D++ +A+TG+GKTAAF +P++ R
Sbjct: 4 FQSLGLSNGLVTAVSENGYDTPTPIQQKAIPLILEGRDLMGLAQTGTGKTAAFGLPLIDR 63
Query: 85 LN----QHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
L + VP+G RALIL+PTR+L Q K ++T LR+S +VGG S+ Q + L
Sbjct: 64 LQAEKKKAVPKG-TRALILAPTRELVNQIAKNLISFLKHTPLRVSSVVGGVSINGQIKRL 122
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
++ DI++ATPGRL+ L + E + L++ Y+V DEAD + +GF L +I G +++ R
Sbjct: 123 SKGTDILVATPGRLLD-LVDREAIDLRTASYLVLDEADQMLDLGFIHALRRIAGLVADKR 181
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSAT+P + E A++ LR+P V + K + + + + + K L+ +R
Sbjct: 182 QTLLFSATMPKQINELAQSYLRNPERVEVAPAGKTADKVTQSVHFMDKNSKGDFLVDQLR 241
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
+ D +L+F TKH E L G+ +G+ Q+ R + R L
Sbjct: 242 DK--PDGLSLVFCRTKHGAERLMRKLSHSGISAGSIHGNKSQNQRDRAIKELREGTINVL 299
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLD 380
+ TDVAARGIDIP + +V N++ P + +VHR+GR ARAG G A + E++
Sbjct: 300 VATDVAARGIDIPGVSHVYNFELPEVAEAYVHRIGRTARAGAEGEAIALCAPEEIGLFRQ 359
Query: 381 LHLFLSKPIRAAPSE 395
+ + I A E
Sbjct: 360 IEKLIGIEITVAGGE 374
>gi|424868021|ref|ZP_18291789.1| Putative ATP-dependent RNA helicase [Leptospirillum sp. Group II
'C75']
gi|206603692|gb|EDZ40172.1| Putative ATP-dependent RNA helicase [Leptospirillum sp. Group II
'5-way CG']
gi|387221616|gb|EIJ76157.1| Putative ATP-dependent RNA helicase [Leptospirillum sp. Group II
'C75']
Length = 444
Score = 253 bits (645), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 141/371 (38%), Positives = 210/371 (56%), Gaps = 3/371 (0%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE+L LSP + RA+ G+ PTPIQ++++P ++ G D++ +A+TG+GKT FL+P+L +
Sbjct: 3 FEALGLSPEILRALNDLGHASPTPIQKQSIPHVIDGRDLLGIAQTGTGKTGGFLLPVLHK 62
Query: 85 LNQHVPQG-GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
+ + G RAL+LSPTR+LA Q + K+ +Y LLVGG Q L +N
Sbjct: 63 IAEGRRHGIRNRALVLSPTRELATQIHQAAKDYAKYLHTNAVLLVGGVDFIRQERNLKRN 122
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
DI++ATPGRL+ H+ +++L + V+ DEAD + MGF ++ I+ QL + RQ+L
Sbjct: 123 WDIVVATPGRLLDHVRR-NNLTLANTSLVIIDEADRMLDMGFLPDINTIVRQLPKGRQSL 181
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLY-MIREH 262
LFSAT P + E A D +VR++ + K S + + T+ + LL ++ E
Sbjct: 182 LFSATCPPRIQELAATFQNDAVIVRVEPERKGSDHIHQEWITVSHGSQKLGLLKKVLDEG 241
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
S Q +IF TK E L++ + G +GD Q R +SRFR L+
Sbjct: 242 KSETGQVIIFTRTKRSAEDLSIALNDAGYPSDALHGDKSQPVRNRVLSRFRRGDLKVLVA 301
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
TDVAARG+DI + +VIN+D P + +VHR+GR RAGRTG A SF D + +
Sbjct: 302 TDVAARGLDIDGITHVINYDLPQTAEDYVHRIGRTGRAGRTGRALSFFHPADRDIVRSIE 361
Query: 383 LFLSKPIRAAP 393
KPI +P
Sbjct: 362 TMAGKPIPHSP 372
>gi|238917309|ref|YP_002930826.1| ATP-dependent RNA helicase DeaD [Eubacterium eligens ATCC 27750]
gi|238872669|gb|ACR72379.1| ATP-dependent RNA helicase DeaD [Eubacterium eligens ATCC 27750]
Length = 571
Score = 253 bits (645), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 148/430 (34%), Positives = 244/430 (56%), Gaps = 25/430 (5%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ LN+ + RA++ G++ +PIQ + +P +L G DV+ A+TG+GKTAA+ +PMLQ+
Sbjct: 3 FDELNIDERILRAVEDMGFEETSPIQTQAIPAVLEGIDVIGQAQTGTGKTAAYSIPMLQK 62
Query: 85 LNQHV--PQGGVRALILSPTRDLALQTLKFTKELGRY-TDLRISLLVGGDSMESQFEELA 141
+N V PQ A++L PTR+LA+Q + ++L +Y +D+++ + GG + Q + L
Sbjct: 63 INPDVKKPQ----AIVLCPTRELAVQVAEEIRKLAKYMSDIKVLPVYGGQEIVRQIKSLK 118
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
II+ TPGR+M H+ + + SV V+ DEAD + MGF E + IL + E RQ
Sbjct: 119 AGVQIIVGTPGRVMDHMRR-KTVKFDSVSMVILDEADEMLDMGFREDMETILTETPEERQ 177
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
T+LFSAT+P + E A+ +D ++++ ++ ++ +R + K L +I
Sbjct: 178 TVLFSATMPKPIMEIARKFQKDARIIKVVRKELTVSNIDQFYYEVRPKNKTEILSRLI-- 235
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
I + + +++F +TK V+ L + G +GDM Q R + FR+ KT LI
Sbjct: 236 DIYNPKLSVVFCNTKRQVDELISELKGRGYFADGIHGDMKQQQRDRVMDDFRSGKTEILI 295
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TDVAARGID+ +D V N+D P + +VHR+GR RAG++G A SF++ ++ L D+
Sbjct: 296 ATDVAARGIDVDGVDIVFNYDLPQDEEYYVHRIGRTGRAGKSGLALSFISGREVYKLKDI 355
Query: 382 HLF-----LSKPIRAAPSEEEVL-LDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRV 435
+ L+KPI PS ++V MDG+ KI + I E + ++D+V + V
Sbjct: 356 ERYCKTKILAKPI---PSLDDVKNTKMDGIFDKIKEMIEADEH------RAMLDMVEEHV 406
Query: 436 REIIDSSADL 445
+ +S D+
Sbjct: 407 NQEDYTSMDM 416
>gi|410953778|ref|XP_003983547.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
DDX27 [Felis catus]
Length = 920
Score = 253 bits (645), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 141/392 (35%), Positives = 224/392 (57%), Gaps = 4/392 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ +NLS + +AI G+K PTPIQ+ +P+ L G D+ A A TG+GKTAAF +P+L+R
Sbjct: 343 FQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLER 402
Query: 85 LNQHVPQGGV-RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L Q V R L+L PTR+L +Q TK+L ++ ++ L VGG ++SQ L
Sbjct: 403 LIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDVKSQEAALRAA 462
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
PDI+IATPGRL+ HL L S+E ++ DEAD + F EQ+ +I+ S +RQT+
Sbjct: 463 PDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTM 522
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR--QEEKHAALLYMIRE 261
LFSAT+ + + A L++P + ++ +T ++P L+ F +R +E A++ +
Sbjct: 523 LFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDREAIVAALLT 582
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+D ++F TK +++L GL+ +G++ Q R + RF+ + L+
Sbjct: 583 RTFTD-HVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILV 641
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TDVAARG+DI + VIN+ P K +VHRVGR ARAGR G + S V E+ L ++
Sbjct: 642 ATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEI 701
Query: 382 HLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAI 413
P++A ++V+L + K+++ +
Sbjct: 702 VKAAKAPVKARILPQDVILKFRDKIEKMEKDV 733
>gi|85816749|gb|EAQ37935.1| DEAD/DEAH box helicase [Dokdonia donghaensis MED134]
Length = 425
Score = 253 bits (645), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 136/356 (38%), Positives = 209/356 (58%), Gaps = 5/356 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+SL LS + +A+ KGY P+PIQ+K +P +L G DV+A A+TG+GKTA F +PML
Sbjct: 3 FKSLGLSDALLKAVSEKGYTTPSPIQQKAIPKVLEGKDVLASAQTGTGKTAGFTLPMLHN 62
Query: 85 LNQHVPQG--GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
L + QG VRAL+L+PTR+LA Q +E +Y D++ +++ GG + Q + Q
Sbjct: 63 LIANPRQGRRKVRALVLTPTRELAAQIYDNVREYSKYVDIKSTVIFGGVNQNPQVRTIRQ 122
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
DI++ATPGRL+ L +SL +E++V DEAD + MGF + K+L + RQ
Sbjct: 123 GVDILVATPGRLLD-LENQGLLSLSDIEFLVLDEADRMLDMGFIHDIKKVLRLVPAKRQN 181
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
LLFSAT + + A + L +P LV + + + + + + K L+ I E
Sbjct: 182 LLFSATFNKDIKKLASSILTNPVLVEATPENTTAEKVDQKTYRVDKSRKTEMLIKFINE- 240
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
+ Q L+F TKH L+ + G+ + +G+ Q+AR ++ F++ K L+
Sbjct: 241 -GNWDQVLVFTRTKHGANRLSQKLDKAGITSAAIHGNKTQNARVKALAGFKSGKIRVLVA 299
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
TD+AARG+DIPLL VIN++ P P+ +VHR+GR RAG +G A S V +++AY+
Sbjct: 300 TDIAARGLDIPLLPYVINYELPNVPEDYVHRIGRTGRAGASGQAISLVGVDEVAYV 355
>gi|374366617|ref|ZP_09624693.1| RNA helicase [Cupriavidus basilensis OR16]
gi|373101750|gb|EHP42795.1| RNA helicase [Cupriavidus basilensis OR16]
Length = 577
Score = 253 bits (645), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 140/376 (37%), Positives = 209/376 (55%), Gaps = 17/376 (4%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L LS + RA+ +GY PTPIQ + +P IL G D++A A+TG+GKTA F +P+LQ
Sbjct: 13 FSELGLSDKLMRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPLLQL 72
Query: 85 LN-----------QHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSM 133
L+ Q +P VRAL+L+PTR+LA Q + + G+Y LR ++ GG +
Sbjct: 73 LSESSAGREPARGQRLP---VRALVLTPTRELAAQVEESVRNYGKYLKLRSMVMFGGVGI 129
Query: 134 ESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKIL 193
Q E+L + DI++ATPGRL+ HLS+ + L VE +V DEAD + MGF + KIL
Sbjct: 130 NPQIEQLKRGVDIVVATPGRLLDHLSQ-RTIDLSHVEMLVLDEADRMLDMGFIHDIRKIL 188
Query: 194 GQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHA 253
L RQ LLFSAT + A L +P + + + + + + +E K
Sbjct: 189 NVLPPKRQNLLFSATFSDEIRGLADRLLDNPASIEVARRNTTAETVAQRVYPVDRERKRE 248
Query: 254 ALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFR 313
L +++RE+ Q L+F TKH L ++GL +G+ Q AR ++ F+
Sbjct: 249 LLAHLVREN--DWHQVLVFTRTKHGANRLAEQLDKDGLSALAIHGNKSQSARTRALTEFK 306
Query: 314 ARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSE 373
A L+ TD+AARGIDI L +V+N+D P P+ +VHR+GR RAG G A S V +
Sbjct: 307 AGTLRLLVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGAEGEAISLVCVD 366
Query: 374 DMAYLLDLHLFLSKPI 389
+++ + D+ + + I
Sbjct: 367 EISLMRDIERLIKRQI 382
>gi|85373802|ref|YP_457864.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594]
gi|84786885|gb|ABC63067.1| DNA and RNA helicase [Erythrobacter litoralis HTCC2594]
Length = 492
Score = 253 bits (645), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 140/365 (38%), Positives = 212/365 (58%), Gaps = 9/365 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L LS V +A+ KGY PTPIQ + +P +L G D++ +A+TG+GKTAAF++P + R
Sbjct: 6 FDQLGLSQPVLQALDMKGYNEPTPIQAQAIPPVLEGRDLLGIAQTGTGKTAAFMLPSIDR 65
Query: 85 L---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L + P R L+L+PTR+LA Q + K+ G L++ +VGG S+ +L
Sbjct: 66 LREADNQTPFKSCRMLVLAPTRELAGQIAQSAKDYGAMAGLKVHSIVGGTSVGKDRNKLH 125
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ DI++ATPGRL+ L + + L +VE +V DEAD + +GF L +I + RQ
Sbjct: 126 RGTDILVATPGRLLD-LIDQKAFKLNAVEILVLDEADQMLDLGFIHALRQINDLVPAERQ 184
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI-- 259
TL FSAT+P + E R+P V + + + F ++Q+EK A L+ MI
Sbjct: 185 TLFFSATMPKQIQELVGKYCRNPVKVSVTPAATTAERIDQYLFMVQQDEKQA-LIEMILK 243
Query: 260 -REHISSDQQ-TLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKT 317
R + Q+ L+F TKH + + R+ G+E + +G+ Q R+ + F+ KT
Sbjct: 244 GRHAVPGKQERILVFTRTKHGADRVVKKLRQAGIESNAIHGNKSQPQRQRALDEFKRAKT 303
Query: 318 MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAY 377
LI TDVAARGIDIP + +VIN++ P P+ +VHR+GR ARAG+ G A +F ++ AY
Sbjct: 304 PILIATDVAARGIDIPGVSHVINYELPNVPEQYVHRIGRTARAGKDGVAIAFCAEDERAY 363
Query: 378 LLDLH 382
L D+
Sbjct: 364 LKDIQ 368
>gi|406937818|gb|EKD71181.1| hypothetical protein ACD_46C00260G0006 [uncultured bacterium]
Length = 543
Score = 253 bits (645), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 145/366 (39%), Positives = 219/366 (59%), Gaps = 12/366 (3%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F LNL+ ++ +A+K GY PT +Q K++P IL+G D+VA A+TG+GKTAAF++P LQR
Sbjct: 3 FAQLNLNDHLHKALKACGYTEPTSVQAKSIPAILAGNDLVACAQTGTGKTAAFVLPALQR 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L+ P R LIL+PTR+LA Q K G++ I LVGG Q ++LA+
Sbjct: 63 LSMQKPSKTTRILILTPTRELAAQITKAASLYGKFLKFNIVSLVGGMPYHHQIKDLARGA 122
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
DII+ATPGRL+ H+ E + + L VE +V DEAD + MGF + + I E RQTLL
Sbjct: 123 DIIVATPGRLLDHI-ESKRVDLSHVEMLVLDEADRMLDMGFIDDVTTIAKLTPEQRQTLL 181
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDV-DTKIS-PDLKLAFFTLRQEEKHAALLYMIREH 262
FSAT+ L+ + L++P +R+D+ + KIS P +K + + K+ + +H
Sbjct: 182 FSATIDKQLSHVIRHLLKNP--IRIDLSNEKISAPKIKQELYRV----KNTQHKLQLLKH 235
Query: 263 ISSDQ---QTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319
+ D+ + +IF +TK + + L +EG + +GD+ Q+ R V + R K F
Sbjct: 236 LLGDKNIYKAIIFSATKMNADRLADQLCDEGFPAAALHGDLRQNVRNRTVEQLRRGKIQF 295
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLL 379
L+ TDVAARG+DI + +VIN+D P + +VHR+GR RAG++G A SFV DM ++
Sbjct: 296 LVATDVAARGLDISDITHVINYDLPRFSEDYVHRIGRTGRAGKSGVAISFVLPTDMRHVQ 355
Query: 380 DLHLFL 385
+ ++
Sbjct: 356 RIERYI 361
>gi|281351106|gb|EFB26690.1| hypothetical protein PANDA_000812 [Ailuropoda melanoleuca]
Length = 703
Score = 253 bits (645), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 149/429 (34%), Positives = 240/429 (55%), Gaps = 16/429 (3%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ +NLS + +AI G+K PTPIQ+ +P+ L G D+ A A TG+GKTAAF +P+L+R
Sbjct: 157 FQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLER 216
Query: 85 LNQHVPQGGV-RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L Q V R L+L PTR+L +Q TK+L ++ ++ L VGG ++SQ L
Sbjct: 217 LIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDVKSQEAALRAA 276
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
PDI+IATPGRL+ HL L S+E ++ DEAD + F EQ+ +I+ S +RQT+
Sbjct: 277 PDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTM 336
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR--QEEKHAALLYMIRE 261
LFSAT+ + + A L++P + ++ +T ++P L+ F +R +E A++ +
Sbjct: 337 LFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLT 396
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+D ++F TK +++L GL+ +G++ Q R + RF+ + L+
Sbjct: 397 RTFTD-HVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILV 455
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TDVAARG+DI + VIN+ P K +VHRVGR ARAGR G + S V E+ L ++
Sbjct: 456 ATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEI 515
Query: 382 HLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDS 441
P++A ++V+L + K+++ +Y V+ L ++ +E+ S
Sbjct: 516 VKAAKAPVKARILPQDVILKFRDKIEKMEK------DVYA-----VLQLEAEE-KELQQS 563
Query: 442 SADLNSLQR 450
A +N+ +R
Sbjct: 564 EAQINTAKR 572
>gi|330830109|ref|YP_004393061.1| DEAD box family ATP-dependent RNA helicase [Aeromonas veronii B565]
gi|406676609|ref|ZP_11083795.1| hypothetical protein HMPREF1170_02003 [Aeromonas veronii AMC35]
gi|423201999|ref|ZP_17188578.1| hypothetical protein HMPREF1167_02161 [Aeromonas veronii AER39]
gi|423209186|ref|ZP_17195740.1| hypothetical protein HMPREF1169_01258 [Aeromonas veronii AER397]
gi|328805245|gb|AEB50444.1| ATP-dependent RNA helicase, DEAD box family [Aeromonas veronii
B565]
gi|404615610|gb|EKB12572.1| hypothetical protein HMPREF1167_02161 [Aeromonas veronii AER39]
gi|404619031|gb|EKB15951.1| hypothetical protein HMPREF1169_01258 [Aeromonas veronii AER397]
gi|404626832|gb|EKB23642.1| hypothetical protein HMPREF1170_02003 [Aeromonas veronii AMC35]
Length = 431
Score = 253 bits (645), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 138/369 (37%), Positives = 214/369 (57%), Gaps = 6/369 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FES + +P + RA+ GY+ TP+Q++ +P I G DV+A A+TG+GKTAAF +P+LQR
Sbjct: 3 FESFDFAPEILRAVSDCGYQEMTPVQQQAIPAIRRGRDVLASAQTGTGKTAAFALPILQR 62
Query: 85 LNQH---VPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L + V R LIL+PTR+LA Q + +Y D+ +VGG + Q ++L
Sbjct: 63 LVDNPAPVQPSNARVLILTPTRELAAQVASNINDFAKYLDITTITIVGGGKQDVQAKKLK 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
II+ATPGRL+ HL+ ++SL VE +V DEAD + MGF+ + KIL +++ RQ
Sbjct: 123 AGAHIIVATPGRLLEHLTAC-NLSLSGVECLVMDEADRILDMGFSADVQKILQAVNKTRQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
LLFSAT A+ + A L P +V ++ + + + + Q+ K L +I +
Sbjct: 182 NLLFSATFSDAVKKLANLMLDRPQIVSVNKQNSTADTVSHTVYPVEQKRKRELLSELIGK 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ QQ L+F ST+ + L +G++ +V +G+ Q R+ + F K L+
Sbjct: 242 Q--NWQQVLVFASTRESCDVLVEELNLDGIKSAVVHGEKAQGNRRRALREFMEGKVRVLV 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
T+VAARG+DIP L+ V+N+D P + +VHR+GR RAG+ G A SFV+ E+ LL++
Sbjct: 300 ATEVAARGLDIPDLEYVVNYDLPFLAEDYVHRIGRTGRAGKRGMAISFVSREEERTLLEI 359
Query: 382 HLFLSKPIR 390
+ + IR
Sbjct: 360 EALIGQKIR 368
>gi|73992237|ref|XP_534451.2| PREDICTED: probable ATP-dependent RNA helicase DDX27 isoform 1
[Canis lupus familiaris]
Length = 765
Score = 252 bits (644), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 149/429 (34%), Positives = 240/429 (55%), Gaps = 16/429 (3%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ +NLS + +AI G+K PTPIQ+ +P+ L G D+ A A TG+GKTAAF +P+L+R
Sbjct: 187 FQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLER 246
Query: 85 LNQHVPQGGV-RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L Q V R L+L PTR+L +Q TK+L ++ ++ L VGG ++SQ L
Sbjct: 247 LIYKPRQSPVTRVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDVKSQEAALRAA 306
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
PDI+IATPGRL+ HL L S+E ++ DEAD + F EQ+ +I+ S +RQT+
Sbjct: 307 PDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTM 366
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR--QEEKHAALLYMIRE 261
LFSAT+ + + A L++P + ++ +T ++P L+ F +R +E A++ +
Sbjct: 367 LFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFVRIRPNREGDREAIVAALLT 426
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+D ++F TK +++L GL+ +G++ Q R + RF+ + L+
Sbjct: 427 RTFTD-HVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILV 485
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TDVAARG+DI + VIN+ P K +VHRVGR ARAGR G + S V E+ L ++
Sbjct: 486 ATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEI 545
Query: 382 HLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDS 441
P++A ++V+L + K+++ +Y V+ L ++ +E+ S
Sbjct: 546 VKAAKAPVKARILPQDVILKFRDKIEKMEK------DVYA-----VLQLEAEE-KELQQS 593
Query: 442 SADLNSLQR 450
A +N+ +R
Sbjct: 594 EAQINTAKR 602
>gi|393783444|ref|ZP_10371617.1| hypothetical protein HMPREF1071_02485 [Bacteroides salyersiae
CL02T12C01]
gi|392668877|gb|EIY62370.1| hypothetical protein HMPREF1071_02485 [Bacteroides salyersiae
CL02T12C01]
Length = 421
Score = 252 bits (644), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 138/366 (37%), Positives = 221/366 (60%), Gaps = 5/366 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE+LNL + +A++ +GY PTPIQ +++P++L G D++ A+TG+GKTAAF +P+LQ+
Sbjct: 3 FENLNLIEPILKALQEEGYTSPTPIQEQSIPVLLQGKDLLGCAQTGTGKTAAFSIPILQK 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L + + G++ALIL+PTR+LA+Q + + GRYT L+ +++ GG + Q + L
Sbjct: 63 LYKTDHRKGIKALILTPTRELAIQIGECFEAYGRYTGLKHAVIFGGVGQKPQTDALRNGV 122
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
I++ATPGRL+ +++ +SLK++++ V DEAD + MGF + +IL L RQTL
Sbjct: 123 QILVATPGRLLDLITQ-GFISLKTLDFFVLDEADRMLDMGFIHDIRRILKLLPAKRQTLF 181
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLD-VDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
FSAT+P + A + L DP V + + + + +F ++E+K L + + I
Sbjct: 182 FSATMPPEIETLANSMLTDPEKVEVTPASSTVDTIAQHVYFVEKKEKKDLLLHLLKDKSI 241
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
S LIF TK+ + L + G+ +G+ Q+AR+ ++ F+ LI T
Sbjct: 242 ES---VLIFTRTKYGADKLARTLTKAGIRAEAIHGNKSQNARQRALTEFKNHTLRVLIAT 298
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHL 383
D+AARGID+ L +VIN++ P P+ +VHR+GR RAG G A SF SE++ YL D+
Sbjct: 299 DIAARGIDVDQLSHVINYELPNVPETYVHRIGRTGRAGHEGIAISFCESEEIPYLKDIQK 358
Query: 384 FLSKPI 389
+ K I
Sbjct: 359 LIGKTI 364
>gi|329121361|ref|ZP_08249987.1| RNA helicase DeaD [Dialister micraerophilus DSM 19965]
gi|327469770|gb|EGF15236.1| RNA helicase DeaD [Dialister micraerophilus DSM 19965]
Length = 497
Score = 252 bits (644), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 128/354 (36%), Positives = 211/354 (59%), Gaps = 5/354 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L LS + +A+ G++ P+PIQ++ +P+ + G D++ A+TG+GKTAAF +P+LQR
Sbjct: 11 FKELGLSEEIMKAVADMGFEEPSPIQKEAVPIAMQGKDLIGQAQTGTGKTAAFGIPILQR 70
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
++ P G +A++LSPTR+LA+Q+ + L +Y +++ + GG +E QF L +
Sbjct: 71 IDTSKP--GPQAIVLSPTRELAIQSAEEINHLAQYMNIKTIPIYGGQDIERQFRALKKKT 128
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
+II+ATPGRLM H+ + + L +V+ V DE D + MGF + + I+ + RQTL
Sbjct: 129 NIIVATPGRLMDHMKR-KTIDLSNVQIAVLDEGDEMVDMGFIDDIRTIMAATPKERQTLF 187
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P+ + E A + L +P +V++ T ++ + L +K AL ++ +
Sbjct: 188 FSATMPAPIRELANSFLNEPEIVKIKAATVTIDLIEQEYIELPDRQKFDALCRLL--DMQ 245
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
S + ++FV TK + + ++ +GD+ Q R + +F+ FL+ TD
Sbjct: 246 SPELAIVFVRTKRRADEVTEALKKRAYSAEGLHGDLSQQKRDSVIRQFKEGTIDFLVATD 305
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
VAARG+DI + +V N+D P P+I+VHRVGR RAG+TG A +FV S +M L
Sbjct: 306 VAARGLDISGVTHVYNFDMPQDPEIYVHRVGRTGRAGKTGLATTFVISREMGQL 359
>gi|145298647|ref|YP_001141488.1| DEAD-box ATP dependent DNA helicase [Aeromonas salmonicida subsp.
salmonicida A449]
gi|418360788|ref|ZP_12961453.1| DEAD-box ATP dependent DNA helicase [Aeromonas salmonicida subsp.
salmonicida 01-B526]
gi|142851419|gb|ABO89740.1| ATP-dependent RNA helicase, DEAD box family [Aeromonas salmonicida
subsp. salmonicida A449]
gi|356687976|gb|EHI52548.1| DEAD-box ATP dependent DNA helicase [Aeromonas salmonicida subsp.
salmonicida 01-B526]
Length = 431
Score = 252 bits (644), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 136/369 (36%), Positives = 213/369 (57%), Gaps = 6/369 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FES + +P + RA+ GY+ TP+QR+ +P I G DV+A A+TG+GKTAAF +P+LQR
Sbjct: 3 FESFDFAPEILRAVSDCGYQEMTPVQRQAIPTIRRGLDVLASAQTGTGKTAAFALPILQR 62
Query: 85 L---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L + R LIL+PTR+LA Q + +Y D+ + LVGG + Q ++L
Sbjct: 63 LVDKPAELQPSNARVLILTPTRELAAQVASNINDFAKYLDVTVLTLVGGGKQDVQAKKLK 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
II+ATPGRL+ HL+ ++SL VE +V DEAD + MGF+ + +IL +++ RQ
Sbjct: 123 AGAHIIVATPGRLLEHLTAC-NLSLSGVECLVLDEADRILDMGFSADVQQILQAVNKERQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
LLFSAT + + A L P ++ ++ + + + + Q+ K L +I +
Sbjct: 182 NLLFSATFSDGVKKLANVMLDKPQIISVNKQNSTADTVTHTVYPVEQKRKRELLSELIGK 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ Q L+F ST+ + L +G++ +V +GD Q +R+ + F K L+
Sbjct: 242 Q--NWPQVLVFASTRESCDELVAELNLDGIKSAVVHGDKAQGSRRRALREFTEGKLRVLV 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
T+VAARG+DIP L V+N+D P + +VHR+GR RAG++G A SFV+ E+ LL++
Sbjct: 300 ATEVAARGLDIPDLQYVVNYDLPFLAEDYVHRIGRTGRAGKSGMAISFVSREEERTLLEI 359
Query: 382 HLFLSKPIR 390
+ + IR
Sbjct: 360 EALIGQKIR 368
>gi|57529371|ref|NP_001006293.1| probable ATP-dependent RNA helicase DDX27 [Gallus gallus]
gi|53130268|emb|CAG31463.1| hypothetical protein RCJMB04_6k21 [Gallus gallus]
Length = 758
Score = 252 bits (644), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 145/408 (35%), Positives = 226/408 (55%), Gaps = 23/408 (5%)
Query: 15 KQKKKSKSGG-------------------FESLNLSPNVFRAIKRKGYKVPTPIQRKTMP 55
K++K+SK GG F+ +NLS + +AI G+K PTPIQ+ +P
Sbjct: 153 KERKRSKKGGQKEAESFFEDASEYDDNLSFQDMNLSRPLLKAITALGFKQPTPIQKACIP 212
Query: 56 LILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGV-RALILSPTRDLALQTLKFTK 114
+ L G D+ A A TG+GKTAAF++P+L+RL Q + R L+L PTR+L +Q TK
Sbjct: 213 VGLLGKDICACAATGTGKTAAFILPVLERLIYKPRQAPITRVLVLVPTRELGIQVHSVTK 272
Query: 115 ELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVF 174
+L +++ + L VGG +++Q L PDI+IATPGRL+ HL L SVE ++
Sbjct: 273 QLAQFSSVTTCLAVGGLDVKTQEAALRSGPDILIATPGRLIDHLHNCPSFHLSSVEVLIL 332
Query: 175 DEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTK 234
DEAD + F EQ+ +I+ S +RQT+LFSAT+ + + A L++P + ++ +T
Sbjct: 333 DEADRMLDEYFEEQMKEIIRLCSRHRQTMLFSATMTEEVKDLASVSLKNPTRIFVNSNTD 392
Query: 235 ISPDLKLAFFTLR--QEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLE 292
++P L+ F +R +E A++ + D ++F TK +++L GL
Sbjct: 393 VAPFLRQEFIRIRPNREGDREAIVSALLTRTFPD-HVMLFTQTKKQAHRMHILLGLMGLR 451
Query: 293 PSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVH 352
+G++ Q R + RF+ + L+ TDVAARG+DI + VIN+ P K +VH
Sbjct: 452 VGELHGNLSQAQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTTKHYVH 511
Query: 353 RVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLL 400
RVGR ARAGR G + S V E+ L ++ P++A ++V+L
Sbjct: 512 RVGRTARAGRAGRSVSLVGEEERKMLKEIVKAAKTPVKARILPQDVIL 559
>gi|328704199|ref|XP_001943651.2| PREDICTED: probable ATP-dependent RNA helicase DDX27-like
[Acyrthosiphon pisum]
Length = 771
Score = 252 bits (644), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 142/383 (37%), Positives = 223/383 (58%), Gaps = 23/383 (6%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
++ F +N+S + +AI Y PTPIQ +P+ L G D+ A TG+GKTAA+++P
Sbjct: 163 ENASFYQMNISRPLMKAISALNYVHPTPIQAAAIPVALLGRDICGCAATGTGKTAAYMLP 222
Query: 81 MLQRLNQHVPQGGV---RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF 137
+L+RL + P+G R L+L PTR+L +Q + TK+L ++T + + L VGG ++ Q
Sbjct: 223 ILERL-LYRPKGFTPITRVLVLVPTRELGVQVYQVTKQLAQFTSVEVGLSVGGLELKVQE 281
Query: 138 EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS 197
L +NPD++IATPGRL+ HL SL +E +V DEAD + FA+Q+ +I+ +
Sbjct: 282 SILRKNPDVVIATPGRLLDHLQNTPSFSLADLEVLVLDEADRMLDENFADQMKEIINMCA 341
Query: 198 ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ---EEKHAA 254
RQT+LFSAT+ A+ + A L P + +D +T ++ +L+ F LRQ +++ A
Sbjct: 342 RTRQTMLFSATMTDAVNDLATVSLSKPVKIFVDSNTDVAFNLRQEFVRLRQGKEQDRDAT 401
Query: 255 LLYMI----REHISSDQQTLIFVSTK---HHVEFLNVLFREEGLEPSVCYGDMDQDARKI 307
L ++ R+H T+IFV TK H V+ L LF GL+ +G++ Q R
Sbjct: 402 LAALVCRTFRDH------TMIFVRTKADAHRVKILLGLF---GLKAGELHGNLSQPQRLE 452
Query: 308 HVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAF 367
+ +F+ + LI TDVAARG+DI + VIN+ PP + ++HRVGR ARAGR+G +
Sbjct: 453 ALRQFKDEELDLLIATDVAARGLDIRGVKAVINYTMPPTVEHYIHRVGRTARAGRSGVSV 512
Query: 368 SFVTSEDMAYLLDLHLFLSKPIR 390
S + +D L ++ P++
Sbjct: 513 SIASEQDRKVLKEVIRKAKNPVK 535
>gi|226509858|ref|NP_001147574.1| ATP-dependent RNA helicase DRS1 [Zea mays]
gi|195612276|gb|ACG27968.1| ATP-dependent RNA helicase DRS1 [Zea mays]
Length = 770
Score = 252 bits (644), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 170/495 (34%), Positives = 258/495 (52%), Gaps = 45/495 (9%)
Query: 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPM 81
+ F LNLS + RA + GY+ PTPIQ +PL L+G D+ A TGSGKTAAF +P+
Sbjct: 161 ANSFLELNLSRPLVRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPV 220
Query: 82 LQRL---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138
L+RL + VP +R LIL+PTR+LA Q ++L ++TD+R L+VGG S + Q
Sbjct: 221 LERLLFRPKRVP--AIRVLILTPTRELAAQVHSMIEKLAQFTDIRCCLIVGGLSTKVQEV 278
Query: 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198
L PDI++ATPGR++ HL + L+ + V+ DEAD L +GF+ ++ +++ +
Sbjct: 279 ALRSMPDIVVATPGRIIDHLRNSLSVGLEDLAVVILDEADRLLELGFSAEIQELIRMCPK 338
Query: 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTL-----RQEEKHA 253
RQT+LFSAT+ + E K L P VRL+ D + L + R+ + A
Sbjct: 339 RRQTMLFSATMTEEIDELIKLSLNKP--VRLEADPSLKRPATLTEEVVRIRRARESNQEA 396
Query: 254 ALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFR 313
LL + + + +IF TK L ++F G++ + +G++ Q R + FR
Sbjct: 397 VLLALCLKTFK--RSVIIFSGTKQSAHRLKIIFGLSGMKAAELHGNLTQAQRLEALELFR 454
Query: 314 ARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSE 373
++ FLI TDVAARGIDI + VIN+ P K ++HRVGR ARAGR G A +FVT +
Sbjct: 455 KQEVDFLIATDVAARGIDIVGVQTVINFACPRDVKTYLHRVGRTARAGREGYAVTFVTDD 514
Query: 374 DMAYL----------LDLHLFLSKPIRAAPSEEEVLLDM-----------------DGVM 406
D + L L + KP+ E L D + +
Sbjct: 515 DRSLLKAIAKKAGSQLKSRIVAEKPVAECAQLIEQLEDQISIIIREERVEREARKAEMEI 574
Query: 407 SKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLP 466
+K + IA+ + IY R +T ++R ++++ ++A + Q T+ + + L
Sbjct: 575 AKAENMIAHKDEIYSRPKRTW--FATEREKKLLVAAAKESLGQGKSTSGVISAKQAEDLR 632
Query: 467 SKESIRR--GKDLPR 479
KE RR KDLPR
Sbjct: 633 LKEKKRREHEKDLPR 647
>gi|383785235|ref|YP_005469805.1| ATP-dependent RNA helicase [Leptospirillum ferrooxidans C2-3]
gi|383084148|dbj|BAM07675.1| putative ATP-dependent RNA helicase [Leptospirillum ferrooxidans
C2-3]
Length = 467
Score = 252 bits (644), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 142/371 (38%), Positives = 206/371 (55%), Gaps = 3/371 (0%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L L+P + +A+ + VPTPIQ T+PLI+ G D++ +ARTG+GKT FL+P L R
Sbjct: 28 FADLGLAPEILKALNDIEHFVPTPIQAATIPLIIEGRDILGIARTGTGKTGGFLLPALHR 87
Query: 85 LNQ-HVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
+ Q + G R LILSPTR+LA QT +YT R LLVGG + Q L +
Sbjct: 88 IYQTRTAKQGFRVLILSPTRELANQTFSAAMSYSKYTRSRQILLVGGTDLRRQEMSLRKP 147
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
DI + TPGRL+ HL +++L + V+ DEAD + MGF + I+ L ++RQ+L
Sbjct: 148 WDIAVVTPGRLLDHLRR-GNINLAHISMVIIDEADRMLDMGFFPDIQAIVAGLPQDRQSL 206
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
LFSATLP + E A++ RD ++RL+ SP ++ T+ + +L I + +
Sbjct: 207 LFSATLPPRIQELARSFQRDAAIIRLNSSEPSSPQIEQEIVTVSHGSQKLGILKTILDSV 266
Query: 264 SSDQ-QTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
+ QT++F TK E L++ EG +GD Q R +++FR L+
Sbjct: 267 KNHTGQTIVFTRTKRGAEELSISLSGEGYSTDALHGDKSQHVRNRVLAKFRKGDLKILVA 326
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
TDVAARG+DI + +VIN+D P + +VHR+GR RAGRTG A SF D + +
Sbjct: 327 TDVAARGLDIEGITHVINYDLPQTAEDYVHRIGRTGRAGRTGKAISFYHPADTDTMRSIE 386
Query: 383 LFLSKPIRAAP 393
+PI P
Sbjct: 387 RMTGEPIPRHP 397
>gi|120597666|ref|YP_962240.1| DEAD/DEAH box helicase [Shewanella sp. W3-18-1]
gi|120557759|gb|ABM23686.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
Length = 550
Score = 252 bits (644), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 210/365 (57%), Gaps = 5/365 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F SL LS + +A+ +GY P+PIQ + +P +L G DV+A A+TG+GKTA F +P+L+
Sbjct: 14 FTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGQDVMAAAQTGTGKTAGFTLPLLEL 73
Query: 85 LN--QHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
L+ Q G VR L+L+PTR+LA Q + + G+Y LR +++ GG + Q +L
Sbjct: 74 LSKGQKAQAGQVRTLVLTPTRELAAQVAESVETYGKYLPLRSAVVFGGVPINPQIAKLRH 133
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
D+++ATPGRLM L + + +E +V DEAD + MGF + KIL L + RQ
Sbjct: 134 GVDVLVATPGRLMD-LYNQKAVKFNQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQN 192
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
L+FSAT + E AK + +P + + + +K + + +K A L +I++H
Sbjct: 193 LMFSATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKGQKSALLTQLIKQH 252
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
QQ L+F TKH L E G++ + +G+ Q AR ++ F+ + L+
Sbjct: 253 --DWQQVLVFSRTKHGANRLAKNLEEAGIKAAAIHGNKSQTARTKALADFKNGQVRVLVA 310
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
TD+AARG+DI L V+N+D P P+ +VHR+GR RAG +G A S V+SE++ L D+
Sbjct: 311 TDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSSEEIKLLNDIE 370
Query: 383 LFLSK 387
+++
Sbjct: 371 RLINR 375
>gi|390945687|ref|YP_006409447.1| DNA/RNA helicase [Alistipes finegoldii DSM 17242]
gi|390422256|gb|AFL76762.1| DNA/RNA helicase, superfamily II [Alistipes finegoldii DSM 17242]
Length = 473
Score = 252 bits (644), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 137/361 (37%), Positives = 209/361 (57%), Gaps = 6/361 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ LNL + A+ KGY PTPIQ + +P L G D++ A+TG+GKTAAF +P+LQ
Sbjct: 3 FKELNLIEPIMHAVAEKGYVTPTPIQEQAIPPALEGRDLMGCAQTGTGKTAAFTLPILQL 62
Query: 85 LNQHVPQGG---VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L+ G ++AL+L+PTR+LA+Q + ++ RYTDLR ++ GG + Q + L
Sbjct: 63 LSARPRTKGRRPIKALVLTPTRELAIQIDECCRDYARYTDLRHCVIFGGVNQRPQVDALQ 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ D+++ATPGRL+ + + +SL + + V DEAD + MGF + +IL L + RQ
Sbjct: 123 RGIDLLVATPGRLLDLIGQGY-VSLSDIRFFVLDEADRMLDMGFIHDIKRILPLLPKERQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
TL FSAT+PS + A + L DP V + + + + + EK L+ ++RE
Sbjct: 182 TLFFSATMPSDIVTLANSMLHDPVHVTVTPPASVVETISQSVMFAEKAEKKDLLISLLRE 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
S+ L+F TKH + + + + G+E +GD Q AR+ ++ FRA + LI
Sbjct: 242 R--SEGSVLVFSRTKHGADRIARILTKAGIEGRAIHGDKSQGARERAMNDFRAGRCRVLI 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TD+AARGIDI L VIN+D P + +VHR+GR RAG GTA +F + ++ L D+
Sbjct: 300 ATDIAARGIDISELPLVINYDLPEVAETYVHRIGRTGRAGHDGTAIAFCSEDERPLLKDI 359
Query: 382 H 382
Sbjct: 360 Q 360
>gi|374628683|ref|ZP_09701068.1| DEAD/DEAH box helicase domain protein [Methanoplanus limicola DSM
2279]
gi|373906796|gb|EHQ34900.1| DEAD/DEAH box helicase domain protein [Methanoplanus limicola DSM
2279]
Length = 529
Score = 252 bits (644), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 131/347 (37%), Positives = 209/347 (60%), Gaps = 6/347 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L++S + +AI+ G++ PTPIQ ++PLI+SG D+ A A+TG+GKTAAF +P+L++
Sbjct: 7 FNELDISNEILKAIEDMGFEEPTPIQNISIPLIMSGKDITAQAQTGTGKTAAFAIPLLEK 66
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY-TDLRISLLVGGDSMESQFEELAQN 143
+N + V+A++L+PTR+L +Q + L +Y D+RI + GG +E Q + +
Sbjct: 67 INTD--KLAVQAIVLAPTRELTIQIAEEFNRLIKYMADIRILPIYGGQPIERQISAMRRG 124
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
+II TPGR++ HL + +S+ V +VV DEAD + MGF E L +ILG + RQT+
Sbjct: 125 VQVIIGTPGRVIDHLGR-KTLSMSEVNFVVLDEADQMLDMGFREDLEEILGYAPKERQTV 183
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
LFSAT+P+ + +K+ +P V + T P ++ + +R+ EK L I I
Sbjct: 184 LFSATMPAPILRISKSFQHNPEFVSITPKTLTVPSIEQFYIEVRESEKADLLCRFI--DI 241
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
Q+++F +TK V+ L+ + R G +GD+ Q R + +FR LI T
Sbjct: 242 KGPGQSIVFCNTKKRVDELSSIMRSRGYFAEGLHGDLKQQQRDRVMGKFRNGTIDILIAT 301
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFV 370
DVAARGID+ ++ V N+D P + +VHR+GR RAG++G +++FV
Sbjct: 302 DVAARGIDVEDIETVYNYDVPQDTEYYVHRIGRTGRAGKSGASYTFV 348
>gi|119186507|ref|XP_001243860.1| hypothetical protein CIMG_03301 [Coccidioides immitis RS]
gi|118595360|sp|Q1E2B2.1|DRS1_COCIM RecName: Full=ATP-dependent RNA helicase DRS1
gi|392870577|gb|EAS32387.2| ATP-dependent RNA helicase DRS1 [Coccidioides immitis RS]
Length = 840
Score = 252 bits (644), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 144/367 (39%), Positives = 216/367 (58%), Gaps = 12/367 (3%)
Query: 15 KQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKT 74
K ++ S + F++ NLS + R + G+ PTPIQRK +P+ L G D+V A TGSGKT
Sbjct: 311 KSEETSSNSTFQNFNLSRPILRGLAAVGFSAPTPIQRKAIPVGLLGKDLVGGAVTGSGKT 370
Query: 75 AAFLVPMLQRL---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGD 131
AAF++P+L+RL + VP R IL PTR+LA+Q +L YTD+ LVGG
Sbjct: 371 AAFIIPILERLLYRPRKVPTS--RVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGF 428
Query: 132 SMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHK 191
S+ Q L Q PD+IIATPGR + H+ ++ ++E +V DEAD + GFA++L++
Sbjct: 429 SLREQENVLKQRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNE 488
Query: 192 ILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTK--ISPDLKLAFFTLR-- 247
IL + ++RQT+LFSAT+ ++ + + GL P VRL VD+K L F LR
Sbjct: 489 ILNTIPKSRQTMLFSATMTDSVDKLIRVGLNRP--VRLMVDSKKHTVGTLVQEFVRLRPG 546
Query: 248 QEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKI 307
+E K L ++ I ++ + ++F K ++F GL+ + +G M Q+ R
Sbjct: 547 REGKRMGYLVLLCNTIYTN-RVIVFFRQKKEAHRARIIFGLLGLKAAELHGSMSQEQRIN 605
Query: 308 HVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAF 367
V FR K FL+ TD+A+RG+DI +++VIN++ P +I++HRVGR ARAGR+G A
Sbjct: 606 AVEAFRDGKVPFLLATDLASRGLDIKGVESVINYEAPQSHEIYLHRVGRTARAGRSGRAC 665
Query: 368 SFVTSED 374
+ D
Sbjct: 666 TIAAEPD 672
>gi|426241599|ref|XP_004014677.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Ovis aries]
Length = 765
Score = 252 bits (644), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 156/451 (34%), Positives = 246/451 (54%), Gaps = 23/451 (5%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ +NLS + +AI G+K PTPIQ+ +P+ L G D+ A A TG+GKTAAF +P+L+R
Sbjct: 189 FQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLER 248
Query: 85 LNQHVPQGGV-RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L Q V R L+L PTR+L +Q TK+L ++ + L VGG ++SQ L
Sbjct: 249 LIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRAA 308
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
PDI+IATPGRL+ HL L S+E ++ DEAD + F EQ+ +I+ S +RQT+
Sbjct: 309 PDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTM 368
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR--QEEKHAALLYMIRE 261
LFSAT+ + + A L++P + ++ +T ++P L+ F +R +E A++ +
Sbjct: 369 LFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLM 428
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+D ++F TK +++L GL+ +G++ Q R + RF+ + L+
Sbjct: 429 RTFTD-HVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILV 487
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TDVAARG+DI + VIN+ P K +VHRVGR ARAGR G + S V E+ L ++
Sbjct: 488 ATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEI 547
Query: 382 HLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDS 441
P++A ++V+L + K+++ +Y V+ L ++ +E+ S
Sbjct: 548 VKAAKAPVKARILPQDVILKFRDKIEKMEK------DVYA-----VLQLEAEE-KEMQKS 595
Query: 442 SADLNSLQRTCTNAFRLYSKTKPLPSKESIR 472
A +N+ Q RL K K P+ E R
Sbjct: 596 EAQINTAQ-------RLLEKGKEAPNPEPER 619
>gi|404497424|ref|YP_006721530.1| ATP-dependent RNA helicase RhlE [Geobacter metallireducens GS-15]
gi|418066827|ref|ZP_12704184.1| DEAD/DEAH box helicase domain protein [Geobacter metallireducens
RCH3]
gi|78195025|gb|ABB32792.1| ATP-dependent RNA helicase RhlE [Geobacter metallireducens GS-15]
gi|373559816|gb|EHP86098.1| DEAD/DEAH box helicase domain protein [Geobacter metallireducens
RCH3]
Length = 451
Score = 252 bits (644), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 140/356 (39%), Positives = 211/356 (59%), Gaps = 9/356 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ NL P V + GY PTPIQ + +P ++ G DV+ +A+TG+GKTAAF +P+L R
Sbjct: 3 FKEFNLHPQVMAGVTAAGYTTPTPIQAQAIPTVMEGRDVMGLAQTGTGKTAAFALPILHR 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L Q +G VRAL+++PTR+LA Q LGR T LR + GG ++ Q ++L
Sbjct: 63 LAQG-ERGRVRALVIAPTRELAEQINDSFVTLGRQTRLRSVTVYGGVNVNPQIQKLKAGA 121
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
+I++A PGRL+ H+++ + L +E +V DEAD +F MGF L +IL QL RQTLL
Sbjct: 122 EIVVACPGRLLDHMAQ-GTIDLSHLEVLVLDEADQMFDMGFLPDLRRILKQLPPKRQTLL 180
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKL--AFFTLRQEEKHAALLYMIREH 262
FSAT+P + A+ LRDP V++ ++P + + A + + Q K LL ++R
Sbjct: 181 FSATMPIDIRVLAQEILRDPVTVQVGT---VAPAVTVTHALYPVEQHLKTPLLLELLRH- 236
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
+ + LIF TKH + L + G + + G++ Q+ R+ + FR L+
Sbjct: 237 -TDTESVLIFTRTKHRAKRLGEQMEKAGYKAASLQGNLSQNRRQAALDGFRDGTFQILVA 295
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
TD+AARGID+ + +VIN+D P + ++HR+GR RA R+G AF+ VTSED A +
Sbjct: 296 TDIAARGIDVSQVSHVINYDIPDTAEAYIHRIGRTGRAARSGDAFTMVTSEDTAMV 351
>gi|385208130|ref|ZP_10034998.1| DNA/RNA helicase, superfamily II [Burkholderia sp. Ch1-1]
gi|385180468|gb|EIF29744.1| DNA/RNA helicase, superfamily II [Burkholderia sp. Ch1-1]
Length = 520
Score = 252 bits (644), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 136/371 (36%), Positives = 211/371 (56%), Gaps = 9/371 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+SL LS + RA+ GY PTPIQ + +P +L+G D++A A+TG+GKTA F +P+LQR
Sbjct: 3 FDSLGLSEQLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPILQR 62
Query: 85 LNQH--VPQG----GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138
LN V G VRALIL+PTR+LA Q + + G+Y L+ +++ GG + Q
Sbjct: 63 LNSSPAVANGSGKRAVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIG 122
Query: 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198
L DI++ATPGRL+ H+ + + + L +E +V DEAD + MGF + ++L +L
Sbjct: 123 ALRSGVDIVVATPGRLLDHMQQ-KTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPP 181
Query: 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258
RQ LLFSAT + A L P L+ + + + + +++K L ++
Sbjct: 182 KRQNLLFSATFSDEIKTLADNLLDSPALIEVARRNTTAESVAQKIHPVDRDKKRELLTHL 241
Query: 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
I++H + Q L+F TKH L ++G+ +G+ Q AR ++ F+
Sbjct: 242 IKQH--NWFQVLVFTRTKHGANRLAEQLTKDGINSLAIHGNKSQSARTRALAEFKDGTLQ 299
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
L+ TD+AARGIDI L +V+N+D P P+ +VHR+GR RAG TG A S V +++ L
Sbjct: 300 VLVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLL 359
Query: 379 LDLHLFLSKPI 389
D+ + +P+
Sbjct: 360 KDIEKLIKRPV 370
>gi|410479720|ref|YP_006767357.1| DEAD/DEAH box helicase [Leptospirillum ferriphilum ML-04]
gi|406774972|gb|AFS54397.1| DEAD/DEAH box helicase domain protein [Leptospirillum ferriphilum
ML-04]
Length = 444
Score = 252 bits (644), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 141/371 (38%), Positives = 210/371 (56%), Gaps = 3/371 (0%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE+L LSP + RA+ G+ PTPIQ++++P ++ G D++ +A+TG+GKT FL+P+L +
Sbjct: 3 FEALGLSPEILRALNDLGHASPTPIQKQSIPHVIDGRDLLGIAQTGTGKTGGFLLPVLHK 62
Query: 85 LNQHVPQG-GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
+ + G RAL+LSPTR+LA Q + K+ +Y LLVGG Q L +N
Sbjct: 63 IAEGRRHGIRNRALVLSPTRELATQIHQAAKDYAKYLHTNAVLLVGGVDFIRQERNLKRN 122
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
DI++ATPGRL+ H+ +++L + V+ DEAD + MGF ++ I+ QL + RQ+L
Sbjct: 123 WDIVVATPGRLLDHVRR-NNLTLANTSLVIIDEADRMLDMGFLPDINTIVRQLPKGRQSL 181
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLY-MIREH 262
LFSAT P + E A D +VR++ + K S + + T+ + LL ++ E
Sbjct: 182 LFSATCPPRIQELAATFQNDAVIVRVEPERKGSDHIHQEWITVSHGSQKLGLLKKVLDEG 241
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
S Q +IF TK E L++ + G +GD Q R +SRFR L+
Sbjct: 242 KSETGQVIIFTRTKRSAEDLSIALNDAGYPSDALHGDKSQPVRNRVLSRFRRGDLKVLVA 301
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
TDVAARG+DI + +VIN+D P + +VHR+GR RAGRTG A SF D + +
Sbjct: 302 TDVAARGLDIDGITHVINYDLPQTAEDYVHRIGRTGRAGRTGRALSFFHPADRDIVRSIE 361
Query: 383 LFLSKPIRAAP 393
KPI +P
Sbjct: 362 TMAGKPIPHSP 372
>gi|320038882|gb|EFW20817.1| ATP-dependent RNA helicase DRS1 [Coccidioides posadasii str.
Silveira]
Length = 840
Score = 252 bits (644), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 144/367 (39%), Positives = 216/367 (58%), Gaps = 12/367 (3%)
Query: 15 KQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKT 74
K ++ S + F++ NLS + R + G+ PTPIQRK +P+ L G D+V A TGSGKT
Sbjct: 311 KSEETSSNSTFQNFNLSRPILRGLAAVGFSAPTPIQRKAIPIGLLGKDLVGGAVTGSGKT 370
Query: 75 AAFLVPMLQRL---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGD 131
AAF++P+L+RL + VP R IL PTR+LA+Q +L YTD+ LVGG
Sbjct: 371 AAFIIPILERLLYRPRKVPTS--RVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGF 428
Query: 132 SMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHK 191
S+ Q L Q PD+IIATPGR + H+ ++ ++E +V DEAD + GFA++L++
Sbjct: 429 SLREQENVLKQRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNE 488
Query: 192 ILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTK--ISPDLKLAFFTLR-- 247
IL + ++RQT+LFSAT+ ++ + + GL P VRL VD+K L F LR
Sbjct: 489 ILNTIPKSRQTMLFSATMTDSVDKLIRVGLNRP--VRLMVDSKKHTVGTLVQEFVRLRPG 546
Query: 248 QEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKI 307
+E K L ++ I ++ + ++F K ++F GL+ + +G M Q+ R
Sbjct: 547 REGKRMGYLVLLCNTIYTN-RVIVFFRQKKEAHRARIIFGLLGLKAAELHGSMSQEQRIN 605
Query: 308 HVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAF 367
V FR K FL+ TD+A+RG+DI +++VIN++ P +I++HRVGR ARAGR+G A
Sbjct: 606 AVEAFRDGKVPFLLATDLASRGLDIKGVESVINYEAPQSHEIYLHRVGRTARAGRSGRAC 665
Query: 368 SFVTSED 374
+ D
Sbjct: 666 TIAAEPD 672
>gi|451852848|gb|EMD66142.1| hypothetical protein COCSADRAFT_179496 [Cochliobolus sativus
ND90Pr]
Length = 814
Score = 252 bits (644), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 136/355 (38%), Positives = 209/355 (58%), Gaps = 8/355 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F++++LS + R + G+ PTPIQ K +P+ + G DVV A TGSGKTAAFL+P+L+R
Sbjct: 290 FQAMSLSRPILRGLASVGFTEPTPIQSKAVPIAMQGKDVVGGAETGSGKTAAFLIPILER 349
Query: 85 L---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L + +P R I PTR+LA+Q +L +TD+ +L+ GG S Q L
Sbjct: 350 LLYRQKKIPT--TRVAIFMPTRELAVQCFNVATKLASFTDITFALMAGGFSSREQEAVLK 407
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
PD++IATPGR + H+ ++++E +V DEAD + GF QL++IL + ++RQ
Sbjct: 408 TRPDVVIATPGRFIDHMHNTAAFQVENLEILVLDEADRMLEEGFESQLNEILTTIPKSRQ 467
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ--EEKHAALLYMI 259
T+LFSAT+ S++ + + G+ P + +D + L F LRQ E+K A L I
Sbjct: 468 TMLFSATMTSSVDKLIRIGMDKPVRLMVDAKKQTVKGLTQEFVRLRQGKEDKRLAYLMYI 527
Query: 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319
E I + ++ ++F K + V+F GL+ S +G+M Q+ R V FR+ K+ +
Sbjct: 528 CEKIYT-EKVIVFFRQKKEAHRVRVVFALCGLKASELHGNMSQEQRIQAVEAFRSGKSSY 586
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
L+ TDVA+RG+DI + VIN++ P +I++HRVGR ARAGR+G A + D
Sbjct: 587 LLATDVASRGLDIKNVSTVINYEAPQTHEIYLHRVGRTARAGRSGRACTLAAEPD 641
>gi|431931271|ref|YP_007244317.1| DNA/RNA helicase [Thioflavicoccus mobilis 8321]
gi|431829574|gb|AGA90687.1| DNA/RNA helicase, superfamily II [Thioflavicoccus mobilis 8321]
Length = 417
Score = 252 bits (644), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 142/371 (38%), Positives = 212/371 (57%), Gaps = 8/371 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+SL L+ + RAI +GY+ PTPIQ + +P IL G DV+A A+TG+GKTAAF +PMLQR
Sbjct: 3 FDSLCLTDELRRAIAAQGYRSPTPIQAQAIPAILDGRDVLAGAQTGTGKTAAFTLPMLQR 62
Query: 85 LNQHVPQGG---VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L + Q G RAL+L+PTR+LA Q + GRY LR +++ GG ++ Q +L
Sbjct: 63 LGER--QTGHQRPRALVLTPTRELAAQVGESIVTYGRYLPLRSAIIFGGVGIQPQIAQLR 120
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ DI++ATPGRL+ H+ + + L +E +V DEAD + MGF + ++L L NRQ
Sbjct: 121 RGVDIVVATPGRLLDHVGQ-RTLDLSGIEILVLDEADRMLDMGFIHDIRRVLRLLPTNRQ 179
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
+LLFSAT + + + A LRDP + + + + + +E K L ++I
Sbjct: 180 SLLFSATYSNEIEQLANGLLRDPVTIAVARRNTAAEQVSQLVHPVAKERKRELLSHLI-- 237
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
H Q L+F TKH L +G+ + +G+ Q AR ++ F+ L+
Sbjct: 238 HSQGWDQVLVFTRTKHGANRLTDQLVRDGIAAAAIHGNKSQSARTNALAGFKRGAVRALV 297
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TD+AARG+DI L V+N++ P P+ +VHR+GR RAG G AFS V E+ L+ +
Sbjct: 298 ATDIAARGLDIDQLPYVVNYELPNVPEDYVHRIGRTGRAGSAGAAFSLVCHEEQKLLVGI 357
Query: 382 HLFLSKPIRAA 392
L + I +A
Sbjct: 358 ERLLKRAIPSA 368
>gi|303317730|ref|XP_003068867.1| ATP-dependent RNA helicase DRS1, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240108548|gb|EER26722.1| ATP-dependent RNA helicase DRS1, putative [Coccidioides posadasii
C735 delta SOWgp]
Length = 840
Score = 252 bits (644), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 144/367 (39%), Positives = 216/367 (58%), Gaps = 12/367 (3%)
Query: 15 KQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKT 74
K ++ S + F++ NLS + R + G+ PTPIQRK +P+ L G D+V A TGSGKT
Sbjct: 311 KSEETSSNSTFQNFNLSRPILRGLAAVGFSAPTPIQRKAIPIGLLGKDLVGGAVTGSGKT 370
Query: 75 AAFLVPMLQRL---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGD 131
AAF++P+L+RL + VP R IL PTR+LA+Q +L YTD+ LVGG
Sbjct: 371 AAFIIPILERLLYRPRKVPTS--RVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGF 428
Query: 132 SMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHK 191
S+ Q L Q PD+IIATPGR + H+ ++ ++E +V DEAD + GFA++L++
Sbjct: 429 SLREQENVLKQRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNE 488
Query: 192 ILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTK--ISPDLKLAFFTLR-- 247
IL + ++RQT+LFSAT+ ++ + + GL P VRL VD+K L F LR
Sbjct: 489 ILNTIPKSRQTMLFSATMTDSVDKLIRVGLNRP--VRLMVDSKKHTVGTLVQEFVRLRPG 546
Query: 248 QEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKI 307
+E K L ++ I ++ + ++F K ++F GL+ + +G M Q+ R
Sbjct: 547 REGKRMGYLVLLCNTIYTN-RVIVFFRQKKEAHRARIIFGLLGLKAAELHGSMSQEQRIN 605
Query: 308 HVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAF 367
V FR K FL+ TD+A+RG+DI +++VIN++ P +I++HRVGR ARAGR+G A
Sbjct: 606 AVEAFRDGKVPFLLATDLASRGLDIKGVESVINYEAPQSHEIYLHRVGRTARAGRSGRAC 665
Query: 368 SFVTSED 374
+ D
Sbjct: 666 TIAAEPD 672
>gi|148262453|ref|YP_001229159.1| DEAD/DEAH box helicase [Geobacter uraniireducens Rf4]
gi|146395953|gb|ABQ24586.1| DEAD/DEAH box helicase domain protein [Geobacter uraniireducens
Rf4]
Length = 453
Score = 252 bits (644), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 144/380 (37%), Positives = 221/380 (58%), Gaps = 14/380 (3%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE+L LSP++ +AI GY PTPIQ + +PL L+G D++A A+TG+GKTAAF +P LQR
Sbjct: 3 FETLQLSPSILKAIAVCGYTTPTPIQEQAIPLALAGKDLIASAQTGTGKTAAFTLPALQR 62
Query: 85 LNQHVPQGG--VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
L+ P G R L+L+PTR+LA Q + G++ +R ++GG Q + L+Q
Sbjct: 63 LSTPSPINGKGPRILVLTPTRELANQVTDAVRNYGKFMRVRSGAILGGMPYREQLQLLSQ 122
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
D+I+ATPGRL+ HL E ++L +E ++ DEAD + MGF++ + KI NRQT
Sbjct: 123 PVDLIVATPGRLIDHL-ERGRINLSRLELLILDEADRMLDMGFSDDVDKIAAAAPANRQT 181
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDV-DTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
LLF+AT+ +A+ A+ L+DP VR+++ K S D + +H + +
Sbjct: 182 LLFTATMDDVMAKLAQRLLKDP--VRIEIAGQKTSHDQIEQRLHVVDNLQHKNRML---Q 236
Query: 262 HISSD---QQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
H+ +D + +IF +TK + L +G + +GDM Q+AR ++ R K
Sbjct: 237 HLIADGNLTKAIIFSATKRDADMLARELHAQGHAAAALHGDMTQNARNKTITNMRRGKVR 296
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
L+ TDVAARG+D+ + +VIN+D P + +VHR+GR RAG +G A SFV+ D+ YL
Sbjct: 297 LLVATDVAARGLDVTGISHVINFDLPKFAEDYVHRIGRTGRAGASGIAISFVSLNDINYL 356
Query: 379 LDLHLFLSK--PIRAAPSEE 396
+ + + P+ P E
Sbjct: 357 DRIERYTGQTLPLHVIPGLE 376
>gi|90414211|ref|ZP_01222192.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
gi|90324761|gb|EAS41299.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
Length = 431
Score = 252 bits (644), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 136/368 (36%), Positives = 224/368 (60%), Gaps = 6/368 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F S N SP + RA+ GY+ TPIQ++ +P G+D++A A+TG+GKTAAF +P++Q+
Sbjct: 3 FASQNFSPEIVRALTECGYEKLTPIQQQAIPHARRGSDILANAQTGTGKTAAFSLPIIQQ 62
Query: 85 -LNQHVPQG--GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L++ +G VRALIL+PTR+LA Q + E +YTDL+ + + GG M SQ L
Sbjct: 63 ILDKPKSRGRFNVRALILAPTRELAAQIAQNIAEYTKYTDLKTAAIYGGTKMSSQERTLE 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ DI++ATPGRL+ H+ +++++SL ++E++VFDEAD + MGF + K++G+++ N Q
Sbjct: 123 KGVDILVATPGRLIEHV-DLKNVSLTNIEFLVFDEADRMLDMGFITDMRKVMGEVNSNPQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
++FSAT + A LR P + +D + + + + + QE K L +I +
Sbjct: 182 IMMFSATSSKQMNALASDILRKPKRIMVDRENTTADTVAHVVYPVDQERKRELLSELIGK 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ +Q L+FV+ K L +++G++ +C+GD Q AR+ + F+ K ++
Sbjct: 242 --KNWKQVLVFVNYKETANELVKELKKDGIKAVLCHGDKAQSARRRALDEFKEGKARVMV 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
T+VAARG+DI L +V+N+D P + +VHR+GR RAG G A SFV+ E+ L+ +
Sbjct: 300 ATEVAARGLDIQALPHVVNFDMPFLAEDYVHRIGRTGRAGLKGHAISFVSKEEELTLVQV 359
Query: 382 HLFLSKPI 389
+ + I
Sbjct: 360 EQLIGQRI 367
>gi|325091017|gb|EGC44327.1| ATP-dependent RNA helicase drs1 [Ajellomyces capsulatus H88]
Length = 828
Score = 252 bits (644), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 138/355 (38%), Positives = 212/355 (59%), Gaps = 8/355 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F++ +LS + R + G+ PTPIQRKT+P+ L G DVV A TGSGKT AF++P+L+R
Sbjct: 306 FQAFSLSRPILRGLTSVGFTTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIIPILER 365
Query: 85 L---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L + VP R +IL PTR+LA+Q +L +TD+ LVGG S+ Q L
Sbjct: 366 LLYRPRKVPTS--RVVILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENILK 423
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ PD+IIATPGR + H+ ++ ++E +V DEAD + GFA++L++IL + ++RQ
Sbjct: 424 KRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQ 483
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR--QEEKHAALLYMI 259
T+LFSAT+ + + + + GL P + +D + L F LR +EEK L ++
Sbjct: 484 TMLFSATMTNNVDKLIRVGLNRPVRLMVDAKKQTVGTLIQEFVRLRPGREEKRLGYLIVL 543
Query: 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319
++I D + ++F +K + ++F GL+ + +G M Q+ R V FR K F
Sbjct: 544 CKNIYKD-RVIVFFRSKKEAHRVRIIFGLLGLKVTELHGSMSQEQRIKSVESFRDGKVSF 602
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
L+ TDVA+RG+DI ++ VIN++ P +I++HRVGR ARAGR+G A + D
Sbjct: 603 LLATDVASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPD 657
>gi|124515178|gb|EAY56689.1| putative ATP-dependent helicase [Leptospirillum rubarum]
Length = 444
Score = 252 bits (644), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 141/371 (38%), Positives = 210/371 (56%), Gaps = 3/371 (0%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE+L LSP + RA+ G+ PTPIQ++++P ++ G D++ +A+TG+GKT FL+P+L +
Sbjct: 3 FEALGLSPEILRALNDLGHASPTPIQKQSIPHVIDGRDLLGIAQTGTGKTGGFLLPVLHK 62
Query: 85 LNQHVPQG-GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
+ + G RAL+LSPTR+LA Q + K+ +Y LLVGG Q L +N
Sbjct: 63 IAEGRRHGIRNRALVLSPTRELATQIHQAAKDYAKYLHTNAVLLVGGVDFIRQERNLKRN 122
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
DI++ATPGRL+ H+ +++L + V+ DEAD + MGF ++ I+ QL + RQ+L
Sbjct: 123 WDIVVATPGRLLDHVRR-NNLTLANTSLVIIDEADRMLDMGFLPDINTIVRQLPKGRQSL 181
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLY-MIREH 262
LFSAT P + E A D +VR++ + K S + + T+ + LL ++ E
Sbjct: 182 LFSATCPPRIQELAATFQNDAVIVRVEPERKGSDHIHQEWITVSHGSQKLGLLKKVLDEG 241
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
S Q +IF TK E L++ + G +GD Q R +SRFR L+
Sbjct: 242 KSETGQVIIFTRTKRSAEDLSIALNDAGYPSDALHGDKSQPVRNRVLSRFRRGDLKVLVA 301
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
TDVAARG+DI + +VIN+D P + +VHR+GR RAGRTG A SF D + +
Sbjct: 302 TDVAARGLDIDGITHVINYDLPQTAEDYVHRIGRTGRAGRTGRALSFFHPADRDIVRSIE 361
Query: 383 LFLSKPIRAAP 393
KPI +P
Sbjct: 362 TMAGKPIPHSP 372
>gi|237752663|ref|ZP_04583143.1| ATP-dependent RNA helicase [Helicobacter winghamensis ATCC BAA-430]
gi|229376152|gb|EEO26243.1| ATP-dependent RNA helicase [Helicobacter winghamensis ATCC BAA-430]
Length = 515
Score = 252 bits (644), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 127/348 (36%), Positives = 200/348 (57%), Gaps = 6/348 (1%)
Query: 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQ 83
GFES +V R IK G+ P+PIQ++ +PLIL G D++A A+TG+GKTAAF +P++
Sbjct: 15 GFESFGFKKSVLRGIKEAGFSEPSPIQKEAIPLILDGLDIIAQAQTGTGKTAAFGLPLIN 74
Query: 84 RLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L G + LI++PTR+LA+Q +LG+Y ++ L GG + Q E L +
Sbjct: 75 NLKN---DGSIEVLIVTPTRELAMQVSDEIFKLGKYNRVKTVSLFGGQPIRRQIELLEKK 131
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
P +IIATPGRL+ HL E + VV DE+D + MGF + + +I LS +RQTL
Sbjct: 132 PQVIIATPGRLLDHLRN-ERLKNFYPSVVVLDESDEMLDMGFLDDIEEIFTYLSSDRQTL 190
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
LFSAT+P+ + A+ L +P L+++ D + D+ ++ + ++E+ A++ +I +
Sbjct: 191 LFSATMPTPIKHLAQKILSNPKLIKITQDDTTNQDISQRYYIINEQEREDAIVRLIDSEM 250
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
Q+ +IF K + L+ G + +GDM+Q R + F+ L+ T
Sbjct: 251 P--QKAIIFTRMKKEADILSERLLSRGFKAGALHGDMEQRERVKSIKAFKDSTIDILVAT 308
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVT 371
D+AARG+DI + +V N+ P P+ +VHR+GR RAG+ G A + T
Sbjct: 309 DIAARGLDISGVSHVFNFHIPLNPESYVHRIGRTGRAGKKGVAITLAT 356
>gi|409200280|ref|ZP_11228483.1| ATP-dependent RNA helicase [Pseudoalteromonas flavipulchra JG1]
Length = 411
Score = 252 bits (644), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 139/371 (37%), Positives = 225/371 (60%), Gaps = 7/371 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L L P + AI G+ PTPIQ K++PL+LSG D++A A+TG+GKTAAF++P+L
Sbjct: 3 FSELQLHPELLSAITELGFASPTPIQEKSIPLLLSGCDLIASAQTGTGKTAAFMLPILHS 62
Query: 85 LNQHVPQG--GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
+ QG V+ALIL+PTR+LA Q + T++L T L + L GG ++ Q + L
Sbjct: 63 MLIGATQGEKSVKALILTPTRELAQQVAEHTEKLVVNTSLNVVCLYGGANIGPQEKRLRA 122
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
D+++ATPGRL+ HL + ++LK+++++VFDEAD + MGF ++ +I+ + RQT
Sbjct: 123 GVDVVVATPGRLLDHLIK-GTLTLKNIQHLVFDEADRMLDMGFMGEIKRIMRTMPLKRQT 181
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
LLFSAT+ A+ K L DP V ++ + + F+++ ++ K + ++I ++
Sbjct: 182 LLFSATVDDAVLSQVKPWLNDPKRVGVESQNSTASTVTQTFYSVDEDRKRELIAHLIGKN 241
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
+ Q L+F TK+ + ++GL+ + +GD Q AR +S+F++ + L+
Sbjct: 242 --NWHQVLVFTRTKNSADSYAKELNKDGLKTAAIHGDKSQGARDKALSQFKSGEIRVLVA 299
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
TDVAARGIDI L+ V N + P + +VHR+GR+ RAG+ G A S V+ ++ L ++
Sbjct: 300 TDVAARGIDIDSLNYVCNAELPYVAEDYVHRIGRSGRAGQNGQAISLVSIDEQWLLEEIE 359
Query: 383 LFLSKPIRAAP 393
+FL + R AP
Sbjct: 360 IFLDE--RFAP 368
>gi|194224511|ref|XP_001501169.2| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Equus
caballus]
Length = 724
Score = 252 bits (644), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 158/462 (34%), Positives = 250/462 (54%), Gaps = 23/462 (4%)
Query: 14 EKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGK 73
E + +S F+ +NLS + +AI G+K PTPIQ+ +P+ L G D+ A A TG+GK
Sbjct: 227 EDASQYDESLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGK 286
Query: 74 TAAFLVPMLQRLNQHVPQGGV-RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
TAAF +P+L+RL Q V R L+L PTR+L +Q TK+L ++ + L VGG
Sbjct: 287 TAAFALPVLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLD 346
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
++SQ L PDI+IATPGRL+ HL L S+E ++ DEAD + F EQ+ +I
Sbjct: 347 VKSQEAALRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEI 406
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR--QEE 250
+ S +RQT+LFSAT+ + + A L++P + ++ +T ++P L+ F +R +E
Sbjct: 407 IRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREG 466
Query: 251 KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVS 310
A++ + +D ++F TK +++L GL+ +G++ Q R +
Sbjct: 467 DREAIVAALLTRTFTD-HVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALR 525
Query: 311 RFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFV 370
RF+ + L+ TDVAARG+DI + VIN+ P K +VHRVGR ARAGR G + S V
Sbjct: 526 RFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLV 585
Query: 371 TSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDL 430
E+ L ++ P++A ++V+L + K+++ +Y V+ L
Sbjct: 586 GEEERKMLKEIVKTAKAPVKARILPQDVILKFRDKIEKMEK------DVYA-----VLQL 634
Query: 431 VSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIR 472
++ +E+ S A +N+ A RL K K P+ E R
Sbjct: 635 EAEE-KEMQQSEAQINT-------AKRLLEKGKEGPNHEPER 668
>gi|440902879|gb|ELR53614.1| Putative ATP-dependent RNA helicase DDX27, partial [Bos grunniens
mutus]
Length = 741
Score = 252 bits (644), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 156/452 (34%), Positives = 246/452 (54%), Gaps = 23/452 (5%)
Query: 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQ 83
F+ +NLS + +AI G+K PTPIQ+ +P+ L G D+ A A TG+GKTAAF +P+L+
Sbjct: 158 SFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLE 217
Query: 84 RLNQHVPQGGV-RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
RL Q V R L+L PTR+L +Q TK+L ++ + L VGG ++SQ L
Sbjct: 218 RLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAALRA 277
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
PDI+IATPGRL+ HL L S+E ++ DEAD + F EQ+ +I+ S +RQT
Sbjct: 278 APDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQT 337
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR--QEEKHAALLYMIR 260
+LFSAT+ + + A L++P + ++ +T ++P L+ F +R +E A++ +
Sbjct: 338 MLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALL 397
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
+D ++F TK +++L GL+ +G++ Q R + RF+ + L
Sbjct: 398 MRTFTD-HVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDIL 456
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLD 380
+ TDVAARG+DI + VIN+ P K +VHRVGR ARAGR G + S V E+ L +
Sbjct: 457 VATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKE 516
Query: 381 LHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIID 440
+ P++A ++V+L + K+++ +Y V+ L ++ +E+
Sbjct: 517 IVKAAKAPVKARILPQDVILKFRDKIEKMEK------DVYA-----VLQLEAEE-KEMQK 564
Query: 441 SSADLNSLQRTCTNAFRLYSKTKPLPSKESIR 472
S A +N+ Q RL K K P+ E R
Sbjct: 565 SEAQINTAQ-------RLLEKGKEAPNPEPER 589
>gi|386314915|ref|YP_006011080.1| DEAD/DEAH box helicase [Shewanella putrefaciens 200]
gi|319427540|gb|ADV55614.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
Length = 539
Score = 252 bits (644), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 210/365 (57%), Gaps = 5/365 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F SL LS + +A+ +GY P+PIQ + +P +L G DV+A A+TG+GKTA F +P+L+
Sbjct: 3 FTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGQDVMAAAQTGTGKTAGFTLPLLEL 62
Query: 85 LN--QHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
L+ Q G VR L+L+PTR+LA Q + + G+Y LR +++ GG + Q +L
Sbjct: 63 LSKGQKAQAGQVRTLVLTPTRELAAQVAESVETYGKYLPLRSAVVFGGVPINPQIAKLRH 122
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
D+++ATPGRLM L + + +E +V DEAD + MGF + KIL L + RQ
Sbjct: 123 GVDVLVATPGRLMD-LYNQKAVKFNQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQN 181
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
L+FSAT + E AK + +P + + + +K + + +K A L +I++H
Sbjct: 182 LMFSATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKGQKSALLTQLIKQH 241
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
QQ L+F TKH L E G++ + +G+ Q AR ++ F+ + L+
Sbjct: 242 --DWQQVLVFSRTKHGANRLAKNLEEAGIKAAAIHGNKSQTARTKALADFKNGQVRVLVA 299
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
TD+AARG+DI L V+N+D P P+ +VHR+GR RAG +G A S V+SE++ L D+
Sbjct: 300 TDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSSEEIKLLNDIE 359
Query: 383 LFLSK 387
+++
Sbjct: 360 RLINR 364
>gi|430808618|ref|ZP_19435733.1| RNA helicase, partial [Cupriavidus sp. HMR-1]
gi|429498999|gb|EKZ97465.1| RNA helicase, partial [Cupriavidus sp. HMR-1]
Length = 423
Score = 252 bits (644), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 144/387 (37%), Positives = 213/387 (55%), Gaps = 20/387 (5%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L LS + RA+ +GY PTPIQ + +P IL G D++A A+TG+GKTA F +PMLQ
Sbjct: 3 FSELGLSDKLVRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPMLQL 62
Query: 85 LNQ--------HVPQGG---VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSM 133
L++ + P+G VRAL+L+PTR+LA Q + + G+Y LR ++ GG +
Sbjct: 63 LSESAARANGGNAPRGARPNVRALVLTPTRELAAQVEESVRNYGKYLKLRSMVMFGGVGI 122
Query: 134 ESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKIL 193
Q E L + DI++ATPGRL+ H+++ + L VE +V DEAD + MGF + K+L
Sbjct: 123 NPQIEALRRGVDIVVATPGRLLDHVAQ-RTIDLSHVELLVLDEADRMLDMGFIHDIRKVL 181
Query: 194 GQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHA 253
L RQ LLFSAT + A L +P + + + + F + +E K
Sbjct: 182 NVLPPKRQNLLFSATFSDEIRALADRLLDNPASIEVARRNTTAETVAQRVFPVDRERKRE 241
Query: 254 ALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFR 313
L +++R+H Q L+F TKH L ++GL +G+ Q AR ++ F+
Sbjct: 242 LLAHLVRQH--DWHQVLVFTRTKHGANRLAEQLTKDGLSALAIHGNKSQSARTRALTEFK 299
Query: 314 ARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSE 373
A L+ TD+AARGIDI L +V+N+D P P+ +VHR+GR RAG G A S V +
Sbjct: 300 AGTLRLLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAEGEAISLVCVD 359
Query: 374 DMAYLLDLHLFLSKPIRAAPSEEEVLL 400
+ L D+ + + I E+VLL
Sbjct: 360 EHGLLRDIERLIKRQI------EQVLL 380
>gi|168010159|ref|XP_001757772.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691048|gb|EDQ77412.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 753
Score = 252 bits (644), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 139/360 (38%), Positives = 208/360 (57%), Gaps = 10/360 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F LNLS + RA + GY+ PTPIQ +PL L+G D+ A TGSGKT AF +PML+R
Sbjct: 130 FGELNLSRPLIRACETLGYREPTPIQAACIPLALTGRDICGSAVTGSGKTGAFALPMLER 189
Query: 85 L---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L + +P +R LIL+PTR+LA+Q ++L ++TD+ +++VGG S + Q L
Sbjct: 190 LLYRPRRIP--AIRCLILTPTRELAVQVHSMVQKLAQFTDVTSAIVVGGLSSKVQEVALR 247
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
PDI++ATPGR++ HL + L+ + +V DEAD L +GF +++H+++ Q + RQ
Sbjct: 248 ARPDIVVATPGRMLDHLQNSLSVGLEDLSILVLDEADRLLELGFTQEVHELVRQCPKRRQ 307
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR---QEEKHAALLYM 258
T+LFSAT+ ++ L P + D TK L +R + +K A LL +
Sbjct: 308 TMLFSATMTEEVSNLINLSLNSPVRLSADPSTKRPVSLSEEVVKIRPALENDKEAVLLAL 367
Query: 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
++ +IF K L +LF GL+ + +G++ Q R + FR ++
Sbjct: 368 CTRTFK--EKVIIFSGMKVEAHRLKILFGLAGLKAAELHGNLTQAMRLDALESFRKQEVD 425
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
FLI TDVAARG+DI ++ VIN+ P ++VHRVGR ARAGR G A +FVT + + L
Sbjct: 426 FLIATDVAARGLDIVGVETVINFHCPSDITVYVHRVGRTARAGRKGCAVTFVTERERSLL 485
>gi|386002133|ref|YP_005920432.1| ATP-dependent RNA helicase [Methanosaeta harundinacea 6Ac]
gi|357210189|gb|AET64809.1| ATP-dependent RNA helicase, putative [Methanosaeta harundinacea
6Ac]
Length = 418
Score = 252 bits (643), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 136/372 (36%), Positives = 229/372 (61%), Gaps = 12/372 (3%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE L+++ + RA+ ++GY PTPIQ + +P +L G D++ +A+TG+GKTAAF++P+LQR
Sbjct: 3 FEDLDIAEPLQRALTKEGYANPTPIQAEAIPHLLRGEDLLGIAQTGTGKTAAFVLPVLQR 62
Query: 85 LNQH----VPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
+++ VP G RAL+L+PTR+LA Q + G++ + + GG S E Q + L
Sbjct: 63 ISEERRRTVP-GAPRALVLAPTRELAAQIDESFGTYGQFLQFSHAAVFGGVSQEPQVKAL 121
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
++ + ++ATPGRL+ L E + LK +E+ V DEAD + MGFA+ +H+I+ L + R
Sbjct: 122 SRGVEALVATPGRLLD-LMEQGHIDLKGIEFFVLDEADRMLDMGFAKDVHRIVSALPKKR 180
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISP--DLKLAFFTLRQEEKHAALLYM 258
+L F+AT+ + E A L+DP VR++V + +P ++ F + Q+EK+ L+ +
Sbjct: 181 HSLFFAATMSREIGELAGRLLKDP--VRVEVAPQATPVESIEQRIFFVDQKEKNPLLIGL 238
Query: 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
+++ ++ L+F TK + + + G+ +GD Q+ R + F+A +
Sbjct: 239 LQQKFL--KRVLVFTRTKRRADRVAKVLTRSGIRADAIHGDRTQNQRLAALRGFKAGRLQ 296
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
L+ TD+AARGID+ + +VIN+D P +P+ +VHR+GR RAGR GTA+SF ++E+ ++L
Sbjct: 297 VLVATDIAARGIDVEDISHVINYDLPNEPESYVHRIGRTGRAGRAGTAYSFCSAEERSFL 356
Query: 379 LDLHLFLSKPIR 390
D+ IR
Sbjct: 357 RDIERLTRTKIR 368
>gi|354548378|emb|CCE45114.1| hypothetical protein CPAR2_701180 [Candida parapsilosis]
Length = 478
Score = 252 bits (643), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 150/401 (37%), Positives = 223/401 (55%), Gaps = 16/401 (3%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K F LNL P++ AI++ + PTPIQ + +P L G D++ +A TGSGKTAAF +P
Sbjct: 66 KFNTFAELNLVPDLLEAIQQMKFTKPTPIQSEAIPHALEGKDIIGLAVTGSGKTAAFAIP 125
Query: 81 MLQRL-NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139
+LQ L + P G L+L+PTR+LA Q LG LR +VGG M Q +
Sbjct: 126 ILQALWHAQTPYFG---LVLAPTRELAFQIKDTFDALGTTMGLRSVCIVGGMDMMDQARD 182
Query: 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSEN 199
L + P I++ATPGR+M HL + SLK+++Y+V DEAD L M F L KIL +
Sbjct: 183 LMRKPHIVVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIPPK 242
Query: 200 RQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTK--ISPDLKLAFFTLRQEEKHAALLY 257
R T LFSAT+ + + + +A L +P VR+ V TK + +L + + K+ L++
Sbjct: 243 RTTYLFSATMTNKIEKLQRASLHNP--VRVAVSTKYQTADNLVQSMMLVNDGYKNTILIH 300
Query: 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKT 317
++ E + + ++F T H + +L R G +G + Q R +++F++ K
Sbjct: 301 LLNEFMG--KSIIVFTRTVAHAQRTALLARILGFNAVPLHGQLSQAQRLGSLNKFKSGKA 358
Query: 318 MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAY 377
L+ TDVAARG+DIP +D VIN+D P K ++HRVGR ARAGR+G + S +T D+
Sbjct: 359 NILVATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEM 418
Query: 378 LLDLHLFLSK--PIRAAPSEEEVLLDMDGVMSKIDQAIANG 416
L + L K P PS+E +D + +D+A A
Sbjct: 419 YLRIENALGKKLPKEDKPSKEV----LDALHIHVDKATAEA 455
>gi|336314302|ref|ZP_08569221.1| DNA/RNA helicase, superfamily II [Rheinheimera sp. A13L]
gi|335881315|gb|EGM79195.1| DNA/RNA helicase, superfamily II [Rheinheimera sp. A13L]
Length = 420
Score = 252 bits (643), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 135/357 (37%), Positives = 208/357 (58%), Gaps = 6/357 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F +L L P + A+ +GY PTPIQ++T+P+IL G DV+A A+TG+GKTAAF +P+LQ
Sbjct: 3 FATLGLDPRILSAVTNQGYHTPTPIQQQTIPVILEGKDVLAGAQTGTGKTAAFTLPVLQL 62
Query: 85 LNQH---VPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L+++ V VR L+L+PTR+LA Q K G L+ ++ GG S+ Q+++ +
Sbjct: 63 LSKNTTKVSHLQVRCLVLTPTRELAQQVADSVKAYGADLPLKYAVFYGGVSINPQYDQAS 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ DI++ATPGRL+ HL + +SL ++ +V DEAD + MGF + +I+ +L + RQ
Sbjct: 123 RGLDILVATPGRLLDHLHQ-GTVSLSELQILVLDEADRMLDMGFIHDIKRIMARLPKERQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
TL FSAT + E A L+ P L+ + + ++ + + + K L Y+I
Sbjct: 182 TLFFSATFAKEIKELADTLLKSPVLIEVAKPNSTADKIEQLAYRVDSQRKREMLSYLIGS 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+Q LIF TKH + L R +G+E +GD Q AR + F+ + L+
Sbjct: 242 R--QWKQVLIFSRTKHGADRLAKQLRLDGIEAGAIHGDKSQGARTKALDDFKNNRLSVLV 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
TD+AARG+DI L V+N+D P + +VHR+GR RAG +G A S +T +D+ L
Sbjct: 300 ATDIAARGLDIEELPIVVNYDLPQVAEDYVHRIGRTGRAGNSGLALSLITPDDLVML 356
>gi|332532553|ref|ZP_08408430.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505]
gi|359440332|ref|ZP_09230253.1| ATP-dependent RNA helicase rhlE [Pseudoalteromonas sp. BSi20429]
gi|392533028|ref|ZP_10280165.1| ATP-dependent RNA helicase [Pseudoalteromonas arctica A 37-1-2]
gi|332037974|gb|EGI74422.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505]
gi|358037869|dbj|GAA66502.1| ATP-dependent RNA helicase rhlE [Pseudoalteromonas sp. BSi20429]
Length = 434
Score = 252 bits (643), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 141/388 (36%), Positives = 219/388 (56%), Gaps = 11/388 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+S + +P + +A+ Y TPIQR +P + G DV+A A+TG+GKTAAF +P++Q+
Sbjct: 3 FKSFSFAPEIIQALDELNYHTLTPIQRAAIPAVRKGKDVLASAQTGTGKTAAFALPIIQK 62
Query: 85 L--NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
L ++ AL+L+PTR+LA Q ++ ++T L++ L GG S Q L +
Sbjct: 63 LVESELSTTNAPHALVLAPTRELAEQIANNFRDFAKHTSLKVVSLFGGVSTAGQANALKE 122
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
DI++ATPGRL H+ + ++SL SV+++V DEAD + MGF E + ++ +E RQ
Sbjct: 123 GVDIVVATPGRLFDHI-RLGNLSLASVKHLVLDEADRMLDMGFIEDMQNVIKSCAEERQI 181
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
LLFSAT P+A+ +FA L+ +VR+D + ++ + + + K L +I +
Sbjct: 182 LLFSATFPAAIKQFASKVLKQAEIVRVDQTNSTASTVEHVVYPVEERRKQELLSELIGK- 240
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
+ QQ L+FV+ K + L +G+ VC+GD Q R+ + F+ K L+
Sbjct: 241 -KNWQQVLVFVNMKETADELVKELNLDGIPAGVCHGDKSQGNRRRALREFKEGKVRVLVA 299
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
T+VAARGIDI L VIN D P + +VHR+GR RAGR G A SFV+ E+ L ++
Sbjct: 300 TEVAARGIDIDGLPRVINIDLPWLAEDYVHRIGRTGRAGRQGQAISFVSREEENTLFEIE 359
Query: 383 LFLSKPIRAA------PSEEEVLLDMDG 404
+ + I+ S EVL+D G
Sbjct: 360 TLIGQKIKRVYLEGYEVSNREVLIDKIG 387
>gi|50543676|ref|XP_500004.1| YALI0A12133p [Yarrowia lipolytica]
gi|74660195|sp|Q6CH58.1|RRP3_YARLI RecName: Full=ATP-dependent rRNA helicase RRP3
gi|49645869|emb|CAG83933.1| YALI0A12133p [Yarrowia lipolytica CLIB122]
Length = 480
Score = 252 bits (643), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 145/399 (36%), Positives = 230/399 (57%), Gaps = 17/399 (4%)
Query: 6 SKAELKRREKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVA 65
+ E+ E+Q K F+ L + ++ + + PTPIQ +++P L G D++
Sbjct: 52 TSVEVDESEEQTKT-----FKDLGVIDSICETCEELKFTKPTPIQAQSIPYALEGRDIIG 106
Query: 66 MARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRIS 125
+A+TGSGKTAAF +P+LQ L ++ PQ + ++L+PTR+LA Q + + LG LR +
Sbjct: 107 LAQTGSGKTAAFAIPVLQSLYEN-PQP-LYCVVLAPTRELAYQISETFEALGSAMGLRTA 164
Query: 126 LLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGF 185
++VGG +M +Q L++ P +I+ATPGRL+ HL + SL++++++V DEAD L M F
Sbjct: 165 VVVGGMNMMTQAVALSKKPHVIVATPGRLVDHLENTKGFSLRTLKFLVMDEADRLLDMEF 224
Query: 186 AEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKL---- 241
L KIL + R T LFSAT+ S + + +A L DP VR+ V TK L
Sbjct: 225 GPSLDKILKVIPRQRNTYLFSATMTSKVEKLQRASLVDP--VRVAVSTKYQTADNLLQYM 282
Query: 242 AFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMD 301
F + ++ H L+Y++ E+ + +IF TK + +++L R G +GD+
Sbjct: 283 VFCPFKHKDTH--LVYLVSEN--AGNSMIIFARTKSDTQRISLLLRNLGYGAIPLHGDLS 338
Query: 302 QDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAG 361
Q AR +++F++ LI TDVA+RG+DIP +D VIN+D P K ++HRVGR ARAG
Sbjct: 339 QTARLGALNKFKSGSRNILIATDVASRGLDIPAVDLVINYDIPSDSKSYIHRVGRTARAG 398
Query: 362 RTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLL 400
R G + + V+ D+ L + L K + + P E E ++
Sbjct: 399 RAGKSVALVSQYDLELYLRIEGALGKKLDSYPLESEAVM 437
>gi|295085349|emb|CBK66872.1| Superfamily II DNA and RNA helicases [Bacteroides xylanisolvens
XB1A]
Length = 374
Score = 252 bits (643), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 131/371 (35%), Positives = 222/371 (59%), Gaps = 6/371 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ LN++ + +AI KGY VPTPIQ K +P L+ D++ A+TG+GKTA+F +P++Q
Sbjct: 3 FKELNITEPILKAIGEKGYTVPTPIQEKAIPPALAKRDILGCAQTGTGKTASFAIPIIQH 62
Query: 85 LN---QHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L + + G++ALIL+PTR+LALQ + + ++T +R ++ GG + Q + L
Sbjct: 63 LQLDKEAARRQGIKALILTPTRELALQISECIDDYSKHTRIRHGVIFGGVNQRPQVDLLR 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ DI++ATPGRL+ +S+ + L +++Y V DEAD + MGF + +IL +L + +Q
Sbjct: 123 KGIDILVATPGRLLDLMSQ-GHIHLDTIQYFVLDEADRMLDMGFIHDIKRILPKLPKEKQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
TL FSAT+P ++ K+ L++P + + + +K + + ++EK L+ ++ +
Sbjct: 182 TLFFSATMPDSIISLTKSLLKNPVKIYITPKSSTVDSIKQVVYFVEKKEKSQLLISILSK 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ DQ LIF TKH+ + + + + G+ +G+ Q AR+ + F++ KT ++
Sbjct: 242 --AEDQSVLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRVMV 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TD+A+RGIDI L VIN+D P P+ +VHR+GR RAG GTA +F + E+ + D+
Sbjct: 300 ATDIASRGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNMGTALTFCSQEERKLVNDI 359
Query: 382 HLFLSKPIRAA 392
K + A
Sbjct: 360 QKLTGKKLNKA 370
>gi|317472067|ref|ZP_07931399.1| DEAD/DEAH box helicase [Anaerostipes sp. 3_2_56FAA]
gi|316900471|gb|EFV22453.1| DEAD/DEAH box helicase [Anaerostipes sp. 3_2_56FAA]
Length = 528
Score = 252 bits (643), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 161/545 (29%), Positives = 281/545 (51%), Gaps = 33/545 (6%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ LN++ + +A+K G++ +PIQ +P++L G D+V A+TG+GKTAAF +P+L++
Sbjct: 6 FDELNINDKILKAVKEMGFEAASPIQGAAIPVVLEGRDIVGQAQTGTGKTAAFGIPLLEK 65
Query: 85 LNQHV--PQGGVRALILSPTRDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEELA 141
++ V PQ A+IL PTR+LA+Q ++L ++ ++ + GG ++ +Q L
Sbjct: 66 MDTKVKRPQ----AMILCPTRELAIQVADEIRKLAKFMHGAKVLPIYGGQNITNQIRSLK 121
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+II+ TPGR+M H+ + L+ ++ VV DEAD + MGF E + IL ++ E RQ
Sbjct: 122 TGANIIVGTPGRIMDHMRR-HTLKLEDLKMVVLDEADEMLNMGFREDIESILKEVPEERQ 180
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
TLLFSAT+P A+ + K +D L+++ P+++ ++ +R ++K L ++
Sbjct: 181 TLLFSATMPKAILDITKKYQKDSKLIKVVRKELTVPNIEQYYYEVRPKQKVEVLCRLLDM 240
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
H S + +++F +TK V+ + + G +GD+ Q R + FR + L+
Sbjct: 241 H--SPKLSIVFCNTKRMVDEVTGELKGRGYFAEGIHGDLKQSQRDRVMKSFRGGRVDILV 298
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TDVAARGID+ +D V N+D P + +VHR+GR RAGRTG AF+FV +++ L D+
Sbjct: 299 ATDVAARGIDVDDVDAVFNYDLPQDDEFYVHRIGRTGRAGRTGNAFTFVAGKEIYKLRDV 358
Query: 382 HLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDS 441
+ I+A P + ++ V + +A + E I G + +D D + E I+
Sbjct: 359 QRYCKTKIKARP-----IPSLNDVQAT--RAEKSLEEITGLIEENNLDKYVDMLDEFINE 411
Query: 442 SADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMFKNVLEGGELMALAFS 501
+ D +L+ + S+ + + + G G+ +F N+
Sbjct: 412 T-DFTALEIAAAFLKKQISENEEQEANQGEDFGDTGAEAGMVRLFINI------------ 458
Query: 502 ERLKAFRPKQTILEAEGEAARSKHLQGP---SSQWVDVMKKKRAVHEKIINLVHQQRSSK 558
+ K RP + GE++ S L G Q+ V K + + + H + K
Sbjct: 459 GKKKGVRPGDILGAIAGESSISGDLVGAIDVHDQYTFVEVPKEVAKDVMYGMRHAKIKGK 518
Query: 559 SMEKE 563
S+ E
Sbjct: 519 SVSME 523
>gi|254578822|ref|XP_002495397.1| ZYRO0B10318p [Zygosaccharomyces rouxii]
gi|238938287|emb|CAR26464.1| ZYRO0B10318p [Zygosaccharomyces rouxii]
Length = 750
Score = 252 bits (643), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 136/361 (37%), Positives = 219/361 (60%), Gaps = 5/361 (1%)
Query: 15 KQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKT 74
++ KK F SL+LS V +A+ GY P+PIQ T+P+ L G D++A A TGSGKT
Sbjct: 229 EEAKKKVFNNFNSLSLSRPVLKALGDLGYATPSPIQGATIPIALLGKDIIAGAVTGSGKT 288
Query: 75 AAFLVPMLQRL-NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD-LRISLLVGGDS 132
AAF++P+++RL + R ++L+PTR+LA+Q K+LG+Y + L + VGG +
Sbjct: 289 AAFMIPIIERLIYKPAKVASTRVIVLAPTRELAIQVADVGKKLGKYVNGLTFGIAVGGLN 348
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
+ Q + L PDI+IATPGR + H+ ++ SVE +V DEAD + GF +++++I
Sbjct: 349 LRQQEQILKTRPDIVIATPGRFIDHIRNSSSFNVDSVEVLVIDEADRMLEEGFQDEINEI 408
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE-- 250
+ L RQT+LFSAT+ S + + L+ P V D + L+ F +R+ +
Sbjct: 409 MHLLPSKRQTMLFSATMNSKIKQLVSLSLKRPVRVMTDPPQQAVSKLQQEFVRIRKRDHL 468
Query: 251 KHAALLYMIREHISSDQQTLI-FVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHV 309
K + L Y+I++ + Q+ ++ FVS K V L ++ G+ + +G ++Q+ R +
Sbjct: 469 KPSTLFYLIKKLDGAAQKRMVVFVSKKEMVHRLRIILGLLGMAVAELHGSLNQEQRLQSI 528
Query: 310 SRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSF 369
++F++ + LI TD+A+RG+DIP ++ VIN+D P +I++HRVGR ARAGR G + SF
Sbjct: 529 NKFKSLEVPVLICTDLASRGLDIPKIEVVINYDMPKSFEIYLHRVGRTARAGREGRSVSF 588
Query: 370 V 370
V
Sbjct: 589 V 589
>gi|298482320|ref|ZP_07000507.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. D22]
gi|298271607|gb|EFI13181.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. D22]
Length = 374
Score = 252 bits (643), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 130/371 (35%), Positives = 223/371 (60%), Gaps = 6/371 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ LN++ + +AI+ KGY VPTPIQ K +P L+ D++ A+TG+GKTA+F +P++Q
Sbjct: 3 FKELNITEPILKAIEEKGYTVPTPIQEKAIPPALAKRDILGCAQTGTGKTASFAIPIIQH 62
Query: 85 LN---QHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L + + G++ALIL+PTR+LALQ + + ++T +R ++ GG + Q + L
Sbjct: 63 LQLDKEAARRQGIKALILTPTRELALQISECIDDYSKHTRIRHGVIFGGVNQRPQVDLLR 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ DI++ATPGRL+ +++ + L +++Y V DEAD + MGF + +IL +L + +Q
Sbjct: 123 KGIDILVATPGRLLDLMTQ-GHIHLDTIQYFVLDEADRMLDMGFIHDIKRILPKLPKEKQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
TL FSAT+P ++ K+ L++P + + + +K + + ++EK L+ ++ +
Sbjct: 182 TLFFSATMPDSIISLTKSLLKNPVKIYITPKSSTVDSIKQVVYFVEKKEKSQLLISILSK 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ DQ LIF TKH+ + + + + G+ +G+ Q AR+ + F++ KT ++
Sbjct: 242 --AEDQSVLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRVMV 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TD+A+RGIDI L VIN+D P P+ +VHR+GR RAG GTA +F + E+ + D+
Sbjct: 300 ATDIASRGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNMGTALTFCSQEERKLVNDI 359
Query: 382 HLFLSKPIRAA 392
K + A
Sbjct: 360 QKLTGKKLNKA 370
>gi|383113927|ref|ZP_09934694.1| hypothetical protein BSGG_4721 [Bacteroides sp. D2]
gi|313697186|gb|EFS34021.1| hypothetical protein BSGG_4721 [Bacteroides sp. D2]
Length = 374
Score = 252 bits (643), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 134/371 (36%), Positives = 218/371 (58%), Gaps = 6/371 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ LN++ + +AI+ KGY VPTPIQ + +P L+ D++ A+TG+GKTA+F +P++Q
Sbjct: 3 FKELNITEPILKAIEEKGYAVPTPIQGEAIPAALAKRDILGCAQTGTGKTASFAIPIIQH 62
Query: 85 LNQHVPQG---GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L + G++ALIL+ TR+LALQ + + +YT +R ++ GG + Q + L
Sbjct: 63 LQMNKEAAKCRGIKALILTSTRELALQISECINDYAKYTQVRHGVIFGGVNQRPQVDMLH 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ DI++ATPGRL+ +++ + L ++Y V DEAD + MGF + +IL +L + +Q
Sbjct: 123 KGIDILVATPGRLLDLMNQ-GHIHLDKIQYFVLDEADRMLDMGFIHDIKRILPKLPKEKQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
TL FSAT+P + + L++P VR+ + K S + E+K +LL +
Sbjct: 182 TLFFSATMPDTIISLTNSLLKNP--VRISITPKSSTVDAIEQMVYFVEKKEKSLLLVSIL 239
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
S DQ L+F TKH+ + + + + G+ +G+ Q AR++ + F++ KT ++
Sbjct: 240 QKSEDQSVLVFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQLALGNFKSGKTRVMV 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TD+AARGIDI L VIN+D P P+ +VHR+GR RAG TGTA +F + E+ + D+
Sbjct: 300 ATDIAARGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNTGTALTFCSQEERKLVNDI 359
Query: 382 HLFLSKPIRAA 392
K + A
Sbjct: 360 QKLTGKKLNKA 370
>gi|21673860|ref|NP_661925.1| ATP-dependent RNA helicase DeaD [Chlorobium tepidum TLS]
gi|21646994|gb|AAM72267.1| ATP-dependent RNA helicase DeaD [Chlorobium tepidum TLS]
Length = 414
Score = 252 bits (643), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 133/368 (36%), Positives = 220/368 (59%), Gaps = 6/368 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F +L + ++ +A+ +GY PTPIQ++ +P+IL G D++A A+TG+GKTAAF +P+LQR
Sbjct: 3 FSALGIIDHLRKALAEEGYNSPTPIQKEAIPVILEGNDLLACAQTGTGKTAAFALPVLQR 62
Query: 85 LNQ---HVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L+Q H + +R L+L+PTR+LA+Q + GR+T L +++ GG + Q L
Sbjct: 63 LHQSRMHGEKRKIRCLVLTPTRELAIQIGESFTAYGRHTGLINTVIFGGVNQNPQTARLV 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ DI++ATPGRL+ + + + L+ +EY V DEAD + MGF + ++L L + RQ
Sbjct: 123 RGVDILVATPGRLLDLIGQ-GHLHLRDIEYFVLDEADRMLDMGFIHDIRRVLAVLPKKRQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
+L FSAT+P + + + A L +P V + + + + +E K++ L ++++E
Sbjct: 182 SLFFSATMPPEIIKLSAAILHNPKEVMVTPVSSTVEIINQQILFVDRENKNSLLAHLLKE 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ + L+F TKH + + + +G+ Q+AR+ + F+ R+T L+
Sbjct: 242 --RNIESALVFTRTKHGADKVARFLAHHDITAEAIHGNKSQNARQRALGNFKTRQTRVLV 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TD+AARGIDI L+ VIN D P P+ +VHR+GR RAG G A+SF +E+ AYL D+
Sbjct: 300 ATDIAARGIDIDELEYVINIDLPNIPETYVHRIGRTGRAGNRGAAYSFCNAEEKAYLRDI 359
Query: 382 HLFLSKPI 389
+++ I
Sbjct: 360 EKLIARKI 367
>gi|156052799|ref|XP_001592326.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980]
gi|160358660|sp|A7EML8.1|RRP3_SCLS1 RecName: Full=ATP-dependent rRNA helicase rrp3
gi|154704345|gb|EDO04084.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980
UF-70]
Length = 482
Score = 252 bits (643), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 142/364 (39%), Positives = 211/364 (57%), Gaps = 5/364 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L + ++ A GYK PTPIQR+++PL L G D++ +A TGSGKTAAF +P+LQ
Sbjct: 58 FKDLGIVDSLCEACDTLGYKAPTPIQRESIPLALQGRDLIGLAETGSGKTAAFALPILQS 117
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L PQ + L+L+PTR+LA Q + + LG ++ +++VGG M Q L + P
Sbjct: 118 LLDK-PQP-LFGLVLAPTRELAYQISQSFEALGSIIRVKCAVIVGGMDMVPQAIALGKKP 175
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
II+ATPGRL+ HL + SL+S++Y+V DEAD L + F L KIL L R+T L
Sbjct: 176 HIIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKVLPRERRTYL 235
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVD-TKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
FSAT+ S + +A L+DP V + + + L + + K L+Y++ E
Sbjct: 236 FSATISSKVESLQRASLKDPLRVSISSNKYQTVSTLIQNYIFIPLVHKDTYLIYLLNEF- 294
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+ Q +IF T + + + +L R G +G + Q +R +++FRA L+ T
Sbjct: 295 -AGQSAIIFTRTVNETQRIAILLRTLGFGAIPLHGQLSQSSRLGALNKFRAGSREILVAT 353
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHL 383
DVAARG+DIP +D V+N+D P K ++HRVGR ARAG++G A SFVT D+ + +
Sbjct: 354 DVAARGLDIPSVDVVLNYDMPQDSKTYIHRVGRTARAGKSGHAISFVTQYDVEIWMRIEA 413
Query: 384 FLSK 387
L K
Sbjct: 414 ALGK 417
>gi|54302687|ref|YP_132680.1| ATP-dependent RNA helicase [Photobacterium profundum SS9]
gi|46916111|emb|CAG22880.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9]
Length = 431
Score = 252 bits (643), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 135/368 (36%), Positives = 221/368 (60%), Gaps = 6/368 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F S N SP + RA+ GY+ TPIQ + +P G+D++A A+TG+GKTAAF +P++Q+
Sbjct: 3 FASQNFSPEIVRALTECGYEKLTPIQAQAIPHARRGSDILANAQTGTGKTAAFSLPIIQQ 62
Query: 85 LNQHVPQGG---VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
+ + G VRALIL+PTR+LA Q + E +YTDL+ + + GG M SQ L
Sbjct: 63 ILEKPKSRGRFNVRALILAPTRELAAQIAQNIAEYTKYTDLKTAAIYGGTKMSSQERTLE 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ DI++ATPGRL+ H+ +++++SL ++E++VFDEAD + MGF + K++G+++ N Q
Sbjct: 123 KGVDILVATPGRLIEHV-DLKNVSLANIEFLVFDEADRMLDMGFITDMRKVMGEVNTNPQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
++FSAT + A LR P + +D + + + + + QE K L +I +
Sbjct: 182 IMMFSATSSKQMNALASDILRKPKRIMVDRENTTADTVSHVVYPVDQERKRELLSELIGK 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ +Q L+FV+ K L +++G++ +C+GD Q AR+ + F+ K ++
Sbjct: 242 --KNWKQVLVFVNYKETANELVKELKKDGIKAVLCHGDKAQSARRRALDEFKEGKARVMV 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
T+VAARG+DI L +V+N+D P + +VHR+GR RAG G A SFV+ E+ L+ +
Sbjct: 300 ATEVAARGLDIQALPHVVNFDMPFLAEDYVHRIGRTGRAGLKGHAISFVSKEEELTLVQV 359
Query: 382 HLFLSKPI 389
+ + I
Sbjct: 360 EQLIGQRI 367
>gi|405122110|gb|AFR96877.1| ATP-dependent rRNA helicase RRP3 [Cryptococcus neoformans var.
grubii H99]
Length = 484
Score = 252 bits (643), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 147/356 (41%), Positives = 213/356 (59%), Gaps = 8/356 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L +SP + RA G+K P+ IQ + +P L G D++ +A+TGSGKTAAF +P+LQ
Sbjct: 40 FADLGISPELCRACASMGFKKPSDIQAEAIPHALEGKDIIGLAQTGSGKTAAFSLPILQT 99
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L ++ PQ AL+L+PTR+LA Q + LG +R ++LVGG M SQ L++ P
Sbjct: 100 LWEN-PQP-FFALVLAPTRELAYQISQQVTSLGSGIGVRTAVLVGGMDMMSQSIALSKRP 157
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
+I+ATPGRLM HL + SLKS++Y+V DEAD L + F + K+L + + R T L
Sbjct: 158 HVIVATPGRLMDHLENTKGFSLKSLKYLVMDEADRLLDLDFGPIIDKVLKVIPKERNTYL 217
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKIS--PDLKLAFFTLRQEEKHAALLYMIREH 262
FSAT+ + +A+ +A L P VR++V +K S L + L + K A LLY+ E
Sbjct: 218 FSATMTTKVAKLQRASLNKP--VRVEVSSKYSTVSTLLQHYLLLPLKNKDAYLLYLANEL 275
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
SS +IF T + L+++ R G +G M Q R +++F++ L+
Sbjct: 276 SSSSM--IIFTRTVADSQRLSIILRRLGFPAIPLHGQMTQSLRLASLNKFKSGGRSILVA 333
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
TDVA+RG+DIPL+D VIN+D P K +VHRVGR ARAGR+G + + VT D+ L
Sbjct: 334 TDVASRGLDIPLVDLVINYDMPTNSKDYVHRVGRTARAGRSGKSITLVTQYDVEIL 389
>gi|327272750|ref|XP_003221147.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like isoform 1
[Anolis carolinensis]
Length = 445
Score = 252 bits (643), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 146/396 (36%), Positives = 239/396 (60%), Gaps = 11/396 (2%)
Query: 8 AELKRREKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMA 67
AE+++ E + +KS F+ L ++ + A + G+K PT IQ +++PL L G D++ +A
Sbjct: 3 AEMEQEEVNAEAAKS--FKELGVTEVLCEACDQLGWKTPTKIQVESIPLALQGRDIIGLA 60
Query: 68 RTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLL 127
TGSGKT AF +P+LQ L + PQ AL+L+PTR+LA Q + + LG ++ +++
Sbjct: 61 ETGSGKTGAFALPILQALLE-TPQR-FFALVLTPTRELAFQISEQFEALGSSIGVQTAVI 118
Query: 128 VGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAE 187
VGG M +Q LA+ P +IIATPGRL+ HL + +L++++Y+V DEAD + M F
Sbjct: 119 VGGIDMMAQSLALAKKPHVIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFET 178
Query: 188 QLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLA--FFT 245
++ KIL + +R+T LFSAT+ + + +A L+DP V+ V +K KL +
Sbjct: 179 EVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKDP--VKCAVSSKYQTVEKLQQYYVF 236
Query: 246 LRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDAR 305
+ + K + L+Y++ E + +IF ST ++ + +L R G +G M+Q+ R
Sbjct: 237 IPSKFKDSYLVYILNEL--AGNSFMIFCSTCNNTQRTALLLRNLGFTAIPLHGQMNQNKR 294
Query: 306 KIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGT 365
+++F+A+ L+ TDVA+RG+DIP +D VIN+D P K ++HRVGR ARAGR+G
Sbjct: 295 LGSLNKFKAKARSVLLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGK 354
Query: 366 AFSFVTSEDMAYLLDLHLFLSKPIRAAPSEE-EVLL 400
+ +FVT D+ + + K + A P++E EV++
Sbjct: 355 SITFVTQYDVELFQRIEHLIGKKLPAFPTQEDEVMM 390
>gi|242007312|ref|XP_002424485.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
gi|212507903|gb|EEB11747.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
Length = 669
Score = 252 bits (643), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 138/382 (36%), Positives = 223/382 (58%), Gaps = 9/382 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F +NLS + +AI + PTPIQ +P+ L G D+ A TG+GKTAA+++P+L+R
Sbjct: 157 FYQMNLSRPLMKAIAAMNFSHPTPIQCAAIPVALLGRDICGCAATGTGKTAAYMLPILER 216
Query: 85 LNQHVPQGGV---RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L + PQG + R L+L PTR+L +Q ++ K+L ++T + I L VGG ++ Q L
Sbjct: 217 L-LYKPQGSLSITRVLVLVPTRELGVQVIQVAKQLSKFTTIEIGLAVGGLDVKVQEAFLR 275
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ PDI+IATPGRL+ HL SL S+E +V DEAD + FAEQ+ +I+ Q S RQ
Sbjct: 276 KQPDIVIATPGRLIDHLKNSLGFSLDSIEILVLDEADRMLDEYFAEQMKEIVRQCSRTRQ 335
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTL---RQEEKHAALLYM 258
T+LFSAT+ +A+ + A L +P + +D + ++ +L+ F + R+ +K A L +
Sbjct: 336 TMLFSATMTTAVEDLASVSLSNPVKIFVDSNQSVTNNLRQEFIRIRKGREGDKEAVLAAL 395
Query: 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
+R ++ +IFV+TK L +L ++ +G++ Q R + RF+ +
Sbjct: 396 VRRTFRAN--CIIFVATKSQAHKLRILLGFLNMKAGELHGNLRQPERLDTLKRFKNGELD 453
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
L+ TDVAARG+DI + VIN+D P + ++HRVGR ARAGR+G + S + +
Sbjct: 454 ILVATDVAARGLDISGVKTVINYDLPMTFEHYIHRVGRTARAGRSGISVSLACESERKLV 513
Query: 379 LDLHLFLSKPIRAAPSEEEVLL 400
++ +P+++ ++LL
Sbjct: 514 KEIVKKAERPVKSRIIPPQILL 535
>gi|359454797|ref|ZP_09244066.1| ATP-dependent RNA helicase rhlE [Pseudoalteromonas sp. BSi20495]
gi|358048174|dbj|GAA80315.1| ATP-dependent RNA helicase rhlE [Pseudoalteromonas sp. BSi20495]
Length = 434
Score = 252 bits (643), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 141/388 (36%), Positives = 219/388 (56%), Gaps = 11/388 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+S + +P + +A+ Y TPIQR +P + G DV+A A+TG+GKTAAF +P++Q+
Sbjct: 3 FKSFSFAPEIIQALDELNYHTLTPIQRAAIPAVRKGKDVLASAQTGTGKTAAFALPIIQK 62
Query: 85 L--NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
L ++ AL+L+PTR+LA Q ++ ++T L++ L GG S Q L +
Sbjct: 63 LVESELSTTNAPHALVLAPTRELAEQIANNFRDFAKHTSLKVVSLFGGVSTAGQANALKE 122
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
DI++ATPGRL H+ + ++SL SV+++V DEAD + MGF E + ++ +E RQ
Sbjct: 123 GVDIVVATPGRLFDHI-RLGNLSLASVKHLVLDEADRMLDMGFIEDMQNVIKSCAEERQI 181
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
LLFSAT P+A+ +FA L+ +VR+D + ++ + + + K L +I +
Sbjct: 182 LLFSATFPAAIKQFASKVLKQAEIVRVDQTNSTASTVEHVVYPVEERRKQELLSELIGK- 240
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
+ QQ L+FV+ K + L +G+ VC+GD Q R+ + F+ K L+
Sbjct: 241 -KNWQQVLVFVNMKETADELVKELNLDGIPAGVCHGDKSQGNRRRALREFKEGKVRVLVA 299
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
T+VAARGIDI L VIN D P + +VHR+GR RAGR G A SFV+ E+ L ++
Sbjct: 300 TEVAARGIDIDGLPRVINIDLPWLAEDYVHRIGRTGRAGRQGQAISFVSREEENTLFEIE 359
Query: 383 LFLSKPIRAA------PSEEEVLLDMDG 404
+ + I+ S EVL+D G
Sbjct: 360 TLIGQKIKRVYLEGYEVSNREVLIDKIG 387
>gi|333915443|ref|YP_004489175.1| DEAD/DEAH box helicase domain-containing protein [Delftia sp.
Cs1-4]
gi|333745643|gb|AEF90820.1| DEAD/DEAH box helicase domain protein [Delftia sp. Cs1-4]
Length = 598
Score = 252 bits (643), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 137/386 (35%), Positives = 225/386 (58%), Gaps = 15/386 (3%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE LNL+P + +A+ +GY+ PTPIQ + +P +L+G D++A A+TG+GKTAAF +PML R
Sbjct: 3 FEELNLAPAILKAVLEEGYENPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPMLHR 62
Query: 85 LNQ-HVPQG-----GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138
L+Q VP+ G+RAL+L+PTR+LA Q + + +Y D+ +++ GG M+ Q +
Sbjct: 63 LSQGQVPRNKFGGKGIRALVLTPTRELAAQVEESVRSYAKYLDINSTVIFGGVGMKPQID 122
Query: 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198
+ + DI++ATPGRL+ L + M L +VE +V DEAD + MGF + K+L + +
Sbjct: 123 RIKKGVDILVATPGRLLD-LQQQGFMDLSTVEVLVLDEADRMLDMGFIHDVKKVLALVPK 181
Query: 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258
++Q+LLFSAT + + A LR+P +++ + + + +K LL++
Sbjct: 182 DKQSLLFSATFSDEIRDLANGLLRNPQSIQVTPSNTTVQRITQVIHPVGRGKKKQVLLHI 241
Query: 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
I E+ S Q L+F TK + + + +G+ Q AR ++ F+ +
Sbjct: 242 INENNWS--QVLVFTRTKFGANNVAEFLTKNNISAMALHGNKSQSARTQALAGFKTGELR 299
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
L+ TD+AARGIDI L +V+N++ P + +VHR+GR RAGR G A S V ++ ++
Sbjct: 300 ALVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGREGHAVSLVCMDEEGFM 359
Query: 379 LDLHLFLSK--PIRA----APSEEEV 398
+D+ F + P++ P E+EV
Sbjct: 360 MDIERFTKQEIPVQVLEGFGPEEDEV 385
>gi|241957775|ref|XP_002421607.1| ATP-dependent DEAD-box RNA helicase, ribosome assembly, putative
[Candida dubliniensis CD36]
gi|223644951|emb|CAX40951.1| ATP-dependent DEAD-box RNA helicase, ribosome assembly, putative
[Candida dubliniensis CD36]
Length = 592
Score = 252 bits (643), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 136/350 (38%), Positives = 218/350 (62%), Gaps = 6/350 (1%)
Query: 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQ 83
F++L LS V + I + PTPIQ ++P+ L G D+VA A+TGSGKT A+++P+++
Sbjct: 115 SFQTLQLSRPVLKGIAELKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIPIIE 174
Query: 84 RLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD-LRISLLVGGDSMESQFEELAQ 142
RL + P + +IL+PTR+LALQ +F K+L + + L I L VGG ++ Q E+L
Sbjct: 175 RL-LYKPSTSTKVIILTPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQQEEQLKT 233
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSEN-RQ 201
PDI+IATPGRL+ H+ S++ ++ +V DEAD + GF E+L +IL + ++ RQ
Sbjct: 234 RPDIVIATPGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQEELTEILSLIPKHKRQ 293
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEK-HAALLYMIR 260
TLLFSAT+ + + + + L+ P + +D +++ L F +R+ + ALLY +
Sbjct: 294 TLLFSATMNTRIQDLIQLSLQKPVRIMIDPPKQVASKLLQQFVRIRKRDHLKPALLYQLL 353
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
+ +S+ + ++FV+ K L ++ GL+ S +G + Q+ R +V F++ L
Sbjct: 354 KGVST--RVVVFVARKETAHKLRIVLGLLGLKVSELHGALSQEQRLQNVKNFKSLDVPVL 411
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFV 370
I TD+AARG+DIP ++ VIN+D P +I++HRVGR ARAGR GT+ +FV
Sbjct: 412 ICTDLAARGLDIPKIELVINYDMPKTFEIYLHRVGRTARAGRDGTSITFV 461
>gi|146294196|ref|YP_001184620.1| DEAD/DEAH box helicase [Shewanella putrefaciens CN-32]
gi|145565886|gb|ABP76821.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
CN-32]
Length = 550
Score = 252 bits (643), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 210/365 (57%), Gaps = 5/365 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F SL LS + +A+ +GY P+PIQ + +P +L G DV+A A+TG+GKTA F +P+L+
Sbjct: 14 FTSLGLSAPILKAVAEQGYDTPSPIQAQAIPAVLQGQDVMAAAQTGTGKTAGFTLPLLEL 73
Query: 85 LN--QHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
L+ Q G VR L+L+PTR+LA Q + + G+Y LR +++ GG + Q +L
Sbjct: 74 LSKGQKAQAGQVRTLVLTPTRELAAQVAESVETYGKYLPLRSAVVFGGVPINPQIAKLRH 133
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
D+++ATPGRLM L + + +E +V DEAD + MGF + KIL L + RQ
Sbjct: 134 GVDVLVATPGRLMD-LYNQKAVKFNQLEILVLDEADRMLDMGFIRDIRKILAILPKQRQN 192
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
L+FSAT + E AK + +P + + + +K + + +K A L +I++H
Sbjct: 193 LMFSATFSDEIRELAKGLVNNPVEISVTPRNAAATTVKQWVCPVDKGQKAALLTQLIKQH 252
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
QQ L+F TKH L E G++ + +G+ Q AR ++ F+ + L+
Sbjct: 253 --DWQQVLVFSRTKHGANRLAKNLEEAGIKAAAIHGNKSQTARTKALADFKNGQVRVLVA 310
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
TD+AARG+DI L V+N+D P P+ +VHR+GR RAG +G A S V+SE++ L D+
Sbjct: 311 TDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSSEEIKLLNDIE 370
Query: 383 LFLSK 387
+++
Sbjct: 371 RLINR 375
>gi|85708371|ref|ZP_01039437.1| DNA and RNA helicase [Erythrobacter sp. NAP1]
gi|85689905|gb|EAQ29908.1| DNA and RNA helicase [Erythrobacter sp. NAP1]
Length = 484
Score = 252 bits (643), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 136/363 (37%), Positives = 212/363 (58%), Gaps = 7/363 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L LS V +A+ KGY PTPIQ + +P +L G D++ +A+TG+GKTAAF++P + R
Sbjct: 4 FSDLGLSQPVLQALDLKGYSTPTPIQEQAIPPVLEGRDLLGIAQTGTGKTAAFMLPSIDR 63
Query: 85 L---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L + +P R L+L+PTR+L Q K+ G L++ +VGG S+ +L
Sbjct: 64 LREADNRIPFKSCRMLVLAPTRELVSQIAASAKDYGALAGLKVQSIVGGTSVNKDRNKLH 123
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ DI+IATPGRL+ L + + +L SVE +V DEAD + +GF L +I + + RQ
Sbjct: 124 RGTDILIATPGRLLD-LIDQKAFNLGSVEVLVLDEADQMLDLGFVHALRRISQLVPKERQ 182
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI-- 259
TL FSAT+P A+ E +P V + ++ + + F ++Q+EK + L ++
Sbjct: 183 TLFFSATMPKAIKELVSGYCNNPVQVSVTPESTTAERIDQYLFMVQQDEKQSLLELILSG 242
Query: 260 REHISSD-QQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
R + + ++ LIF TKH + + G+ + +G+ Q R+ + FR KTM
Sbjct: 243 RHKVPGEFERILIFTRTKHGADRVVKKLSRAGIPANAIHGNKSQPQRQRALDEFRRGKTM 302
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
L+ TDVAARGIDIP + +V+N++ P P+ +VHR+GR ARAG+ G A +F ++ AYL
Sbjct: 303 ILVATDVAARGIDIPGVSHVLNYELPNVPEQYVHRIGRTARAGKDGVAIAFCAEDERAYL 362
Query: 379 LDL 381
D+
Sbjct: 363 KDI 365
>gi|395333626|gb|EJF66003.1| DEAD-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 461
Score = 251 bits (642), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 141/386 (36%), Positives = 228/386 (59%), Gaps = 8/386 (2%)
Query: 14 EKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGK 73
E Q + F+SL L + A+++ YK PT IQ + +P L G D++ +A TGSGK
Sbjct: 14 EPQAIAAAPPTFKSLGLIDPLLEALEQMKYKAPTDIQAEALPHALQGRDIIGVASTGSGK 73
Query: 74 TAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSM 133
TAAF +P+LQ+L + P+G + A +++PTR+LA Q + + +G +R + ++GG +
Sbjct: 74 TAAFALPILQKLWED-PKG-LFACVIAPTRELAFQITQQFESIGSAMGVRCATIIGGVDI 131
Query: 134 ESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKIL 193
+SQ LA+ P +I+ATPGRL+ HL E + SL+S++++V DEAD L M F L KIL
Sbjct: 132 QSQKIALAKKPHVIVATPGRLLEHLEETKGFSLRSLKFLVLDEADRLLDMDFGPILDKIL 191
Query: 194 GQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKIS--PDLKLAFFTLRQEEK 251
+ + R T LFSAT+ + +A+ +A L +P VR++V++K S L + + +K
Sbjct: 192 KLIPKERTTYLFSATMTTKVAKLQRASLSNP--VRVEVNSKYSTVSTLLQYYLLMPLPQK 249
Query: 252 HAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSR 311
L+Y+ + + +IF T H + L+++ R G +G + Q AR + +
Sbjct: 250 DVHLIYL--ANTLAQNSMIIFTRTVHDAQRLSIMLRSLGFPAIPLHGQLSQSARLGALGK 307
Query: 312 FRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVT 371
F+A L+ TDVA+RG+DIP +D VIN+D P K ++HRVGR ARAGR+G + + VT
Sbjct: 308 FKAGGRSILVATDVASRGLDIPSVDIVINYDIPTHSKDYIHRVGRTARAGRSGKSITLVT 367
Query: 372 SEDMAYLLDLHLFLSKPIRAAPSEEE 397
D+ +L + + K + P +++
Sbjct: 368 QYDVELVLRIEQVIEKKMELWPVDKD 393
>gi|359433282|ref|ZP_09223619.1| ATP-dependent RNA helicase rhlE [Pseudoalteromonas sp. BSi20652]
gi|357920080|dbj|GAA59868.1| ATP-dependent RNA helicase rhlE [Pseudoalteromonas sp. BSi20652]
Length = 434
Score = 251 bits (642), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 141/388 (36%), Positives = 219/388 (56%), Gaps = 11/388 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+S + +P + +A+ Y TPIQR +P + G DV+A A+TG+GKTAAF +P++Q+
Sbjct: 3 FKSFSFAPEIIQALDELNYHTLTPIQRAAIPAVRKGKDVLASAQTGTGKTAAFALPIIQK 62
Query: 85 L--NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
L ++ AL+L+PTR+LA Q ++ ++T L++ L GG S Q L +
Sbjct: 63 LVESKLSTTNAPHALVLAPTRELAEQIANNFRDFAKHTSLKVVSLFGGVSTAGQANALKE 122
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
DI++ATPGRL H+ + ++SL SV+++V DEAD + MGF E + ++ +E RQ
Sbjct: 123 GVDIVVATPGRLFDHI-RLGNLSLASVKHLVLDEADRMLDMGFIEDMQNVIKSCAEERQI 181
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
LLFSAT P+A+ +FA L+ +VR+D + ++ + + + K L +I +
Sbjct: 182 LLFSATFPAAIKQFASKVLKQAEIVRVDQTNSTASTVEHVVYPVEERRKQELLSELIGK- 240
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
+ QQ L+FV+ K + L +G+ VC+GD Q R+ + F+ K L+
Sbjct: 241 -KNWQQVLVFVNMKETADELVKELNLDGIPAGVCHGDKSQGNRRRALREFKEGKVRVLVA 299
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
T+VAARGIDI L VIN D P + +VHR+GR RAGR G A SFV+ E+ L ++
Sbjct: 300 TEVAARGIDIDGLPRVINIDLPWLAEDYVHRIGRTGRAGRQGQAISFVSREEENTLFEIE 359
Query: 383 LFLSKPIRAA------PSEEEVLLDMDG 404
+ + I+ S EVL+D G
Sbjct: 360 TLIGQKIKRVYLEGYEVSNREVLIDKIG 387
>gi|194334361|ref|YP_002016221.1| DEAD/DEAH box helicase [Prosthecochloris aestuarii DSM 271]
gi|194312179|gb|ACF46574.1| DEAD/DEAH box helicase domain protein [Prosthecochloris aestuarii
DSM 271]
Length = 418
Score = 251 bits (642), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 138/385 (35%), Positives = 223/385 (57%), Gaps = 6/385 (1%)
Query: 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQ 83
GF SLN+ + RA++ +GY PTPIQ + +P+IL G+D++ A+TG+GKTAAF +P+LQ
Sbjct: 2 GFSSLNIIDPIARALREEGYATPTPIQAEAIPVILEGSDLLGCAQTGTGKTAAFAIPLLQ 61
Query: 84 RL---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
L N + + +RAL+++PTR+LA+Q + K GR+T L ++ GG + Q L
Sbjct: 62 LLSERNTYEKKRKIRALVVTPTRELAIQIGESFKAYGRHTGLTNRVIFGGVNQNPQAASL 121
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
DI++ATPGRL+ + + + L+ VE +V DEAD + MGF + KIL L E +
Sbjct: 122 RNGVDIVVATPGRLLDLMGQ-GHLHLRDVEILVLDEADRMLDMGFIHDIRKILAALPEKK 180
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
Q+L FSAT+PS + A L +P V + + ++ + + + K+ L+++++
Sbjct: 181 QSLFFSATMPSEIVRLAGTILHNPAKVSVTPVSSTVETIQQQVYFVDKGNKNRLLVHLLK 240
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
+ S + L+F TKH + + + + +G+ Q+AR+ ++ F+ + T L
Sbjct: 241 DQ--SIKTALVFTRTKHGADKVVKFLLKHDITAEAIHGNKGQNARQRALNNFKKQSTRVL 298
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLD 380
+ TD+AARGID+ L VIN+D + +VHR+GR RAG GTA SF +E+ AYL D
Sbjct: 299 VATDIAARGIDVDALAYVINFDMSNMAETYVHRIGRTGRAGAEGTAISFCDAEEKAYLCD 358
Query: 381 LHLFLSKPIRAAPSEEEVLLDMDGV 405
+ ++K I L D++ V
Sbjct: 359 VEKLIAKKIPVIDRHPFPLTDLNPV 383
>gi|170754257|ref|YP_001782408.1| DEAD/DEAH box helicase [Clostridium botulinum B1 str. Okra]
gi|429244877|ref|ZP_19208296.1| DEAD/DEAH box helicase [Clostridium botulinum CFSAN001628]
gi|169119469|gb|ACA43305.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum B1 str. Okra]
gi|428758067|gb|EKX80520.1| DEAD/DEAH box helicase [Clostridium botulinum CFSAN001628]
Length = 524
Score = 251 bits (642), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 132/382 (34%), Positives = 228/382 (59%), Gaps = 12/382 (3%)
Query: 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQ 83
FE+LNL+ +V +AI+ G++ P+ IQ K++P++L GADV+A A+TG+GKT AF P++
Sbjct: 5 NFENLNLNEDVLKAIQHMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVIS 64
Query: 84 RLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L + + GV+AL+L+PTR+LALQ K L +Y+ ++ + GG+S+E Q +++
Sbjct: 65 ALCDNEKKKGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIERQIKDIKSG 124
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
DI++ TPGR++ H++ + L +++++ DEAD + MGF E + I+ SE +QT+
Sbjct: 125 VDIVVGTPGRILDHINR-RTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTSEEKQTM 183
Query: 204 LFSATLPSALAEFAKAGLRD--PHLVRLDVDTKISPDLKLA--FFTLRQEEKHAALLYMI 259
LFSAT+P+ + + A ++ H+ L + K+A +F ++ ++K A+ +I
Sbjct: 184 LFSATMPAPIKKLALNYMKKDVEHIAILKKSLTVD---KIAQHYFAVKNKDKLEAICRII 240
Query: 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319
+ +IF TK V+ L + +G +GDM Q+ R + +F+ F
Sbjct: 241 DSE--EPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNF 298
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLL 379
L+ TDVAARGID+ + +VIN+D P + +VHR+GR RA + GTA+S VT +++ +
Sbjct: 299 LVATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIR 358
Query: 380 DLHLFLSKPI--RAAPSEEEVL 399
+ + I + P+ E++L
Sbjct: 359 QIERIIKSKITKKELPTLEDIL 380
>gi|163758551|ref|ZP_02165638.1| DEAD/DEAH box helicase-like protein [Hoeflea phototrophica DFL-43]
gi|162283841|gb|EDQ34125.1| DEAD/DEAH box helicase-like protein [Hoeflea phototrophica DFL-43]
Length = 508
Score = 251 bits (642), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 146/393 (37%), Positives = 222/393 (56%), Gaps = 9/393 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L LS + + + PTPIQ + +P +L G DV+ +A+TG+GKTAAF +P+L R
Sbjct: 12 FSQLGLSKALLDTLDQLHLTTPTPIQTQAIPPVLEGRDVIGLAQTGTGKTAAFTLPILHR 71
Query: 85 LNQHVPQGG--VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
L P G R LILSPTR+L+ Q K K+LGR LR +++VGG S+ Q + LA
Sbjct: 72 LAPGKPAGPKKARVLILSPTRELSAQIAKTVKDLGRKLSLRSAVVVGGVSIRPQIKTLAS 131
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
D++IATPGRLM L E +SL +E VV DEAD + +GF + +IL RQT
Sbjct: 132 GVDVLIATPGRLMD-LIEQRAVSLNEIEVVVLDEADQMLDIGFMPAIKRILAMTPATRQT 190
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
LLFSAT+P + + + L DP V + K + ++ + ++ K AL +IR+
Sbjct: 191 LLFSATMPKEIRQLSDRHLTDPIEVSVIPAKKTADRVEHSVMHMQPGAKMGALASLIRDR 250
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
++ ++F TK + +G+ + +G+ Q R+ ++ FRA LI
Sbjct: 251 --KGERVIVFTRTKRGADKAAKRLEGDGINAAAIHGNKSQGQRERALAGFRAGTVPVLIA 308
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
TD+AARGID+P + V+N++ P P+++VHR+GR ARAG GTA +F ++ + L D+
Sbjct: 309 TDIAARGIDVPGVSLVVNYELPNVPEVYVHRIGRTARAGAEGTAVTFCAPDERSLLRDIE 368
Query: 383 --LFLSKPIRAAPSEEEV--LLDMDGVMSKIDQ 411
L ++ P+ AP V L D DG + +++
Sbjct: 369 KMLKVAIPVENAPEGTYVDALADPDGDFAPLNR 401
>gi|149278660|ref|ZP_01884796.1| possible ATP-dependent RNA helicase [Pedobacter sp. BAL39]
gi|149230655|gb|EDM36038.1| possible ATP-dependent RNA helicase [Pedobacter sp. BAL39]
Length = 435
Score = 251 bits (642), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 135/366 (36%), Positives = 223/366 (60%), Gaps = 7/366 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE LNL + +A++ +GY PTPIQ +++P IL+ D++ A+TG+GKTAAF +PMLQ
Sbjct: 3 FEELNLIEPILKALQTEGYTQPTPIQEQSIPTILTSRDLLGCAQTGTGKTAAFAIPMLQL 62
Query: 85 LN-QHVPQGG---VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
LN +H G +RAL+L+PTR+LA+Q + K GR LR ++ GG ++Q + L
Sbjct: 63 LNKEHQNAKGPRPIRALVLTPTRELAIQIEESFKAYGRNLSLRHLVIFGGVGQKAQTDAL 122
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
+ DI+IATPGRL+ +++ ++LK +E V DEAD + MGF + K + +L R
Sbjct: 123 HRGVDILIATPGRLLDLMNQ-GFINLKDIEIFVLDEADRMLDMGFIHDVKKTIAKLPAKR 181
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTL FSAT+P + + A L DP V + + + ++ + + + +K L+++++
Sbjct: 182 QTLFFSATMPPEIQKLANTILVDPLKVEVTPVSSTAEKIEQMIYFVEKGDKKNLLIHILQ 241
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
+ + Q L+F TKH + + + G++ +G+ Q+AR+ ++ F+A+ T L
Sbjct: 242 D--KTIQTALVFTRTKHGADRVVKDLIKVGVKAEAIHGNKSQNARQRALTNFKAKTTRIL 299
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLD 380
+ TD+AARGID+ L +VIN++ P P+ +VHR+GR RAG +G +FSF E+ +L D
Sbjct: 300 VATDIAARGIDVDELTHVINYELPNIPETYVHRIGRTGRAGNSGISFSFCDGEEKEFLDD 359
Query: 381 LHLFLS 386
+ ++
Sbjct: 360 IEKLIA 365
>gi|170725067|ref|YP_001759093.1| DEAD/DEAH box helicase [Shewanella woodyi ATCC 51908]
gi|169810414|gb|ACA84998.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
51908]
Length = 494
Score = 251 bits (642), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 133/367 (36%), Positives = 213/367 (58%), Gaps = 5/367 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F SL LS + +A+ +KGY P+PIQ + +P +L G DV+A A+TG+GKTA F +P+L+
Sbjct: 3 FTSLGLSAPILKAVAQKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLEL 62
Query: 85 LN--QHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
L+ + P VRAL+L+PTR+LA Q + + G+ LR +++ GG + Q +L +
Sbjct: 63 LSRGKRAPAKQVRALVLTPTRELAAQVAESVETYGKNLPLRSAVIFGGVGIGPQISKLGK 122
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
DI++ATPGRL+ L +S K +E +V DEAD + MGF + KIL L RQ
Sbjct: 123 GVDILVATPGRLLD-LYNQGAVSFKQLEVLVLDEADRMLDMGFIHDIKKILKILPAKRQN 181
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
L+FSAT + AK + +P + + + ++ + + Q++K AAL+++++++
Sbjct: 182 LMFSATFSDDIRNLAKGLVNNPVEISVTPRNATAKTVEQYIYPVDQKQKTAALIHLVKQN 241
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
+Q L+F TKH + GL + +G+ Q AR ++ F++ + L+
Sbjct: 242 --EWKQVLVFSRTKHGANRIAKNLEASGLTAAAIHGNKSQGARTKALANFKSGEVRVLVA 299
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
TD+AARGIDI L NV+N+D P P+ +VHR+GR RAG G A S V+ ++ L D+
Sbjct: 300 TDIAARGIDIDQLPNVVNFDLPNVPEDYVHRIGRTGRAGANGQAVSLVSGDESKLLRDIE 359
Query: 383 LFLSKPI 389
+ + I
Sbjct: 360 RLIKQNI 366
>gi|390953372|ref|YP_006417130.1| DNA/RNA helicase [Aequorivita sublithincola DSM 14238]
gi|390419358|gb|AFL80115.1| DNA/RNA helicase, superfamily II [Aequorivita sublithincola DSM
14238]
Length = 423
Score = 251 bits (642), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 144/359 (40%), Positives = 207/359 (57%), Gaps = 5/359 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+SL LS + +AI +KGY+ P+ IQ+K +PLIL DV+A A+TGSGKTA F +PMLQ
Sbjct: 3 FKSLGLSDALLQAISKKGYETPSAIQKKAIPLILERKDVLASAQTGSGKTAGFALPMLQI 62
Query: 85 LNQHVP--QGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
LN + VRALIL+PTR+LA Q +E +TDLR +++ GG Q + L
Sbjct: 63 LNSEPAFRKRPVRALILTPTRELAAQVEDEFREYSEFTDLRSTVIFGGVGANPQIKALRN 122
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
DI++ATPGRL+ L +SL VE +V DEAD + MGF + KIL L RQ
Sbjct: 123 GVDILVATPGRLLD-LENQNALSLSKVEILVLDEADRMLDMGFLRDIKKILALLPNKRQN 181
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
LLFSAT + + A L P LV + + + + + +K ++ +I E
Sbjct: 182 LLFSATFSKEIKKLANEFLHHPVLVEATPENTTVEKIDQTVYRVDKAQKTDLIIKLISE- 240
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
+ QQ L+F TKH L+ + + + +G+ Q AR +S F+ K L+
Sbjct: 241 -GNWQQVLVFTRTKHGANRLSEKLEKAKITSAAIHGNKSQGARTRALSGFKEGKVRVLVA 299
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TD+AARG+DIPLL +VIN++ P + +VHR+GR RAG +G A S V+ +++ YL D+
Sbjct: 300 TDIAARGLDIPLLPHVINFELPNISEDYVHRIGRTGRAGASGEALSLVSLDEVGYLKDI 358
>gi|426201453|gb|EKV51376.1| hypothetical protein AGABI2DRAFT_114110 [Agaricus bisporus var.
bisporus H97]
Length = 754
Score = 251 bits (642), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 141/368 (38%), Positives = 217/368 (58%), Gaps = 12/368 (3%)
Query: 19 KSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78
KS F S+NLS + +A+ G+ PTPIQ T+P+ L G DVV A TGSGKTAAF+
Sbjct: 190 KSTHNSFLSMNLSRPLMKAVTNLGFNKPTPIQASTIPVALLGKDVVGNAVTGSGKTAAFM 249
Query: 79 VPMLQRL---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMES 135
+PM++RL + +R L+L PTR+LA+Q + +L +TD+R+ L+VGG S++S
Sbjct: 250 IPMIERLLFREKGKKAAAIRCLVLVPTRELAVQCYEVGTKLSIHTDIRLCLVVGGLSLKS 309
Query: 136 QFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQ 195
Q +L PDI+IATPGRL+ H+ SL +++ +V DEAD + GF+++L +I+
Sbjct: 310 QEADLRSRPDIVIATPGRLIDHIRNSASFSLDALDILVIDEADRILSEGFSDELTEIIKS 369
Query: 196 LSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTK--ISPDLKLAFFTLR---QEE 250
+RQT+LFSAT+ ++ E + L P VRL VD K + L F +R + E
Sbjct: 370 CPRSRQTMLFSATMTDSVDELVRVSLEKP--VRLFVDPKRTTARGLIQEFVRVRAGKEAE 427
Query: 251 KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVS 310
+ A L+ + R ++ ++F+ +K + ++F G++ +GD+ Q+ R +
Sbjct: 428 RSAMLVTLCRRTFK--RRVIVFLRSKKLAHQMRIVFSLLGMKCEELHGDLSQEQRLRALQ 485
Query: 311 RFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFV 370
FR FL+ TD+A+RG+DI ++ VIN+D P + ++HRVGR ARAGR G A + V
Sbjct: 486 LFRDDAVDFLMATDLASRGLDIKGVETVINYDMPTQLAQYLHRVGRTARAGRGGRAVTLV 545
Query: 371 TSEDMAYL 378
D L
Sbjct: 546 GEADRKML 553
>gi|223999113|ref|XP_002289229.1| atp-depedent helicase [Thalassiosira pseudonana CCMP1335]
gi|220974437|gb|EED92766.1| atp-depedent helicase [Thalassiosira pseudonana CCMP1335]
Length = 435
Score = 251 bits (642), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 145/360 (40%), Positives = 217/360 (60%), Gaps = 12/360 (3%)
Query: 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPM 81
S F SLNL P++ +I + PT IQ ++P L G DV+ +A TGSGKT +F +P+
Sbjct: 38 SKSFSSLNLHPSLLSSIASLQWTNPTQIQAASIPPALEGRDVIGLAETGSGKTGSFAIPI 97
Query: 82 LQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L L + PQ V A+IL+PTR+LA Q + LGR +VGG M SQ LA
Sbjct: 98 LNYLLEK-PQKQVFAVILAPTRELAFQIHEVMVALGRGMGANSVCVVGGVDMASQAIALA 156
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE--- 198
+NP +++ATPGRL+ HL + L+ ++Y+V DEAD + M F +++++IL + +
Sbjct: 157 RNPHVVVATPGRLLDHLQNTKGFHLRQIKYLVMDEADRMLSMDFEKEINEILEVIPDCEK 216
Query: 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLA--FFTLRQEEKHAALL 256
R+T+LFSAT+ S + + +A L DP VR++V TK KL + + + K L
Sbjct: 217 GRRTMLFSATMTSKVEKLQRASLVDP--VRVEVSTKFQTPKKLLQNYLFIPAKYKDCYLT 274
Query: 257 YMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVC-YGDMDQDARKIHVSRFRAR 315
Y+I EH + Q L+F +T ++V+ L ++ R G P++C +G M Q R +++F++
Sbjct: 275 YLINEH--AGQSILVFGATCNNVQRLALMLRNLGF-PAICLHGQMSQPKRLGALTKFKSG 331
Query: 316 KTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDM 375
LI TDVA+RG+DIP +D VIN+D P K ++HRVGR ARAGR+G A + VT D+
Sbjct: 332 GRDILICTDVASRGLDIPSVDVVINFDLPGHGKDYIHRVGRTARAGRSGKAIAMVTQYDV 391
>gi|410692356|ref|YP_003622977.1| ATP-dependent RNA helicase [Thiomonas sp. 3As]
gi|294338780|emb|CAZ87114.1| ATP-dependent RNA helicase [Thiomonas sp. 3As]
Length = 533
Score = 251 bits (642), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 147/401 (36%), Positives = 227/401 (56%), Gaps = 14/401 (3%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L L + RA+ +GY VPTPIQ + +P++L+G D++A A+TG+GKTA F +PMLQR
Sbjct: 3 FQDLGLIEPLVRAVAEQGYTVPTPIQLQAIPVVLAGHDLLAAAQTGTGKTAGFTLPMLQR 62
Query: 85 LNQHVP----QGGV--RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138
L+ P +G + RALIL+PTR+LA Q + GR+ L + GG M+ Q
Sbjct: 63 LSGGEPARNAKGKIIPRALILTPTRELAAQVHENLAAYGRHLKLHSMAMYGGVGMQPQIN 122
Query: 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198
LA+ DI++ATPGRL+ H S+ ++ L +V+ +V DEAD + MGF + +I+ L +
Sbjct: 123 ALARGMDIVVATPGRLLDHQSQ-RNIDLSAVQMLVLDEADRMLDMGFVHDMRRIVALLPK 181
Query: 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258
RQ LLFSAT + A L +P V + + ++ F + +E K L+++
Sbjct: 182 QRQNLLFSATFSEEIKRLAGDFLVNPQQVAVARQNATADLVEQIVFPVDRERKRDMLVHL 241
Query: 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
IRE + QTL+F TKH L ++G+ + +G+ Q AR ++ F++ K
Sbjct: 242 IRER--NWPQTLVFTRTKHGANRLAEQLDKDGIVATGFHGNKTQSARLRALADFKSGKLQ 299
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
L+ TD+AARGIDI L V+N++ P P+ +VHR+GR RAG G A S V +++ +L
Sbjct: 300 VLVATDIAARGIDIDQLPVVVNYELPNIPEDYVHRIGRTGRAGSNGQAISLVCVDELGFL 359
Query: 379 LDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETI 419
D+ + PI +EV+ + + Q I G T+
Sbjct: 360 RDIEKLVRNPI-----TQEVIPGFEPDPNAKAQPIVMGRTV 395
>gi|70996226|ref|XP_752868.1| ATP-dependent RNA helicase (Drs1) [Aspergillus fumigatus Af293]
gi|74672247|sp|Q4WRV2.1|DRS1_ASPFU RecName: Full=ATP-dependent RNA helicase drs1
gi|66850503|gb|EAL90830.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus fumigatus
Af293]
gi|159131623|gb|EDP56736.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus fumigatus
A1163]
Length = 830
Score = 251 bits (642), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 140/358 (39%), Positives = 213/358 (59%), Gaps = 14/358 (3%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ NLS + R + + PTPIQ+KT+P+ L G D+V A TGSGKTAAF+VP+L+R
Sbjct: 312 FQDFNLSRPILRGLASVNFTTPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILER 371
Query: 85 L---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L + VP R IL PTR+LA+Q +L +TD+ LVGG S+ Q L
Sbjct: 372 LLFRPRKVPTS--RVAILMPTRELAVQCYNVATKLATHTDITFCQLVGGFSLREQENILK 429
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ PD+IIATPGR + H+ ++ ++E +V DEAD + GFA++L++IL + ++RQ
Sbjct: 430 KRPDVIIATPGRFIDHMRNSPSFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQ 489
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLA--FFTL---RQEEKHAALL 256
T+LFSAT+ ++ + + GL P VRL VD+K + + L F L R++++ LL
Sbjct: 490 TMLFSATMTDSVDKLIRVGLNRP--VRLMVDSKKNTSMNLTQEFVRLRPGREDKRLGYLL 547
Query: 257 YMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK 316
Y+ E + + ++F K + ++F GL+ + +G M Q+ R V FR K
Sbjct: 548 YLCNEIYTG--RVIVFFRQKREAHRVRIVFGLLGLKAAELHGSMSQEQRIKSVENFREGK 605
Query: 317 TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
FL+ TD+A+RG+DI ++ VIN++ P +I++HRVGR ARAGR+G A + D
Sbjct: 606 VAFLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPD 663
>gi|406837961|ref|ZP_11097555.1| ATP-dependent RNA helicase [Lactobacillus vini DSM 20605]
Length = 494
Score = 251 bits (642), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 152/433 (35%), Positives = 246/433 (56%), Gaps = 23/433 (5%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L LS ++ +AIKR G++ TPIQ T+PL+L G DV+ A+TG+GKTAAF +P+L+
Sbjct: 3 FTELGLSEDLLKAIKRSGFEEATPIQAATIPLVLKGDDVIGQAQTGTGKTAAFGLPVLEH 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
++ V ++ALI+SPTR+LA+QT + LG+ ++ ++ GG + Q L + P
Sbjct: 63 ID--VKLNEIQALIISPTRELAIQTQEELYRLGKDKRAKVQVVYGGADISRQIRALKRAP 120
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
I+ TPGRL+ H+ + L+ V+ V+ DEAD + MGF E + I+ ++ RQTLL
Sbjct: 121 QILAGTPGRLLDHIRR-RTVKLEHVKTVILDEADEMLDMGFVEDIESIIKEVPLQRQTLL 179
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFT-LRQEEKHAALLYMIREHI 263
FSAT+P A+ + + + DP +V++ +++ DL FF R+ EK + ++ +
Sbjct: 180 FSATMPPAILKIGEKFMTDPQIVKIKA-KELTTDLVDQFFVRAREMEKFDTMTRIL--DV 236
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
S T++F TK V+ L+ G +GD+ Q R + +F+A K L+ T
Sbjct: 237 QSPDLTIVFGRTKRRVDELSKGLEARGYNAKGIHGDLSQQRRLSILKQFKAGKLDILVAT 296
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHL 383
DVAARG+DI + +V N+D P P+ +VHR+GR RAG G + +FVT +M YL +
Sbjct: 297 DVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGHHGVSVTFVTPNEMDYLRVIEK 356
Query: 384 FLSK---PIRAAPSEEEVLL--------DMDGVMSKI--DQAIANGETIYGRFPQTVIDL 430
K P++ P+E+E + ++ G++ K+ D+ E + G++ IDL
Sbjct: 357 LTKKRMMPLK-PPTEQEAFIGQMSSAMKEVAGLVDKVDTDKFADQAEKLIGKY--DAIDL 413
Query: 431 VSDRVREIIDSSA 443
V+ + E+ SA
Sbjct: 414 VAVLLDELTHDSA 426
>gi|302499800|ref|XP_003011895.1| hypothetical protein ARB_01875 [Arthroderma benhamiae CBS 112371]
gi|291175449|gb|EFE31255.1| hypothetical protein ARB_01875 [Arthroderma benhamiae CBS 112371]
Length = 814
Score = 251 bits (642), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 145/366 (39%), Positives = 218/366 (59%), Gaps = 15/366 (4%)
Query: 19 KSKSGG---FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTA 75
KS SG F++L+LS + R + G+ PTPIQRKT+P+ L G DVV A TGSGKT
Sbjct: 290 KSTSGAPASFQNLSLSRPILRGLASVGFSTPTPIQRKTIPVALLGKDVVGGAVTGSGKTG 349
Query: 76 AFLVPMLQRL---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
AF+VP+L+RL + VP R IL PTR+LA+Q +L +TD+ LVGG S
Sbjct: 350 AFIVPILERLLYRPRKVPTS--RVAILMPTRELAVQCYNVATKLATFTDITFCQLVGGFS 407
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
+ Q L + PD+IIATPGR + H+ ++ ++E +V DEAD + GFAE+L++I
Sbjct: 408 LREQENILKKRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFAEELNEI 467
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTK--ISPDLKLAFFTLR--Q 248
L + ++RQT+LFSAT+ +++ + + GL P VRL VD+K L F LR +
Sbjct: 468 LTTIPKSRQTMLFSATMTNSVDKLIRVGLNKP--VRLMVDSKKQTVGTLVQEFVRLRPGR 525
Query: 249 EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIH 308
E+K L + + + ++ + ++F K + ++F GL+ + +G M Q+ R
Sbjct: 526 EDKRLGYLMFLCKTVYTN-RVIVFFRQKKEAHRVRIIFGLMGLKAAELHGSMSQEQRIKS 584
Query: 309 VSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFS 368
V FR K +L+ TD+A+RG+DI ++ VIN++ P +I++HRVGR ARAGR+G A +
Sbjct: 585 VEDFRDAKVSYLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACT 644
Query: 369 FVTSED 374
D
Sbjct: 645 IAAEPD 650
>gi|374597153|ref|ZP_09670157.1| DEAD/DEAH box helicase domain protein [Gillisia limnaea DSM 15749]
gi|373871792|gb|EHQ03790.1| DEAD/DEAH box helicase domain protein [Gillisia limnaea DSM 15749]
Length = 412
Score = 251 bits (642), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 135/359 (37%), Positives = 221/359 (61%), Gaps = 8/359 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE L LS + + I G+ PTPIQ K +P IL DV+A A+TG+GKT AF +P+L
Sbjct: 3 FEDLPLSKAILQGISEIGHLTPTPIQEKVIPEILRRNDVIAGAQTGTGKTGAFAIPLLNL 62
Query: 85 LNQHVPQG----GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
L++ V + + LI+SPTR+LA+Q + K +YT+++ ++ GG SM+ Q L
Sbjct: 63 LHKKVGESTEAKSLSVLIISPTRELAVQIEENIKAYAKYTNVKSGVVFGGASMQPQINLL 122
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSEN- 199
+ I++ATPGRL+ L + ++L ++ +V DEAD + MGF +++ KI+ +LS N
Sbjct: 123 KKGLHILVATPGRLLD-LRKQGYINLDEIKVLVLDEADLMLDMGFIDEVQKII-RLSPNL 180
Query: 200 RQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI 259
Q L+FSAT+P+ + + AK L+DP + L ++ +PD+K F + + +K +L+++
Sbjct: 181 EQRLMFSATIPAKVQDLAKNLLKDPEKIELTPNSSAAPDVKQLLFLVPKPDKTELMLFVM 240
Query: 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319
R ++ ++ LIF TK+ VE + G + + +GDM Q R ++ F+ ++
Sbjct: 241 R-NVIKEKSVLIFRRTKYGVEKALESLTKNGFKANALHGDMSQSDRSSALNSFKNKEINI 299
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
L+ TD+AARG+DI LLD V+N+D P P+ +VHR+GR RAG GT+ SF ++++ Y+
Sbjct: 300 LVATDLAARGLDIDLLDYVLNFDIPSMPETYVHRIGRTGRAGNVGTSISFCSADEKKYI 358
>gi|262409233|ref|ZP_06085777.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|294645798|ref|ZP_06723482.1| ATP-dependent RNA helicase RhlE [Bacteroides ovatus SD CC 2a]
gi|294809471|ref|ZP_06768175.1| ATP-dependent RNA helicase RhlE [Bacteroides xylanisolvens SD CC
1b]
gi|262352980|gb|EEZ02076.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|292638877|gb|EFF57211.1| ATP-dependent RNA helicase RhlE [Bacteroides ovatus SD CC 2a]
gi|294443343|gb|EFG12106.1| ATP-dependent RNA helicase RhlE [Bacteroides xylanisolvens SD CC
1b]
Length = 374
Score = 251 bits (642), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 131/371 (35%), Positives = 222/371 (59%), Gaps = 6/371 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ LN++ + +AI KGY VPTPIQ K +P L+ D++ A+TG+GKTA+F +P++Q
Sbjct: 3 FKELNITEPILKAIGEKGYTVPTPIQEKAIPPALAKRDILGCAQTGTGKTASFAIPIIQH 62
Query: 85 LN---QHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L + + G++ALIL+PTR+LALQ + + ++T +R ++ GG + Q + L
Sbjct: 63 LQLDKEAARRQGIKALILTPTRELALQISECIDDYSKHTRIRHGVIFGGVNQRPQVDLLR 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ DI++ATPGRL+ +S+ + L +++Y V DEAD + MGF + +IL +L + +Q
Sbjct: 123 KGIDILVATPGRLLDLMSQ-GHIHLDTIQYFVLDEADRMLDMGFIHDIKRILPKLPKEKQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
TL FSAT+P ++ K+ L++P + + + +K + + ++EK L+ ++ +
Sbjct: 182 TLFFSATMPDSIISLTKSLLKNPVKIYITPKSSTVDSIKQLVYFVEKKEKSQLLISILSK 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ DQ LIF TKH+ + + + + G+ +G+ Q AR+ + F++ KT ++
Sbjct: 242 --AEDQSVLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRVMV 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TD+A+RGIDI L VIN+D P P+ +VHR+GR RAG GTA +F + E+ + D+
Sbjct: 300 ATDIASRGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNMGTALTFCSQEERKLVNDI 359
Query: 382 HLFLSKPIRAA 392
K + A
Sbjct: 360 QKLTGKKLNKA 370
>gi|212558407|gb|ACJ30861.1| ATP-dependent RNA helicase, DEAD box family [Shewanella
piezotolerans WP3]
Length = 432
Score = 251 bits (642), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 134/369 (36%), Positives = 218/369 (59%), Gaps = 6/369 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FES + +P + RAI GY+ TPIQ++ +P + G DV+A A+TG+GKTAAF +P+LQ+
Sbjct: 3 FESFSFAPEILRAISECGYQKMTPIQQQAIPAVRRGQDVLASAQTGTGKTAAFSLPILQK 62
Query: 85 L--NQHVPQ-GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
+ N Q RALIL+PTR+LA Q + +Y ++ + +VGG M+SQ +L
Sbjct: 63 MLDNPSATQRSNARALILTPTRELAAQIADNINDYAKYLEVNVVTIVGGVKMDSQATKLK 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ DIIIATPGRL+ H+ ++SL +V+++V DEAD + MGF+ + KIL ++ RQ
Sbjct: 123 RGADIIIATPGRLLEHIVAC-NLSLSNVDFLVLDEADRMLDMGFSADIQKILQAVNSKRQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
L+FSAT + + + A + P+++ D + + + + Q K L +I +
Sbjct: 182 NLMFSATFSAPVKKLASEMMVKPNVITADKQNTTADTVSQVIYPVEQRRKRELLSELIGK 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ QQ L+F +T+ + L +G+ +V +G+ Q +R+ + F+ K L+
Sbjct: 242 K--NWQQVLVFTATRDAADKLEKELNLDGIPTAVVHGEKAQGSRRRALREFKEGKMRVLV 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
T+VAARG+DI L+ V+N+D P + +VHR+GR RAG++G A SFV+ E+ L D+
Sbjct: 300 ATEVAARGLDIQDLEYVVNYDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLADI 359
Query: 382 HLFLSKPIR 390
+ + +R
Sbjct: 360 EKLIGQKLR 368
>gi|170760570|ref|YP_001788120.1| DEAD/DEAH box helicase [Clostridium botulinum A3 str. Loch Maree]
gi|169407559|gb|ACA55970.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A3 str. Loch Maree]
Length = 524
Score = 251 bits (642), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 132/382 (34%), Positives = 228/382 (59%), Gaps = 12/382 (3%)
Query: 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQ 83
FE+LNL+ +V +AI+ G++ P+ IQ K++P++L GADV+A A+TG+GKT AF P++
Sbjct: 5 NFENLNLNEDVLKAIQHMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVIS 64
Query: 84 RLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L + + GV+AL+L+PTR+LALQ K L +Y+ ++ + GG+S+E Q +++
Sbjct: 65 SLCDNEKKKGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIERQIKDIKSG 124
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
DI++ TPGR++ H++ + L +++++ DEAD + MGF E + I+ E +QT+
Sbjct: 125 VDIVVGTPGRILDHINR-RTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTPEEKQTM 183
Query: 204 LFSATLPSALAEFAKAGLRD--PHLVRLDVDTKISPDLKLA--FFTLRQEEKHAALLYMI 259
LFSAT+P+A+ + A +++ H+ L + K+A +F ++ ++K A+ +I
Sbjct: 184 LFSATMPAAIKKLALNYMKEDVEHIAILKKSLTVD---KIAQHYFAVKNKDKLEAICRII 240
Query: 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319
+ +IF TK V+ L + +G +GDM Q+ R + +F+ F
Sbjct: 241 DSE--EPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNF 298
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLL 379
L+ TDVAARGID+ + +VIN+D P + +VHR+GR RA + GTA+S VT +++ +
Sbjct: 299 LVATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIR 358
Query: 380 DLHLFLSKPI--RAAPSEEEVL 399
+ I + P+ E++L
Sbjct: 359 QIERITKSKITKKELPTLEDIL 380
>gi|301754403|ref|XP_002913034.1| PREDICTED: probable ATP-dependent RNA helicase DDX27-like
[Ailuropoda melanoleuca]
Length = 764
Score = 251 bits (642), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 149/429 (34%), Positives = 240/429 (55%), Gaps = 16/429 (3%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ +NLS + +AI G+K PTPIQ+ +P+ L G D+ A A TG+GKTAAF +P+L+R
Sbjct: 188 FQDMNLSRPLLKAITVMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLER 247
Query: 85 LNQHVPQGGV-RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L Q V R L+L PTR+L +Q TK+L ++ ++ L VGG ++SQ L
Sbjct: 248 LIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCNITTCLAVGGLDVKSQEAALRAA 307
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
PDI+IATPGRL+ HL L S+E ++ DEAD + F EQ+ +I+ S +RQT+
Sbjct: 308 PDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTM 367
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR--QEEKHAALLYMIRE 261
LFSAT+ + + A L++P + ++ +T ++P L+ F +R +E A++ +
Sbjct: 368 LFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLT 427
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+D ++F TK +++L GL+ +G++ Q R + RF+ + L+
Sbjct: 428 RTFTD-HVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILV 486
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TDVAARG+DI + VIN+ P K +VHRVGR ARAGR G + S V E+ L ++
Sbjct: 487 ATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKMLKEI 546
Query: 382 HLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDS 441
P++A ++V+L + K+++ +Y V+ L ++ +E+ S
Sbjct: 547 VKAAKAPVKARILPQDVILKFRDKIEKMEK------DVYA-----VLQLEAEE-KELQQS 594
Query: 442 SADLNSLQR 450
A +N+ +R
Sbjct: 595 EAQINTAKR 603
>gi|255034017|ref|YP_003084638.1| DEAD/DEAH box helicase [Dyadobacter fermentans DSM 18053]
gi|254946773|gb|ACT91473.1| DEAD/DEAH box helicase domain protein [Dyadobacter fermentans DSM
18053]
Length = 590
Score = 251 bits (642), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 140/382 (36%), Positives = 222/382 (58%), Gaps = 16/382 (4%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE L L+ N+ +A++ G++ P+PIQ + +P +L G+DV+ A+TG+GKTAAF +P+L+R
Sbjct: 9 FEELGLNENILKALQEMGFEKPSPIQAQGIPAVLQGSDVIGQAQTGTGKTAAFGIPVLER 68
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT----DLRISLLVGGDSMESQFEEL 140
++ V+ALIL PTR+LA+Q ++ELGR + +RI + GGDS++ Q L
Sbjct: 69 ID--TSSNAVQALILCPTRELAVQV---SEELGRLSKFMRGVRIEAIYGGDSIDRQIRSL 123
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
+ I++ TPGR+M H+ E + V +V DEAD + MGF E + IL + E+R
Sbjct: 124 KKGVHIVVGTPGRVMDHM-ERRTLKFDEVRMMVLDEADEMLDMGFREDIESILADMPEDR 182
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI- 259
QT+LFSAT+ + K L DP L+++ + + +++ +F ++ + K + +I
Sbjct: 183 QTILFSATMSKPIMSITKRFLNDPTLIKVVRNELTNQNIEQVYFEVKPQAKVEVMTRLID 242
Query: 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319
HI S L+F +TK V+ + + G +GD+ Q R +S+F+A T
Sbjct: 243 MHHIKS---LLVFCNTKRKVDEIVEDLQLRGYASEGIHGDLRQQQRSNVMSKFKAGVTTI 299
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLL 379
L+ TDVAARGID+ LD VIN+D P + +VHR+GR RAG +G AFS V ++ L
Sbjct: 300 LVATDVAARGIDVSGLDGVINYDIPMDEEYYVHRIGRTGRAGMSGKAFSLVARDEKYRLK 359
Query: 380 DLHLFLSKPIRAA--PSEEEVL 399
+ + I PS E+++
Sbjct: 360 SIESYTKVKIEKGVIPSFEDIV 381
>gi|170698992|ref|ZP_02890050.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
IOP40-10]
gi|170136099|gb|EDT04369.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
IOP40-10]
Length = 472
Score = 251 bits (642), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 134/370 (36%), Positives = 213/370 (57%), Gaps = 8/370 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FESL L+ + +A+ GY PTPIQ++ +P +L G D++A A+TG+GKTA F +P+LQR
Sbjct: 3 FESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQR 62
Query: 85 LNQHVPQG-----GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139
L+ + + VRALIL+PTR+LA Q + + +Y LR +++ GG S+ Q +
Sbjct: 63 LHTYYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDA 122
Query: 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSEN 199
L + DI++ATPGRL+ H+ + + + L +++ +V DEAD + MGF + ++L +L
Sbjct: 123 LKRGVDIVVATPGRLLDHMQQ-KTIDLSNLDILVLDEADRMLDMGFIHDIKRVLAKLPPQ 181
Query: 200 RQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI 259
RQ LLFSAT + A + L P L+ + + + + ++ K L ++I
Sbjct: 182 RQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAESVAQKIHPVDRDRKRELLTHLI 241
Query: 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319
REH + Q L+F TKH L ++G+ +G+ Q AR ++ F++
Sbjct: 242 REH--NWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKSSTLQV 299
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLL 379
L+ TD+AARGIDI L +V+N+D P P+ +VHR+GR RAG TG A S V ++ L
Sbjct: 300 LVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLR 359
Query: 380 DLHLFLSKPI 389
D+ + + I
Sbjct: 360 DIERLIKREI 369
>gi|414070080|ref|ZP_11406069.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. Bsw20308]
gi|410807592|gb|EKS13569.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. Bsw20308]
Length = 434
Score = 251 bits (642), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 140/385 (36%), Positives = 218/385 (56%), Gaps = 11/385 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+S + +P + +A+ Y TPIQR +P + G DV+A A+TG+GKTAAF +P++Q+
Sbjct: 3 FKSFSFAPEIIQALDELNYHTLTPIQRAAIPAVRKGKDVLASAQTGTGKTAAFALPIIQK 62
Query: 85 L--NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
L ++ AL+L+PTR+LA Q ++ ++T L++ L GG S Q L +
Sbjct: 63 LVESELSTTNAPHALVLAPTRELAEQIANNFRDFAKHTSLKVVSLFGGVSTAGQANALKE 122
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
DI++ATPGRL H+ + ++SL SV+++V DEAD + MGF E + ++ +E RQ
Sbjct: 123 GVDIVVATPGRLFDHI-RLGNLSLASVKHLVLDEADRMLDMGFIEDMQNVIKSCAEERQI 181
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
LLFSAT P+A+ +FA L+ +VR+D + ++ + + + K L +I +
Sbjct: 182 LLFSATFPAAIKQFASKVLKQAEIVRVDQTNSTASTVEHVVYPVEERRKQELLSELIGK- 240
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
+ QQ L+FV+ K + L +G+ VC+GD Q R+ + F+ K L+
Sbjct: 241 -KNWQQVLVFVNMKETADELVKELNLDGIPAGVCHGDKSQGNRRRALREFKEGKVRVLVA 299
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
T+VAARGIDI L VIN D P + +VHR+GR RAGR G A SFV+ E+ L ++
Sbjct: 300 TEVAARGIDIDGLPRVINIDLPWLAEDYVHRIGRTGRAGRQGQAISFVSREEENTLFEIE 359
Query: 383 LFLSKPIRAA------PSEEEVLLD 401
+ + I+ S EVL+D
Sbjct: 360 TLIGQKIKRVYLEGYEVSNREVLID 384
>gi|198423018|ref|XP_002125988.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 27
[Ciona intestinalis]
Length = 718
Score = 251 bits (642), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 139/375 (37%), Positives = 216/375 (57%), Gaps = 12/375 (3%)
Query: 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQ 83
GF+ +N+S + +AI Y PTPIQ+ +P+ L G D+ A A TG+GKTAAF++P+L+
Sbjct: 172 GFQQMNISRPLLKAISEINYVTPTPIQQAAIPIGLLGRDICACAATGTGKTAAFMLPVLE 231
Query: 84 RL---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
RL Q P R L L PTR+LA+Q T L ++++LRI L GG M+SQ L
Sbjct: 232 RLLYRTQSTP--ITRVLCLVPTRELAVQVYSVTHHLAQHSNLRICLAAGGLDMKSQEAAL 289
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
Q PDI+IATPGRL+ HL L+ VE ++ DEAD + F +Q+++I+ S +R
Sbjct: 290 RQGPDIVIATPGRLIDHLHNTPSFDLQMVEILILDEADRMLDEFFEDQMNEIIKLCSHHR 349
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ--EEKHAALLYM 258
QT+LFSAT+ + E A L++P + ++ +T ++P L+ F +R+ E A++
Sbjct: 350 QTMLFSATMSEQVQELAAVSLKNPVKIFVNSNTDVAPFLRQEFIRIRETREGDREAIVAA 409
Query: 259 I--REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK 316
+ R IS+ L+F TK ++++ GL+ +G++ Q R + RF+
Sbjct: 410 LCSRSFISN---VLVFTQTKKQAHRMHIVLGLLGLKAGELHGNLSQGQRLESLKRFKNGD 466
Query: 317 TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMA 376
L+ TD+AARG+DI + VIN P + +VHRVGR ARAG++G + S V +
Sbjct: 467 IDILVCTDLAARGLDIENVKTVINLTMPNTQQHYVHRVGRTARAGKSGRSVSLVGETERK 526
Query: 377 YLLDLHLFLSKPIRA 391
L ++ F P+++
Sbjct: 527 LLKEIVKFAKNPVKS 541
>gi|407476475|ref|YP_006790352.1| ATP-dependent RNA helicase CshA [Exiguobacterium antarcticum B7]
gi|407060554|gb|AFS69744.1| ATP-dependent RNA helicase CshA [Exiguobacterium antarcticum B7]
Length = 539
Score = 251 bits (642), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 134/377 (35%), Positives = 220/377 (58%), Gaps = 7/377 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F LNLS + + + + G++ TPIQ +T+P+ LSG D++ A+TG+GKTAAF +P ++R
Sbjct: 4 FRELNLSEALIKGVLKMGFEEATPIQAETIPVGLSGVDLIGQAQTGTGKTAAFGIPTIER 63
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
++ ++AL+L+PTR+LA+Q + +G + + GG ++ Q L +NP
Sbjct: 64 IDAKSRH--IQALVLAPTRELAIQVAEELNRIGEVKRVHALPVYGGQQIDRQIRALRKNP 121
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
I++ATPGRLM H++ + ++L V+ V+ DEAD + MGF E + KILG L E+RQTLL
Sbjct: 122 QIVVATPGRLMDHMNR-KTLNLDHVQTVILDEADEMLNMGFVEDIEKILGTLPESRQTLL 180
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P + + A + P +++ ++ +F L++ +K L +I
Sbjct: 181 FSATMPQQIRKIADRFMTTPTHIKVKAKEMTVENIDQSFIELKENQKFDVLCRLI--DTD 238
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
S + ++IF TK V+ + + G +GD+ Q R + RF+ L+ TD
Sbjct: 239 SPELSIIFGRTKKRVDEMTEGLVQRGYTADGLHGDLTQAKRDQVIRRFKKGTIDILVATD 298
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
VAARG+DI + +V N+D P P+ +VHR+GR RAG+TG+A +FVT + + +
Sbjct: 299 VAARGLDITGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGSAITFVTPREFGQIKTIERV 358
Query: 385 LSKPI--RAAPSEEEVL 399
+K + R AP+ +E+L
Sbjct: 359 TNKKMSRRHAPTLDEIL 375
>gi|346324903|gb|EGX94500.1| ATP-dependent RNA helicase (Drs1), putative [Cordyceps militaris
CM01]
Length = 769
Score = 251 bits (642), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 136/366 (37%), Positives = 211/366 (57%), Gaps = 10/366 (2%)
Query: 15 KQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKT 74
K K++K F++++LS + R + G+ PTPIQ KT+P+ L G D+V A TGSGKT
Sbjct: 243 KGGKEAKISSFQAMSLSRPILRGLTNVGFTKPTPIQSKTIPIALMGKDIVGGAVTGSGKT 302
Query: 75 AAFLVPMLQRL---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGD 131
AF++P+L+RL + +P R ++L+PTR+LA+Q +L +TD++ +L VGG
Sbjct: 303 GAFIIPILERLLYRPKKIPT--TRVVVLTPTRELAIQCHAVATKLAAHTDIKFTLAVGGL 360
Query: 132 SMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHK 191
S++ Q EL PD+IIATPGR + H+ + +VE +V DEAD + GFA++L++
Sbjct: 361 SLKVQEAELRLRPDVIIATPGRFIDHMRNSASFPIDTVEILVLDEADRMLEDGFADELNE 420
Query: 192 ILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEK 251
IL L ++RQT+LFSAT+ S + + G+ P V +D + L F LR +
Sbjct: 421 ILTTLPKSRQTMLFSATMTSTVDRLIRLGMNKPARVMVDSQKRTVGTLVQEFVRLRPGRE 480
Query: 252 HAALLYMIREHISS---DQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIH 308
+ + Y+ H+ ++ ++F K ++F G+ + +G M Q R
Sbjct: 481 NKRMGYLT--HLCKTLYTERVIVFFRQKKDAHEARIIFSILGMTCAELHGSMSQTGRIES 538
Query: 309 VSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFS 368
V FR K +L+ TD+A+RG+DI +D VIN++ P +I+VHRVGR ARAGR G A +
Sbjct: 539 VEAFRDGKVNYLLATDLASRGLDIRGVDTVINYEAPQSLEIYVHRVGRTARAGRKGVALT 598
Query: 369 FVTSED 374
D
Sbjct: 599 LAAESD 604
>gi|384156092|ref|YP_005538907.1| ATP-dependent RNA helicase [Arcobacter butzleri ED-1]
gi|345469646|dbj|BAK71097.1| ATP-dependent RNA helicase [Arcobacter butzleri ED-1]
Length = 435
Score = 251 bits (642), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 139/369 (37%), Positives = 213/369 (57%), Gaps = 6/369 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F +L L + RAIK +GY PTPIQ K++P+ILS DV+A A+TG+GKTA F +P+LQR
Sbjct: 3 FSNLGLCKEILRAIKEEGYTTPTPIQSKSIPVILSKKDVLAAAQTGTGKTAGFTLPLLQR 62
Query: 85 L---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L N + VRALIL+PTR+LA Q + + G+Y + +++ GG + Q L
Sbjct: 63 LKDSNLKDKKTQVRALILTPTRELAAQVAQSVETYGKYLPFKSAVIFGGVGINPQKALLK 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ DIIIATPGRL+ +S+ + + L +E++V DEAD + MGF + KIL L + RQ
Sbjct: 123 KGVDIIIATPGRLLDLISQ-DSLDLSKIEFLVLDEADRMLDMGFINDIKKILAILPKQRQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
LLFSAT + + + A L+ P LV + S ++ + ++ K LL+++ +
Sbjct: 182 NLLFSATFSNEIKKLADGLLKSPVLVEVSKANSASFKVEQVVHHVDKDRKKELLLHLVNK 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ S QQ L+F TKH L+ ++ + + +G+ Q AR + F+ K L+
Sbjct: 242 N--SWQQVLVFTRTKHGANKLSEALVKDKITSAAIHGNKSQGARTKALDDFKNGKVRVLV 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TD+AARGIDI L +V+N++ P + +VHR+GR RA G A S V ++ YL +
Sbjct: 300 ATDIAARGIDIEQLPHVVNFELPNVAEDYVHRIGRTGRARNNGIAISLVCVDEHEYLFGI 359
Query: 382 HLFLSKPIR 390
+ + I+
Sbjct: 360 EKLIKQKIK 368
>gi|377555812|ref|ZP_09785540.1| ATP-dependent RNA helicase RhlE [endosymbiont of Bathymodiolus sp.]
Length = 430
Score = 251 bits (642), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 136/366 (37%), Positives = 212/366 (57%), Gaps = 5/366 (1%)
Query: 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQ 83
GF L LS ++ A+ +KGY P+PIQ + +P++L G D++A A+TG+GKTA F +P+LQ
Sbjct: 2 GFSKLGLSDSILEAVTKKGYDKPSPIQEQAIPVVLDGKDIMAAAQTGTGKTAGFTLPILQ 61
Query: 84 RLNQHVP--QGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L++ P VR LIL+PTR+LA Q + G+ L+ +++ GG + Q ++L
Sbjct: 62 ILSKGTPAKSNQVRTLILTPTRELAAQVNASVIDYGKQLPLKSTVVFGGVKINPQMQKLR 121
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
DI++ATPGRL+ S+ + +E +VFDEAD + MGF + +IL L +NRQ
Sbjct: 122 GGVDILVATPGRLLDLYSQ-NAVKFDQLEILVFDEADRMLDMGFIHDIKRILKILPKNRQ 180
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
TL+FSAT + + AK + DP + + +K + + +K A L ++I+E
Sbjct: 181 TLMFSATFSEEIRKLAKTLVNDPIEISVTPRNTTVKSVKQWIHPVDKSKKQALLTHLIQE 240
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
H S Q L+F TKH + ++G+ + +G+ Q AR ++ F+A K L+
Sbjct: 241 H--SWYQVLVFSRTKHGANRIATQLGKKGITAAAIHGNKSQGARTRALADFKAGKVNVLV 298
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TD+AARGIDI L +V+N+D P P+ +VHR+GR RAG G A S V++++ L D+
Sbjct: 299 ATDIAARGIDIVELPHVVNFDLPNVPEDYVHRIGRTGRAGSKGEAISLVSADEAKQLFDI 358
Query: 382 HLFLSK 387
K
Sbjct: 359 ERLTQK 364
>gi|326932134|ref|XP_003212175.1| PREDICTED: hypothetical protein LOC100549747 [Meleagris gallopavo]
Length = 1561
Score = 251 bits (642), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 145/408 (35%), Positives = 227/408 (55%), Gaps = 23/408 (5%)
Query: 15 KQKKKSKSGG-------------------FESLNLSPNVFRAIKRKGYKVPTPIQRKTMP 55
K++K+SK GG F+ +NLS + +AI G+K PTPIQ+ +P
Sbjct: 956 KERKRSKKGGQKEAESFFEDASQYDDSLSFQDMNLSRPLLKAITALGFKQPTPIQKACIP 1015
Query: 56 LILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGV-RALILSPTRDLALQTLKFTK 114
+ L G D+ A A TG+GKTAAF++P+L+RL Q + R L+L PTR+L +Q TK
Sbjct: 1016 VGLLGKDICACAATGTGKTAAFILPVLERLIYKPRQAPITRVLVLVPTRELGIQVHSVTK 1075
Query: 115 ELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVF 174
+L +++ + L VGG +++Q L PDI+IATPGRL+ HL L SVE ++
Sbjct: 1076 QLAQFSSVTSCLAVGGLDVKTQEAALRSGPDILIATPGRLIDHLHNCPSFHLSSVEVLIL 1135
Query: 175 DEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTK 234
DEAD + F EQ+ +I+ S++RQT+LFSAT+ + + A L++P + ++ +T
Sbjct: 1136 DEADRMLDEYFEEQMKEIIRLCSKHRQTMLFSATMTEEVKDLASVSLKNPTRIFVNSNTD 1195
Query: 235 ISPDLKLAFFTLR--QEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLE 292
++P L+ F +R +E A++ + D ++F TK +++L GL
Sbjct: 1196 VAPFLRQEFIRIRPNREGDREAIVSALLTRTFPD-HVMLFTQTKKQAHRMHILLGLMGLR 1254
Query: 293 PSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVH 352
+G++ Q R + RF+ + L+ TDVAARG+DI + VIN+ P K +VH
Sbjct: 1255 VGELHGNLSQAQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTTKHYVH 1314
Query: 353 RVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLL 400
RVGR ARAGR G + S V E+ L ++ P++A ++V+L
Sbjct: 1315 RVGRTARAGRAGRSVSLVGEEERKMLKEIVKSAKTPVKARILPQDVIL 1362
>gi|115352774|ref|YP_774613.1| DEAD/DEAH box helicase [Burkholderia ambifaria AMMD]
gi|115282762|gb|ABI88279.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria AMMD]
Length = 480
Score = 251 bits (642), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 134/370 (36%), Positives = 213/370 (57%), Gaps = 8/370 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FESL L+ + +A+ GY PTPIQ++ +P +L G D++A A+TG+GKTA F +P+LQR
Sbjct: 3 FESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQR 62
Query: 85 LNQHVPQG-----GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139
L+ + + VRALIL+PTR+LA Q + + +Y LR +++ GG S+ Q +
Sbjct: 63 LHTYYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDA 122
Query: 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSEN 199
L + DI++ATPGRL+ H+ + + + L +++ +V DEAD + MGF + ++L +L
Sbjct: 123 LKRGVDIVVATPGRLLDHMQQ-KTIDLSNLDILVLDEADRMLDMGFIHDIKRVLAKLPPQ 181
Query: 200 RQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI 259
RQ LLFSAT + A + L P L+ + + + + ++ K L ++I
Sbjct: 182 RQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAESVAQKIHPVDRDRKRELLTHLI 241
Query: 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319
REH + Q L+F TKH L ++G+ +G+ Q AR ++ F++
Sbjct: 242 REH--NWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKSSTLQV 299
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLL 379
L+ TD+AARGIDI L +V+N+D P P+ +VHR+GR RAG TG A S V ++ L
Sbjct: 300 LVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLR 359
Query: 380 DLHLFLSKPI 389
D+ + + I
Sbjct: 360 DIERLIKREI 369
>gi|68473179|ref|XP_719395.1| hypothetical protein CaO19.7635 [Candida albicans SC5314]
gi|74656492|sp|Q5ACK7.1|DRS1_CANAL RecName: Full=ATP-dependent RNA helicase DRS1
gi|46441210|gb|EAL00509.1| hypothetical protein CaO19.7635 [Candida albicans SC5314]
gi|238880416|gb|EEQ44054.1| hypothetical protein CAWG_02313 [Candida albicans WO-1]
Length = 613
Score = 251 bits (642), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 136/349 (38%), Positives = 219/349 (62%), Gaps = 6/349 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F++L LS V + I + PTPIQ ++P+ L G D+VA A+TGSGKT A+++P+++R
Sbjct: 132 FQTLQLSRPVLKGIAELKFTKPTPIQSASIPIALLGKDIVAGAQTGSGKTGAYMIPIIER 191
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD-LRISLLVGGDSMESQFEELAQN 143
L + P + +IL+PTR+LALQ +F K+L + + L I L VGG ++ Q E+L
Sbjct: 192 L-LYKPSTSTKVIILTPTRELALQVYEFGKKLSHHVNNLNIGLAVGGLNLRQQEEQLKTR 250
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSEN-RQT 202
PDI+IATPGRL+ H+ S++ ++ +V DEAD + GF ++L +IL + ++ RQT
Sbjct: 251 PDIVIATPGRLIDHIRNSPSFSVQDIQVLVIDEADRMLEEGFQDELTEILSLIPKHKRQT 310
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEK-HAALLYMIRE 261
LLFSAT+ + + + + L+ P + +D ++ L F +R+ ++ ALLY + +
Sbjct: 311 LLFSATMNTRIQDLIQLSLQKPVRIMIDPPKSVASKLLQQFVRIRKRDQLKPALLYQLLK 370
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+SS + ++FV+ K L ++ GL+ S +G + Q+ R +V F++ + LI
Sbjct: 371 GVSS--RVVVFVARKETAHRLRIVLGLLGLKVSELHGALTQEQRLQNVKNFKSLEVPVLI 428
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFV 370
TD+AARG+DIP ++ VIN+D P +I++HRVGR ARAGR GT+ +FV
Sbjct: 429 CTDLAARGLDIPKIELVINYDMPKTFEIYLHRVGRTARAGRDGTSITFV 477
>gi|410621771|ref|ZP_11332615.1| ATP-dependent RNA helicase rhlB [Glaciecola pallidula DSM 14239 =
ACAM 615]
gi|410158664|dbj|GAC27989.1| ATP-dependent RNA helicase rhlB [Glaciecola pallidula DSM 14239 =
ACAM 615]
Length = 421
Score = 251 bits (642), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 137/367 (37%), Positives = 213/367 (58%), Gaps = 5/367 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+SL LSP V +AI+ KGYK P+PIQ + +P++L G DV+A A+TG+GKTAAF +P+L
Sbjct: 3 FKSLGLSPLVLQAIEEKGYKQPSPIQEQGIPVVLEGKDVMAAAQTGTGKTAAFTLPILSM 62
Query: 85 LNQHVPQGG--VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
P V+ALIL+PTR+LA Q + + G++ +L+ ++ GG + Q +L +
Sbjct: 63 FENTTPAAANNVKALILTPTRELAAQIDENIRSYGKHLNLKTQVVFGGVGINPQMIKLRR 122
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
DI++ATPGRLM L + + +E +V DEAD + MGF + KI+ L + RQ
Sbjct: 123 GVDILVATPGRLMD-LYQQRAVKFSQLEILVLDEADRMLDMGFIHDIKKIMAILPKKRQN 181
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
LLFSAT + + AK + +P + ++ + ++ + + K+ L ++I E+
Sbjct: 182 LLFSATFSDDIRKLAKTIVNNPVEISVNTKNSTATAVEQVIIPVDKTNKNTLLSHLIIEN 241
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
+ Q L+F TKH + L ++ + S +G+ Q AR ++ F++ K L
Sbjct: 242 --NWHQVLVFCRTKHGADRLAKFLIKKNISASAIHGNKSQGARTRALADFKSGKVQILAA 299
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
TD+AARGIDI L ++N+D P P+ +VHR+GR RAG TG A+SF T ED + D+
Sbjct: 300 TDIAARGIDINELPQIVNFDLPNIPEDYVHRIGRTGRAGATGHAYSFATIEDKKNISDIQ 359
Query: 383 LFLSKPI 389
+ K I
Sbjct: 360 SLIGKVI 366
>gi|390571862|ref|ZP_10252096.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
terrae BS001]
gi|389936192|gb|EIM98086.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
terrae BS001]
Length = 513
Score = 251 bits (642), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 137/375 (36%), Positives = 213/375 (56%), Gaps = 10/375 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+SL LS + RA+ GY PTPIQ++ +P +L+G D++A A+TG+GKTA F +P+LQR
Sbjct: 3 FDSLGLSEQLVRAVNELGYTSPTPIQQQAIPAVLNGGDLLAGAQTGTGKTAGFTLPILQR 62
Query: 85 LNQHVPQGG----VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
L P G VRALIL+PTR+LA Q + + G+Y L+ +++ GG + Q + L
Sbjct: 63 LLTMPPAPGGKRVVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIDAL 122
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
+ DI++ATPGRL+ H+ + + + L +E +V DEAD + MGF + ++L +L R
Sbjct: 123 RRGVDIVVATPGRLLDHMQQ-KTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPKR 181
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
Q LLFSAT + A L P L+ + + + + ++ K L ++I+
Sbjct: 182 QNLLFSATFSDEIKALADNLLDSPALIEVARRNTTAESVAQKIHPVDRDRKREMLTHLIK 241
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
+H + Q L+F TKH L ++G+ +G+ Q AR ++ F+ L
Sbjct: 242 QH--NWFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKNNTLQVL 299
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLD 380
+ TD+AARGIDI L +V+N+D P P+ +VHR+GR RAG TG A S V +++ L D
Sbjct: 300 VATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLLKD 359
Query: 381 LHLFLSKPIRAAPSE 395
+ + R+ P E
Sbjct: 360 IEKLIK---RSVPQE 371
>gi|399927884|ref|ZP_10785242.1| Superfamily II DNA and RNA helicase [Myroides injenensis M09-0166]
Length = 371
Score = 251 bits (642), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 134/359 (37%), Positives = 214/359 (59%), Gaps = 4/359 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQ- 83
F+ L++S + +AI+ GY PT IQ + +P IL G D++ A+TG+GKT AF +P+L+
Sbjct: 3 FKDLSISSPILQAIQEVGYTTPTAIQVQAIPPILQGKDIIGCAQTGTGKTGAFAIPILEG 62
Query: 84 RLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
LN+ + V L+L PTR+LALQ K K+ ++T ++ L GG ++ Q + L QN
Sbjct: 63 LLNKQTSKKVVETLVLVPTRELALQVEKSFKDYSKHTAIKTIALFGGVALPPQIKALKQN 122
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
P I+IATPGRL+ + + + +S+ ++ +V DEAD + MGF + K+L + + RQTL
Sbjct: 123 PKIVIATPGRLLDLIQQ-KLVSISNISTLVLDEADQMLDMGFIHDIKKVLSYVPKKRQTL 181
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
FSAT+P+A+ +FA+ L P V + T + + + + + QE+K L +++ +
Sbjct: 182 FFSATMPAAIEKFARTILYQPIKVEVAAKTLTAKKVAQSVYFVNQEDKKKVLHTILKNN- 240
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
++ QTLIF TKH L ++ GL +G+ Q+AR ++ F+ LI T
Sbjct: 241 -AETQTLIFTRTKHGANNLVKYLQKVGLNSVAIHGNKSQNARVAALNNFKNNSINILIAT 299
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
D+AARGIDI L VIN++ P P+ +VHR+GR RAG +G A S + ++ LL++
Sbjct: 300 DIAARGIDIDKLPFVINYEIPNVPETYVHRIGRTGRAGLSGEAVSLCSPQEKKDLLNIQ 358
>gi|241959442|ref|XP_002422440.1| ATP-dependent rRNA helicase, putative; ribosomal RNA-processing
protein, putative [Candida dubliniensis CD36]
gi|223645785|emb|CAX40447.1| ATP-dependent rRNA helicase, putative [Candida dubliniensis CD36]
Length = 499
Score = 251 bits (642), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 145/394 (36%), Positives = 219/394 (55%), Gaps = 10/394 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ LNL P++ +I+ + PTPIQ + +P L G D++ +A+TGSGKTAAF +P+LQ
Sbjct: 88 FKELNLVPDLLESIESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQS 147
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L Q AL+L+PTR+LA Q LG LR S +VGG M Q +L + P
Sbjct: 148 LWH--AQQPYFALVLAPTRELAFQIKDTFDALGSSMGLRSSCIVGGMDMMDQARDLMRKP 205
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
II+ATPGR+M HL + SLK+++Y+V DEAD L M F L KIL + R T L
Sbjct: 206 HIIVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPALDKILKVIPIKRITYL 265
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+ + + + +A L +P V + + + +L + + K+ L++++ E I
Sbjct: 266 FSATMTNKIEKLQRASLHNPVKVSVSSKYQTADNLIQSMMLVNDGYKNTILIHLLNEFIG 325
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
+ ++F T H + +L R G +G + Q R +++F++ + L+ TD
Sbjct: 326 --KSIIVFTRTVAHAQRTALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNQANILVATD 383
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
VAARG+DIP +D VIN+D P K ++HRVGR ARAGR+G + S +T D+ L +
Sbjct: 384 VAARGLDIPSVDIVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEMYLRIENV 443
Query: 385 LSK--PIRAAPSEEEVLLDMDGVMSKIDQAIANG 416
L K P P +E +D + +D+A A
Sbjct: 444 LGKKLPKEDKPPKEI----LDALHVHVDKATAEA 473
>gi|451936748|ref|YP_007460602.1| superfamily II DNA and RNA helicase [Candidatus
Kinetoplastibacterium oncopeltii TCC290E]
gi|451777671|gb|AGF48646.1| superfamily II DNA and RNA helicase [Candidatus
Kinetoplastibacterium oncopeltii TCC290E]
Length = 478
Score = 251 bits (641), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 141/403 (34%), Positives = 222/403 (55%), Gaps = 10/403 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE + +S N+F A+K G+ PTP+Q T+P LSG D++ A+TGSGKTAAF++P+LQ
Sbjct: 3 FEKIGISSNIFSALKTAGFVSPTPVQEATIPQALSGKDLIVSAQTGSGKTAAFMLPILQI 62
Query: 85 LNQHVPQGGV--RALILSPTRDLALQTLKFTKELG-RYTDLRISLLVGGDSMESQFEELA 141
L+Q + + L+L+PTR+LALQ K T G LRI+ +VGG Q + L+
Sbjct: 63 LSQKPKSNNINPQVLVLTPTRELALQITKATASYGINMPWLRIATIVGGMPYREQIKALS 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ DI++ATPGRL+ + +SL ++ +V DEAD + MGF E + I+ +RQ
Sbjct: 123 KRVDILVATPGRLIDQMRS-NKVSLAGIQILVLDEADRMLDMGFIEDIETIVKNTPRDRQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
T+LFSAT+ ++ AK + P + L + ++ F E LL +
Sbjct: 182 TMLFSATIDESIDRLAKKMMNSPQHISLTSSKQKHDNITQKLFYADNNEHKVKLLNHVLN 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
S DQ +IF STK + L + G + +GDM+Q R +S+ + ++ L+
Sbjct: 242 EASLDQ-AIIFTSTKKGADKLAECLSDSGFSVAALHGDMNQRQRTRTISQLQKKQIRVLV 300
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TD+AARGIDI + + +N+D P + + +VHR+GR RAGR G+A S VT+E+ + +
Sbjct: 301 ATDIAARGIDINGISHAVNFDLPMQAEDYVHRIGRTGRAGRNGSALSLVTNEERHKIRRI 360
Query: 382 HLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFP 424
++ + I A E + ++ +SK+ N + Y P
Sbjct: 361 EKYIGQTILA-----ETIEGLEPKISKVSNDSPNKKNKYRVNP 398
>gi|375145001|ref|YP_005007442.1| DEAD/DEAH box helicase [Niastella koreensis GR20-10]
gi|361059047|gb|AEV98038.1| DEAD/DEAH box helicase domain protein [Niastella koreensis GR20-10]
Length = 419
Score = 251 bits (641), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 131/370 (35%), Positives = 218/370 (58%), Gaps = 8/370 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F++LN+ + RA+ +GY PTPIQ + +PL+L D+ ARTG+GKTAAF +P+LQ
Sbjct: 3 FQNLNVIEPILRALNNEGYTTPTPIQEQAIPLVLQRKDLFGCARTGTGKTAAFAIPVLQI 62
Query: 85 LNQH-----VPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139
L++ P ++ALIL+PTR+LA+Q + G++T LR +++ GG S ++Q
Sbjct: 63 LHEQKQAAKAPDNTIKALILTPTRELAIQIKESLDAYGKFTGLRHAVIFGGVSQQAQVTT 122
Query: 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSEN 199
L + DI++ATPGRL+ + + ++L S+ ++ DEAD + MGF + KI+ ++ +
Sbjct: 123 LRRGVDILVATPGRLLDLIDQ-RFVNLGSIRLLILDEADRMLDMGFVHDVKKIMAKVPKQ 181
Query: 200 RQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI 259
RQTL FSAT+ A+ + A L +P + + + + ++ A + + + K + L +++
Sbjct: 182 RQTLFFSATMAPAIRQLANTLLTNPVSIEVTPVSSTAETVRQAVYFVPKTSKQSLLKHLL 241
Query: 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319
+ + L+F TKH + + G+ + +G+ Q AR+ + +FR+R+
Sbjct: 242 AD--TDIPMALVFTRTKHGADRVAKELNNFGISAAAIHGNKSQQARQTALLKFRSRQIQV 299
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLL 379
L+ TD+AARGIDI L +VIN+D P + +VHR+GR RAG G A SF E+ AYL
Sbjct: 300 LVATDIAARGIDIDELSHVINYDLPEVAETYVHRIGRTGRAGANGMAVSFCDQEEKAYLR 359
Query: 380 DLHLFLSKPI 389
D+ + K +
Sbjct: 360 DIEKLIKKSV 369
>gi|296134828|ref|YP_003642070.1| DEAD/DEAH box helicase [Thiomonas intermedia K12]
gi|295794950|gb|ADG29740.1| DEAD/DEAH box helicase domain protein [Thiomonas intermedia K12]
Length = 533
Score = 251 bits (641), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 147/401 (36%), Positives = 227/401 (56%), Gaps = 14/401 (3%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L L + RA+ +GY VPTPIQ + +P++L+G D++A A+TG+GKTA F +PMLQR
Sbjct: 3 FQDLGLIEPLVRAVAEQGYTVPTPIQLQAIPVVLAGHDLLAAAQTGTGKTAGFTLPMLQR 62
Query: 85 LNQHVP----QGGV--RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138
L+ P +G + RALIL+PTR+LA Q + GR+ L + GG M+ Q
Sbjct: 63 LSGGEPARNAKGKIIPRALILTPTRELAAQVHENLAAYGRHLKLHSMAMYGGVGMQPQIN 122
Query: 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198
LA+ DI++ATPGRL+ H S+ ++ L +V+ +V DEAD + MGF + +I+ L +
Sbjct: 123 ALARGMDIVVATPGRLLDHQSQ-RNIDLSAVQMLVLDEADRMLDMGFVHDMRRIVALLPK 181
Query: 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258
RQ LLFSAT + A L +P V + + ++ F + +E K L+++
Sbjct: 182 QRQNLLFSATFSEEIKRLAGDFLVNPQQVAVARQNATADLVEQIVFPVDRERKRDMLVHL 241
Query: 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
IRE + QTL+F TKH L ++G+ + +G+ Q AR ++ F++ K
Sbjct: 242 IRER--NWPQTLVFTRTKHGANRLAEQLDKDGIVATGFHGNKTQSARLRALADFKSGKLQ 299
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
L+ TD+AARGIDI L V+N++ P P+ +VHR+GR RAG G A S V +++ +L
Sbjct: 300 VLVATDIAARGIDIDQLPVVVNYELPNIPEDYVHRIGRTGRAGSNGQAISLVCVDELGFL 359
Query: 379 LDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETI 419
D+ + PI +EV+ + + Q I G T+
Sbjct: 360 RDIEKLVRNPI-----TQEVIPGFEPDPNAKAQPIVMGRTV 395
>gi|366054164|ref|ZP_09451886.1| ATP-dependent RNA helicase DeaD [Lactobacillus suebicus KCTC 3549]
Length = 506
Score = 251 bits (641), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 140/379 (36%), Positives = 219/379 (57%), Gaps = 11/379 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L LS ++ +AIKR GY+ TPIQ +T+P++L G DV+ A+TG+GKTAAF +P+++
Sbjct: 3 FSELGLSDSLLKAIKRSGYEEATPIQEQTIPMVLDGQDVIGQAQTGTGKTAAFGLPIIEH 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
++ P ++ALI+SPTR+LA+QT + LG+ ++ ++ GG + Q L +P
Sbjct: 63 IDTENPD--IQALIISPTRELAIQTQEELYRLGKDKHAKVQVVYGGADIRRQINNLKNHP 120
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
I++ TPGRL+ H++ + L +++ +V DEAD + MGF E + I+ Q E RQTLL
Sbjct: 121 QILVGTPGRLLDHINR-RTVKLANLKTLVLDEADEMLNMGFLEDIESIIKQTPEKRQTLL 179
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P + + + DP V++ + + + R EK + MI +
Sbjct: 180 FSATMPPEIKKIGVQFMTDPKQVKIKAKELTTELIDQYYVRSRDFEKFDIMTRMI--DVQ 237
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
T++F TK V+ L+ G + +GD+ Q R ++RF+A K L+ TD
Sbjct: 238 DPDLTIVFGRTKRRVDELSKGLIARGYNAAGIHGDLTQQRRTQIMNRFKAGKIDILVATD 297
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
VAARG+DI + +V N+D P P +VHR+GR RAG G + +FVT +M YL ++
Sbjct: 298 VAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMDYLREIEK- 356
Query: 385 LSK----PIRAAPSEEEVL 399
L+K P++ PSEEE
Sbjct: 357 LTKVRMLPLK-PPSEEEAF 374
>gi|311280327|ref|YP_003942558.1| DEAD/DEAH box helicase [Enterobacter cloacae SCF1]
gi|308749522|gb|ADO49274.1| DEAD/DEAH box helicase domain protein [Enterobacter cloacae SCF1]
Length = 446
Score = 251 bits (641), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 138/369 (37%), Positives = 212/369 (57%), Gaps = 7/369 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F++L L+P + RA+ +GY+ PTPIQ++ +P +L G D++A A+TG+GKTA F +P+LQR
Sbjct: 3 FDTLGLNPEILRAVAEQGYREPTPIQKQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQR 62
Query: 85 LNQHVPQG----GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
L Q+ P +RALIL+PTR+LA Q + +E +Y ++R ++ GG S+ Q +L
Sbjct: 63 LVQNEPHAKGRRPIRALILTPTRELAAQVGENVREYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
DI++ATPGRL+ L + L SVE +V DEAD + MGF + ++L +L R
Sbjct: 123 RGGVDILVATPGRLLD-LEHQNALKLDSVEVLVLDEADRMLDMGFIHDIRRVLAKLPAKR 181
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
Q LLFSAT + A+ LR+P + + S + + ++ K L MI
Sbjct: 182 QNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIG 241
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
E + QQ L+F TKH L ++G+ + +G+ Q AR ++ F++ L
Sbjct: 242 E--GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVL 299
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLD 380
+ TD+AARG+DI L +V+N++ P P+ +VHR+GR RA TG A S V ++ L D
Sbjct: 300 VATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRD 359
Query: 381 LHLFLSKPI 389
+ L K I
Sbjct: 360 IERLLKKEI 368
>gi|259488879|tpe|CBF88686.1| TPA: ATP-dependent RNA helicase (Drs1), putative (AFU_orthologue;
AFUA_1G14990) [Aspergillus nidulans FGSC A4]
Length = 814
Score = 251 bits (641), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 145/374 (38%), Positives = 217/374 (58%), Gaps = 14/374 (3%)
Query: 9 ELKRREKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMAR 68
E K E S F+ NLS + R + + PTPIQ+KT+P+ L G D+V A
Sbjct: 284 EEKTDEDAATNSAKRSFQEFNLSRPILRGLAAVNFTNPTPIQQKTIPVALLGKDIVGSAV 343
Query: 69 TGSGKTAAFLVPMLQRL---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRIS 125
TGSGKTAAF+VP+L+RL + VP R IL PTR+LA+Q +L YTD+
Sbjct: 344 TGSGKTAAFVVPILERLLFRPRKVPTS--RVAILMPTRELAVQCYNVATKLATYTDITFC 401
Query: 126 LLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGF 185
LVGG S+ Q L + PD+IIATPGR + H+ ++ ++E +V DEAD + GF
Sbjct: 402 QLVGGFSLREQENVLKKRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGF 461
Query: 186 AEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLA--F 243
A++L++IL + ++RQT+LFSAT+ ++ + + GL P VRL VDTK + + L F
Sbjct: 462 ADELNEILTTIPKSRQTMLFSATMTDSVDKLIRVGLNRP--VRLMVDTKKNTAVTLVQEF 519
Query: 244 FTL---RQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDM 300
L R++++ LL++ +E + + ++F K + ++F GL+ + +G M
Sbjct: 520 VRLRPGREDKRLGYLLHLCKEVYTG--RVIVFFRQKKEAHRVRIVFGLLGLKAAELHGSM 577
Query: 301 DQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARA 360
Q+ R V FR FL+ TD+A+RG+DI ++ VIN++ P +I+VHRVGR ARA
Sbjct: 578 SQEQRIKSVESFRDGNVNFLLATDLASRGLDIKGVETVINYEAPQSHEIYVHRVGRTARA 637
Query: 361 GRTGTAFSFVTSED 374
GR+G A + D
Sbjct: 638 GRSGRACTIAAEPD 651
>gi|392947743|ref|ZP_10313371.1| ATP-dependent RNA helicase [Lactobacillus pentosus KCA1]
gi|334881219|emb|CCB82055.1| ATP-dependent RNA helicase [Lactobacillus pentosus MP-10]
gi|339637663|emb|CCC16621.1| ATP-dependent RNA helicase [Lactobacillus pentosus IG1]
gi|392437023|gb|EIW14919.1| ATP-dependent RNA helicase [Lactobacillus pentosus KCA1]
Length = 526
Score = 251 bits (641), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 130/356 (36%), Positives = 209/356 (58%), Gaps = 9/356 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L LS ++ +A++R GY+ TPIQ +T+P++L G DV+ A+TG+GKTAAF +P+LQR
Sbjct: 3 FTELGLSDSLLKAVQRAGYEEATPIQAETIPMVLEGKDVIGQAQTGTGKTAAFALPILQR 62
Query: 85 L--NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
L N H ++AL++SPTR+LA+QT + LG+ ++ ++ GG + Q L Q
Sbjct: 63 LDFNNH----NIQALVVSPTRELAIQTQEEIFRLGKDERAKVQVVYGGADIRRQIRNLKQ 118
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
NP +I+ TPGRL+ H+ + L V+ +V DEAD + MGF E + I+ Q+ + RQT
Sbjct: 119 NPQVIVGTPGRLLDHIRR-GTVKLDHVKMLVLDEADEMLNMGFLEDIESIIKQVPDERQT 177
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
+LFSAT+P + +++PH V++ + + + ++ EK + +
Sbjct: 178 MLFSATMPPEIKRIGVQFMKEPHHVKIKSKEMTADTVDQYYVKAKEFEKFDIMTRLF--D 235
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
+ + + T++F TK V+ L+ G + +GD+ Q R + +F+A K L+
Sbjct: 236 VQAPELTIVFGRTKRRVDELSKGLEARGYNAAGIHGDLSQQRRTQIMRQFKAGKLDILVA 295
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
TDVAARG+D+ + +V N+D P P +VHR+GR RAG G + +FVT +M YL
Sbjct: 296 TDVAARGLDVSGVTHVYNYDIPQDPDSYVHRIGRTGRAGHKGVSLTFVTPNEMEYL 351
>gi|326473339|gb|EGD97348.1| ATP-dependent RNA helicase DRS1 [Trichophyton tonsurans CBS 112818]
Length = 700
Score = 251 bits (641), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 146/368 (39%), Positives = 219/368 (59%), Gaps = 15/368 (4%)
Query: 17 KKKSKSGG---FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGK 73
+ KS SG F++L+LS + R + G+ PTPIQRKT+P+ L G DVV A TGSGK
Sbjct: 287 ESKSTSGAPASFQNLSLSRPILRGLASVGFSTPTPIQRKTIPVALLGKDVVGGAVTGSGK 346
Query: 74 TAAFLVPMLQRL---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGG 130
T AF+VP+L+RL + VP R IL PTR+LA+Q +L +TD+ LVGG
Sbjct: 347 TGAFIVPILERLLYRPRKVPTS--RVAILMPTRELAVQCYNVATKLATFTDITFCQLVGG 404
Query: 131 DSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLH 190
S+ Q L + PD+IIATPGR + H+ ++ ++E +V DEAD + GFAE+L+
Sbjct: 405 FSLREQENILKKRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFAEELN 464
Query: 191 KILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTK--ISPDLKLAFFTLR- 247
+IL + ++RQT+LFSAT+ +++ + + GL P VRL VD+K L F LR
Sbjct: 465 EILTTIPKSRQTMLFSATMTNSVDKLIRVGLNKP--VRLMVDSKKQTVGTLVQEFVRLRP 522
Query: 248 -QEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARK 306
+E+K L + + + S+ + ++F K + ++F GL+ + +G M Q+ R
Sbjct: 523 GREDKRLGYLMFLCKTVYSN-RVIVFFRQKKEAHRVRIVFGLMGLKAAELHGSMSQEQRI 581
Query: 307 IHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTA 366
V FR K +L+ TD+A+RG+DI ++ VIN++ P +I++HRVGR ARAGR+G A
Sbjct: 582 KSVEDFRDAKVSYLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRA 641
Query: 367 FSFVTSED 374
+ D
Sbjct: 642 CTIAAEPD 649
>gi|343496282|ref|ZP_08734384.1| Superfamily II DNA and RNA helicase [Vibrio nigripulchritudo ATCC
27043]
gi|342821453|gb|EGU56230.1| Superfamily II DNA and RNA helicase [Vibrio nigripulchritudo ATCC
27043]
Length = 429
Score = 251 bits (641), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 137/369 (37%), Positives = 216/369 (58%), Gaps = 6/369 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F S +P V +A+ GY+ TPIQ+K +P+ G D+ A A+TG+GKTAAF +P++Q
Sbjct: 3 FSSQGFAPEVAKALTEIGYEKLTPIQQKAIPMARKGHDIFATAQTGTGKTAAFSLPVIQH 62
Query: 85 L---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L + +G R LIL+PTR+LA Q K +YTDL ++ + GG+ M SQ +L
Sbjct: 63 LLDSGKSPSKGTARGLILAPTRELAAQIADNIKAYTKYTDLNVAAVYGGNKMSSQVRQLE 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ DI++ATPGRL H+SE ++S+ ++E++VFDEAD + MGF + +I+ ++ Q
Sbjct: 123 KGVDILVATPGRLSEHMSE-GNVSVANLEFLVFDEADRILDMGFINAVREIMMEVETAPQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
++FSAT S L + A LR P + +D + + + + + QE K L +I
Sbjct: 182 IMMFSATTSSQLNQLASDILRKPKRISVDSENSTAATVAHVVYPVDQERKTELLSELIGR 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ QQ L+FV+ K + + +G++ +C+GD Q AR+ + F+ K ++
Sbjct: 242 --KNWQQVLVFVNYKETANEIVKELKLDGIKAVLCHGDKAQSARRRALDEFKEGKARVMV 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TDVAARG+DI L +VIN+D P + +VHR+GR RAG+ G A SFV+ E+ L+ +
Sbjct: 300 ATDVAARGLDIESLPHVINYDMPFLAEDYVHRIGRTGRAGKQGHAVSFVSREEELTLVQV 359
Query: 382 HLFLSKPIR 390
+ + IR
Sbjct: 360 ENLIKQRIR 368
>gi|239612877|gb|EEQ89864.1| 2-isopropylmalate synthase [Ajellomyces dermatitidis ER-3]
Length = 834
Score = 251 bits (641), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 138/355 (38%), Positives = 209/355 (58%), Gaps = 8/355 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F++ +LS + R + G+ PTPIQRKT+P+ L G DVV A TGSGKT AF++P+L+R
Sbjct: 313 FQAFSLSRPILRGLTSVGFTTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIIPILER 372
Query: 85 L---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L + VP R IL PTR+LA+Q +L +TD+ LVGG S+ Q L
Sbjct: 373 LLYRPRKVPTS--RVAILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENILK 430
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ PD+IIATPGR + H+ ++ ++E +V DEAD + GFA++L++IL + ++RQ
Sbjct: 431 KRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQ 490
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR--QEEKHAALLYMI 259
T+LFSAT+ + + + + GL P + +D + L F LR +E+K L ++
Sbjct: 491 TMLFSATMTNNVDKLIRVGLNRPVRLMVDAKKQTVGTLVQEFVRLRPGREDKRLGYLMVL 550
Query: 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319
+ I D + +IF K + ++F GL+ + +G M Q+ R V FR K F
Sbjct: 551 CKTIYKD-RVIIFFRAKKEAHRVRIIFGLMGLKAAELHGSMSQEQRIKSVESFRDGKVSF 609
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
L+ TDVA+RG+DI ++ VIN++ P +I++HRVGR ARAGR+G A + D
Sbjct: 610 LLATDVASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPD 664
>gi|354807813|ref|ZP_09041268.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus curvatus
CRL 705]
gi|354513709|gb|EHE85701.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus curvatus
CRL 705]
Length = 523
Score = 251 bits (641), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 134/355 (37%), Positives = 214/355 (60%), Gaps = 7/355 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L LS + +AI+R G++ TPIQ +T+PL L+G DV+ A+TG+GKTAAF +P+LQ
Sbjct: 3 FAELGLSEPIMKAIERAGFEEATPIQGETIPLALAGKDVIGQAQTGTGKTAAFGLPILQN 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L+ P ++ALI+SPTR+LA+QT + LGR ++ ++ GG + Q L +P
Sbjct: 63 LDLDNPN--IQALIISPTRELAIQTQEELYRLGRDRKAKVQVVYGGADIRRQIRSLKDHP 120
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
I++ TPGRL+ H++ + L V+ +V DEAD + MGF + + I+ Q+ + RQTLL
Sbjct: 121 QILVGTPGRLLDHINR-RTVKLDHVKTLVLDEADEMLDMGFVDDIESIIKQVPDQRQTLL 179
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQE-EKHAALLYMIREHI 263
FSATLP+ + + K+ + +P ++++ +++ DL ++ ++ EK + + +
Sbjct: 180 FSATLPAPIMKIGKSFMTNPEMIKVK-SKELTADLIDQYYVRAKDFEKFDIMTRLF--DV 236
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
S + TLIF TK V+ L + G +GD+ Q R + F+A + L+ T
Sbjct: 237 QSPELTLIFGRTKRRVDELTRGLKARGYNAEGIHGDLSQQKRMSVLKSFKAGRLDILVAT 296
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
DVAARG+DI + +V N+D P P +VHR+GR RAG++G + +FVT +M YL
Sbjct: 297 DVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGKSGVSVTFVTPNEMEYL 351
>gi|240274680|gb|EER38196.1| ATP-dependent RNA helicase drs1 [Ajellomyces capsulatus H143]
Length = 828
Score = 251 bits (641), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 138/355 (38%), Positives = 212/355 (59%), Gaps = 8/355 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F++ +LS + R + G+ PTPIQRKT+P+ L G DVV A TGSGKT AF++P+L+R
Sbjct: 306 FQAFSLSRPILRGLTFVGFTTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIIPILER 365
Query: 85 L---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L + VP R +IL PTR+LA+Q +L +TD+ LVGG S+ Q L
Sbjct: 366 LLYRPRKVPTS--RVVILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENILK 423
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ PD+IIATPGR + H+ ++ ++E +V DEAD + GFA++L++IL + ++RQ
Sbjct: 424 KRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQ 483
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR--QEEKHAALLYMI 259
T+LFSAT+ + + + + GL P + +D + L F LR +EEK L ++
Sbjct: 484 TMLFSATMTNNVDKLIRVGLNRPVRLMVDAKKQTVGTLIQEFVRLRPGREEKRLGYLIVL 543
Query: 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319
++I D + ++F +K + ++F GL+ + +G M Q+ R V FR K F
Sbjct: 544 CKNIYKD-RVIVFFRSKKEAHRVRIIFGLLGLKVTELHGSMSQEQRIKSVEGFRDGKVSF 602
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
L+ TDVA+RG+DI ++ VIN++ P +I++HRVGR ARAGR+G A + D
Sbjct: 603 LLATDVASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPD 657
>gi|326204124|ref|ZP_08193984.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
DSM 2782]
gi|325985635|gb|EGD46471.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
DSM 2782]
Length = 564
Score = 251 bits (641), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 137/377 (36%), Positives = 219/377 (58%), Gaps = 8/377 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L LS V AI G++ TPIQ +++P IL G D++ A+TG+GKT AF +P +++
Sbjct: 6 FKDLTLSDEVQHAIADMGFEEATPIQSQSIPYILEGNDLIGQAQTGTGKTCAFGIPAVEK 65
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD-LRISLLVGGDSMESQFEELAQN 143
++ H+ ++ L+L PTR+LA+Q+ + + + +Y D +RI + GG ++ Q L +
Sbjct: 66 IDSHI--DSIQVLVLCPTRELAIQSCEELRNVLKYKDGIRILPVYGGQPIDRQIMALKKR 123
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
P III TPGR+M H+ + + L+S++ +V DEAD + MGF E + IL ++ E+RQT+
Sbjct: 124 PQIIIGTPGRVMDHMRR-KTLKLESLKMIVLDEADEMLNMGFREDIDTILEKVPEDRQTI 182
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
LFSAT+P + E K +DP +++ P ++ + +++ K L +I
Sbjct: 183 LFSATMPKEILELTKKYQKDPVHIKIAHKELTVPSIEQYYLEVKESAKLEVLSRLI--DT 240
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+ + +L+F +TK V+ L + G +GDM Q+ R +S FR LI T
Sbjct: 241 NDIKLSLVFCNTKKRVDELTASLQSRGFSAEALHGDMRQEHRDKVMSLFRKGNFDILIAT 300
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHL 383
DVAARGID+ ++ V N+D P + +VHR+GR RAGRTG AF+F++ +M L D+
Sbjct: 301 DVAARGIDVDDVEAVFNYDLPNDEEYYVHRIGRTGRAGRTGKAFTFISGREMYKLRDIQR 360
Query: 384 FLSKPIRA--APSEEEV 398
+ I A PS EV
Sbjct: 361 YTKSTIVAMKPPSLNEV 377
>gi|186475195|ref|YP_001856665.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
phymatum STM815]
gi|184191654|gb|ACC69619.1| DEAD/DEAH box helicase domain protein [Burkholderia phymatum
STM815]
Length = 522
Score = 251 bits (641), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 138/375 (36%), Positives = 214/375 (57%), Gaps = 10/375 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+SL LS + RA+ GY PTPIQ++ +P +L+G D++A A+TG+GKTA F +P+LQR
Sbjct: 3 FDSLGLSEPLVRAVNELGYTSPTPIQQQAIPAVLNGGDLLAGAQTGTGKTAGFTLPILQR 62
Query: 85 LNQHVPQGG----VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
L P G VRALIL+PTR+LA Q + + G+Y L+ +++ GG + Q + L
Sbjct: 63 LLTMPPAPGGKRVVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIDAL 122
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
+ DI++ATPGRL+ H+ + + + L +E +V DEAD + MGF + ++L +L R
Sbjct: 123 RRGVDIVVATPGRLLDHMQQ-KTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPKR 181
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
Q LLFSAT + A + L P L+ + + + + ++ K L ++I+
Sbjct: 182 QNLLFSATFSDEIKALADSLLDAPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHLIK 241
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
+H + Q L+F TKH L ++G+ +G+ Q AR ++ F+ L
Sbjct: 242 QH--NWFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKNNTLQVL 299
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLD 380
+ TD+AARGIDI L +V+N+D P P+ +VHR+GR RAG TG A S V +++ L D
Sbjct: 300 VATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLLKD 359
Query: 381 LHLFLSKPIRAAPSE 395
+ + RA P E
Sbjct: 360 IEKLIK---RAVPQE 371
>gi|451812523|ref|YP_007448977.1| superfamily II DNA and RNA helicase [Candidatus
Kinetoplastibacterium galatii TCC219]
gi|451778425|gb|AGF49373.1| superfamily II DNA and RNA helicase [Candidatus
Kinetoplastibacterium galatii TCC219]
Length = 422
Score = 251 bits (641), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 134/353 (37%), Positives = 208/353 (58%), Gaps = 5/353 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE + ++ N+F A+K G+ PTP+Q T+P LSG D++ A+TGSGKTAAF++P+LQ
Sbjct: 3 FEKIGINSNIFSALKTAGFISPTPVQEATIPQALSGKDLIVSAQTGSGKTAAFMLPVLQM 62
Query: 85 LNQHVPQGGV--RALILSPTRDLALQTLKFTKELG-RYTDLRISLLVGGDSMESQFEELA 141
L+Q + + L+L+PTR+LALQ K T G LRI+ +VGG +Q + L+
Sbjct: 63 LSQKPKSNNINPQVLVLTPTRELALQITKATAAYGINMPWLRIATIVGGMPYRNQIKALS 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ DI++ATPGRL+ + +SL +++ +V DEAD + MGF E + I+ ++RQ
Sbjct: 123 KRVDILVATPGRLIDQMRS-NKVSLANIQTLVLDEADRMLDMGFIEDIETIVKNTPKDRQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
T+LFSAT+ ++A AK + +P + L + ++ F E LL +
Sbjct: 182 TMLFSATIDESIARLAKKMMNNPQHIALTSSKQKHDNITQKLFYADNNEHKVKLLNHVLN 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
S DQ +IF STK + L E G + +GDM+Q R +S+ + ++ L+
Sbjct: 242 ESSLDQ-AIIFTSTKKGADKLAECLSENGFAVAALHGDMNQRQRTRTISQLQKKQIRVLV 300
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
TD+AARGIDI + + +N+D P + + +VHR+GR RAGR G+A S VT+E+
Sbjct: 301 ATDIAARGIDINGISHAVNFDLPMQAEDYVHRIGRTGRAGRNGSALSLVTNEE 353
>gi|348564128|ref|XP_003467857.1| PREDICTED: probable ATP-dependent RNA helicase DDX27-like [Cavia
porcellus]
Length = 803
Score = 251 bits (641), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 159/455 (34%), Positives = 248/455 (54%), Gaps = 23/455 (5%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
+S F+ +NLS + +AI G+K PTPIQ+ +P+ L G D+ A A TG+GKTAAF +P
Sbjct: 223 ESLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALP 282
Query: 81 MLQRLNQHVPQGGV-RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139
+L+RL Q V R L+L PTR+L +Q TK+L ++ + L VGG ++SQ
Sbjct: 283 VLERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAA 342
Query: 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSEN 199
L PDI+IATPGRL+ HL L S+E ++ DEAD + F EQ+ +I+ S +
Sbjct: 343 LRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHH 402
Query: 200 RQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR--QEEKHAALLY 257
RQT+LFSAT+ + + A L++P + ++ +T ++P L+ F +R +E A++
Sbjct: 403 RQTMLFSATMTEEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVA 462
Query: 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKT 317
+ +D ++F TK +++L GL+ +G++ Q R + RF+ +
Sbjct: 463 ALLTRSFTD-HVMLFTQTKKQAHRMHILLGLLGLQVGELHGNLSQTQRLEALRRFKDEQI 521
Query: 318 MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAY 377
L+ TDVAARG+DI + VIN+ P K +VHRVGR ARAGR G + S V E+
Sbjct: 522 DILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKM 581
Query: 378 LLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVRE 437
L ++ P++A ++V+L + K+++ +Y V+ L ++ RE
Sbjct: 582 LKEIVKAAKAPVKARILPQDVILKFRDKIEKMEK------DVYA-----VLQLEAEE-RE 629
Query: 438 IIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIR 472
+ S A +N+ Q RL K K P KE R
Sbjct: 630 MQHSEAQINAAQ-------RLLEKGKEAPDKEPER 657
>gi|172061636|ref|YP_001809288.1| DEAD/DEAH box helicase [Burkholderia ambifaria MC40-6]
gi|171994153|gb|ACB65072.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MC40-6]
Length = 479
Score = 251 bits (641), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 134/370 (36%), Positives = 213/370 (57%), Gaps = 8/370 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FESL L+ + +A+ GY PTPIQ++ +P +L G D++A A+TG+GKTA F +P+LQR
Sbjct: 3 FESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQR 62
Query: 85 LNQHVPQG-----GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139
L+ + + VRALIL+PTR+LA Q + + +Y LR +++ GG S+ Q +
Sbjct: 63 LHTYYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDA 122
Query: 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSEN 199
L + DI++ATPGRL+ H+ + + + L +++ +V DEAD + MGF + ++L +L
Sbjct: 123 LKRGVDIVVATPGRLLDHMQQ-KTIDLSNLDILVLDEADRMLDMGFIHDIKRVLAKLPPQ 181
Query: 200 RQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI 259
RQ LLFSAT + A + L P L+ + + + + ++ K L ++I
Sbjct: 182 RQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAESVAQKIHPVDRDRKRELLTHLI 241
Query: 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319
REH + Q L+F TKH L ++G+ +G+ Q AR ++ F++
Sbjct: 242 REH--NWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKSSTLQV 299
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLL 379
L+ TD+AARGIDI L +V+N+D P P+ +VHR+GR RAG TG A S V ++ L
Sbjct: 300 LVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLR 359
Query: 380 DLHLFLSKPI 389
D+ + + I
Sbjct: 360 DIERLIKREI 369
>gi|373108568|ref|ZP_09522850.1| hypothetical protein HMPREF9712_00443 [Myroides odoratimimus CCUG
10230]
gi|423129762|ref|ZP_17117437.1| hypothetical protein HMPREF9714_00837 [Myroides odoratimimus CCUG
12901]
gi|371646685|gb|EHO12196.1| hypothetical protein HMPREF9712_00443 [Myroides odoratimimus CCUG
10230]
gi|371647785|gb|EHO13280.1| hypothetical protein HMPREF9714_00837 [Myroides odoratimimus CCUG
12901]
Length = 415
Score = 251 bits (641), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 137/356 (38%), Positives = 207/356 (58%), Gaps = 6/356 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPM--- 81
FE L L+ N+ RAI GYK PTPIQ+K +P IL+ D++ A+TG+GKTAAF +P+
Sbjct: 3 FEDLQLNKNILRAIDELGYKEPTPIQQKAIPFILAEKDLIGCAQTGTGKTAAFAMPIIHY 62
Query: 82 LQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L +L + LI++PTR+LA+Q ++ +YT++ L GG S++ Q E+L
Sbjct: 63 LHKLGNTKKAKKAKVLIVTPTRELAVQIGDNFEKYAKYTNVTYITLYGGMSIKPQIEQLN 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ D+II TPGRL+ L + + + L + ++V DEAD + MGF + + K++ NRQ
Sbjct: 123 KGADVIIGTPGRLLD-LYKQKHLDLDHLHFLVLDEADLMLDMGFIDDVKKLIQLTPSNRQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
TLLFSAT+P + E A L+ P V +D + + +K + + + +K L ++IR
Sbjct: 182 TLLFSATMPLPIRELAHEFLQKPEYVAVDPISSTAQSVKQKVYFVEKGDKKKLLYHIIRN 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
SD L+F TK + + ++ G+ +GDM Q AR+ + F+ ++T L+
Sbjct: 242 EKLSD--VLVFTRTKAGADTVVESLKKNGVNAEPFHGDMSQTARQAALDSFKNKETKVLV 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAY 377
TD+AARGIDI L VIN+D P P+ FVHR+GR RAG G A SF + Y
Sbjct: 300 ATDIAARGIDIDNLPVVINYDLPNIPETFVHRIGRTGRAGNDGVAISFCDKSEKTY 355
>gi|255722942|ref|XP_002546405.1| ATP-dependent rRNA helicase RRP3 [Candida tropicalis MYA-3404]
gi|240130922|gb|EER30484.1| ATP-dependent rRNA helicase RRP3 [Candida tropicalis MYA-3404]
Length = 483
Score = 251 bits (641), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 146/397 (36%), Positives = 223/397 (56%), Gaps = 16/397 (4%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ LNL P++ +I+ + PTPIQ +++P L G D++ +A+TGSGKTAAF +P+LQ
Sbjct: 70 FKELNLVPDLLESIENMKFTKPTPIQSESIPHALEGKDIIGLAQTGSGKTAAFAIPILQS 129
Query: 85 L-NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L + P G L+L+PTR+LA Q + LG LR S +VGG M Q +L +
Sbjct: 130 LWHAQQPYFG---LVLAPTRELAFQIKETFDALGSSMGLRSSCIVGGMDMMDQARDLMRK 186
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
P II+ATPGR+M HL + +LK+++Y+V DEAD L M F L KIL + R T
Sbjct: 187 PHIIVATPGRIMDHLEHTKGFTLKNLKYLVMDEADRLLDMDFGPALDKILKVIPTKRTTY 246
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
LFSAT+ + + + +A L +P V + + + +L + + K+ L++++ E +
Sbjct: 247 LFSATMTNKIEKLQRASLHNPVRVAVSSKYQTADNLVQSMMLVNDGYKNTILIHLLNEFM 306
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
S + ++F T H + +L R G +G + Q R +++F++ LI T
Sbjct: 307 S--KSIIVFTRTVAHAQRTALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNTANILIAT 364
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHL 383
DVAARG+DIP +D VIN+D P K ++HRVGR ARAGR+G + S +T D+ L +
Sbjct: 365 DVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYDLEMYLRIES 424
Query: 384 FLSKPIRAAPSEE----EVLLDMDGVMSKIDQAIANG 416
L + P E+ EVL D + +D+A A
Sbjct: 425 VLGYKL---PKEDKPPKEVL---DALHIHVDKATAEA 455
>gi|242782113|ref|XP_002479938.1| ATP-dependent RNA helicase , putative [Talaromyces stipitatus ATCC
10500]
gi|218720085|gb|EED19504.1| ATP-dependent RNA helicase , putative [Talaromyces stipitatus ATCC
10500]
Length = 478
Score = 251 bits (641), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 156/394 (39%), Positives = 218/394 (55%), Gaps = 12/394 (3%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L L P + A GYK PT IQ + +PL L D++ +A TGSGKTAAF +P+LQ
Sbjct: 54 FKDLGLIPQLCEACDTLGYKAPTAIQTEAIPLALQNRDLIGLAETGSGKTAAFALPILQA 113
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L PQ L+L+PTR+LA Q + + LG +R +LVGG M Q + + P
Sbjct: 114 LMDK-PQP-FFGLVLAPTRELAYQISEAFEALGSTISVRSVVLVGGMDMVPQAIAIGKRP 171
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
II+ATPGRL+ HL + SL+S++Y+V DEAD L M F + KIL L R+T L
Sbjct: 172 HIIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDMDFGPIIDKILKVLPRERRTFL 231
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTK----ISPDLKLAFFTLRQEEKHAALLYMIR 260
FSAT+ S + +A L +P +R+ V + +S L+ F + + K L++++
Sbjct: 232 FSATMSSKVEGLQRASLSNP--LRVSVSSNKYQTVSTLLQYYLF-IPHKHKDVHLIWLLN 288
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
EH+ Q +IF T H L +L R G +G + Q AR + +FR+R L
Sbjct: 289 EHVG--QSVIIFTRTVHETMRLTILARALGFGAIALHGQLSQSARLGALGKFRSRSRDIL 346
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLD 380
I TDVAARG+DIP +D V+N+D K VHR+GR ARAG++G A S VT D+ L
Sbjct: 347 IATDVAARGLDIPSVDLVLNYDLAADSKTHVHRIGRTARAGKSGKAISLVTQYDVEVWLR 406
Query: 381 LHLFLSKPIRAAPSE-EEVLLDMDGVMSKIDQAI 413
+ L + + E EEVL+ D V QAI
Sbjct: 407 IEKALDRKLPEYKVEKEEVLILSDRVAEAQRQAI 440
>gi|352516353|ref|YP_004885670.1| putative RNA helicase [Tetragenococcus halophilus NBRC 12172]
gi|348600460|dbj|BAK93506.1| putative RNA helicase [Tetragenococcus halophilus NBRC 12172]
Length = 505
Score = 251 bits (641), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 134/378 (35%), Positives = 215/378 (56%), Gaps = 9/378 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ LNLS + A+ + G++ TPIQ +T+PL + G DV+ A+TG+GKTAAF +PML +
Sbjct: 3 FKELNLSQELLDAVTKIGFEEATPIQAETIPLAMEGKDVIGQAQTGTGKTAAFGLPMLDK 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
++ Q ++ L+++PTR+LA+QT + LG+ +R+ + GG + Q +L NP
Sbjct: 63 IDGKKKQ--IQGLVIAPTRELAIQTQEELFRLGKEKKIRVQAVYGGADIGRQIRQLKDNP 120
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
I++ TPGR++ H++ + L +VE +V DEAD + MGF E + KI+ Q+ E RQTLL
Sbjct: 121 QIVVGTPGRMLDHINR-RTLKLSTVETLVLDEADEMLNMGFLEDIEKIIAQVPEQRQTLL 179
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P + ++D H VR+ + + + + EK + + +
Sbjct: 180 FSATMPKEIKSIGVKFMKDSHHVRIKAKEMTADSIDQYYVKAKDYEKFDIMTRLF--DVQ 237
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
+ TLIF TK V+ + G + +GD+ Q R + F+ + L+ TD
Sbjct: 238 LPELTLIFARTKRRVDEIARGLEARGYKAEGIHGDLSQQKRMNILQSFKKGRLDILVATD 297
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
VAARG+DI + +V N+D P P+ +VHR+GR RAG++G + +FVT +M YL +
Sbjct: 298 VAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGMSVTFVTPNEMNYLHVIENL 357
Query: 385 LSK---PIRAAPSEEEVL 399
K P+R PS++E
Sbjct: 358 TKKRMTPMR-PPSDKEAF 374
>gi|327352045|gb|EGE80902.1| 2-isopropylmalate synthase [Ajellomyces dermatitidis ATCC 18188]
Length = 834
Score = 251 bits (641), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 138/355 (38%), Positives = 209/355 (58%), Gaps = 8/355 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F++ +LS + R + G+ PTPIQRKT+P+ L G DVV A TGSGKT AF++P+L+R
Sbjct: 313 FQAFSLSRPILRGLTSVGFTTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIIPILER 372
Query: 85 L---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L + VP R IL PTR+LA+Q +L +TD+ LVGG S+ Q L
Sbjct: 373 LLYRPRKVPTS--RVAILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENILK 430
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ PD+IIATPGR + H+ ++ ++E +V DEAD + GFA++L++IL + ++RQ
Sbjct: 431 KRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQ 490
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR--QEEKHAALLYMI 259
T+LFSAT+ + + + + GL P + +D + L F LR +E+K L ++
Sbjct: 491 TMLFSATMTNNVDKLIRVGLNRPVRLMVDAKKQTVGTLVQEFVRLRPGREDKRLGYLMVL 550
Query: 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319
+ I D + +IF K + ++F GL+ + +G M Q+ R V FR K F
Sbjct: 551 CKTIYKD-RVIIFFRAKKEAHRVRIIFGLMGLKAAELHGSMSQEQRIKSVESFRDGKVSF 609
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
L+ TDVA+RG+DI ++ VIN++ P +I++HRVGR ARAGR+G A + D
Sbjct: 610 LLATDVASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPD 664
>gi|158522360|ref|YP_001530230.1| DEAD/DEAH box helicase domain-containing protein [Desulfococcus
oleovorans Hxd3]
gi|158511186|gb|ABW68153.1| DEAD/DEAH box helicase domain protein [Desulfococcus oleovorans
Hxd3]
Length = 425
Score = 251 bits (641), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 138/350 (39%), Positives = 211/350 (60%), Gaps = 6/350 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE+ +P V IK GY VPTPIQ + + ++ DV+ MA+TG+GKTAAF++P+L R
Sbjct: 3 FEAFGFNPQVAAGIKEAGYAVPTPIQVQAIAPVMENRDVMGMAQTGTGKTAAFVLPILHR 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L + +GG+RALIL+PTR+LA QT + LGR T L+ + + GG + Q ++L +
Sbjct: 63 LMKG-QKGGIRALILAPTRELAEQTHQAIGVLGRKTGLKSATVYGGVGITPQIQKL-KKV 120
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
DI++A PGRL+ H+ +L +E +V DEAD LF MGF + KIL L + RQTLL
Sbjct: 121 DIVVACPGRLLDHIGR-RTANLSKLEVLVIDEADQLFDMGFFPDIKKILTHLPKQRQTLL 179
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P+ + + A L++P V++ + + + A + + Q K A LL ++++ +
Sbjct: 180 FSATMPAEIRKLAADILQNPATVQVGNEAP-ADTVSHALYPVAQHLKTAFLLDLLKQ--T 236
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
+ L+F TKH + L+ G + G++ Q R+ + FR L+ TD
Sbjct: 237 QARSVLVFTRTKHRAKNLDQKLAGAGFRSTSLQGNLSQVKRQAALDGFRKGTFQILVATD 296
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
+AARGID+ + +VIN+D P P+ ++HR+GR RA TG AF+F+T ED
Sbjct: 297 IAARGIDVTRVSHVINYDVPSTPEAYIHRIGRTGRATCTGEAFTFITGED 346
>gi|258563228|ref|XP_002582359.1| hypothetical protein UREG_07132 [Uncinocarpus reesii 1704]
gi|237907866|gb|EEP82267.1| hypothetical protein UREG_07132 [Uncinocarpus reesii 1704]
Length = 836
Score = 251 bits (641), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 138/360 (38%), Positives = 212/360 (58%), Gaps = 8/360 (2%)
Query: 20 SKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLV 79
S S F++ NLS + R + G+ PTPIQRK +P+ L G D+V A TGSGKTAAF++
Sbjct: 309 SSSSTFQNFNLSRPILRGLAAVGFSAPTPIQRKAIPVGLLGKDLVGGAVTGSGKTAAFII 368
Query: 80 PMLQRL---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQ 136
P+L+RL + VP R +IL PTR+LA+Q +L YTD+ LVGG S+ Q
Sbjct: 369 PILERLLYRPRKVPTS--RVVILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQ 426
Query: 137 FEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL 196
L Q PD+IIATPGR + H+ ++ ++E +V DEAD + GFA++L++IL +
Sbjct: 427 ENVLKQRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILTTI 486
Query: 197 SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR--QEEKHAA 254
++RQT+LFSAT+ ++ + + GL P + +D + L F LR +E K
Sbjct: 487 PKSRQTMLFSATMTDSVDKLIRVGLNRPVRLMVDAKKQTVGTLVQEFVRLRPGREGKRMG 546
Query: 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRA 314
L ++ + + ++ + ++F K ++F GL+ + +G M Q+ R V FR
Sbjct: 547 YLVLLCQTVYTN-RVIVFFRQKKEAHRARIVFGLLGLKAAELHGSMSQEQRIHAVEAFRD 605
Query: 315 RKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
K FL+ TD+A+RG+DI +++VIN++ P +I++HRVGR ARAGR+G A + D
Sbjct: 606 GKVPFLLATDLASRGLDIKGVESVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPD 665
>gi|348026760|ref|YP_004766565.1| ATP-dependent RNA helicase DeaD family protein [Megasphaera
elsdenii DSM 20460]
gi|341822814|emb|CCC73738.1| ATP-dependent RNA helicase DeaD family protein [Megasphaera
elsdenii DSM 20460]
Length = 526
Score = 251 bits (641), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 129/377 (34%), Positives = 221/377 (58%), Gaps = 5/377 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F++LN+S + RA+ G++ PTPIQ +++P+ +SG+D++ A+TG+GKTAA+ +P+L++
Sbjct: 5 FQNLNISEVIIRALNEMGFEEPTPIQAESIPVAMSGSDMIGQAQTGTGKTAAYGIPVLEK 64
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
+ + P ++ ++LSPTR+LA+Q + L ++T+++ + GG ME Q L + P
Sbjct: 65 ILKAEPSKDIQTVVLSPTRELAMQVAEELNHLAQFTNIQALPIYGGQDMERQLRRLRKCP 124
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
II+ATPGRL+ H+ + L + +V DEAD + MGF + ++ I+ RQTLL
Sbjct: 125 QIIVATPGRLIDHMKR-GTIDLSHITTIVLDEADEMLDMGFIDDINIIMAATPNTRQTLL 183
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P + + A+ L DP ++R+ ++ ++ + +K L ++ +
Sbjct: 184 FSATMPKPIQQLAETFLHDPLIIRMKAKEVTMDLIEQSYIEVPDRQKFDILCRLL--DLQ 241
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
+IFV TK V+ ++ ++ G +GD+ Q R + +FR + L+ TD
Sbjct: 242 EPDLAIIFVRTKRRVDEVSEALKKRGYSAEGIHGDLTQAKRDTVIRQFREKTIDILVATD 301
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
VAARG+DI + +V N+D P P+ +VHRVGR RAG++G A +FV +M +L +
Sbjct: 302 VAARGLDISGVTHVFNYDLPQDPESYVHRVGRTGRAGQSGEATTFVIPREMEHLRTIERL 361
Query: 385 LSKPI--RAAPSEEEVL 399
+ + I R AP+ E L
Sbjct: 362 IKRRITRRKAPTFSEAL 378
>gi|395829165|ref|XP_003787731.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
DDX27 [Otolemur garnettii]
Length = 795
Score = 251 bits (641), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 148/429 (34%), Positives = 240/429 (55%), Gaps = 16/429 (3%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ +NLS + +AI G+K PTPIQ+ +P+ L G D+ A A TG+GKTAAF +P+L+R
Sbjct: 219 FQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLER 278
Query: 85 LNQHVPQGGV-RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L Q V R L+L PTR+L +Q T++L ++ ++ L VGG ++SQ L
Sbjct: 279 LIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAA 338
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
PDI+IATPGRL+ HL L S+E ++ DEAD + F EQ+ +I+ S +RQT+
Sbjct: 339 PDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRLCSHHRQTM 398
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR--QEEKHAALLYMIRE 261
LFSAT+ + + A L++P + ++ +T ++P L+ F +R +E A++ +
Sbjct: 399 LFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLT 458
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+D ++F TK +++L GL+ +G++ Q R + RF+ + L+
Sbjct: 459 RTFTD-HVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILV 517
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TDVAARG+DI + VIN+ P K +VHRVGR ARAGR G + S V E+ L ++
Sbjct: 518 ATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERRMLKEI 577
Query: 382 HLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDS 441
P++A ++V+L + K+++ +Y V+ L ++ +E+ S
Sbjct: 578 VKAAKAPVKARILPQDVILKFRDKIEKMEK------DVYA-----VLQLEAEE-KEMQQS 625
Query: 442 SADLNSLQR 450
A +N+ +R
Sbjct: 626 EAQINTAKR 634
>gi|223634733|sp|A5DQF1.2|RRP3_PICGU RecName: Full=ATP-dependent rRNA helicase RRP3
gi|190348857|gb|EDK41404.2| hypothetical protein PGUG_05502 [Meyerozyma guilliermondii ATCC
6260]
Length = 475
Score = 251 bits (641), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 141/370 (38%), Positives = 209/370 (56%), Gaps = 4/370 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F LNL P + AI++ Y PTPIQ +P L G D++ +A+TGSGKTAAF +P+LQ
Sbjct: 66 FSELNLVPELMEAIEKLKYTKPTPIQSGAIPHALEGKDIIGLAQTGSGKTAAFAIPILQS 125
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L + Q AL+L+PTR+LA Q + LG +R +VGG M Q +L + P
Sbjct: 126 LWE--AQRPYYALVLAPTRELAYQIKETFDALGSGMGVRSVCIVGGMDMMDQARDLMRKP 183
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
I++ATPGR+M HL + SLKS++Y+V DEAD L M F L KIL + R T L
Sbjct: 184 HILVATPGRIMDHLENTKGFSLKSLQYLVMDEADRLLDMDFGPALDKILKVIPTKRTTYL 243
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+ + +A+ +A L +P V + + + +L + + K+ L++++ E +
Sbjct: 244 FSATMTNKIAKLQRASLHEPVKVAVSNKYQTADNLVQSMMLVSDGYKNTFLIHLLNEFMG 303
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
+ ++F T H + +L R G +G + Q R +++F++ K LI TD
Sbjct: 304 --KSIIVFTRTCAHTQRSTLLARILGFSAVPLHGQLTQSQRLGSLNKFKSGKANILIATD 361
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
VAARG+DIP +D VIN+D P K ++HRVGR ARAG++G + S VT D+ L +
Sbjct: 362 VAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGKSGKSISLVTQYDLEMYLRIESV 421
Query: 385 LSKPIRAAPS 394
L + PS
Sbjct: 422 LGFKLPKDPS 431
>gi|171317466|ref|ZP_02906657.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MEX-5]
gi|171097362|gb|EDT42206.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MEX-5]
Length = 480
Score = 251 bits (641), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 134/370 (36%), Positives = 213/370 (57%), Gaps = 8/370 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FESL L+ + +A+ GY PTPIQ++ +P +L G D++A A+TG+GKTA F +P+LQR
Sbjct: 3 FESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQR 62
Query: 85 LNQHVPQG-----GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139
L+ + + VRALIL+PTR+LA Q + + +Y LR +++ GG S+ Q +
Sbjct: 63 LHTYYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQIDA 122
Query: 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSEN 199
L + DI++ATPGRL+ H+ + + + L +++ +V DEAD + MGF + ++L +L
Sbjct: 123 LKRGVDIVVATPGRLLDHMQQ-KTIDLSNLDILVLDEADRMLDMGFIHDIKRVLAKLPPQ 181
Query: 200 RQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI 259
RQ LLFSAT + A + L P L+ + + + + ++ K L ++I
Sbjct: 182 RQNLLFSATFSDEIKSLADSLLDSPALIEVARRNTTAESVAQKIHPVDRDRKRELLTHLI 241
Query: 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319
REH + Q L+F TKH L ++G+ +G+ Q AR ++ F++
Sbjct: 242 REH--NWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKSSTLQV 299
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLL 379
L+ TD+AARGIDI L +V+N+D P P+ +VHR+GR RAG TG A S V ++ L
Sbjct: 300 LVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLR 359
Query: 380 DLHLFLSKPI 389
D+ + + I
Sbjct: 360 DIERLIKREI 369
>gi|420155719|ref|ZP_14662575.1| DEAD/DEAH box helicase [Clostridium sp. MSTE9]
gi|394758696|gb|EJF41558.1| DEAD/DEAH box helicase [Clostridium sp. MSTE9]
Length = 595
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 137/370 (37%), Positives = 217/370 (58%), Gaps = 8/370 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ LNL + +A++ + Y+ P+PIQ K +P L G DV+ A+TG+GKTAAF VP+LQ
Sbjct: 3 FQELNLIAPILKALQEEQYEAPSPIQEKAIPPALLGRDVLGCAQTGTGKTAAFAVPILQT 62
Query: 85 LNQH--VPQG---GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139
LN VP+G +R+LIL+PTR+LA+Q + + GRY LR ++ GG S Q
Sbjct: 63 LNAQPPVPKGQKRAIRSLILTPTRELAIQIGESLRAYGRYLPLRSEVIFGGVSQVPQVNS 122
Query: 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSEN 199
L + DI++ATPGRL + L + + L +V+ V DEAD + MGF + +++ +L +
Sbjct: 123 LNRGVDILVATPGRL-NDLIQQGFIDLGAVQIFVLDEADRMLDMGFIHDVKRVITRLPKQ 181
Query: 200 RQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI 259
+QTL FSAT+P + E + L +P V + + + ++ + + + + K L+ ++
Sbjct: 182 KQTLFFSATMPPEITELVDSLLVEPIKVAVAPVSSTADAIEQSVYFVDKGNKPKLLIDLL 241
Query: 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319
+ S + L+F TKH + + ++ +G+ Q AR+ +S F+AR+
Sbjct: 242 KH--SEIESALVFTRTKHGADRVARELARAKIQAQAIHGNKSQTARQQALSSFKARQIRV 299
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLL 379
L+ TD+AARGIDI L +VIN+D P P+ +VHR+GR RAG GTA SF ++ YL
Sbjct: 300 LVATDIAARGIDIDELSHVINYDLPNVPETYVHRIGRTGRAGLDGTAISFCNIDEKPYLK 359
Query: 380 DLHLFLSKPI 389
D+ + KP+
Sbjct: 360 DIEALIGKPV 369
>gi|374323237|ref|YP_005076366.1| RNA helicase exp9 (Exported protein 9) [Paenibacillus terrae
HPL-003]
gi|357202246|gb|AET60143.1| RNA helicase exp9 (Exported protein 9) [Paenibacillus terrae
HPL-003]
Length = 529
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 140/399 (35%), Positives = 231/399 (57%), Gaps = 14/399 (3%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F NL P V AI G++ TPIQ +++PL L G D++ A+TG+GKTAAF +P++ +
Sbjct: 4 FAEFNLEPKVLEAITELGFEEATPIQSQSIPLALQGRDMIGQAQTGTGKTAAFGIPLISK 63
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
++++ +RALI++PTR+LA+Q + ++L R+ LR + GG + Q L + P
Sbjct: 64 ISRN--DDKIRALIMAPTRELAIQVAEEIEKLSRFKGLRTLPIYGGQDIVRQIRALKKKP 121
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
III TPGRL+ H++ + + L+ V VV DEAD + MGF E + IL Q+ + RQT+L
Sbjct: 122 QIIIGTPGRLLDHINR-KTIKLEDVNTVVLDEADEMLDMGFMEDIQSILKQVPDERQTML 180
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P + A+ L++P V + +P + A+ + + +K AL +I +
Sbjct: 181 FSATMPPNIKRLAEQFLKNPEHVSVIPKQVSAPLIDQAYIEVPERQKFEALSRLI--DME 238
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
S + ++F TK V+ L ++ G +GD+ Q+ R + +FR L+ TD
Sbjct: 239 SPELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLVATD 298
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL-----L 379
VAARG+D+ + +V+N+D P P+ +VHR+GR RAG+ G A+SFVT ++ +L +
Sbjct: 299 VAARGLDVSGVSHVVNFDLPQDPESYVHRIGRTGRAGKEGEAWSFVTPREIDHLHFIERV 358
Query: 380 DLHLFLSKPIRAAPSEEEVLLDMDGVMS-KIDQAIANGE 417
H KP+ P+ E L +++ ++ +A+ +GE
Sbjct: 359 TRHRIARKPL---PTLAEALEGKQRIIAERLLEAVESGE 394
>gi|420249963|ref|ZP_14753195.1| DNA/RNA helicase, superfamily II [Burkholderia sp. BT03]
gi|398063077|gb|EJL54833.1| DNA/RNA helicase, superfamily II [Burkholderia sp. BT03]
Length = 513
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 137/375 (36%), Positives = 212/375 (56%), Gaps = 10/375 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+SL LS + RA+ GY PTPIQ++ +P +L G D++A A+TG+GKTA F +P+LQR
Sbjct: 3 FDSLGLSEQLVRAVNELGYTSPTPIQQQAIPAVLKGGDLLAGAQTGTGKTAGFTLPILQR 62
Query: 85 LNQHVPQGG----VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
L P G VRALIL+PTR+LA Q + + G+Y L+ +++ GG + Q + L
Sbjct: 63 LLTMPPAPGGKRVVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIDAL 122
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
+ DI++ATPGRL+ H+ + + + L +E +V DEAD + MGF + ++L +L R
Sbjct: 123 RRGVDIVVATPGRLLDHMQQ-KTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPPKR 181
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
Q LLFSAT + A L P L+ + + + + ++ K L ++I+
Sbjct: 182 QNLLFSATFSDEIKALADNLLDSPALIEVARRNTTAESVAQKIHPVDRDRKREMLTHLIK 241
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
+H + Q L+F TKH L ++G+ +G+ Q AR ++ F+ L
Sbjct: 242 QH--NWFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKNNTLQVL 299
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLD 380
+ TD+AARGIDI L +V+N+D P P+ +VHR+GR RAG TG A S V +++ L D
Sbjct: 300 VATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLLKD 359
Query: 381 LHLFLSKPIRAAPSE 395
+ + R+ P E
Sbjct: 360 IEKLIK---RSVPQE 371
>gi|254555590|ref|YP_003062007.1| ATP-dependent RNA helicase [Lactobacillus plantarum JDM1]
gi|300769652|ref|ZP_07079536.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
plantarum subsp. plantarum ATCC 14917]
gi|308179612|ref|YP_003923740.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp.
plantarum ST-III]
gi|380031534|ref|YP_004888525.1| ATP-dependent RNA helicase [Lactobacillus plantarum WCFS1]
gi|418274186|ref|ZP_12889684.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp.
plantarum NC8]
gi|254044517|gb|ACT61310.1| ATP-dependent RNA helicase [Lactobacillus plantarum JDM1]
gi|300492805|gb|EFK27989.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
plantarum subsp. plantarum ATCC 14917]
gi|308045103|gb|ADN97646.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp.
plantarum ST-III]
gi|342240777|emb|CCC78011.1| ATP-dependent RNA helicase [Lactobacillus plantarum WCFS1]
gi|376009752|gb|EHS83078.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp.
plantarum NC8]
Length = 528
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 134/397 (33%), Positives = 220/397 (55%), Gaps = 8/397 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L LS ++ +A+ R GY+ TPIQ +T+P++L G DV+ A+TG+GKTAAF +P+LQR
Sbjct: 3 FTELGLSDSLLKAVNRAGYEEATPIQAETIPMVLEGKDVIGQAQTGTGKTAAFALPILQR 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L+ ++AL++SPTR+LA+QT + LG+ ++ ++ GG + Q L QNP
Sbjct: 63 LD--FDNHNIQALVVSPTRELAIQTQEEIFRLGKDERAKVQVVYGGADIRRQIRNLKQNP 120
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
+I+ TPGRL+ H+ + L V+ +V DEAD + MGF E + I+ Q+ + RQT+L
Sbjct: 121 QVIVGTPGRLLDHIRR-GTVKLDHVKMLVLDEADEMLNMGFLEDIESIIKQVPDERQTML 179
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P + +++PH V++ + + + ++ EK + + +
Sbjct: 180 FSATMPPEIKRIGVQFMKEPHHVKIKSKEMTADTVDQYYVKAKEFEKFDIMTRLF--DVQ 237
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
+ + T++F TK V+ L+ G + +GD+ Q R + +F+A K L+ TD
Sbjct: 238 APELTIVFGRTKRRVDELSKGLEARGYNAAGIHGDLSQQRRTQIMRQFKAGKLDILVATD 297
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
VAARG+D+ + +V N+D P P +VHR+GR RAG G + +FVT +M YL +
Sbjct: 298 VAARGLDVSGVTHVYNYDIPQDPDSYVHRIGRTGRAGHKGVSLTFVTPNEMEYLRVIEKL 357
Query: 385 LSK---PIRAAPSEEEVLLDMDGVMSKIDQAIANGET 418
K P++ E + + +D +A T
Sbjct: 358 TKKRMLPLKPPTESEAFAGQLAAAEANVDSLVAKTST 394
>gi|423133418|ref|ZP_17121065.1| hypothetical protein HMPREF9715_00840 [Myroides odoratimimus CIP
101113]
gi|423329024|ref|ZP_17306831.1| hypothetical protein HMPREF9711_02405 [Myroides odoratimimus CCUG
3837]
gi|371648682|gb|EHO14169.1| hypothetical protein HMPREF9715_00840 [Myroides odoratimimus CIP
101113]
gi|404603424|gb|EKB03078.1| hypothetical protein HMPREF9711_02405 [Myroides odoratimimus CCUG
3837]
Length = 415
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 137/356 (38%), Positives = 207/356 (58%), Gaps = 6/356 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPM--- 81
FE L L+ N+ RAI GYK PTPIQ+K +P IL+ D++ A+TG+GKTAAF +P+
Sbjct: 3 FEDLQLNKNILRAIDELGYKEPTPIQQKAIPFILAEKDLIGCAQTGTGKTAAFAMPIIHY 62
Query: 82 LQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L +L + LI++PTR+LA+Q ++ +YT++ L GG S++ Q E+L
Sbjct: 63 LHKLGNTKKAKKAKVLIVTPTRELAVQIGDNFEKYAKYTNVTYITLYGGMSIKPQIEQLN 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ D+II TPGRL+ L + + + L + ++V DEAD + MGF + + K++ NRQ
Sbjct: 123 KGADVIIGTPGRLLD-LYKQKHLDLDHLHFLVLDEADLMLDMGFIDDVKKLIQLTPSNRQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
TLLFSAT+P + E A L+ P V +D + + +K + + + +K L ++IR
Sbjct: 182 TLLFSATMPLPIRELAHEFLQKPEYVAVDPISSTAQSVKQKVYFVEKGDKKKLLYHIIRN 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
SD L+F TK + + ++ G+ +GDM Q AR+ + F+ ++T L+
Sbjct: 242 EKLSD--VLVFTRTKAGADTVVESLKKNGVNAEPFHGDMSQTARQAALDSFKNKETKVLV 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAY 377
TD+AARGIDI L VIN+D P P+ FVHR+GR RAG G A SF + Y
Sbjct: 300 ATDIAARGIDIDNLPVVINYDLPNIPETFVHRIGRTGRAGNDGVAISFCDKSEKTY 355
>gi|340372039|ref|XP_003384552.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like
[Amphimedon queenslandica]
Length = 451
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 148/403 (36%), Positives = 231/403 (57%), Gaps = 8/403 (1%)
Query: 1 MSLVSSKAELKRREKQKK---KSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLI 57
M+ EL EKQ + KS+ F + ++ + ++ + G+ PT IQR+ +P+
Sbjct: 1 MASAEEDTELSGTEKQIEEDGKSEGLTFSDIGITSVLCQSCEEMGWTTPTDIQREAIPVA 60
Query: 58 LSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117
L G DV+ +A TGSGKT AF +P+LQ L + + AL+L+PTR+LA Q + + LG
Sbjct: 61 LEGRDVIGLAETGSGKTGAFSLPILQSLLDTPTR--LFALVLTPTRELAFQISEQFEALG 118
Query: 118 RYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEA 177
++ +++VGG M +Q LA+ P ++IATPGRL+ HL + SL+SV+Y+V DEA
Sbjct: 119 GRIGVKCAVVVGGVDMMTQALALAKKPHVVIATPGRLVDHLENTKGFSLRSVKYLVMDEA 178
Query: 178 DCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISP 237
D + M F E++ KIL LS R+T L+SAT+ + + +A L +P V + +
Sbjct: 179 DRILNMDFGEEVDKILKVLSRERRTYLYSATMTKKVQKLQRASLHNPIKVEVSTKYQTVD 238
Query: 238 DLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCY 297
L+ ++ + + K L+ ++ E + ++F ST + + V+ R GL Y
Sbjct: 239 KLQQSYIFIPSKYKDCYLVSILNEF--AGNSFMVFCSTCANTQRTAVMLRNLGLPAIPLY 296
Query: 298 GDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRA 357
G M Q R +S+F+++ LI TDVA+RG+DIP +D VIN+D P K ++HRVGR
Sbjct: 297 GKMAQMKRLGALSKFKSKSRSILIATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRT 356
Query: 358 ARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPS-EEEVL 399
ARAGR+G A +FVT D+ + + K + P+ EEEVL
Sbjct: 357 ARAGRSGRAITFVTQYDVELYQRIESLIGKKLPLFPTVEEEVL 399
>gi|126664485|ref|ZP_01735469.1| DNA and RNA helicase [Marinobacter sp. ELB17]
gi|126630811|gb|EBA01425.1| DNA and RNA helicase [Marinobacter sp. ELB17]
Length = 444
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 136/364 (37%), Positives = 212/364 (58%), Gaps = 4/364 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F SL LS + RA +GY+ P+PIQ K +P +L+G DV+A A+TG+GKTA F++P+LQ
Sbjct: 3 FSSLGLSEPLVRATLDQGYETPSPIQLKAIPAVLAGKDVMAAAQTGTGKTAGFVLPILQM 62
Query: 85 LNQHVPQG-GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L Q+ G G R LIL+PTR+LA Q RY R +++ GG + Q +L +
Sbjct: 63 LEQNPRTGKGPRVLILTPTRELAAQVHDSVNLYSRYVPTRAAVVFGGVKINPQMMKLRKG 122
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
D+++ATPGRLM L + + VE++V DEAD + MGF + KIL L RQ+L
Sbjct: 123 LDVLVATPGRLMD-LYQQNAVRFNEVEFLVLDEADRMLDMGFIRDIRKILAMLPAKRQSL 181
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
LFSAT + + AK L DP + + V + + + + + Q +K A L ++R++
Sbjct: 182 LFSATFSNEIRTLAKGLLNDPVQIDVAVRNTTAESVIQSVYPVDQSQKTALLSKLVRDN- 240
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
S +Q L+F TKH L ++G+ + +G+ Q AR ++ F+ L+ T
Sbjct: 241 -SWEQVLVFTRTKHGANRLTEKLGKDGITAAAIHGNKSQGARTRALAEFKQGDIRVLVAT 299
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHL 383
D+AARG+DI L V+N++ P P+ +VHR+GR RAG +G A S V++++++ L+ +
Sbjct: 300 DIAARGLDIKQLPQVVNFELPNVPEDYVHRIGRTGRAGESGHALSLVSADELSMLVGIEK 359
Query: 384 FLSK 387
+ K
Sbjct: 360 LIKK 363
>gi|114564231|ref|YP_751745.1| DEAD/DEAH box helicase [Shewanella frigidimarina NCIMB 400]
gi|114335524|gb|ABI72906.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
NCIMB 400]
Length = 433
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 141/387 (36%), Positives = 222/387 (57%), Gaps = 16/387 (4%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FES + +P + RAI GY+ TPIQ++ +P I G DV+A A+TG+GKTAAF +P+LQR
Sbjct: 3 FESFSFAPEILRAIAECGYQSMTPIQQQAIPAIRRGEDVLASAQTGTGKTAAFALPILQR 62
Query: 85 LNQHVPQ---GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
+ + + R LIL+PTR+LA Q ++ +L + + GG +++Q ++L
Sbjct: 63 MCDNPKETMPSNTRTLILTPTRELAAQVADNISAYSKHLNLTVLTIYGGVKIDTQSQKLK 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ D+I+ATPGRL+ H+ ++SL +VE++V DEAD + MGF+ + KIL +++ RQ
Sbjct: 123 RGADVIVATPGRLLEHIVAC-NLSLSNVEFLVLDEADRMLDMGFSADIKKILQAVNKKRQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
+LFSAT S + + A L P ++ +D + + + + Q K +I E
Sbjct: 182 NMLFSATFSSEVKKLANDMLEKPKVITVDKQNTTADTVSQVVYPVEQRRKRE----LISE 237
Query: 262 HISSD--QQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319
I + QQ L+F +T+ + L +G+ V +G+ Q +R+ + F K
Sbjct: 238 LIGTKNWQQVLVFTATRDAADKLVKELNLDGIPSGVVHGEKAQGSRRRALREFVEGKIRV 297
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLL 379
L+ T+VAARG+DI L+ V+N+D P + +VHR+GR RAG+TG A SFV+ E+ L
Sbjct: 298 LVATEVAARGLDIKNLEYVVNYDLPFLAEDYVHRIGRTGRAGKTGVAISFVSREEERTLA 357
Query: 380 DLHLFLSKPIR--AAPSEE----EVLL 400
D+ + +PIR P E EVLL
Sbjct: 358 DIEKLIGQPIRRVTVPGYEVGSREVLL 384
>gi|254481835|ref|ZP_05095078.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
HTCC2148]
gi|214037964|gb|EEB78628.1| DEAD/DEAH box helicase domain protein [marine gamma proteobacterium
HTCC2148]
Length = 435
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 141/367 (38%), Positives = 214/367 (58%), Gaps = 9/367 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L LS + RAI++KGY P+PIQ K +P +LSG DV+A A+TG+GKTAAF +P+LQR
Sbjct: 3 FDQLGLSSALLRAIEKKGYSEPSPIQAKAIPAVLSGKDVMAAAQTGTGKTAAFTLPILQR 62
Query: 85 LNQHVP--QGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
LN P +RALIL+PTR+LA Q + G +T L+ +++ GG + SQ +L +
Sbjct: 63 LNASAPIKPHRIRALILTPTRELAAQVAQSVSTYGLHTPLKSAVVFGGVKINSQIAQLRR 122
Query: 143 NPDIIIATPGRLM--HHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
DI+IATPGRL+ H EV+ +E +V DEAD + MGF + +IL L R
Sbjct: 123 GVDILIATPGRLLDLHGQGEVD---FGELEILVLDEADRMLDMGFIHDIRRILKLLPAER 179
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
Q LLFSAT + + E K L+DP V + + ++ + + ++ K A L ++
Sbjct: 180 QNLLFSATFAAEIRELTKKFLQDPIEVEVASRNATADKVEQWVYPVDKKRKGALLRELVE 239
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
E + Q L+F TKH L + G+E + +G+ Q AR + F++ + L
Sbjct: 240 EKCWT--QVLVFSRTKHGANRLAQQLDKAGIEATAIHGNKSQGARTRALEDFKSGRLRVL 297
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLD 380
+ TD+AARG+DI L V+N+D P + +VHR+GR RAG +G A+S V ++++ L D
Sbjct: 298 VATDIAARGLDIAQLPQVVNFDLPNVAQDYVHRIGRTGRAGASGKAYSLVCADEIKQLND 357
Query: 381 LHLFLSK 387
+ + +
Sbjct: 358 IEQLIQR 364
>gi|357013855|ref|ZP_09078854.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
elgii B69]
Length = 433
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 136/369 (36%), Positives = 221/369 (59%), Gaps = 7/369 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE L L P + +A+ ++ Y PTPIQ + +P +L+G D+ A+TG+GKTAAFL+P++Q
Sbjct: 3 FEQLKLIPPILKALAKENYTQPTPIQEQAIPPVLAGRDLFGCAQTGTGKTAAFLLPIIQL 62
Query: 85 LN--QHVPQGG--VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
L+ Q P G +R+LIL+PTR+LA+Q K GR+ +LR +++VGG S ++Q + L
Sbjct: 63 LSAQQRRPSGKRVIRSLILTPTRELAIQISDNFKAYGRFLNLRSAVIVGGVSQKAQEQAL 122
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
Q DI+IATPGRL+ +++ L+ V+ +V DEAD + MGF + +I+ +L R
Sbjct: 123 EQGMDILIATPGRLIDLMNQ-GFADLRHVQILVLDEADRMLDMGFIHDMRRIIAKLPAKR 181
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTL FSAT+P + + L +P + + + + +K + + + + K L+ +++
Sbjct: 182 QTLFFSATMPPEITSLVDSLLTNPMKIEITPVSSTAERIKQSLYFVDKPNKLPLLIDLLQ 241
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
+ S + L+F TKH + L + + +GD Q+AR+ ++ F+ T L
Sbjct: 242 D--KSIESALVFTRTKHGADRLVKGLTKATITAQAIHGDKSQNARQAALNNFKQGVTRML 299
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLD 380
+ TD+AARGIDI L +VIN++ P P+ +VHR+GR RAG +G A SF E++ YL D
Sbjct: 300 VATDIAARGIDIEELSHVINYNLPNIPETYVHRIGRTGRAGLSGIAISFCEYEEIPYLKD 359
Query: 381 LHLFLSKPI 389
+ + + I
Sbjct: 360 IEKLIKQKI 368
>gi|319762158|ref|YP_004126095.1| dead/deah box helicase domain-containing protein [Alicycliphilus
denitrificans BC]
gi|317116719|gb|ADU99207.1| DEAD/DEAH box helicase domain protein [Alicycliphilus denitrificans
BC]
Length = 564
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 134/371 (36%), Positives = 217/371 (58%), Gaps = 9/371 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE L L+P + +A++ +GY+ PTPIQ + +P +L+G D++A A+TG+GKTAAF +PML R
Sbjct: 3 FEELKLAPAILQAVQEQGYQNPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPMLHR 62
Query: 85 LNQ-HVPQG-----GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138
L Q P GVRAL+L+PTR+LA Q + + G++ D++ +++ GG M Q E
Sbjct: 63 LAQGQAPTSRFGGRGVRALVLTPTRELAAQVEESVRTYGKHLDIKSTVIFGGVGMNPQIE 122
Query: 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198
+ + D+++ATPGRL+ L + + L VE +V DEAD + MGF + K+L L +
Sbjct: 123 RIKRGVDVLVATPGRLLD-LQQQGFIDLSQVEILVLDEADRMLDMGFIHDVKKVLALLPK 181
Query: 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258
+Q+LLFSAT + E A L DP +++ + + + +K LL++
Sbjct: 182 AKQSLLFSATFSDEIRELAAGLLNDPQSIQVTPRNTTVQRISQVIHPVGRGKKKQVLLHI 241
Query: 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
I+EH S Q L+F TK + + G++ +G+ Q AR + F++ +
Sbjct: 242 IQEHDWS--QVLVFTRTKFGANNVAEYLTKHGVQAMALHGNKSQSARTQALEGFKSGQIR 299
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
L+ TD+AARGIDI L +V+N++ P P+ +VHR+GR RAG+ G A S V ++ ++
Sbjct: 300 ALVATDIAARGIDIDDLPHVVNYEIPNVPEDYVHRIGRTGRAGKEGQAVSLVCMDEEGFM 359
Query: 379 LDLHLFLSKPI 389
+++ F + I
Sbjct: 360 MEIERFTKQEI 370
>gi|423343393|ref|ZP_17321106.1| hypothetical protein HMPREF1077_02536 [Parabacteroides johnsonii
CL02T12C29]
gi|409215468|gb|EKN08468.1| hypothetical protein HMPREF1077_02536 [Parabacteroides johnsonii
CL02T12C29]
Length = 425
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 133/371 (35%), Positives = 221/371 (59%), Gaps = 6/371 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE L L + +A+K++ Y PTPIQ + +PL+L G+D++ A+TG+GKTAAF +P++Q+
Sbjct: 9 FEQLELIEPIRKALKKEKYTTPTPIQAEAIPLVLDGSDLLGCAQTGTGKTAAFSIPIIQK 68
Query: 85 LNQHVP---QGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
+ + + + G++AL+L+PTR+LA+Q + G YT ++ +++ GG + Q + L
Sbjct: 69 IEEQISSRRKPGIKALVLTPTRELAIQIGESFTAYGCYTHVKHTVIFGGVGQKPQTDALE 128
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ D++IATPGRL+ LS+ + L ++EY V DEAD + MGF + +IL L + RQ
Sbjct: 129 RGVDVLIATPGRLLDLLSQ-GFIRLDTLEYFVLDEADRMLDMGFIHDIKRILPLLPKKRQ 187
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
+L FSAT+P + A L +P V + + + + + + + EK L ++ +
Sbjct: 188 SLFFSATMPPEIERLAGTILHEPEKVEVTPVSSTVDTIDQSVYFVEKVEKINLLKNLLED 247
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
S + L+F TK+ + + + + G+ +GD Q+AR+ +S F+ LI
Sbjct: 248 R--SLESVLVFTRTKYGADKVARVLNKSGIGAEAIHGDKGQNARQRALSSFKDHTLRVLI 305
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TD+A+RGID+ L +VIN+D P P+ +VHR+GR RAGR+G AFSF E++ YL D+
Sbjct: 306 ATDIASRGIDVDHLSHVINYDLPNVPETYVHRIGRTGRAGRSGIAFSFCDVEEVPYLKDI 365
Query: 382 HLFLSKPIRAA 392
+ K + A
Sbjct: 366 QKLIGKDVPVA 376
>gi|336406430|ref|ZP_08587085.1| hypothetical protein HMPREF0127_04398 [Bacteroides sp. 1_1_30]
gi|345509853|ref|ZP_08789440.1| hypothetical protein BSAG_03518 [Bacteroides sp. D1]
gi|335934634|gb|EGM96619.1| hypothetical protein HMPREF0127_04398 [Bacteroides sp. 1_1_30]
gi|345454658|gb|EEO51805.2| hypothetical protein BSAG_03518 [Bacteroides sp. D1]
Length = 382
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 131/371 (35%), Positives = 222/371 (59%), Gaps = 6/371 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ LN++ + +AI KGY VPTPIQ K +P L+ D++ A+TG+GKTA+F +P++Q
Sbjct: 11 FKELNITEPILKAIGEKGYTVPTPIQEKAIPPALAKRDILGCAQTGTGKTASFAIPIIQH 70
Query: 85 LN---QHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L + + G++ALIL+PTR+LALQ + + ++T +R ++ GG + Q + L
Sbjct: 71 LQLDKEAARRQGIKALILTPTRELALQISECIDDYSKHTRIRHGVIFGGVNQRPQVDLLR 130
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ DI++ATPGRL+ +S+ + L +++Y V DEAD + MGF + +IL +L + +Q
Sbjct: 131 KGIDILVATPGRLLDLMSQ-GHIHLDTIQYFVLDEADRMLDMGFIHDIKRILPKLPKEKQ 189
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
TL FSAT+P ++ K+ L++P + + + +K + + ++EK L+ ++ +
Sbjct: 190 TLFFSATMPDSIISLTKSLLKNPVKIYITPKSSTVDSIKQLVYFVEKKEKSQLLISILSK 249
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ DQ LIF TKH+ + + + + G+ +G+ Q AR+ + F++ KT ++
Sbjct: 250 --AEDQSVLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRVMV 307
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TD+A+RGIDI L VIN+D P P+ +VHR+GR RAG GTA +F + E+ + D+
Sbjct: 308 ATDIASRGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNMGTALTFCSQEERKLVNDI 367
Query: 382 HLFLSKPIRAA 392
K + A
Sbjct: 368 QKLTGKKLNKA 378
>gi|149926712|ref|ZP_01914972.1| Helicase [Limnobacter sp. MED105]
gi|149824641|gb|EDM83857.1| Helicase [Limnobacter sp. MED105]
Length = 539
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 140/370 (37%), Positives = 211/370 (57%), Gaps = 10/370 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L P++ +AI +GY PTPIQ K +P++++G DV+ A+TG+GKTA F +P+L R
Sbjct: 22 FADFALHPDIQKAIDAQGYTQPTPIQAKAIPVVMTGVDVMGAAQTGTGKTAGFSLPILNR 81
Query: 85 L------NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138
L N + VRALIL+PTR+LA Q ++T LR +++ GG + Q +
Sbjct: 82 LMPLATENTSPARHPVRALILTPTRELADQVAANVHTYAKFTPLRSTVVYGGVDINPQIQ 141
Query: 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198
L + +++IATPGRL+ H+ + + ++L V+ +V DEAD + MGF L +I+ L +
Sbjct: 142 TLRRGVELVIATPGRLLDHVQQ-KSINLGQVQVLVLDEADRMLDMGFLPDLQRIINLLPK 200
Query: 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE-KHAALLY 257
RQ LLFSAT + + AK+ + P L+ + S ++K F L EE K A+ +
Sbjct: 201 TRQNLLFSATFSPEIQKLAKSFMVSPTLIEVARRNATSENIKQVIFALDSEEDKRMAVCH 260
Query: 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKT 317
+I+ S Q ++F +TK L +EG+ + +GD Q R + F+A +
Sbjct: 261 LIQSKALS--QVIVFSNTKLGTARLARHLEKEGVSSTAIHGDKTQIERTKSLEAFKAGEV 318
Query: 318 MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAY 377
L+ TDVAARG+DI L VIN+D P P+ +VHR+GR RAG GTA+SFV D
Sbjct: 319 TVLVATDVAARGLDIADLPCVINYDLPTTPEDYVHRIGRTGRAGAKGTAYSFVVKRDERA 378
Query: 378 LLDLHLFLSK 387
L D+ + K
Sbjct: 379 LKDIEKLIGK 388
>gi|146310946|ref|YP_001176020.1| ATP-dependent RNA helicase RhlE [Enterobacter sp. 638]
gi|145317822|gb|ABP59969.1| DEAD/DEAH box helicase domain protein [Enterobacter sp. 638]
Length = 462
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 139/369 (37%), Positives = 210/369 (56%), Gaps = 7/369 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F++L L+P + RA+ +GY PTPIQ++ +P +L G D++A A+TG+GKTA F +P+LQR
Sbjct: 3 FDTLGLNPEILRAVAEQGYLEPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQR 62
Query: 85 LNQHVPQG----GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
L Q+ P VRALIL+PTR+LA Q + +E RY D+R ++ GG S+ Q +L
Sbjct: 63 LVQNEPHAKGRRPVRALILTPTRELAAQIGENVREYSRYLDIRSLVVFGGVSINPQMMKL 122
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
D+++ATPGRL+ L + L VE +V DEAD + MGF + ++L +L R
Sbjct: 123 RSGVDVLVATPGRLLD-LEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPAKR 181
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
Q LLFSAT + A+ LR+P + + S + + ++ K L MI
Sbjct: 182 QNLLFSATFSDEIKGLAEKLLRNPLEIEVARRNTASEQVSQYVHFVDKKRKRELLSQMIG 241
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
E + QQ L+F TKH L ++G+ + +G+ Q AR ++ F++ L
Sbjct: 242 E--GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVL 299
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLD 380
+ TD+AARG+DI L +V+N++ P P+ +VHR+GR RA TG A S V ++ L D
Sbjct: 300 VATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLHD 359
Query: 381 LHLFLSKPI 389
+ L K I
Sbjct: 360 IERLLKKEI 368
>gi|238028570|ref|YP_002912801.1| ATP-dependent RNA helicase [Burkholderia glumae BGR1]
gi|237877764|gb|ACR30097.1| ATP-dependent RNA helicase [Burkholderia glumae BGR1]
Length = 483
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 136/370 (36%), Positives = 209/370 (56%), Gaps = 8/370 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F SL L+ + RA+ GY PTPIQ + +P +L G D++A A+TG+GKTA F +P+LQR
Sbjct: 3 FASLGLAEPLVRAVNELGYNEPTPIQTQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQR 62
Query: 85 LNQHVPQGG-----VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139
LN P VRALIL+PTR+LA Q + + G+Y LR +++ GG S+ Q +
Sbjct: 63 LNAFQPANANGKRAVRALILTPTRELAAQVEESVRAYGKYLKLRSTVMFGGVSINPQIDA 122
Query: 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSEN 199
L + DI++ATPGRL+ H+ + + + + ++ +V DEAD + MGF + ++L +L
Sbjct: 123 LKRGVDIVVATPGRLLDHMQQ-KTIDVSQLDILVLDEADRMLDMGFIHDIKRVLAKLPAK 181
Query: 200 RQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI 259
RQ LLFSAT + A + L P L+ + + + + ++ K L ++I
Sbjct: 182 RQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAETIAQKIHPVDRDRKREMLTHLI 241
Query: 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319
REH + Q L+F TKH L ++G+ +G+ Q AR +S F+A
Sbjct: 242 REH--NWFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALSEFKAGTLQV 299
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLL 379
L+ TD+AARGIDI L +V+N++ P P+ +VHR+GR RAG G A S V ++ L
Sbjct: 300 LVATDIAARGIDIDQLPHVVNYELPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKPLLR 359
Query: 380 DLHLFLSKPI 389
D+ + + I
Sbjct: 360 DIERLIKREI 369
>gi|423334318|ref|ZP_17312098.1| ATP-dependent RNA helicase [Lactobacillus reuteri ATCC 53608]
gi|4409804|gb|AAD20136.1| autoaggregation-mediating protein [Lactobacillus reuteri ATCC
53608]
gi|337728126|emb|CCC03217.1| ATP-dependent RNA helicase [Lactobacillus reuteri ATCC 53608]
Length = 497
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 139/398 (34%), Positives = 226/398 (56%), Gaps = 10/398 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L LS ++ +AIKR GY+ TPIQ +T+P++L G DV+ A+TG+GKTAAF +P+++
Sbjct: 3 FSELGLSDSLLKAIKRSGYEEATPIQEQTIPMVLEGKDVIGQAQTGTGKTAAFGLPIIEN 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
++ P ++A+I+SPTR+LA+QT + LG+ +R+ ++ GG + Q + L Q+P
Sbjct: 63 VDTENPN--IQAIIISPTRELAIQTQEELYRLGKDKHVRVQVVYGGADIRRQIKSLKQHP 120
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
I++ TPGRL H++ + L ++ +V DEAD + MGF E + I+ + ++RQTLL
Sbjct: 121 QILVGTPGRLRDHINR-HTVKLDHIKTLVLDEADEMLNMGFLEDIESIIKETPDDRQTLL 179
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFT-LRQEEKHAALLYMIREHI 263
FSAT+P + + DP VR+ +++ DL ++ R EK + +I +
Sbjct: 180 FSATMPPEIKRIGVQFMSDPETVRIKA-KELTTDLVDQYYVRARDYEKFDIMTRLI--DV 236
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
T++F TK V+ L+ G + +GD+ QD R + +F+ + L+ T
Sbjct: 237 QDPDLTIVFGRTKRRVDELSKGLIARGYNAAGIHGDLTQDKRSKIMWKFKNNELDILVAT 296
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHL 383
DVAARG+DI + +V N+D P P +VHR+GR RAG G + +FVT +M YL ++
Sbjct: 297 DVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMDYLHEIEK 356
Query: 384 FLSK---PIRAAPSEEEVLLDMDGVMSKIDQAIANGET 418
P++ +EE + + ID+ IA T
Sbjct: 357 LTRVRMLPLKPPTAEEAFKGQVASAFNDIDELIAQDST 394
>gi|302654026|ref|XP_003018826.1| hypothetical protein TRV_07145 [Trichophyton verrucosum HKI 0517]
gi|291182505|gb|EFE38181.1| hypothetical protein TRV_07145 [Trichophyton verrucosum HKI 0517]
Length = 814
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 145/366 (39%), Positives = 218/366 (59%), Gaps = 15/366 (4%)
Query: 19 KSKSGG---FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTA 75
KS SG F++L+LS + R + G+ PTPIQRKT+P+ L G DVV A TGSGKT
Sbjct: 290 KSTSGAPASFQNLSLSRPILRGLASVGFSTPTPIQRKTIPVALLGKDVVGGAVTGSGKTG 349
Query: 76 AFLVPMLQRL---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
AF+VP+L+RL + VP R IL PTR+LA+Q +L +TD+ LVGG S
Sbjct: 350 AFIVPILERLLYRPRKVPTS--RVAILMPTRELAVQCYNVATKLATFTDITFCQLVGGFS 407
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
+ Q L + PD+IIATPGR + H+ ++ ++E +V DEAD + GFAE+L++I
Sbjct: 408 LREQENILKKRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFAEELNEI 467
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTK--ISPDLKLAFFTLR--Q 248
L + ++RQT+LFSAT+ +++ + + GL P VRL VD+K L F LR +
Sbjct: 468 LTTIPKSRQTMLFSATMTNSVDKLIRVGLNKP--VRLMVDSKKQTVGTLVQEFVRLRPGR 525
Query: 249 EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIH 308
E+K L + + + ++ + ++F K + ++F GL+ + +G M Q+ R
Sbjct: 526 EDKRLGYLMFLCKTVYTN-RVIVFFRQKKEAHRVRIVFGLMGLKAAELHGSMSQEQRIKS 584
Query: 309 VSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFS 368
V FR K +L+ TD+A+RG+DI ++ VIN++ P +I++HRVGR ARAGR+G A +
Sbjct: 585 VEDFRDAKVSYLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACT 644
Query: 369 FVTSED 374
D
Sbjct: 645 IAAEPD 650
>gi|218261592|ref|ZP_03476346.1| hypothetical protein PRABACTJOHN_02014 [Parabacteroides johnsonii
DSM 18315]
gi|218223947|gb|EEC96597.1| hypothetical protein PRABACTJOHN_02014 [Parabacteroides johnsonii
DSM 18315]
Length = 419
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 133/371 (35%), Positives = 221/371 (59%), Gaps = 6/371 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE L L + +A+K++ Y PTPIQ + +PL+L G+D++ A+TG+GKTAAF +P++Q+
Sbjct: 3 FEQLELIEPIRKALKKEKYTTPTPIQAEAIPLVLDGSDLLGCAQTGTGKTAAFSIPIIQK 62
Query: 85 LNQHVP---QGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
+ + + + G++AL+L+PTR+LA+Q + G YT ++ +++ GG + Q + L
Sbjct: 63 IEEQISSRCKPGIKALVLTPTRELAIQIGESFTAYGCYTHVKHTVIFGGVGQKPQTDALE 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ D++IATPGRL+ LS+ + L ++EY V DEAD + MGF + +IL L + RQ
Sbjct: 123 RGVDVLIATPGRLLDLLSQ-GFIRLDTLEYFVLDEADRMLDMGFIHDIKRILPLLPKKRQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
+L FSAT+P + A L +P V + + + + + + + EK L ++ +
Sbjct: 182 SLFFSATMPPEIERLAGTILHEPEKVEVTPVSSTVDTIDQSVYFVEKVEKINLLKNLLED 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
S + L+F TK+ + + + + G+ +GD Q+AR+ +S F+ LI
Sbjct: 242 R--SLESVLVFTRTKYGADKVARVLNKSGIGAEAIHGDKGQNARQRALSSFKDHTLRVLI 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TD+A+RGID+ L +VIN+D P P+ +VHR+GR RAGR+G AFSF E++ YL D+
Sbjct: 300 ATDIASRGIDVDHLSHVINYDLPNVPETYVHRIGRTGRAGRSGIAFSFCDVEEVPYLKDI 359
Query: 382 HLFLSKPIRAA 392
+ K + A
Sbjct: 360 QKLIGKDVPVA 370
>gi|448820186|ref|YP_007413348.1| ATP-dependent RNA helicase [Lactobacillus plantarum ZJ316]
gi|448273683|gb|AGE38202.1| ATP-dependent RNA helicase [Lactobacillus plantarum ZJ316]
Length = 528
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 134/397 (33%), Positives = 220/397 (55%), Gaps = 8/397 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L LS ++ +A+ R GY+ TPIQ +T+P++L G DV+ A+TG+GKTAAF +P+LQR
Sbjct: 3 FTELGLSDSLLKAVNRAGYEEATPIQAETIPMVLEGKDVIGQAQTGTGKTAAFALPILQR 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L+ ++AL++SPTR+LA+QT + LG+ ++ ++ GG + Q L QNP
Sbjct: 63 LD--FDNHNIQALVVSPTRELAIQTQEEIFRLGKDERAKVQVVYGGADIRRQIRNLKQNP 120
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
+I+ TPGRL+ H+ + L V+ +V DEAD + MGF E + I+ Q+ + RQT+L
Sbjct: 121 QVIVGTPGRLLDHIRR-GTVKLDHVKMLVLDEADEMLNMGFLEDIESIIKQVPDERQTML 179
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P + +++PH V++ + + + ++ EK + + +
Sbjct: 180 FSATMPPEIKRIGVQFMKEPHHVKIKSKEMTADTVDQYYVKAKEFEKFDIMTRLF--DVQ 237
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
+ + T++F TK V+ L+ G + +GD+ Q R + +F+A K L+ TD
Sbjct: 238 APELTIVFGRTKRRVDELSKGLEARGYNAAGIHGDLSQQRRTQIMRQFKAGKLDILVATD 297
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
VAARG+D+ + +V N+D P P +VHR+GR RAG G + +FVT +M YL +
Sbjct: 298 VAARGLDVSGVTHVYNYDIPQDPDSYVHRIGRTGRAGHKGVSLTFVTPNEMEYLRVIEKL 357
Query: 385 LSK---PIRAAPSEEEVLLDMDGVMSKIDQAIANGET 418
K P++ E + + +D +A T
Sbjct: 358 TKKRMLPLKPPTESEAFAGQLAAAEANVDSLVAKTST 394
>gi|355571182|ref|ZP_09042434.1| DEAD/DEAH box helicase domain protein [Methanolinea tarda NOBI-1]
gi|354825570|gb|EHF09792.1| DEAD/DEAH box helicase domain protein [Methanolinea tarda NOBI-1]
Length = 441
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 142/365 (38%), Positives = 217/365 (59%), Gaps = 6/365 (1%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K+ F L++ + RAI+ G++ PTPIQ +P+I G D+V A TG+GKTAAF +P
Sbjct: 2 KTISFADLDVPEPLLRAIRDLGFEEPTPIQSLAIPVIREGHDMVGQAHTGTGKTAAFGIP 61
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD-LRISLLVGGDSMESQFEE 139
+L+ L P V+AL+L PTR+LA+Q + ++L RY + + + GG +E Q
Sbjct: 62 LLEMLEPDRP--AVQALVLCPTRELAIQVSEELRKLARYMGGVSVLPVYGGQPIERQVAV 119
Query: 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSEN 199
L + ++IATPGRL+ HLS + L V V DEAD + MGFAE + KI +L E
Sbjct: 120 LRKGVHVVIATPGRLLDHLSR-RTVDLSQVRVTVLDEADEMLDMGFAEDIAKIFTRLPEK 178
Query: 200 RQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI 259
RQ +LFSAT+ + A+ L+DP +VR+ P ++ +F +R+ EK +L +
Sbjct: 179 RQNVLFSATMSREILALAQKFLKDPRMVRVVHGQLAVPVIEQRYFEVRESEK-VEVLSRL 237
Query: 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319
++ + D L+F +TK V+ + + G +GDMDQ R+ +SRFR+R T
Sbjct: 238 LDYYNPDL-ALVFCNTKRRVDEVASQLQARGYLAESLHGDMDQKERERVMSRFRSRSTDI 296
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLL 379
L+ TDVAARGID+ + V N+D P P+ ++HR+GR RAG++G AF+FV+ ++M L
Sbjct: 297 LVATDVAARGIDVEEIGIVFNFDVPQDPEYYIHRIGRTGRAGKSGKAFTFVSGKEMWKLR 356
Query: 380 DLHLF 384
D+ +
Sbjct: 357 DIQKY 361
>gi|401885525|gb|EJT49639.1| ATP-dependent RNA helicase [Trichosporon asahii var. asahii CBS
2479]
gi|406694842|gb|EKC98161.1| ATP-dependent RNA helicase [Trichosporon asahii var. asahii CBS
8904]
Length = 804
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 141/361 (39%), Positives = 215/361 (59%), Gaps = 10/361 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F S+NLS + RA+ G+ PTPIQ + +PL L G D++ A TGSGKTAAF++P+L+R
Sbjct: 210 FASMNLSRPLLRALSSLGFNAPTPIQSRAVPLALLGRDILGSAVTGSGKTAAFMIPILER 269
Query: 85 LNQHVPQG----GVRALILSPTRDLALQTLKFTKELGRY--TDLRISLLVGGDSMESQFE 138
L Q+ +G R L+L PTR+LA+Q + K L D+R +LLVGG S+ +Q
Sbjct: 270 L-QYRDRGKGGAACRVLVLCPTRELAVQCEQVGKALAERGGLDVRFALLVGGLSLNAQAH 328
Query: 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198
L PDI+IATPGRL+ HL+ +L +++ +V DEAD + GF ++L +I+ Q
Sbjct: 329 ALRTLPDILIATPGRLIDHLTNTPSFTLGALDILVIDEADRMLEAGFTDELEEIVRQCPR 388
Query: 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE-KHAALLY 257
RQT+LFSAT+ ++ E K L P V +D + + L F +R EE + ALL
Sbjct: 389 GRQTMLFSATMTDSVDELVKLSLDRPVRVFVDKERNTAAGLTQEFVRVRSEETRSPALLT 448
Query: 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKT 317
+ + + ++ +IF +K + V+F GL + +G++ Q+ R + ++ F+A +
Sbjct: 449 LCKRTVH--EKAIIFFRSKALAHQMRVVFGLCGLVAAELHGNLTQEQRLVALNDFKAGRV 506
Query: 318 MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAY 377
+L+ TD+A+RG+DI ++ VIN+D P + +VHRVGR ARAGR G + S V D
Sbjct: 507 DYLLATDLASRGLDIKGVETVINYDMPGQLAQYVHRVGRTARAGRKGRSISLVGEPDRKM 566
Query: 378 L 378
L
Sbjct: 567 L 567
>gi|384487072|gb|EIE79252.1| hypothetical protein RO3G_03957 [Rhizopus delemar RA 99-880]
Length = 462
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 146/401 (36%), Positives = 236/401 (58%), Gaps = 17/401 (4%)
Query: 17 KKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAA 76
+KK++ F L +S + A ++ +K PT IQ++++P + G D++ +A+TGSGKTAA
Sbjct: 17 QKKAEDLKFSDLGVSKELCEACEKMNFKHPTEIQKESIPWAIEGRDIIGLAQTGSGKTAA 76
Query: 77 FLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQ 136
F +P++QRL Q+ PQ A +L+PTR+LA Q + + LG +R +++VGG M +Q
Sbjct: 77 FAIPIIQRLWQN-PQAFF-ACVLAPTRELAYQIAETFESLGSVIGVRCAVIVGGMDMMTQ 134
Query: 137 FEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL 196
LA+ P II+ TPGRL HL + +LK ++Y+V DEAD L + F ++ +IL +
Sbjct: 135 SIALAKRPHIIVCTPGRLQDHLENTKGFNLKHLKYLVMDEADRLLDLDFGPKIDQILKVI 194
Query: 197 SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKL----AFFTLRQEEKH 252
R T LFSAT+ + +A+ +A L P V+++V TK S L FF L+ K
Sbjct: 195 PRERNTFLFSATMTTKVAKLQRASLHKP--VKVEVATKYSTVKTLLQYYLFFPLKH--KD 250
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
++Y++ E + T+IF T + + ++ R G +G + Q R +++F
Sbjct: 251 CYMVYLLNE--LAGNSTIIFTRTCSDTQKIAIMLRNLGFGAIPLHGQLPQAKRLGALNKF 308
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
+A L+ TDVA+RG+DIPL+D VIN+D P K ++HRVGR ARAGR+G + +FVT
Sbjct: 309 KAGARNILVATDVASRGLDIPLVDVVINYDVPQSSKDYIHRVGRTARAGRSGKSVTFVTQ 368
Query: 373 EDMAYLLDLHLFLSKPIRAAPSE-EEVLLDMDGVMSKIDQA 412
D+ + + L + + A P E +EV++ + ++D+A
Sbjct: 369 YDVELIQRIEKDLERKLDAFPVEKDEVMM----LQERVDEA 405
>gi|323485816|ref|ZP_08091151.1| ATP-dependent RNA helicase RhlE [Clostridium symbiosum WAL-14163]
gi|323400804|gb|EGA93167.1| ATP-dependent RNA helicase RhlE [Clostridium symbiosum WAL-14163]
Length = 458
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 143/370 (38%), Positives = 215/370 (58%), Gaps = 9/370 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L LSP + +A++ KGY P+PIQ K +P +L+G DV+ A+TG+GKTAAF +P++Q
Sbjct: 15 FKDLQLSPLLLKALEEKGYVSPSPIQEKAIPHVLAGRDVLGCAQTGTGKTAAFALPIIQN 74
Query: 85 L----NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
L + + +R+LIL+PTR LALQ + KE G T +R +++ GG S Q EEL
Sbjct: 75 LMKPSEKKYSKRVIRSLILTPTRKLALQIAENFKEYGSRTSVRCAVIFGGVSANPQIEEL 134
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
+ DI++ATPGRL + L + L VE V DEAD + MGF + KI+ L +
Sbjct: 135 RRGIDILVATPGRL-NDLVGQGFVDLAYVEIFVLDEADRMLDMGFIHDVKKIISLLPVRK 193
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSAT+P+ + L +P V + + + + + + +E K + L+Y++
Sbjct: 194 QTLLFSATMPAEIQALTDKLLHNPARVEVTPVSSTVDIIDASLYYVDKENKRSLLVYLLN 253
Query: 261 -EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319
E I+S TL+F TKH + + + + + +GD Q AR+ +S F++ +
Sbjct: 254 HEDITS---TLVFTRTKHGADRVAKFLVKNRISAAAIHGDKSQGARQTALSHFKSGEIQV 310
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLL 379
L+ TD+AARGIDI L VIN+D P P+ ++HR+GR RAG G A SF E+ AY+
Sbjct: 311 LVATDIAARGIDIEELSCVINFDLPNIPETYIHRIGRTGRAGLDGRAISFSDIEEKAYVK 370
Query: 380 DLHLFLSKPI 389
D+ K I
Sbjct: 371 DIEKLTGKAI 380
>gi|221633115|ref|YP_002522340.1| cold-shock dead-box protein a [Thermomicrobium roseum DSM 5159]
gi|221156880|gb|ACM06007.1| cold-shock dead-box protein a [Thermomicrobium roseum DSM 5159]
Length = 534
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 138/348 (39%), Positives = 198/348 (56%), Gaps = 7/348 (2%)
Query: 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQ 83
GF +L LSP + A++ G++ P P+Q + +P++LSG D + A TG+GKTAAF +P+LQ
Sbjct: 13 GFAALGLSPALLAALRDVGFEQPMPVQTEAIPVLLSGRDAIVQAHTGTGKTAAFALPILQ 72
Query: 84 RLNQHVPQG-GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
L VP G G +AL+L+PTR+LA+Q + LGRY D R+ L GG +E Q L
Sbjct: 73 GL---VPYGHGPQALVLTPTRELAIQVAEAIHRLGRYLDARVLALYGGQPIERQLRALRH 129
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
D+I+ TPGR+M HL E + L V V+ DEAD + MGF E + IL + RQT
Sbjct: 130 PVDVIVGTPGRIMDHLRR-ETLRLDQVRVVILDEADEMLDMGFIEDVEWILEHVPRERQT 188
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
LFSAT+P + + + LR P + + + P + + + K AL ++
Sbjct: 189 ALFSATIPPRIRQLTQRYLRAPVTIAIHPERVTVPSIAQTVYEVAAHAKLEALSRIL--D 246
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
+ +IFV TK + L + G +GD+ Q R + RFRA + LI
Sbjct: 247 YEAPTSAIIFVRTKSGADELAHKLQSLGYAAEAIHGDLSQAMRDRAMQRFRAGQVDLLIA 306
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFV 370
TDVAARG+DIP + +VIN+D P P+ +VHR+GR RAG TGTA + +
Sbjct: 307 TDVAARGLDIPAVSHVINFDIPSDPESYVHRIGRTGRAGATGTAITLI 354
>gi|392537500|ref|ZP_10284637.1| ATP-dependent RNA helicase [Pseudoalteromonas marina mano4]
Length = 433
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 140/388 (36%), Positives = 219/388 (56%), Gaps = 11/388 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+S + +P + RA+ Y TPIQR +P + G DV+A A+TG+GKTAAF +P++Q+
Sbjct: 3 FKSFSFAPEIIRALDELNYHTLTPIQRAAIPAVRKGKDVLASAQTGTGKTAAFALPVIQK 62
Query: 85 LNQH--VPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
L + AL+L+PTR+LA Q KE ++T L++ L GG + Q L
Sbjct: 63 LIESDLSTTNAPTALVLAPTRELAEQIANNCKEYAKHTSLKVVSLFGGVNTAGQENALKA 122
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
DI++ATPGRL+ H+ + ++SL +V+++V DEAD + MGF + ++ +++RQ
Sbjct: 123 GVDIVVATPGRLLDHI-RLGNLSLANVKHLVLDEADRMLDMGFITDMQTVIKSCADDRQI 181
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
LLFSAT P+A+ +FA L+ P +VR+D + ++ + + + K L +I +
Sbjct: 182 LLFSATFPAAIKQFASKVLKQPEIVRVDQTNSTASTVQHVVYPVEERRKQELLSELIGK- 240
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
+ QQ L+FV+ K + L +G+ +VC+GD Q R+ + F+ K L+
Sbjct: 241 -KNWQQVLVFVNMKDTADELVKELNLDGIPATVCHGDKSQGNRRRALREFKEGKVRVLVA 299
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
T+VAARGIDI L VIN D P + +VHR+GR RAG G A SFV+ E+ L ++
Sbjct: 300 TEVAARGIDIDGLPRVINIDLPWLAEDYVHRIGRTGRAGNQGQAISFVSREEENTLFEIE 359
Query: 383 LFLSKPIRAA------PSEEEVLLDMDG 404
+ + I+ S EVL+D G
Sbjct: 360 ALIGQKIKRVYLEGYEVSNREVLIDKIG 387
>gi|392545351|ref|ZP_10292488.1| ATP-dependent RNA helicase [Pseudoalteromonas rubra ATCC 29570]
Length = 432
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 138/366 (37%), Positives = 215/366 (58%), Gaps = 3/366 (0%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+S + + +A+ + TPIQ+ +P++ G DV+A A+TG+GKTAAF +P++ R
Sbjct: 3 FKSFSFPDALLQALDELNFHTLTPIQQAAIPVVRRGHDVLATAQTGTGKTAAFALPVIHR 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L + RALIL+PTR+LA Q + +YT L + + GG ++E Q + L+Q
Sbjct: 63 LLEGESLDSARALILAPTRELAEQIANNCQAFCQYTPLTVQAVYGGVNIEGQTQRLSQGV 122
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
DI++ATPGRL+ L + +SL V+Y+V DEAD + MGF + K++ +SE RQ LL
Sbjct: 123 DILVATPGRLL-DLIRLGAVSLAQVKYLVLDEADRMLDMGFVTDMQKVIDMVSEERQLLL 181
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT P+A+ +FAK LR+P LV+ + + ++ + + Q+ K L +I +
Sbjct: 182 FSATFPTAVKQFAKQVLREPKLVQAAKENTTAETVRHVVYPVEQKRKQELLSELIGK--K 239
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
+ Q L+FV+ K + L +G+ +VC+GD Q AR+ + F+ K L+ T+
Sbjct: 240 NWLQVLVFVNMKDDADQLVKELELDGISATVCHGDKSQGARRRALREFKEGKVRVLVATE 299
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
VAARGIDI L VIN+D P + +VHR+GR RAG +G A SFV E+ L+ +
Sbjct: 300 VAARGIDIDGLPRVINFDLPYLAEDYVHRIGRTGRAGNSGQAISFVAREEEQTLIHIETL 359
Query: 385 LSKPIR 390
+ + I+
Sbjct: 360 IGQKIQ 365
>gi|380022105|ref|XP_003694894.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
CshA-like [Apis florea]
Length = 781
Score = 251 bits (640), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 145/379 (38%), Positives = 228/379 (60%), Gaps = 14/379 (3%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L L+ + +AIKR G++ TPIQ +T+PL L+G DV+ A+TG+GKTAAF +P+LQ
Sbjct: 367 FSELGLNDELLKAIKRSGFEEATPIQEQTIPLALAGKDVIGQAQTGTGKTAAFALPILQN 426
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN- 143
L++H ++ALI+ PTR+LA+QT + LGR R+ ++ GG + Q L +
Sbjct: 427 LDKH--NKVIQALIIEPTRELAIQTQEELFRLGRDEKARVQVVYGGADIGRQIRSLKNHV 484
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
P I++ TPGRL+ HL + ++LK+V +V DEAD + MGF + + ILG + +QTL
Sbjct: 485 PAILVGTPGRLLDHLKR-KTINLKNVNTIVLDEADEMLDMGFIQDIESILGYVKNRKQTL 543
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQE-EKHAALLYMIREH 262
LFSAT+P + ++ + DP +VR+ +++ DL +F ++ EK + +I
Sbjct: 544 LFSATMPKPILNISEKFMHDPEIVRIKT-KELTADLIDQYFVRSKDSEKFDIMCRLI--D 600
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHV-SRFRARKTMFLI 321
+ S +IFV TK V+ + + G + +GD+ Q AR+I V RFR+ K L+
Sbjct: 601 VESPDLAVIFVRTKRRVDEVTRGLQARGYNAAGIHGDLSQ-ARRISVLKRFRSGKLDILV 659
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TDVAARG+DI + +V N+D P P VHR+GR RAG+ G++ +FVT ++ Y+ +
Sbjct: 660 ATDVAARGLDISGVTHVYNYDIPQDPDSHVHRIGRTGRAGQNGSSITFVTPNEIGYMRTI 719
Query: 382 HLFLSK---PIRAAPSEEE 397
+K P+R PS+++
Sbjct: 720 EQLTNKKMTPLR-PPSDDQ 737
>gi|119186961|ref|XP_001244087.1| hypothetical protein CIMG_03528 [Coccidioides immitis RS]
gi|118595828|sp|Q1E1N5.1|RRP3_COCIM RecName: Full=ATP-dependent rRNA helicase RRP3
gi|392870806|gb|EAS32639.2| ATP-dependent rRNA helicase RRP3 [Coccidioides immitis RS]
Length = 474
Score = 251 bits (640), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 150/385 (38%), Positives = 219/385 (56%), Gaps = 10/385 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L + ++ A GYK PT IQ +++PL L G D++ +A TGSGKTAAF +P+LQ
Sbjct: 50 FKDLGIIDSLCEACDSLGYKAPTQIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQA 109
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L PQ + L+L+PTR+LA Q + + LG +R +++VGG M SQ L + P
Sbjct: 110 LMDK-PQS-MFGLVLAPTRELAYQISQQFEALGSLISVRCAVIVGGMDMVSQAIALGKKP 167
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
II+ATPGRL+ HL + SL+S++Y+V DEAD L + F L KIL L + R+T L
Sbjct: 168 HIIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKVLPKERRTYL 227
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDT---KISPDLKLAFFTLRQEEKHAALLYMIRE 261
FSAT+ S + +A L +P +R+ V + + L + + K L+Y++ E
Sbjct: 228 FSATMSSKVESLQRASLSNP--LRVSVSSNKYQTVSTLLQNCLIIPHKHKDIYLIYLLNE 285
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
Q +IF T + + L +L R G +G + Q AR + +FR+R L+
Sbjct: 286 F--PGQSVIIFTRTVNETQRLAILLRALGFGAIPLHGQLSQSARLGALGKFRSRSRNILV 343
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TDVAARG+DIP +D V+N+D P K ++HRVGR ARAG++G AFS VT D+ +
Sbjct: 344 ATDVAARGLDIPSVDLVLNYDLPSDSKTYIHRVGRTARAGKSGRAFSLVTQYDVEIWQRI 403
Query: 382 HLFLSKPIRAAPSE-EEVLLDMDGV 405
L K + E EEV++ D V
Sbjct: 404 EAALGKELDEYKVEKEEVMVLSDRV 428
>gi|375308018|ref|ZP_09773305.1| dead/deah box helicase domain-containing protein [Paenibacillus sp.
Aloe-11]
gi|375080349|gb|EHS58570.1| dead/deah box helicase domain-containing protein [Paenibacillus sp.
Aloe-11]
Length = 526
Score = 251 bits (640), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 131/354 (37%), Positives = 213/354 (60%), Gaps = 5/354 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F +L P V +AI G++ TPIQ K++P+ L G D++ A+TG+GKTAAF +P++ +
Sbjct: 4 FAEFDLEPKVIQAITELGFEEATPIQAKSIPIALQGKDMIGQAQTGTGKTAAFGIPLISK 63
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
+ ++ + +RALI++PTR+LA+Q + ++L R+ LR + GG + Q L + P
Sbjct: 64 IARNDEK--IRALIMAPTRELAIQVAEEIEKLSRFKGLRTLPIYGGQDIVRQIRALKKKP 121
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
III TPGRL+ H++ + + L+ V VV DEAD + MGF E + IL Q+ + RQT+L
Sbjct: 122 QIIIGTPGRLLDHINR-KTIKLEDVNTVVLDEADEMLDMGFMEDIQSILKQVPDERQTML 180
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P + A+ L+DP V + +P ++ A+ + + +K AL +I +
Sbjct: 181 FSATMPPNIKRLAEQFLKDPEHVSVIPKQVSAPLIEQAYIEVPERQKFEALSRLI--DME 238
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
S + ++F TK V+ L ++ G +GD+ Q+ R + +FR L+ TD
Sbjct: 239 SPELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLVATD 298
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
VAARG+D+ + +V+N+D P P+ +VHR+GR RAG+ G A+SFVT ++ +L
Sbjct: 299 VAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGEAWSFVTPREIDHL 352
>gi|168180793|ref|ZP_02615457.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum NCTC 2916]
gi|226950212|ref|YP_002805303.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium
botulinum A2 str. Kyoto]
gi|182668220|gb|EDT80199.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum NCTC 2916]
gi|226841562|gb|ACO84228.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A2 str. Kyoto]
Length = 524
Score = 251 bits (640), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 136/384 (35%), Positives = 227/384 (59%), Gaps = 16/384 (4%)
Query: 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQ 83
FE+LNL+ +V +AI+ G++ P+ IQ K++P++L GADV+A A+TG+GKT AF P++
Sbjct: 5 NFENLNLNEDVLKAIQHMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVIS 64
Query: 84 RLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L + GV+AL+L+PTR+LALQ K L +Y+ ++ + GG+S+E Q +++
Sbjct: 65 ALCDKEKKKGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIERQIKDIKSG 124
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
DI++ TPGR++ H++ + L ++++V DEAD + MGF E + I+ SE +QT+
Sbjct: 125 VDIVVGTPGRVLDHINR-RTLKLGGIDFLVLDEADEMLNMGFIEDIETIMESTSEEKQTM 183
Query: 204 LFSATLPSALAEFAKAGLRD--PHLV----RLDVDTKISPDLKLAFFTLRQEEKHAALLY 257
LFSAT+P + + A ++ H+ L VD KI+ + +F ++ ++K AL
Sbjct: 184 LFSATMPEPIKKLALNYMKKDVEHIAILKKSLTVD-KIAQN----YFAVKNKDKLEALCR 238
Query: 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKT 317
+I + +IF TK V+ L + +G +GDM Q+ R + +F+
Sbjct: 239 IIDSE--EPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATL 296
Query: 318 MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAY 377
FL+ TDVAARGID+ + +VIN+D P + +VHR+GR RA + GTA+S VT +++
Sbjct: 297 NFLVATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSS 356
Query: 378 LLDLHLFLSKPI--RAAPSEEEVL 399
+ + I + P+ E++L
Sbjct: 357 IRQIERITKSKIKKKELPTLEDIL 380
>gi|327295054|ref|XP_003232222.1| ATP-dependent RNA helicase DRS1 [Trichophyton rubrum CBS 118892]
gi|326465394|gb|EGD90847.1| ATP-dependent RNA helicase DRS1 [Trichophyton rubrum CBS 118892]
Length = 813
Score = 251 bits (640), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 142/357 (39%), Positives = 214/357 (59%), Gaps = 12/357 (3%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F++L+LS + R + G+ PTPIQRKT+P+ L G DVV A TGSGKT AF+VP+L+R
Sbjct: 298 FQNLSLSRPILRGLASVGFSTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIVPILER 357
Query: 85 L---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L + VP R IL PTR+LA+Q +L +TD+ LVGG S+ Q L
Sbjct: 358 LLYRPRKVPTS--RVAILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENILK 415
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ PD+IIATPGR + H+ ++ ++E +V DEAD + GFAE+L++IL + ++RQ
Sbjct: 416 KRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFAEELNEILTTIPKSRQ 475
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTK--ISPDLKLAFFTLR--QEEKHAALLY 257
T+LFSAT+ S++ + + GL P VRL VD+K L F LR +E+K L
Sbjct: 476 TMLFSATMTSSVDKLIRLGLNKP--VRLMVDSKKQTVGTLVQEFVRLRPGREDKRLGYLM 533
Query: 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKT 317
+ + + ++ + ++F K + ++F GL+ + +G M Q+ R V FR K
Sbjct: 534 FLCKTVYTN-RVIVFFRQKKEAHRVRIIFGLMGLKAAELHGSMSQEQRIKSVEDFRDAKV 592
Query: 318 MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
+L+ TD+A+RG+DI ++ VIN++ P +I++HRVGR ARAGR+G A + D
Sbjct: 593 SYLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPD 649
>gi|417838712|ref|ZP_12484950.1| cold-shock DEAD-box protein A [Lactobacillus johnsonii pf01]
gi|338762255|gb|EGP13524.1| cold-shock DEAD-box protein A [Lactobacillus johnsonii pf01]
Length = 484
Score = 251 bits (640), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 152/450 (33%), Positives = 237/450 (52%), Gaps = 18/450 (4%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F +NL P + +AIKR G++ TPIQ KT+PL+L DV+ A+TG+GKTAAF +P+LQ
Sbjct: 3 FSEMNLKPEILKAIKRSGFEEATPIQEKTIPLVLEEKDVIGQAQTGTGKTAAFGLPILQN 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L++ ++A+I+ PTR+LA+QT + LGR R+ ++ GG + Q L Q P
Sbjct: 63 LDKQ--HDSIQAIIIEPTRELAIQTQEELFRLGRDERARVQVVYGGADIRRQIRALKQTP 120
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
I++ TPGRL+ HL + + V+ +V DEAD + MGF + + IL S QTLL
Sbjct: 121 AILVGTPGRLLDHLKR-GTIDISKVKTIVLDEADEMLDMGFIQDIESILKYASSKHQTLL 179
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P + + + DP +V++ + + F ++ EK L +I +
Sbjct: 180 FSATMPKPILRIGEKFMNDPEIVKIKGKELTANLIDQYFVRAKENEKFDILCRLI--DVQ 237
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
+ +IF TK V+ L + G + +GD+ Q R + RFR K L+ TD
Sbjct: 238 NPDLAVIFGRTKRRVDELTRGLQARGYNAAGIHGDLSQAKRMSVLKRFRKGKLDILVATD 297
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
VAARG+DI + +V N+D P P +VHR+GR RAG+ G + +FVT ++ Y+ +
Sbjct: 298 VAARGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGQNGMSVTFVTPNEIGYMRTIEQL 357
Query: 385 LSK---PIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVS--DRVREII 439
K P++ EE + K+ + + + + Y ++D S D V ++
Sbjct: 358 THKKMMPLKPPTDEEAFKGQLSAANKKVAELLDSDLSKYTEEASQLLDDYSAIDLVAALL 417
Query: 440 -DSSADLNSLQRTCTNAFRLYSKTKPLPSK 468
D S D +S++ T KPLP K
Sbjct: 418 KDLSKDADSVKVKIT-------PEKPLPFK 440
>gi|194467658|ref|ZP_03073645.1| DEAD/DEAH box helicase domain protein [Lactobacillus reuteri
100-23]
gi|194454694|gb|EDX43591.1| DEAD/DEAH box helicase domain protein [Lactobacillus reuteri
100-23]
Length = 497
Score = 251 bits (640), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 139/398 (34%), Positives = 226/398 (56%), Gaps = 10/398 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L LS ++ +AIKR GY+ TPIQ +T+P++L G DV+ A+TG+GKTAAF +P+++
Sbjct: 3 FSELGLSDSLLKAIKRSGYEEATPIQEQTIPMVLEGKDVIGQAQTGTGKTAAFGLPIIEN 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
++ P ++A+I+SPTR+LA+QT + LG+ +R+ ++ GG + Q + L Q+P
Sbjct: 63 VDTENPN--IQAIIISPTRELAIQTQEELYRLGKDKHVRVQVVYGGADIRRQIKSLKQHP 120
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
I++ TPGRL H++ + L ++ +V DEAD + MGF E + I+ + ++RQTLL
Sbjct: 121 QILVGTPGRLRDHINR-HTVKLDHIKTLVLDEADEMLNMGFLEDIESIIKETPDDRQTLL 179
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFT-LRQEEKHAALLYMIREHI 263
FSAT+P + + DP VR+ +++ DL ++ R EK + +I +
Sbjct: 180 FSATMPPEIKRIGVQFMSDPETVRIKA-KELTTDLVDQYYVRARDYEKFDIMTRLI--DV 236
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
T++F TK V+ L+ G + +GD+ QD R + +F+ + L+ T
Sbjct: 237 QDPDLTIVFGRTKRRVDELSKGLIARGYNAAGIHGDLTQDKRSKIMWKFKNNELDILVAT 296
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHL 383
DVAARG+DI + +V N+D P P +VHR+GR RAG G + +FVT +M YL ++
Sbjct: 297 DVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMDYLHEIEK 356
Query: 384 FLSK---PIRAAPSEEEVLLDMDGVMSKIDQAIANGET 418
P++ +EE + + ID+ IA T
Sbjct: 357 LTRVRMLPLKPPTAEEAFKGQVASAFNDIDELIAQDST 394
>gi|357152627|ref|XP_003576182.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 28-like isoform 1
[Brachypodium distachyon]
Length = 780
Score = 251 bits (640), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 144/403 (35%), Positives = 229/403 (56%), Gaps = 14/403 (3%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K+ F LN+S + RA + GY+ PTPIQ +PL L+G D+ A TGSGKTAAF +P
Sbjct: 173 KANSFLELNISRPLLRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLP 232
Query: 81 MLQRL---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF 137
+L+RL + VP +R LIL+PTR+LA Q ++L ++TD+R L+VGG + Q
Sbjct: 233 VLERLLFRPKRVP--AIRVLILTPTRELAAQVHSMIEKLAQFTDIRCCLIVGGLPTKVQE 290
Query: 138 EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS 197
L NPDI++ATPGR++ HL + L+ + ++ DEAD L +GF+ ++++++
Sbjct: 291 VALRSNPDIVVATPGRIIDHLRNSLSVGLEDLAILILDEADRLLELGFSVEINELIRMCP 350
Query: 198 ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTL-----RQEEKH 252
+ RQT+LFSAT+ + E K L P VRL+ D + L + R+ +
Sbjct: 351 KRRQTMLFSATMTEEIDELVKLSLNKP--VRLEADPSLKRPATLTEEVVRIRRSREANQE 408
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
A LL + + ++ +IF TKH L ++F G++ + +G++ Q R + F
Sbjct: 409 AVLLALCLKTFK--ERVIIFSGTKHSAHRLKIMFGLSGMKAAELHGNLTQAQRLEALELF 466
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
+ ++ LI TD+AARGIDI + VIN+ P K ++HRVGR ARAGR G A +FVT
Sbjct: 467 KKQEVDILIATDIAARGIDIVGVRTVINFACPRDVKTYLHRVGRTARAGREGYAVTFVTD 526
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIAN 415
+D + L + +++ E+ + D ++ +++ I+N
Sbjct: 527 DDRSLLKAIAKKAGSQLKSRIVAEKPVADCAKLIDQLENQISN 569
>gi|255941704|ref|XP_002561621.1| Pc16g13220 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211586244|emb|CAP93992.1| Pc16g13220 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 815
Score = 251 bits (640), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 141/358 (39%), Positives = 216/358 (60%), Gaps = 14/358 (3%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ NLS + R + G+ PTPIQRK +P+ L G D+V A TGSGKTAAF+VP+L+R
Sbjct: 306 FQEFNLSRPILRGLAAVGFTDPTPIQRKAIPVALLGKDIVGSAVTGSGKTAAFIVPILER 365
Query: 85 L---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L + VP R +IL PTR+LA+Q + +L +TD+ LVGG S+ Q L
Sbjct: 366 LLFRPRKVPTS--RVVILMPTRELAVQCYNVSVKLATFTDVTFCQLVGGFSLREQENVLK 423
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ PD+IIATPGR + H+ ++ ++E +V DEAD + GFA++L++IL + ++RQ
Sbjct: 424 KRPDVIIATPGRFIDHMRNSPSFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQ 483
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLA--FFTL---RQEEKHAALL 256
T+LFSAT+ ++ + + G+ P VRL VD+K + L F L R++++ LL
Sbjct: 484 TMLFSATMTDSIDKLIRVGMNRP--VRLMVDSKKNTVSTLVQEFVRLRPGREDKRLGYLL 541
Query: 257 YMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK 316
++ +E S ++ +IF K + ++F GL+ + +G + Q+ R V FR K
Sbjct: 542 HLCKEIYS--KRVIIFFRQKKEAHRVRIIFSLLGLKAAELHGSLSQEQRIKSVENFRDGK 599
Query: 317 TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
FL+ TDVA+RG+DI ++ VIN++ P +I++HRVGR ARAGR+G A + D
Sbjct: 600 VAFLLATDVASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPD 657
>gi|209447030|ref|NP_001129273.1| probable ATP-dependent RNA helicase DDX27 [Rattus norvegicus]
gi|169642292|gb|AAI60885.1| Ddx27 protein [Rattus norvegicus]
Length = 761
Score = 251 bits (640), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 152/433 (35%), Positives = 241/433 (55%), Gaps = 16/433 (3%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
KS F+ +NLS + +AI G+K PTPIQ+ +P+ L G D+ A A TG+GKTAAF +P
Sbjct: 182 KSLTFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALP 241
Query: 81 MLQRLNQHVPQGGV-RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139
+L+RL Q V R L+L PTR+L +Q TK+L ++ + L VGG ++SQ
Sbjct: 242 VLERLIYKPRQAAVTRVLVLVPTRELGIQVHSVTKQLAQFCSITTCLAVGGLDVKSQEAA 301
Query: 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSEN 199
L PDI+IATPGRL+ HL L S+E ++ DEAD + F EQ+ +I+ S +
Sbjct: 302 LRAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHH 361
Query: 200 RQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR--QEEKHAALLY 257
RQT+LFSAT+ + + A L++P + ++ +T ++P L+ F +R +E A++
Sbjct: 362 RQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVA 421
Query: 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKT 317
+ +D ++F TK +++L GL+ +G++ Q R + RF+ +
Sbjct: 422 ALLMRTFTD-HVMLFTQTKKQAHRMHILLGLLGLQVGELHGNLSQTQRLEALRRFKDEQI 480
Query: 318 MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAY 377
L+ TDVAARG+DI + VIN+ P K +VHRVGR ARAGR G + S V E+
Sbjct: 481 DILVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVSLVGEEERKM 540
Query: 378 LLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVRE 437
L ++ P++A ++V+L + K+++ +Y V+ L ++ RE
Sbjct: 541 LKEIVKAAKAPVKARILPQDVILKFRDKIEKMEK------DVYA-----VLQLEAEE-RE 588
Query: 438 IIDSSADLNSLQR 450
+ S A +++ QR
Sbjct: 589 VQQSEAQIDTAQR 601
>gi|357152629|ref|XP_003576183.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 28-like isoform 2
[Brachypodium distachyon]
Length = 770
Score = 251 bits (640), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 144/403 (35%), Positives = 229/403 (56%), Gaps = 14/403 (3%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
K+ F LN+S + RA + GY+ PTPIQ +PL L+G D+ A TGSGKTAAF +P
Sbjct: 163 KANSFLELNISRPLLRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLP 222
Query: 81 MLQRL---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF 137
+L+RL + VP +R LIL+PTR+LA Q ++L ++TD+R L+VGG + Q
Sbjct: 223 VLERLLFRPKRVP--AIRVLILTPTRELAAQVHSMIEKLAQFTDIRCCLIVGGLPTKVQE 280
Query: 138 EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS 197
L NPDI++ATPGR++ HL + L+ + ++ DEAD L +GF+ ++++++
Sbjct: 281 VALRSNPDIVVATPGRIIDHLRNSLSVGLEDLAILILDEADRLLELGFSVEINELIRMCP 340
Query: 198 ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTL-----RQEEKH 252
+ RQT+LFSAT+ + E K L P VRL+ D + L + R+ +
Sbjct: 341 KRRQTMLFSATMTEEIDELVKLSLNKP--VRLEADPSLKRPATLTEEVVRIRRSREANQE 398
Query: 253 AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF 312
A LL + + ++ +IF TKH L ++F G++ + +G++ Q R + F
Sbjct: 399 AVLLALCLKTFK--ERVIIFSGTKHSAHRLKIMFGLSGMKAAELHGNLTQAQRLEALELF 456
Query: 313 RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372
+ ++ LI TD+AARGIDI + VIN+ P K ++HRVGR ARAGR G A +FVT
Sbjct: 457 KKQEVDILIATDIAARGIDIVGVRTVINFACPRDVKTYLHRVGRTARAGREGYAVTFVTD 516
Query: 373 EDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIAN 415
+D + L + +++ E+ + D ++ +++ I+N
Sbjct: 517 DDRSLLKAIAKKAGSQLKSRIVAEKPVADCAKLIDQLENQISN 559
>gi|315043240|ref|XP_003170996.1| ATP-dependent RNA helicase drs1 [Arthroderma gypseum CBS 118893]
gi|311344785|gb|EFR03988.1| ATP-dependent RNA helicase drs1 [Arthroderma gypseum CBS 118893]
Length = 814
Score = 251 bits (640), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 144/366 (39%), Positives = 218/366 (59%), Gaps = 15/366 (4%)
Query: 19 KSKSGG---FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTA 75
KS SG F++L+LS + R + G+ PTPIQ+KT+P+ L G DVV A TGSGKT
Sbjct: 292 KSASGAPASFQNLSLSRPILRGLASVGFSAPTPIQKKTIPVALLGKDVVGGAVTGSGKTG 351
Query: 76 AFLVPMLQRL---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132
AF+VP+L+RL + VP R IL PTR+LA+Q +L +TD+ LVGG S
Sbjct: 352 AFIVPILERLLYRPRKVPTS--RVAILMPTRELAVQCYNVATKLATFTDITFCQLVGGFS 409
Query: 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192
+ Q L + PD+IIATPGR + H+ ++ ++E +V DEAD + GFAE+L++I
Sbjct: 410 LREQENILKKRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFAEELNEI 469
Query: 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTK--ISPDLKLAFFTLR--Q 248
L + ++RQT+LFSAT+ +++ + + GL P VRL VD+K L F LR +
Sbjct: 470 LTTIPKSRQTMLFSATMTNSVDKLIRVGLNKP--VRLMVDSKKQTVGTLVQEFVRLRPGR 527
Query: 249 EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIH 308
E+K L + + + ++ + ++F K + ++F GL+ + +G M Q+ R
Sbjct: 528 EDKRLGYLMFLCKTVYTN-RVIVFFRQKKEAHRVRIIFGLMGLKAAELHGSMSQEQRIKS 586
Query: 309 VSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFS 368
V FR K +L+ TD+A+RG+DI ++ VIN++ P +I++HRVGR ARAGR+G A +
Sbjct: 587 VEDFRDAKVSYLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACT 646
Query: 369 FVTSED 374
D
Sbjct: 647 IAAEPD 652
>gi|120610479|ref|YP_970157.1| DEAD/DEAH box helicase [Acidovorax citrulli AAC00-1]
gi|120588943|gb|ABM32383.1| DEAD/DEAH box helicase domain protein [Acidovorax citrulli AAC00-1]
Length = 599
Score = 251 bits (640), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 130/368 (35%), Positives = 217/368 (58%), Gaps = 6/368 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ LNL+P + +A+ +GY+ PTPIQ + +P +L+G D++A A+TG+GKTAAF +PML R
Sbjct: 3 FDELNLAPAILKAVHEQGYETPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPMLHR 62
Query: 85 LNQHV---PQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L Q P GG+RAL+L+PTR+LA Q + + ++ D++ +++ GG M Q + +
Sbjct: 63 LTQGGTARPAGGIRALVLTPTRELAAQVEENLRAYAKHLDVKSTVIFGGVGMNPQIDRIK 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ DI++ATPGRL+ L + + L VE +V DEAD + MGF + K+L + ++Q
Sbjct: 123 RGVDILVATPGRLLD-LQQQGFLDLSRVEILVLDEADRMLDMGFIHDVKKVLALVPRDKQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
+LLFSAT + E A L++P +++ + + + +K LL++I++
Sbjct: 182 SLLFSATFSDEIRELAGTLLKNPQSIQVTPRNTTVQRITQVIHPVGRGKKKQVLLHIIQQ 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
H S Q L+F TK + + G+ +G+ Q AR ++ F++ L+
Sbjct: 242 HNWS--QVLVFTRTKFGANNVAEFLTKNGVTAMALHGNKSQSARTQALAGFKSGDIRALV 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TD+AARGIDI L +V+N++ P P+ +VHR+GR RAG +G A S V ++ +++++
Sbjct: 300 ATDIAARGIDIDELPHVVNYEIPNVPEDYVHRIGRTGRAGASGEAVSLVCMDEEGFMMEI 359
Query: 382 HLFLSKPI 389
F + I
Sbjct: 360 ERFTKQEI 367
>gi|148380762|ref|YP_001255303.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A str. ATCC 3502]
gi|153932415|ref|YP_001385046.1| DEAD/DEAH box helicase [Clostridium botulinum A str. ATCC 19397]
gi|153936759|ref|YP_001388516.1| DEAD/DEAH box helicase [Clostridium botulinum A str. Hall]
gi|148290246|emb|CAL84365.1| ATP-dependent RNA helicase (cold-shock dead-box protein)
[Clostridium botulinum A str. ATCC 3502]
gi|152928459|gb|ABS33959.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A str. ATCC 19397]
gi|152932673|gb|ABS38172.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum A str. Hall]
Length = 524
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 132/382 (34%), Positives = 227/382 (59%), Gaps = 12/382 (3%)
Query: 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQ 83
FE+LNL+ +V +AI+ G++ P+ IQ K++P++L GADV+A A+TG+GKT AF P++
Sbjct: 5 NFENLNLNEDVLKAIQYMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVIS 64
Query: 84 RLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L + GV+AL+L+PTR+LALQ K L +Y+ ++ + GG+S+E Q +++
Sbjct: 65 ALCDKEKKKGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIERQIKDIKSG 124
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
DI++ TPGR++ H++ + L +++++ DEAD + MGF E + I+ SE +QT+
Sbjct: 125 VDIVVGTPGRILDHINR-RTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTSEEKQTM 183
Query: 204 LFSATLPSALAEFAKAGLRD--PHLVRLDVDTKISPDLKLA--FFTLRQEEKHAALLYMI 259
LFSAT+P+ + + A ++ H+ L + K+A +F ++ ++K A+ +I
Sbjct: 184 LFSATMPAPIKKLALNYMKKDVEHIAILKKSLTVD---KIAQHYFAVKNKDKLEAICRII 240
Query: 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319
+ +IF TK V+ L + +G +GDM Q+ R + +F+ F
Sbjct: 241 DSE--EPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNF 298
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLL 379
L+ TDVAARGID+ + +VIN+D P + +VHR+GR RA + GTA+S VT +++ +
Sbjct: 299 LVATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIR 358
Query: 380 DLHLFLSKPI--RAAPSEEEVL 399
+ + I + P+ E++L
Sbjct: 359 QIERIIKSKITKKELPTLEDIL 380
>gi|229918086|ref|YP_002886732.1| DEAD/DEAH box helicase [Exiguobacterium sp. AT1b]
gi|229469515|gb|ACQ71287.1| DEAD/DEAH box helicase domain protein [Exiguobacterium sp. AT1b]
Length = 509
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 134/377 (35%), Positives = 218/377 (57%), Gaps = 7/377 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L LS + + + + G++ TPIQ +T+P+ L+G DV+ A+TG+GKTAAF +P ++R
Sbjct: 4 FQDLQLSEALVKGVHKMGFEEATPIQAETIPVALTGVDVLGQAQTGTGKTAAFGIPTIER 63
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
++ Q V+AL+L+PTR+LA+Q + ++G + + GG ++ Q L +NP
Sbjct: 64 IDSKARQ--VQALVLAPTRELAIQVAEELNKIGETKRVYALPVYGGQQIDRQIRGLKKNP 121
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
I++ATPGRLM H+ + + L ++ V+ DEAD + MGF E + IL L E RQTLL
Sbjct: 122 QIVVATPGRLMDHMKR-KTIKLDDIQTVILDEADEMLNMGFVEDIETILAGLPEERQTLL 180
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P + + A+ ++ P ++++ ++ F LR+ +K L +I I
Sbjct: 181 FSATMPPQIKKIAERFMKSPTIIKVKAKEMTVENINQQFLELREGQKFDTLCRLI--DID 238
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
S + ++IF TK V+ + + G +GD+ Q R + RF+ L+ TD
Sbjct: 239 SPELSIIFARTKKRVDEVTEALIKRGYTADGLHGDLTQSKRDQVIRRFKNGTIDILVATD 298
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
VAARG+DI + +V N+D P P+ +VHR+GR RAG+TGTA +F+T + + +
Sbjct: 299 VAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGTALTFITPREFGQVKAIERV 358
Query: 385 LSKPI--RAAPSEEEVL 399
+K + R P+ EVL
Sbjct: 359 TNKKMNRRHVPTIAEVL 375
>gi|428310822|ref|YP_007121799.1| DNA/RNA helicase [Microcoleus sp. PCC 7113]
gi|428252434|gb|AFZ18393.1| DNA/RNA helicase, superfamily II [Microcoleus sp. PCC 7113]
Length = 433
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 137/366 (37%), Positives = 210/366 (57%), Gaps = 6/366 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F +L LS ++ RA+ GY PTPIQ++ +P +L G DV A A+TG+GKTA F +P+LQ
Sbjct: 3 FRNLGLSTDLLRAVADSGYTEPTPIQQQAIPAVLQGKDVFASAQTGTGKTAGFTLPLLQL 62
Query: 85 LNQHVPQG---GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
LN P RALIL+PTR+LA Q K G+Y LR +++ GG +++Q + L
Sbjct: 63 LNTTNPNKVHRTPRALILTPTRELADQVNDSVKTYGKYLSLRSAVVYGGVGIKAQIQTLR 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ DI++ATPGRL+ H+ + + + L VE +V DE D + MGF + KIL L +RQ
Sbjct: 123 RGVDILVATPGRLLDHVGQ-KTVDLSQVEILVLDECDRMLDMGFIRDIRKILAILPSSRQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
TL+FSAT + + A L+ P + + + ++ + ++ K L YMI
Sbjct: 182 TLMFSATFSKPIQQLANTLLKSPTQIEVAPRNTAAQQVEQVVHPVDRDRKRELLSYMIGF 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
H + +Q L+F TKH L ++GL+ + +G+ Q AR + F+ K L+
Sbjct: 242 H--NWKQVLVFTRTKHGANRLAEQLAKDGLKSTAIHGNKSQAARTRALQDFKQGKVRVLV 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TDVA+RG+DI L +V+N++ P P+ +VHR+GR RAG G A S V ++ +L D+
Sbjct: 300 ATDVASRGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAGNEGRAVSLVCGDEYPFLKDI 359
Query: 382 HLFLSK 387
L++
Sbjct: 360 ERLLNQ 365
>gi|392554770|ref|ZP_10301907.1| ATP-dependent RNA helicase [Pseudoalteromonas undina NCIMB 2128]
Length = 433
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 138/388 (35%), Positives = 218/388 (56%), Gaps = 11/388 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+S + +P + +A+ Y TPIQR +P + G DV+A A+TG+GKTAAF +P++Q+
Sbjct: 3 FKSFSFAPELIQALDELNYHTLTPIQRSAIPAVRKGKDVLASAQTGTGKTAAFALPIIQK 62
Query: 85 L--NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
L + AL+L+PTR+LA Q K+ +YT L++ L GG + Q L +
Sbjct: 63 LFESDCSTTNAPSALVLAPTRELAEQIANNFKDFAKYTQLKVVSLFGGVNTAGQEIALKE 122
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
D+++ATPGRL+ H+ + ++SL V+++V DEAD + MGF + ++ ++ RQ
Sbjct: 123 GVDVVVATPGRLLDHI-RLGNLSLAQVKHLVLDEADRMLDMGFINDMQSVIKSCADERQI 181
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
LLFSAT P+A+ +FA L+ P +VR+D + ++ + + + K L +I +
Sbjct: 182 LLFSATFPAAIKQFASKVLKQPEIVRVDQTNSTASTVQHVVYPVEERRKQELLSELIGKK 241
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
+ QQ L+FV+ K + L +G+ +VC+GD Q R+ + F+ K L+
Sbjct: 242 --NWQQVLVFVNMKETADELVTELNLDGIPAAVCHGDKSQGNRRRALREFKEGKVRVLVA 299
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
T+VAARGIDI L VIN D P + +VHR+GR RAG G A SFV+ E+ L ++
Sbjct: 300 TEVAARGIDIDCLPRVINIDLPWLAEDYVHRIGRTGRAGNQGQAISFVSREEENMLFEIE 359
Query: 383 LFLSKPIRAA------PSEEEVLLDMDG 404
+ + I+ S EVL+D G
Sbjct: 360 TLIGQKIKRVYLEGYEVSNREVLIDKIG 387
>gi|265754229|ref|ZP_06089418.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 3_1_33FAA]
gi|423241599|ref|ZP_17222711.1| hypothetical protein HMPREF1065_03334 [Bacteroides dorei
CL03T12C01]
gi|263234938|gb|EEZ20493.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 3_1_33FAA]
gi|392641052|gb|EIY34840.1| hypothetical protein HMPREF1065_03334 [Bacteroides dorei
CL03T12C01]
Length = 434
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 135/359 (37%), Positives = 216/359 (60%), Gaps = 5/359 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L+L + +A+++ GY PTPIQ + +P++L G D++ A+TG+GKTAAF +P++QR
Sbjct: 3 FKELDLIEPILKALQQTGYTTPTPIQEQAIPVLLKGKDLLGCAQTGTGKTAAFAIPLIQR 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L Q + G++ALIL+PTR+LA+Q + + +YT ++ +++ GG ++Q + L +
Sbjct: 63 LYQSDHKKGIKALILTPTRELAIQIGENFDQYAKYTGVKHAVIFGGVPQKAQVDALKRGV 122
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
++IATPGRL+ L +SLK +EY V DEAD + MGF + K+L + RQTL
Sbjct: 123 QVLIATPGRLL-DLQSQGCISLKGLEYFVLDEADRMLDMGFIHDIKKVLKLIPARRQTLF 181
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLD-VDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
FSAT+PS + + A + L +P V + V + + + +F ++E+K L + I
Sbjct: 182 FSATMPSEIEKLADSMLTNPKKVEVTPVSSTVDTIQQSVYFVEKKEKKDLLLHLLKNPEI 241
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
S LIF TKH + L + + + +G+ Q+AR+ ++ F+ T LI T
Sbjct: 242 ES---VLIFTRTKHGADKLAKILNKSEIGAEAIHGNKSQNARQRALTNFKDHTTRVLIAT 298
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
D+AARGID+ L +VIN++ P + +VHR+GR RAG G A SF SE++ YL D+
Sbjct: 299 DIAARGIDVNQLSHVINYELPNISETYVHRIGRTGRAGHDGIAISFCESEELPYLKDIQ 357
>gi|91785132|ref|YP_560338.1| ATP-dependent RNA helicase 1 [Burkholderia xenovorans LB400]
gi|91689086|gb|ABE32286.1| Putative ATP-dependent RNA helicase 1 [Burkholderia xenovorans
LB400]
Length = 543
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 136/371 (36%), Positives = 211/371 (56%), Gaps = 9/371 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+SL LS + RA+ GY PTPIQ + +P +L+G D++A A+TG+GKTA F +P+LQR
Sbjct: 25 FDSLGLSEPLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPILQR 84
Query: 85 LNQH--VPQG----GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138
LN V G VRALIL+PTR+LA Q + + G+Y L+ +++ GG + Q
Sbjct: 85 LNSSPAVANGSGKRAVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIG 144
Query: 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198
L DI++ATPGRL+ H+ + + + L +E +V DEAD + MGF + ++L +L
Sbjct: 145 ALRSGVDIVVATPGRLLDHMQQ-KTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPP 203
Query: 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258
RQ LLFSAT + A L P L+ + + + + +++K L ++
Sbjct: 204 KRQNLLFSATFSDEIKTLADNLLDSPALIEVARRNTTAETVAQKIHPVDRDKKRELLTHL 263
Query: 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
I++H + Q L+F TKH L ++G+ +G+ Q AR ++ F+
Sbjct: 264 IKQH--NWFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKDGTLQ 321
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
L+ TD+AARGIDI L +V+N+D P P+ +VHR+GR RAG TG A S V +++ L
Sbjct: 322 VLVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLL 381
Query: 379 LDLHLFLSKPI 389
D+ + +P+
Sbjct: 382 KDIEKLIKRPV 392
>gi|170094690|ref|XP_001878566.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647020|gb|EDR11265.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 453
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 141/376 (37%), Positives = 226/376 (60%), Gaps = 10/376 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+SL L + A+++ GYK PT IQ +++P L G D++ +A TGSGKTAAF +P+LQ+
Sbjct: 19 FKSLGLIDPLLEALEQVGYKTPTDIQVESLPHALEGRDIIGVASTGSGKTAAFALPILQK 78
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L + P+G + A +L+PTR+LA Q + + LG R +++VGG M +Q LA+ P
Sbjct: 79 LWED-PKG-LFACVLAPTRELAYQISQQFESLGSAMGARCAVIVGGMDMPAQAIALAKRP 136
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
I++ATPGRLM HL E + SL+S++++V DEAD L + F + KIL + + R T L
Sbjct: 137 HIVVATPGRLMQHLEETKGFSLRSIKFLVLDEADRLLDLDFGASIDKILKVIPKERTTYL 196
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTK---ISPDLKLAFFTLRQEEKHAALLYMIRE 261
FSAT+ + +A+ +A L +P VR++V +K +S L+ + + ++K A L+Y+I
Sbjct: 197 FSATMTTKVAKLQRASLSNP--VRIEVSSKYQTVSTLLQY-YLLMPLKDKDAYLIYLINS 253
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ ++F T H + L+++ R G +G + Q R + +F++ L+
Sbjct: 254 L--AQNSIIMFTRTVHDAQRLSIILRTLGFPAVPLHGQLSQSQRLGALGKFKSGGRRVLV 311
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TDVA+RG+DIP +D VIN+D P K ++HRVGR ARAGR G + + VT D+ + +
Sbjct: 312 ATDVASRGLDIPSVDIVINFDIPTHSKDYIHRVGRTARAGRAGKSITLVTQYDVELVQRI 371
Query: 382 HLFLSKPIRAAPSEEE 397
+ K + P++ E
Sbjct: 372 EQVVGKKMELWPTDPE 387
>gi|330826029|ref|YP_004389332.1| DEAD/DEAH box helicase [Alicycliphilus denitrificans K601]
gi|329311401|gb|AEB85816.1| DEAD/DEAH box helicase domain protein [Alicycliphilus denitrificans
K601]
Length = 568
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 134/371 (36%), Positives = 217/371 (58%), Gaps = 9/371 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE L L+P + +A++ +GY+ PTPIQ + +P +L+G D++A A+TG+GKTAAF +PML R
Sbjct: 3 FEELKLAPALLQAVQEQGYQNPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPMLHR 62
Query: 85 LNQ-HVPQG-----GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138
L Q P GVRAL+L+PTR+LA Q + + G++ D++ +++ GG M Q E
Sbjct: 63 LAQGQAPTSRFGGRGVRALVLTPTRELAAQVEESVRAYGKHLDIKSTVIFGGVGMNPQIE 122
Query: 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198
+ + D+++ATPGRL+ L + M L VE +V DEAD + MGF + K+L L +
Sbjct: 123 RIKRGVDVLVATPGRLLD-LQQQGFMDLSQVEILVLDEADRMLDMGFIHDVKKVLALLPK 181
Query: 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258
+Q+LLFSAT + E A L DP +++ + + + +K LL++
Sbjct: 182 AKQSLLFSATFSDEIRELAAGLLNDPQSIQVTPRNTTVQRISQVIHPVGRGKKKQVLLHI 241
Query: 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
I++H S Q L+F TK + + G++ +G+ Q AR + F++ +
Sbjct: 242 IQQHDWS--QVLVFTRTKFGANNVAEYLTKHGVQAMALHGNKSQSARTQALEGFKSGQIR 299
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
L+ TD+AARGIDI L +V+N++ P P+ +VHR+GR RAG+ G A S V ++ ++
Sbjct: 300 ALVATDIAARGIDIDDLPHVVNYEIPNVPEDYVHRIGRTGRAGKEGQAVSLVCMDEEGFM 359
Query: 379 LDLHLFLSKPI 389
+++ F + I
Sbjct: 360 MEIERFTKQEI 370
>gi|29347295|ref|NP_810798.1| ATP-dependent RNA helicase [Bacteroides thetaiotaomicron VPI-5482]
gi|29339194|gb|AAO76992.1| putative ATP-dependent RNA helicase [Bacteroides thetaiotaomicron
VPI-5482]
Length = 374
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 129/371 (34%), Positives = 224/371 (60%), Gaps = 6/371 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ LN++ + +AI+ KGY VPTPIQ K +P+ L+ D++ A+TG+GKTA+F +P++Q
Sbjct: 3 FKELNITEPILKAIEEKGYTVPTPIQEKAIPVALAKKDILGCAQTGTGKTASFAIPIIQH 62
Query: 85 LNQHVPQGG---VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L+ + +G ++ALIL+PTR+LALQ + ++ +YT +R ++ GG + Q + L
Sbjct: 63 LHLNKGEGKRSEIKALILTPTRELALQISECIEDYSKYTRIRHGVIFGGVNQRPQVDMLH 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ DI++ATPGRL+ +++ + L +++Y V DEAD + MGF + +IL +L + +Q
Sbjct: 123 KGIDILVATPGRLLDLMNQ-GHIRLDNIQYFVLDEADRMLDMGFIHDIKRILPKLPKEKQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
TL FSAT+P + + L++P + + + +K + + ++EK L+ ++++
Sbjct: 182 TLFFSATMPDTIIALTNSLLKNPVKIYVTPKSSTVDSIKQLVYFVEKKEKSLLLISILQK 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
S D+ LIF TKH+ + + + + G+ +G+ Q AR+ + F++ KT ++
Sbjct: 242 --SEDRSVLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRVMV 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TD+A+RGIDI L VIN+D P P+ +VHR+GR RAG G A +F + E+ + D+
Sbjct: 300 ATDIASRGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNAGMALTFCSQEERKQINDI 359
Query: 382 HLFLSKPIRAA 392
K + A
Sbjct: 360 QKLTGKKLNRA 370
>gi|259047319|ref|ZP_05737720.1| cold-shock DEAD box protein A [Granulicatella adiacens ATCC 49175]
gi|259036015|gb|EEW37270.1| cold-shock DEAD box protein A [Granulicatella adiacens ATCC 49175]
Length = 520
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 132/360 (36%), Positives = 208/360 (57%), Gaps = 5/360 (1%)
Query: 19 KSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78
K ++ F L L + +I++ G++ TPIQ +T+P L G DV+ A+TG+GKTAAF
Sbjct: 8 KEENMKFNELGLDSALLESIEKMGFEEATPIQAQTIPKALQGLDVIGQAQTGTGKTAAFG 67
Query: 79 VPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138
+PMLQ+++ + GV+ L+++PTR+LA+QT + LGR +R+ + GG + Q
Sbjct: 68 LPMLQKIDPS--KKGVQGLVIAPTRELAIQTQEELFRLGRDKKIRVQAVYGGADINRQIR 125
Query: 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198
+L +NP I++ TPGRL+ H+S + L +VE +V DEAD + MGF E + I+ Q+ E
Sbjct: 126 QLKENPQIVVGTPGRLLDHISR-RTLKLGAVETLVLDEADEMLNMGFLEDIESIIKQVPE 184
Query: 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258
NRQTLLFSAT+P + ++DP VR+ + + + F + EK + +
Sbjct: 185 NRQTLLFSATMPDDIKRIGVQFMKDPEHVRIKSNEMTATLIDQYFVKCKDYEKFDIMTRL 244
Query: 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
+ + + + T++F TK V+ L G +GD+ Q R + F+
Sbjct: 245 L--DVQTPELTIVFGRTKRRVDELARGLEMRGYRAEGIHGDLSQQKRMSVLRDFKNNHLD 302
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
L+ TDVAARG+DI + +V N+D P P+ +VHR+GR RAG+ G + +FVT +M YL
Sbjct: 303 ILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQEGMSVTFVTPNEMDYL 362
>gi|224593278|ref|NP_060365.7| probable ATP-dependent RNA helicase DDX27 [Homo sapiens]
gi|29427946|sp|Q96GQ7.2|DDX27_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX27; AltName:
Full=DEAD box protein 27
gi|116497013|gb|AAI26288.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo sapiens]
gi|119596072|gb|EAW75666.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27, isoform CRA_b [Homo
sapiens]
gi|120660308|gb|AAI30276.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo sapiens]
gi|219519028|gb|AAI44126.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo sapiens]
gi|313883552|gb|ADR83262.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [synthetic construct]
Length = 796
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 139/392 (35%), Positives = 224/392 (57%), Gaps = 4/392 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ +NLS + +AI G+K PTPIQ+ +P+ L G D+ A A TG+GKTAAF +P+L+R
Sbjct: 220 FQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLER 279
Query: 85 LNQHVPQGGV-RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L Q V R L+L PTR+L +Q T++L ++ ++ L VGG ++SQ L
Sbjct: 280 LIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAA 339
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
PDI+IATPGRL+ HL L S+E ++ DEAD + F EQ+ +I+ S +RQT+
Sbjct: 340 PDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTM 399
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR--QEEKHAALLYMIRE 261
LFSAT+ + + A L++P + ++ +T ++P L+ F +R +E A++ +
Sbjct: 400 LFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLT 459
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+D ++F TK +++L GL+ +G++ Q R + RF+ + L+
Sbjct: 460 RTFTD-HVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILV 518
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TDVAARG+DI + VIN+ P K +VHRVGR ARAGR G + S V ++ L ++
Sbjct: 519 ATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEI 578
Query: 382 HLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAI 413
P++A ++V+L + K+++ +
Sbjct: 579 VKAAKAPVKARILPQDVILKFRDKIEKMEKDV 610
>gi|168183134|ref|ZP_02617798.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum Bf]
gi|182673701|gb|EDT85662.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum Bf]
Length = 524
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 135/384 (35%), Positives = 227/384 (59%), Gaps = 16/384 (4%)
Query: 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQ 83
FE+LNL+ +V +AI+ G++ P+ IQ K++P++L GADV+A A+TG+GKT AF P++
Sbjct: 5 NFENLNLNEDVLKAIQHMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVIS 64
Query: 84 RLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L + GV+AL+L+PTR+LALQ K L +Y+ ++ + GG+S+E Q +++
Sbjct: 65 ALCDKEKKKGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIERQIKDIKSG 124
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
DI++ TPGR++ H++ + L +++++ DEAD + MGF E + I+ SE +QT+
Sbjct: 125 VDIVVGTPGRVLDHINR-RTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTSEEKQTM 183
Query: 204 LFSATLPSALAEFAKAGLRD--PHLV----RLDVDTKISPDLKLAFFTLRQEEKHAALLY 257
LFSAT+P + + A ++ H+ L VD KI+ + +F ++ ++K AL
Sbjct: 184 LFSATMPEPIKKLALNYMKKDVEHIAILKKSLTVD-KIAQN----YFAVKNKDKLEALCR 238
Query: 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKT 317
+I + +IF TK V+ L + +G +GDM Q+ R + +F+
Sbjct: 239 IIDSE--EPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATL 296
Query: 318 MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAY 377
FL+ TDVAARGID+ + +VIN+D P + +VHR+GR RA + GTA+S VT +++
Sbjct: 297 NFLVATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSS 356
Query: 378 LLDLHLFLSKPI--RAAPSEEEVL 399
+ + I + P+ E++L
Sbjct: 357 IRQIERITKSKIKKKELPTLEDIL 380
>gi|154253690|ref|YP_001414514.1| DEAD/DEAH box helicase [Parvibaculum lavamentivorans DS-1]
gi|154157640|gb|ABS64857.1| DEAD/DEAH box helicase domain protein [Parvibaculum lavamentivorans
DS-1]
Length = 504
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 138/381 (36%), Positives = 215/381 (56%), Gaps = 11/381 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L L+P V +A+ GY PTPIQ + +P +L+G DV+ +A+TG+GKTA+F +PM+ +
Sbjct: 3 FDELGLAPEVLKAVSETGYTEPTPIQAQAIPHVLAGRDVLGIAQTGTGKTASFTLPMIDK 62
Query: 85 LNQHVPQGGV-RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L++ + + R+LIL PTR+LA Q + + G+Y L ++LL+GG S Q ++L +
Sbjct: 63 LSRGRARARMPRSLILEPTRELAAQVAENFETYGKYNKLSMALLIGGVSFGDQEKKLDRG 122
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
D++IATPGRL+ H + + + L V+ +V DEAD + MGF + +I +L RQTL
Sbjct: 123 VDVLIATPGRLLDHCNRGKVL-LTGVQILVIDEADRMLDMGFIPDIEEICKKLPFTRQTL 181
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
FSAT+P + L +P + + + S ++K ++ K L MI E
Sbjct: 182 FFSATMPPEIQRLTDTFLHNPERIEVARASSTSANIKQVLLKTTRDGKRDVLQRMIEE-- 239
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+ + +IF + K V L + GL +GD+DQ R + FR L+ +
Sbjct: 240 DNVKNAIIFCNRKRDVSVLERALSKSGLSAGAIHGDLDQSTRTRTLDGFRNGTIRLLVAS 299
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHL 383
DVAARG+DIP + +V N+D P + +VHR+GR RAG++GTA + T ED YL +
Sbjct: 300 DVAARGLDIPDVSHVFNYDVPSHAEDYVHRIGRTGRAGKSGTAVTLSTREDGKYLAAIEK 359
Query: 384 FLSKPI-------RAAPSEEE 397
+ PI AAP+E +
Sbjct: 360 LIGNPIPSGDVDVPAAPAEAD 380
>gi|239909011|ref|YP_002955753.1| ATP-dependent RNA helicase [Desulfovibrio magneticus RS-1]
gi|239798878|dbj|BAH77867.1| ATP-dependent RNA helicase [Desulfovibrio magneticus RS-1]
Length = 496
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 138/366 (37%), Positives = 213/366 (58%), Gaps = 5/366 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+S L ++ IKR GY+ PTPIQ + +P ++ G D++ +A+TG+GKTAAFL+P+L R
Sbjct: 3 FDSFCLHDSLIANIKRAGYETPTPIQAEAVPHVMEGHDLMGLAQTGTGKTAAFLLPILHR 62
Query: 85 LNQHVPQG-GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L + + R LIL+PTR+LA Q + T + R T LR +++ GG M Q L Q
Sbjct: 63 LITNPARTRSPRTLILAPTRELAEQIFRSTLDFMRGTRLRATVIYGGVGMFPQVRALRQG 122
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
D+I+A PGRL+ HL++ ++ +E +V DEAD +F MGF + +IL L RQTL
Sbjct: 123 VDVIVACPGRLLDHLNQ-GNVRFDGLETLVLDEADHMFDMGFLPDIKRILAALPAKRQTL 181
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
LFSAT+P A++ A L DP VR+ +S ++ A + + +K LL+++ E
Sbjct: 182 LFSATMPPAISGLAAETLTDPVTVRIGHLAPLS-TVEHAIYPVSHNQKAPLLLHLLGE-- 238
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+ + ++F TKH + L G + + G++ Q R+I + FR L+ T
Sbjct: 239 AGKESVIVFTRTKHRAKNLAQQLCRSGHKATCLQGNLSQRQRQIAMDGFRRGSFQILVAT 298
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHL 383
D+AARGID+ + +V+N+D P + + HR+GR RA R G A +FVT EDM + +
Sbjct: 299 DIAARGIDVSQVAHVVNFDIPDTAEAYTHRIGRTGRAERDGQAHTFVTGEDMGMVRAIES 358
Query: 384 FLSKPI 389
+ KP+
Sbjct: 359 HMKKPL 364
>gi|159901480|ref|YP_001547727.1| DEAD/DEAH box helicase [Herpetosiphon aurantiacus DSM 785]
gi|159894519|gb|ABX07599.1| DEAD/DEAH box helicase domain protein [Herpetosiphon aurantiacus
DSM 785]
Length = 584
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 136/367 (37%), Positives = 210/367 (57%), Gaps = 7/367 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L L RAI GY+ PTPIQ +++ L+LSG D++A A+TG+GKTAAF +P ++R
Sbjct: 4 FTELGLGEATLRAITELGYEEPTPIQAQSIGLMLSGNDIIAQAQTGTGKTAAFSLPTIER 63
Query: 85 LNQHVPQG-GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
++ P+ GV+ALIL+PTR+LA+Q G+Y ++R + GG ++ Q L +
Sbjct: 64 ID---PKAMGVQALILTPTRELAVQVSDAISAYGKYLNIRALPVYGGQPIDRQLRALKRG 120
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
+I+I TPGRLM H+ E + L +V VV DEAD + MGF + + IL + ++RQT
Sbjct: 121 VNIVIGTPGRLMDHM-ERGTLDLSTVRTVVLDEADEMLNMGFVDDIEYILERAPKDRQTA 179
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
L+SAT+P +A A+ LR P +V ++ + P ++ ++ + +K L ++ +
Sbjct: 180 LYSATMPDEIARLARKYLRSPQMVTIEREQLTVPQIRQVYYEIGARDKFEVLTRIL--DL 237
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+IF TK V+ L G + +GD+ Q R + RFR + L+ T
Sbjct: 238 EMPTSAIIFCRTKAMVDELGEKLLARGYGAELLHGDLSQAMRDRVMKRFREEQVEILVAT 297
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHL 383
DVAARG+DI + +VIN+D P P+ +VHR+GR RAGR+G A + VT + L +
Sbjct: 298 DVAARGLDIEHVSHVINYDIPLDPEAYVHRIGRTGRAGRSGVAVTLVTPRERRQLRTIER 357
Query: 384 FLSKPIR 390
PI+
Sbjct: 358 MTGAPIQ 364
>gi|109091647|ref|XP_001099400.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Macaca
mulatta]
gi|355563050|gb|EHH19612.1| Putative ATP-dependent RNA helicase DDX27 [Macaca mulatta]
gi|355784407|gb|EHH65258.1| Putative ATP-dependent RNA helicase DDX27 [Macaca fascicularis]
Length = 763
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 147/429 (34%), Positives = 240/429 (55%), Gaps = 16/429 (3%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ +NLS + +AI G+K PTPIQ+ +P+ L G D+ A A TG+GKTAAF +P+L+R
Sbjct: 187 FQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLER 246
Query: 85 LNQHVPQGGV-RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L Q V R L+L PTR+L +Q T++L ++ ++ L VGG ++SQ L
Sbjct: 247 LIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAA 306
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
PDI+IATPGRL+ HL L S+E ++ DEAD + F EQ+ +I+ S +RQT+
Sbjct: 307 PDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTM 366
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR--QEEKHAALLYMIRE 261
LFSAT+ + + A L++P + ++ +T ++P L+ F +R +E A++ +
Sbjct: 367 LFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLT 426
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+D ++F TK +++L GL+ +G++ Q R + RF+ + L+
Sbjct: 427 RTFTD-HVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILV 485
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TDVAARG+DI + VIN+ P K +VHRVGR ARAGR G + S V ++ L ++
Sbjct: 486 ATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEI 545
Query: 382 HLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDS 441
P++A ++V+L + K+++ +Y V+ L ++ +E+ S
Sbjct: 546 VKAAKAPVKARILPQDVILKFRDKIEKMEK------DVYA-----VLQLEAEE-KEMQQS 593
Query: 442 SADLNSLQR 450
A +N+ +R
Sbjct: 594 EAQINTAKR 602
>gi|303317380|ref|XP_003068692.1| ATP-dependent rRNA helicase RRP3, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240108373|gb|EER26547.1| ATP-dependent rRNA helicase RRP3, putative [Coccidioides posadasii
C735 delta SOWgp]
Length = 474
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 150/385 (38%), Positives = 219/385 (56%), Gaps = 10/385 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L + ++ A GYK PT IQ +++PL L G D++ +A TGSGKTAAF +P+LQ
Sbjct: 50 FKDLGIIDSLCEACDSLGYKAPTQIQAESIPLALQGRDLIGLAETGSGKTAAFALPILQA 109
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L PQ + L+L+PTR+LA Q + + LG +R +++VGG M SQ L + P
Sbjct: 110 LMDK-PQS-MFGLVLAPTRELAYQISQQFEALGSLISVRCAVIVGGMDMVSQAIALGKKP 167
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
II+ATPGRL+ HL + SL+S++Y+V DEAD L + F L KIL L + R+T L
Sbjct: 168 HIIVATPGRLLDHLENTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKVLPKERRTYL 227
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDT---KISPDLKLAFFTLRQEEKHAALLYMIRE 261
FSAT+ S + +A L +P +R+ V + + L + + K L+Y++ E
Sbjct: 228 FSATMSSKVESLQRASLSNP--LRVSVSSNKYQTVSTLLQNCLIIPHKHKDIYLIYLLNE 285
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
Q +IF T + + L +L R G +G + Q AR + +FR+R L+
Sbjct: 286 F--PGQSVIIFTRTVNETQRLAILLRALGFGAIPLHGQLSQSARLGALGKFRSRSRNILV 343
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TDVAARG+DIP +D V+N+D P K ++HRVGR ARAG++G AFS VT D+ +
Sbjct: 344 ATDVAARGLDIPSVDLVLNYDLPSDSKTYIHRVGRTARAGKSGRAFSLVTQYDVEIWQRI 403
Query: 382 HLFLSKPIRAAPSE-EEVLLDMDGV 405
L K + E EEV++ D V
Sbjct: 404 EAALGKELDEYKVEKEEVMVLSDRV 428
>gi|114682555|ref|XP_001166506.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 isoform 5 [Pan
troglodytes]
Length = 796
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 139/392 (35%), Positives = 224/392 (57%), Gaps = 4/392 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ +NLS + +AI G+K PTPIQ+ +P+ L G D+ A A TG+GKTAAF +P+L+R
Sbjct: 220 FQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLER 279
Query: 85 LNQHVPQGGV-RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L Q V R L+L PTR+L +Q T++L ++ ++ L VGG ++SQ L
Sbjct: 280 LIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAA 339
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
PDI+IATPGRL+ HL L S+E ++ DEAD + F EQ+ +I+ S +RQT+
Sbjct: 340 PDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTM 399
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR--QEEKHAALLYMIRE 261
LFSAT+ + + A L++P + ++ +T ++P L+ F +R +E A++ +
Sbjct: 400 LFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLT 459
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+D ++F TK +++L GL+ +G++ Q R + RF+ + L+
Sbjct: 460 RTFTD-HVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILV 518
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TDVAARG+DI + VIN+ P K +VHRVGR ARAGR G + S V ++ L ++
Sbjct: 519 ATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEI 578
Query: 382 HLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAI 413
P++A ++V+L + K+++ +
Sbjct: 579 VKAAKAPVKARILPQDVILKFRDKIEKMEKDV 610
>gi|392578929|gb|EIW72056.1| hypothetical protein TREMEDRAFT_41472 [Tremella mesenterica DSM
1558]
Length = 491
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 146/356 (41%), Positives = 213/356 (59%), Gaps = 8/356 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F SL + P + ++ +K PTPIQ + +P L G DV+ +A+TGSGKTAAF +P+LQ+
Sbjct: 48 FASLGIIPELCQSCATLAFKAPTPIQVEAIPSALQGRDVIGLAQTGSGKTAAFSLPILQK 107
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L ++ PQ ALIL+PTR+LA Q + LG +R +++VGG M SQ L++ P
Sbjct: 108 LWEN-PQP-FFALILAPTRELAYQISQQVTSLGSPLGVRTAVIVGGMDMMSQSIALSKRP 165
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
+I+ATPGRLM HL + SLK+V+++V DEAD L M F + KIL + + R T L
Sbjct: 166 HVIVATPGRLMDHLENTKGFSLKNVKFLVMDEADRLLDMDFGPIIDKILKVIPKERNTYL 225
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKIS--PDLKLAFFTLRQEEKHAALLYMIREH 262
FSAT+ + +A+ +A L P VR++V TK S L + L + K LLY++ E
Sbjct: 226 FSATMTTKVAKLQRASLNKP--VRVEVATKYSTVSTLLQHYLLLPLKAKDTHLLYIVTEL 283
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
S +IF T + L+++ R G +G M Q R +++F++ L+
Sbjct: 284 --SSCSMIIFTRTVVDAQRLSIMLRRLGFPAIPLHGQMSQSLRLASLNKFKSGGRSILVA 341
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
TDVA+RG+DIPL+D V+N+D P K +VHRVGR ARAGR+G + + VT D+ L
Sbjct: 342 TDVASRGLDIPLVDLVVNYDMPINSKDYVHRVGRTARAGRSGKSITMVTQYDVEIL 397
>gi|399546760|ref|YP_006560068.1| ATP-dependent RNA helicase rhlE [Marinobacter sp. BSs20148]
gi|399162092|gb|AFP32655.1| ATP-dependent RNA helicase rhlE [Marinobacter sp. BSs20148]
Length = 444
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 136/364 (37%), Positives = 212/364 (58%), Gaps = 4/364 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F SL LS + RA +GY+ P+PIQ K +P +L+G DV+A A+TG+GKTA F++P+LQ
Sbjct: 3 FSSLGLSEPLVRATLDQGYETPSPIQLKAIPAVLAGKDVMAAAQTGTGKTAGFVLPILQM 62
Query: 85 LNQHVPQG-GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L Q+ G G R LIL+PTR+LA Q RY R +++ GG + Q +L +
Sbjct: 63 LEQNPRTGKGPRVLILTPTRELAAQVHDSVNLYSRYVPTRAAVVFGGVKINPQMMKLRKG 122
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
D+++ATPGRLM L + + VE++V DEAD + MGF + KIL L RQ+L
Sbjct: 123 LDVLVATPGRLMD-LYQQNAVRFNEVEFLVLDEADRMLDMGFIRDIRKILAMLPAKRQSL 181
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
LFSAT + + AK L DP + + V + + + + + Q +K A L ++R++
Sbjct: 182 LFSATFSNEIRTLAKGLLNDPVQIDVAVRNTTAESVIQSVYPVDQSQKTALLSKLVRDN- 240
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
S +Q L+F TKH L ++G+ + +G+ Q AR ++ F+ L+ T
Sbjct: 241 -SWEQVLVFTRTKHGANRLTEKLGKDGITAAAIHGNKSQGARTRALAEFKQGDIRVLVAT 299
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHL 383
D+AARG+DI L V+N++ P P+ +VHR+GR RAG +G A S V++++++ L+ +
Sbjct: 300 DIAARGLDIKQLPQVVNFELPNVPEDYVHRIGRTGRAGESGHALSLVSADELSMLVGIEK 359
Query: 384 FLSK 387
+ K
Sbjct: 360 LIKK 363
>gi|221043088|dbj|BAH13221.1| unnamed protein product [Homo sapiens]
Length = 765
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 139/392 (35%), Positives = 224/392 (57%), Gaps = 4/392 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ +NLS + +AI G+K PTPIQ+ +P+ L G D+ A A TG+GKTAAF +P+L+R
Sbjct: 189 FQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLER 248
Query: 85 LNQHVPQGGV-RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L Q V R L+L PTR+L +Q T++L ++ ++ L VGG ++SQ L
Sbjct: 249 LIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAA 308
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
PDI+IATPGRL+ HL L S+E ++ DEAD + F EQ+ +I+ S +RQT+
Sbjct: 309 PDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTM 368
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR--QEEKHAALLYMIRE 261
LFSAT+ + + A L++P + ++ +T ++P L+ F +R +E A++ +
Sbjct: 369 LFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLT 428
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+D ++F TK +++L GL+ +G++ Q R + RF+ + L+
Sbjct: 429 RTFTD-HVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILV 487
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TDVAARG+DI + VIN+ P K +VHRVGR ARAGR G + S V ++ L ++
Sbjct: 488 ATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEI 547
Query: 382 HLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAI 413
P++A ++V+L + K+++ +
Sbjct: 548 VKAAKAPVKARILPQDVILKFRDKIEKMEKDV 579
>gi|167748398|ref|ZP_02420525.1| hypothetical protein ANACAC_03142 [Anaerostipes caccae DSM 14662]
gi|167652390|gb|EDR96519.1| DEAD/DEAH box helicase [Anaerostipes caccae DSM 14662]
Length = 466
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 130/372 (34%), Positives = 219/372 (58%), Gaps = 10/372 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ LN++ + +A+K G++ +PIQ +P++L G D+V A+TG+GKTAAF +P+L++
Sbjct: 15 FDELNINDKILKAVKEMGFEAASPIQGAAIPVVLEGRDIVGQAQTGTGKTAAFGIPLLEK 74
Query: 85 LNQHV--PQGGVRALILSPTRDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEELA 141
++ V PQ A+IL PTR+LA+Q ++L ++ ++ + GG ++ +Q L
Sbjct: 75 MDTKVKKPQ----AMILCPTRELAIQVADEIRKLAKFMHGAKVLPIYGGQNITNQIRSLK 130
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+II+ TPGR+M H+ + L+ ++ VV DEAD + MGF E + IL ++ E RQ
Sbjct: 131 TGANIIVGTPGRIMDHMRR-HTLKLEDLKMVVLDEADEMLNMGFREDIESILKEVPEERQ 189
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
TLLFSAT+P A+ + K +D L+++ P+++ ++ +R ++K L ++
Sbjct: 190 TLLFSATMPKAILDITKKYQKDSKLIKVVRKELTVPNIEQYYYEVRPKQKVEVLCRLLDM 249
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
H S + +++F +TK V+ + + G +GD+ Q R + FR + L+
Sbjct: 250 H--SPKLSIVFCNTKRMVDEVTGELKGRGYFAEGIHGDLKQSQRDRVMKSFRGGRVDILV 307
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TDVAARGID+ +D V N+D P + +VHR+GR RAGRTG AF+FV +++ L D+
Sbjct: 308 ATDVAARGIDVDDVDAVFNYDLPQDDEFYVHRIGRTGRAGRTGNAFTFVAGKEIYKLRDV 367
Query: 382 HLFLSKPIRAAP 393
+ I+A P
Sbjct: 368 QRYCKTKIKARP 379
>gi|169598332|ref|XP_001792589.1| hypothetical protein SNOG_01967 [Phaeosphaeria nodorum SN15]
gi|118595361|sp|Q0V1Z7.1|DRS1_PHANO RecName: Full=ATP-dependent RNA helicase DRS1
gi|111069059|gb|EAT90179.1| hypothetical protein SNOG_01967 [Phaeosphaeria nodorum SN15]
Length = 808
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 144/359 (40%), Positives = 209/359 (58%), Gaps = 12/359 (3%)
Query: 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPML 82
G F +++LS + + + G+ PTPIQ K +P+ + G DVV A TGSGKTAAFL+P+L
Sbjct: 285 GSFHAMSLSRPIQKGLAAIGFTEPTPIQAKAIPIAMQGKDVVGGAETGSGKTAAFLIPIL 344
Query: 83 QRL---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139
+RL + VP R I PTR+LA+Q +L +TD+ +LL GG S Q
Sbjct: 345 ERLLYRPKKVPT--TRVAIFMPTRELAVQCFNVATKLASFTDITFALLAGGFSSREQEVM 402
Query: 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSEN 199
L PD++IATPGR + H+ ++ +E +V DEAD + GF QL++IL + ++
Sbjct: 403 LKTRPDVVIATPGRFIDHMHNTAAFQVEHLEILVLDEADRMLEEGFETQLNEILTTIPKS 462
Query: 200 RQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTK--ISPDLKLAFFTLRQ--EEKHAAL 255
RQT+LFSAT+ S + + + G+ P VRL VD K L F LRQ E+K A
Sbjct: 463 RQTMLFSATMTSTVDKLIRIGMDKP--VRLMVDAKKHTVKGLTQEFIRLRQGKEDKRLAY 520
Query: 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRAR 315
L I E I + ++ +IF K + V+F GL+ S +G+M Q+ R V FR+
Sbjct: 521 LMYICEKIYT-ERVIIFFRQKKEAHRVRVVFALCGLKASELHGNMSQEQRIQAVEAFRSG 579
Query: 316 KTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
K+ +L+ TDVA+RG+DI + VIN++ P +I++HRVGR ARAGR+G A + D
Sbjct: 580 KSSYLLATDVASRGLDIKNVSTVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPD 638
>gi|121611662|ref|YP_999469.1| DEAD/DEAH box helicase domain-containing protein [Verminephrobacter
eiseniae EF01-2]
gi|121556302|gb|ABM60451.1| DEAD/DEAH box helicase domain protein [Verminephrobacter eiseniae
EF01-2]
Length = 581
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 135/378 (35%), Positives = 219/378 (57%), Gaps = 11/378 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ LNL+P + +A+ GY+ PTPIQ + +P +L+G D++A A+TG+GKTAAF +P+L R
Sbjct: 3 FDELNLAPAILKAVHETGYETPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPILHR 62
Query: 85 LNQHVPQG-------GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF 137
L+Q+ P G+RAL+L+PTR+LA Q + +E G+Y + +++ GG M Q
Sbjct: 63 LSQN-PAAKNKFGGKGIRALVLTPTRELAAQVEESVREYGKYLAIDSTVVFGGVGMAPQI 121
Query: 138 EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS 197
E L + DI++ATPGRL+ L + + L SV+ +V DEAD + MGF + + K+L +
Sbjct: 122 ERLQRGVDILVATPGRLLD-LQQQGFVDLASVQVLVLDEADRMLDMGFIQDVKKVLALVP 180
Query: 198 ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLY 257
++Q+LLFSAT + E A + L++P +++ + + + +K L +
Sbjct: 181 GDKQSLLFSATFSDDIRELANSLLKNPQSIQVTPRNSTVQRIAQVIHPVGRGKKKQVLRH 240
Query: 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKT 317
+I +H S Q L+F TK + + G+ +G+ Q AR ++ F+
Sbjct: 241 IIEQHDWS--QVLVFTRTKFGANSVAEFLTKNGVNAMALHGNKSQSARTQALADFKNGDI 298
Query: 318 MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAY 377
L+ TD+AARGIDI L +V+N++ P P+ +VHR+GR RAG TG A S V ++ +
Sbjct: 299 RALVATDIAARGIDIDELPHVVNYEIPNVPEDYVHRIGRTGRAGATGQAVSLVCMDEEGF 358
Query: 378 LLDLHLFLSKPIRAAPSE 395
++D+ F + I P E
Sbjct: 359 MMDIERFTQQQIPVQPIE 376
>gi|40225538|gb|AAH11927.2| DDX27 protein, partial [Homo sapiens]
gi|48257213|gb|AAH16060.2| DDX27 protein, partial [Homo sapiens]
Length = 767
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 139/392 (35%), Positives = 224/392 (57%), Gaps = 4/392 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ +NLS + +AI G+K PTPIQ+ +P+ L G D+ A A TG+GKTAAF +P+L+R
Sbjct: 191 FQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLER 250
Query: 85 LNQHVPQGGV-RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L Q V R L+L PTR+L +Q T++L ++ ++ L VGG ++SQ L
Sbjct: 251 LIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAA 310
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
PDI+IATPGRL+ HL L S+E ++ DEAD + F EQ+ +I+ S +RQT+
Sbjct: 311 PDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTM 370
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR--QEEKHAALLYMIRE 261
LFSAT+ + + A L++P + ++ +T ++P L+ F +R +E A++ +
Sbjct: 371 LFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLT 430
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+D ++F TK +++L GL+ +G++ Q R + RF+ + L+
Sbjct: 431 RTFTD-HVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILV 489
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TDVAARG+DI + VIN+ P K +VHRVGR ARAGR G + S V ++ L ++
Sbjct: 490 ATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEI 549
Query: 382 HLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAI 413
P++A ++V+L + K+++ +
Sbjct: 550 VKAAKAPVKARILPQDVILKFRDKIEKMEKDV 581
>gi|399027814|ref|ZP_10729231.1| DNA/RNA helicase, superfamily II [Flavobacterium sp. CF136]
gi|398074604|gb|EJL65744.1| DNA/RNA helicase, superfamily II [Flavobacterium sp. CF136]
Length = 418
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 136/363 (37%), Positives = 220/363 (60%), Gaps = 9/363 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE L+LS ++ +A+ +GY PTPIQ +++P++LSG D++ A+TG+GKTAAF +P++ +
Sbjct: 3 FEDLSLSKSIQKAVFEEGYLNPTPIQEQSIPIVLSGKDLIGCAQTGTGKTAAFAIPIIHQ 62
Query: 85 LNQHVPQG----GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
L++ V +RALI++PTR+LA+Q + + G+YT+L + GG S Q + L
Sbjct: 63 LHRIVGSTKKAKQIRALIVTPTRELAVQIGQNFETYGKYTNLTQLTIFGGVSQNPQVDAL 122
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
+ DI++ATPGRL+ L + + L + +V DEAD + MGF + KI+ +NR
Sbjct: 123 KKGVDILVATPGRLLD-LQKQGFLDLDHLHTLVLDEADQMLDMGFVNDVKKIVKLTPKNR 181
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSAT+P A+ E A+ L DP V + + + +++ + + + EK L ++I+
Sbjct: 182 QTLLFSATMPIAIRELAEMFLTDPETVTVSPVSSTAENVEQRVYFVDKTEKRNLLYHLIK 241
Query: 261 -EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319
E +S+ L+F TKH + + R+ + +GD Q+AR+ + F+ ++
Sbjct: 242 TEELSN---ILVFSRTKHGADNVVKALRKNNIAAEAIHGDKSQNARQRVLDAFKNKEVGV 298
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLL 379
L+ TD+AARGIDI L VIN+D P P+ +VHR+GR RAG G A SF + +++ Y
Sbjct: 299 LVATDIAARGIDIDQLPFVINFDLPNIPETYVHRIGRTGRAGNGGIAISFCSKDELPYWK 358
Query: 380 DLH 382
D+
Sbjct: 359 DIQ 361
>gi|189342956|gb|ACD91989.1| DEAD box polypeptide 27 [Homo sapiens]
gi|313883628|gb|ADR83300.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [synthetic construct]
Length = 765
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 139/392 (35%), Positives = 224/392 (57%), Gaps = 4/392 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ +NLS + +AI G+K PTPIQ+ +P+ L G D+ A A TG+GKTAAF +P+L+R
Sbjct: 189 FQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLER 248
Query: 85 LNQHVPQGGV-RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L Q V R L+L PTR+L +Q T++L ++ ++ L VGG ++SQ L
Sbjct: 249 LIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAA 308
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
PDI+IATPGRL+ HL L S+E ++ DEAD + F EQ+ +I+ S +RQT+
Sbjct: 309 PDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTM 368
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR--QEEKHAALLYMIRE 261
LFSAT+ + + A L++P + ++ +T ++P L+ F +R +E A++ +
Sbjct: 369 LFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLT 428
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+D ++F TK +++L GL+ +G++ Q R + RF+ + L+
Sbjct: 429 RTFTD-HVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILV 487
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TDVAARG+DI + VIN+ P K +VHRVGR ARAGR G + S V ++ L ++
Sbjct: 488 ATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEI 547
Query: 382 HLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAI 413
P++A ++V+L + K+++ +
Sbjct: 548 VKAAKAPVKARILPQDVILKFRDKIEKMEKDV 579
>gi|408355702|ref|YP_006844233.1| ATP-dependent RNA helicase [Amphibacillus xylanus NBRC 15112]
gi|407726473|dbj|BAM46471.1| ATP-dependent RNA helicase [Amphibacillus xylanus NBRC 15112]
Length = 483
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 125/354 (35%), Positives = 213/354 (60%), Gaps = 5/354 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ LN+S + +A+ G++ TPIQ +T+PL L G DV+ A+TG+GKTAAF +PM+++
Sbjct: 4 FQELNISAPILKALSNMGFEEATPIQEQTIPLGLKGEDVIGQAQTGTGKTAAFGIPMIEQ 63
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
+ + Q ++ L+++PTR+LA+Q + +G++ +R + GG M+ Q L + P
Sbjct: 64 IEKK--QRKIQGLVVAPTRELAIQVSEEIHRIGKFKGIRSLPIYGGQQMQRQIRSLKEGP 121
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
I++ATPGRL+ H+ + +++ V+ +V DEAD + MGF + + +IL + RQTLL
Sbjct: 122 HIVVATPGRLLDHMRR-KTINISDVKTIVLDEADEMLNMGFIDDIREILKMIPHERQTLL 180
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P + + A +R+P V++ +++ F + +++K AL ++ H+
Sbjct: 181 FSATMPKEIRQIASTMMREPKEVKVKSKQLSVENIEQRFIEVHEKQKFDALTNLLDIHVP 240
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
+ +IF TK V+ L + G +GD+ Q R +++F+ + L+ TD
Sbjct: 241 --ELAIIFGRTKKRVDELTDGLQARGFRAEGIHGDLTQGKRMSVLNKFKNGRIEILVATD 298
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
VAARG+DI + +V N+D P P+ +VHR+GR RAG+TG A SF+T +M +L
Sbjct: 299 VAARGLDISNVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAISFITPREMPHL 352
>gi|386400169|ref|ZP_10084947.1| DNA/RNA helicase, superfamily II [Bradyrhizobium sp. WSM1253]
gi|385740795|gb|EIG60991.1| DNA/RNA helicase, superfamily II [Bradyrhizobium sp. WSM1253]
Length = 518
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 141/365 (38%), Positives = 214/365 (58%), Gaps = 7/365 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L+ + RA+ + Y PTPIQ +T+P L+G DVV +A+TG+GKTA+F +P+L R
Sbjct: 10 FQDFGLAEPIARALTEENYVTPTPIQAQTIPTALTGRDVVGIAQTGTGKTASFALPILHR 69
Query: 85 L--NQHVPQG-GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L N+ PQ R L+LSPTR+L+ Q L GR+ L +L +GG M Q L
Sbjct: 70 LLENRIKPQPKTTRVLVLSPTRELSGQILDSFNAYGRHIRLSSTLAIGGVPMGRQVRSLM 129
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
Q ++++ATPGRL+ L + + L SVE++V DEAD + MGF + KI+ +L RQ
Sbjct: 130 QGVEVLVATPGRLLD-LVQSNGLKLGSVEFLVLDEADRMLDMGFINDIRKIVAKLPIKRQ 188
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
TL FSAT+P +AE A A LRDP V + + ++ + K A L ++++
Sbjct: 189 TLFFSATMPKDIAELADAMLRDPARVAVTPVSSTVERIQQRIIQVDFSAKPALLAKLLKD 248
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ + L+F TKH + + + G+ S +G+ Q+ R+ +++FR + L+
Sbjct: 249 EPVN--RALVFTRTKHGADKVVKTLEKAGIPASAIHGNKSQNHRERTLAQFRTGEIRTLV 306
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVT-SEDMAYLLD 380
TD+AARGID+ + +VIN+D P P+ +VHR+GR ARAG GTA S V E++AYL D
Sbjct: 307 ATDIAARGIDVDGITHVINFDLPNVPETYVHRIGRTARAGAEGTAISLVAGGEELAYLRD 366
Query: 381 LHLFL 385
+ +
Sbjct: 367 IERLI 371
>gi|423229947|ref|ZP_17216352.1| hypothetical protein HMPREF1063_02172 [Bacteroides dorei
CL02T00C15]
gi|423247037|ref|ZP_17228088.1| hypothetical protein HMPREF1064_04294 [Bacteroides dorei
CL02T12C06]
gi|392632157|gb|EIY26120.1| hypothetical protein HMPREF1063_02172 [Bacteroides dorei
CL02T00C15]
gi|392633650|gb|EIY27591.1| hypothetical protein HMPREF1064_04294 [Bacteroides dorei
CL02T12C06]
Length = 434
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 135/359 (37%), Positives = 216/359 (60%), Gaps = 5/359 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L+L + +A+++ GY PTPIQ + +P++L G D++ A+TG+GKTAAF +P++QR
Sbjct: 3 FKELDLIEPILKALQQTGYTTPTPIQEQAIPVLLKGKDLLGCAQTGTGKTAAFAIPLIQR 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L Q + G++ALIL+PTR+LA+Q + + +YT ++ +++ GG ++Q + L +
Sbjct: 63 LYQSDHKKGIKALILTPTRELAIQIGENFDQYAKYTGVKHAVIFGGVPQKAQVDALKRGV 122
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
++IATPGRL+ L +SLK +EY V DEAD + MGF + K+L + RQTL
Sbjct: 123 QVLIATPGRLL-DLQSQGCISLKGLEYFVLDEADRMLDMGFIHDIKKVLKLIPARRQTLF 181
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLD-VDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
FSAT+PS + + A + L +P V + V + + + +F ++E+K L + I
Sbjct: 182 FSATMPSEIEKLADSMLTNPKKVEVTPVSSTVDTIQQSVYFVEKKEKKDLLLHLLKNPEI 241
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
S LIF TKH + L + + + +G+ Q+AR+ ++ F+ T LI T
Sbjct: 242 ES---VLIFTRTKHGADKLAKILNKSEIGAEAIHGNKSQNARQRALTNFKDHTTRVLIAT 298
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
D+AARGID+ L +VIN++ P + +VHR+GR RAG G A SF SE++ YL D+
Sbjct: 299 DIAARGIDVNQLSHVINYELPNISETYVHRIGRTGRAGHDGIAISFCESEELPYLKDIQ 357
>gi|302306296|ref|NP_982501.2| AAL041Cp [Ashbya gossypii ATCC 10895]
gi|442570013|sp|Q75EW9.2|RRP3_ASHGO RecName: Full=ATP-dependent rRNA helicase RRP3
gi|299788450|gb|AAS50325.2| AAL041Cp [Ashbya gossypii ATCC 10895]
gi|374105700|gb|AEY94611.1| FAAL041Cp [Ashbya gossypii FDAG1]
Length = 486
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 145/396 (36%), Positives = 219/396 (55%), Gaps = 10/396 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L+L P + A + PTPIQ K +P L G D++ +A+TGSGKTAAF +P+L R
Sbjct: 68 FRELDLVPELIEACDNLNFTKPTPIQSKAIPPALQGKDIIGLAQTGSGKTAAFAIPILNR 127
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L Q A IL+PTR+LA Q + LG +R + +VGG +M Q +L + P
Sbjct: 128 LWHD--QQPYYACILAPTRELAQQIKETFDSLGSLMGVRTTCIVGGMNMMDQARDLMRKP 185
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL-SENRQTL 203
IIIATPGRLM HL + +L+ ++++V DEAD L M F L +IL + ++ R T
Sbjct: 186 HIIIATPGRLMDHLENTKGFALRKLQFLVMDEADRLLDMEFGPVLDRILKNIPTKGRTTY 245
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
LFSAT+ S + + +A L +P + + L + K+ L+Y++ E I
Sbjct: 246 LFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLIVVPGGLKNTFLIYLLNEFI 305
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+ T++F TK + E ++ L + +GD++Q+ R + F+A K L+ T
Sbjct: 306 G--KTTIVFTRTKANAERISGLCNLLEFSATALHGDLNQNQRTGALDLFKAGKKSILVAT 363
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHL 383
DVAARG+DIP +D VIN+D P K ++HRVGR ARAGR+G + S V+ D+ +L +
Sbjct: 364 DVAARGLDIPSVDLVINYDIPVDSKSYIHRVGRTARAGRSGKSVSLVSQYDLELILRIEE 423
Query: 384 FLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETI 419
L K + ++ ++L + + K ANGE I
Sbjct: 424 VLGKKLPKENVDKSIVLSLRDSVDK-----ANGEVI 454
>gi|32425487|gb|AAH09304.2| DDX27 protein, partial [Homo sapiens]
Length = 769
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 139/392 (35%), Positives = 224/392 (57%), Gaps = 4/392 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ +NLS + +AI G+K PTPIQ+ +P+ L G D+ A A TG+GKTAAF +P+L+R
Sbjct: 193 FQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLER 252
Query: 85 LNQHVPQGGV-RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L Q V R L+L PTR+L +Q T++L ++ ++ L VGG ++SQ L
Sbjct: 253 LIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAA 312
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
PDI+IATPGRL+ HL L S+E ++ DEAD + F EQ+ +I+ S +RQT+
Sbjct: 313 PDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTM 372
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR--QEEKHAALLYMIRE 261
LFSAT+ + + A L++P + ++ +T ++P L+ F +R +E A++ +
Sbjct: 373 LFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLT 432
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+D ++F TK +++L GL+ +G++ Q R + RF+ + L+
Sbjct: 433 RTFTD-HVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILV 491
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TDVAARG+DI + VIN+ P K +VHRVGR ARAGR G + S V ++ L ++
Sbjct: 492 ATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEI 551
Query: 382 HLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAI 413
P++A ++V+L + K+++ +
Sbjct: 552 VKAAKAPVKARILPQDVILKFRDKIEKMEKDV 583
>gi|237707985|ref|ZP_04538466.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 9_1_42FAA]
gi|229457971|gb|EEO63692.1| ATP-dependent RNA helicase DeaD [Bacteroides sp. 9_1_42FAA]
Length = 434
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 135/359 (37%), Positives = 216/359 (60%), Gaps = 5/359 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L+L + +A+++ GY PTPIQ + +P++L G D++ A+TG+GKTAAF +P++QR
Sbjct: 3 FKELDLIEPILKALQQTGYTTPTPIQEQAIPVLLKGKDLLGCAQTGTGKTAAFAIPLIQR 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L Q + G++ALIL+PTR+LA+Q + + +YT ++ +++ GG ++Q + L +
Sbjct: 63 LYQSDYKKGIKALILTPTRELAIQIGENFDQYAKYTGVKHAVIFGGVPQKAQVDALKRGV 122
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
++IATPGRL+ L +SLK +EY V DEAD + MGF + K+L + RQTL
Sbjct: 123 QVLIATPGRLL-DLQSQGCISLKGLEYFVLDEADRMLDMGFIHDIKKVLKLIPARRQTLF 181
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLD-VDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
FSAT+PS + + A + L +P V + V + + + +F ++E+K L + I
Sbjct: 182 FSATMPSEIEKLADSMLTNPKKVEVTPVSSTVDTIQQSVYFVEKKEKKDLLLHLLKNPEI 241
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
S LIF TKH + L + + + +G+ Q+AR+ ++ F+ T LI T
Sbjct: 242 ES---VLIFTRTKHGADKLAKILNKSEIGAEAIHGNKSQNARQRALTNFKDHTTRVLIAT 298
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
D+AARGID+ L +VIN++ P + +VHR+GR RAG G A SF SE++ YL D+
Sbjct: 299 DIAARGIDVNQLSHVINYELPNISETYVHRIGRTGRAGHDGIAISFCESEELPYLKDIQ 357
>gi|251796145|ref|YP_003010876.1| DEAD/DEAH box helicase [Paenibacillus sp. JDR-2]
gi|247543771|gb|ACT00790.1| DEAD/DEAH box helicase domain protein [Paenibacillus sp. JDR-2]
Length = 535
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 131/354 (37%), Positives = 215/354 (60%), Gaps = 5/354 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L P V +AI G++ TPIQ K++P+ ++G+D++ A+TG+GKTAAF +P++ +
Sbjct: 4 FAEFGLEPKVLQAITELGFEESTPIQDKSIPIAMAGSDMIGQAQTGTGKTAAFGIPLINK 63
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
++ + + + ALI++PTR+LA+Q +L +Y LR + GG + Q L + P
Sbjct: 64 IS--INEERIVALIMTPTRELAIQVADEIGKLTKYKGLRSLPIYGGQEIGRQIRALKKKP 121
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
III TPGRL+ H++ + + L+ V+ VV DEAD + MGF E + IL Q+ E RQTLL
Sbjct: 122 QIIIGTPGRLLDHINR-KTIKLEDVQTVVLDEADEMLDMGFMEDIQSILKQVPEERQTLL 180
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P + + A+ L++P V + +P ++ +F + + +K AL ++ +
Sbjct: 181 FSATMPPNIQKLAQQFLKNPEHVAVISKQVTAPTIQQNYFEVHERQKFEALCRLL--DME 238
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
S + +IF TK V+ L+ ++ G +GD+ Q+ R + +FR L+ TD
Sbjct: 239 SPELAIIFGRTKRRVDELSEGLQKRGYTADGLHGDLSQNQRDNVMRKFRDGSIDVLVATD 298
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
VAARG+D+ + +VIN+D P P+ +VHR+GR RAG+ G+A+SFVT ++ +L
Sbjct: 299 VAARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGSAYSFVTPREVDHL 352
>gi|145539279|ref|XP_001455334.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124423133|emb|CAK87937.1| unnamed protein product [Paramecium tetraurelia]
Length = 451
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 136/385 (35%), Positives = 230/385 (59%), Gaps = 8/385 (2%)
Query: 14 EKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGK 73
++++++ S F+ L + + A ++ GYK+PTPIQ++++P L D++ +A TGSGK
Sbjct: 3 QQEEQQISSVTFKELGVCEELSSACEKLGYKIPTPIQQQSLPYTLQKKDIIGLAETGSGK 62
Query: 74 TAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSM 133
T AF +P+LQ L + PQ ALILSPTR+L +Q + + +G L+ +++GG
Sbjct: 63 TLAFGLPILQHLLAN-PQP-YYALILSPTRELCVQIQEHFQAIGASIALKSVVILGGMDP 120
Query: 134 ESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKIL 193
+Q + LAQ P III TPG++++HL + +LK ++++V DEAD L M F +++ IL
Sbjct: 121 LAQAKALAQKPHIIIGTPGKILYHLENTKGFNLKQLKFLVLDEADKLLNMDFEREINAIL 180
Query: 194 GQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKIS--PDLKLAFFTLRQEEK 251
+ + R T LFSAT+ + +++ +A L+DP V+++V +K L+ + + + K
Sbjct: 181 DIIPKERNTYLFSATMTNKVSKLQRASLKDP--VKIEVSSKYQTVSTLQQNYLFVPDKYK 238
Query: 252 HAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSR 311
L+Y++ E + +++FV+T + +L R G + +G M Q R ++
Sbjct: 239 ETYLVYLLNEL--AGLTSIVFVATCQMAIKITLLLRNLGFQAIAIHGQMSQAKRLSSFNK 296
Query: 312 FRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVT 371
F+++++ LI TDVA+RG+DIP +D V+N+D P K +VHRVGR ARAG++G A S VT
Sbjct: 297 FKSKESNLLIATDVASRGLDIPFVDLVLNFDIPQNAKEYVHRVGRTARAGKSGKAISLVT 356
Query: 372 SEDMAYLLDLHLFLSKPIRAAPSEE 396
D+ + + K + P EE
Sbjct: 357 QYDVEMYQKIEQLIEKELSQYPLEE 381
>gi|409083507|gb|EKM83864.1| hypothetical protein AGABI1DRAFT_117335, partial [Agaricus bisporus
var. burnettii JB137-S8]
Length = 701
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 140/368 (38%), Positives = 217/368 (58%), Gaps = 12/368 (3%)
Query: 19 KSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78
K+ F S+NLS + +A+ G+ PTPIQ T+P+ L G DVV A TGSGKTAAF+
Sbjct: 190 KNTHNSFLSMNLSRPLMKAVTNLGFNKPTPIQASTIPVALLGKDVVGNAVTGSGKTAAFM 249
Query: 79 VPMLQRL---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMES 135
+PM++RL + +R L+L PTR+LA+Q + +L +TD+R+ L+VGG S++S
Sbjct: 250 IPMIERLLFREKGKKAAAIRCLVLVPTRELAVQCYEVGTKLSIHTDIRLCLVVGGLSLKS 309
Query: 136 QFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQ 195
Q +L PDI+IATPGRL+ H+ SL +++ +V DEAD + GF+++L +I+
Sbjct: 310 QEADLRSRPDIVIATPGRLIDHIRNSASFSLDALDILVIDEADRILSEGFSDELTEIIKS 369
Query: 196 LSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTK--ISPDLKLAFFTLR---QEE 250
+RQT+LFSAT+ ++ E + L P VRL VD K + L F +R + E
Sbjct: 370 CPRSRQTMLFSATMTDSVDELVRVSLEKP--VRLFVDPKRTTARGLIQEFVRVRAGKEAE 427
Query: 251 KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVS 310
+ A L+ + R ++ ++F+ +K + ++F G++ +GD+ Q+ R +
Sbjct: 428 RSAMLVTLCRRTFK--RRVIVFLRSKKLAHQMRIVFSLLGMKCEELHGDLSQEQRLRALQ 485
Query: 311 RFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFV 370
FR FL+ TD+A+RG+DI ++ VIN+D P + ++HRVGR ARAGR G A + V
Sbjct: 486 LFRDDAVDFLMATDLASRGLDIKGVETVINYDMPTQLAQYLHRVGRTARAGRGGRAVTLV 545
Query: 371 TSEDMAYL 378
D L
Sbjct: 546 GEADRKML 553
>gi|321262460|ref|XP_003195949.1| ATP-dependent RNA helicase [Cryptococcus gattii WM276]
gi|317462423|gb|ADV24162.1| ATP-dependent RNA helicase, putative [Cryptococcus gattii WM276]
Length = 484
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 147/361 (40%), Positives = 215/361 (59%), Gaps = 8/361 (2%)
Query: 20 SKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLV 79
S + F L +SP + RA G+K P+ IQ + +P L G D++ +A+TGSGKTAAF +
Sbjct: 35 SHNKSFADLGISPELCRACASMGFKKPSDIQAEAIPHALEGKDIIGLAQTGSGKTAAFSL 94
Query: 80 PMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139
P+LQ L ++ PQ AL+L+PTR+LA Q + LG +R ++LVGG M SQ
Sbjct: 95 PILQTLWEN-PQP-FFALVLAPTRELAYQISQQITSLGSGIGVRTAVLVGGMDMMSQSIA 152
Query: 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSEN 199
L++ P +I+ATPGRLM HL + SLKS++Y+V DEAD L + F + K+L + +
Sbjct: 153 LSKRPHVIVATPGRLMDHLENTKGFSLKSLKYLVMDEADRLLDLDFGPIIDKVLKVIPKE 212
Query: 200 RQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKIS--PDLKLAFFTLRQEEKHAALLY 257
R T LFSAT+ + +A+ +A L P VR++V +K S L + L + K + LLY
Sbjct: 213 RNTYLFSATMTTKVAKLQRASLNKP--VRVEVSSKYSTVSTLLQHYLLLPLKNKDSYLLY 270
Query: 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKT 317
+ E SS +IF T + L+++ R G +G M Q R +++F++
Sbjct: 271 LANELSSSSM--IIFTRTVADSQRLSIILRRLGFPAIPLHGQMTQSLRLASLNKFKSGGR 328
Query: 318 MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAY 377
L+ TDVA+RG+DIPL+D VIN+D P K +VHRVGR ARAGR+G + + VT D+
Sbjct: 329 SILVATDVASRGLDIPLVDLVINYDMPTNSKDYVHRVGRTARAGRSGKSITLVTQYDVEI 388
Query: 378 L 378
L
Sbjct: 389 L 389
>gi|383830775|ref|ZP_09985864.1| DNA/RNA helicase, superfamily II [Saccharomonospora xinjiangensis
XJ-54]
gi|383463428|gb|EID55518.1| DNA/RNA helicase, superfamily II [Saccharomonospora xinjiangensis
XJ-54]
Length = 588
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 137/348 (39%), Positives = 195/348 (56%), Gaps = 6/348 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F +L L P + RA+ GY+ PTPIQ +P +L GADVV A TG+GKTAAF +P+L R
Sbjct: 38 FGTLGLRPELLRALSDLGYEEPTPIQMAAIPALLDGADVVGQAATGTGKTAAFSLPVLHR 97
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L G AL+L PTR+LA Q + GR+ +R+ + GG M Q L
Sbjct: 98 LADLDRNGKPSALVLVPTRELAAQVCEAMYRYGRHLGIRVVPVYGGQPMGRQLRSLETGV 157
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
D+++ATPGR + HLS + L + VV DEAD + MGFAE + IL Q +RQT+L
Sbjct: 158 DVVVATPGRALDHLSR-GSLDLSKLRMVVLDEADEMLDMGFAEDIDAILDQTPTDRQTML 216
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPD---LKLAFFTLRQEEKHAALLYMIRE 261
FSAT+P ++ + LR+P + L +S D + + + + K AAL ++
Sbjct: 217 FSATMPPRISGMVRRYLREPRRIELTRAESMSGDAAAVTQVAYVVPRGHKPAALGRVL-- 274
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
I + + T++F T+ V+ L + G +G MDQ R V R RA ++
Sbjct: 275 DIEAPEATVVFCRTREEVDRLTEIMNGRGYRAEALHGGMDQSQRNRVVGRLRAGTADLVV 334
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSF 369
TDVAARG+DI L +V+N+D P P+I+VHR+GR RAGR G+A +
Sbjct: 335 ATDVAARGLDIDQLTHVVNYDVPSAPEIYVHRIGRVGRAGREGSAITL 382
>gi|377819861|ref|YP_004976232.1| DEAD/DEAH box helicase [Burkholderia sp. YI23]
gi|357934696|gb|AET88255.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. YI23]
Length = 528
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 135/374 (36%), Positives = 211/374 (56%), Gaps = 12/374 (3%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+SL LS + RA+ GY PTPIQ + +P +L G D++A A+TG+GKTA F +P+LQR
Sbjct: 3 FDSLGLSEPLLRAVNELGYSTPTPIQLQAIPAVLKGGDLLAGAQTGTGKTAGFTLPILQR 62
Query: 85 LNQHVPQGG---------VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMES 135
L+Q P VRALIL+PTR+LA Q + + G+Y L+ +++ GG +
Sbjct: 63 LSQLGPVSAPAASGAKRPVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINP 122
Query: 136 QFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQ 195
Q + L + DI++ATPGRL+ H+ + + + + +E +V DEAD + MGF + ++L +
Sbjct: 123 QIDALRRGVDIVVATPGRLLDHMQQ-KTIDVSQLEILVLDEADRMLDMGFIHDIKRVLAK 181
Query: 196 LSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAAL 255
L RQ LLFSAT + A + L P L+ + + ++ + ++ K L
Sbjct: 182 LPAKRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAETVEQKIHPVDRDRKRELL 241
Query: 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRAR 315
++IR + + Q L+F TKH L ++G+ +G+ Q AR ++ F+A
Sbjct: 242 THLIRGN--NWFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKAE 299
Query: 316 KTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDM 375
L+ TD+AARGIDI L +V+N+D P P+ +VHR+GR RAG G A S V ++
Sbjct: 300 TLQVLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGAEGEAVSLVCVDEH 359
Query: 376 AYLLDLHLFLSKPI 389
L D+ + +PI
Sbjct: 360 QLLRDIERLIKRPI 373
>gi|322417740|ref|YP_004196963.1| DEAD/DEAH box helicase [Geobacter sp. M18]
gi|320124127|gb|ADW11687.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M18]
Length = 442
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 146/371 (39%), Positives = 218/371 (58%), Gaps = 12/371 (3%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FESLNLS + +AI GY PTPIQ +++PL LSG D++ A+TG+GKTA+F++P L+R
Sbjct: 3 FESLNLSAPLVKAINACGYTEPTPIQAESIPLALSGRDLIGSAQTGTGKTASFVLPALER 62
Query: 85 LNQHVPQ--GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
L P G R L+L+PTR+LA Q + K G++ +R ++GG Q L+Q
Sbjct: 63 LLVPSPARGKGPRILVLTPTRELANQVVDAVKTYGKFMRVRCGSILGGMPYREQMMLLSQ 122
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
DII+ATPGRL+ HL ++ +E +V DEAD + MGF+E + +I RQT
Sbjct: 123 PVDIIVATPGRLIDHLDR-RSINFSRLEMLVLDEADRMLDMGFSEDVDRIAAAAPAERQT 181
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVD----TKISPDLKLAFFTLRQEEKHAALLYM 258
LLF+AT+ A+A+ A+ L+DP VR+ VD T +S + +L T K+ L ++
Sbjct: 182 LLFTATMDDAMAKLAQRLLKDP--VRVAVDGQQLTNLSIEQRL-HVTDDMRHKNRLLQHL 238
Query: 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
+ + +S + +IF +TK + L +G + +GDM Q AR ++ R K
Sbjct: 239 VAD--ASVTKAIIFSATKKDADQLAFELYSQGHAAAALHGDMSQGARNRTITNMRRGKVR 296
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
L+ TDVAARG+D+ + +VIN+D P + +VHR+GR RAG TG A SF + ++AYL
Sbjct: 297 LLVATDVAARGLDVSGISHVINYDLPKFAEDYVHRIGRTGRAGATGIAISFCSMNEVAYL 356
Query: 379 LDLHLFLSKPI 389
+ KP+
Sbjct: 357 DRIERLTGKPL 367
>gi|377831050|ref|ZP_09814038.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus mucosae
LM1]
gi|377555147|gb|EHT16838.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus mucosae
LM1]
Length = 495
Score = 250 bits (638), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 140/394 (35%), Positives = 224/394 (56%), Gaps = 12/394 (3%)
Query: 30 LSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV 89
+S ++ +AIKR GY+ TPIQ +T+P++L+G DV+ A+TG+GKTAAF +P+L+ ++
Sbjct: 1 MSNSLLKAIKRSGYEEATPIQEQTIPMVLNGDDVIGQAQTGTGKTAAFGLPILEHIDPQN 60
Query: 90 PQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIA 149
P ++ALI+SPTR+LA+QT + LG+ ++ ++ GG + Q + L P+I++
Sbjct: 61 P--AIQALIISPTRELAIQTQEELYRLGKDKRAKVQVVYGGADIRRQIKSLKHQPEILVG 118
Query: 150 TPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATL 209
TPGRL H+ + L + +V DEAD + MGF E + I+ + RQTLLFSAT+
Sbjct: 119 TPGRLRDHIRR-HTVDLSQINTLVLDEADEMLNMGFLEDIEAIINETPATRQTLLFSATM 177
Query: 210 PSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFT-LRQEEKHAALLYMIREHISSDQQ 268
P + +++P VR+ +++ DL ++ R EK + +I +
Sbjct: 178 PPEIKRIGMQFMKEPKTVRIQAQ-ELTTDLVDQYYVRARDYEKFDIMTRLI--DVQDPDL 234
Query: 269 TLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAAR 328
T++F TK V+ L+ G + +GD+ QD R + RF+ K L+ TDVAAR
Sbjct: 235 TIVFGRTKRRVDELSKGLTARGYNAAGIHGDLTQDRRTKIMKRFKEGKLDILVATDVAAR 294
Query: 329 GIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSK- 387
G+DI + +V N+D P P +VHR+GR RAG G + +FVT +M YL ++ L+K
Sbjct: 295 GLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMDYLHEIEK-LTKV 353
Query: 388 ---PIRAAPSEEEVLLDMDGVMSKIDQAIANGET 418
P++ EE + +S+ID+ IA T
Sbjct: 354 RMLPLKPPTEEEAFKGQLASAVSEIDELIAQPST 387
>gi|383769279|ref|YP_005448342.1| dead-box ATP-dependent RNA helicase [Bradyrhizobium sp. S23321]
gi|381357400|dbj|BAL74230.1| dead-box ATP-dependent RNA helicase [Bradyrhizobium sp. S23321]
Length = 526
Score = 250 bits (638), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 142/365 (38%), Positives = 214/365 (58%), Gaps = 7/365 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L+ + RA+ + Y PTPIQ +T+P L+G DVV +A+TG+GKTA+F +P+L R
Sbjct: 18 FQDFGLAEPLARALAEEKYVTPTPIQAQTIPTALTGRDVVGIAQTGTGKTASFALPILHR 77
Query: 85 L--NQHVPQG-GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L N+ PQ R L+LSPTR+L+ Q L GR+ L +L +GG M Q L
Sbjct: 78 LLENRIKPQPKTCRVLVLSPTRELSGQILDSFNAYGRHIRLSSTLAIGGVPMGRQVRSLM 137
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
Q D+++ATPGRL+ L + + L SVE++V DEAD + MGF + KI+ +L RQ
Sbjct: 138 QGVDVLVATPGRLLD-LVQSNGLKLSSVEFLVLDEADRMLDMGFINDIRKIVAKLPIKRQ 196
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
TL FSAT+P +AE A A LRDP V + + ++ + K A L ++++
Sbjct: 197 TLFFSATMPKDIAELADAMLRDPARVAVTPVSSTVERIQQRIIQVDFSAKPAFLAQLLKQ 256
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ + L+F TKH + + + G+ S +G+ Q+ R+ +++FR+ L+
Sbjct: 257 EPVN--RALVFTRTKHGADKVVKALEKAGIPASAIHGNKSQNHRERTLAQFRSGDIRTLV 314
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVT-SEDMAYLLD 380
TD+AARGID+ + +VIN+D P P+ +VHR+GR ARAG GTA S V E++AYL D
Sbjct: 315 ATDIAARGIDVDGITHVINFDLPNVPETYVHRIGRTARAGAEGTAISLVAGGEELAYLRD 374
Query: 381 LHLFL 385
+ +
Sbjct: 375 IERLI 379
>gi|148237396|ref|NP_001085167.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 [Xenopus laevis]
gi|47938654|gb|AAH72214.1| MGC81303 protein [Xenopus laevis]
Length = 448
Score = 250 bits (638), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 141/381 (37%), Positives = 230/381 (60%), Gaps = 8/381 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L ++ + A ++ G+K PT IQ + +P+ L G D++ +A TGSGKT AF +P+LQ
Sbjct: 21 FRDLGVTDVLCEACEQLGWKQPTKIQIEAIPMALQGRDIIGLAETGSGKTGAFALPILQT 80
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L + PQ + AL+L+PTR+LA Q + + LG ++ +++VGG M SQ LA+ P
Sbjct: 81 LLES-PQR-LYALVLTPTRELAFQISEQFEALGSSIGVKSAVIVGGIDMMSQSLALAKKP 138
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
I+IATPGRL+ HL + +L++++Y+V DEAD + M F ++ KIL + +R+T L
Sbjct: 139 HIVIATPGRLIDHLENTKGFNLRAIKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFL 198
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFT--LRQEEKHAALLYMIREH 262
FSAT+ + + +A L+DP V+ V +K KL F + + K + L+Y++ E
Sbjct: 199 FSATMTKKVHKLQRAALKDP--VKCAVSSKYQTVEKLQQFYVFIPSKFKDSYLVYILNE- 255
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
+ +IF ST ++ + + +L R G +G M Q+ R +++F+A+ L+
Sbjct: 256 -LAGNSFMIFCSTCNNTQRVALLLRNLGFTAIPLHGQMGQNKRLGALNKFKAKSRSILLA 314
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
TDVA+RG+DIP +D VIN+D P K ++HRVGR ARAGR+G A +FV+ D+ +
Sbjct: 315 TDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSGKAITFVSQYDVELFQRIE 374
Query: 383 LFLSKPIRAAPSEEEVLLDMD 403
+ K + A P++EE ++ ++
Sbjct: 375 HLIGKKLPAFPTQEEEVMMLN 395
>gi|449297073|gb|EMC93092.1| hypothetical protein BAUCODRAFT_77654 [Baudoinia compniacensis UAMH
10762]
Length = 496
Score = 250 bits (638), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 143/354 (40%), Positives = 208/354 (58%), Gaps = 9/354 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L ++ ++ A G+K PT IQR+ +PL LSG D++ +A TGSGKTAAF +P+LQ
Sbjct: 60 FADLGVNESLCDACTSLGFKTPTAIQREAIPLALSGRDIIGLAETGSGKTAAFALPILQA 119
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L H PQ L+L+PTR+LA Q + + LG +R +++VGG M Q LA+ P
Sbjct: 120 L-LHDPQP-FFGLVLAPTRELAYQISQQFEALGSLIRVRCAVIVGGMDMVPQAIALAKKP 177
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
I++ATPGRL+ HL + SL+S++Y++ DEAD L + F L KIL L R+T L
Sbjct: 178 HIVVATPGRLLDHLENTKGFSLRSLKYLIMDEADRLLDLDFGPILDKILQVLPRERRTAL 237
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDT---KISPDLKLAFFTLRQEEKHAALLYMIRE 261
FSAT+ + L +A LR+P VR+ + T + +L + + + K L++++ E
Sbjct: 238 FSATMNTKLDNLTRAALRNP--VRVSISTSSYQTVANLLQQYIFIPHKHKDVYLIHLLTE 295
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
S Q ++F T + L L R +G + Q AR +++FR+ L+
Sbjct: 296 F--SGQTCILFTRTVTETQRLAFLLRALNFSAIPLHGQLPQSARLGALNKFRSGSRSILV 353
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDM 375
TDVAARG+DIP +D VIN+D PP K +VHRVGR ARAG++G A S VT D+
Sbjct: 354 ATDVAARGLDIPSVDLVINFDLPPDSKTYVHRVGRTARAGKSGVAVSVVTQYDV 407
>gi|409200626|ref|ZP_11228829.1| ATP-dependent RNA helicase [Pseudoalteromonas flavipulchra JG1]
Length = 427
Score = 250 bits (638), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 133/365 (36%), Positives = 218/365 (59%), Gaps = 3/365 (0%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F S + + + A++ + TPIQ+ +P + G+DV+A A+TG+GKTAAF +P++Q+
Sbjct: 4 FSSFSFAQPLLDALQDINFHTLTPIQQAAIPAVRQGSDVLATAQTGTGKTAAFALPIIQK 63
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L + Q RALIL+PTR+LA Q +YTDL++ L GG + Q E L Q
Sbjct: 64 LLEAEAQSTPRALILAPTRELAEQIANNCATFAKYTDLKVQALFGGVNANGQAERLKQGV 123
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
DI++ATPGRL+ H+ + +++L +V+++V DEAD + MGF + KI+ + + +Q LL
Sbjct: 124 DILVATPGRLLDHI-RLGNVTLSNVKHLVLDEADRMLDMGFITDMQKIIELVDKQKQLLL 182
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT PSA+ +FAK L P L++ + + ++ + +++E K L +I
Sbjct: 183 FSATFPSAMKQFAKQVLEHPKLIQATPENSTADTVRHVVYPVKEERKRELLSELI--GTK 240
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
+ QQ L+FV+ K + L + +G++ +VC+GD Q AR+ + F K ++ T+
Sbjct: 241 NWQQVLVFVNMKETADKLVEELKLDGIDANVCHGDKTQGARRRALREFTEGKVRVMVATE 300
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
VAARG+DI L V+N+D P + +VHR+GR RAG+ G A +FV+ E+ + L+ +
Sbjct: 301 VAARGLDIVGLPRVVNYDVPYLAEDYVHRIGRTGRAGQFGYAITFVSREEESDLIHIEQL 360
Query: 385 LSKPI 389
+ + I
Sbjct: 361 IEQQI 365
>gi|330818246|ref|YP_004361951.1| DEAD/DEAH box helicase [Burkholderia gladioli BSR3]
gi|327370639|gb|AEA61995.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
gladioli BSR3]
Length = 505
Score = 250 bits (638), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 136/370 (36%), Positives = 211/370 (57%), Gaps = 8/370 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F SL L+ + RA+ GY PTPIQ + +P +L G D++A A+TG+GKTA F +P+LQR
Sbjct: 3 FASLGLAEPLVRAVNELGYTEPTPIQTQAIPAVLGGGDLLAGAQTGTGKTAGFTLPILQR 62
Query: 85 LNQHVP-QGG----VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139
LN Q G VRALIL+PTR+LA Q + + G+Y LR +++ GG S+ Q +
Sbjct: 63 LNASTAAQAGGKRAVRALILTPTRELAAQVEESVRAYGKYLKLRSTVMFGGVSINPQIDA 122
Query: 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSEN 199
L + DI++ATPGRL+ H+ + + + + ++ +V DEAD + MGF + ++L +L
Sbjct: 123 LKRGVDIVVATPGRLLDHMQQ-KTIDVSQLDILVLDEADRMLDMGFIHDIKRVLARLPAK 181
Query: 200 RQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI 259
RQ LLFSAT + A + L P L+ + + + + + ++ K L ++I
Sbjct: 182 RQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAETIAQKIYPVDRDRKRELLTHLI 241
Query: 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319
REH + Q L+F TKH L ++G+ +G+ Q AR ++ F+A
Sbjct: 242 REH--NWFQVLVFTRTKHGANRLAEQLGKDGISALAIHGNKSQSARTRALTEFKAGTLQV 299
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLL 379
L+ TD+AARGIDI L +V+N++ P P+ +VHR+GR RAG G A S V ++ L
Sbjct: 300 LVATDIAARGIDIDQLPHVVNYELPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLR 359
Query: 380 DLHLFLSKPI 389
D+ + + I
Sbjct: 360 DIEKLIKREI 369
>gi|212690559|ref|ZP_03298687.1| hypothetical protein BACDOR_00044 [Bacteroides dorei DSM 17855]
gi|212666908|gb|EEB27480.1| DEAD/DEAH box helicase [Bacteroides dorei DSM 17855]
Length = 434
Score = 250 bits (638), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 135/359 (37%), Positives = 216/359 (60%), Gaps = 5/359 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L+L + +A+++ GY PTPIQ + +P++L G D++ A+TG+GKTAAF +P++QR
Sbjct: 3 FKELDLIEPILKALQQTGYTTPTPIQEQAIPVLLKGKDLLGCAQTGTGKTAAFAIPLIQR 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L Q + G++ALIL+PTR+LA+Q + + +YT ++ +++ GG ++Q + L +
Sbjct: 63 LYQSDHKKGIKALILTPTRELAIQIGENFDQYAKYTGVKHAVIFGGVPQKAQVDALKRGV 122
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
++IATPGRL+ L +SLK +EY V DEAD + MGF + K+L + RQTL
Sbjct: 123 QVLIATPGRLL-DLQSQGCISLKGLEYFVLDEADRMLDMGFIHDIKKVLKLIPARRQTLF 181
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLD-VDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
FSAT+PS + + A + L +P V + V + + + +F ++E+K L + I
Sbjct: 182 FSATMPSEIEKLADSMLTNPKKVEVTPVSSTVDTIQQSVYFVEKKEKKDLLLHLLKNPEI 241
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
S LIF TKH + L + + + +G+ Q+AR+ ++ F+ T LI T
Sbjct: 242 ES---VLIFTRTKHGADKLAKILNKSEIGAEAIHGNKSQNARQRALTNFKDHTTRVLIAT 298
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
D+AARGID+ L +VIN++ P + +VHR+GR RAG G A SF SE++ YL D+
Sbjct: 299 DIAARGIDVNQLSHVINYELPNISETYVHRIGRTGRAGHDGIAISFCESEELPYLKDIQ 357
>gi|67517117|ref|XP_658442.1| hypothetical protein AN0838.2 [Aspergillus nidulans FGSC A4]
gi|40746512|gb|EAA65668.1| hypothetical protein AN0838.2 [Aspergillus nidulans FGSC A4]
Length = 1676
Score = 250 bits (638), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 145/374 (38%), Positives = 217/374 (58%), Gaps = 14/374 (3%)
Query: 9 ELKRREKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMAR 68
E K E S F+ NLS + R + + PTPIQ+KT+P+ L G D+V A
Sbjct: 776 EEKTDEDAATNSAKRSFQEFNLSRPILRGLAAVNFTNPTPIQQKTIPVALLGKDIVGSAV 835
Query: 69 TGSGKTAAFLVPMLQRL---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRIS 125
TGSGKTAAF+VP+L+RL + VP R IL PTR+LA+Q +L YTD+
Sbjct: 836 TGSGKTAAFVVPILERLLFRPRKVPTS--RVAILMPTRELAVQCYNVATKLATYTDITFC 893
Query: 126 LLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGF 185
LVGG S+ Q L + PD+IIATPGR + H+ ++ ++E +V DEAD + GF
Sbjct: 894 QLVGGFSLREQENVLKKRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGF 953
Query: 186 AEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLA--F 243
A++L++IL + ++RQT+LFSAT+ ++ + + GL P VRL VDTK + + L F
Sbjct: 954 ADELNEILTTIPKSRQTMLFSATMTDSVDKLIRVGLNRP--VRLMVDTKKNTAVTLVQEF 1011
Query: 244 FTL---RQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDM 300
L R++++ LL++ +E + + ++F K + ++F GL+ + +G M
Sbjct: 1012 VRLRPGREDKRLGYLLHLCKEVYTG--RVIVFFRQKKEAHRVRIVFGLLGLKAAELHGSM 1069
Query: 301 DQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARA 360
Q+ R V FR FL+ TD+A+RG+DI ++ VIN++ P +I+VHRVGR ARA
Sbjct: 1070 SQEQRIKSVESFRDGNVNFLLATDLASRGLDIKGVETVINYEAPQSHEIYVHRVGRTARA 1129
Query: 361 GRTGTAFSFVTSED 374
GR+G A + D
Sbjct: 1130 GRSGRACTIAAEPD 1143
>gi|410672237|ref|YP_006924608.1| DEAD/DEAH box helicase domain-containing protein [Methanolobus
psychrophilus R15]
gi|409171365|gb|AFV25240.1| DEAD/DEAH box helicase domain-containing protein [Methanolobus
psychrophilus R15]
Length = 431
Score = 250 bits (638), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 140/355 (39%), Positives = 211/355 (59%), Gaps = 5/355 (1%)
Query: 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVP 80
+S F LNLS ++ AIK GY+ PTPIQ + +PLI+ G DV+ A+TG+GKTAAF +P
Sbjct: 2 ESITFSQLNLSQSIINAIKDIGYEEPTPIQAQAIPLIMEGKDVIGQAQTGTGKTAAFGIP 61
Query: 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
L+ ++ V+ L+L PTR+LA Q +L Y LRI + GG S++ Q + L
Sbjct: 62 ALELVDPEF--NDVQVLVLCPTRELANQVADELTKLSAYQKLRILPIYGGQSLDRQIKAL 119
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
+ III TPGR+M H+ E + ++L++V VV DEAD + MGF E + IL ++ ++R
Sbjct: 120 RRGVHIIIGTPGRVMDHI-ERKTLNLENVAMVVLDEADEMLDMGFREDIELILTKVPDDR 178
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QT+LFSAT+P+ + + K RDP LV+ P+++ ++F ++ K L +I
Sbjct: 179 QTILFSATMPALIMKLTKRFQRDPQLVKTIHKKVTVPNVEQSYFEVKFHTKPEVLCRLI- 237
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
I + +L+F +TK V+ L + G +GDM Q R+ ++ FR L
Sbjct: 238 -DIYDVKSSLVFCNTKRAVDELVDTLKTRGYLADGLHGDMKQQQRERVMASFRKGDIETL 296
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDM 375
+ TDVAARGID+ ++ V N+D P + +VHR+GR RAGR G AF+FVT ++
Sbjct: 297 VATDVAARGIDVENIEVVFNFDLPQDEESYVHRIGRTGRAGRQGRAFTFVTGREL 351
>gi|225561576|gb|EEH09856.1| ATP-dependent RNA helicase DRS1 [Ajellomyces capsulatus G186AR]
Length = 829
Score = 250 bits (638), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 137/355 (38%), Positives = 210/355 (59%), Gaps = 8/355 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F++ +LS + R + G+ PTPIQRKT+P+ L G DVV A TGSGKT AF++P+L+R
Sbjct: 307 FQAFSLSRPILRGLTSVGFTTPTPIQRKTIPVALLGKDVVGGAVTGSGKTGAFIIPILER 366
Query: 85 L---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L + VP R IL PTR+LA+Q +L +TD+ LVGG S+ Q L
Sbjct: 367 LLYRPRKVPTS--RVAILMPTRELAVQCYNVATKLATFTDITFCQLVGGFSLREQENILK 424
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ PD+IIATPGR + H+ ++ ++E +V DEAD + GF ++L++IL + ++RQ
Sbjct: 425 KRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFTDELNEILTTIPKSRQ 484
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR--QEEKHAALLYMI 259
T+LFSAT+ + + + + GL P + +D + L F LR +EEK L ++
Sbjct: 485 TMLFSATMTNNVDKLIRVGLNRPVRLMVDAKKQTVGTLIQEFVRLRPGREEKRLGYLIVL 544
Query: 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319
++I D + ++F +K + ++F GL+ + +G M Q+ R V FR K F
Sbjct: 545 CKNIYKD-RVIVFFRSKKEAHRVRIIFGLLGLKVTELHGSMSQEQRIKSVESFRDGKVSF 603
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
L+ TDVA+RG+DI ++ VIN++ P +I++HRVGR ARAGR+G A + D
Sbjct: 604 LLATDVASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPD 658
>gi|224826248|ref|ZP_03699350.1| DEAD/DEAH box helicase domain protein [Pseudogulbenkiania
ferrooxidans 2002]
gi|224601349|gb|EEG07530.1| DEAD/DEAH box helicase domain protein [Pseudogulbenkiania
ferrooxidans 2002]
Length = 456
Score = 250 bits (638), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 139/356 (39%), Positives = 206/356 (57%), Gaps = 9/356 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L LSP + RAI +GY PTPIQ K +PL+LSG D++A A+TG+GKTAAF++P+L+R
Sbjct: 3 FAELGLSPEILRAIDEQGYSEPTPIQAKAIPLVLSGRDLLAAAQTGTGKTAAFMLPILER 62
Query: 85 LNQHVPQGG------VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138
L + VRALILSPTR+LA Q +Y LR +++ GG +M+ Q +
Sbjct: 63 LKKFASTSASPAMHPVRALILSPTRELADQIAVNAAAYTKYLPLRSTVVFGGMNMDPQTQ 122
Query: 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198
EL + +I+IATPGRL+ H+ + + + L V+ +V DEAD + MGF + KILG L
Sbjct: 123 ELRRGVEILIATPGRLLDHVGQ-KTVQLNKVDVLVLDEADRMLDMGFINDIRKILGMLPR 181
Query: 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258
RQTLLFSAT + A+ + DP V + + ++ F++ + K L ++
Sbjct: 182 TRQTLLFSATFAPEIKRLAEEFMHDPQTVEVARQNSTNAQVEQLVFSVDSQRKRYLLSHL 241
Query: 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
IRE Q ++F TK + L + +G +GD Q AR ++ F+ +
Sbjct: 242 IRERQMG--QVIVFCKTKLSADQLARDLKRDGHAAEAIHGDKAQGARLETLTAFKNGEVK 299
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
L+ TDVAARG+DI L V+N++ P P+ +VHR+GR RAG +G A S + ++
Sbjct: 300 VLVATDVAARGLDISELPYVVNFELPNAPEDYVHRIGRTGRAGASGVAISLMGQDE 355
>gi|337745879|ref|YP_004640041.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus KNP414]
gi|379719836|ref|YP_005311967.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus 3016]
gi|386722433|ref|YP_006188759.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus K02]
gi|336297068|gb|AEI40171.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
mucilaginosus KNP414]
gi|378568508|gb|AFC28818.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
mucilaginosus 3016]
gi|384089558|gb|AFH60994.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus K02]
Length = 537
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 134/370 (36%), Positives = 214/370 (57%), Gaps = 10/370 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L P V RAI G++ TPIQ K +P+ L G D++ A+TG+GKTAAF +P++ +
Sbjct: 4 FSEFGLEPKVLRAITEMGFEESTPIQEKAIPVALEGRDLIGQAQTGTGKTAAFGIPLVNK 63
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
++ V + + ALI+ PTR+LA+Q + ++LGR+ +R + GG + Q L + P
Sbjct: 64 ID--VKEEKIVALIMCPTRELAIQVAEEIEKLGRFKGIRSLPIYGGQDIVKQIRGLRKKP 121
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
III TPGRL+ H++ + + L V+ V+ DEAD + MGF + + IL + E R T+L
Sbjct: 122 QIIIGTPGRLLDHINR-KTIKLDDVQTVILDEADEMLDMGFMDDIKSILSLVPEERNTML 180
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+P + + A+ L+DP V + +P + A+ L + +K AL +I +
Sbjct: 181 FSATMPVNIQKLAQQFLKDPEHVSVIPKQVSAPLIDQAYIELHERQKFEALCRLI--DME 238
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
+ + +IF TK V+ L+ ++ G +GD+ Q+ R + +FR L+ TD
Sbjct: 239 APELAIIFGRTKRRVDELSEALQKRGYAAEGLHGDLSQNQRDNVMRKFRDGSIDVLVATD 298
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL-----L 379
VAARG+D+ + +VIN+D P P+ +VHR+GR RAG+ G A++FVT ++ +L +
Sbjct: 299 VAARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGAAYTFVTPREIDHLHFIEKI 358
Query: 380 DLHLFLSKPI 389
H KPI
Sbjct: 359 TRHRITKKPI 368
>gi|396488909|ref|XP_003842973.1| similar to ATP-dependent RNA helicase DRS1 [Leptosphaeria maculans
JN3]
gi|312219551|emb|CBX99494.1| similar to ATP-dependent RNA helicase DRS1 [Leptosphaeria maculans
JN3]
Length = 811
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 142/359 (39%), Positives = 207/359 (57%), Gaps = 12/359 (3%)
Query: 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPML 82
G F++++LS + R + G+ PTPIQ K +P+ + G DVV A TGSGKTAAFL+P+L
Sbjct: 280 GSFQAMSLSRPILRGLAAVGFSEPTPIQNKAIPIAMQGKDVVGGAETGSGKTAAFLIPIL 339
Query: 83 QRL---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139
+RL + VP R I PTR+LA+Q +L +TD+ +L+ GG S + Q
Sbjct: 340 ERLLYRPKKVPT--TRVAIFMPTRELAVQCFNVATKLASFTDITFALMAGGFSTKDQEAV 397
Query: 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSEN 199
L PD++IATPGR + H+ ++ +E +V DEAD + GF QL++IL + ++
Sbjct: 398 LKTRPDVVIATPGRFIDHMHNTAAFQVEHLEILVLDEADRMLEEGFESQLNEILTTIPKS 457
Query: 200 RQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTK--ISPDLKLAFFTLRQ--EEKHAAL 255
RQT+LFSAT+ S + + G+ P VRL VD K L F LRQ E++ A
Sbjct: 458 RQTMLFSATMTSTVDRLIRIGMDKP--VRLMVDAKKHTVKGLTQEFIRLRQGKEDRRLAY 515
Query: 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRAR 315
L I E + ++ +IF K + V+F GL+ S +G+M Q+ R V FR+
Sbjct: 516 LMYICEKFYN-ERVIIFFRQKKEAHRVRVVFALCGLKASELHGNMSQEQRIQAVEAFRSG 574
Query: 316 KTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
K+ +L+ TDVA+RG+DI + VIN++ P I++HRVGR ARAGR G A + D
Sbjct: 575 KSAYLLATDVASRGLDIKNVSTVINYEAPQTHDIYMHRVGRTARAGREGRACTLAAEPD 633
>gi|403282331|ref|XP_003932605.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Saimiri
boliviensis boliviensis]
Length = 765
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 139/392 (35%), Positives = 224/392 (57%), Gaps = 4/392 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ +NLS + +AI G+K PTPIQ+ +P+ L G D+ A A TG+GKTAAF +P+L+R
Sbjct: 189 FQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLER 248
Query: 85 LNQHVPQGGV-RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L Q V R L+L PTR+L +Q T++L ++ ++ L VGG ++SQ L
Sbjct: 249 LIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDLKSQEAALRAA 308
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
PDI+IATPGRL+ HL L S+E ++ DEAD + F EQ+ +I+ S +RQT+
Sbjct: 309 PDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTM 368
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR--QEEKHAALLYMIRE 261
LFSAT+ + + A L++P + ++ +T ++P L+ F +R +E A++ +
Sbjct: 369 LFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLT 428
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+D ++F TK +++L GL+ +G++ Q R + RF+ + L+
Sbjct: 429 RTFTD-HVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILV 487
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TDVAARG+DI + VIN+ P K +VHRVGR ARAGR G + S V ++ L ++
Sbjct: 488 ATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEI 547
Query: 382 HLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAI 413
P++A ++V+L + K+++ +
Sbjct: 548 VKAAKAPVKARILPQDVVLKFRDKIEKMEKDV 579
>gi|397905196|ref|ZP_10506067.1| Cold-shock DEAD-box protein A [Caloramator australicus RC3]
gi|397161845|emb|CCJ33401.1| Cold-shock DEAD-box protein A [Caloramator australicus RC3]
Length = 526
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 135/367 (36%), Positives = 220/367 (59%), Gaps = 6/367 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE LNLS + +AI+ GY+ TPIQ KT+P+IL G D++ A+TG+GKTAAF +P L+R
Sbjct: 6 FEELNLSKEILKAIEELGYEEATPIQAKTIPIILQGKDIIGQAQTGTGKTAAFGIPTLER 65
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD-LRISLLVGGDSMESQFEELAQN 143
++ + ++ALIL PTR+LA+Q + K+L +Y + I + GG S+E Q + L +
Sbjct: 66 IDPS--KKTIQALILCPTRELAIQVSEELKKLSKYKKAIGILPIYGGQSIERQIQSLKKG 123
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
+III TPGR + H+ E + L+ ++ + DEAD + MGF E + IL + +++QTL
Sbjct: 124 VNIIIGTPGRCIDHI-ERGTLKLEDIKLFILDEADEMLNMGFIEDIEFILDKTPKDKQTL 182
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
LFSAT+P + + K L++P +++ P ++ +F +++ K L ++ I
Sbjct: 183 LFSATMPDPILKLTKKYLKNPEHIKVVHKELTVPTIEQIYFEVKEAHKIEILSRLL--DI 240
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+ + L+F +TK V+ + + G +GDM Q+ R +++FR+ L+ T
Sbjct: 241 YNPKLALVFCNTKKKVDEVVSSLQARGYLADALHGDMKQNQRDRVMAKFRSGTIDVLVAT 300
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHL 383
DVAARGID+ ++ V N+D P + +VHR+GR RAGR G AF+FV+ +D+ L D+
Sbjct: 301 DVAARGIDVEDVEIVFNYDVPQDEEYYVHRIGRTGRAGREGKAFTFVSGKDIYKLRDIQR 360
Query: 384 FLSKPIR 390
+ I+
Sbjct: 361 YTKTKIK 367
>gi|121700981|ref|XP_001268755.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus clavatus
NRRL 1]
gi|142982514|sp|A1CNV8.1|DRS1_ASPCL RecName: Full=ATP-dependent RNA helicase drs1
gi|119396898|gb|EAW07329.1| ATP-dependent RNA helicase (Drs1), putative [Aspergillus clavatus
NRRL 1]
Length = 826
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 140/358 (39%), Positives = 212/358 (59%), Gaps = 14/358 (3%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ NLS + R + + PTPIQ+KT+P+ L G D+V A TGSGKTAAF+VP+L+R
Sbjct: 308 FQDFNLSRPILRGLASVNFTTPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPILER 367
Query: 85 L---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L + VP R IL PTR+LA+Q +L +TD+ LVGG S+ Q L
Sbjct: 368 LLFRPRKVPTS--RVAILMPTRELAVQCYNVATKLATHTDVTFCQLVGGFSLREQENILK 425
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ PD+IIATPGR + H+ ++ ++E +V DEAD + GFA++L++IL + ++RQ
Sbjct: 426 KRPDVIIATPGRFIDHMRNSPSFTVDTLEILVLDEADRMLEDGFADELNEILTTIPKSRQ 485
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLA--FFTL---RQEEKHAALL 256
T+LFSAT+ ++ + + GL P VRL VD+K + + L F L R+ ++ LL
Sbjct: 486 TMLFSATMTDSVDKLIRVGLNRP--VRLMVDSKKNTSMNLTQEFVRLRPGREGKRLGYLL 543
Query: 257 YMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK 316
Y+ E + + ++F K + ++F GL+ + +G M Q+ R V FR K
Sbjct: 544 YLCSEIFTG--RVIVFFRQKKEAHRVRIVFGLLGLKAAELHGSMSQEQRIKSVESFREGK 601
Query: 317 TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
FL+ TD+A+RG+DI ++ VIN++ P +I++HRVGR ARAGR+G A + D
Sbjct: 602 VAFLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAADPD 659
>gi|400599006|gb|EJP66710.1| DEAD/DEAH box helicase [Beauveria bassiana ARSEF 2860]
Length = 768
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 139/365 (38%), Positives = 210/365 (57%), Gaps = 8/365 (2%)
Query: 15 KQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKT 74
K K + F++++LS + R + G+ PTPIQ KT+P+ L G D+V A TGSGKT
Sbjct: 240 KGGKDERVSSFQAMSLSRPILRGLTNVGFTKPTPIQAKTIPIALMGKDLVGGAVTGSGKT 299
Query: 75 AAFLVPMLQRL---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGD 131
AF++P+L+RL + VP R ++L+PTR+LA+Q +L +TD++ +L VGG
Sbjct: 300 GAFIIPILERLLYRPKKVPT--TRVVVLTPTRELAIQCHAVATKLAAHTDIKFTLAVGGL 357
Query: 132 SMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHK 191
S++ Q EL PD+IIATPGR + H+ + +VE +V DEAD + GFA++L++
Sbjct: 358 SLKVQEAELRLRPDVIIATPGRFIDHMRNSASFPIDTVEILVLDEADRMLEDGFADELNE 417
Query: 192 ILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR--QE 249
IL L ++RQT+LFSAT+ S + + G+ P V +D + L F LR +E
Sbjct: 418 ILTTLPKSRQTMLFSATMTSTVDRLIRVGMNKPARVMVDSQKRTVGTLVQEFVRLRPGRE 477
Query: 250 EKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHV 309
K L I + + + ++ +IF K ++F G+ + +G M Q R V
Sbjct: 478 NKRMGYLAHICKTLYT-ERVIIFFRQKKDAHEARIIFGILGMTCAELHGSMSQTGRIESV 536
Query: 310 SRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSF 369
FR K +L+ TD+A+RG+DI +D VIN++ P +I+VHRVGR ARAGR G A +
Sbjct: 537 EAFRDGKVNYLLATDLASRGLDIKGVDTVINYEAPQSLEIYVHRVGRTARAGRKGVALTL 596
Query: 370 VTSED 374
D
Sbjct: 597 AAESD 601
>gi|315123425|ref|YP_004065431.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
gi|359438791|ref|ZP_09228788.1| ATP-dependent RNA helicase rhlE [Pseudoalteromonas sp. BSi20311]
gi|359443935|ref|ZP_09233747.1| ATP-dependent RNA helicase rhlE [Pseudoalteromonas sp. BSi20439]
gi|315017185|gb|ADT70522.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
gi|358026522|dbj|GAA65037.1| ATP-dependent RNA helicase rhlE [Pseudoalteromonas sp. BSi20311]
gi|358042240|dbj|GAA69996.1| ATP-dependent RNA helicase rhlE [Pseudoalteromonas sp. BSi20439]
Length = 433
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 139/388 (35%), Positives = 218/388 (56%), Gaps = 11/388 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+S + +P + +A+ Y TPIQR +P + G DV+A A+TG+GKTAAF +P++Q+
Sbjct: 3 FKSFSFAPELIQALDELNYHTLTPIQRAAIPAVRKGKDVLASAQTGTGKTAAFALPIIQK 62
Query: 85 L--NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
L + AL+L+PTR+LA Q K+ +YT L++ L GG + Q L +
Sbjct: 63 LFESDSSTTNAPSALVLAPTRELAEQIANNFKDFAKYTSLKVVSLFGGVNTAGQEIALKE 122
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
DI++ATPGRL+ H+ + ++SL V+++V DEAD + MGF + ++ ++ RQ
Sbjct: 123 GVDIVVATPGRLLDHI-RLGNLSLAQVKHLVLDEADRMLDMGFINDMQSVIKSCADERQI 181
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
LLFSAT P+A+ +FA L+ P +VR+D + ++ + + + K L +I +
Sbjct: 182 LLFSATFPAAIKQFASKVLKQPEIVRVDQTNSTASTVQHVVYPVEERRKQELLSELIGKK 241
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
+ QQ L+FV+ K + L +G+ +VC+GD Q R+ + F+ K L+
Sbjct: 242 --NWQQVLVFVNMKETADELVTELNLDGIPAAVCHGDKSQGNRRRALREFKEGKVRVLVA 299
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
T+VAARGIDI L VIN D P + +VHR+GR RAG G A SFV+ E+ L ++
Sbjct: 300 TEVAARGIDIDGLPRVINIDLPWLAEDYVHRIGRTGRAGNQGQAISFVSREEENMLFEIE 359
Query: 383 LFLSKPIRAA------PSEEEVLLDMDG 404
+ + I+ S EVL+D G
Sbjct: 360 TLIGQKIKRVYLEGYEVSNREVLIDKIG 387
>gi|56477991|ref|YP_159580.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
gi|56314034|emb|CAI08679.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
Length = 491
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 137/363 (37%), Positives = 206/363 (56%), Gaps = 9/363 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L L P + RA+ GY PTPIQ++ +P++LSG DV+ A+TG+GKTA F +P+LQR
Sbjct: 3 FADLGLIPELLRAVAESGYTTPTPIQQQAIPVVLSGRDVMGGAQTGTGKTAGFTLPLLQR 62
Query: 85 LNQHVPQGG------VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138
L +H VRALIL+PTR+LA+Q + K +Y LR + + GG M+ Q +
Sbjct: 63 LARHASTSTSPARHPVRALILAPTRELAMQVFESVKTYSKYVPLRSTCIYGGVDMKPQIQ 122
Query: 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198
+L +I++ATPGRL+ H+ + + + L VE +V DEAD + MGF + +IL L
Sbjct: 123 DLRNGIEIVVATPGRLLDHVQQ-KTIQLGQVEMLVLDEADRMLDMGFIPDIRRILDLLPA 181
Query: 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258
RQ+LLFSAT + + A L++P L+ + +S + + K L ++
Sbjct: 182 ARQSLLFSATFSDEIKKLADQMLKEPQLIEVARRNMVSETITHRVHPVSAGLKRNLLAHL 241
Query: 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
+R D Q L+FV+TK L G+ +GD Q R + F++ K
Sbjct: 242 LRHE--PDTQALVFVATKLACSRLAHFLERHGIAADAIHGDKGQAQRTDTLEAFKSGKLR 299
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
L+ TDVAARG+DI L +VIN++ P + +VHR+GR RAGR G A S V++E+ +L
Sbjct: 300 VLVATDVAARGLDIDDLPSVINFELPHTAEDYVHRIGRTGRAGRQGNAVSLVSAEERHHL 359
Query: 379 LDL 381
++
Sbjct: 360 AEI 362
>gi|19114126|ref|NP_593214.1| ATP-dependent RNA helicase Ddx27/Drs1 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|1351656|sp|Q09903.1|DRS1_SCHPO RecName: Full=ATP-dependent RNA helicase drs1
gi|1065890|emb|CAA91889.1| ATP-dependent RNA helicase Ddx27/Drs1 (predicted)
[Schizosaccharomyces pombe]
Length = 754
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 138/372 (37%), Positives = 220/372 (59%), Gaps = 10/372 (2%)
Query: 13 REKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSG 72
+EK + F+S+NLS + + + G++VPT IQ KT+PL L G D+V A TGSG
Sbjct: 249 KEKSMMTTTHSSFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSG 308
Query: 73 KTAAFLVPMLQRL---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVG 129
KTAAF+VP+L+RL + VP R LIL PTR+LA+Q ++ +TD+ + L +G
Sbjct: 309 KTAAFIVPILERLLYRPKKVPT--TRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIG 366
Query: 130 GDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQL 189
G S++ Q +EL + PDI+IATPGR + H+ + +++++E +V DEAD + GFA++L
Sbjct: 367 GLSLKLQEQELRKRPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADEL 426
Query: 190 HKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQE 249
++I+ ++RQT+LFSAT+ + + + L P V +D + L F +R +
Sbjct: 427 NEIIQACPKSRQTMLFSATMTDKVDDLIRLSLNRPVRVFVDNKKTTAKLLTQEFVRVRPQ 486
Query: 250 E---KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARK 306
+ A L+Y+ +E ++T+IF +K + V+F L + +G + Q+ R
Sbjct: 487 RELLRPAMLIYLCKELFH--RRTIIFFRSKAFAHKMRVIFGLLSLNATEIHGSLSQEQRV 544
Query: 307 IHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTA 366
+ FR K +L+ TDVA+RGIDI ++ VIN++ P ++++HRVGR ARAGR+G A
Sbjct: 545 RALEDFRDGKCNYLLATDVASRGIDIKGIEVVINYEAPATHEVYLHRVGRTARAGRSGRA 604
Query: 367 FSFVTSEDMAYL 378
+ D L
Sbjct: 605 ITLAGEGDRKVL 616
>gi|187778617|ref|ZP_02995090.1| hypothetical protein CLOSPO_02212 [Clostridium sporogenes ATCC
15579]
gi|387819068|ref|YP_005679415.1| cold-shock DEAD-box protein A [Clostridium botulinum H04402 065]
gi|187772242|gb|EDU36044.1| DEAD/DEAH box helicase [Clostridium sporogenes ATCC 15579]
gi|322807112|emb|CBZ04686.1| cold-shock DEAD-box protein A [Clostridium botulinum H04402 065]
Length = 524
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 132/382 (34%), Positives = 226/382 (59%), Gaps = 12/382 (3%)
Query: 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQ 83
FE+LNL+ +V +AI+ G++ P+ IQ K++P++L GADV+A A+TG+GKT AF P++
Sbjct: 5 NFENLNLNEDVLKAIQHMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVIS 64
Query: 84 RLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L + GV+AL+L+PTR+LALQ K L +Y+ ++ + GG+S+E Q +++
Sbjct: 65 TLCDEGKKKGVKALVLTPTRELALQIKDELKRLSKYSKTKVLPVYGGESIERQIKDIKSG 124
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
DI++ TPGR++ H++ + L ++++V DEAD + MGF E + I+ E +QT+
Sbjct: 125 VDIVVGTPGRVLDHINR-RTLKLGGIDFLVLDEADEMLNMGFIEDIETIMASTPEEKQTM 183
Query: 204 LFSATLPSALAEFAKAGLRD--PHLVRLDVDTKISPDLKLA--FFTLRQEEKHAALLYMI 259
LFSAT+P+ + + A ++ H+ L + K+A +F ++ ++K A+ +I
Sbjct: 184 LFSATMPAPIKKLALNYMKKDVEHIAILKKSLTVD---KIAQHYFAVKNKDKLEAICRII 240
Query: 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMF 319
+ +IF TK V+ L + +G +GDM Q+ R + +F+ F
Sbjct: 241 DSE--EPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATLNF 298
Query: 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLL 379
L+ TDVAARGID+ + +VIN+D P + +VHR+GR RA + GTA+S VT +++ +
Sbjct: 299 LVATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSSIR 358
Query: 380 DLHLFLSKPI--RAAPSEEEVL 399
+ + I + P+ E++L
Sbjct: 359 QIERIIKSKITKKELPTLEDIL 380
>gi|119596074|gb|EAW75668.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27, isoform CRA_d [Homo
sapiens]
Length = 763
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 139/392 (35%), Positives = 224/392 (57%), Gaps = 4/392 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ +NLS + +AI G+K PTPIQ+ +P+ L G D+ A A TG+GKTAAF +P+L+R
Sbjct: 220 FQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLER 279
Query: 85 LNQHVPQGGV-RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L Q V R L+L PTR+L +Q T++L ++ ++ L VGG ++SQ L
Sbjct: 280 LIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAA 339
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
PDI+IATPGRL+ HL L S+E ++ DEAD + F EQ+ +I+ S +RQT+
Sbjct: 340 PDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTM 399
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR--QEEKHAALLYMIRE 261
LFSAT+ + + A L++P + ++ +T ++P L+ F +R +E A++ +
Sbjct: 400 LFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLT 459
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+D ++F TK +++L GL+ +G++ Q R + RF+ + L+
Sbjct: 460 RTFTD-HVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILV 518
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TDVAARG+DI + VIN+ P K +VHRVGR ARAGR G + S V ++ L ++
Sbjct: 519 ATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEI 578
Query: 382 HLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAI 413
P++A ++V+L + K+++ +
Sbjct: 579 VKAAKAPVKARILPQDVILKFRDKIEKMEKDV 610
>gi|402083740|gb|EJT78758.1| ATP-dependent rRNA helicase RRP3 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 485
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 143/355 (40%), Positives = 208/355 (58%), Gaps = 11/355 (3%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L + + A + GYK PTPIQ + +PL L G DV+ +A TGSGKTAAF +P+LQ
Sbjct: 59 FKDLGIVDPLCEACEALGYKQPTPIQTQAIPLALQGRDVIGIAETGSGKTAAFALPILQS 118
Query: 85 L-NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L ++ P G L+L+PTR+LA Q + + LG LR +++VGG M SQ L +
Sbjct: 119 LLDKPQPLFG---LVLAPTRELAAQIGQAFEALGSLISLRCAVVVGGLDMVSQSIALGKK 175
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
P +++ATPGRL+ HL + + SL+S++Y+V DEAD L + F L KIL L R+T
Sbjct: 176 PHVVVATPGRLLDHLEKTKGFSLRSLKYLVMDEADRLLDLDFGPILDKILKFLPRERRTY 235
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAF---FTLRQEEKHAALLYMIR 260
LFSAT+ S + +A LRDP +R+ V +K + + K L+Y++
Sbjct: 236 LFSATMSSKVESLQRASLRDP--LRVSVSSKREKTVATLLQNPLIIPHMHKDVYLIYLVN 293
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
E + Q T+IF T + + L++L R +G + Q R +++F+A+ L
Sbjct: 294 EF--AGQTTIIFTRTVNEAQRLSILLRTLSFGAIPLHGQLSQSMRLGALNKFKAKSRDIL 351
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDM 375
+ TDVAARG+DIP +D VIN+D P ++HRVGR ARAGR+G A S VT D+
Sbjct: 352 VATDVAARGLDIPEVDLVINYDLPGDSMTYIHRVGRTARAGRSGRAISIVTQYDV 406
>gi|146413022|ref|XP_001482482.1| hypothetical protein PGUG_05502 [Meyerozyma guilliermondii ATCC
6260]
Length = 475
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 141/370 (38%), Positives = 209/370 (56%), Gaps = 4/370 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F LNL P + AI++ Y PTPIQ +P L G D++ +A+TGSGKTAAF +P+LQ
Sbjct: 66 FLELNLVPELMEAIEKLKYTKPTPIQSGAIPHALEGKDIIGLAQTGSGKTAAFAIPILQS 125
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L + Q AL+L+PTR+LA Q + LG +R +VGG M Q +L + P
Sbjct: 126 LWE--AQRPYYALVLAPTRELAYQIKETFDALGSGMGVRSVCIVGGMDMMDQARDLMRKP 183
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
I++ATPGR+M HL + SLKS++Y+V DEAD L M F L KIL + R T L
Sbjct: 184 HILVATPGRIMDHLENTKGFSLKSLQYLVMDEADRLLDMDFGPALDKILKVIPTKRTTYL 243
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHIS 264
FSAT+ + +A+ +A L +P V + + + +L + + K+ L++++ E +
Sbjct: 244 FSATMTNKIAKLQRASLHEPVKVAVSNKYQTADNLVQSMMLVSDGYKNTFLIHLLNEFMG 303
Query: 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324
+ ++F T H + +L R G +G + Q R +++F++ K LI TD
Sbjct: 304 --KSIIVFTRTCAHTQRSTLLARILGFSAVPLHGQLTQSQRLGSLNKFKSGKANILIATD 361
Query: 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384
VAARG+DIP +D VIN+D P K ++HRVGR ARAG++G + S VT D+ L +
Sbjct: 362 VAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGKSGKSISLVTQYDLEMYLRIESV 421
Query: 385 LSKPIRAAPS 394
L + PS
Sbjct: 422 LGFKLPKDPS 431
>gi|449456355|ref|XP_004145915.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 10-like [Cucumis
sativus]
Length = 449
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 140/384 (36%), Positives = 225/384 (58%), Gaps = 9/384 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+SL + + A G+K P+ IQ + +P L G D++ +A+TGSGKT AF +P+LQ
Sbjct: 11 FQSLGICEQLVEACDSLGWKNPSKIQAEAIPHALEGKDLIGLAQTGSGKTGAFALPILQA 70
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L + PQ A +LSPTR+LA+Q + + LG ++ ++LVGG M Q LA+ P
Sbjct: 71 LLE-APQA-FFACVLSPTRELAIQIAEQFEALGSGIGIKCAVLVGGVDMVQQAINLAKRP 128
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
+++ TPGRL+ HL+ + SL++++Y+V DEAD L F + + +IL ++ R+T L
Sbjct: 129 HVVVGTPGRLVDHLTNTKGFSLRTLKYLVLDEADRLLNEDFEKSIDEILNEIPRERRTYL 188
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISP--DLKLAFFTLRQEEKHAALLYMIREH 262
FSAT+ + + +A LR+P V+++ TK S LK + + + K L+Y++ E
Sbjct: 189 FSATMTKKVRKLQRACLRNP--VKIEAATKYSTVDTLKQQYCFIPAKYKECYLVYILTEM 246
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
S +++F T L+++ R GL G M Q R +++F+A + LI
Sbjct: 247 --SGSTSMVFTRTCDATRLLSLILRNLGLRAIPISGQMTQAKRLGALNKFKAGECNILIC 304
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
TDVA+RG+DIP +D VIN+D P K ++HRVGR ARAGR+G A S V ++ + + +
Sbjct: 305 TDVASRGLDIPSVDMVINYDIPSNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIE 364
Query: 383 LFLSKPI-RAAPSEEEVLLDMDGV 405
+ K + + + EEEVL+ ++ V
Sbjct: 365 KLIGKKLPQFSAQEEEVLMLLERV 388
>gi|423302506|ref|ZP_17280528.1| hypothetical protein HMPREF1057_03669 [Bacteroides finegoldii
CL09T03C10]
gi|408470382|gb|EKJ88916.1| hypothetical protein HMPREF1057_03669 [Bacteroides finegoldii
CL09T03C10]
Length = 374
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 131/371 (35%), Positives = 221/371 (59%), Gaps = 6/371 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F LN+ + +AI+ KGY VPT IQ K +P L+ D++ A+TG+GKTA+F +P++Q
Sbjct: 3 FRDLNIIELILKAIEEKGYTVPTSIQEKAIPAALAKRDILGCAQTGTGKTASFAIPIIQH 62
Query: 85 LNQHVP---QGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L + + G++ALIL+PTR+LALQ + + +YT +R ++ GG + Q + L
Sbjct: 63 LQANKETDKRQGIKALILTPTRELALQISECIDDYSKYTHVRHGVIFGGVNQRPQIDMLH 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ DI++ATPGRL+ +++ + L ++EY V DEAD + MGF + +IL +L + +Q
Sbjct: 123 KGIDILVATPGRLLDLMNQ-GYIHLTNIEYFVLDEADRMLDMGFIHDIKRILPKLPKEKQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
TL FSAT+P ++ K+ L++P + + + +K + + ++EK L+ ++++
Sbjct: 182 TLFFSATMPDSIIALTKSLLKNPVKIYITPKSSTVDSIKQIIYFVEKKEKSQLLISILQK 241
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ DQ LIF TKH+ + + + + G+ +G+ Q AR+ + F++ KT ++
Sbjct: 242 --AEDQSVLIFSRTKHNADKIVRILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTKVMV 299
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TD+A+RGIDI L VIN+D P P+ +VHR+GR RAG GTA +F + E+ + D+
Sbjct: 300 ATDIASRGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNEGTALTFCSQEERKLVNDI 359
Query: 382 HLFLSKPIRAA 392
K + A
Sbjct: 360 QKLTGKKLNKA 370
>gi|383758280|ref|YP_005437265.1| ATP-dependent RNA helicase RhlE [Rubrivivax gelatinosus IL144]
gi|381378949|dbj|BAL95766.1| ATP-dependent RNA helicase RhlE [Rubrivivax gelatinosus IL144]
Length = 466
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 137/380 (36%), Positives = 214/380 (56%), Gaps = 11/380 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L L+ + RA++ +GY VPTPIQ + +P +L G D++A A+TG+GKTA F +PMLQR
Sbjct: 3 FTDLGLAEPLLRAVRDQGYDVPTPIQAQAIPAVLQGGDLLAGAQTGTGKTAGFTLPMLQR 62
Query: 85 LNQHVP------QGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138
L+ P + VRAL+L+PTR+LA Q + + G+Y L ++ GG M+ Q +
Sbjct: 63 LSASKPVRDSRGRIAVRALVLTPTRELAAQVEESVRAYGKYLPLTSMVMFGGVGMQPQID 122
Query: 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198
L + DI++ATPGRL+ H + + L +V+ +V DEAD + MGF + K+L L +
Sbjct: 123 RLKKGVDILVATPGRLLDHHGQ-GTLDLSNVQILVLDEADRMLDMGFIHDIKKVLAVLPQ 181
Query: 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258
+Q+LLFSAT + A L P L+ + + + + + +E+K L ++
Sbjct: 182 KKQSLLFSATFSDEIKALADRLLNQPALIEVARRNATADTIAQKVYPVGREKKKELLAHL 241
Query: 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
IR+ Q L+F KH L E+G+ +G+ Q AR ++ F+A
Sbjct: 242 IRQ--GDWHQVLVFTRMKHGANRLAEYLNEQGITAMAIHGNKSQGARTKALAEFKAGTLQ 299
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
L+ TD+AARGIDI L +V+N++ P P+ +VHR+GR RAG +G A S V ++ +L
Sbjct: 300 VLVATDIAARGIDIDQLPHVVNYELPNVPEDYVHRIGRTGRAGASGEAVSLVCLDEEIFL 359
Query: 379 LDLHLFLSK--PIRAAPSEE 396
D+ + + P+ A P E
Sbjct: 360 RDIQRLIKREIPVEAMPGFE 379
>gi|383450999|ref|YP_005357720.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Flavobacterium
indicum GPTSA100-9]
gi|380502621|emb|CCG53663.1| Probable ATP-dependent RNA helicase, DEAD/DEAH box family
[Flavobacterium indicum GPTSA100-9]
Length = 431
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 135/372 (36%), Positives = 212/372 (56%), Gaps = 7/372 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE L L N+ +K + Y PTPIQ++ +P+IL D+V A+TG+GKTAAF +P+L
Sbjct: 3 FEDLKLHRNITEVLKEENYVAPTPIQQQAIPIILEEHDLVGCAQTGTGKTAAFAIPILNY 62
Query: 85 LNQHVPQGG----VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
L+ V +R L+L+PTR+LA Q L GRY + + ++ GG + Q ++
Sbjct: 63 LHPIVGSKNKRKVIRTLVLAPTRELAHQILDSFDTYGRYMNTKAMVIYGGVNQVPQVNKI 122
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
+ DI+IATPGRL+ L + + L + ++V DEAD + MGF + KI+ +NR
Sbjct: 123 KEGVDILIATPGRLLD-LHKQGFIDLNHLHHLVIDEADQMLDMGFINDVKKIIKLTPDNR 181
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSAT+P+A+ E A L+ P V + + + + + +++E+K L+++++
Sbjct: 182 QTLLFSATMPAAIRELADQFLKKPKFVSVTPVSSTAEKVNQKVYMVQKEDKRKLLIHLLQ 241
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
E S+ L+FV TKH + + ++ + +GD Q AR + F+ +K L
Sbjct: 242 EEKISN--VLVFVRTKHSADNVVKALKKNEITAEAIHGDKSQTARLRVLDEFKNKKISVL 299
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLD 380
+ TD+AARGIDI LL VIN+D P P+ +VHR+GR RAG G A SF +++ Y D
Sbjct: 300 VATDIAARGIDIDLLPYVINFDIPNVPETYVHRIGRTGRAGNEGLAISFCGKDEVTYWKD 359
Query: 381 LHLFLSKPIRAA 392
+ + I+
Sbjct: 360 IEKLTRQQIKVV 371
>gi|322696755|gb|EFY88543.1| ATP-dependent rRNA helicase RRP3 [Metarhizium acridum CQMa 102]
Length = 478
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 145/380 (38%), Positives = 218/380 (57%), Gaps = 11/380 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L + ++ A + YK PTPIQ K++P+ L D++ +A TGSGKTAAF +P+LQ
Sbjct: 59 FKQLGIVDSLCEACESLNYKFPTPIQEKSIPVALQNRDIIGLAETGSGKTAAFALPILQA 118
Query: 85 L-NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L ++ P G L+L+PTR+LA Q + + LG LR +++VGG M Q L +
Sbjct: 119 LLDKPQPLFG---LVLAPTRELAHQIGQSFEALGSSISLRCAVIVGGLDMVPQAVALGKK 175
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
P II+ATPGRL+ HL + + SL++++Y+V DEAD L M F + K+L + R+T
Sbjct: 176 PHIIVATPGRLVDHLEKTKGFSLRTLKYLVMDEADRLLDMDFGPAIDKLLKFIPRERRTY 235
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDT---KISPDLKLAFFTLRQEEKHAALLYMIR 260
LFSATL S + +A LRDP VR+ V + + L + Q K L+Y++
Sbjct: 236 LFSATLSSKVESLQRASLRDP--VRVSVSSNKYQTVSTLLQNLLVIPQMRKDTYLIYLVN 293
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
E + + T+IF T + + +L R G +G + Q AR +++FR+ L
Sbjct: 294 EF--TGKSTIIFTRTVWETQRIAILLRTLGFGAIPLHGQLSQSARLGALNKFRSGTRDIL 351
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLD 380
+ TDVAARG+DI +D V+N+D P K ++HRVGR ARAG++G A S VT D+
Sbjct: 352 VATDVAARGLDISKVDVVLNYDLPQDSKTYIHRVGRTARAGKSGIAISLVTQYDIEVFQR 411
Query: 381 LHLFLSKPIRAAPSEEEVLL 400
+ L K + P+E+E +L
Sbjct: 412 IEAALGKKLDIYPTEKEEVL 431
>gi|297707298|ref|XP_002830447.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 isoform 1
[Pongo abelii]
Length = 765
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 139/392 (35%), Positives = 224/392 (57%), Gaps = 4/392 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ +NLS + +AI G+K PTPIQ+ +P+ L G D+ A A TG+GKTAAF +P+L+R
Sbjct: 189 FQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLER 248
Query: 85 LNQHVPQGGV-RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L Q V R L+L PTR+L +Q T++L ++ ++ L VGG ++SQ L
Sbjct: 249 LIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCNITTCLAVGGLDVKSQEAALRAA 308
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
PDI+IATPGRL+ HL L S+E ++ DEAD + F EQ+ +I+ S +RQT+
Sbjct: 309 PDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTM 368
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR--QEEKHAALLYMIRE 261
LFSAT+ + + A L++P + ++ +T ++P L+ F +R +E A++ +
Sbjct: 369 LFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLT 428
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+D ++F TK +++L GL+ +G++ Q R + RF+ + L+
Sbjct: 429 RTFTD-HVMLFTQTKKQAHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILV 487
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TDVAARG+DI + VIN+ P K +VHRVGR ARAGR G + S V ++ L ++
Sbjct: 488 ATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEI 547
Query: 382 HLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAI 413
P++A ++V+L + K+++ +
Sbjct: 548 VKAAKAPVKARILPQDVILKFRDKIEKMEKDV 579
>gi|258563612|ref|XP_002582551.1| ATP-dependent rRNA helicase RRP3 [Uncinocarpus reesii 1704]
gi|237908058|gb|EEP82459.1| ATP-dependent rRNA helicase RRP3 [Uncinocarpus reesii 1704]
Length = 472
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 154/410 (37%), Positives = 228/410 (55%), Gaps = 8/410 (1%)
Query: 6 SKAELKRREKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVA 65
S E++ + Q KS F+ L + ++ A + GYK PT IQ +++PL L G DV+
Sbjct: 31 SPQEVEPSDTQSTTRKS--FKDLGVIDSLCEACESLGYKAPTQIQAESIPLALQGRDVIG 88
Query: 66 MARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRIS 125
+A TGSGKTAAF +P+LQ L PQ + L+L+PTR+LA Q + + LG +R +
Sbjct: 89 LAETGSGKTAAFALPILQALMDK-PQS-MFGLVLAPTRELAYQISEQVEALGSLISVRCA 146
Query: 126 LLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGF 185
++VGG M SQ L + P II+ATPGRL+ HL + SL++++Y+V DEAD L + F
Sbjct: 147 VIVGGMDMVSQAIALGKKPHIIVATPGRLLDHLENTKGFSLRNLKYLVMDEADRLLDLDF 206
Query: 186 AEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVD-TKISPDLKLAFF 244
L KIL L + R+T LFSAT+ S + +A L +P V + + + L +
Sbjct: 207 GPILDKILKVLPKERRTYLFSATMSSKVESLQRASLSNPLRVSISSNKYQTVATLLQNYL 266
Query: 245 TLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDA 304
+ + K +Y++ E Q ++F T + + L +L R G +G + Q A
Sbjct: 267 FIPHKYKDIYFVYLLNEF--PGQSVIVFTRTVNETQRLAILLRALGFGAIPLHGQLSQSA 324
Query: 305 RKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTG 364
R + +FR+R L+ TDVAARG+DIP +D V+N+D P K ++HRVGR ARAG++G
Sbjct: 325 RLGALGKFRSRSRNILVATDVAARGLDIPSVDLVLNYDLPSDSKTYIHRVGRTARAGKSG 384
Query: 365 TAFSFVTSEDMAYLLDLHLFLSKPIRAAPSE-EEVLLDMDGVMSKIDQAI 413
AFS VT D+ + L K +E EEV++ D V AI
Sbjct: 385 HAFSLVTQFDIEIWQRIEGALGKTFDEYKTEKEEVMVLSDRVSEAQRHAI 434
>gi|325982424|ref|YP_004294826.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas sp.
AL212]
gi|325531943|gb|ADZ26664.1| DEAD/DEAH box helicase domain protein [Nitrosomonas sp. AL212]
Length = 476
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 135/365 (36%), Positives = 209/365 (57%), Gaps = 9/365 (2%)
Query: 20 SKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLV 79
S + FE L LS ++ RAI +GY PTPIQ++ +P+IL G DV+ A+TG+GKTA F +
Sbjct: 2 SSNISFEQLGLSTDLLRAISEQGYTNPTPIQQQAIPIILKGFDVMGGAQTGTGKTAGFTL 61
Query: 80 PMLQRLNQHVPQGG------VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSM 133
PMLQ+L H RALIL PTR+LA+Q + + G+Y L+ +++ G ++
Sbjct: 62 PMLQKLESHANSSTSPAKHPTRALILVPTRELAIQVYESVRAYGKYVALKSAVIYDGVNI 121
Query: 134 ESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKIL 193
+ Q + +I++ATPGRL+ HL + +++ L +E ++ DEAD + MGF + +I+
Sbjct: 122 DVQIAAIRSGVEILVATPGRLLDHLQQ-KNLILSKIEILILDEADRMLDMGFLPDIKQII 180
Query: 194 GQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHA 253
L + RQ L+FSAT + + A L+ P L+ + +S + +++ + K
Sbjct: 181 QMLPDQRQNLMFSATFSEEIKKLAGKILKSPILIEVAKQNSVSDLISHIVYSVESKNKQE 240
Query: 254 ALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFR 313
L+ MI++ + QQ LIF TKH + L + SV +GD +Q R + F+
Sbjct: 241 FLIDMIKK--KNLQQVLIFTRTKHGADHLAQKLNSRDILSSVIHGDRNQLQRTQALDNFK 298
Query: 314 ARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSE 373
L+ TDVAARG+DI L +VIN++ P P+ +VHR+GR RAG G A SFV+ E
Sbjct: 299 CGLIRILVATDVAARGLDIEELTHVINFELPNNPEDYVHRIGRTGRAGAKGFAISFVSRE 358
Query: 374 DMAYL 378
+ L
Sbjct: 359 ETVLL 363
>gi|300088260|ref|YP_003758782.1| DEAD/DEAH box helicase [Dehalogenimonas lykanthroporepellens
BL-DC-9]
gi|299527993|gb|ADJ26461.1| DEAD/DEAH box helicase domain protein [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 429
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 145/368 (39%), Positives = 212/368 (57%), Gaps = 9/368 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE+ +L P V +K GY PTPIQ + +P L G D++ +A+TG+GKT AF++PMLQR
Sbjct: 3 FENFDLHPAVRDGVKSAGYTEPTPIQAQAIPPALQGRDLIGLAQTGTGKTTAFVLPMLQR 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L + P+G +R LI+SPTR+LA Q K L ++T LR + GG ME Q +L
Sbjct: 63 LLRG-PRGKLRGLIVSPTRELAEQIYDSVKTLSQHTGLRAMAIYGGVGMEPQKAKLRAGT 121
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE-NRQTL 203
DI+IA PGRL+ H+ + + VE +V DEAD +F MGF + KIL L RQTL
Sbjct: 122 DIVIACPGRLLDHVWQ-GTIDFDDVEMLVIDEADRMFDMGFLPDIRKILRCLVRPERQTL 180
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKL--AFFTLRQEEKHAALLYMIRE 261
LFSAT+P+ + + + L DP V++ ++P + + A + +RQ+ K ALL I
Sbjct: 181 LFSATMPADVRKLVQEFLTDPVTVQIGT---VAPAVTVTHALYPVRQDLK-TALLKQILR 236
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
I L+F TKH E + + R+ G + G++ Q R+ + F+ L+
Sbjct: 237 QIEDAGSVLVFTRTKHRTERVAIALRQAGYAVASIQGNLSQYRRQAALDGFKDGTFKVLV 296
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TD+A+RGID+ + +VIN+D P ++HR+GR R GR+G AF+FVT ED + + L
Sbjct: 297 ATDIASRGIDVSDVSHVINYDMPDTADAYIHRIGRTGRIGRSGDAFTFVTPEDESMVRAL 356
Query: 382 HLFLSKPI 389
L I
Sbjct: 357 EKLLKTTI 364
>gi|406860112|gb|EKD13172.1| ATP-dependent rRNA helicase RRP3 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 497
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 145/379 (38%), Positives = 218/379 (57%), Gaps = 9/379 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L + + A GYK PTPIQ +++PL L D++A+A TGSGKTAAF +P+LQ
Sbjct: 73 FKDLGIVDELCDACTALGYKAPTPIQAESIPLALQDRDLIALAETGSGKTAAFALPILQS 132
Query: 85 L-NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L ++ P G L+L+PTR+LA Q + + LG +R +++VGG M Q L +
Sbjct: 133 LLDKPQPFFG---LVLAPTRELAYQISQSFEALGSKIGVRCAVIVGGMDMVPQAIALGKK 189
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
P II+A+PGRL+ HL + SL++++Y+V DEAD L + F + KIL + R+T
Sbjct: 190 PHIIVASPGRLLDHLENTKGFSLRALKYLVMDEADRLLDLDFGAIIDKILKVIPRERRTY 249
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHI 263
LFSAT+ S + +A L+DP V + + L + K L+Y++ E
Sbjct: 250 LFSATMSSKVESLQRASLKDPLRVSVSTKYQTVSTLIQNCLIVPLVHKDVYLVYLMNEF- 308
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
+ Q +IF T + + L +L R G +G + Q AR +++FRA L+ T
Sbjct: 309 -AGQSAIIFTRTVNETQRLAILLRSLGFGAIPLHGQLSQTARLGALNKFRAGTRKILVAT 367
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL--LDL 381
DVAARG+DIP +D V+N+D PP+ K ++HRVGR ARAG++G AFS VT D+ +
Sbjct: 368 DVAARGLDIPSVDIVLNYDLPPESKTYIHRVGRTARAGKSGHAFSIVTQYDVEIFTRTEA 427
Query: 382 HLFLSKPIRAAPSEEEVLL 400
L + P+ P +EEV++
Sbjct: 428 ALKIRMPVY-EPVKEEVMV 445
>gi|322703417|gb|EFY95026.1| ATP-dependent rRNA helicase RRP3 [Metarhizium anisopliae ARSEF 23]
Length = 478
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 144/380 (37%), Positives = 219/380 (57%), Gaps = 11/380 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L + ++ A + YK PTPIQ K++P+ L D++ +A TGSGKTAAF +P+LQ
Sbjct: 59 FKELGIVDSLCEACESLNYKFPTPIQEKSIPIALQDRDIIGLAETGSGKTAAFALPILQA 118
Query: 85 L-NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L ++ P G L+L+PTR+LA Q + + LG LR +++VGG M Q L +
Sbjct: 119 LLDKPQPLFG---LVLAPTRELAHQIGQAFEALGSSISLRCAVIVGGLDMVPQAVALGKK 175
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
P II+ATPGRL+ HL + + SL++++Y+V DEAD L M F + K+L + R+T
Sbjct: 176 PHIIVATPGRLVDHLEKTKGFSLRTLKYLVMDEADRLLDMDFGPAIDKLLKFIPRERRTY 235
Query: 204 LFSATLPSALAEFAKAGLRDPHLVRLDVDT---KISPDLKLAFFTLRQEEKHAALLYMIR 260
LFSATL S + +A LRDP VR+ V + + L + Q+ K L+Y++
Sbjct: 236 LFSATLSSKVESLQRASLRDP--VRVSVSSNKYQTVSTLLQNLLVVPQKRKDTYLIYLVN 293
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
E + + T++F T + + +L R G +G + Q AR +++FR+ L
Sbjct: 294 EF--TGKSTIVFTRTVWETQRIAILLRTLGFGAIPLHGQLSQSARLGALNKFRSGTRDIL 351
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLD 380
+ TDVAARG+DI +D V+N+D P K ++HRVGR ARAG++G A S VT D+
Sbjct: 352 VATDVAARGLDISKVDVVLNYDLPQDSKTYIHRVGRTARAGKSGIAISLVTQYDIEIFQR 411
Query: 381 LHLFLSKPIRAAPSEEEVLL 400
+ L K + P+E+E +L
Sbjct: 412 IEAALGKKLDIYPTEKEEVL 431
>gi|347541119|ref|YP_004848545.1| ATP-dependent RNA helicase RhlE [Pseudogulbenkiania sp. NH8B]
gi|345644298|dbj|BAK78131.1| ATP-dependent RNA helicase RhlE [Pseudogulbenkiania sp. NH8B]
Length = 455
Score = 249 bits (637), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 139/356 (39%), Positives = 206/356 (57%), Gaps = 9/356 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L LSP + RAI +GY PTPIQ K +PL+LSG D++A A+TG+GKTAAF++P+L+R
Sbjct: 3 FAELGLSPEILRAIDEQGYSEPTPIQAKAIPLVLSGRDLLAAAQTGTGKTAAFMLPILER 62
Query: 85 LNQHVPQGG------VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138
L + VRALILSPTR+LA Q +Y LR +++ GG +M+ Q +
Sbjct: 63 LKKFASTSASPAMHPVRALILSPTRELADQIAVNAAAYTKYLPLRSTVVFGGMNMDPQTQ 122
Query: 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198
EL + +I+IATPGRL+ H+ + + + L V+ +V DEAD + MGF + KILG L
Sbjct: 123 ELRRGVEILIATPGRLLDHVGQ-KTVQLNKVDVLVLDEADRMLDMGFINDIRKILGMLPR 181
Query: 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258
RQTLLFSAT + A+ + DP V + + ++ F++ + K L ++
Sbjct: 182 TRQTLLFSATFAPEIKRLAEEFMHDPQTVEVARQNSTNAQVEQLVFSVDSQRKRYLLSHL 241
Query: 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
IRE Q ++F TK + L + +G +GD Q AR ++ F+ +
Sbjct: 242 IRERQMG--QVIVFCKTKLSADQLARDLKRDGHAAEAIHGDKAQGARLETLTAFKNGEVK 299
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
L+ TDVAARG+DI L V+N++ P P+ +VHR+GR RAG +G A S + ++
Sbjct: 300 VLVATDVAARGLDISELPYVVNFELPNAPEDYVHRIGRTGRAGASGVAISLMGQDE 355
>gi|407714673|ref|YP_006835238.1| ATP-dependent RNA helicase RhlE [Burkholderia phenoliruptrix
BR3459a]
gi|407236857|gb|AFT87056.1| ATP-dependent RNA helicase RhlE [Burkholderia phenoliruptrix
BR3459a]
Length = 530
Score = 249 bits (637), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 134/371 (36%), Positives = 210/371 (56%), Gaps = 9/371 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+SL LS + RA+ GY PTPIQ + +P +L+G D++A A+TG+GKTA F +P+LQR
Sbjct: 3 FDSLGLSEPLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPILQR 62
Query: 85 LNQHVPQGG------VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138
L+ P VRALIL+PTR+LA Q + + G+Y L+ +++ GG + Q
Sbjct: 63 LHSMPPLAAASGKRAVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIG 122
Query: 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198
L DI++ATPGRL+ H+ + + + L +E +V DEAD + MGF + ++L +L
Sbjct: 123 ALKSGVDIVVATPGRLLDHMQQ-KTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPP 181
Query: 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258
RQ LLFSAT + A L P L+ + + + + +++K L ++
Sbjct: 182 KRQNLLFSATFSDEIKALADNLLDSPALIEVARRNTTAETVAQKIHPVDRDKKRELLTHL 241
Query: 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
I++H + Q L+F TKH L ++G+ +G+ Q AR ++ F+
Sbjct: 242 IKQH--NWFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKDGTLQ 299
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
L+ TD+AARGIDI L +V+N+D P P+ +VHR+GR RAG TG A S V +++ L
Sbjct: 300 VLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLL 359
Query: 379 LDLHLFLSKPI 389
D+ + +P+
Sbjct: 360 KDIEKLIKRPV 370
>gi|351703078|gb|EHB05997.1| Putative ATP-dependent RNA helicase DDX27 [Heterocephalus glaber]
Length = 765
Score = 249 bits (637), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 157/454 (34%), Positives = 247/454 (54%), Gaps = 23/454 (5%)
Query: 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPM 81
S F+ +NLS + +AI G+K PTPIQ+ +P+ L G D+ A A TG+GKTAAF +P+
Sbjct: 186 SLSFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPV 245
Query: 82 LQRLNQHVPQGGV-RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
L+RL Q V R L+L PTR+L +Q T++L ++ + L VGG ++SQ L
Sbjct: 246 LERLIYKPRQAPVTRVLVLVPTRELGIQVHSVTRQLAQFCSITTCLAVGGLDVKSQEAAL 305
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
PDI+IATPGRL+ HL L S+E ++ DEAD + F EQ+ +I+ S +R
Sbjct: 306 RAAPDILIATPGRLIDHLHNCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHR 365
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR--QEEKHAALLYM 258
QT+LFSAT+ + + A L++P + ++ +T ++P L+ F +R +E A++
Sbjct: 366 QTMLFSATMTDEVKDLASVSLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAA 425
Query: 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
+ +D ++F TK +++L GL+ +G++ Q R + RF+ +
Sbjct: 426 LLTRTFTD-HVMLFTQTKKQAHRMHILLGLLGLQVGELHGNLSQTQRLEALRRFKDEQID 484
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
L+ TDVAARG+DI + VIN+ P K +VHRVGR ARAGR G + S V E+ L
Sbjct: 485 ILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEERKML 544
Query: 379 LDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREI 438
++ P++A ++V+L + K+++ +Y V+ L ++ RE+
Sbjct: 545 KEIVKAAKAPVKARILPQDVILRFRDRIEKMEK------DVYA-----VLQLEAEE-REM 592
Query: 439 IDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIR 472
S A +N+ A RL K K P +E R
Sbjct: 593 QQSEAQINT-------AKRLLEKGKEAPDQEPER 619
>gi|237796237|ref|YP_002863789.1| DEAD/DEAH box family ATP-dependent RNA helicase [Clostridium
botulinum Ba4 str. 657]
gi|229263626|gb|ACQ54659.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Clostridium
botulinum Ba4 str. 657]
Length = 524
Score = 249 bits (636), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 135/384 (35%), Positives = 226/384 (58%), Gaps = 16/384 (4%)
Query: 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQ 83
FE+LNL+ +V +AI+ G++ P+ IQ K++P++L GADV+A A+TG+GKT AF P++
Sbjct: 5 NFENLNLNEDVLKAIQHMGFETPSAIQEKSIPVVLEGADVIAQAQTGTGKTLAFGAPVIS 64
Query: 84 RLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143
L + GV+AL+L+PTR+LALQ K L Y+ ++ + GG+S+E Q +++
Sbjct: 65 ALCDKEKKKGVKALVLTPTRELALQIKDELKRLSEYSKTKVLPVYGGESIERQIKDIKSG 124
Query: 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203
DI++ TPGR++ H++ + L +++++ DEAD + MGF E + I+ SE +QT+
Sbjct: 125 VDIVVGTPGRVLDHINR-RTLKLGGIDFLILDEADEMLNMGFIEDIETIMESTSEEKQTM 183
Query: 204 LFSATLPSALAEFAKAGLRD--PHLV----RLDVDTKISPDLKLAFFTLRQEEKHAALLY 257
LFSAT+P + + A ++ H+ L VD KI+ + +F ++ ++K AL
Sbjct: 184 LFSATMPEPIKKLALNYMKKDVEHIAILKKSLTVD-KIAQN----YFAVKNKDKLEALCR 238
Query: 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKT 317
+I + +IF TK V+ L + +G +GDM Q+ R + +F+
Sbjct: 239 IIDSE--EPESAIIFCRTKRGVDELVEAMQSKGYNVEGMHGDMSQNQRINTLKKFKKATL 296
Query: 318 MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAY 377
FL+ TDVAARGID+ + +VIN+D P + +VHR+GR RA + GTA+S VT +++
Sbjct: 297 NFLVATDVAARGIDVENISHVINYDIPQDAESYVHRIGRTGRADKEGTAYSLVTPREVSS 356
Query: 378 LLDLHLFLSKPI--RAAPSEEEVL 399
+ + I + P+ E++L
Sbjct: 357 IRQIERITKSKIKKKELPTLEDIL 380
>gi|410640695|ref|ZP_11351225.1| ATP-dependent RNA helicase rhlB [Glaciecola chathamensis S18K6]
gi|410139723|dbj|GAC09412.1| ATP-dependent RNA helicase rhlB [Glaciecola chathamensis S18K6]
Length = 428
Score = 249 bits (636), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 134/354 (37%), Positives = 211/354 (59%), Gaps = 6/354 (1%)
Query: 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQ 83
F SL+L+P + +AI GYK TPIQ+K + + G DV+A A+TG+GKTAAF +P+LQ
Sbjct: 2 NFSSLDLAPALQQAIDACGYKKMTPIQQKAIVVARRGRDVLASAQTGTGKTAAFAIPILQ 61
Query: 84 RL---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
++ + G RA+IL+PTR+LA Q ++TD+ ++ L GG + Q +L
Sbjct: 62 QMLDKPKETVSGATRAIILTPTRELAEQLASNIANYAQFTDISVTALYGGVKLGGQASKL 121
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
DI+I+TPGRL+ H++ ++++ L +VE+VV DEAD + MGF + ++L Q+ R
Sbjct: 122 KAGVDIVISTPGRLLEHMT-LKNIELANVEFVVLDEADRMLDMGFISDVRQMLAQIRAVR 180
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
QTLLFSAT+ + E A L++ +R + ++ + + +E+K ++
Sbjct: 181 QTLLFSATISPTVNELAHKLLKNHEEIRATQLNSAADTVQHVMYPVSEEDKIRLFKTLLA 240
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
E + Q L+F STK + L + + VC+ D Q AR+ ++ F++ K L
Sbjct: 241 EQ--NWYQVLVFTSTKEQADKLMAALKNSKINAGVCHADKSQGARRRAIADFKSAKLQVL 298
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
I T+VAARGIDI LD+V+N++ P P+ +VHR+GR RAG+ G A SFV+ E+
Sbjct: 299 IATEVAARGIDIQGLDHVVNYNLPYLPEDYVHRIGRTGRAGQQGNAISFVSREE 352
>gi|422923013|ref|ZP_16956180.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae BJG-01]
gi|341644564|gb|EGS68762.1| ATP-dependent RNA helicase rhlE [Vibrio cholerae BJG-01]
Length = 464
Score = 249 bits (636), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 136/361 (37%), Positives = 208/361 (57%), Gaps = 5/361 (1%)
Query: 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQ 83
GF SL LS + +AI+ KGY P+PIQ + +P +L+G DV+A A+TG+GKTA F +P+L+
Sbjct: 2 GFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE 61
Query: 84 RLNQ--HVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L + V VRALIL+PTR+LA Q GR+ L+ +++ GG + Q + +
Sbjct: 62 LLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMC 121
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
+ DI++ATPGRLM L + +E +V DEAD + MGF + KIL L E RQ
Sbjct: 122 KGADILVATPGRLMD-LYNQNAVKFDQLEILVLDEADRMLDMGFIRDIRKILKLLPEKRQ 180
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
LLFSAT + + E AK + +P + + + ++ + ++K A L+ +++E
Sbjct: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKQAMLVKLVKE 240
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
+ QQ L+F+ TKH L E+GL + +G+ Q AR ++ F+A + L+
Sbjct: 241 --GNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILV 298
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TD+AARGIDIP L V+N++ P + +VHR+GR RAG G A S V++ + L +
Sbjct: 299 ATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAI 358
Query: 382 H 382
Sbjct: 359 E 359
>gi|392542118|ref|ZP_10289255.1| ATP-dependent RNA helicase [Pseudoalteromonas piscicida JCM 20779]
Length = 411
Score = 249 bits (636), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 139/371 (37%), Positives = 225/371 (60%), Gaps = 7/371 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L L P + AI G++ PTPIQ K++PL+LSG D++A A+TG+GKTAAF++P+L
Sbjct: 3 FSELQLHPELLSAITELGFESPTPIQEKSIPLLLSGFDLIASAQTGTGKTAAFMLPILHS 62
Query: 85 LNQHVPQG--GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
+ QG VRALIL+PTR+LA Q + T++L T L + L GG ++ Q + L
Sbjct: 63 MLMGGTQGEKSVRALILTPTRELAQQVAEHTEKLVVNTSLNVVCLYGGANIGPQEKRLRA 122
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
D+++ATPGRL+ HL + ++LK+++++VFDEAD + MGF ++ +I+ + RQT
Sbjct: 123 GVDVVVATPGRLLDHLIK-GTLTLKNIQHLVFDEADRMLDMGFMGEIKRIMRTMPLKRQT 181
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262
LLFSAT+ A+ K L DP V ++ + + F+++ ++ K + ++I ++
Sbjct: 182 LLFSATVDDAVLSQVKPWLNDPKRVGVESQNSTASTVTQTFYSVDEDRKRELISHLIGKN 241
Query: 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322
+ Q L+F TK+ + ++GL+ + +GD Q AR +S+F++ + L+
Sbjct: 242 --NWHQVLVFTRTKNSADSYAKELNKDGLKTAAIHGDKSQGARDKALSQFKSGEIRVLVA 299
Query: 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382
TDVAA GIDI L+ V N + P + +VHR+GR+ RAG+ G A S V+ ++ L ++
Sbjct: 300 TDVAAHGIDIDSLNYVFNAELPYVAEDYVHRIGRSGRAGQNGQAISLVSIDEQWLLEEIE 359
Query: 383 LFLSKPIRAAP 393
+FL + R AP
Sbjct: 360 IFLDE--RFAP 368
>gi|406979406|gb|EKE01199.1| hypothetical protein ACD_21C00193G0001 [uncultured bacterium]
Length = 368
Score = 249 bits (636), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 148/373 (39%), Positives = 213/373 (57%), Gaps = 23/373 (6%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L L + +A+K GY PTPIQ K +P ILSG D+VA A+TG+GKTAA+++P LQ
Sbjct: 3 FTQLQLHEKILQAVKACGYDKPTPIQVKAIPSILSGKDLVASAQTGTGKTAAYVLPCLQL 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
L H R LIL+PTR+LA Q K + G++ I+ VGG S + Q +EL++
Sbjct: 63 LGAH-KSSKPRVLILAPTRELAGQITKVIAKYGKFMKPNIASFVGGVSYDRQLKELSRPI 121
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
DI+IATPGRLM H+ E + L +E ++ DEAD + MGF + +I+ ++RQTLL
Sbjct: 122 DIVIATPGRLMDHM-ENRRLDLSRIEMLILDEADRMLDMGFIPAIKRIVKATPKSRQTLL 180
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDT-KISPDLKLAFFTLRQEEKH-----AALLYM 258
FSAT L K L++P VR+++ K+ P L + ++ +H A LL
Sbjct: 181 FSATADDKLMSVMKDLLKNP--VRINISQDKVDPKLIKQEIYMSRDSRHKNQVLAQLL-- 236
Query: 259 IREHISSDQQTL----IFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRA 314
DQQ + IF +TK H L R+ G S +GD+ Q+AR +++FR
Sbjct: 237 -------DQQNIFKAIIFSATKRHASKLATQLRDNGYAASPMHGDLKQNARNRTLAQFRT 289
Query: 315 RKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
+ FL+ TDVAARGID+ + +VIN+D P + +VHR+GR RAG+TG A S +
Sbjct: 290 GEVQFLVATDVAARGIDVSDVSHVINYDLPRFHEDYVHRIGRTGRAGKTGVAISIALHSE 349
Query: 375 MAYLLDLHLFLSK 387
M L + ++ K
Sbjct: 350 MKQLQSIERYIGK 362
>gi|334131082|ref|ZP_08504848.1| ATP-dependent RNA helicase [Methyloversatilis universalis FAM5]
gi|333443712|gb|EGK71673.1| ATP-dependent RNA helicase [Methyloversatilis universalis FAM5]
Length = 535
Score = 249 bits (636), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 136/374 (36%), Positives = 211/374 (56%), Gaps = 6/374 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L L+ + RAI +GY PTPIQ+K +PL+++G D++A A+TG+GKTA F +P+L
Sbjct: 7 FAGLGLAEPLLRAISEEGYTHPTPIQQKAIPLVIAGRDLLAAAQTGTGKTAGFTLPILHT 66
Query: 85 L---NQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L +P G R L+L+PTR+LA Q + + GR+ +R ++ GG M Q + L
Sbjct: 67 LLNRPASIPAGRPRVLVLTPTRELAAQVEESVRTYGRHAKMRSMVMFGGVGMNPQLQALK 126
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
Q DI++ATPGRL+ H+ E + + L VE V DEAD + MGF + K++ L + RQ
Sbjct: 127 QRVDILVATPGRLLDHVGE-KSLDLSGVEIFVLDEADRMLDMGFIRDIRKVIAVLPKVRQ 185
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
TLL+SAT + E A L DP V + + + + + Q++K L ++I +
Sbjct: 186 TLLYSATFSPEIRELAHGLLNDPAEVEVAPRNTTAERVAQEVYMVEQKQKRHLLAHLINQ 245
Query: 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321
S Q L+F TKH L ++G+ + +G+ Q+AR ++ F++ L+
Sbjct: 246 GAWS--QVLVFTRTKHGANRLAEQLDKQGITAAAIHGNKSQNARTRALADFKSNTLRVLV 303
Query: 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381
TD+AARG+DI L +V+N++ P P+ +VHR+GR RAG +G A S V E+ L +
Sbjct: 304 ATDIAARGLDIDQLPHVVNFELPNVPEDYVHRIGRTGRAGASGAAISLVDREEAKLLTAI 363
Query: 382 HLFLSKPIRAAPSE 395
+ I A +E
Sbjct: 364 EKVTRQSIPRATAE 377
>gi|197116587|ref|YP_002137014.1| ATP-dependent RNA helicase RhlE [Geobacter bemidjiensis Bem]
gi|197085947|gb|ACH37218.1| ATP-dependent RNA helicase RhlE [Geobacter bemidjiensis Bem]
Length = 453
Score = 249 bits (636), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 143/369 (38%), Positives = 218/369 (59%), Gaps = 12/369 (3%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE+LNLS + +AI+ GY PTPIQ +++PL LSG D++ A+TG+GKTA+F++P L+R
Sbjct: 3 FETLNLSAPILKAIQACGYTQPTPIQAESIPLALSGRDLIGSAQTGTGKTASFVLPALER 62
Query: 85 LNQHVP-QG-GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142
L P +G G R L+L+PTR+LA+Q + + G++ +R ++GG Q LAQ
Sbjct: 63 LLTPSPLRGKGPRILVLTPTRELAIQVVDAVRSYGKFMRVRCGSILGGMPYRDQMMLLAQ 122
Query: 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202
DII+ATPGRL+ HL ++ +E +V DEAD + MGF+E + +I RQT
Sbjct: 123 PVDIIVATPGRLIDHLDR-RSINFSRLEMLVLDEADRMLDMGFSEDVDRIANAAPAERQT 181
Query: 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKL-AFFTLRQEEKHAALLYMIRE 261
LLF+AT+ A+A+ A+ L+DP VR+ V+ +L++ + + +H L +
Sbjct: 182 LLFTATMDDAMAKLAQRLLKDP--VRVAVEGTEVANLQIEQRLHVTDDMRHKNRLL---Q 236
Query: 262 HISSD---QQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
H+ SD + +IF +TK + L +G + +GDM Q AR ++ R K
Sbjct: 237 HLVSDASVTKAIIFSATKKDADQLAFELYSQGHAAAALHGDMSQGARNKTITMMRRGKVR 296
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
L+ TDVAARG+D+ + +VIN+D P + +VHR+GR RAG TG A SF + ++ YL
Sbjct: 297 LLVATDVAARGLDVTGISHVINYDLPKFAEDYVHRIGRTGRAGATGIAISFCSMNEVVYL 356
Query: 379 LDLHLFLSK 387
+ F K
Sbjct: 357 DRIERFTGK 365
>gi|398804512|ref|ZP_10563506.1| DNA/RNA helicase, superfamily II [Polaromonas sp. CF318]
gi|398093685|gb|EJL84061.1| DNA/RNA helicase, superfamily II [Polaromonas sp. CF318]
Length = 575
Score = 249 bits (636), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 134/371 (36%), Positives = 212/371 (57%), Gaps = 9/371 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
FE LNL+P + +A+ +GY PTPIQ + +P +L G D++ A+TG+GKTAAF +P+LQR
Sbjct: 3 FEELNLAPAILKAVLEQGYDTPTPIQAQAIPAVLKGVDLLGGAQTGTGKTAAFTLPLLQR 62
Query: 85 LNQHV------PQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138
L+ VRALI++PTR+LA Q + + G+YTDL ++ GG M +Q E
Sbjct: 63 LSTEARLTNRRGVNAVRALIMTPTRELAAQVEESVRTYGKYTDLTSMVMFGGVGMGAQIE 122
Query: 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198
+L + DI++ATPGRL+ H S+ + L V+ +V DEAD + MGF + K+L + +
Sbjct: 123 KLRRGVDILVATPGRLLDHASQ-GTLDLSQVQILVLDEADRMLDMGFIHDIKKVLALVPK 181
Query: 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258
+Q+LLFSAT + E A L++P +++ + + + +K A L ++
Sbjct: 182 QKQSLLFSATFSDEIRELANGLLKNPESIQVTPRNTTVQRITQTIHPVGRSKKKALLTHI 241
Query: 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
I EH S Q L+F TK + + G+ +G+ Q AR ++ F++
Sbjct: 242 INEHNWS--QVLVFTRTKFGANNVAEHLTKHGIPAMALHGNKSQTARTQALADFKSGTIR 299
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
L+ TD+AARGIDI L +V+N++ P + +VHR+GR RAG +G A S V ++ ++
Sbjct: 300 ALVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGNSGEAVSLVCLDEEGFM 359
Query: 379 LDLHLFLSKPI 389
D+ F + I
Sbjct: 360 QDIERFTKQNI 370
>gi|239624536|ref|ZP_04667567.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales
bacterium 1_7_47_FAA]
gi|239520922|gb|EEQ60788.1| DEAD/DEAH box helicase domain-containing protein [Clostridiales
bacterium 1_7_47FAA]
Length = 518
Score = 249 bits (636), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 144/375 (38%), Positives = 224/375 (59%), Gaps = 17/375 (4%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+ L LSP + +A+ +KGY P+PIQ + +P +L+G D++ A+TG+GKTAAF +P++Q
Sbjct: 3 FDELQLSPLLLKALDQKGYIKPSPIQEQAIPYVLNGQDLLGCAQTGTGKTAAFALPIIQN 62
Query: 85 LNQHVPQG-----GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139
L + P+ VRALIL+PTR+LALQ + +E G T + +++ GG S + Q +
Sbjct: 63 LMER-PKNRQKKKPVRALILTPTRELALQIHENIEEYGAGTPINSAVIFGGVSAKPQIQS 121
Query: 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSEN 199
L + DI++ATPGRL+ + + E + L VE V DEAD + MGF + +++ L +
Sbjct: 122 LRRGIDILVATPGRLLDLIGQHE-IDLSFVEIFVLDEADRMLDMGFIHDVKRVITLLPKK 180
Query: 200 RQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKL---AFFTLRQEEKHAALL 256
RQTLLFSAT+P + A L +P V+++V T +S + L + + + + K L+
Sbjct: 181 RQTLLFSATMPDEIQALAAKLLHNP--VKVEV-TPVSSTVDLIETSLYYVDKANKWPLLV 237
Query: 257 YMIR-EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRAR 315
+++ E +SS TL+F TKH + + G+ + +GD Q AR+ +S F++
Sbjct: 238 HLLEHEDVSS---TLVFTRTKHGADRGAKYLNKSGITAAAIHGDKSQGARQTALSNFKSG 294
Query: 316 KTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDM 375
+ L+ TD+AARGIDI L VIN+D P P+ +VHR+GR RAG G A SF E+
Sbjct: 295 RLRVLVATDIAARGIDIEELSCVINFDLPNVPETYVHRIGRTGRAGLGGRAISFSDIEEK 354
Query: 376 AYLLDLHLFLSKPIR 390
AY+ D+ K I+
Sbjct: 355 AYVKDIEKLTGKTIQ 369
>gi|300715940|ref|YP_003740743.1| ATP-dependent RNA helicase [Erwinia billingiae Eb661]
gi|299061776|emb|CAX58892.1| ATP-dependent RNA helicase [Erwinia billingiae Eb661]
Length = 480
Score = 249 bits (636), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 138/369 (37%), Positives = 211/369 (57%), Gaps = 7/369 (1%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+SL L+ ++ RA+ +GY PTPIQR+ +P++L+G D++A A+TG+GKTA F +P+LQ
Sbjct: 3 FDSLGLNADILRAVAEQGYDEPTPIQRQAIPVVLAGRDLMASAQTGTGKTAGFTLPVLQL 62
Query: 85 LNQHVPQG----GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140
L+ H P VRALIL+PTR+LA Q + ++ +Y DLR ++ GG S+ Q +L
Sbjct: 63 LSSHNPHPKGRRPVRALILTPTRELAAQIGENVQDYSKYLDLRSLVVFGGVSINPQMMKL 122
Query: 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200
D+++ATPGRL+ L + L VE +V DEAD + MGF + ++L +L R
Sbjct: 123 RSGVDVLVATPGRLLD-LEHQNALDLSKVEILVLDEADRMLDMGFIHDIRRVLAKLPAKR 181
Query: 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260
Q LLFSAT + A+ L +P V + S + + ++ K L ++I
Sbjct: 182 QNLLFSATFSDEIKGLAEKLLHNPEEVSVARRNTASEQITQHVHMVDKKRKRELLSFLIG 241
Query: 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
+ QQ L+F TKH L ++G+ + +G+ Q AR +S F+ K L
Sbjct: 242 R--DNWQQVLVFTRTKHGANHLAEQLNKDGITSAAIHGNKSQGARTRALSDFKEGKIRVL 299
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLD 380
+ TD+AARGIDI L +V+N++ P P+ +VHR+GR RA TG A S V +++ L D
Sbjct: 300 VATDIAARGIDISELPHVVNFELPNVPEDYVHRIGRTGRAAATGEALSLVCVDELKLLRD 359
Query: 381 LHLFLSKPI 389
+ L + I
Sbjct: 360 IERVLKREI 368
>gi|307730917|ref|YP_003908141.1| DEAD/DEAH box helicase [Burkholderia sp. CCGE1003]
gi|307585452|gb|ADN58850.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1003]
Length = 517
Score = 249 bits (636), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 134/371 (36%), Positives = 210/371 (56%), Gaps = 9/371 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F+SL LS + RA+ GY PTPIQ + +P +L+G D++A A+TG+GKTA F +P+LQR
Sbjct: 3 FDSLGLSEPLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPILQR 62
Query: 85 LNQHVPQGG------VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138
L+ P VRALIL+PTR+LA Q + + G+Y L+ +++ GG + Q
Sbjct: 63 LHSMPPVAAASGKRAVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQIG 122
Query: 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198
L DI++ATPGRL+ H+ + + + L +E +V DEAD + MGF + ++L +L
Sbjct: 123 ALKSGVDIVVATPGRLLDHMQQ-KTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLPP 181
Query: 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258
RQ LLFSAT + A L P L+ + + + + +++K L ++
Sbjct: 182 KRQNLLFSATFSDEIKALADNLLDSPALIEVARRNTTAETVAQKIHPVDRDKKRELLTHL 241
Query: 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318
I++H + Q L+F TKH L ++G+ +G+ Q AR ++ F+
Sbjct: 242 IKQH--NWFQVLVFTRTKHGANRLAEQLSKDGISALAIHGNKSQSARTRALAEFKDGTLQ 299
Query: 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYL 378
L+ TD+AARGIDI L +V+N+D P P+ +VHR+GR RAG TG A S V +++ L
Sbjct: 300 VLVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLL 359
Query: 379 LDLHLFLSKPI 389
D+ + +P+
Sbjct: 360 KDIEKLIKRPV 370
>gi|227528896|ref|ZP_03958945.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus vaginalis
ATCC 49540]
gi|227351170|gb|EEJ41461.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus vaginalis
ATCC 49540]
Length = 501
Score = 249 bits (636), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 139/398 (34%), Positives = 226/398 (56%), Gaps = 10/398 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L LS ++ +AIKR GY+ TPIQ +T+P++L G DV+ A+TG+GKTAAF +P+++
Sbjct: 3 FSELGLSDSLLKAIKRSGYEEATPIQEQTIPMVLKGQDVIGQAQTGTGKTAAFGLPIIEH 62
Query: 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNP 144
++ P ++A+I+SPTR+LA+QT + LG+ +R+ ++ GG + Q L Q+P
Sbjct: 63 VDTDNPN--IQAIIISPTRELAIQTQEELFRLGKDKHVRVQVVYGGADIRRQIRNLKQHP 120
Query: 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204
I++ TPGRL HL+ + L ++ +V DEAD + MGF + + I+ Q +RQTLL
Sbjct: 121 QILVGTPGRLRDHLNR-HTVKLDHIKTLVLDEADEMLNMGFLDDIEAIIDQTPADRQTLL 179
Query: 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFT-LRQEEKHAALLYMIREHI 263
FSAT+P + + + DP +VR+ +++ DL ++ R EK + +I +
Sbjct: 180 FSATMPPEIKKIGVKFMTDPTMVRIKA-KELTTDLVDQYYVKARDYEKFDIMTRLI--DV 236
Query: 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323
T++F TK V+ L+ G + +GD+ QD R + +F+ + L+ T
Sbjct: 237 QDPDLTIVFGRTKRRVDELSRGLVARGYNAAGIHGDLSQDRRTKIMKKFKHGELDILVAT 296
Query: 324 DVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHL 383
DVAARG+DI + +V N+D P P +VHR+GR RAG G + +FVT +M YL ++
Sbjct: 297 DVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMDYLREIEK 356
Query: 384 FLSK---PIRAAPSEEEVLLDMDGVMSKIDQAIANGET 418
P++ +EE + + ID+ I+ T
Sbjct: 357 LTRVRMLPLKPPTAEEAFKGQVASAFNDIDELISQDST 394
>gi|145353647|ref|XP_001421118.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581354|gb|ABO99411.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 755
Score = 249 bits (636), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 138/358 (38%), Positives = 204/358 (56%), Gaps = 11/358 (3%)
Query: 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQ 83
F+ L+LS + RA + GYK PTPIQ +P+ ++G DV A TGSGKTAAF++P L+
Sbjct: 149 AFDELHLSRPLTRACEALGYKKPTPIQAAVIPIAMTGRDVCGRAVTGSGKTAAFMLPQLE 208
Query: 84 RLNQHVPQ--GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
R+ P+ L+L PTR+LA+Q + T+ L ++T +R L+VGG S Q L
Sbjct: 209 RMLHRGPRPAAATHVLVLVPTRELAVQVHQMTESLAQFTTIRAVLVVGGLSANVQAAALR 268
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
P+I++ATPGR++ H+ L+ + ++ DEAD L MGF E++ +I+ Q + RQ
Sbjct: 269 TRPEIVVATPGRVIDHVRNTHSFGLEDLATLILDEADRLLEMGFLEEIKEIVRQCPKKRQ 328
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR-----QEEKHAALL 256
TLLFSATL + + A +++P RL DT + +L L+ +K A L+
Sbjct: 329 TLLFSATLTAGVEALASLSMKNP--ARLSADTLGTTPKRLVEEVLKLKPNQSAQKEAFLM 386
Query: 257 YMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK 316
++ S D+ T+IF TK L ++ ++ +GDM Q R + FR
Sbjct: 387 AIVSR--SYDKSTIIFSQTKQEAHRLKIIMGLSDIKAGELHGDMTQTQRLAALDEFRTGT 444
Query: 317 TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374
LI TDVAARG+DIP +D VI++D P ++HRVGR ARAG+ GTA +F+ D
Sbjct: 445 VTHLIATDVAARGLDIPSVDAVISFDAPKTLASYLHRVGRTARAGKKGTALTFMEESD 502
>gi|145589523|ref|YP_001156120.1| DEAD/DEAH box helicase [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
gi|145047929|gb|ABP34556.1| DEAD/DEAH box helicase domain protein [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
Length = 426
Score = 249 bits (636), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 138/361 (38%), Positives = 207/361 (57%), Gaps = 8/361 (2%)
Query: 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQR 84
F L LS + RAI +GY PTPIQ K++P +L G D++A A+TG+GKTA F +P+LQR
Sbjct: 3 FTDLGLSEPILRAIAEEGYTSPTPIQAKSIPAVLKGGDLLAAAQTGTGKTAGFTLPILQR 62
Query: 85 LNQHVPQGG---VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141
L+ G +R LIL+PTR+LA Q + G+YT L+ +++ GG Q + +A
Sbjct: 63 LSSIKASSGKRVLRVLILTPTRELAAQVQESVVTYGKYTGLKSTVIFGGVGANPQIKAIA 122
Query: 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201
DI++ATPGRL+ +S+ + +SL +E +V DEAD + MGF + KIL L + RQ
Sbjct: 123 AGLDILVATPGRLLDLMSQ-KCVSLNDIEILVLDEADRMLDMGFLRDIKKILAALPKQRQ 181
Query: 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261
LLFSAT + + A L P L+ + + + + + +KH L ++I+
Sbjct: 182 NLLFSATFSTEIKALADGLLNKPELIEVARSNSANEAIAQLIHPVDRNQKHPLLAHLIK- 240
Query: 262 HISSD-QQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320
S+D +Q L+F TKH L ++G+ +G+ Q AR ++ F+A K L
Sbjct: 241 --SNDWKQVLVFTRTKHGANKLVTQLEKDGITSMAIHGNKSQTARTKALADFKAGKLTAL 298
Query: 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLD 380
+ TD+AARGIDI L +V+N+D P + +VHR+GR RAG G A S V ++ L D
Sbjct: 299 VATDIAARGIDIDQLPHVVNYDLPNVSEDYVHRIGRTGRAGSNGVAVSLVCVDEHQMLRD 358
Query: 381 L 381
+
Sbjct: 359 I 359
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.133 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,880,412,851
Number of Sequences: 23463169
Number of extensions: 507724556
Number of successful extensions: 1627221
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 28673
Number of HSP's successfully gapped in prelim test: 9436
Number of HSP's that attempted gapping in prelim test: 1494925
Number of HSP's gapped (non-prelim): 50398
length of query: 786
length of database: 8,064,228,071
effective HSP length: 151
effective length of query: 635
effective length of database: 8,816,256,848
effective search space: 5598323098480
effective search space used: 5598323098480
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 81 (35.8 bits)